LOCUS       DATIQF010000001         1833 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_15218, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000001 DATIQF010000000
VERSION     DATIQF010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1833
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15218"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1693
                     /locus_tag="VLL95_00005"
     CDS             <1..1693
                     /locus_tag="VLL95_00005"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="outer membrane beta-barrel family protein"
                     /protein_id="HSR37268.1"
                     /translation="VIAQDIDNVSDGSFAFGRTGVDYFIDNRNTLTASFNFVRGSFNT
                     FETNTLRYDTFYNPVKSEKGVRTTESDRMFRNLGSTLSFKHLFTKPGHELTADVTYSD
                     LNSDGTSNFDNQMYDQRNNPKAPPTRQLTEGVTSSTFWVAQTDYTNKLSASTKIEGGL
                     RAQVRKFTTLNDNYVYDINTNDFVLVPSVSSKFQFTDRVFAAYTAISGKAGKEARLGY
                     NFGLRAESSDYFGTILTDNSKFNVKFPISLFPSAFLSYKLTEKSDIQANYSRRINRPN
                     FFQLVPFIDFTDPLNLQVGNPGLKPEFTNGFELNYSQQFSPTHTLLVTSYFKHTDNLL
                     TRYQYKDLNPITKDSAIYNTWINANYSMQYGVEFTSTNKFTKKFETLTNLNVYNATIN
                     SKNINPNLNNSQTSFFGKITLTQRLGKTNQWTLQMNADYQSRTVLPVGSGGRMMGGGG
                     GGFMGGPTAAGSNGFVNPNYGVDFSIRRDIIKNKNGQGYAGSLTLSMNDIFRTRIYDA
                     TTSSDFFVQNLQRRRDPQVVRLQFNWRFGKFDASLFKRKNMKGEMEGMSEGMNMQ"
BASE COUNT          510 a          507 c          400 g          416 t
ORIGIN      
        1 cgttattgca caggacatag acaacgtgag tgatggttcc tttgcctttg gccgtaccgg
       61 cgtggattac tttatcgaca accgtaatac cctgaccgcc tctttcaact ttgtgcgtgg
      121 cagtttcaac acctttgaaa ccaacactct gcgctacgat actttctaca acccggtgaa
      181 atcggaaaaa ggagtgcgca ccaccgaatc agacaggatg ttccgcaacc tgggcagtac
      241 cctcagcttc aagcacctgt ttacaaaacc ggggcatgaa ctcaccgccg atgttaccta
      301 cagcgacctt aacagcgatg gcacatcgaa tttcgacaac cagatgtacg accagagaaa
      361 caaccccaaa gcccctccaa cccgccagtt gactgaagga gtgacttcca gtactttttg
      421 ggtggcacaa accgattata ccaataagct gagcgccagc acaaaaattg aaggtggctt
      481 gcgggcccag gtgagaaagt tcaccaccct caacgacaac tatgtatacg acatcaatac
      541 aaatgatttt gtactggtgc ccagtgtaag ctccaagttc cagtttaccg accgggtgtt
      601 tgcagcctat accgccatct ctggtaaagc aggcaaggaa gcccgccttg gttacaattt
      661 tggcctgcgg gcagaaagtt ctgattactt cggaaccatt cttaccgaca actcaaagtt
      721 caatgtaaaa ttccccatct cccttttccc cagcgctttc ctgagttata agctcactga
      781 gaagagtgac atccaggcca actacagccg ccggatcaat cggcccaatt tcttccagtt
      841 agtgcccttc attgacttta ccgatcccct gaacctgcag gtgggcaacc ccggtttgaa
      901 accagaattc accaatggtt ttgaactgaa ctacagtcag caattcagcc ctacccatac
      961 attgttggta accagttact tcaagcatac cgacaacctg cttacccgtt atcaatacaa
     1021 ggatctgaac ccgatcacaa aagacagcgc catttacaat acctggatca acgccaacta
     1081 ctctatgcaa tacggcgttg aattcaccag caccaataag tttaccaaga agttcgaaac
     1141 gctgaccaac ctcaacgttt ataacgccac catcaacagc aaaaacatca accccaacct
     1201 gaacaacagc caaaccagtt tcttcggtaa gatcacgttg acacaaaggc tgggcaagac
     1261 caaccaatgg acattgcaaa tgaatgccga ctaccagagc cgtacggtat tgcctgtagg
     1321 cagcggtggc cgtatgatgg gtggcggcgg tggcggcttc atgggtgggc ccactgcagc
     1381 tggcagcaac ggctttgtga accccaacta tggtgtggac ttcagcattc gccgtgacat
     1441 catcaagaac aagaatggcc agggatatgc tggttcgctc acgctgagca tgaacgacat
     1501 tttccgtacc cgcatttacg acgctaccac ttccagcgac ttctttgtgc agaacctgca
     1561 acgccgccgc gacccgcagg tggtgcgcct gcagttcaac tggcgctttg gcaagttcga
     1621 tgccagcctg ttcaagcgca agaacatgaa gggcgaaatg gaaggaatga gcgaaggcat
     1681 gaacatgcaa taacatttta ctgcctgaca cggtacaaaa aagacgaagc ttggcttcgt
     1741 cttttttatt gtcatctcaa tgacatgaat accagtatta ctgcgttttg ttctttcctt
     1801 tcagcatggg cacaaagcga aacaggtcgt aca
//
LOCUS       DATIQF010000002         5156 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_167247,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000002 DATIQF010000000
VERSION     DATIQF010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5156
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167247"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            172..1620
                     /locus_tag="VLL95_00010"
     CDS             172..1620
                     /locus_tag="VLL95_00010"
                     /inference="COORDINATES: protein motif:HMM:NF013132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HSR37269.1"
                     /translation="MKINPRSLWLAGSALTFLLVLFFNPFRLEPSANKIVACAILMVM
                     LWVSEALPMPVVALIPLVLFPLLGIADTAETAAPFANPVIFLFMGGFMIGLAIEKWDL
                     HRRIALNMVKATGTGGSRIILGFILATGFLSMWLSNTATTMMMYPIAMSVVQVLEQNA
                     SDQKAVRNMSICLLLSIAYASNFGGIATIIGTPPNVAYTAYLKKQYNYSFQFTDWMMI
                     GVPVAFLMMFSLYFLMTRVLYRRQPANDGQTRALIEHELVQLGKMSAGEKRVLAVFLL
                     TASLWIFKDLINKFFGTRFDDNLIAILGAILLFLIPSGDKKGVGKWLLEWSDTSKMAW
                     GMLLLFGGGISLANQLEKAGIISQVSNWIASSAGSNAFLLVLAITTISIFISELLSNV
                     GQVIVFTPVLTGMADALHMDPLLLATPMVLAASCASMLPMGTPPNAIVFASGRLRLND
                     MLRTGFVMNITAIILITLFCYYLLPMAVAHIR"
     gene            complement(1643..2407)
                     /locus_tag="VLL95_00015"
     CDS             complement(1643..2407)
                     /locus_tag="VLL95_00015"
                     /inference="COORDINATES: protein motif:HMM:TIGR00010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HSR37270.1"
                     /translation="MHLINTHTHLYLPQFDHDRAQMVARAKAIGVERFYLPGIDSEVI
                     DRMLQTEQDFPECIMMPGLHLCSVKENYKEELAIVESWLGKRKFPAVGEIGLDFYWDK
                     TFTEQQYDAFRIQIEWALQYNLPIVIHTRNAMQETINVVREYKGRGLRGIFHCFSGSY
                     ESARQIIDAGFLLGIGGVVTYKNAGLPEVLSQFSVDHLVLETDAPYLTPVPFRGKRNE
                     SSYLQYVVEKLAEVYGVSKDEIASMTTSNAKALFAY"
     gene            2706..3629
                     /locus_tag="VLL95_00020"
     CDS             2706..3629
                     /locus_tag="VLL95_00020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37271.1"
                     /translation="MIRKPLQLALAATLFGAALLTGCQKSLQDDNLLATEQETTFAVT
                     EDDAEAEATFNDVGEQALGIDGEIGIGQVDFFAGINLNERDVRVLGNENVLDNNPLPA
                     RCFTVTVSPRDPGVFPKTVTIDYGTTGCKGRDGKVRTGKVITVYSKPMMVPGSQAVTE
                     FDNYTVDSVSVKGRHVVKNKSTSSVLIITKLVVNGQLIKPNGNYIKWDAEHTQTQVAG
                     LGTPAFPRDDEWSITGGARGETKRGTNLIAWSRIIVEPLHKAFTCRWIDKGVVKITRN
                     DKEARLNFGNGTCDNLATITVNGVTREIKLK"
     gene            3733..4629
                     /locus_tag="VLL95_00025"
     CDS             3733..4629
                     /locus_tag="VLL95_00025"
                     /inference="COORDINATES: protein motif:HMM:NF019533.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1684 domain-containing protein"
                     /protein_id="HSR37272.1"
                     /translation="MRTCFLLTFLLVNLHTMLRSQSTRANEEYARELETWNKARVAYL
                     KSDTGWLNLAGLFWLQPGHNSIGSTDTSHVLIKGSEIPGHAGTLWLADGKVTLLDHGS
                     KMFKANGQPIQEKVIFPSGEGKPTTVDIGHYRFHIIRRDSKLGVRLRDLQHPALQSFN
                     GAERYPADTQYRVMATLIPAGPYKTIPVTNVLGQTTQQPSPGTLIFTLKGRQYALQTL
                     LEEGKLFIVFGDETNADETYGAGRFLYADQPDSSGRVLLDFNKALNPPCAFTPFATCP
                     LPPKGNQMPLAIRAGEKNYGHH"
     gene            complement(4638..>5156)
                     /locus_tag="VLL95_00030"
     CDS             complement(4638..>5156)
                     /locus_tag="VLL95_00030"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HSR37273.1"
                     /translation="PHPDATPFVLDQLDACGMKGTFFCIGKNVANHPDIMADILKRGH
                     SVGNHTMHHLNAKQATADDYLKDVKEAAELISSELFRPPYGQIRSAHAHAIRNAFPSM
                     KLVMWSVLTGDFDTSRTGEQCFAALRKNTRPGSIIVFHDSAKAFERLRVALPLTLEWL
                     KQQGLTSSVLPD"
BASE COUNT         1279 a         1385 c         1221 g         1271 t
ORIGIN      
        1 gggattcgaa ccctcgatac agtctcccgt atacccgctt tccaggcgag ccccttcaac
       61 cactcgggca cctctctgta tacagggcgg caaaaatagc cttttacatt gtttcaccaa
      121 taggcaatgc taatctggta aatattgcta atttaatcgc ttaatgatcc tatgaaaatc
      181 aacccacgat ccttatggct ggctggttca gctctaactt ttttgttggt cctttttttc
      241 aatcctttcc ggctagaacc atcagccaac aaaattgtgg cttgtgcgat tctaatggta
      301 atgctgtggg tgagcgaagc tttgccaatg ccagtagtag ctttaatacc gctggtactt
      361 tttccattgc tgggcattgc cgatactgct gaaacagcag ccccctttgc caacccggtc
      421 atttttcttt tcatgggagg ctttatgatt ggcctggcca ttgaaaaatg ggacctgcac
      481 cggcgtattg cactgaacat ggtgaaggcc acaggcaccg gtggcagccg catcatcctt
      541 ggtttcattt tagctacagg attcctcagc atgtggctca gcaatactgc aaccaccatg
      601 atgatgtacc cgatagccat gagtgtggtg caggtgctgg agcaaaacgc atcggatcag
      661 aaagccgttc gcaacatgtc gatttgcctg ttgctgagca tcgcttacgc cagcaatttt
      721 ggcggcatcg ctaccatcat aggcacacct ccgaatgtgg cctacaccgc gtacctgaag
      781 aaacaataca actacagctt ccagtttacc gactggatga tgattggagt accggttgcc
      841 ttcctgatga tgttcagctt gtattttttg atgaccaggg tgttgtaccg ccgccaaccg
      901 gctaatgacg gccaaacccg ggccttgatt gagcatgaac tggtgcaact gggaaagatg
      961 tcggcgggtg aaaaaagagt gctggccgta ttcctgctca ctgcttctct ttggattttc
     1021 aaagacctga tcaataaatt tttcggcacc cgcttcgacg acaacctgat cgccatcctg
     1081 ggggccatac tcttgtttct cattccgagt ggcgataaaa aaggagtcgg caagtggctg
     1141 cttgaatgga gcgatacatc caaaatggcc tggggcatgc tgctgttgtt tggaggaggt
     1201 atttccctgg ccaatcaatt ggaaaaggct ggcatcatat cgcaggtgag taattggatt
     1261 gcctccagcg cagggtccaa cgctttcctg cttgttcttg ccatcaccac catttccatt
     1321 ttcatcagcg aactattgag caacgtaggg caggtaattg tattcacccc ggtgctcacc
     1381 ggtatggccg atgcattgca tatggacccg ttgctgttgg ccaccccaat ggtactggca
     1441 gccagttgtg ccagcatgtt gcccatgggc actccgccca atgccattgt ttttgccagt
     1501 ggcagactgc ggttgaatga catgttgcgc accggatttg taatgaacat cacagccata
     1561 atactcatca cccttttctg ctactacctg ttaccgatgg ccgtcgccca tattcgctaa
     1621 aacggggaat cgaaatgtgt catcaataag caaaaagcgc ctttgcgttg gatgtggtca
     1681 tggacgcaat ttcgtccttc gacacgccat agacttctgc gagtttttca accacatatt
     1741 gcaggtagct gctctcattg cgctttcccc tgaaaggtac cggagtgagg tagggagcat
     1801 cggtttccag caccaaatga tccactgaaa attgggagag cacttcgggc agtcccgcat
     1861 ttttgtaagt gaccacgccg cctatcccca acaggaaacc ggcgtctata atttgacggg
     1921 cactttcata gctgccactg aagcagtgaa aaatacctcg caatcccctg cccttgtatt
     1981 cacgcaccac attgatggtt tcctgcatcg cgtttcgggt gtgaatcaca atgggaaggt
     2041 tgtattgcag tgcccattca atctgaatgc ggaaagcatc atactgctgt tcggtaaagg
     2101 ttttatccca atagaaatca agcccaattt cacctactgc tggaaatttt ctttttccca
     2161 accagctttc tacaatcgcc agttcctctt tgtaattctc ttttaccgag cagagatgca
     2221 ggcccggcat catgatacat tcaggaaaat cctgttccgt ttgcagcatg cgatcgatga
     2281 cttcactgtc gatgccgggt aaataaaaac gctccacccc aatggctttg gcccgggcta
     2341 ccatctgtgc ccggtcgtgg tcgaattgcg gcaaatacag gtgcgtatgg gtattgataa
     2401 gatgcatggc cgctaaaata cagaagagag gagaggtaaa tgagtcaaat agtgaatggg
     2461 caataaagca aatggtaaat gagggtggtt ggtcaggttt gatagactat tcaggatacc
     2521 tccgaaaaca ggttccggca cccaacagcc gccgggccac acctggccct ttcacatgcc
     2581 cccctattca cccattcact tattcactca ttcacttggt caccccctgc ctcattgact
     2641 ttttttaacc ggacattaaa ccccggtcat gtaacacggt cacatatgca caaaaaccaa
     2701 ttaccatgat acgcaagcca ctacaacttg ccctcgctgc cactctcttt ggcgccgccc
     2761 tgcttaccgg ttgccagaaa agcctgcaag acgacaacct tcttgccact gaacaggaaa
     2821 ccacttttgc cgtaaccgaa gatgatgccg aagccgaagc cacgttcaat gatgtgggcg
     2881 aacaagccct tggcatcgat ggcgaaattg gcattggcca ggtcgacttt tttgccggca
     2941 tcaacctcaa tgaaagggat gtacgggtgc ttggcaatga aaatgtgctg gacaacaacc
     3001 cgctgcctgc ccgttgcttt acggtgaccg tttcacccag ggaccccggc gtattcccca
     3061 aaacagtgac cattgattat ggcaccaccg gctgcaaagg ccgtgatggc aaggtgcgca
     3121 ccggcaaagt gatcaccgtt tattccaaac ccatgatggt gcccggctcc caggctgtaa
     3181 ctgaatttga caattacacc gttgacagtg taagtgtaaa ggggcgccac gtcgtgaaaa
     3241 acaagagcac cagttctgta ctcatcatca ccaaactggt ggtgaatggc caactcatca
     3301 agcctaatgg caactacatc aagtgggatg cagagcatac gcaaacgcaa gtggccggcc
     3361 ttggcactcc agctttcccc cgcgatgatg aatggtctat caccggtggc gcaaggggcg
     3421 aaaccaagcg tggcactaac ctcattgcat ggagccgcat tattgtagag ccactgcaca
     3481 aggccttcac ctgccgctgg atcgataagg gcgtggtaaa aattacccgc aacgacaaag
     3541 aagccaggct gaattttggc aacggcacct gcgacaacct ggccaccatc accgttaatg
     3601 gcgttacccg cgaaatcaaa ctgaaataat ctcaccgctc actttgggat cttaaccacc
     3661 ctcctgcaac cggcttcttt tgaggccggt tgttgtttgc agtgtatttt gcagccaaag
     3721 ctttgtgttt ccatgagaac ctgtttcttg ctaacatttt tactggtgaa cctgcacacg
     3781 atgctgaggt cacaatcaac aagggctaat gaagaatatg cccgtgaatt agaaacatgg
     3841 aacaaagcaa gggtagccta cctgaaatca gataccggct ggctgaacct ggccggcctt
     3901 ttttggctgc aacccgggca caacagcatc ggcagtaccg atacttctca cgttctgatc
     3961 aaaggcagtg aaattcccgg ccatgcaggc accctgtggc tggccgatgg caaagtgacc
     4021 ttgctggatc atggttcaaa aatgttcaaa gccaatggac agcccatcca ggagaaggtc
     4081 atctttcctt ccggcgaagg aaagcccacc actgtagaca ttgggcatta ccgcttccac
     4141 atcatccgtc gtgattcaaa actgggtgtg cgcctccgcg atttgcagca tccggcgttg
     4201 cagtccttta acggtgcaga acgctacccg gccgatacgc aataccgtgt aatggccacc
     4261 ctcattcccg caggacctta caaaaccata cccgtaacca atgtactggg gcaaaccacc
     4321 caacagccat cgccaggcac cctgatattc acccttaaag gcaggcaata cgcattgcag
     4381 acactgctgg aagaaggcaa actgttcata gtatttggcg atgaaacgaa cgctgatgaa
     4441 acttatggcg ccgggcgttt tttgtatgct gaccaacccg attcttcggg aagggttttg
     4501 ctggacttca acaaagcgct caatccgcct tgtgctttta cgccctttgc tacctgtccg
     4561 ctgccaccca aaggaaacca aatgcctctc gccatcaggg ctggagaaaa gaactatggg
     4621 caccactaag caataagtca gtcgggcaag actgaactgg tgagcccttg ttgcttcagc
     4681 cattccaatg tgagcggcaa tgccactcgc aatctctcga atgccttcgc actgtcgtga
     4741 aaaacgataa tgcttccggg ccgggtattt tttctcaaag ccgcgaagca ctgctcccct
     4801 gttcggctgg tatcaaagtc gcccgtcagt acactccaca ttaccagttt catggaggga
     4861 aatgcattcc tgatagcatg ggcgtgtgca gatctgatct ggccgtaagg tggcctgaaa
     4921 agctcagaac tgatcagttc agccgcctct ttcacatcct tcaaatagtc gtccgctgtt
     4981 gcctgcttcg cattcaaatg atgcatggta tgattgccca ccgaatgccc acgcttcagt
     5041 atgtcagcca tgatgtccgg atgatttgcc acattctttc cgatacagaa aaaagtgcct
     5101 ttcataccgc aggcatcgag ctgatccagc acaaagggag ttgcgtccgg atgggg
//
LOCUS       DATIQF010000003         7238 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_76058, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000003 DATIQF010000000
VERSION     DATIQF010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7238
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76058"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1321)
                     /locus_tag="VLL95_00035"
     CDS             complement(<1..1321)
                     /locus_tag="VLL95_00035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37274.1"
                     /translation="MGKAITRILLVLLLLGHWPKLVQAQATIGRQGTPFTGAPGITMT
                     VDEIIKIGAGKVRLQSLKSRDELSTKTTRNPGHSPNALPGNIYPKGGSPVDMVQNNTQ
                     SFHSNFSALDAFENSVPITPPDCMGDIGPTQVCIASNNGIKWYPKPTVCDAPLTTSNT
                     FGTSLLPDPTVNIYIEDFFASVSGANNDPLISVTDPHVHYDRLSQRWFIVAITTAAAS
                     NRIMIAVSSGPTITGTTSFTFFQFAHDVDASGTDPDKGEFCDYPTLGVDKNALYIGGL
                     IFGSVTGSFKGTSAYVVRKSSLTGGGPLVFTAFRQLGTANSGMFCAQGVHNDDPAADR
                     GYFVAVNAVNFGQLDYLVVSNPGGTPSITPGIIDVPDTDFPKDVSAKGSTKKLDAADD
                     RLLNAHLVKNKLNGSSSIWTSHNIGVNSAGLSSGAVLDRSAVRWYQLN"
     gene            complement(1419..2627)
                     /gene="lysA"
                     /locus_tag="VLL95_00040"
     CDS             complement(1419..2627)
                     /gene="lysA"
                     /locus_tag="VLL95_00040"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR01048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HSR37275.1"
                     /translation="MEQHLSDAQLLELAKEYGTPLYVYNADKISDQYQKLTTSFAGQH
                     VRFFYASKALTNPHVLKHLVKLGAGIDCSSINEVKLALYAGATPDQLLYTSNGIAFDE
                     IVEAVSLGIHINIDSLSNLEKFGRKYGHSYPVGLRLRPNIMAGGNLKISTGHDKSKFG
                     IPVDQVDQIVALVQKLNIHINCLHIHTGSEIKNVEVFVKGTEVLFDIVPKFPELQYID
                     LGGGFKVSYRKGDHITEIDLLAEKVGEAFAAKRNAKGEPFQVWFEPGKFLVSECGYFV
                     TSVNVIKETSAATFVSVNSGFNHLIRPMFYDSYHFIRNISNPAGEEKQYAVVGNICET
                     DTFAWDRKLNEVREGDCLVFFNAGAYGFEMSSNFNSRFKPAEVLVEGGKAKLIRRREQ
                     FDDLLRNIPQ"
     gene            complement(2706..3533)
                     /gene="scpB"
                     /locus_tag="VLL95_00045"
     CDS             complement(2706..3533)
                     /gene="scpB"
                     /locus_tag="VLL95_00045"
                     /inference="COORDINATES: protein motif:HMM:TIGR00281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HSR37276.1"
                     /translation="MELSVIIPHIEALIFASEKPLTTLDLVELVNNALGFMEERATLD
                     QVESAMEAVREKYSSEFYPFEIRESGGGWQFLTKGSYHKTVALLNGDKFLKRLSTAAL
                     ETLAIIAYKQPITKGEIENIRGVNCDYAVQKLLEKELVIITGRKEDAPGHPLVYATSK
                     TFMDYFGINSPEDLPKLSDIMPIDAVMPTAIGESNPVDEDLPLEEELDDNRLAVNANG
                     EMEEIQDAADAMEEEASSEFPVDQPEETNPDNEGESAADDLANESNTGDEEKDDPEV"
     gene            complement(3646..4515)
                     /gene="atpG"
                     /locus_tag="VLL95_00050"
     CDS             complement(3646..4515)
                     /gene="atpG"
                     /locus_tag="VLL95_00050"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit gamma"
                     /protein_id="HSR37277.1"
                     /translation="MSGALKEVRNRIKSVQSTQQITKAMKMVSAAKLRRAQDNIQQMR
                     PYAKKLQEMLTNIVSNTEMEVGSALTLERPAEKVLLIVITSDRGLCGGYNANLVKLAK
                     STIKEQYAGKQVAVWNIGKKGWESMSKQGFKTDAAFKDIFLDLRFETVQACAKAAVEA
                     FLNKEFDVVEIVYSEFKNAATQRFKVERFLPITKVEVKQGATKADFIFEPNKEALIAE
                     LMPKILNTQLYKAILDASASEHGARMTAMDKASENANELLKTLKISYNRARQAAITTE
                     LTEIVSGAAALQG"
     gene            complement(4702..5214)
                     /locus_tag="VLL95_00055"
     CDS             complement(4702..5214)
                     /locus_tag="VLL95_00055"
                     /inference="COORDINATES: protein motif:HMM:NF025679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4382 domain-containing protein"
                     /protein_id="HSR37278.1"
                     /translation="MKKILVFASLVAVLAFWACSKESDSRNQSQLSIRLTDNPFNASA
                     VNVDILKVRVNFRGDDTGWVDLETKAGIYNLLKLQNGVDTLLAQGTVPADTLKEIRFV
                     LGNRNSIKIGTDSFPLTIPSGQESGLKIKLSKKLNATLENVVVDFDAALSIHQTGNGK
                     YMLKPVLKIK"
     gene            complement(5310..5807)
                     /locus_tag="VLL95_00060"
     CDS             complement(5310..5807)
                     /locus_tag="VLL95_00060"
                     /inference="COORDINATES: protein motif:HMM:NF024230.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HSR37279.1"
                     /translation="MEMLLVILAKAFWCGWAALGFSLLFNAPARALLPVWICGFLAGL
                     VKFSLLHPALGAGIIMASFLASLAIGLVSIPVAHLRHVTPMIFAIPAVIPLVPGTFAY
                     RTMLGLMKLAGKVGADYATTLDETVHNGVTTLFIILALSLGAALPMHIMRKESVKNIG
                     KGRAA"
     gene            complement(5810..6583)
                     /locus_tag="VLL95_00065"
     CDS             complement(5810..6583)
                     /locus_tag="VLL95_00065"
                     /inference="COORDINATES: protein motif:HMM:NF018448.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HSR37280.1"
                     /translation="MDTKRSFSPEALGPLLLDIGASLLQSGASSKRVYITMKRMAAVS
                     SYEPHIAIGPHAVALTLNDEGSKTVYSATHDIPAIGVNFKIISGISRMSWDFVETTIN
                     LVQARAELERLEQLPHYSRWLILPLVALAGSAFCFTFGGGWQEMMITFGATFFGLFLK
                     QELVRKKFNAYIVTFLSAVAAAVFTGLAFKMGFGQQVEHALSTCVLFLVPGVPLIISF
                     TDLVDGYIINGIHRGINALMHAMAIAFGLALTLYLLNLH"
     gene            7058..>7238
                     /locus_tag="VLL95_00070"
     CDS             7058..>7238
                     /locus_tag="VLL95_00070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37281.1"
                     /translation="MSTPTPALKVKANEFEFLIDKATALQADIVKKSNAEFNIIHNGR
                     SANAIILESDVTAKHL"
BASE COUNT         1783 a         1830 c         1677 g         1948 t
ORIGIN      
        1 cattcaactg ataccacctt accgctgaac ggtcgagaac agcgcctgat gaaaggccgg
       61 cactgttgac cccaatattg tgagaagtcc aaatggacga agatccattc agtttattct
      121 taaccaggtg tgcattgaga agtcggtcgt cggcagcatc aagttttttg gtacttcctt
      181 tggcagatac atcttttggg aaatcagtat cgggcacatc aataatgccc ggggtaatac
      241 tgggtgttcc ccccgggttg gatactacca aataatcgag ttgcccaaaa ttcacggcgt
      301 ttaccgcaac aaaataaccc ctatcggctg caggatcatc gttgtgaacg ccttgcgcac
      361 agaacattcc ggaattcgcg gtccccaact gtcggaaggc agtgaatacc aaaggcccgc
      421 cacctgtaag agaagacttg cgtaccacat aggcactggt gcctttgaag gatccagtga
      481 cagaaccaaa aatgagcccg ccaatgtata atgcattttt atcgacgccc aaggtagggt
      541 aatcacaaaa ctctcctttg tcaggatcgg taccacttgc atccacatcg tgggcaaact
      601 ggaaaaaggt aaatgatgtg gttccggtaa tggtaggacc actgcttacg gctatcatga
      661 tcctgttgct ggctgcagcc gttgttattg ccacaataaa ccatctttgc gaaagacgat
      721 cgtagtgaac atgcgggtcg gttacactta tcaacggatc gttatttgca ccgcttaccg
      781 atgcgaaaaa atcttcgata tagatattaa cagtagggtc gggcaatagc gacgttccaa
      841 atgtattact tgtggtaagc ggcgcatcac aaacggtggg ctttggatac catttgatcc
      901 cattattaga agcaatacaa acttgagtag gacctatgtc gcccatacaa tcaggtggtg
      961 taatgggtac actgttttca aaagcatcta gcgcagagaa gttggaatgg aaactctgtg
     1021 tattattctg caccatatcc accgggctgc ctccctttgg gtaaatattg cccggcagcg
     1081 cattgggcga atggccgggg ttgcgtgtgg ttttggtaga cagttcatcc ctgctcttca
     1141 ggctttggag ccttactttg ccggctccaa ttttaatgat ctcatccacc gtcattgtta
     1201 tgcctggtgc accagtaaat ggtgttccct gccgaccaat ggtcgcttgt gcctgcacca
     1261 atttgggcca atgacccaac aatagaagca ccaacaaaat gcgagtgatt gccttcccca
     1321 tagatttatt ttcaatagga aaaataatgc aaaaccccaa gcgaatgcct ggggttcaat
     1381 aaagtttaaa aaattccggg gaactcccgt gtctcaaatc attgtggaat gtttcgcagc
     1441 aaatcatcga actgctccct cctgcgtatc aatttggctt ttccgccctc caccaatact
     1501 tcggcaggct tgaaacggct gttgaaattg ctgctcatct caaagccata ggcaccggca
     1561 ttgaagaaca ccaggcagtc gccttcccgc acttcattca gcttcctgtc ccaggcaaaa
     1621 gtgtcggttt cgcagatatt cccaactacc gcatattgct tttcctcacc ggcagggttg
     1681 ctgatgttcc ggatgaaatg gtaactgtcg taaaacatgg gccttatgag gtgattgaag
     1741 ccgctgttga cgctcacaaa ggtggcggca ctggtttcct ttatcacatt aacgctggta
     1801 acaaaatagc cgcattcgct caccaggaac ttgcctggct caaaccatac ctggaagggt
     1861 tcgccttttg cattgcgttt ggcagcaaat gcttcgccta ccttctcggc caacaagtcg
     1921 atttcggtaa tatggtcgcc ctttcggtaa gacaccttga acccgccccc gagatcaatg
     1981 tattgcaatt caggaaactt cggaactata tcaaacaata cctccgttcc ttttacaaac
     2041 acttccacat tctttatttc gctgccggtg tgaatgtgca ggcagttgat atggatattc
     2101 agtttctgca ccagcgccac tatttggtcc acctggtcaa ccgggatacc gaatttgctt
     2161 ttgtcgtggc cggttgaaat tttcagattg ccccccgcca tgatgttggg tcgcagccga
     2221 agccccaccg ggtagctgtg accgtatttc ctgccaaact tttccaggtt gctcaggctg
     2281 tcgatattga tgtgaatgcc cagggaaacg gcttcaacaa tttcatcaaa cgcaatgcca
     2341 ttggaggtgt acaacaattg atccggcgta gcgccggcat acaaagccag ctttacttcg
     2401 ttgatggaac tgcagtcgat acctgctccc agtttcacca aatgtttcag tacatgcggg
     2461 ttggtcaatg ctttgctggc atagaaaaaa cgcacatgct gcccggcaaa tgacgtggtg
     2521 agtttttggt attgatcact gattttatcg gcattataaa cgtacagcgg cgtaccgtac
     2581 tctttggcta attccagcaa ttgcgcatcg ctcaggtgtt gttccatttc tttacactca
     2641 aactttacaa taaacccgcc agtggcggcg ggtggtaata ctctttttta atcaaacaag
     2701 ccgctttaga cttccggatc gtccttttcc tcatccccag tgttgctttc gttggccaaa
     2761 tcgtcagccg ctgattcgcc ttcattatcc gggtttgttt cttcaggctg gtcaacaggg
     2821 aattcactgc ttgcttcttc ctccatggca tcggcagcat cctggatttc ttccatttcg
     2881 ccattggcat ttacggccag cctgttgtcg tccaattctt cttccaaagg caggtcttca
     2941 tccacgggat tcgattcgcc gatggcagtg ggcattacgg catctattgg cattatatcg
     3001 ctcagtttgg gaagatcctc cgggctgttg ataccaaaat aatccatgaa ggttttgctg
     3061 gtagcataca ccagcggatg gcccggtgca tcctcctttc ttccggtaat gatcaccagc
     3121 tctttttcca gcaacttctg cactgcatag tcgcagttta cgccacggat gttttcaatt
     3181 tctcctttgg taatgggttg cttgtaagca ataatggcca gtgtttcaag ggcagctgtg
     3241 ctcagccgtt tcaaaaactt atcgccattg agcaaagcca cggttttgtg ataacttcct
     3301 ttggtcagaa actgccaacc gccgccgctt tccctgatct cgaacgggta gaattcggaa
     3361 ctgtattttt cgcgtacggc ttccatggcg ctttccacct ggtcgagggt ggcacgttct
     3421 tccatgaaac ccaacgcatt gttcaccaat tccaccaggt cgagtgttgt caatggcttt
     3481 tcgctggcaa aaatgagtgc ctcaatgtgg ggtataatga ccgatagttc catattctgc
     3541 ccttgcaggt tctgttgaat tgattgcaaa taaaaatccc tgcaaatatg cgacttcgcc
     3601 atattgcagg gagatattta tttccacctc cgggggcgta ttttcttagc cttgcaaggc
     3661 agctgcacca ctcacaattt cggtcagttc ggtggtaatg gcagcctggc gtgcccggtt
     3721 gtagctgatc ttcaaagttt tcagcagttc attggcattt tcgctggcct tatccatggc
     3781 ggtcatacgg gcgccgtgct cgctggcgct ggcatcaagg atggccttgt acaattgcgt
     3841 attgaggatt ttaggcatca gttcggcaat gagggcctct ttgttgggct caaaaatgaa
     3901 atcggccttg gtagcgcctt gtttgacttc cactttggtg ataggcagaa aacgctccac
     3961 tttgaaacgc tgcgtggccg catttttgaa ttcgctgtac acaatctcca ccacatcaaa
     4021 ctctttgttg aggaaggcct caacagccgc tttggcacaa gcctgaacgg tttcgaaacg
     4081 cagatccagg aaaatgtctt tgaaggcagc atctgtcttg aagccctgct tcgacatgct
     4141 ttcccagccc tttttgccaa tattccaaac agctacctgc ttgccggcgt actgttcttt
     4201 gatggtagat tttgccagtt ttaccaggtt ggcattgtag ccgccgcaaa ggccacggtc
     4261 gctggtgatg acgatgagca gcactttttc ggcggggcgc tccagtgtaa gcgcactgcc
     4321 cacttccatt tcggtattgc tcacaatgtt ggtcagcatt tcctgcagtt ttttggcata
     4381 gggcctcatt tgctggatgt tgtcctgggc acggcgcagc ttggctgcac ttaccatttt
     4441 cattgccttg gtaatctgct gggtactctg tacactcttt attcggttgc gaacctcttt
     4501 taatgcacca ctcattcgga aaacgctttt gggcggcaaa agtaaggcaa ggaggcgagg
     4561 aaacaagggt ggatttagcc tttgaggcca ggaaataacc aacaccctgt gaatgtttgg
     4621 gcaatatggc ctgtgggact acaaaaaagc gctccggaga accggaacgc tttgcgttta
     4681 tagccgctta actctacttg cctattttat tttcagtacg ggtttcagca tgtatttgcc
     4741 attgccggtc tgatgaatgg acagcgccgc gtcaaaatca accaccacat tttcaagggt
     4801 ggcgttcagc tttttggaca gctttatttt caggccgctt tcctggccgc ttggtattgt
     4861 cagcgggaat gaatctgtcc caatctttat ggaattgcgg ttgcccaaaa caaacctgat
     4921 ctccttgagg gtgtcggcag gaactgttcc ctgcgccagc aaagtgtcta ccccgttctg
     4981 gagttttaat aagttgtaaa tgcccgcttt tgtttcaagg tctacccagc cggtatcgtc
     5041 acccctgaag tttacccgaa ctttcaggat gtccacattt actgctgaag cgttgaaggg
     5101 attgtcggta aggcgtatgc ttagctggct ttgattgcgg gagtctgact cctttgaaca
     5161 agcccaaaat gcaagcactg caaccagtga tgcaaataca agtatcttct tcatattctt
     5221 tgtttgatct ggaggaacga ttttcctctt taatggtatc caaatgcgtg ccagaaaagc
     5281 aaaggcagga aaactcgttt gggggcggtt tatgccgccc tccccttgcc gatgttcttt
     5341 actgattctt tccgcatgat gtgcatgggc aatgccgccc cgagtgatag cgccaggata
     5401 atgaacaaag tggtaacacc attgtgcacg gtttcgtcaa gtgttgtggc atagtcggcg
     5461 cctactttgc cggccagttt cattaatccc agcatggttc ggtaggcaaa agtgccgggc
     5521 accaagggga taactgcggg tatggcaaaa atcataggtg ttacatgcct caggtgagca
     5581 acagggatac tgacaaggcc aatagccagc gacgccagga aagaagccat gatgatgcct
     5641 gcccccaaag caggatgcaa caaactgaac ttgaccaatc ctgccaggaa accgcagatc
     5701 caaacaggca acaacgccct tgccggcgca ttgaagagca ggctgaaacc cagtgcggcc
     5761 caaccacacc aaaatgcctt cgccaatatg accagtaaca tttccattat cagtgcaaat
     5821 tcaaaaggta aagggtgagt gccagcccaa atgcaatggc catggcatgc atcaacgcgt
     5881 taatgccccg gtgaatacca ttgatgatat agccatctac caggtcggta aaagagatga
     5941 tcagcggaac acccggcacc aaaaaaagca cacaggtcga cagtgcatgc tccacctgct
     6001 ggccaaaccc cattttgaag gccaaaccgg taaaaacagc cgcagcaaca gcgctgagaa
     6061 aggtgacgat ataggcattg aattttttcc tgaccaattc ctgcttcagg aagagcccga
     6121 agaatgtggc gccaaaagtg atcatcattt cctgccatcc gccgccaaac gtgaaacaaa
     6181 atgccgagcc agccagtgct accaaaggca gaatcaacca gcgggaataa tgcggcaatt
     6241 gctccagcct ttccaattcg gcacgggctt gaaccaggtt gattgttgtc tccacaaaat
     6301 cccagctcat ccggctgatg cctgagatga tcttgaaatt gacaccgatt gccggaatat
     6361 catgcgtggc gctgtatacg gtcttgcttc cttcatcatt tagtgtaagc gctaccgcat
     6421 gcggtccgat ggcaatgtgt ggctcgtacg acgaaaccgc agccattctt ttcatggtga
     6481 tgtatacccg tttgctgctg gcgcccgact gcaataagct ggcacctata tccagcaaca
     6541 aagggcccaa tgcttcggga gaaaatgacc ttttcgtatc catgatcatc acaaacctag
     6601 atgccgcaaa caatcgaaaa aaggatattt gttaggtatt tgcaggattg caaaacctta
     6661 ttttcccaag aattttaatc gtcttcctgt ctttctcagc caacttggct cagctgtcag
     6721 cgcatttcat tcgcaatgaa agggtcgtcc ctgcccgaag aactttggtc aggcgggggt
     6781 tcaaatccga tagttggctc tccattctat ttacgcttgc catcaggcat cgactcactg
     6841 catcattgcc ttttcacttg ttcaaaaaaa gacaatgcct tcattcatca tgttgaatga
     6901 ccattatcat cctttggcgc aggcaaaaca ttgaacttgg tgctccaatt gaacagagta
     6961 ctcatgagtg ctaaacaatt tccgattgca tgccatgttt tcaccggtat gcatttttca
     7021 agccctttcc attttcctgt acaacaatcg agtgtttatg tcaaccccta ctccagcctt
     7081 gaaagtaaag gccaatgaat tcgaatttct gatcgacaag gcaacagccc tgcaggccga
     7141 tattgtaaaa aagtcaaacg ctgaattcaa catcattcac aacggcagat cggccaacgc
     7201 catcattctt gaatcagatg ttacggcaaa gcatctta
//
LOCUS       DATIQF010000004         2478 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_106498,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000004 DATIQF010000000
VERSION     DATIQF010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106498"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..744)
                     /locus_tag="VLL95_00075"
     CDS             complement(<1..744)
                     /locus_tag="VLL95_00075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37282.1"
                     /translation="MKEANEITLAEVLQSLQQFWRYLLRKWYLLLLAGVLGGVTGILY
                     ATATKPKYQSKMSFALEESGGALSGAISLAAEFGLNIGSGSRDIFSGDNILAILTSRK
                     IVEQTLLSVDTVSGKPITMANYWLQVHKSSKTASEDNAAKVDFPVGMPVSKFSYLQDS
                     ILFVIQKSVVENIAAGRRDKKLNVFDISYTSPDERFTKVMTERLVQQTIEYYTELRTR
                     RSLKLLNNLEARVAEMKGSAQGAIRGRAQI"
     gene            complement(774..1538)
                     /locus_tag="VLL95_00080"
     CDS             complement(774..1538)
                     /locus_tag="VLL95_00080"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HSR37283.1"
                     /translation="MKHQIKRLLQWLLGMDNYLLLFSWLSVKRTLNLGSDAELRHFSQ
                     VLSGQRGCIIDVGANIGNTTVPLAIWNTASTVHAFEPVPLNLNVLNKVIGLYRLQNIV
                     VHNVALGESTGEINMVVPVEGRVLQQGLSHVVGTTESSHAEGLTYTVKMHRLDDIWAF
                     SEGNNVIGIKIDVENFELEFLKGASAVIRHYRPVVYCEIWNNHKKPITMALMASLGYQ
                     CYVFRNGKLEKDDGNDNLNYFFLPDTAAAPSGILQS"
     gene            complement(1569..>2478)
                     /locus_tag="VLL95_00085"
     CDS             complement(1569..>2478)
                     /locus_tag="VLL95_00085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37284.1"
                     /translation="WFLACGLGIVLKSAGQVVRYDDKRQRLFYCMSNSAPQFGEVLKR
                     AGLRNCIYFSGRDIDPEQTGTLNKAALKVSVDRLVPDTAFAGILVLDWEDSLYNRLKF
                     GGNIDDKGFDAAVDEFIRVLRYAKTLRPRAQWAYWDIPMSIFWVDVDTLWRRRIDRIS
                     PLLKEVDILMPHLYDYFPTGVRSGREDTAYIVQILTKTLEMAVKFQKPVLPFIWHRYS
                     DAIPETGLKKMDEKEFLQQLRLMRSVTYKRKKINGVIWWQEDLYFLNISAPNITKEME
                     GIERDKYRDDVLLKYWSLARQVFLDE"
BASE COUNT          657 a          653 c          485 g          683 t
ORIGIN      
        1 gatttgggcc ctgccacgaa tggcgccctg agcagatcct ttcatttcag ccacccttgc
       61 ctccaggttg ttgagcaact taagggacct ccgtgttctt aattctgtat aatattctat
      121 ggtctgttgc accaatcgct ccgtcattac tttggtaaaa cgctcatctg gcgatgtata
      181 ggagatgtcg aatacattca gttttttgtc ccgacgacca gcggcaatat tctcaaccac
      241 cgatttttgt attacaaaca gaatactgtc ctgcaaataa gagaacttgc tgacgggcat
      301 cccaaccgga aagtcaactt ttgcggcgtt gtcctcgctg gccgtttttg aggatttgtg
      361 cacctggagc caataattgg ccatagtgat gggcttgcca gaaaccgtat ctacactcag
      421 caatgtttgc tccactattt tccggctggt aagtatggcc agtatattgt ccccggaaaa
      481 aatatccctg cttcccgacc cgatattcag tccaaattcc gcagccaaac tgatagcgcc
      541 actcaaggca ccgccgcttt cttcgagggc aaatgacatt tttgactggt attttggctt
      601 ggtagcagtg gcgtacaata taccagtcac tccgcctaga actcctgcca ataatagcaa
      661 ataccatttg cgcaacaggt aacgccagaa ttgctgcaaa ctctgcaaaa cttcggccag
      721 cgttatttca tttgcttctt tcatataatg caattcatgc tttgagactt aatttatgat
      781 tgaagaatgc ctgaaggagc agcagctgtg tcaggcagga aaaaatagtt taaattatca
      841 ttcccatcat ctttttccag cttaccattc ctgaaaacat aacactggta tcccaggctg
      901 gccatcagag ccatggtaat cggtttcttg tggttgttcc agatttcaca atagaccacc
      961 ggcctgtaat gccggataac agcagatgct cctttcagaa attcaagttc gaaattctca
     1021 acatcaatct ttattccaat cacattgttt ccttcactaa aagcccaaat atcatcgagt
     1081 cggtgcattt tcaccgtgta agttaaacct tctgcatgcg atgattctgt agttccgact
     1141 acatggctca acccttgctg cagcaccctt ccttccacag gcaccaccat gtttatttcc
     1201 ccagtgcttt cgcccaaagc aacattgtgc acaacaatgt tctgaagcct gtacaaacca
     1261 atcaccttat tcaacacgtt caggttaagc ggcaccggtt caaatgcgtg aactgtggaa
     1321 gcggtattcc aaattgccaa tggcacagtg gtattcccga tgttcgcccc cacatcaata
     1381 atgcaacctc tttgcccgga taatacctgg gaaaaatgcc ggagctccgc gtcagaaccc
     1441 agattcagtg tacgcttaac agacagccat gaaaataaca gcaggtagtt gtccatcccc
     1501 agcaaccatt gcaacaatcg ttttatttgg tgtttcattt cctttcttcc tcttgaaata
     1561 tgcattaatc attcatctaa aaaaacctgc cgtgccaatg accaatactt cagaagtaca
     1621 tcatcgcggt acttgtcacg ctctataccc tccatttctt tggtgatatt gggtgccgaa
     1681 atattcagaa aatacaggtc ttcctgccac caaataacgc catttatttt tttccgtttg
     1741 tacgttactg agcgcatcag ccgcaactgc tgcagaaatt ctttctcgtc catttttttc
     1801 aaccccgtct ccggtatggc atctgaataa cggtgccaaa taaaaggcaa tacgggtttc
     1861 tgaaacttta ctgccatttc aagggttttg gtcaggattt gcacgatata ggctgtatcc
     1921 tccctgccac tgcgcacccc agtgggaaag taatcataca aatgaggcat caaaatatct
     1981 acctctttca gtagtggcga aatccggtcg attctgcggc gccaaagggt atcaacatcc
     2041 acccagaata tggacatggg tatatcccaa taagcccatt gagcccgggg gcgcagtgtt
     2101 ttggcgtatc gcaatacccg aataaattca tctacagctg catcaaatcc tttgtcatcg
     2161 atattgccgc caaactttag acggttgtac agggaatcct cccaatccag tacgagaatg
     2221 cctgcaaagg cggtatcagg taccaatcga tctaccgaga ctttcaaagc tgccttattc
     2281 aatgttcccg tttgttcggg atcaatatca cggccagaaa aataaatgca gttccgcagt
     2341 ccggcccgct ttagcacctc accaaactgg ggggcactat tgctcatgca ataaaacagg
     2401 cgctgcctct tgtcgtcgta cctcaccacc tgtccggcac ttttgaggac aatgcccaaa
     2461 ccacaggcca aaaaccac
//
LOCUS       DATIQF010000005         2735 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_102, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000005 DATIQF010000000
VERSION     DATIQF010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2735
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1316
                     /locus_tag="VLL95_00090"
     CDS             <1..1316
                     /locus_tag="VLL95_00090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37285.1"
                     /translation="INSIRDTVMSDLQGVKGRAQKMGKEFQASAQRMGEEMKESFSTA
                     GSNVASDIRQSSRSSRGIGNAIAILVKAFVYFILACIGFALFVALIALLGAGVGVLPV
                     HDFVLQGGSQYLFALGSIVLFIGVPIISILVWFIRRLMKVRTHNKYLGYSFTALWLLG
                     LFCVIGLLGSLNRGFSSQVGIRNDVNIEQPAGNKLVVQVEEPNYAYYDGWFDMDGILS
                     IDRDTLYVNTVRVNVVKSKDSLYHVHLMKISRGRDREQAKQLAERIEFTVTQKDSLLL
                     LPESFKITKNDKWRNQRVIVVIEVPVGKEIYMGDAVNDYEYFNVEFGQRRNWRIDWNR
                     EWEDGEYWEEEKTMKMTNEGLEWDKRRRDNNGEWNNEPSNPEPGQKTDTLVKPQPATV
                     DTVYKYKKAVTVVLPSENADQETADPSSNGNRRITNPLASVMRLF"
     gene            1476..2156
                     /locus_tag="VLL95_00095"
     CDS             1476..2156
                     /locus_tag="VLL95_00095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37286.1"
                     /translation="MVGLLLLAGCSTIEQSTIHGLTEGKYKAKAEGRKQPVYAVVDAD
                     SIRLYPLLSARPLKPDTTLVQTFCFTQSGSSLPPRLSKTSLDIDLTTVLLKYRFQQSN
                     LPNQVNANLNVNLYVGWRKDYYSFHDQRSPLNVSSRKESHFQFDVGLFAGFGISAINP
                     TVTNNQTDKEYDGFVFQKGIAGFVGMKRITLGLSLGFDNLLDPNKNIWAYQQKPWIGL
                     MLGINLGE"
     gene            2313..>2735
                     /locus_tag="VLL95_00100"
     CDS             2313..>2735
                     /locus_tag="VLL95_00100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37287.1"
                     /translation="MKAFKKFLKWTVIVLVILIGGLLVAIFAKQSQKFEAAYPENIKA
                     SKDSAVIARGEYLVYGPAHCGNCHSPMENQQRINAGEHLPLEGGFVFDLPIGKIYSPN
                     ITPDEETGIGKLTDAEIARAFRSGVGHDGRALFDFMPFQ"
BASE COUNT          742 a          673 c          687 g          633 t
ORIGIN      
        1 acatcaacag cattcgcgat accgtaatga gcgatttgca aggcgtgaaa ggccgtgccc
       61 agaaaatggg aaaagagttc caggcatcgg ctcagcgtat gggtgaagaa atgaaggaaa
      121 gcttcagcac tgctggcagc aatgtagcct ctgacatcag gcaaagctca cgaagcagcc
      181 gcggcattgg caacgctatc gccatcctgg taaaagcttt cgtatacttc atcctggcct
      241 gtatcgggtt tgcgttgttc gtagcgctga tcgccctgct gggtgctggc gtgggcgtat
      301 tgcccgtcca tgacttcgtg ctgcagggag gttcacaata tttatttgca ctcggcagta
      361 ttgtactgtt cataggtgta cccatcatca gcatcctggt ttggtttatc cgccgcctga
      421 tgaaagtgcg tacccacaat aaataccttg gctattcatt tactgcattg tggctgctcg
      481 ggctcttttg tgtcatcggg ttgctgggca gcttgaatcg tggattcagc agccaggtgg
      541 gcatcaggaa cgatgtgaac attgaacagc ccgccggcaa caaactggta gtgcaggtgg
      601 aagaacccaa ctacgcctac tacgatggtt ggtttgacat ggacggcatc ctcagcatcg
      661 accgcgacac actgtatgta aacacggtac gtgtgaatgt ggtgaagagc aaggatagct
      721 tgtaccacgt gcacctgatg aagatcagcc gcggccgcga ccgcgaacag gcgaaacaac
      781 tggccgaaag aatagagttt accgtaacac aaaaggacag cctgctgctg ctgcctgaat
      841 cattcaagat caccaagaat gataagtggc gcaaccaaag agtgattgtg gtaattgaag
      901 tgccggtagg caaagagatc tacatgggcg acgccgtgaa cgactatgaa tatttcaacg
      961 tggaatttgg tcaacgccgc aactggcgca ttgattggaa ccgcgaatgg gaagacggtg
     1021 aatactggga agaagaaaag accatgaaaa tgaccaatga aggtttagag tgggacaaac
     1081 gccgtcgcga caataacggc gaatggaaca atgaaccttc caatccggag cccggtcaga
     1141 aaaccgatac cctggtaaag ccacagcctg ctacggtgga cacagtttac aaatacaaaa
     1201 aggcagtgac cgttgtgctg ccctccgaaa atgccgacca ggaaaccgca gatccttcca
     1261 gcaatggaaa caggcgcatt accaatccgc tggcatctgt gatgagacta ttttaatccg
     1321 cgaaagcgaa tacgatactt attcagtatg gcccctgttg gtttctacca gcggggtttt
     1381 ttttatgtgc cttcattgcc gcttcgctga tataactcat aaaaccaaga ggcggggtgt
     1441 ggtagcttta atacatgact tggcaaccat actatatggt tggtcttctt ttgctggcag
     1501 gttgcagtac catcgagcaa agtaccatac acggccttac cgaaggcaaa tacaaagcaa
     1561 aggccgaagg caggaaacag cctgtctatg cagtggtgga tgcggacagc attcgtttgt
     1621 acccactact tagcgccagg ccactgaagc cggatactac ccttgtacaa acattttgct
     1681 ttacccagag tggaagcagc ctgccaccgc ggctgtccaa aacttcactg gacattgacc
     1741 ttaccacggt tctgctcaaa tacaggttcc aacaatccaa ccttcccaac caggtgaatg
     1801 ccaacctcaa cgtgaatctt tacgtgggat ggagaaaaga ttactacagt ttccacgatc
     1861 agcgatcgcc gctgaacgta agcagcagga aggagagcca ttttcaattt gatgtaggcc
     1921 tgtttgcagg ctttggaatt tcggccatca acccaacggt taccaacaac cagaccgaca
     1981 aggaatacga tggattcgtt tttcaaaaag gaatcgccgg gtttgtgggc atgaagcgca
     2041 tcacgctggg cttgagcctc ggcttcgata acctgcttga tcccaacaaa aacatctggg
     2101 cctatcaaca aaagccatgg attggattga tgctgggcat caacctgggt gaatgagccc
     2161 tcatgtgttg catcaaaacc acatgaaaat gcgatggctg attcttgcat tagtcattcc
     2221 atagccttac attcattttt tagtgcatgc gtcattccgt tttcccctgt cgcatgcact
     2281 cacgatccat cacctttaat ccaagcccca acatgaaagc attcaagaaa ttcctgaaat
     2341 ggacagtcat tgtgctggtc attcttattg gcggactact ggttgccatc tttgcgaaac
     2401 agagccagaa gtttgaagca gcctatcccg aaaacattaa ggccagcaaa gacagcgctg
     2461 taattgcccg gggagaatac ctcgtgtatg gcccggccca ctgtggcaac tgccactctc
     2521 ccatggaaaa tcagcaaaga ataaacgccg gcgagcacct gccgctggag ggtggttttg
     2581 tatttgacct gcccattgga aaaatttaca gccccaacat tacccctgat gaagaaacag
     2641 gaattggtaa gctgactgac gctgaaatag ccagggcctt ccgttcaggt gttggccacg
     2701 atggcagagc gctgtttgat ttcatgcctt tccag
//
LOCUS       DATIQF010000006         3083 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_60979, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000006 DATIQF010000000
VERSION     DATIQF010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3083
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60979"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2011)
                     /gene="katG"
                     /locus_tag="VLL95_00105"
     CDS             complement(<1..2011)
                     /gene="katG"
                     /locus_tag="VLL95_00105"
                     /EC_number="1.11.1.21"
                     /inference="COORDINATES: protein motif:HMM:TIGR00198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004096 - catalase activity [Evidence
                     IEA];
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="catalase/peroxidase HPI"
                     /protein_id="HSR37288.1"
                     /translation="MSNDLSKCPFHNGSMKMGGTSNKDWWPNQLNLNILRQHSSLSNP
                     MDKDFDYAEAFKSLDLAALKKDLAALMTNSQEWWPADYGQYGPFMIRMAWHSAGTYRI
                     QDGRGGAGSGTQRFAPLNSWPDNGNLDKARLLLWPIKQKYGNKISWADLMILAGNVAL
                     ETMGFKTFGFGGGREDVWQPEEDIYWGSETEWLGDKRYTGDRDLENPLAAVQMGLIYV
                     NPEGPNGNPDPIAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAADPGKYVGRE
                     PAAATMEEMSMGWKNTFGTGNAEYTITSGLEGAWTTTPAKWSHDYFKHLFEYEWELTK
                     SPAGAHQWVAKNSEATIPDAHIGGKFHKPFMLTTDLALRFDPAYEKVSRRFYENPDAF
                     ADAFARAWFKLTHRDMGPRNRYLGPEVPAEELIWQDPIPAVNHPLVNSSDVADLKAKI
                     LSSGLTVAELVTTAWASASTFRGSDKRGGANGARLRLAPQKYWEANNPVQLSKVLDVL
                     AGIQQAFNAAQSGGKQVSLADLIVLAGCAAIEKAAYEAGVSVVVPFTPGRTDASQEQT
                     DVESFAVLEPSADGFRNYAKGHAAYMAEHLLVDKAQLMTLTAPEMTALVGGMRVLGAN
                     YDGSKVGVLTQQPGVLSNDFFVNLLDLGTAWKSTSDKQELFEGRDR"
     gene            complement(2353..>3083)
                     /locus_tag="VLL95_00110"
     CDS             complement(2353..>3083)
                     /locus_tag="VLL95_00110"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HSR37289.1"
                     /translation="INPSGEYRFLEGAVWGRQFYLTAFDGAHIYALRADAPSDSIIAN
                     GIFFSGTAPGDRFRARRDEKAQLPALAPVAEMKPGEQYLRFRFPDLDSNMVSLQDPRF
                     RNKVVIVQLMGSWCPNCMDETKFLSEFYNGQSTRDVEIVSLAYELSTDFHRSASSLRK
                     FQHRFNVRYPMLINGARSADNDKAAKTLPQLTYIKYFPTTIFIDKRGRVRKVHNGFYG
                     PGAPDYHEAYKQSFFSTINELKAE"
BASE COUNT          708 a          812 c          834 g          729 t
ORIGIN      
        1 tgcggtcgcg gccttcaaac aattcctgtt tgtcggaagt cgatttccag gcagtgccga
       61 ggtccagcag gttcacaaag aaatcgttgc tcagcacacc gggctgttgt gtcagcacac
      121 ccaccttcga gccgtcatag ttggcaccca acacccgcat accacccacc agggctgtca
      181 tttcgggagc ggtcagggtc atcagttgtg ccttatctac cagcaaatgt tcggccatat
      241 aagcggcatg gcccttggcg tagttgcgga agccatcggc tgaaggttcc agcacggcaa
      301 aagactccac atcggtttgc tcctgcgaag catcggtgcg accaggcgta aagggcacca
      361 ctactgacac gcctgcttcg taggcggctt tttcgatagc ggcacagcct gccagcacga
      421 tcaggtcggc cagcgatacc tgcttgccac cactctgtgc agcgttaaag gcctgctgta
      481 tgccagcgag cacatccagt actttggaaa gctgaacagg gttgttggct tcccaatact
      541 tctggggcgc caggcgaagg cgggcaccat tggcgccacc acgcttgtcg ctgccacgga
      601 aggtggaagc agaagcccag gcagtagtta ccagttcggc cacggtcaag ccggaggaaa
      661 ggatctttgc tttgaggtcg gccacatcgc tgctgtttac cagcggatgg tttaccgccg
      721 gaatgggatc ctgccagatc agttcctctg ccggtacttc aggaccgagg tagcggttgc
      781 ggggacccat atcgcgatgc gtcagtttga accaggcacg ggcaaaagca tcagcaaaag
      841 catcggggtt ttcataaaaa cggcgcgaca ctttttcgta ggccggatca aaacgcaaag
      901 cgaggtcagt ggtcagcatg aatggcttat ggaacttgcc gccgatgtgc gcatcaggaa
      961 tggtggcctc ggaattttta gccacccact ggtgtgcacc ggccgggctc ttggtcaatt
     1021 cccattcgta ttcaaacagg tgcttgaaat aatcgtggct ccatttggca ggcgtggtgg
     1081 tccaggcgcc ttccaggcca ctggtaatgg tgtattcggc attgccggta ccaaaagtat
     1141 tcttccagcc catgctcatt tcttccatag tggctgcggc tggttcgcgg cctacatact
     1201 tgccgggatc ggcagcgccg tgggtcttac caaaagtgtg gccaccggct atcagggcca
     1261 cggtctcttc atcgttcatg gccatgcggg caaaggtttc gcggatgtcg cgggctgctg
     1321 caattgggtc agggttgcca ttaggacctt ccgggttcac atagatcaaa cccatctgta
     1381 ctgccgccag gggattttcg agatcacggt cgccggtata acgcttgtcg cccagccact
     1441 ctgtttctga tccccagtaa atgtcttctt caggctgcca tacatcttcg cggccaccac
     1501 caaagccaaa ggttttgaag cccatggttt ccagggccac gttaccggcc aggatcatca
     1561 ggtcggccca tgagatcttg ttgccgtatt tctgcttgat gggccacaac agcaagcggg
     1621 ctttgtcgag gttaccgttg tcgggccagc tgttcagggg tgcaaaacgc tgggtaccac
     1681 tgccggcacc accacgtcca tcctggatgc gataggtacc tgcactgtgc caggccatgc
     1741 ggatcatgaa aggaccatac tggccatagt cagcaggcca ccactcctgc gagttggtca
     1801 tcaacgcagc gagatccttt ttcaaagcag ccaggtccag gcttttgaaa gcttcagcat
     1861 aatcaaaatc cttgtccatg ggattggaca ggctggaatg ctggcgaaga atattcaggt
     1921 ttaactggtt gggccaccaa tctttgttgc tggtgccgcc cattttcata gagccattgt
     1981 gaaaagggca tttgctcagg tcgttactca ttgcattagt attttctaaa gtgataaaat
     2041 gaaggttgtc aggcaagcgt attttttgaa atagaatact gcaccaaagg cagccggaac
     2101 attttttcat accatgaggc ggataaaaaa tgtggcggtc agtccttccg ggactgcaag
     2161 tttacaaaac catgactgat aaattctatc aattattgtt atgctattat agtcgtggtc
     2221 aataattatt catgccacat ccggacgcaa aaaaaagaca cccttcggcg ttggaaaaag
     2281 ggtaaaaaca aatgcctgcc aacaggcgat ccgggtgaat ggacctaaaa atcagtgcct
     2341 atttcagtgg cgctattccg ccttcaactc attgatggta gagaaaaatg attgcttgta
     2401 agcttcatga taatcggggg caccgggacc gtaaaaaccg ttgtgcactt ttcgcacccg
     2461 gccccgcttg tcgataaaaa tggtggtggg gaagtatttg atataggtaa gctgcggcaa
     2521 tgttttggcc gccttatcat tatcggcact tcgggcaccg ttaatcagca tgggatacct
     2581 tacattaaac cggtgctgga atttgcgaag actgctggcc gaccggtgga aatcggtact
     2641 gagttcatag gccagcgaca cgatttcaac gtcgcgggtc gattgcccgt tgtaaaattc
     2701 actcaggaat ttggtttcgt ccatgcagtt ggggcaccag ctgcccatca gttgcacgat
     2761 cactactttg ttgcgaaacc ggggatcttg caggctgacc atgttgctgt ccaaatcggg
     2821 aaagcggaaa cggaggtatt gctccccggg cttcatttcc gctacagggg ccagtgccgg
     2881 caattgggct ttctcatccc gcctggccct gaatcggtcg cccggcgccg tgccagaaaa
     2941 gaaaatgccg ttggcaataa tactgtcgct tggtgcatcg gccctcagcg cataaatatg
     3001 cgcaccatca aaagccgtca ggtagaactg gcgaccccaa actgctcctt ccaaaaaacg
     3061 gtactcgccg ctggggttga tga
//
LOCUS       DATIQF010000007         2161 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_243435,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000007 DATIQF010000000
VERSION     DATIQF010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243435"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(18..1406)
                     /gene="rodA"
                     /locus_tag="VLL95_00115"
     CDS             complement(18..1406)
                     /gene="rodA"
                     /locus_tag="VLL95_00115"
                     /inference="COORDINATES: protein motif:HMM:NF037961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HSR37290.1"
                     /translation="MASPAADLLMAQNQRIISKGINWLPVIIYLVLVMIGLIAIFSVE
                     YRPEVSIIQSITGLKTNYSKQLLFFTICLVVGGFILLTDSKFFTATSNLFYALGIVLL
                     LATFVVGKEINGSHSWIPLGFMNLQPAETCKIFVSLALAKYLSRLETDFRKWRSHAIA
                     IALALTPAAFSILQNETGLALVYFAFFIPLYREGLPPAYLIIGASTAVLVVASVLVEP
                     NTLATILTVLGILTVWVMRRKIRREKRLLLLIVGVWGLCVGIQRFAVPFMFEKVMQPY
                     QVERIMSMFGKDYVPKDPAAAEALMKEKAKQGKIGKGGKKEENYNVKQSKIAIGSGGF
                     LGKGFLKGAVTQGDFVPEQHTDFIFTAIGESFGFWGTTLVALIYLGLLMVIVNMAERQ
                     RSTYSRVYGYCLASVIFFHAVVNICMTIGLAPVIGIPLPLISYGGSSLLTFTVFLFIF
                     VRLDADRQVVLR"
     gene            complement(1379..>2161)
                     /locus_tag="VLL95_00120"
     CDS             complement(1379..>2161)
                     /locus_tag="VLL95_00120"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HSR37291.1"
                     /translation="NTISNSIGQGEVNSTVLQLTNAIAMIANKGWYYTPHLVDSIEGG
                     DKFGLLTPYRKRIEPIHIPDNMFEAVHAGMEAVMKPGGTGWRMAVEGINICGKTGTVE
                     NYYKGNKQKDHSFFAAFAPRENPKIAIACIVENGGFGATIAAPIVSLMIEKYINDTIS
                     TKRQEWVKRYSGISITPARIVDEIRKRDSIRMAKDAAKARKQLMKEIKDETGIEEDPD
                     SNATDTRRQAPAAPARKDSSRTTFVMPLFDERKKWQALPLIS"
BASE COUNT          513 a          555 c          543 g          550 t
ORIGIN      
        1 tacctcgtat ttcgtactta cctcaacacc acctgtctgt cggcatcgag ccgcacaaag
       61 atgaaaagga ataccgtgaa agtgagcagg gatgaccctc cataactgat cagtggtaag
      121 ggaataccga tcacaggggc caggccaatg gtcatgcaga tattgaccac cgcatggaag
      181 aaaatgaccg aggcaaggca atagccatac accctgctgt aggtgcttcg ctgtcgctcc
      241 gccatattca cgatcaccat cagcagcccc aggtaaataa gcgccacgag tgtggtaccc
      301 caaaagccaa agctttcgcc aatggcggta aagatgaaat cggtatgttg ctccggcaca
      361 aaatcgccct gcgttacggc tcctttcaaa aatcctttcc cgagaaagcc accactacca
      421 atggcgatct tgctttgctt cacgttgtag ttctcttctt tcttgccacc cttgccaatc
      481 ttaccctgct tggctttttc tttcatcagc gcttcggcgg cagcggggtc cttcggcacg
      541 taatctttac caaacatgct catgatgcgt tctacctggt aaggttgcat cactttttcg
      601 aacatgaagg gaacggcaaa acgctgtatg cctacgcaga gaccccagac gccgacaatc
      661 aacaacaaca atcttttttc acggcggatc ttgcggcgca tcacccacac tgtcagaatg
      721 ccgagcacag tgagtatggt ggccagcgta ttgggctcca ccagcacaga agccactacc
      781 agcaccgcag tagatgcgcc aataatgagg taggcgggtg gcagcccttc gcggtacaag
      841 ggaatgaaga aggcaaaata taccagtgcc aggccggttt cattttgcag gatagagaag
      901 gcggctggtg tcagcgccag tgcaatggct atggcatgac tgcgccattt cctgaagtcg
      961 gtttccaatc ggctcaggta tttggccagc gccagcgaca cgaagatctt acaggtttct
     1021 gccggctgca ggttcatgaa gcccaatggt atccagctgt gcgaaccatt gatttcttta
     1081 cctaccacga aagtggccaa tagcagtaca atgcctaacg cataaaacaa gttggaagtg
     1141 gcagtaaaga atttgctgtc ggtaagcaat atgaaaccac ctactaccag gcagattgtg
     1201 aagaagagca actgcttgct gtagttggtt ttgagcccgg taatggattg aatgatgctc
     1261 acctcggggc ggtactccac tgagaaaatg gcaataaggc caatcatcac caatacgagg
     1321 tagatgataa cgggcagcca gtttatgcct ttggatatga tgcgttggtt ctgtgccatc
     1381 aggagatcag cggcagggct tgccattttt tgcgttcatc aaataagggc ataacaaagg
     1441 tggtgcgtga tgaatccttc ctggcgggtg ctgccggggc ttgccggcgg gtatcggtcg
     1501 cattgctgtc cggatcttct tcaatacccg tttcatcctt tatttctttc atcagctgct
     1561 tgcgggcctt ggcagcatcc ttggccatcc tgatgctgtc acgcttcctg atttcatcta
     1621 cgattcgggc cggagtaata ctgatgccgc tgtagcgctt cacccattcc tgccttttgg
     1681 tactgatggt atcgtttatg tatttctcga tcatcaggct cacgatgggc gcagcaatgg
     1741 tagccccgaa tccaccattc tccactatac aggcgatggc aattttcggg ttttcacgtg
     1801 gtgcaaaggc tgcaaagaaa gagtggtctt tttgcttgtt gcctttgtaa tagttttcta
     1861 cggtacctgt tttgccacag atattgatgc cttcaaccgc catgcgccag ccggtaccgc
     1921 ccggtttcat taccgcttcc atgccagcat gcacggcttc gaacatattg tcggggatat
     1981 ggatgggttc aattcttttc cggtagggag tcagcaatcc gaacttatct cccccttcaa
     2041 tactgtccac caggtgtggg gtgtaatacc agcctttgtt ggcgatcatg gcaatagcat
     2101 tggtcagttg aagaacggtg gagttcactt cgccctggcc tatggagttg gaaatggtat
     2161 t
//
LOCUS       DATIQF010000008         2001 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_137110,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000008 DATIQF010000000
VERSION     DATIQF010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137110"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2001
                     /gene="uvrA"
                     /locus_tag="VLL95_00125"
     CDS             <1..>2001
                     /gene="uvrA"
                     /locus_tag="VLL95_00125"
                     /inference="COORDINATES: protein motif:HMM:TIGR00630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HSR37292.1"
                     /translation="GTVTEIYDFMRLLFARASDAYSYNTGKKMVKFSEEEIVENIGSK
                     YAKKKISLLAPIVRGRKGHYRELFEDLRKKGYLKVRVDGEVKDLVPKMQVDRYKIHDI
                     ELVIDRLAVTPDMKVRLSQSVQKTLQQGKGLMQVLDNDTNKVTQYSKSLMCEDTGLSY
                     DEPSPNSFSFNSPYGACPHCKGLGTVYSIDMEAVIPDASLTIAEGGIAPLGEQRDAWI
                     YKQVEALARKHKINLKKPISELPEAQLNIILHGSETADDNALAVDYEDDGLPNHSGGY
                     FDSVFEGVVPMIKRWFNTSSSDSIRDWAEGYMKLDTCPTCNGARLKKESLWFLVAGKN
                     IAELSNLDLDELAVWFNDIEKKLSNKQNAIAKDVLKEIRERLQFMIDVGLTYLTLNRP
                     TKTLSGGESQRIRLATQIGSQLQDITYILDEPSIGLHQRDNHRLIDALKNLRDIGNSV
                     LVVEHDKDIMLASDYLVDIGPKAGRHGGRIVVSGTPQQVIASRSETADYLSGKQSIPV
                     PAERRKGNGKQIELKGATGHTLKNVSIKLPLGKMIVVTGVSGSGKSTLINETLYPLLS
                     NHSFKASRMSVMPYKTIKGLEHIDKVIEIDQSPIGRTPRSNPATYCGFFTEIRQLFAS
                     VPEAKIRGYQPGRFSFNVKGGSCDVCEGGGMRVIEMNFLPDV"
BASE COUNT          562 a          511 c          575 g          353 t
ORIGIN      
        1 gggcacggtg acagagatct acgacttcat gcgcctgctg tttgcccggg ccagcgatgc
       61 ctacagctac aacaccggca agaagatggt gaagttcagc gaagaggaaa tagtggagaa
      121 catcggcagc aaatacgcaa aaaagaaaat atcgctgctg gcgcccatag tgcggggccg
      181 caaggggcac taccgcgaat tgtttgaaga cctgagaaag aagggctacc tgaaagtgcg
      241 ggtggatggc gaggtaaaag acctggtgcc caagatgcag gtggaccgct acaagatcca
      301 cgacattgaa ctggtgatag accggctggc cgtgacgccc gacatgaaag tgcggctgag
      361 ccagagcgtg cagaaaacat tgcagcaggg caaaggcctg atgcaggtgc tggacaacga
      421 taccaacaaa gtgacacaat acagcaagag cctgatgtgc gaagacacgg gcctgagcta
      481 cgatgagcca tcgcccaact cattttcgtt caacagtcct tacggcgcct gccctcattg
      541 caagggactg ggcaccgtgt acagcatcga catggaagcg gtgatacctg atgcttcgct
      601 taccattgcc gaagggggca tagcgcccct gggcgagcag cgtgatgcat ggatatacaa
      661 acaggtggaa gcgctggcca ggaagcataa gatcaactta aagaaaccga tcagcgaatt
      721 acctgaagca cagctgaaca ttatactgca cggcagtgaa acagccgatg acaatgcgct
      781 ggccgtggat tatgaagacg acggcctgcc caaccacagc ggcggctatt tcgacagcgt
      841 gtttgaaggt gtggtgccca tgatcaagcg ctggttcaat accagcagca gcgacagcat
      901 ccgcgactgg gcagagggct atatgaagtt ggacacctgc cctacctgca acggggcaag
      961 gctgaagaag gaaagtctct ggtttttggt ggcaggaaag aatatagccg aactgagtaa
     1021 cctcgacctc gatgaactgg ccgtatggtt caacgatatt gagaagaaac tgagcaacaa
     1081 gcaaaacgcc attgccaaag atgtgctgaa ggaaataaga gaacgcctgc agttcatgat
     1141 cgacgtgggc cttacctacc tgacgctgaa ccgccccacc aaaaccctga gcggcggcga
     1201 aagccagcgc atacgcctgg ccacgcaaat aggcagccag ctacaggaca tcacctacat
     1261 tttggatgaa ccttctattg gcctgcatca acgcgacaac caccgactga tagatgcctt
     1321 gaaaaacctg cgtgatattg gcaacagcgt gttggtggtg gagcacgaca aagacatcat
     1381 gctggccagc gactacctgg tggatattgg tcccaaggcc ggcaggcatg gcggccgcat
     1441 tgtggtgagc ggcacacccc agcaggtgat agccagccgc agtgaaacgg ccgattacct
     1501 gagtggcaaa caaagcatac cggttccagc ggagcgccgc aagggcaacg gcaaacaaat
     1561 agaattgaaa ggggctaccg gccacacttt gaaaaacgtg agcatcaaat tgccgctggg
     1621 caaaatgatc gtagtgaccg gcgtaagcgg tagcggcaaa agcacgctaa tcaacgaaac
     1681 cctgtacccg ctgctgagca atcattcctt caaggccagt cgcatgagcg tgatgcccta
     1741 caaaaccata aaagggctgg agcatattga caaggtgatt gagattgacc agagccccat
     1801 tgggcgtacg ccacgaagca acccggctac ctattgcggc ttctttaccg aaatacgtca
     1861 actgtttgcc agtgtgcccg aagcaaagat ccgtggctac cagccgggcc gtttttcgtt
     1921 caacgtaaaa ggcggcagct gcgatgtatg cgaaggcggt ggcatgcggg tgatagaaat
     1981 gaactttctg cccgacgtgt a
//
LOCUS       DATIQF010000009         2113 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_45895, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000009 DATIQF010000000
VERSION     DATIQF010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45895"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..544)
                     /locus_tag="VLL95_00130"
     CDS             complement(<1..544)
                     /locus_tag="VLL95_00130"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HSR37293.1"
                     /translation="MDLLRFITAGSVDDGKSTLIGRLLYDSKSILVDQLEAIERQTKN
                     KANGEIDLALLTDGLRAEREQGITIDVAYKYFSTPKRKFIIADAPGHIQYTRNMVTGA
                     SNSELIIVLIDARQGVVEQTRRHSIIASLLRIPHVVVAINKMDLVNYSEDVFNNIVID
                     YSQIAEKLGLPEVSYIPISAL"
     gene            complement(583..1491)
                     /gene="cysD"
                     /locus_tag="VLL95_00135"
     CDS             complement(583..1491)
                     /gene="cysD"
                     /locus_tag="VLL95_00135"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: protein motif:HMM:NF003587.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA];
                     GO_process: GO:0019419 - sulfate reduction [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HSR37294.1"
                     /translation="MSQYQTDYLDYLESEAIHIMREVAGQFERPALLFSGGKDSITLV
                     HLALKAFRPGKFPFPLVHIDTGHNFPEALQFRDELAHSIGERLIVRKVEDTIKRQQLT
                     EAKGKFASRNALQTYTLLETIEEFEFDCCIGGARRDEEKARAKERVFSVRNEFGEWDP
                     KSQRPELWSTYNGRIHKGENVRAFPISNWTELDVWNYIRREKIDLPSIYFSHEREVLV
                     HEDQLIAVSEFIQIEPGDVIEKRKVRYRTVGDMTCTAAVESQAETLDEVVNEIIATRI
                     SERGETRIDDRVTEAAMEDRKKNGYF"
     gene            complement(1584..>2113)
                     /locus_tag="VLL95_00140"
     CDS             complement(1584..>2113)
                     /locus_tag="VLL95_00140"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: protein motif:HMM:NF002537.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004604 - phosphoadenylyl-sulfate
                     reductase (thioredoxin) activity [Evidence IEA];
                     GO_process: GO:0019379 - sulfate assimilation,
                     phosphoadenylyl sulfate reduction by
                     phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoadenylyl-sulfate reductase"
                     /protein_id="HSR37295.1"
                     /translation="TLDTGRLFPETYSTWNATLEKYGQPITAYYPDAAALQAFVAAKG
                     PNSFYESVDNRKTCCGIRKVEPLKRALSGRKVWITGIRAEHSANRSDMTRVEWDASHG
                     VFKFHPLLHWTQEQVNTFLKDNQVPTNPLHAKGFVSIGCAPCTRAIKPGEDFRAGRWW
                     WEEADKKECGLHVHQ"
BASE COUNT          430 a          521 c          576 g          586 t
ORIGIN      
        1 tgagggcgct gatggggatg tagctgactt cgggcaagcc caacttctca gcaatttgcg
       61 agtagtcgat cacaatgttg ttgaacacat cttccgaata attcacgagg tccattttgt
      121 tgatggccac tactacatgc ggtatgcgca gcagcgaagc aatgatgctg tgtcgacggg
      181 tttgctccac cacgccctgg cgggcatcaa tgagcacaat gatgagttca gaattgctgg
      241 cgcctgtcac catgttgcgg gtgtattgta tatgccccgg cgcatcggca atgatgaact
      301 ttcgcttcgg tgtagagaaa tatttatagg caacgtcgat ggtaatgccc tgttcccttt
      361 cggcccgcaa accatcggtc agcaatgcca aatcaatttc accgttggct ttgtttttgg
      421 tttggcgttc tatggcttcc agttggtcca ccaggatgct tttgctgtcg tagagcaatc
      481 tgcctattaa tgtgctttta ccatcatcca cactgccagc tgtaataaat cgtaataagt
      541 ccattgtctg tattgtgtta agccccttta ggggttgggg gtttagaaat atccattctt
      601 cttccggtct tccatcgccg cttcggtcac ccggtcgtcg atgcgggttt cacctctttc
      661 gctgatgcgg gtggcaatga tctcgttcac cacttcatcc agcgtttcgg cctgactttc
      721 cacagcggcg gtgcaggtca tgtcgcccac ggtgcggtag cgcacttttc ttttttcgat
      781 cacatcaccc ggttctatct ggatgaactc agacacagcg atcagttggt cttcgtgcac
      841 cagcacttcc cgttcatgcg agaaatagat ggaagggagg tcaatttttt cgcggcggat
      901 atagttccaa acatccagtt cggtccagtt gctgatggga aaggcccgta cattctcgcc
      961 cttgtggata cggccgttgt aggtgctcca cagttcgggg cgttgtgatt tcggatccca
     1021 ttcgccaaac tcgttgcgaa cgctgaacac tctttccttg gcccttgctt tttcctcgtc
     1081 gcggcgggcg ccgccaatgc agcagtcgaa ttcaaactct tcaatggttt cgagcagggt
     1141 gtatgtctgc agggcattgc gactggcaaa ttttcctttc gcttcggtga gttgttgtcg
     1201 cttgatggtg tcttccactt ttcgtacgat cagtcgttcg ccgatgctgt gggccagttc
     1261 atccctgaac tgcagggctt cgggaaagtt gtgaccggtg tcgatgtgca ccaacgggaa
     1321 gggaaacttg ccggggcgga atgctttcaa cgccaggtgt accagcgtaa tagaatcctt
     1381 gccaccactg aacagcaaag cgggcctctc aaattgcccg gccacttcac gcatgatgtg
     1441 aatggcttcg gattcgaggt aatcgaggta atcggtttgg tattggctca tgcgaatgat
     1501 ttaaagtaca gttgataagt gaacattttg tgtgcgcaaa agtgatgcct tggtaaatga
     1561 tgtttttatg attgaaaaca ggattactgg tgtacgtgca ggccgcattc ttttttgtcg
     1621 gcctcttccc accaccagcg gcccgccctg aagtcttcgc cgggtttaat agcccgggtg
     1681 caaggcgcac agccaatgct cacaaagcct ttggcgtgca gggggttggt gggcacctgg
     1741 ttgtctttca gaaaggtgtt tacctgttct tgtgtccagt gtagcagagg atgaaacttg
     1801 aaaacgccat gcgaagcatc ccattcaacg cgggtcatgt cgctgcggtt ggcagagtgt
     1861 tcggcgcgaa tgccggtgat ccacactttg cggccgctga gggcacgctt cagcggttcc
     1921 actttgcgga tgccgcaaca ggttttgcgg ttgtctacgg attcataaaa tgaattgggc
     1981 cctttagcag ccacaaaggc ttgcagggca gcagcgtcgg gataataggc cgtaatgggt
     2041 tggccgtatt tctccagcgt ggcattccag gtagaataag tttctgggaa tagccggccg
     2101 gtatccagtg taa
//
LOCUS       DATIQF010000010         2917 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_30670, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000010 DATIQF010000000
VERSION     DATIQF010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2917
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30670"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..617
                     /locus_tag="VLL95_00145"
     CDS             <1..617
                     /locus_tag="VLL95_00145"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="asparagine synthase C-terminal domain-containing
                     protein"
                     /protein_id="HSR37296.1"
                     /translation="TVERMYGYAEWLPLATNKGLFALDKRQQVDAYQPADYYYQLLQQ
                     IPQEKNLLNQKLFWELKGFLPDHNLNYTDKMSMAVGVEARVPFLDTELVAFSTQLHPD
                     LKMKGTVTKYLLKKLMEQYLPHDIIYRPKTGFGGPVREWVKSDLKEKIADELSAENLR
                     RRGIFDAAAVQQLIADNQSGKIDAAYSIWGLLAIESWFRQFVDQ"
     gene            663..2816
                     /locus_tag="VLL95_00150"
     CDS             663..2816
                     /locus_tag="VLL95_00150"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bi-domain-containing oxidoreductase"
                     /protein_id="HSR37297.1"
                     /translation="MKQIIQSFKTGETLLEDIPAPQVRPGTLLIETTHSLVSLGTEKM
                     LVEFGKANLIEKARQQPDKVKQVLDKIKSDGLMPTLEAVFNKLGQPLPLGYCNVGRVL
                     AVGAGVSGYAVGDRVASNGPHAEVVCVPKNLVAKIPDGVSDEEATFTVIGSIGLQGIR
                     LLQPTLGETVVVVGLGLIGMITAELLVANGCRVIGIDLDDRKLALAKDKGILTLNPQH
                     DDVVNAVQQLTNGIGCNGVIITASAKTDSIISEAARMSRKRGRIILVGVIGLNISRAE
                     FYEKELSFQVSCSYGPGRYDEVYEQQGQDYPLPFVRWTEQRNFETILQAISSGKLNVK
                     ALISEKVALHDYLQVYGALGKTGSIASILVYPGVEKTAGNKPSTVIQVKAAHFQPSDA
                     VVGIIGAGNFKQMTLLPALKGSGAALKYIASASGVSGTAMAKKFGFTHSTTDYQSILA
                     DEEVKLVMITTRHNQHARQVVETLKAGKHVFVEKPLALQPEELKEIIATYNSLPSAQL
                     LAVGFNRRFSPHSRQMKKLLGDTPGPLNIIATMNAGFIPPNVWVHDMKTGGGRIIGEA
                     CHFLDLMVYLGGSPIESVCMNAMGPNPAVNTDNASILVRMANGSQGVLNYFANGHKAY
                     SKERVEVYSQNRTLVMDNFRITEGFGFSGFKRLKTTQDKGHKTQFAQWISTVKEGGEP
                     LIPAADIFNVTAASFAAIQSLQSGTWVDVASILEG"
BASE COUNT          790 a          652 c          793 g          682 t
ORIGIN      
        1 ctaccgtgga gcgcatgtat ggctatgccg aatggcttcc ccttgctacc aacaaaggac
       61 tgtttgcttt ggataaaagg cagcaggtag atgcgtatca gccggctgat tactattacc
      121 aattgctgca acagatcccg caggagaaga atttactcaa tcaaaaactg ttctgggaat
      181 tgaaagggtt tcttcccgat cataacctca actataccga taaaatgagc atggcagttg
      241 gtgtggaagc cagggtacct ttcctggata ctgaattggt tgccttctcg acccaattgc
      301 atcccgatct gaaaatgaag ggaacggtta ccaaatacct gctcaagaaa ttgatggagc
      361 agtacctgcc tcatgacatt atttatcgac ccaaaaccgg gttcggcggt cctgtcaggg
      421 aatgggtaaa gtccgatctg aaagaaaaaa tcgcggatga attatcagcc gaaaatttgc
      481 ggcgccgggg cattttcgat gcggcagccg ttcagcaatt gattgccgat aaccagtccg
      541 ggaaaataga tgccgcatac agcatatggg gcttgctcgc cattgaatca tggttccggc
      601 agtttgtaga tcagtaaaca gcaacggctg aaaatggcgg ttgttgaaac cataccagaa
      661 gtatgaaaca aatcattcaa tcctttaaaa ccggcgaaac cttgctggaa gacattccgg
      721 caccgcaggt acgacccgga actttgctca tagaaacgac acacagcctg gtgagtttgg
      781 gtaccgagaa gatgctggtg gagtttggca aagccaacct gattgagaaa gcccggcagc
      841 agcccgacaa ggtgaagcag gtgctggaca agatcaagag tgatggcctg atgccaacgc
      901 tggaggcagt gttcaataaa ctgggccagc ctttgccatt ggggtattgc aacgtgggcc
      961 gggtattggc ggtgggtgca ggcgtttcgg gatatgccgt gggcgacagg gtggccagta
     1021 atggaccgca tgccgaagtg gtttgcgtgc ccaaaaacct ggttgccaaa attcctgatg
     1081 gagtatctga tgaagaagcg actttcacgg tcatcggttc aataggcctg cagggcattc
     1141 ggttgttgca acccaccctg ggcgaaactg ttgtggtagt gggactcggg ttgatcggca
     1201 tgatcacggc cgaactgctg gtggccaatg gctgccgggt gattggcatc gacctggatg
     1261 atcgcaaact ggcgctggca aaagacaaag gcatcctcac actgaatccg cagcatgatg
     1321 atgtggtgaa tgccgtgcaa caattgacca atggtatagg atgcaatggt gtgatcataa
     1381 ctgccagtgc caaaaccgac agcatcattt cggaagcggc acgcatgagt cgcaaacgtg
     1441 gtcgcatcat attggtaggc gtcatcggct tgaatatttc acgggccgag ttttatgaaa
     1501 aggaactcag cttccaggtt tcgtgcagtt atggtcccgg ccgctatgat gaagtgtatg
     1561 agcaacaggg gcaggattat ccattgccat ttgttcgctg gacagaacaa cgaaattttg
     1621 aaaccatcct tcaggccatt agcagcggta agctgaatgt aaaggcattg atatctgaaa
     1681 aagtggcttt gcatgattac ctgcaggtgt atggcgccct gggcaaaacc ggttccattg
     1741 cttccattct ggtttatccg ggtgtggaga agactgctgg caataaacca agtacagtca
     1801 tccaggtaaa ggcagcgcac tttcaaccca gcgatgcggt agtagggatc attggggcgg
     1861 gcaatttcaa gcaaatgaca ttgttgccgg cactgaaagg ttccggtgcg gcactgaaat
     1921 acatcgccag tgccagtggt gtatcgggca cagcgatggc taaaaagttt ggattcacac
     1981 acagcactac cgattatcaa tcgatactgg ctgatgagga agtgaaactc gtgatgatca
     2041 caacaaggca caaccaacat gcccggcagg tagtggaaac gttgaaagcc ggcaagcatg
     2101 tgtttgtaga aaagcccctg gcactgcagc cagaggagtt gaaagaaatc attgcaacgt
     2161 ataactcttt gccatctgcc cagctgttgg ctgtaggctt caatcgtcgt ttttctccgc
     2221 acagccggca aatgaaaaag ttgctgggag atacgccggg accattgaac ataattgcta
     2281 ccatgaatgc cggttttatt ccgcctaatg tgtgggtgca tgacatgaaa actggtggtg
     2341 gccgcattat tggcgaagca tgtcacttcc tcgacctgat ggtatacctg ggtggaagcc
     2401 ccatcgaaag tgtgtgtatg aatgcgatgg gacccaatcc tgctgtcaat acggataatg
     2461 cttccatact ggtgcgcatg gccaatggat cgcagggcgt gttgaattat ttcgccaatg
     2521 gacacaaagc ctactcgaaa gaaagagtgg aagtatactc gcaaaaccgt accctggtaa
     2581 tggacaattt caggataacg gaaggcttcg gattcagtgg tttcaagcgt ctcaagacaa
     2641 cgcaggataa agggcacaaa acccaattcg cacaatggat aagcacggtg aaggaaggag
     2701 gcgaaccgct cattcctgct gccgatattt tcaatgttac cgctgcttct tttgcggcca
     2761 tccaaagtct gcaaagcggc acctgggtgg atgtagcatc catactggaa ggatgatgtt
     2821 gttgaccaat tttttagaag aatatttttg acagccaggt gctcgaaagc ctgatcacat
     2881 cgaaaacccg catgaaattg ttgctgaaat tttttag
//
LOCUS       DATIQF010000011         2178 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_15456, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000011 DATIQF010000000
VERSION     DATIQF010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2178
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15456"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..555)
                     /locus_tag="VLL95_00155"
     CDS             complement(<1..555)
                     /locus_tag="VLL95_00155"
                     /inference="COORDINATES: protein motif:HMM:NF014809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II transmembrane
                     domain-containing protein"
                     /protein_id="HSR37298.1"
                     /translation="MNIWLLLLVVAMVFLVIFQIAKASEYVSVLKGEKKAREQSNRIN
                     AFLMLAFMIVGLIAAYWCNEKLKGQTLFAQGSASIEGEKIDEMFMLTLYITGIVFVIT
                     QILLFWFSFKYQEKEGRKAFYFPHNNKLEMIWTIIPAITLTVLVVFGLRHWFKITGDA
                     PKESMLVEITGQQFGWTYRYPGTDG"
     gene            complement(657..1877)
                     /locus_tag="VLL95_00160"
     CDS             complement(657..1877)
                     /locus_tag="VLL95_00160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37299.1"
                     /translation="MASYSNQFVQPAGMKKWGMGLTAVGALALVGGLAFLAFSKDEHD
                     VTRFWAVLLQNSVYWLLVVNAAMFFICATTLAWAGWVQSFRRVAEAISTLVIPFGIIA
                     FIVLMGLVYGHQHHIYHWLTPEGDKILEGKSGFLNPTFFTIWSVITIGGWILLGRNMR
                     RLSRQVDETPLSTEEAKSWIHKNTVHASFYIVLFALTVTSSIPWLWLMSIDAHWYSTM
                     YSWYTFASSFVAGMSLIALFVIYVKNQGLLPYTTEEHLHDLAKFMFAFSVFWTYLWFS
                     QYMLIWYANIPEETEYFKVRVWGEYRGLFFLNLVLNFVSPLLILMKAGAKRNYTIVSF
                     MAILIIFGHWIDFYLMVMPKPLGSHASISWFELGIALGFVGMIIWLTGKALEKAPLVP
                     MHHPFLKESVIHHT"
     gene            complement(1927..>2178)
                     /locus_tag="VLL95_00165"
     CDS             complement(1927..>2178)
                     /locus_tag="VLL95_00165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HSR37300.1"
                     /translation="GPFPAKPATLVGDAKYEAMTDGTMYYSITYGRNLMGSYASQLTP
                     KQRWDIIYYIKAKQGKNAGPAAAVAATAPVADSTAAKTK"
BASE COUNT          611 a          522 c          523 g          522 t
ORIGIN      
        1 accatcagtt ccgggatagc gatatgtcca gccaaattgc tgaccggtaa tttctaccag
       61 cattgattct ttgggagcat cgccggtgat cttgaaccag tgacgcaaac caaaaaccac
      121 cagcacggta agggtgatgg caggaatgat ggtccagatc atttccagtt tgttgttgtg
      181 cggaaagtag aaagctttac ggccttcctt ttcctggtat ttaaagctga accagaagag
      241 aagtatttgc gtaatcacaa acacaattcc cgtaatgtaa agggtcagca taaacatctc
      301 gtcgatcttc tccccttcaa tggaagcgga tccctgggcg aacaaagtct gtcccttcag
      361 tttttcattg caccaatacg cggcaatcaa acccacaatc atgaaggcaa gcatcaggaa
      421 agcattgatc cggttgcttt gttcccgggc tttcttttca cctttcagta cgcttacgta
      481 ttcgctggct ttggctattt ggaaaataac caggaaaacc atcgctacta ctaacaacaa
      541 caaccagatg ttcatacgtt cagttgctta aaaaatggag acaaaaatat tttggagaaa
      601 gtgtgcggtt aattcttgtt gaagaattgt ggtgtgctaa aggtcagaac aaattatcag
      661 gtgtggtgaa ttacactctc tttcaggaaa ggatgatgca tgggcaccag cggggctttt
      721 tcaagtgcct tgccggtcag ccaaatgatc atgcctacaa aacccaacgc tattcccaat
      781 tcgaaccaac tgatagaagc atggcttccc aaaggtttgg gcattaccat gaggtaaaag
      841 tcgatccagt ggccaaaaat aatcaggatg gccatgaagg acacaatggt gtagttgcgc
      901 ttggcacccg ccttcatcag gatcaacagc gggctaacaa agttcagcac gaggttgagg
      961 aagaaaagac ccctgtattc accccaaacg cgaaccttga agtattcagt ttcttcagga
     1021 atgttggcat accagatcag catgtactgg ctgaaccaca ggtaagtcca gaacactgag
     1081 aaagcgaaca tgaacttggc caggtcatgc aggtgttctt cggtggtata aggcagcaag
     1141 ccctggtttt ttacatagat cacaaacagc gcaatcaatg acatacccgc aacaaaagac
     1201 gatgcgaaag tgtaccagct gtacatggtg ctgtaccagt gcgcatcgat gctcatgagc
     1261 cacaaccatg gaatggaaga ggtaacagtc agcgcaaaca atacgatata gaacgatgca
     1321 tgcacagtgt ttttatggat ccagcttttg gcttcttcgg ttgacaacgg cgtttcatcc
     1381 acctggcggc tgaggcggcg catattgcga ccgagcagga tccagccacc gatggtgata
     1441 acagaccaaa tggtaaagaa ggttgggttg aggaacccgc tttttccttc caggatcttg
     1501 tctccttctg gtgtcagcca atggtaaata tgatgctgat ggccataaac caatcccatc
     1561 agtacaatga aggcgatgat gccaaaggga atcaccaggg tggaaatggc ttcggcaaca
     1621 cgacggaaac tctgcaccca gccggcccat gccagggtag tggcgcaaat aaagaacatg
     1681 gcagcattca ccaccaacag ccaatacaca ctgttctgca agagtactgc ccagaaacgg
     1741 gtcacatcat gctcatcctt gctgaaggcg aggaaagcca ggccgcccac caaagcaagt
     1801 gcgcctactg ctgtaagacc catgccccac ttcttcatgc cggcgggttg aacaaattgg
     1861 ttactatatg aagccattct caaaaaatta tcaggttaaa gctcttgaat ttctgtttcg
     1921 atcgatttac ttggtcttgg cagccgttga gtcagcaaca ggagccgttg cagccactgc
     1981 tgcagcgggg ccagcgttct ttccctgctt cgctttgata tagtaaatga tatcccaacg
     2041 ttgcttcggc gtcagctgag aagcgtagct gcccatcagg ttgcggccgt aagtaatgct
     2101 gtaatacatg gtgccgtcag tcattgcttc atacttggca tcgcctacca atgtagcggg
     2161 ctttgcaggg aaagggcc
//
LOCUS       DATIQF010000012         3178 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_106718,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000012 DATIQF010000000
VERSION     DATIQF010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3178
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106718"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..869)
                     /locus_tag="VLL95_00170"
     CDS             complement(<1..869)
                     /locus_tag="VLL95_00170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37301.1"
                     /translation="MIVTTAVLAISVFATLLAFGLFLRVHQEHTPANYLLMGWLGIIC
                     IFVIMLFLIRTGLVLNVPFLYRLPSPLYYLTFPAAWLYVRMVLKDETRLRKTDLLHAL
                     PALLHLVEMLPYYFSSYDQKLAVVTADLANPLGGFRLAEGWMPNYTHNILRSIQAIAY
                     AIPMAFLIRRYYRDHDMHVAAFAKPLQWLKTISAGQFAFGLSALVLLGYSQLGTADFR
                     GFLLYVLLASYYTLWATYLVLHPSILRGMPRLSIPPVALPGSEAPLVEEHIQTPEAQP
                     VPVAGITPQDEPQP"
     gene            complement(1655..>3178)
                     /locus_tag="VLL95_00175"
     CDS             complement(1655..>3178)
                     /locus_tag="VLL95_00175"
                     /inference="COORDINATES: protein motif:HMM:NF016859.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37302.1"
                     /translation="GIIAAQSIGEPGTQLTLRTFHVGGVAGSASVENTLNSKFDGLVQ
                     FDGIRTVKGENAQGDDATYVIGRTGEIRIMDEKGERLLSTNNVPYGSILAVKNGQKIK
                     KGEVICSWDPFNNVIISEINGKVVFDSILEGVTFREEADDQTGHREKVVIETKDRTKI
                     PAIKIEGKDVKMYNLPVGAHLNVEEGQEVRNGQVLAKIPRILSKLRDITGGLPRVTEL
                     FEARNPSNPAIVSEIDGVVTFGTIKRGNREIIVEAKDGTVKKYLVPLTRQILAQDGDF
                     IKAGAPLSDGSISPADILSIKGPFAVQEYVVNEIQEVYRLQGVKINDKHIEVIVRQMM
                     KKVEIMDAGDTRFLEEDLEDRFDFIDENDRIYDKKVVVEPGDSTKFRPGQIISLRELR
                     EENSVLRRADQKLMEVRDANPATAKPVLLGITKASLGVQSWISAASFQETTKVLSTAA
                     IHGKRDDMLGLKENVITGHPIPAGTGLREFDNLIVGSKEEYEVLATTRQVMSFDEEE"
BASE COUNT          768 a          794 c          802 g          814 t
ORIGIN      
        1 ggttgaggtt catcttgcgg ggttatgccg gcgacaggaa cgggctgagc ctcgggtgtt
       61 tggatatgct cctcaaccaa aggagcctcg ctgccgggca aagccacggg gggaatggag
      121 agacgtggca tccccctcaa aatactggga tgcaaaacca ggtaggtggc ccacagcgta
      181 taataggatg ccagcagcac ataaagcagg aaacccctga aatccgccgt acccagttgg
      241 ctatacccca atagcaccaa agcactcaaa ccaaaggcaa actgaccggc agaaattgtt
      301 ttaagccatt ggagtggttt ggcaaacgcc gcgacatgca tatcgtggtc cctgtaatat
      361 cggcggatca aaaacgccat gggtattgca taggcaatgg cctggatact tcgaaggatg
      421 ttgtgcgtat aattgggcat ccatccttcg gcaagccgga atcctcccaa cgggttggcg
      481 agatctgccg tcacaacagc cagtttttga tcgtaactgg aaaaataata agggagcatt
      541 tccaccaggt gcagcagcgc aggcagggca tgtaaaagat ctgttttccg caaacgcgtt
      601 tcatctttca gcaccattcg tacgtacaac caggctgccg gaaaagtgag gtagtacagg
      661 gggctgggca gcctgtaaag aaagggcaca ttcagcacaa gccccgttct gatcagaaac
      721 aacatgatca cgaaaatgca gatgatgccc agccaaccca tcagcaggta attggccggc
      781 gtatgctcct gatgcactct caaaaacagt ccgaaagcta aaagggtagc aaaaactgaa
      841 atggccagta cagcagtggt tacgatcata atgcgagaat gcggagattg cttacctaat
      901 tacaactttg gcctgataga gtttggggcc ctgccggaca ttttgaccat tgaaccaatg
      961 ctttgcacga agcgggtaat gcaaataatt gtgatgcaga aggccattgc cgcacctcat
     1021 atgatttttg ccttaacctg tgtttataag tcattttctg agaaaggaag gggctaaaag
     1081 tagtggttct gaccgaatgt atccaccccc tctcgccggg atctgaagat gacccgcggg
     1141 agaagatttt gacaatgttt aaacattaaa aataatctta ataaatagtg ctttaaatgc
     1201 tggtaatttt cgttaaaact gtttaacttt tggtgcccaa atcaatctgg aggttgttca
     1261 atggaattca tgggccctcc atttgttcat tttaaaaaca caatgcgtat ggaaaaacat
     1321 gtacactact ccaatcagga aaacatggaa gccagtgatt ggcgtccctg ggtaatcctg
     1381 gggttgctgg ccgtggtgct taccattgcc ttgattactt attaagttaa acccagtttc
     1441 ctgcttgtct tccattcagc caggcaggcg caattgttgg taaggccggt cttttccttt
     1501 gctataaatg tgtggtgcaa gaagggattg gcttctttcc agccttgcag aattgcattg
     1561 gcataaaaaa ccctaaacaa cccattgcag gaaacaaaaa agcaggaccg tggtcctgct
     1621 ttttattttt caatgagctt ttgctgctca tttattattc ttcttcgtcg aagctcatca
     1681 cctgacgggt ggtggccagt acttcgtatt cttctttgct gcccacaatc aggttgtcga
     1741 actcacgcaa accagtacct gccgggatgg ggtgaccagt gatcacgttt tccttgaggc
     1801 ccagcatgtc gtcgcgtttg ccgtggatgg ccgcggtgct gagtaccttg gtggtttcct
     1861 ggaatgaagc cgcagagatc cagctttgta cacccagaga cgccttggta atacccagca
     1921 aaaccggttt ggcggtggcc ggattggcat cacgcacttc catcagtttc tggtcggcgc
     1981 ggcgcagtac gctgttttct tcgcgcaatt cccgcaggct gatgatctgg ccggggcgga
     2041 atttggtgct gtcaccaggc tctactacca ctttcttgtc gtagatgcgg tcgttctcat
     2101 cgatgaaatc gaaacggtct tccaggtctt cttcgaggaa gcgggtatcg ccggcgtcca
     2161 taatttccac cttcttcatc atctggcgaa cgatcacttc aatgtgcttg tcgttgatct
     2221 ttacaccctg caagcggtat acttcctgga tttcattcac cacgtattcc tgcacagcaa
     2281 agggaccttt gatagacagg atatcagcag gtgaaataga accgtcggaa agcggagccc
     2341 cggctttgat gaagtcgccg tcctgtgcca ggatctggcg ggtcagcgga acgaggtatt
     2401 tcttaacggt accgtccttg gcttctacta tgatctcgcg gttaccacgc ttgatggtac
     2461 caaatgtaac caccccatca atttcgctta caatggcagg gttgctcggg ttacgggctt
     2521 caaacaattc ggttacgcga ggcagaccac cggtgatgtc gcgcagcttg ctcaggatac
     2581 gtgggatctt tgccagtacc tggccgttcc tcacttcctg tccttcttcc acgttcaggt
     2641 gggcgcctac cggcaggttg tacatcttca catccttgcc ttcgatcttg atggcaggga
     2701 tcttggtacg gtccttggtt tcgatcacca ctttttcgcg gtggccggtc tggtcatcgg
     2761 cttcttcacg gaaggtgaca ccttccagga tgctgtcgaa aaccacctta ccattgatct
     2821 cagagatgat aacgttgttg aacggatccc agctgcagat cacttcgccc ttcttgatct
     2881 tctgaccgtt tttcacagcc aggatagaac cataaggaac gttgttggtg ctcagcaggc
     2941 gctccccttt ttcgtccatg atccggattt caccggtacg gccaattaca taggtagcgt
     3001 catcgccttg tgcattttca cctttcacgg tacggatgcc atcgaactgc accaaaccgt
     3061 caaacttgga gttgagggta ttttcaaccg aagctgaacc agccacacca cccacgtgga
     3121 aggtacggag ggtcaactgg gtaccgggtt cgccgatgga ctgggcggca ataatgcc
//
LOCUS       DATIQF010000013         2367 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_137142,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000013 DATIQF010000000
VERSION     DATIQF010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2367
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137142"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1080
                     /locus_tag="VLL95_00180"
     CDS             <1..1080
                     /locus_tag="VLL95_00180"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF012432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006108 - malate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HSR37303.1"
                     /translation="EVVAYRGHVMNGGSLTDKEKFLHPNDDVNKSQSSNDTFPTAMHI
                     AAYKILLEVTIPGIEKLRNTLAEKSKAFMQVVKIGRTHFMDATPLTLGQEFSGYVSQL
                     DHGLKAIRNTLAHLSELALGGTAVGTGINTPKGYSENVAKHIAALTGLPFVTAENKFE
                     ALAAHDAIVEAHGALKTVAVSLMKIANDIRMLSSGPRSGIGEIFIPDNEPGSSIMPGK
                     VNPTQCEALTMIAAQVLGNDVAINIGGATGHFELNVFKPVMIYNFLHSARLIGDGCVS
                     FNDKCAVGIEPIEANIKKHVDNSLMLVTSLNTKIGYYKAAEIAQKAHKEGTTLKEMAV
                     KLGYVTPEQFDEWVVPGNMVGDLPS"
     gene            1226..>2367
                     /locus_tag="VLL95_00185"
     CDS             1226..>2367
                     /locus_tag="VLL95_00185"
                     /inference="COORDINATES: protein motif:HMM:NF024827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiheme c-type cytochrome"
                     /protein_id="HSR37304.1"
                     /translation="MRTRLTILAGLLATAIIITIECCKTADPTPAPSSNNFTGSVSCQ
                     GCHQQEHTDWQQSHHYMAMQPATDSFVLGDFNNRTYTADGVTSRFFKKDGRFFINTEG
                     EDGSYHDYEVKYVFGFTPLQQYLVEFPGGRMQATRVSWDCVSKKWFHQYAGDKIPAGD
                     WLHWTGNGQNWNTMCAGCHSTNVKKGYNPETDTYHTTYNDINVSCESCHGPGQQHIDY
                     INGNEYKKGKRVAGSLLQLYAGSGQMPEVNTCGYCHARRVDMTEKVPVGAEVMQDYIP
                     ELPTREFFYADGQMNDEDYNYTSFLQSRMFHKGVQCSSCHNPHSGKLKLNGPLVCGQC
                     HQAEKYEAPAHTLHAPGTNNVNCITCHMPSKVYMGNDLRHDHSFRIP"
BASE COUNT          662 a          629 c          573 g          503 t
ORIGIN      
        1 gaagtagtgg cttaccgtgg gcatgtcatg aacggaggat ctctcactga taaagaaaag
       61 ttcctgcatc ctaatgatga tgtgaacaaa tcacaatctt ccaacgacac cttccctact
      121 gccatgcaca tagcggcgta caagattttg ctggaagtga ccatccccgg tattgagaag
      181 ctgcgcaaca cgctggccga aaaaagcaag gctttcatgc aggtggtaaa aattggccgc
      241 acccacttca tggatgccac gccccttacc cttgggcagg aattcagtgg ttatgtttct
      301 caactcgatc acggattgaa ggccatccga aacacactgg cgcacctgag cgaactggca
      361 ctgggtggca cagcagtggg caccggcatc aatacgccca aaggttacag cgaaaatgta
      421 gcgaagcaca tcgccgcgtt gacaggcctt ccttttgtaa cggctgaaaa caaatttgaa
      481 gcgctggctg cccatgatgc cattgtggaa gcacatggtg ctttgaaaac agtagccgta
      541 agcctgatga agattgccaa cgacatccgc atgctttcat cgggaccacg cagtggcatc
      601 ggtgaaatct tcatccccga taatgagccc ggttcatcca ttatgcctgg caaggtgaat
      661 cctacccagt gcgaagcgct taccatgatt gctgcacagg tattgggcaa cgatgtagcc
      721 atcaacattg gcggcgccac cgggcatttc gagctcaacg tattcaagcc ggtgatgatc
      781 tacaatttcc tgcacagtgc ccggctcatt ggcgacggct gtgtgagctt caatgacaaa
      841 tgcgccgttg gcattgaacc catcgaagcc aacatcaaaa agcatgtgga caacagcctg
      901 atgctcgtta cttcgctcaa cacaaaaatt ggatactaca aagcggctga aatagcccag
      961 aaggcccaca aagaaggaac cacgctgaaa gaaatggcag taaaactcgg ctatgtaaca
     1021 cctgaacaat ttgatgaatg ggtggtgccc ggcaacatgg taggcgattt gccctcctga
     1081 gtaaatcatg caacacagac atagagcaga agccggaaat cattttccgg ctttttcatt
     1141 ttgacggccc ggaaatactt cccggctgtt cgcctccatt catttaattt tcagcattca
     1201 aagaatcgca acaatacact cctgcatgag aacaaggttg accatcctgg cgggtctcct
     1261 ggccacagcc atcatcatta cgattgaatg ctgcaaaacc gcagatccta cccctgcccc
     1321 ttcatccaac aacttcactg gcagcgtcag ttgccagggc tgtcaccagc aggagcatac
     1381 cgactggcag cagtcgcacc actacatggc catgcagccc gctaccgaca gttttgtatt
     1441 gggggatttc aacaaccgca cctacaccgc cgatggtgtc acttcccgct tctttaaaaa
     1501 agatggcagg ttctttatca ataccgaagg ggaagatggc agttaccatg actacgaagt
     1561 aaaatacgta tttggattta cgccgctaca gcagtacctg gtcgaatttc ccggtggacg
     1621 catgcaggct acccgtgtta gctgggactg tgtttctaag aagtggtttc accagtatgc
     1681 cggcgacaag ataccggctg gagactggct gcactggaca ggcaatggac aaaactggaa
     1741 caccatgtgc gccggctgtc acagcaccaa cgtgaaaaaa ggatacaacc cggaaaccga
     1801 cacctaccat accacgtata acgacataaa tgtcagttgc gaaagttgcc atggaccggg
     1861 ccagcaacac attgattaca tcaacggaaa cgaatacaag aaaggaaaac gggtagcggg
     1921 ttcactgttg cagttgtacg caggaagcgg gcagatgccg gaggtgaaca cctgcggcta
     1981 ctgccatgca cgccgcgttg acatgacaga aaaagtacct gtaggcgcag aagtgatgca
     2041 agactatatt cctgagttgc caacgcggga attcttttat gctgatggcc agatgaatga
     2101 cgaagattac aattacactt cctttctgca aagccgcatg tttcacaaag gggtgcagtg
     2161 cagcagttgc cacaacccgc acagcggcaa gttaaaactg aacggtcctt tggtttgcgg
     2221 ccaatgccac caagctgaaa aatatgaggc gcctgctcac accctgcacg cacccggcac
     2281 caacaatgtc aactgcatca cctgccacat gccatctaaa gtgtatatgg gcaatgacct
     2341 tcgccacgac catagtttca ggatacc
//
LOCUS       DATIQF010000014         1500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_213153,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000014 DATIQF010000000
VERSION     DATIQF010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213153"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..873)
                     /locus_tag="VLL95_00190"
     CDS             complement(<1..873)
                     /locus_tag="VLL95_00190"
                     /inference="COORDINATES: protein motif:HMM:NF025587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate and iron-dependent oxygenase
                     domain-containing protein"
                     /protein_id="HSR37305.1"
                     /translation="MSIPVVDLSTFTNGSESDRKAFVYELGRAYEDVGFVAVKNHGIP
                     DELIEELYRYVKEFFSLPLPIKKNYEKQELAGQRGYTSFGKEHAKGSTAPDLKEFYQY
                     GQTVEDNDPVASEYPANVAVNEVPQLTPTLFRAYRHFEKSGRALLKAIALYLGLDENY
                     FEPFVVNGNSILRAIHYPPITQEPASAIRAEQHEDINLITLLVGASAEGLQILTKQNE
                     WVGVTALPGQIVVNVGDMLQRLTNNRLRSTTHRVVNPPREHWGTSRFSIPFFLHPKSS
                     MSLACLDNCIDADHP"
     gene            978..>1500
                     /locus_tag="VLL95_00195"
     CDS             978..>1500
                     /locus_tag="VLL95_00195"
                     /inference="COORDINATES: protein motif:HMM:NF022732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3089 domain-containing protein"
                     /protein_id="HSR37306.1"
                     /translation="MIRSLSYLLLTTLLLQSCAGSHQLPDAGNASRLAPDYHELGMWA
                     AHPWKKDPSDSTPRPYITNRKDTMVDVFFIHPTTYTKDDAVANKPYTTQYWNASVLDA
                     ALNSRTDESSILNQASPFNVYRVFAPRYRQAHIHSFSLPDSIAGPFFDTAYADVKNAF
                     EYYLEHFNQGRPFI"
BASE COUNT          347 a          405 c          367 g          381 t
ORIGIN      
        1 ggggtggtcg gcatctatac aattgtcgag gcaggccagg ctcatgctgc ttttggggtg
       61 caggaaaaag ggaatgctga atcggctggt gccccagtgc tcccgtggcg gatttaccac
      121 ccggtgcgtg gtgctgcgaa gccggttgtt ggtcagccgc tgcagcatat cgcccacgtt
      181 taccacaatt tgcccgggca gggctgtaac gcccacccac tcgttttgct tggttaaaat
      241 ctgcaggccc tcggcgctgg cgcccaccaa taacgtgatc aggttgatgt cttcatgctg
      301 ttcggcacgg atggcgctgg cgggctcctg cgtgatggga ggataatgga tagcccgcaa
      361 aatgctgttg ccattgacga caaacggctc aaaatagttt tcatcgaggc cgaggtacag
      421 ggcgatggct ttgagcaagg cccttccgct tttctcaaaa tggcgatagg cacggaacag
      481 ggtgggcgtc aactgcggca cctcattcac cgccacgttg gccggatatt cggacgctac
      541 cggatcattg tcttccaccg tttggccgta ttggtaaaac tctttcaggt cgggagcggt
      601 acttcccttg gcatgttctt tgccaaaact ggtatagccc cgctgccccg ccagctcctg
      661 tttttcgtag ttcttcttga tgggaagcgg caggctgaag aattctttta cgtaccgata
      721 caattcctca atcagttcat cgggtattcc gtgatttttg accgccacaa agccaacatc
      781 ttcgtaggca cgccccaatt cgtagacaaa tgctttgcgg tcactttcgg atccgtttgt
      841 aaaagtggaa agatccacaa ccgggatgct cataggcaaa caattttttg atcagacaag
      901 ccgtcaaaat tgacgttaac gaattaaaat acaaacaaat tttagtttta gcgtcttcat
      961 gcattcattt tgcactcatg ataaggtcac tttcatacct gttgctcacc accctgctgc
     1021 tgcagtcctg cgctggctct caccaattgc ccgatgccgg taatgcatca cgcctggcac
     1081 ctgattacca tgaacttggg atgtgggcag cccatccatg gaagaaggat ccatccgaca
     1141 gcacacctcg accttacatc accaacagga aagacacgat ggttgatgta ttttttattc
     1201 atcctaccac ctacaccaag gacgatgctg tagccaataa accatatacc actcaatatt
     1261 ggaatgcctc cgtgctggat gcggcattga atagtagaac cgacgaaagc agcattctca
     1321 accaggccag ccctttcaat gtgtaccgcg tatttgcgcc acgttaccgg caggcccata
     1381 tccattcgtt ctcgctgccg gacagtattg ccgggccttt ctttgatacc gcttatgccg
     1441 atgtgaaaaa cgcttttgaa tactacctgg aacatttcaa ccagggaagg cccttcatca
//
LOCUS       DATIQF010000015         2032 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_121985,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000015 DATIQF010000000
VERSION     DATIQF010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121985"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            257..1951
                     /locus_tag="VLL95_00200"
     CDS             257..1951
                     /locus_tag="VLL95_00200"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSR37307.1"
                     /translation="MIVTLTFFMFSFGHVQGQDPGKADMLLLNGKVWTGESPDKFEEA
                     LAIKGNKILAVGKTSEIRNWASAETKIIDLKGQLVTAGFNDAHTHFLSGSMGLANVDL
                     NNATSEEEAIKAIVDYAKQHPEKTWITGRGWQYTIFKNGMPTKDLLDKAIPDRPVFMS
                     AYDGHSAWVNSKALEAAGVNSKTPYDGFGSIIKNENGNPTGALTEGAQQLVRKWIPAA
                     SKEEQLAALKIGMQYAASMGITSIQNASGSIPEFSLYENLLQADALTLRSSTAFSVGK
                     NTTEADIAAFAVLKEKYKGHPTLRASAIKFMVDGVIESHTAAMIEPYADTNITGDLAL
                     PEKVYKTLVQQCDAAGFQLYTHAIGDRGVRVALDAYEDAMRKNGQRARRHRIEHIEQS
                     QPADVKRFAKLGVIASMEPIHADPGTVAVWEKAVGKKRLPHSFVWRSMLDNNVQLVFS
                     SDWPACITPNPIRGLHTAVNRKTIDGKPADGWVPEQRISMAEALKAYTQGGAYSSGDE
                     NVLGKLQPGYLADIIVLTKDLFTMPASQVHTTRVALTIANGKLVYQMPLQEEMIKE"
BASE COUNT          575 a          478 c          499 g          480 t
ORIGIN      
        1 atacctttac gactcaccca tgggttctaa ttgtatgaaa catttttccc gctttttcgc
       61 agcccttggc ggctcatttc tttccagcaa tatcgaattt gaaggcaagg aaaaagccga
      121 tgaactattg atgcttcaag acgttttcaa aaaagactat cttgaacaat aaccagcgtt
      181 ttcgtttacc aatcttttgt ttcaactaat tcaacaataa cagaaatatc tccgcccaat
      241 gcttttccgt acctccatga ttgttaccct aaccttcttc atgttcagct ttggccatgt
      301 ccagggccag gacccgggca aagcagatat gcttttgctt aatggcaagg tctggacggg
      361 cgaatcgccg gataaatttg aagaagcatt ggccatcaag ggcaataaga tcctggctgt
      421 tggcaaaaca agtgaaatca ggaattgggc cagtgctgaa acgaagatca ttgaccttaa
      481 aggacaactg gtaactgctg gctttaatga tgcgcatacc catttcctgt cgggctccat
      541 gggtttggca aatgttgacc tgaacaatgc aacatccgaa gaggaggcga taaaagctat
      601 tgttgactat gccaaacaac atccggaaaa aacctggatc accggtcgcg gttggcagta
      661 caccattttc aaaaatggaa tgcccaccaa agatcttctc gacaaagcga tccccgaccg
      721 gcctgttttt atgagtgctt acgacgggca cagcgcatgg gtcaacagca aggcattgga
      781 agcggcaggt gtgaatagca agacccccta tgatggattt ggatcgatca taaaaaatga
      841 aaatggcaac cctacaggtg cccttaccga aggagcgcag cagttggtaa gaaaatggat
      901 ccccgctgca agtaaggaag aacaattggc ggcattgaag atcggcatgc agtatgcggc
      961 ttcgatgggc atcaccagta ttcaaaatgc cagtggctcc atccccgagt tttcacttta
     1021 cgaaaacctg ctgcaagccg atgcattgac gctacggtca tcgactgcat tcagcgtggg
     1081 caaaaacact acggaggcag atatcgcagc atttgcagta ctgaaagaaa aatacaaggg
     1141 ccatcctacc ctacgtgctt cagccattaa gttcatggta gatggagtga tagaatcgca
     1201 cactgccgcc atgattgaac catatgccga caccaatata acgggcgatt tggcattgcc
     1261 tgaaaaagta tacaaaaccc tggtgcagca gtgtgatgct gccggcttcc agttgtatac
     1321 ccatgccatt ggcgacagag gtgtacgggt ggcactggat gcctatgaag atgccatgcg
     1381 taaaaatgga caacgggcca ggagacatcg cattgaacat attgaacagt cgcagccggc
     1441 tgacgtgaaa cgatttgcaa aattgggggt gattgcatcg atggaaccca ttcatgccga
     1501 tcccggcacg gtggccgttt gggagaaggc ggtgggcaaa aaaagactcc cccattcctt
     1561 tgtttggcgg tcgatgctgg acaacaacgt tcagttggta ttcagcagtg actggccggc
     1621 atgcatcacg ccaaatccga tacgcggatt gcataccgct gtcaatcgca aaaccattga
     1681 cggaaagcct gcagatggat gggtgccgga acaacgtatc agcatggcag aagcattgaa
     1741 agcgtatacc cagggtggcg cttattcttc tggtgatgag aatgtgttag gcaaattgca
     1801 acccggctac cttgccgata ttattgtgct aaccaaagac ctgttcacga tgcccgcttc
     1861 gcaggtgcat accacaaggg tagcacttac cattgccaat ggcaagctgg tgtatcaaat
     1921 gcctctccag gaagaaatga tcaaagaatg aaaatctcaa gaacgatatc ctgcctgctg
     1981 attgtgatca ctgctttgat gatctctgtc gattcattgg cgcaggatgg at
//
LOCUS       DATIQF010000016         1619 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_15552, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000016 DATIQF010000000
VERSION     DATIQF010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1619
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15552"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..665)
                     /locus_tag="VLL95_00205"
     CDS             complement(<1..665)
                     /locus_tag="VLL95_00205"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: protein motif:HMM:NF001453.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HSR37308.1"
                     /translation="MELQQGKPSHTDDYRTKGLRKQLVDSIAEKGITDINVLEALRKV
                     PRHFFLDPSLDKIAYEDRAFPIGEGQTISQPYTVAYQSELLEVKPGAKVLEIGTGSAY
                     QATILAAMGAQVYTIERQQKLFDKVALEYPFATEYSNIRFFLGDGFKGLPKYAPFDKV
                     LVTAAAPYVPQPLLDQLKPGGFLVIPVDEGDAQRIKRIIKKPDGRLIEELYDLFRFVP
                     MLKG"
     gene            complement(822..>1619)
                     /locus_tag="VLL95_00210"
     CDS             complement(822..>1619)
                     /locus_tag="VLL95_00210"
                     /inference="COORDINATES: protein motif:HMM:NF014879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37309.1"
                     /translation="VKDSDGNWVLMNGNQTAVLAFNYMMEARKAKGIAQPNDMVIKTI
                     VTTDLINRLAAAYGVACYDVLTGFKYISEMIREKTGTENYIIGGEESYGLMIGDQVRD
                     KDSVSAVALLCEMAAYEKDKGSSLFEKLVDLYVQHGCFQEHLISITKKGMNGQKEIAE
                     MMESYRNNPPKVLGGVAVKTLLDYELRKGTTLASGEVFDIALPKSNVLQFVLEDGSKV
                     SARPSGTEPKIKFYFSVNAPLDSAANYKKVQAGLMSRIEAIIKDMNL"
BASE COUNT          347 a          451 c          383 g          438 t
ORIGIN      
        1 cctttcagca tgggtacaaa gcgaaacagg tcgtacaact cttcaatcaa ccggccatcc
       61 ggtttcttga tgatgcgctt aatgcgttgc gcatcgcctt cgtctaccgg tatcaccagg
      121 aagccgccgg gcttcaactg atccagcaag ggttgcggca catagggcgc agcagccgtt
      181 accagcactt tgtcgaatgg tgcgtatttg ggcaatccct tgaacccatc gcccagaaaa
      241 aaccggatgt tgctgtactc cgttgcaaac gggtattcca atgccacctt gtcaaacaac
      301 ttttgttgtc gctctatggt atacacctgt gcccccatgg ccgccagtat ggtagcctgg
      361 taggcgctgc cggtacctat ttccaaaacc ttggcaccgg gtttcacttc cagcaactcg
      421 ctttggtaag caacggtata cggctggctg atggtttgtc cctcgccaat gggaaatgcc
      481 ctgtcttcgt aggcaatttt gtcaagcgaa ggatcgagga agaaatggcg cggtactttg
      541 cgcagcgctt ccagcacgtt gatatcagta atgcccttct cagcaatgct gtctaccagt
      601 tgcttgcgca gtcctttggt gcggtagtcg tctgtatgac tcggttttcc ctgttgcagt
      661 tccatatcct atactctcgc aatatgaatg attcattcgg aattacacat gccaacggcc
      721 agaaatacac ccggtctgaa taaaaaaaac accggagcag gcagttccca ctccggtgtt
      781 gataaaagca cggtgcaatg agtgcatcga caccgccacc gttacaaatt catgtctttg
      841 atgatggctt caatcctcga catcagccct gcctgtactt ttttatagtt ggcagcgctg
      901 tcgagtggtg cattcacgct gaagtaaaac ttgatcttgg gctcggtgcc actggggcgg
      961 gcactcactt tgctgccatc ttccagcaca aactgcagca cattgctctt gggcagtgca
     1021 atgtcaaaca cttctccgct agccagtgta gtgcctttac gcagttcata atccagcagc
     1081 gttttcacgg ccacaccacc cagtactttc ggcggattgt tgcggtagct ttccatcatc
     1141 tccgcaattt ccttctggcc gttcatgcct ttcttcgtga tgctgatgag gtgctcctgg
     1201 aagcagccat gctgcacata gaggtctacc agtttttcga acaggctgct gcctttatcc
     1261 ttttcatagg cagccatttc gcacaacaat gccactgcac ttaccgagtc tttgtcacgc
     1321 acctggtcgc caatcatcag gccatagctt tcttcgccgc caatgatgta attctctgtc
     1381 ccggtctttt cgcggatcat ttcgctgatg tatttgaagc cggtgagtac atcatagcaa
     1441 gccacgccat acgcagcggc cagccggttg atgagatcag tggtaacaat ggttttgatc
     1501 accatgtcat tgggctgcgc aatgccttta gccttgcggg cttccatcat gtagttaaag
     1561 gccagcaccg ctgtctggtt gccgttcatg agcacccagt tgccatcgct gtcctttac
//
LOCUS       DATIQF010000017         7123 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_228421,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000017 DATIQF010000000
VERSION     DATIQF010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7123
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228421"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1171
                     /locus_tag="VLL95_00215"
     CDS             <1..1171
                     /locus_tag="VLL95_00215"
                     /inference="COORDINATES: protein motif:HMM:NF013998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HSR37310.1"
                     /translation="LLSFLSVFIPFAWFAWKVYRRQVQVAIDNAEEAGKKEIGRRITM
                     EIKPLFRPLLGFLYFRFVYDDVKRSPKFSLIRKSSSMRWLDGLQSGWYHWPLPAIREY
                     EVQQMLVYFEDLFQFFSFSIRLPVKQSFFTRPRQIVEKETQVSPHRTEEENVRVEELK
                     RIEGEYINYKNFEDNDDVRRIVWKIYARNKELVVRIPEILDPYASHIYMYASFHDSLH
                     MPENYLINTRGLDYFKNACWSIYNQLVKDGRMVKFFTDQHIPNRHLNSHHEQVEYSLV
                     ASNWQHDWDLLSHIPHKGNAIVCISSLTDAKHLDQLLQRQQGITLVMVRLSRGIRRNM
                     IGKWLKWIFVRPESDYEKQGFTEIRRFATMRKMKENEAALTKVMDKHGTPVVRIA"
     gene            1176..3809
                     /locus_tag="VLL95_00220"
     CDS             1176..3809
                     /locus_tag="VLL95_00220"
                     /inference="COORDINATES: protein motif:HMM:NF013961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase domain-containing protein"
                     /protein_id="HSR37311.1"
                     /translation="MLAGRIHSRKKELAQYFLLGIPTVLLAGYAIEIANRYLALLENN
                     WMEQTGLFALGVAVAFSLFARRYRFTPITALLVMAAVLIGRFISSGKIGEFDAFFWNV
                     RYSTGAIFFFLGWIVGYGFSRARFFSIAWSVFLLAVMAVVIATLKVVNTDLIIVTFAP
                     LLVYSFYIIYTSELIRNLNEDDPTLLWQITRRLAGFALVMLLLVYGLMQYYKPQFETI
                     EKQWSAGSKPKEDNSPNNSMTHNDGTGSTTNNNMGLNSFNNKANKDSVLFVAKLDNYF
                     PDGTTPNPLYFTTDYYSKFDTETQSFEVDTLRPYNDLFSPDVSKIPLFFTKQDTSVLS
                     KAMSTQFRKVATAEVYKHNLSARLFTAPTTAFFVQPISVPDENKDIYRSAYRAKMLVS
                     ELNSAYFVYNPAGDKDLSGFQEQRFEVLRRAKGYNTLPPLFYNYYTYIPNGNDYDSIR
                     ALAQQIVKEAGATTAVDKTIAIRDYFLRKDENGQPTFRYSDNPGIPGMPSANKLTYFL
                     FQNKKGYCAYYAGATLFMLRALGIPSRVATGFLTVDRSSKNPGWYWFYEDQAHAWVQV
                     FFPEFGWIDFDTTVPDAEQQEAPQPDQTPPLASQTAWLVANGKALTIDTTAKLVTMQI
                     EKMLYWDQPYEFKPQQDLQLDVSMAKITHDTGVVSLAELKRGDNIVAVSYSTAFKDLP
                     PQEEDSSLSLLNKFPKPAPIDEIKIMLSEEEKAAMEKKTAEEVPTDWNKVLLAAIITA
                     FGLLLFFISLPYLTFLYLKLRSARASTNESKQYWRYITTMFYLNQMGIERGAQTPLQY
                     ARHTVDEQFGTSMADFVQVYLKLKYSKLPLSKQELEVADKFYPAVFKTVSSKLKMSYK
                     FSHFLNTRRSIQFFSKPSFFS"
     gene            3842..4828
                     /locus_tag="VLL95_00225"
     CDS             3842..4828
                     /locus_tag="VLL95_00225"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HSR37312.1"
                     /translation="MHTNPNTDAAIQHLQQLIDNIETVIKGKRNQIKYILTALLAKGH
                     ILLEDNPGTGKTVMAKTLAQSISSDNAQEGGVAFKRIQFTPDLLPMDLIGSHIFDEEK
                     KEFIFKRGPLFTNVLLADEINRASPKVQSALLECMAENQITIGDTTYRLNKMFFTIAT
                     QNPIEMEGTYPLPAAQLDRFFIKIIFGYVDETTELEIYNNYLGIADNLQHIQQVLSMQ
                     EILDLQEQAEQVTIHEEIVKSVRNIVWATRKHPDIMLGASTRSGITFLKCLKAYALVN
                     GRSFVIEDDIHDLTLPVLDHRLIYKNKEAKTNALPGILKMEMDRLHKLKIGY"
     gene            4847..6859
                     /locus_tag="VLL95_00230"
     CDS             4847..6859
                     /locus_tag="VLL95_00230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37313.1"
                     /translation="MRYLLTILAVILASQFSSAQKAAARYEIDAKRQGVSPVDKDALP
                     RGREFVRLDSTYYVGWMYQGLYLHDRSVDVSGYQRVLPFLRKAFLLIEKDYSGLLTTI
                     YNDPMFYMQNNLRYNDYLVMARALREAYEYLEMPDSAMWVLNKVEKKNFRRDFLGIYG
                     TKAWIIHRNRFYTNAQYKFLGNSVAENEQKALQACYDGFNYIRKNMAQNNLWFGEFQS
                     QMDRQFIYHYLALIHCYLKNYDSSNYYYQQMADAGTISWNNYGSMKAEIGEFGEAIDM
                     YNRDKYKYGGIKNLMEPYYYLPMLNIYAGKTKEAMDIAKEAIAYSNSSPGFGWYNLAL
                     ARSFMYNGQLDSAWITLEKAANFKEVHIGTTLTQPQYDFTVGLLRLVWYYQKINAVKF
                     LHPNWWYHPIWLYEVAALEAKKYTHEYVLANQLALNPQRARIIYDLFCGESTVSYDEI
                     YYLMERFSPSYFMKLMTDYYKSDPRIRIKPYFELYQARLLWHREKYGEAGTIYTNLLN
                     KSNIDSVNEKLFMARLYEGLWQKAVRDKNSSAAVKYQNLLFEYYPTLIPFSNLPFQLQ
                     LQTKGLNNAVVQSVIKDLKTTSLNISNAKGIPKATLSFAQKGIKYEVTIDVYNENGIL
                     KFTERFLFKDATDVAAEIAFRIFGKKGGIELEPAAAPQKTASKTNP"
BASE COUNT         1984 a         1798 c         1662 g         1679 t
ORIGIN      
        1 gctgctcagt ttcctcagcg tattcattcc gtttgcgtgg tttgcctgga aagtgtaccg
       61 ccggcaggtg caggtggcta ttgacaatgc cgaagaagcc ggcaaaaagg aaatcggacg
      121 gcgcatcact atggaaataa aaccgctgtt tcgccccctg ctgggtttcc tgtatttccg
      181 gtttgtgtac gatgatgtga agcggtcccc caagttttca ctgatccgca aaagcagcag
      241 catgcgctgg ctcgacggct tgcaaagcgg ctggtaccat tggccactgc ctgccatccg
      301 cgaatacgaa gtgcagcaaa tgctggtgta cttcgaagac ctgttccagt ttttcagttt
      361 cagcattcgc ctgcccgtga agcaaagctt ttttaccagg cccaggcaaa tagtggaaaa
      421 ggaaacacag gtatcaccgc accgtaccga ggaagaaaat gtgcgggtgg aagaactaaa
      481 gcgaatcgaa ggagaataca tcaactacaa gaattttgaa gacaacgatg atgtgcgccg
      541 cattgtctgg aaaatttatg cccgcaacaa ggaactggtg gttcgcattc cggagatcct
      601 tgatccttac gcttcgcaca tttacatgta tgccagtttt cacgactcgc tgcacatgcc
      661 ggagaattac ctcatcaata cccgtggtct cgattatttt aaaaatgcct gctggagcat
      721 ctacaaccag ttggtgaaag acggacgcat ggtaaagttc tttaccgatc agcacatccc
      781 taaccggcat ctcaactcac accacgagca ggtggagtat tcactggtag ccagcaactg
      841 gcaacacgat tgggaccttc tcagtcacat tccgcacaaa ggcaacgcca ttgtctgcat
      901 ctccagtctt accgatgcca aacacctcga ccagttgctg cagcggcagc aaggcattac
      961 attggtgatg gtgcgattga gccggggcat tcgccgcaat atgattggca agtggctgaa
     1021 atggattttt gtgcggccgg aaagcgatta cgaaaaacaa ggatttacag aaataagaag
     1081 gtttgccacc atgcgcaaga tgaaagaaaa tgaggcagcg ctgaccaaag tgatggacaa
     1141 gcatggcaca ccggtggtaa gaatagcgta acaaaatgct ggcaggaaga atacatagca
     1201 ggaaaaaaga attggcgcaa tatttcttat tgggcatacc cactgtattg ctggcgggat
     1261 atgccattga aatagccaat cgctacctgg cattgctcga aaacaactgg atggagcaaa
     1321 caggtttgtt tgccctgggc gttgcggtgg cgttttcgct ttttgcccgg cgttatcgct
     1381 tcactcccat tacggcattg ctggtaatgg cggcggtact cattggccgt ttcatcagca
     1441 gcggaaaaat tggcgagttc gatgcgttct tctggaatgt gcgttacagc accggtgcca
     1501 tattcttttt tctcggctgg atagtaggct atggtttttc gagggcccgg tttttcagca
     1561 tcgcctggag tgtgttttta ctggccgtca tggcggtggt aattgccacg ctgaaggtgg
     1621 taaatactga cctgatcatt gtgacgtttg cgccactgct ggtatacagc ttttacatca
     1681 tttacaccag cgaactgatc aggaatctca acgaagatga tcccaccttg ctttggcaaa
     1741 tcacgaggcg tctggccggg tttgcactcg tcatgctgtt gctggtgtat ggcttaatgc
     1801 agtattacaa gccgcagttt gaaaccattg aaaaacaatg gtcggccggc agcaaaccca
     1861 aagaagacaa cagccccaac aacagcatga cccacaacga cgggacaggc tctaccacca
     1921 acaacaatat ggggttgaac agtttcaaca acaaggccaa caaagattct gtgctgttcg
     1981 ttgccaaact cgacaactat ttcccggatg gcaccactcc caatccgcta tactttacca
     2041 ctgattacta ttccaaattc gataccgaaa cgcaatcatt cgaagtagac acgcttcgcc
     2101 cctacaacga ccttttcagc ccggatgttt ccaagattcc tttgtttttt acaaagcagg
     2161 atacttcggt gctcagcaaa gccatgagta cccagttcag gaaagtggcc acagcagaag
     2221 tgtacaagca taatttgagt gcacgcttgt ttaccgcacc caccactgca ttttttgtgc
     2281 agcccatttc ggtacctgat gagaacaaag acatttaccg cagtgcctat cgggccaaga
     2341 tgctggtcag cgaattgaac agcgcctact ttgtgtacaa ccctgccggc gacaaagacc
     2401 tgtcgggatt ccaggaacaa cgatttgaag tactgcgaag agccaaaggc tacaacaccc
     2461 tgccaccgct gttttacaac tactacacct acattcccaa tgggaatgac tacgacagca
     2521 tcagggcttt ggcacagcaa atagtgaaag aagctggcgc tacaacggcg gttgacaaaa
     2581 caatagccat ccgggattat ttcctgcgca aagacgaaaa tggccaacca actttccggt
     2641 attccgacaa ccccggcata ccgggtatgc ccagcgccaa caaactcacc tattttcttt
     2701 ttcaaaataa aaaaggatac tgtgcgtatt acgccggcgc cacgcttttc atgttgagag
     2761 cattgggaat accaagccgt gtcgccacag gattcctcac agtagacaga agcagcaaaa
     2821 accccggctg gtattggttt tacgaagacc aggcgcatgc ctgggtgcag gtcttcttcc
     2881 cggaatttgg ctggattgat tttgacacca ctgtgcccga tgcggaacag caggaagcgc
     2941 cacaacccga ccaaacgcca ccattggcct cacaaaccgc ctggctggtg gccaacggta
     3001 aagcattgac cattgacacc acggctaaac tggtgaccat gcagatcgag aaaatgctgt
     3061 attgggatca gccgtatgaa ttcaaaccac agcaggatct gcaactcgat gtgtccatgg
     3121 ctaaaataac ccatgacaca ggtgtggtaa gcctggccga actgaagcgt ggtgacaata
     3181 ttgtggccgt ctcctactcc acagccttca aagacctgcc cccgcaggaa gaagattcct
     3241 ctctttcatt gctcaataaa tttcccaagc cggcacccat tgacgaaatc aagatcatgc
     3301 tgagtgagga agaaaaagcg gccatggaaa agaaaacagc ggaagaagtg cccacggatt
     3361 ggaacaaggt tttgttggca gcaattatta ctgcgttcgg actgctgcta ttcttcatca
     3421 gcctgcccta cctcactttc ctctatctca aactgagaag tgcccgggca tccaccaacg
     3481 agtcgaaaca gtactggcgc tacatcacca ccatgttcta cctcaatcaa atgggaatag
     3541 agcggggcgc ccaaacacca ttgcaatatg cccgccatac agtggatgaa cagtttggca
     3601 cttccatggc cgattttgta caggtgtacc tgaaactcaa atacagcaag cttccattga
     3661 gcaagcagga actggaagtg gcagacaaat tctatcccgc tgtattcaaa acagtttcct
     3721 ccaaactcaa aatgtcttac aagttctcac acttcctcaa tacccgtcgc tccattcagt
     3781 ttttcagcaa accatctttt ttttcataat aaccacgcat tccattttaa aaaaagtagt
     3841 catgcatacc aaccccaaca cagatgcggc tattcagcac ctgcaacagt tgatcgacaa
     3901 tattgaaacg gtcatcaagg gcaaacgcaa tcaaatcaaa tacatcctga ccgcgttgct
     3961 ggccaagggt catatcctgc tggaagacaa ccccggcact ggtaaaaccg tgatggctaa
     4021 aacgctggcg caaagcatca gctctgacaa tgcacaggaa ggaggcgtgg cattcaagcg
     4081 catacagttt acccccgacc tgctgcccat ggatcttatc ggctctcaca tttttgatga
     4141 agagaagaaa gaattcattt tcaaacgggg tcctttgttt accaacgtgc tgctggccga
     4201 tgagatcaac cgtgcttccc ccaaagtaca gtcggctttg ctggagtgca tggccgaaaa
     4261 ccagatcacg attggcgata caacttaccg gctcaataag atgttcttca ccatcgccac
     4321 gcagaacccc attgagatgg aaggcactta tcccctgccg gctgcacaat tagaccgctt
     4381 ctttatcaaa atcatttttg gctacgtgga tgaaaccacc gagctggaga tctacaacaa
     4441 ctacctggga attgctgata acctgcagca cattcagcag gtgctttcca tgcaggagat
     4501 actggacctg caggagcagg ccgagcaggt aaccatacat gaagaaattg taaagtctgt
     4561 tcgcaacatt gtgtgggcta cccgcaaaca ccccgacatc atgctcggcg cttctacccg
     4621 cagtggtatc accttcctga aatgtttgaa agcctatgcg ctggtgaatg gccgctcctt
     4681 tgtgattgaa gacgacatcc atgacctgac tttaccggta ctggatcacc gcctgattta
     4741 caaaaacaag gaagcaaaaa ccaatgcatt gccaggcatc ctcaaaatgg aaatggaccg
     4801 cttgcacaaa ctaaaaatcg gatactaacc cagaatcacc agatcgttgc gttaccttct
     4861 taccatactc gcagtaattc ttgcttcgca attttcgtcg gcacaaaaag ctgccgcccg
     4921 gtatgaaata gatgccaagc gacaaggcgt gtcaccggtg gacaaagatg ccttgccccg
     4981 cggtcgcgaa tttgtacggc tcgacagcac ctattatgtg ggctggatgt accagggctt
     5041 gtatttgcat gaccgcagtg tggatgtgag tggttaccag cgagtcttgc catttctgcg
     5101 gaaagccttc ctgctgatag aaaaggatta cagcgggctg ttgacgacca tttacaacga
     5161 cccgatgttt tacatgcaga acaacctgcg gtacaacgac tacctggtga tggcccgggc
     5221 tttgcgtgaa gcgtatgaat acctcgagat gccggacagc gccatgtggg tgttgaacaa
     5281 ggtggaaaag aaaaacttcc gccgcgattt cctcggcatc tatggcacca aggcatggat
     5341 cattcatcgc aaccggtttt acaccaatgc gcaatacaaa tttcttggca acagtgtagc
     5401 agagaacgaa cagaaagcat tgcaggcatg ctacgatggc ttcaattaca tccgcaagaa
     5461 tatggcgcaa aacaacctct ggtttggtga attccaaagc cagatggatc gccagtttat
     5521 ttaccactac ctcgccctca tccattgcta cctcaagaac tacgacagca gtaattacta
     5581 ctaccagcaa atggccgatg ccggcaccat cagttggaac aactatggca gcatgaaggc
     5641 agagatcggc gagtttggcg aagccatcga tatgtacaac cgcgacaagt acaagtatgg
     5701 cggcatcaaa aacctgatgg agccctacta ctacctgccc atgctgaaca tatatgcagg
     5761 taaaaccaaa gaggccatgg acattgccaa ggaagccatt gcctattcca attcatcgcc
     5821 agggtttgga tggtacaacc tggcactggc ccgcagcttt atgtacaacg ggcaattgga
     5881 cagtgcatgg atcacattgg aaaaggctgc caactttaaa gaagtgcata ttggaaccac
     5941 gcttacacaa cctcaatatg actttacggt aggattgctg agactcgttt ggtattacca
     6001 aaagatcaat gctgtcaagt ttctgcaccc caactggtgg tatcatccga tctggctgta
     6061 cgaggtggca gccctggagg cgaaaaagta cacacatgag tatgtgctgg ccaatcaact
     6121 ggcattgaat ccgcagcgtg ccaggatcat ttatgaccta ttctgtggcg aaagcacggt
     6181 gagctatgat gagatttact acctgatgga acgcttcagt ccatcgtatt tcatgaaact
     6241 gatgacagac tactacaagt ctgatcctcg cattcgcatc aaaccgtatt ttgaattgta
     6301 ccaggcgagg ctgttgtggc accgcgaaaa atatggagag gccggcacta tctataccaa
     6361 cctgctgaac aagtcgaata tagacagtgt gaatgaaaag ttgttcatgg caagactgta
     6421 tgaaggcctg tggcaaaaag cagtgaggga taagaacagc agtgccgcgg tgaagtacca
     6481 gaatttattg tttgaatatt acccgacact gataccgttt tccaacctgc catttcaact
     6541 gcagttgcag accaaagggt tgaataatgc cgtggttcaa tccgttatca aggatttgaa
     6601 gacgaccagc ctcaatattt caaatgcaaa gggaataccg aaggctaccc tcagttttgc
     6661 gcaaaaagga atcaagtacg aagtgacgat tgacgtgtac aacgaaaatg gcatcctcaa
     6721 attcacagaa cgctttttat tcaaagacgc caccgatgtt gccgctgaaa tagccttcag
     6781 gattttcggg aagaaaggcg gcattgaact ggagccggca gcggcaccac aaaagactgc
     6841 ttccaaaacc aatccttgat tgctgaagtg gcagcggctt aacaccattc ctctttttga
     6901 tggagcgtat ttccgtcgcc gcttggaatt cctgcttatt gcagtgttgg ctttgccaac
     6961 aagaaacttt acaacggttt tattgctttg cctggtgcac taccatttgt gcaaaaggta
     7021 tttctatccc cttctctttg aaagctctat caatcgccag gattatttcg ctttttgagt
     7081 tgatccaaag ttcaatgtcc gtccagaaga gcagcctgaa atc
//
LOCUS       DATIQF010000018         3628 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_61194, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000018 DATIQF010000000
VERSION     DATIQF010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3628
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61194"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1841)
                     /locus_tag="VLL95_00235"
     CDS             complement(<1..1841)
                     /locus_tag="VLL95_00235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37314.1"
                     /translation="MCRIYLNIISLALLPQLLAAQTVKEVNSVPQLLSARTGEVRMAA
                     GQYVIADNAELPEGLVIRAEKGVRFQIAAGRKLQVRATIVADARSVLWEGEGEPELYP
                     TAMKEVSVCHFGAIAGDNRDDADAIMKAVRSAQRIGTIYFPAHEYEKPYTISKTIEFF
                     SPLRVSNWHVIGDKTADGVQNEEMVSRIVYTANSGPCFSFRGQRLGYMANLNIDGMNK
                     KPQEMVDKLRNTTACWNPENWNSPGIDMSKYNAHSAVAFDWDKNPGGNGSPWSAQFIM
                     EKCRFSYFAVGINISPNTGYQADTYKFRDVKMWYCTYGVSIGQDQARSIDFENMWMDG
                     MYAAYVNNRFGRGNGSAFNVTGGQYTTIFRLLETTTAYRGQCHLSGLFLEGCGMLGTA
                     VGLGINNNALVFTGCEFGLDNDGYNNNDGMHWITPLLTFQSGSNVLFNGCNFNVKKEE
                     LGFDTGDGFIQFNGCAFQTLKRFFFSNQNQVSFSGRSTYRENEVSNSYYPEDIVPLRN
                     DERYSVRPNVKSLQLYSNQSEGMSFQTLPARCAIPAWYQAATSNLPSTDAKQFSLTLN
                     AADAAKILVGDYLNTVTDNKEKVANMNLGFGGNMIPGLKVVSKNGNQ"
     gene            complement(1968..2630)
                     /locus_tag="VLL95_00240"
     CDS             complement(1968..2630)
                     /locus_tag="VLL95_00240"
                     /inference="COORDINATES: protein motif:HMM:NF025015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SdpI family protein"
                     /protein_id="HSR37315.1"
                     /translation="MKHKSFAWLILLAMVALPFAYAWYLYPYLPDTIPTHFGANGQPD
                     QYGSRESIFIVPAILAVVSLIVYLLLTNIHRIDPKRYQQPTDNALYLQFALFVVLFMS
                     LLSLVIIYSMSHPGTGFEKLILPLLGGFFAGMGMFMPGFQPNYFVGLRLPWTLDNENN
                     WKATHRLAGKVWTVGGIVIALAGIITRGTLSVALFFGGLLTMILIPVVYSYQLFRKGN
                     PE"
     gene            2758..>3628
                     /locus_tag="VLL95_00245"
     CDS             2758..>3628
                     /locus_tag="VLL95_00245"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase family
                     protein"
                     /protein_id="HSR37316.1"
                     /translation="MSSRRKFIRQSAYTVLALSLAQQAAWAKGNTKYLTGLQLYSVRD
                     DMKRDPLGTLRALANMGYRHVEHANYVDRKFYGYAAVEFRKILDDLGMKMPSGHTVLK
                     KEHFDDAKNDFTDAWKYTVEDAAYMGQQFVISPSMDAVLRKDYDALRRQMEVFNKAGE
                     LCRKHGMRFGYHNHDFEFSETLNGRTLYDIILKETDAKLVIQQLDTGNLYNGGANAAD
                     IVRLYPGRFASLHVKDEIAVAGAQEKYESTILGKGIVPLQDILKTILKSQPDAHLIIE
                     QEAYQGKAPLQSMQ"
BASE COUNT          911 a          891 c          911 g          915 t
ORIGIN      
        1 atttggtttc cgttcttgga aaccaccttc aacccgggta tcatgttgcc tccaaaaccc
       61 aggttcatat tagccacttt ctctttgttg tctgtcacgg tgttgaggta atcacccacc
      121 agtattttgg cggcatcagc ggcattcagt gtaagagaaa actgtttggc atcggtagat
      181 ggcaggttgc tggtagctgc ctggtaccac gctggtatag cgcagcgggc cggcaatgtt
      241 tggaatgaca ttccttcgga ctggttgctg tacagttgca gtgatttcac gttgggccgt
      301 acgctgtaac gttcatcatt gcgcaggggt acaatgtcct ccggatagta actgttgctt
      361 acttcatttt cacggtatgt acttcgccca ctgaaagaaa cctggttctg gttgctgaag
      421 aaaaatcgtt tcagtgtctg gaaggcacaa ccattgaact ggatgaaacc atcgccggta
      481 tcaaacccga gctcctcttt cttcacgttg aagttgcagc cgttgaaaag cacattgctg
      541 cccgactgga aagtgagcag tggtgtgatc caatgcatgc catcgttgtt gttgtagcca
      601 tcattgtcaa gtccaaattc acagccggta aataccagtg cattgttgtt aatgcctaaa
      661 ccaacggccg tacccagcat gccacatcct tccaggaaaa gacccgaaag atggcactgg
      721 cccctgtagg cggtagttgt ttcgagcagg cggaagatag tggtgtattg tccgcctgta
      781 acgttgaagg cgctgccgtt gccacggcca aaacggttgt ttacataggc ggcatacatg
      841 ccatccatcc acatgttttc aaaatcgatg ctccgtgcct ggtcttgccc aatggaaacc
      901 ccataggtgc agtaccacat tttcacgtcg cgaaatttgt aagtatcagc ctggtagccc
      961 gtgttggggc tgatgttgat gcccacggca aaatagctga agcggcattt ttccataatg
     1021 aattgggcgc tccatggaga gccgttaccg cccgggtttt tgtcccagtc gaaagctacc
     1081 gcactgtgtg cgttgtactt gctcatgtct atgccggggc tgttccagtt ttcaggattc
     1141 cagcaggcgg ttgtattccg cagtttgtct accatttcct gcggtttctt gttcatgcca
     1201 tcaatattga ggttggccat ataacccagg cgctgtccgc gaaagctgaa acagggtccg
     1261 ctgttggcgg tgtatacgat gcggcttacc atttcttcgt tctgcacacc atcggctgtt
     1321 ttatcgccaa tgacatgcca gttggataca cgcaacggac tgaagaattc aatggtcttg
     1381 ctgatggtat aaggcttttc gtattcatgc gctggaaaat aaatggtgcc aatgcgttgt
     1441 gcgctgcgca ctgctttcat tatcgcgtcc gcatcgtccc tgttgtctcc ggctatggca
     1501 ccaaagtggc aaacactcac ctccttcata gcggtgggat acagttccgg ctcgccttca
     1561 ccctcccaca ataccgaacg ggcatcagcc acaatggtgg cacgcacctg cagtttccgg
     1621 ccggccgcaa tctggaaccg gacgcctttt tccgcccgga ttaccaggcc ttccggcaat
     1681 tctgcattgt cagcaattac atactgacct gcggccattc gaacttcacc tgttcgtgcc
     1741 gacagcaact gtggtactga gtttacttct tttactgttt gagctgccag cagttgtggc
     1801 aaaagagcaa gactgatgat gttcagataa atgcgacaca tatttctaat ttgaatgaat
     1861 tgcctgcgca agcagaagga ctgggattat gactggtctg ttttccagga tgaattttgt
     1921 ggtgaatgga gggaaatcat aagacaaacc ctcatgatca tttcatttta ttcaggattt
     1981 cctttcctga acaactggta tgaatatacc acagggatca ggatcatggt cagcaagcct
     2041 ccaaaaaaaa gtgccaccga caatgtacct ctcgtaataa tgccggctaa tgcaatgacg
     2101 atgccaccca cagtccacac tttgcctgcc agccggtgcg tggctttcca gttgttttcg
     2161 ttatcgagtg tccagggcaa ccgcagcccg acaaaatagt tgggctgaaa acctggcatg
     2221 aacatgccca tgcctgcaaa aaaaccaccc agcaacggca ggatcagttt ttcaaagccc
     2281 gtacccggat ggctcatcga atatattatc accaggctga gcaagctcat gaaaagcact
     2341 acgaaaagtg caaactgcaa gtacagggca ttgtccgtgg gttgctggta tcgcttggga
     2401 tcgatgcggt gaatattggt gagcagcaaa tacacgatca ggcttaccac cgctaaaatg
     2461 gcgggtacga taaatatgct ctcccggctg ccatactggt ctggctgtcc gttggcgcca
     2521 aaatgcgtag ggatcgtatc gggcagataa ggatacaaat accaggcata agcaaatggc
     2581 aatgcaacca ttgccaacag gatgagccag gcaaatgact tgtgtttcat ctcagaaatt
     2641 ttgctgtaga aagatactca tttgcagcag ggcttccgct tcattttatt ttcttgatgt
     2701 gttactgcac gccgatactg ggtatccact aaattgtgat cgataaaaaa cgagagcatg
     2761 tcatcacgca gaaaattcat ccgtcagtca gcctatacgg tgcttgccct ttcgctggcg
     2821 caacaagcag catgggcaaa gggtaatacg aaatacttaa cgggcttgca gttgtattca
     2881 gttcgcgacg atatgaagcg tgaccccctg ggcaccctgc gtgccctggc taatatggga
     2941 tacaggcacg tggagcatgc caattatgtt gaccgcaagt tttacggcta tgccgcggtt
     3001 gagttcagga aaattctcga tgacctgggc atgaaaatgc cgagcggaca taccgtattg
     3061 aaaaaggaac atttcgatga tgctaagaac gattttaccg acgcatggaa atacacggtg
     3121 gaagatgcgg cctacatggg gcagcagttc gtgatcagcc catccatgga tgcggtattg
     3181 cgaaaagact atgatgccct gcggcgccaa atggaagtgt tcaacaaagc cggtgagttg
     3241 tgccggaaac atggtatgcg ctttggctac cacaaccacg attttgagtt cagcgaaacc
     3301 ctgaatggcc gcaccttgta cgatatcatc ctgaaagaaa cagatgccaa actggtgata
     3361 cagcaattgg ataccggcaa cctgtacaat ggtggtgcca atgctgccga catcgtgaga
     3421 ctgtacccgg gtcgctttgc ctcgctgcat gtaaaagatg aaatagctgt ggcgggtgcc
     3481 caggagaaat acgaaagcac cattcttgga aaaggcattg tgcctttgca ggacattctg
     3541 aaaacgattc tgaaaagcca gccagatgcg cacctcatca tagaacagga agcctaccag
     3601 ggaaaagcgc cgctgcaaag catgcagg
//
LOCUS       DATIQF010000019         1815 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_15605, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000019 DATIQF010000000
VERSION     DATIQF010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1815
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15605"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..890
                     /locus_tag="VLL95_00250"
     CDS             <1..890
                     /locus_tag="VLL95_00250"
                     /inference="COORDINATES: protein motif:HMM:NF023128.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR37317.1"
                     /translation="IAAPEDRDRISARGYTMGYIGSVILQIIGFVLVVSMAGNEGMAT
                     RITFLLVGIWWFGFAQITFRGLPASESKDVVRGNVFADGFKEIGKVYREVKTMPVLKR
                     FLRGFFFYSMGVQTVMLAATQFGSKVLALPDTNLIITVVLIQLVAIPGAILMSRLSGK
                     FGNLIVLMGVVLLWIGICIAAYLTVQFKESGGNAESPFYGLAVAVGLVMGGIQSLSRS
                     TYSKLMPDTKDTASYFTYYDFSEKIAIVLGLFTFGFVDGMLGMKYSVLFLIVFFVIGL
                     LWLYSARFWQKRHIVPVAA"
     gene            907..1767
                     /locus_tag="VLL95_00255"
     CDS             907..1767
                     /locus_tag="VLL95_00255"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSR37318.1"
                     /translation="MKLHVINTGFFKLDGGAMFGVVPKVMWNKLNPADENNLCNWAMR
                     CLLVETGDRLILIDNGIGDKQDARFLSHYYLSGDETLDSSLAAAGFSKDDVTDVILTH
                     LHFDHCGGSIVRDGDKLVTAFRNAVYWSNERHWQWATKPNDREKASFLKENILPIQES
                     GQLHFIPIAETGTVPFSNVPGVNIRYAFGHTDAMMLPQVEVNGRTVVFMADLLPSPAH
                     MPLPYVMAYDMFPLTTLQEKKAFLEEAADKDFLLFFEHDPVIECCNLVRTEKGIRPGE
                     TGPLSAFIGA"
BASE COUNT          428 a          435 c          501 g          451 t
ORIGIN      
        1 aaattgcagc gccggaagat cgtgaccgca tcagcgcccg gggctacacc atgggctaca
       61 tcggttctgt cattttgcag atcatcgggt ttgtactggt ggtgagcatg gctggcaatg
      121 aaggaatggc tacccgtatt accttcctgc tggtaggcat ctggtggttt ggttttgcgc
      181 agatcacgtt caggggattg cccgcatcgg aaagcaaaga cgtggtgcgt ggcaatgtat
      241 ttgccgatgg tttcaaagag attggcaaag tgtaccgcga agtaaaaacc atgcctgtgc
      301 tcaagcgttt tctccggggc tttttctttt acagcatggg cgtgcaaacc gtaatgctgg
      361 ccgccaccca attcggcagc aaagtgctgg cattgccgga tacgaacctc ataattaccg
      421 tggtcctaat ccagttggtg gccatcccgg gtgccatcct gatgagccga ttgagtggaa
      481 aatttggcaa cctcattgta ttgatgggcg tagtgctttt atggatcggc atttgcatag
      541 cggcctatct caccgtgcag ttcaaggagt cgggcggcaa tgcggaatcg cccttttatg
      601 gcctggccgt tgcagtgggt ttggtaatgg gaggtattca atcgttgagc cgcagcacct
      661 acagtaaatt gatgccagac acaaaggaca ctgcctccta tttcacctat tacgatttca
      721 gcgagaagat tgccatcgtt ctgggcctgt tcactttcgg atttgtggat ggcatgctcg
      781 gcatgaagta ttccgtgttg ttcctgatcg ttttctttgt catcgggttg ttgtggttgt
      841 attcagcgag gttctggcaa aaacgacaca ttgtacccgt ggcagcgtaa aatcaaatca
      901 atcgaaatga aactacatgt catcaatacc ggcttcttca aattggatgg cggcgccatg
      961 tttggagtgg tgcccaaagt gatgtggaac aaactgaacc cggccgatga aaacaatctt
     1021 tgcaactggg ccatgcgctg cctgctggtt gaaacaggcg atcgcctgat cctcattgac
     1081 aatggcattg gtgacaagca ggatgccagg tttctcagcc attactatct cagtggtgat
     1141 gaaacactcg acagcagcct ggcagcagcc ggcttcagca aggatgatgt tacggatgtg
     1201 attctcacgc acctgcattt cgatcattgt ggcggcagca ttgtacgcga cggcgacaaa
     1261 ttggtgactg cattcaggaa cgccgtttac tggagcaatg aaaggcactg gcaatgggcc
     1321 accaaaccca acgacaggga aaaggcttcc tttctgaaag agaacatcct gcccatacag
     1381 gaaagcgggc aattgcattt cattcccatt gccgaaacag gcacggtccc cttcagcaat
     1441 gtgcctggag tgaatatccg ttacgccttt ggtcataccg acgccatgat gctgccgcaa
     1501 gtggaagtga atggcagaac cgtcgtgttc atggcagatc tgctgccttc gccggcacac
     1561 atgcccctgc catatgtaat ggcttacgat atgttcccgc tgacgacgct gcaggaaaag
     1621 aaagccttcc tggaagaagc ggctgacaaa gacttcctgt tgttttttga acacgacccg
     1681 gtgatagaat gctgcaacct ggtgcgcaca gaaaaaggga tcaggccggg tgaaaccggt
     1741 ccgttatcag catttatcgg ggcgtaattt gtcaacgcaa ttccagcagg gcggtgagcg
     1801 gatggcgcag gttgt
//
LOCUS       DATIQF010000020         3442 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_152475,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000020 DATIQF010000000
VERSION     DATIQF010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3442)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3442
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152475"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            13..1962
                     /locus_tag="VLL95_00260"
     CDS             13..1962
                     /locus_tag="VLL95_00260"
                     /inference="COORDINATES: protein motif:HMM:NF015714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0030420 - establishment of competence for
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HSR37319.1"
                     /translation="MAWLMMKRRPLLSSLLLSMALCLLGMAMVQWRYLRQDKYFIGRH
                     YKKSDWVMATLLEPPVPKAKSIKADASVKIVLPDGKLIPVKGNIILYLEKTGNAAALT
                     YGSTIVFRKALQPIRNAGNPGSFDYAAYAARQGIFYQAFLKQNEYRQTAFVQGNHFQR
                     QLFNIRQWVLQRLVQYIKSPDASGVAQALLIGYRGDLDKALVEQYANTGVVHIIAISG
                     MHLGMIYTLLLVLLKPLGQSRRMQVLRLVIVLAIIWLFSFLTGAAPSITRAAIMFTLL
                     SVGQLLYKNSSIYNTLSAAAILLLLINPYNLWDVGFQLSFAAVLSIAVFYQPILHWWT
                     PKNWLLSKLWQLMAVTIAAQLLTLPFGVYHFHQFPVYFLLANLVAVPLSGLALYGLLL
                     LLAFCWWPAAASAIGWLTAQMLVALNLFIQWVNGLPFTTLSHIQISLLQAALLLLLIL
                     LLAWWGLRRYPPALVAGLSSLVLFVAMQTWRVYHDSRQHLLVVYNIPQYTGIDYLQGR
                     QSTFVGDTAIALPGFLQNFHVLPSRILLQSKPHRQLLLQSKTNTELTIGQQRWLILRS
                     QIDYRRSKEVQADVLLISGNPPGNPARVLSVIKPRQIIIDGSNSSGRIARWKSAADSL
                     HLRLHSVPDQGAYVVHLPAFGPGHP"
     gene            2010..>3442
                     /gene="purH"
                     /locus_tag="VLL95_00265"
     CDS             2010..>3442
                     /gene="purH"
                     /locus_tag="VLL95_00265"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: protein motif:HMM:NF002049.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HSR37320.1"
                     /translation="MNKQIRRALISVFYKDGLETLVPTLHQQGIEIVSTGGTQGFIEK
                     LGIPVVPVENLTSYPSILGGRVKTLHPVVFGGILGKRADAVHLQEMAEYKIPEIDLVI
                     VDLYPFEETVANTSEESAIIEKIDIGGTSMIRAAAKNFSDLVVISSKDDYDVLNEMLI
                     RQNGSTTLEQRRVFAAKAFEVVKKYDIAISDYFLGTTPDLGIRKTLRYGENPHQSATF
                     DGNLNELFDQVNGKELSYNNLVDVDAAMQLIREFEAGQSKTFAIIKHTNVCGISQRPT
                     VNEAWDAALAGDPESAFGGVLVCNGSIDLATADAINEIFFEVLIAPAFDADALAVLKS
                     KKNRILLQLKAQPASITQYRSLLNGVLSQNNDIGNYTEWKEVGARETTAAEKEELAFA
                     NLVCKHLKSNAIALVKNGQLVGKGCGQTSRIDALRHAIEKAKQFNFDLQGAVLASDAF
                     FPFDDCVKIAHEAGIQAFIQPGGSIRD"
BASE COUNT          811 a          964 c          885 g          782 t
ORIGIN      
        1 ctctgcgccc tgttggcctg gctcatgatg aaacggaggc cgctactttc ttcccttttg
       61 ttatcgatgg ctttgtgcct gttgggaatg gcaatggtac aatggaggta tctcaggcag
      121 gacaaatatt ttatcggcag gcattacaaa aaatccgatt gggtaatggc cacactcctg
      181 gagccgccag tgcccaaagc aaaatccatc aaagcagatg ccagtgtaaa aatcgtttta
      241 cccgatggaa agttaatccc cgtcaaaggc aacatcattc tctaccttga aaaaacaggt
      301 aatgctgcag cgctcaccta tggcagcacc attgtgttcc gcaaggccct tcaacccatt
      361 cgcaatgccg gcaatcccgg cagttttgat tatgcggcct atgcagcgag gcaaggcatt
      421 ttttaccagg ccttcctgaa gcaaaacgaa tatcggcaaa cagccttcgt acaaggaaat
      481 cattttcagc gccaactctt caacattcgc caatgggtgc tgcagcggtt ggttcaatac
      541 atcaaatcgc ccgatgccag tggagtggcg caggcattgt tgattggcta ccgcggcgac
      601 ctcgacaaag ccctggtgga gcagtacgcc aatacgggag tggtacacat cattgccatc
      661 agcggcatgc accttggcat gatctatacc ctgctgctgg tgctgttgaa acctctgggc
      721 caaagcaggc gaatgcaggt actgcggttg gtaattgtac tggccatcat ctggcttttt
      781 tcctttctta ccggtgcggc tccctccatc acccgggcag ctatcatgtt cacattgctg
      841 tccgtagggc aattgttgta caaaaacagt tcgatataca acacattgtc tgctgccgct
      901 atcctgctgc tgctcatcaa tccttacaac ctgtgggatg tgggctttca attgagcttt
      961 gccgcggtgc tcagcatcgc tgttttttac cagcccatcc tgcattggtg gactcctaaa
     1021 aactggttgc tatccaaact ctggcaactc atggcggtga ccattgcggc gcagttgctc
     1081 accctgcctt ttggggttta ccatttccac cagttcccgg tgtatttttt gctggccaac
     1141 ctggtagcgg ttcccttgag tgggctggcc ttgtatggat tgttgctgct gctggccttc
     1201 tgctggtggc cggcagcagc cagcgccatt gggtggctca cggcgcaaat gctggttgcg
     1261 ctcaatctat tcattcaatg ggttaatgga ttgcccttca ctaccctgtc gcatatccag
     1321 atctcactac ttcaagcggc gctcctgctg ctgctcatac tcctgctggc ctggtgggga
     1381 ctgcggcgct acccgccggc gctggtagca ggtctctctt cactggtctt gtttgtggcc
     1441 atgcaaacct ggcgggtgta ccacgatagc aggcagcacc tgttggtggt atacaacatt
     1501 ccccaataca ccggcatcga ttacctgcag ggcaggcaga gcacttttgt gggcgataca
     1561 gctattgcac tgccggggtt cctgcagaat tttcacgtgc tcccttcccg tattctcctg
     1621 caatcaaagc cacaccggca gttgcttttg caaagcaaaa ccaacacgga acttaccatt
     1681 ggccaacaac gatggctgat actccgaagc cagattgatt accgaaggag caaggaggta
     1741 caggcggatg tgctgcttat cagtggcaac ccacccggca atcctgcccg ggtattatcg
     1801 gtgatcaaac ccaggcagat cataatcgac ggcagcaaca gcagcggccg cattgcccgg
     1861 tggaaaagcg ctgccgatag cctacatttg cgcctccatt cggtgcccga ccaaggggca
     1921 tatgtggtac acctgcccgc tttcgggccg gggcatccct gaggatggaa cctcttcaaa
     1981 aacagcaatc gcaaccaact tcaaacatca tgaacaagca gatcaggcgt gctttgattt
     2041 ccgtttttta caaagacggg ctggaaaccc ttgtacctac ccttcatcag caaggcattg
     2101 aaatagtgag caccggcggc actcagggct ttattgaaaa actcggcatc cccgtggtgc
     2161 cggtggaaaa cctcaccagc taccccagca tattgggtgg ccgcgtaaaa accctgcatc
     2221 ccgtagtgtt tggcggtatc ctgggcaagc gggccgacgc cgttcacctg caggaaatgg
     2281 ccgaatacaa gatcccggaa atcgacctgg tgatcgtaga cctgtatcct ttcgaggaaa
     2341 ccgttgccaa tacttctgaa gaatcggcca tcattgagaa aatagacatt ggcggcacca
     2401 gcatgatcag ggctgcggcc aaaaatttca gcgacctggt ggtaatctcc agcaaggacg
     2461 actatgatgt gctgaacgaa atgctcatcc ggcaaaacgg cagcaccacg ctggaacaac
     2521 gccgtgtttt tgctgccaaa gcatttgaag tggtgaagaa atatgacatc gccatcagcg
     2581 attatttcct gggcaccacc cccgacctgg gcattcgcaa aaccctgcgc tatggcgaaa
     2641 acccgcacca gtcggccact ttcgatggca acctgaacga gttgtttgac caggtgaacg
     2701 gcaaggaact gagctacaac aacctggtgg atgtagacgc tgccatgcag ctcatccgtg
     2761 aatttgaggc cggccagtcc aaaacatttg ccatcatcaa gcacaccaac gtgtgtggca
     2821 tcagccagcg ccccacggtg aacgaagcct gggatgccgc attggccggt gacccggaaa
     2881 gtgcatttgg cggcgtactg gtgtgcaatg gcagtatcga cctggccact gccgatgcca
     2941 tcaatgaaat tttctttgaa gtgctgatcg caccggcttt tgatgccgat gcgctagcgg
     3001 tgctgaaaag caagaagaac cgcatcctgc tgcagctgaa agcacagccg gcatccatca
     3061 cccaataccg gtcgttgctc aacggggtgc tcagccagaa caacgatatt ggcaactaca
     3121 ccgaatggaa agaagtgggt gcccgcgaaa ccactgcggc cgaaaaagag gaactggcct
     3181 ttgccaacct ggtgtgcaag cacctcaaga gcaatgccat tgccctggtg aaaaacggcc
     3241 agctggtggg taagggctgc gggcaaacca gccgcatcga tgcccttcgc cacgccatcg
     3301 aaaaagccaa gcagttcaac ttcgacctgc aaggcgccgt attggccagc gatgccttct
     3361 tccccttcga tgattgtgtg aagattgccc acgaagctgg tatccaggcc tttatacagc
     3421 ccggcggcag catccgcgat aa
//
LOCUS       DATIQF010000021         3076 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_198081,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000021 DATIQF010000000
VERSION     DATIQF010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3076
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198081"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..287)
                     /locus_tag="VLL95_00270"
     CDS             complement(<1..287)
                     /locus_tag="VLL95_00270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37321.1"
                     /translation="MKVAKLLLAAAIAAPSLFLTSCEKQIDVQAETIDRSATSSLARP
                     VPATFIPIEAADESGWNMSFFANGFNCGTGIIQRLDGTKWVDVTAELPIAP"
     gene            complement(516..587)
                     /locus_tag="VLL95_00275"
     tRNA            complement(516..587)
                     /locus_tag="VLL95_00275"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(552..554),aa:Arg,seq:cct)
     gene            complement(587..958)
                     /locus_tag="VLL95_00280"
     CDS             complement(587..958)
                     /locus_tag="VLL95_00280"
                     /inference="COORDINATES: protein motif:HMM:NF013691.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HSR37322.1"
                     /translation="MSSPLQFHQFSYFRRRIGCVVQWIPARLNGVRAGNGSFLKNRAM
                     YYAYVIESLADASYHYKGHCADLEKRLQEHNQGKTTSNKAYAPFKVVYSEAFNLREEA
                     IKREKYLKTAAGRRFLKKVLQ"
     gene            952..1428
                     /locus_tag="VLL95_00285"
     CDS             952..1428
                     /locus_tag="VLL95_00285"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSR37323.1"
                     /translation="MTYIVIPNYYRLMKVLFILLCLGWLVASSPAAAQQTRINHIAFT
                     VKDLGKSSRFYRQVLQLDTIPNPFNDAIHLWLNIGGGASLHLIQGTRIPVSIKDTHIC
                     FSVSSVEALAEKLSRAGIAFESWTGEKGQWTNRADGVKQIYLQDPDGYWLEVNDQQ"
     gene            1478..2137
                     /locus_tag="VLL95_00290"
     CDS             1478..2137
                     /locus_tag="VLL95_00290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37324.1"
                     /translation="MKFYNWLLRYRFWLGLVALALAIGVNIYAGFWPSFILYLLAVVA
                     IASHFFIGPMRLIQEHIENGDMEGAEKVLNMIWYPNLLYKPIRSAYYTLKGQMAMMRQ
                     DFKGAEEHMKKSEQLGMPMAEAEGANKLQLGMLAMQRGDYKQGENYIRAAIRAGIPDA
                     DGAAMAYLQMCQIYMQKGDMRSLRAAKEMFRKAKAEKPTNKDVVEQIKKLNSYISRIP
                     G"
     gene            complement(2236..2733)
                     /locus_tag="VLL95_00295"
     CDS             complement(2236..2733)
                     /locus_tag="VLL95_00295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HSR37325.1"
                     /translation="MSKVYSIKTVQKLPISIEQAWDFFSRPDNLKNITPSNLGFVILS
                     KHHGDRMYPGQIIEYKVSPVLGIPMYWMTEITHVEDFKYFVDEQRFGPYGLWHHQHHF
                     MPIEGGVEMTDIVHYKIPFWFLGDIAHTLFVRSQLQKIFTFRFQKTEALFGKWPGQEV
                     DVQFS"
     gene            2824..>3076
                     /locus_tag="VLL95_00300"
     CDS             2824..>3076
                     /locus_tag="VLL95_00300"
                     /inference="COORDINATES: protein motif:HMM:NF024603.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HSR37326.1"
                     /translation="MKQRTFSFLLLLPVAWMLLLTLFSPGCANIVPPVGGPRDSFPPV
                     LIKASPALNATRFDAKTITLQFDEYLQLDNLQQELIINPP"
BASE COUNT          798 a          732 c          763 g          783 t
ORIGIN      
        1 tttggagcaa ttggcaattc tgcggtcaca tctacccatt tggtaccatc caggcgctga
       61 atgatgccgg taccacaatt gaagccatta gcaaagaatg acatgttcca gccggattcg
      121 tcggcagcct caattgggat aaaggtggca ggcaccggcc tggccaaaga actggttgca
      181 gaacggtcga tagtttcagc ctgaacgtca atttgctttt cgcagctggt caggaatagg
      241 gagggtgcag caatagccgc agcaagtagg agttttgcta ctttcataac acattgttgg
      301 gttaaagaat gaagagagcc ctcttcgctt ttagggtaaa aagttcggag gagttgtagt
      361 ggtttactcc ccaaaaatag aaagaatttt gaatttcaaa gtttaaacat tgacatatgt
      421 caaattattt ttgcaataaa gttgcaacga ggggtggtgt ttgcgggaaa aggggacaaa
      481 aaaagcgaag caaatatttg cttcgccgta ggtagtagcc gcgctaggaa tcgaacctag
      541 atctaaagtt taggaaactt ccattctatc cattgaacta cgcagcctat tgaagaactt
      601 ttttcaaaaa cctcctgccc gcggcagttt tcaggtactt ttctctttta attgcttctt
      661 cccgcaaatt aaacgcttcg gaataaacaa ctttaaatgg cgcatacgct ttgtttgaag
      721 tagtctttcc ctggttgtgt tcttggagtc gtttctccag atccgcacaa tgccccttgt
      781 aatggtaaga agcatcagcc aggctttcaa ttacataagc ataatacata gccctgtttt
      841 ttaggaaact tccattcccc gcccgaacgc cgttcaggcg ggcgggtatc cattgaacta
      901 cgcagccaat acggcggcga aaataggaga attggtgaaa ttggagtggg gatgacatac
      961 attgtaattc ctaattatta ccgcctcatg aaagtgctgt tcattttact gtgtttgggc
     1021 tggctggtcg cgtcttcgcc tgccgccgcc cagcaaaccc gcatcaacca catcgccttt
     1081 acagtgaaag accttggcaa aagcagccgg ttttaccgcc aggtgttaca gttggatacc
     1141 attcccaacc ccttcaacga cgccattcat ctttggctga atattggcgg cggggcttcc
     1201 ctgcatttga tacagggcac ccgtattccg gttagcataa aggacaccca catttgtttc
     1261 tccgtttcct ctgtggaagc tttggctgaa aaactgtcga gagcagggat cgcatttgaa
     1321 agctggaccg gcgaaaaggg gcagtggacc aaccgggccg atggcgtaaa acagatctac
     1381 ctgcaagacc ccgacggata ctggctggaa gttaacgatc agcaatgacc caagtgaagg
     1441 gcaacctgct atctttgcca gcccaaaaaa taagttcatg aagttttaca attggctgct
     1501 gcggtatcgt ttctggttgg gattggtggc gctggcactg gctattggtg taaatattta
     1561 cgctggattc tggccttctt tcattttata cctgttggca gtggtggcca ttgccagtca
     1621 tttttttatt ggccccatgc gtcttattca ggagcatatt gaaaatgggg acatggaagg
     1681 cgcagaaaag gtgctgaaca tgatctggta tcccaacctg ttgtacaagc ccattcgcag
     1741 tgcctactat acgctcaaag gccagatggc catgatgcgc caggatttca aaggcgcgga
     1801 agagcacatg aaaaaaagcg agcagctcgg tatgcccatg gccgaggcgg aaggcgccaa
     1861 caaactgcag ttgggcatgc tggccatgca gcgtggcgat tacaagcaag gagagaacta
     1921 tatccgggca gccatccgtg ccgggattcc agatgccgat ggagcagcca tggcctacct
     1981 gcaaatgtgc cagatctaca tgcagaaggg tgacatgcgc agcttgcggg ccgccaagga
     2041 aatgttccgc aaagccaaag cagagaagcc taccaacaaa gatgtagtgg agcaaatcaa
     2101 aaaactcaac agctatatca gccgtatccc gggttagtgg agataagaag taataggaaa
     2161 agggtgcgaa gtttccggct tcgcaccctt ttttcattag gtatattgac caacaagagc
     2221 attgggttca catgatcagg aaaattgcac atccacctcc tggccgggcc atttgccaaa
     2281 cagggcttcg gttttttgaa agcggaaagt gaagatcttc tggagttggc tgcgtacaaa
     2341 taaggtatgg gcaatgtctc ccaaaaacca gaaggggatc ttgtagtgca cgatgtccgt
     2401 catttccacg cccccctcaa taggcatgaa gtgatgctgg tgatgccaaa gtccgtaagg
     2461 gccaaaccgc tgctcatcca caaagtattt gaagtcttcc acatgggtga tctcagtcat
     2521 ccagtacatc ggaatgccca gcacaggact cactttgtac tcaatgatct ggccgggata
     2581 catgcggtcg ccatgatgtt tgctgaggat cacaaatccc aggttggaag gggtaatgtt
     2641 cttgagatta tcgggccggc tgaaaaaatc ccatgcctgt tctatcgaaa tgggaagctt
     2701 ctgcaccgtt ttgatggaat aaacttttga catgcttcat ttacaaggaa agggcttttt
     2761 ggtttgatgt gccgcttctt ttcacatttt acctcggtgc cctatgctat gtttgcaaac
     2821 ctgatgaagc aaagaacctt ttcttttctg ctcctactgc ctgtagcctg gatgctgttg
     2881 ctcaccttgt tcagccccgg ctgtgccaac attgtgcccc cggtgggcgg accccgggat
     2941 tcttttcccc ccgtgctcat caaagcatcg ccggcgctga atgccacccg cttcgatgcc
     3001 aaaaccatta cgctgcagtt tgatgaatac ctgcaactgg acaacctgca gcaggaactc
     3061 atcatcaatc cgccct
//
LOCUS       DATIQF010000022         1864 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_91657, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000022 DATIQF010000000
VERSION     DATIQF010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1864
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91657"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(56..430)
                     /locus_tag="VLL95_00305"
     CDS             complement(56..430)
                     /locus_tag="VLL95_00305"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013391.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HSR37327.1"
                     /translation="MRRFLLRVQYALQGWASFFRHETHGQVQAAIAVLVLLAGLFFGI
                     SRTEWMAVLFCIALVLSLEMLNTAVEKLADQTHPERHPQIGLVKDVAAGAVLWAAVLS
                     VVIGAIVFWPYLAQWLSLTTTG"
     gene            complement(998..>1864)
                     /gene="creD"
                     /locus_tag="VLL95_00310"
     CDS             complement(998..>1864)
                     /gene="creD"
                     /locus_tag="VLL95_00310"
                     /inference="COORDINATES: protein motif:HMM:NF008712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein CreD"
                     /protein_id="HSR37328.1"
                     /translation="ISDTRGISTQVAANWNGQPLAFDAGVPAGGLASMGLSQQVPINA
                     NELDRPVSFSIPLQLKGSESLMLLPLGKTTEWQLQSPWPSPSFTGKFLPTFTSDASGF
                     KANWKVLHFNRDFPQVWKGETFKADAYGFGVSLLQPADHYAKTMRSVKYAILFIGLMF
                     GFFFLLEILLGYRVHPVQYLLIGIALVVFYCLLLSIGEVLTFNISYALATLATVALIT
                     AYCRHLFGTLKNALLIGGFLAGLYGFIFVLIQLEDTALLVGSIGLFVLLALAMQLSRR
                     ITWYETPNKLEE"
BASE COUNT          466 a          499 c          517 g          382 t
ORIGIN      
        1 ccgtcgtacc gggcagtgct ggtgcagcag gcggcccaaa aactccaact ggacatcagc
       61 ccgtggtggt aagagacagc cattgggcga ggtaaggcca gaacacgatg gcgccgatga
      121 ccacgctgag gacagccgcc cacaacacgg cacccgccgc cacgtctttc accaacccga
      181 tttgcggatg tctttccggg tgcgtctggt cggcgagttt ttctacagcc gtgttcagca
      241 tttccaacga cagtaccagt gcgatgcaaa acagcacggc catccattca gtacggctga
      301 tgccaaagaa aagccctgcc agcagcacca acactgcgat ggcagcctgt acctggccat
      361 gggtttcgtg ccggaaaaag gaagcccatc cttgcaaggc atattgtaca cgcaatagga
      421 atcgacgcat ggctgcaaag atgggtaatc ctcgtggatc tgttggccag tggttcacga
      481 ccccgcagcc aattagttta cgtatctaaa aatcagagcc atgatgagct caaagcatcc
      541 tatgatcatg tttaataatc gccaacccaa agtattgtac ttttttgctt gcccgaaaaa
      601 gtaccacggc aaaatgggtc aggccaaaga ctcgtttctg ggtagcgccg ggtccctttc
      661 aggagaccct gctgggacta gaagtattgt acttttttgc ttgcccaaaa aagtaccacg
      721 gcaagatggg tcaggccaaa gactcgtttc tgggtagcgc cgggtccctt tcaggagacc
      781 cggctgggac tagaagtatt gtactttttt gcttgcccaa aaaagtacca aaaaagggca
      841 cccgagatcg atgacatccc gatctcgggt gggtacccgc gccatggcgg ggcaggctct
      901 gattaagcta ttgtgctact gtagtgccag gcattttttc cctgatatcg ttcagcacct
      961 gcgagaaccc tgattacggg atcggcacca gctcaaatta ctcctccaat ttgtttgggg
     1021 tttcgtacca ggtgatgcgg cggctcaatt gcatggccag tgccagcaat acaaacaacc
     1081 cgatgctgcc taccagcagg gccgtatcct ccagctgaat gagcacaaag atgaacccgt
     1141 acaagccagc gaggaatccg ccgatgagca acgcgttttt cagggtgccg aacaaatgcc
     1201 tgcaatacgc agtaatgagg gccacggtag caagggtggc caaggcataa gaaatgttga
     1261 aggtcaaaac ttcgccaatg ctgagcagca ggcaatagaa gaccaccagg gcaatgccaa
     1321 tgagcaggta ttgcacgggg tgcacccggt atcccaacaa gatctcgagc aggaaaaaga
     1381 acccgaacat caggccgatg aacaggatgg cgtatttgac actgcgcatg gtcttggcat
     1441 aatgatcggc cggctgcagc aggctgaccc caaacccata ggcatcggcc ttgaaggttt
     1501 cgcctttcca tacctgcgga aaatcgcggt tgaagtggag caccttccag ttggctttga
     1561 agcctgacgc atcggaagta aaagtgggca ggaatttgcc ggtaaagctg ggcgagggcc
     1621 agggcgattg caactgccat tcggtggttt tgcccaatgg cagcaacatc agcgattcgg
     1681 agcctttcaa ttgcagggga atggaaaacg ataccggccg gtcgagctca tttgcattga
     1741 tcggcacctg ctgactgagg cccatgctgg ctagaccacc ggcgggtacg ccggcatcaa
     1801 aggcaagcgg ctggccgttc cagttggccg ccacctgtgt gctgatgccg cgggtatcgc
     1861 tgat
//
LOCUS       DATIQF010000023         3380 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_472, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000023 DATIQF010000000
VERSION     DATIQF010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3380
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_472"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..368
                     /locus_tag="VLL95_00315"
     CDS             <1..368
                     /locus_tag="VLL95_00315"
                     /inference="COORDINATES: protein motif:HMM:NF014874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HSR37329.1"
                     /translation="EQVITVVGCGGDRDRTKRPLMAAVACEYSHKAILTSDNPRTEDP
                     AAILNDMQQDMKSEHKRKCLVIADRREAIKTAVMMANAGDIILVAGKGHEKYQEINGV
                     KHHFDDKEELIKQFTELNK"
     gene            397..1692
                     /gene="mraY"
                     /locus_tag="VLL95_00320"
     CDS             397..1692
                     /gene="mraY"
                     /locus_tag="VLL95_00320"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HSR37330.1"
                     /translation="MLYYFFIWLNNEFDLAGAGLFQFITFRVAMAVILSLVVSAVFGK
                     AIIRRLQRLQIGEAVRELGLPGEVDKANTPTMGGFIILLAIIIPTLLFARIENIYIIL
                     MLLVTIWCGMIGFIDDYLKLRAKRIAKRKGIAYKKADADGLAGKFKIAGQIGLGLIVG
                     ATLYFNKSVVVEREVIGPRHSVVLQSKERLVGESVKVIDGEVHRYVKVQTPITTIPFV
                     KGHEFNYARLLPKSMEDFTYIVYILIVIFIITAVSNGANITDGLDGLATGVSAAIGAM
                     LGLFAYTSGNIRFAEYLNIMYIPNLGELSIFIGAFIGACVGFLWYNAYPAQVFMGDTG
                     SLALGGIIASLAIIVRKELLIPIFCGVFLVENLSVIMQVSYFKYTKKKYGEGRRIFLM
                     SPLHHHYQKLGYHESKIAVRFWIITLILAIFSIITLKMR"
     gene            1699..3039
                     /gene="murD"
                     /locus_tag="VLL95_00325"
     CDS             1699..3039
                     /gene="murD"
                     /locus_tag="VLL95_00325"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HSR37331.1"
                     /translation="MSKQLIILGAGESGTGAAILAKAKGYDVFVSDGSPIAKPFKAEL
                     DALGVPYEEGSHNMDRILAADEVVKSPGIPEKAPVMKAIREKGIPVISEVEFAYRYMN
                     NSRMVAITGSNGKTTTTALLYHICRTGELDCALVGNIGFSVARQVAVDPKPWYIAEIS
                     SFQLDDIKSFRPHVAILTNITEDHLDRYNYEFKNYINAKFRIIENQQADDYFIYCEDD
                     EVTATHLNKFRNQTNLLPFTMKKEVRQGAYIKDEEMLIKVKEQEMRMSIHDFALKGKH
                     NQYNTMAAGIAATVLDIRKDKIREAIQTFESLEHRMESVATIRGVEYINDSKATNINS
                     TWYALESMTKPTVLILGGVDKGNDYSVIEEMVTEKVKAIICLGVDNAKIHSSFEGKVP
                     VITDAGSAKEAVTKAYQISEKGDVVLLSPACASFDLFKNYEDRGKQFKEAVKEL"
     gene            3040..>3380
                     /locus_tag="VLL95_00330"
     CDS             3040..>3380
                     /locus_tag="VLL95_00330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37332.1"
                     /translation="MGAWQNILNEFNIGAETTEWNVLALTGKTRGDRVIWSIVAVLVV
                     ISLLAVYSSTGSLAYKQNKGNTEYYLFRQTAFIVIGVGIIYFVHLLNYSIFSKVALWL
                     YLASIPLLLYTL"
BASE COUNT          914 a          819 c          858 g          789 t
ORIGIN      
        1 atgagcaggt gatcaccgtg gtaggctgcg gtggcgacag ggatagaacc aaacgtccgc
       61 tgatggctgc tgttgcctgc gaatacagcc acaaggccat tctcaccagc gacaatccgc
      121 gtacagaaga tcccgctgcc atcctgaatg atatgcagca ggacatgaag agcgaacaca
      181 agcgcaagtg cctggtgata gccgaccgaa gggaagccat taagacagcg gtgatgatgg
      241 ccaatgcagg tgacatcatc ctggtggcag gaaagggtca cgagaagtac caggagatca
      301 acggtgtaaa acaccacttc gacgacaagg aagaattgat aaagcaattc actgaactca
      361 acaaatgatc atcagtaact atctataaac taacccatgc tgtactactt ttttatctgg
      421 ctgaataacg agtttgacct ggcaggtgcc ggcttgtttc agttcatcac cttcagggtg
      481 gccatggcgg tgatcctgtc gctggtagta tcggctgtat ttggaaaagc catcattcgt
      541 cgtttgcagc gcctgcaaat tggtgaagcg gtacgcgaac tgggtttgcc cggtgaggta
      601 gacaaagcga atacgccaac catgggcggc ttcatcattt tgctggctat tatcataccc
      661 accttgttgt ttgccaggat cgagaatatc tacatcatcc tgatgttgtt ggtgaccatt
      721 tggtgcggca tgatcggttt tattgacgat tacctgaaac tgcgtgccaa gcgcattgcc
      781 aagcgcaaag gcattgccta caaaaaggct gatgcagacg gtttggccgg taagttcaaa
      841 attgccgggc aaattggcct gggattgata gtgggcgcca ccttgtattt caacaaatca
      901 gtggtggtag aacgtgaagt gatcggaccc aggcattctg tagtactgca gtcaaaagaa
      961 cgactggtgg gagaatctgt caaggtgatt gatggcgaag tacatcgcta tgtaaaagtg
     1021 caaacgccca tcaccaccat tccttttgtg aagggacatg aattcaacta tgcgaggttg
     1081 ctgcccaaga gcatggagga tttcacttac atcgtttaca tcctcatcgt catcttcatc
     1141 atcaccgctg tttccaacgg tgccaatatt accgatggtc tcgatggatt ggccacgggg
     1201 gtgtcggcag ccataggcgc catgctgggt ttgtttgctt ataccagtgg taacatacga
     1261 ttcgcggagt atctcaatat catgtacatc cccaacctgg gtgaactctc catattcatt
     1321 ggtgctttca ttggcgcttg tgtaggcttt ctctggtaca atgcctaccc cgcacaggtg
     1381 ttcatggggg ataccggcag cctggccctg ggcggcatca ttgcatcgct ggccatcatt
     1441 gtacggaagg aattgctgat acccattttc tgcggcgttt tcctggtaga aaacctcagc
     1501 gtgattatgc aggtgtctta tttcaagtac acgaaaaaga aatatgggga ggggcgaagg
     1561 atattcctca tgagtccctt gcaccatcac taccaaaaac tgggttacca cgaaagcaag
     1621 atcgcggttc gattctggat catcaccctc atactcgcca tcttctccat catcacactc
     1681 aaaatgcgtt aacagacttt gtcaaagcaa ctgatcatat taggcgcagg cgaaagcgga
     1741 actggtgcag ccattttggc gaaggccaag ggatacgacg tgttcgtttc tgatggcagc
     1801 cccatcgcca aaccgttcaa ggccgagctg gatgcattgg gggtgcctta cgaagaaggc
     1861 agccacaaca tggatcgcat cctggctgct gatgaagtgg tgaaaagccc cggcattcct
     1921 gaaaaggcac cggtcatgaa agccattcgt gaaaagggaa tacccgtgat cagcgaagtg
     1981 gagtttgcct accgctatat gaacaacagc cgcatggtag ccatcaccgg cagcaatggc
     2041 aaaaccacca ccactgcctt gctctaccac atttgccgca ccggcgaatt ggattgtgcg
     2101 ctggtgggca acatcggttt ttcggtagcc cggcaggtag ctgttgatcc caagccctgg
     2161 tacatcgccg agatcagcag tttccagctc gatgatatca aatcctttcg ccctcatgtg
     2221 gccatcctta ccaacatcac ggaagaccac ctcgatcgct acaactacga attcaagaac
     2281 tatataaacg ccaaattccg cattatcgaa aaccaacagg ccgatgacta tttcatctac
     2341 tgtgaagacg acgaagtaac tgctacccac ctgaataaat tccgtaacca aactaaccta
     2401 ttgccattta ccatgaaaaa agaagttcgc cagggcgcct acatcaaaga cgaggagatg
     2461 ctaatcaaag tgaaggaaca agaaatgcgc atgagcatcc atgacttcgc attaaaggga
     2521 aagcacaatc aatacaatac aatggctgcg gggatagctg ctacggtgct ggatatccgt
     2581 aaagacaaga tcagggaggc cattcaaact tttgaaagcc tggagcaccg catggagtcg
     2641 gtggctacca tcaggggggt ggaatacatc aacgacagca aggccaccaa catcaacagc
     2701 acctggtatg cattggaaag catgaccaaa cccacggtgc ttatcctggg tggcgtcgac
     2761 aaaggcaatg actattcagt gattgaagaa atggtaacgg aaaaagtaaa agcgatcatc
     2821 tgccttggtg tagataacgc gaagatccat tcatcatttg aaggcaaggt gcctgtgatc
     2881 accgatgccg gcagtgcaaa ggaagcagtg acaaaggcct atcaaatttc tgaaaaggga
     2941 gatgtggtgt tgttgtcccc ggcttgcgcc agcttcgacc tgttcaagaa ttatgaagat
     3001 cgtggtaagc aattcaaaga agctgtaaaa gaactgtaat tgggcgcctg gcaaaacata
     3061 ttgaacgagt tcaacatcgg tgctgaaacc accgagtgga atgtgcttgc tctgaccggt
     3121 aagacccgcg gcgaccgggt gatctggagc atcgtggccg tgctggtagt catcagcctg
     3181 ctggctgtgt acagctctac cggctcactg gcgtacaagc aaaacaaagg caacacggag
     3241 tactatctct tccgccaaac agccttcatt gtcattggcg tgggcattat ttacttcgtt
     3301 cacctgctca actacagcat tttcagcaaa gtggcattgt ggttgtacct ggcttccatt
     3361 ccgttgttgt tgtacacgct
//
LOCUS       DATIQF010000024         4774 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_243723,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000024 DATIQF010000000
VERSION     DATIQF010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4774
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243723"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(110..304)
                     /gene="secE"
                     /locus_tag="VLL95_00335"
     CDS             complement(110..304)
                     /gene="secE"
                     /locus_tag="VLL95_00335"
                     /inference="COORDINATES: protein motif:HMM:NF012793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HSR37333.1"
                     /translation="MNKIGTHFRESYRELIEKVTWPTWNQLQQSTVIVIVATLLITAM
                     VWVMDIASENLLKLIYSFFK"
     gene            complement(332..402)
                     /locus_tag="VLL95_00340"
     tRNA            complement(332..402)
                     /locus_tag="VLL95_00340"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(368..370),aa:Trp,seq:cca)
     gene            complement(487..1674)
                     /gene="tuf"
                     /locus_tag="VLL95_00345"
     CDS             complement(487..1674)
                     /gene="tuf"
                     /locus_tag="VLL95_00345"
                     /inference="COORDINATES: protein motif:HMM:TIGR00485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HSR37334.1"
                     /translation="MAKETFKREKPHVNVGTIGHVDHGKTTLTAAITTILANRGLAEK
                     KGYDEIDAAPEEKERGITINTAHVEYQTANRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVAATDGPMPQTKEHILLARQVGVPKIVVFMNKVDLVDDPELLELVEMEIRDLLSS
                     YGFDGDNTPIIKGSATGALAGEEKWLAAIDELMEAVDTYIPLPPRPVDQAFLMSVEDV
                     FSITGRGTVATGRIERGRIKVGEGVEIVGMMPEKLTSTVTGVEMFKKLLDEGEAGDNA
                     GLLLRGIEKKDIRRGMVICKPGSITPHTEFRGEVYVLSKEEGGRHTPFFNKYRPQFYF
                     RTTDVTGECSLPEGTEMVMPGDNVNLKVTLIQPIAMEKGLKFAIREGGRTVGAGQVTE
                     ILK"
     gene            complement(1743..1814)
                     /locus_tag="VLL95_00350"
     tRNA            complement(1743..1814)
                     /locus_tag="VLL95_00350"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1780..1782),aa:Thr,seq:ggt)
     gene            complement(1911..1983)
                     /locus_tag="VLL95_00355"
     tRNA            complement(1911..1983)
                     /locus_tag="VLL95_00355"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1948..1950),aa:Gly,seq:tcc)
     gene            complement(2028..2110)
                     /locus_tag="VLL95_00360"
     tRNA            complement(2028..2110)
                     /locus_tag="VLL95_00360"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2074..2076),aa:Tyr,seq:gta)
     gene            complement(2284..2356)
                     /locus_tag="VLL95_00365"
     tRNA            complement(2284..2356)
                     /locus_tag="VLL95_00365"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2321..2323),aa:Thr,seq:tgt)
     gene            complement(2711..3007)
                     /gene="raiA"
                     /locus_tag="VLL95_00370"
     CDS             complement(2711..3007)
                     /gene="raiA"
                     /locus_tag="VLL95_00370"
                     /inference="COORDINATES: protein motif:HMM:NF014534.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_component: GO:0022626 - cytosolic ribosome [Evidence
                     IEA];
                     GO_function: GO:0045182 - translation regulator activity
                     [Evidence IEA];
                     GO_process: GO:0009386 - translational attenuation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HSR37335.1"
                     /translation="MTLNIQSVRFDADGKLTDHVKRKIEKLSTYHDRIIKVDVFLKLD
                     NVVHTIKDKVAEIKVTIPKNEIFVKSSSKSFEESFDDAFESVCTQIKRRKEKAA"
     gene            complement(3160..4056)
                     /locus_tag="VLL95_00375"
     CDS             complement(3160..4056)
                     /locus_tag="VLL95_00375"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HSR37336.1"
                     /translation="MDISTAIQKFTDYLKFEKRYSQHSIVAYGKDLEQFAKFLKSQFD
                     TQAVEEVNSGFVRSWMAIMKDEGMEARTINRKLSSLKSFFKFLRKHKVITQNPLATIS
                     GPKAGKKLPAFASETEIDRLLNDISFPDTWMGRTERLVLQLLYQTGMRRAELLQLKES
                     QVDAGQRVLRILGKGNKERLIPISAELLETVEGYMQAKRNELEVADCQVLLVNEKGKR
                     LTQNAVYNLVVKYLGQATSLSVRSPHVLRHTFATHLANAGADLNAIKELLGHSSLAAT
                     QVYTHNTIEKLKDIYKQAHPKA"
     gene            complement(4121..4318)
                     /gene="rpsU"
                     /locus_tag="VLL95_00380"
     CDS             complement(4121..4318)
                     /gene="rpsU"
                     /locus_tag="VLL95_00380"
                     /inference="COORDINATES: protein motif:HMM:NF013342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HSR37337.1"
                     /translation="MLIIDSKDCENIDKALKKYKKKFERAKVLTQLRERQSFTKPSVK
                     RRGEVLKAIYKQQIASGKIEA"
     gene            4425..>4774
                     /locus_tag="VLL95_00385"
     CDS             4425..>4774
                     /locus_tag="VLL95_00385"
                     /inference="COORDINATES: protein motif:HMM:NF012881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37338.1"
                     /translation="MFTGIIEQTGVVLDVFDTGTNRSFLIGSGLSGQLKVDQSVSHSG
                     VCLTVEKLEEGSHQVTAIAETLSKTNLGQWQKGRIVNLERCVPMNGRLDGHLVQGHVD
                     ATAICASVEDQNGS"
BASE COUNT         1203 a         1161 c         1095 g         1315 t
ORIGIN      
        1 tggcggttga tgtctttgtc aaggtattct tttacagaac gctccttgcc acttaccaca
       61 cgcagcacat accacttcgt ctcctgttgt tgtgtagttg gcgtttccat tatttgaaga
      121 aagaataaat gagtttcaaa agattctcag acgcgatatc cattacccac accatggcgg
      181 tgatcagcaa ggtagcaaca ataacaataa ccgttgattg ctgcagctga ttccaggtag
      241 gccaggtcac tttttcaata agctccctgt aactctcgcg gaaatgggtt ccaatcttgt
      301 tcataatcaa taattacttt tcgaaaagta gcacgggcac gcggattcga accacgatca
      361 aaggttttgg agacctctat tctaccgttg aactatgccc gtaaaaaaga agtacgaggg
      421 tggaagtccg aagttagaag tttcctacca cttcgtattt cgtacctcgt acttcgtact
      481 tggttattac ttgaggatct cagtaacctg gccggcacct acagtacgac caccttcgcg
      541 gatggcgaac ttcagacctt tttccatcgc aattggctgg atcagggtca ccttcaggtt
      601 tacgttatcg ccaggcatta ccatttcagt accttctggc agggagcact caccagttac
      661 gtcggtagta cggaaataga actgaggacg gtatttgttg aagaaaggag tgtgacgacc
      721 accttcttct ttgctcagta cgtatacttc gccacggaac tcagtgtgcg gagtaataga
      781 accgggcttg caaataacca taccacggcg gatatctttc ttttcaatac cgcggaggag
      841 cagaccggcg ttgtcaccag cttcaccttc gtcgagcagc tttttgaaca tttctacacc
      901 ggtaacggta gaagtcaact tctcaggcat catacctacg atttcaactc cttcacctac
      961 cttgatacgg ccacgctcaa tacgaccggt agctacagta ccacgaccag tgatagagaa
     1021 cacgtcttca acgctcatca ggaaagcctg atcaaccggg cggggaggca gcgggatgta
     1081 agtgtcaaca gcttccatca gttcgtcgat ggcagccagc cacttctctt caccagccag
     1141 ggcgccggtg gcagaaccct tgatgatagg agtattgtca ccgtcgaagc cataagagct
     1201 caacaggtca cggatttcca tttcaaccag ttcgagcaac tcggggtcgt caaccaggtc
     1261 aactttgttc atgaacacaa caatcttggg aacacctacc tggcgagcca gcagaatgtg
     1321 ttctttggtt tggggcatag gaccgtcggt agcagccaca accagaattg caccgtccat
     1381 ctgcgcagca ccagtaatca tgttcttcac atagtcagcg tgaccaggac agtcaacgtg
     1441 agcatagtga cgatttgctg tttggtactc aacgtgagcg gtgttgatgg tgataccacg
     1501 ttccttttct tcaggagcag catcaatttc atcgtaaccc tttttttctg ccaaacccct
     1561 gtttgcaagg atggtggtga tggcagcggt cagggtggtc ttaccgtggt caacgtggcc
     1621 gattgtacct acgttaacgt gaggtttttc cctcttaaag gtctcttttg ccatttttat
     1681 ttgtttttgt tgtggtttat tattctaaat gccggcgaac cggtaattaa aaacatcgaa
     1741 tgagccgttg atgagaattg aactcacgac ctcttcctta ccaaggaagt gctctaccac
     1801 tgagctacaa cggcttgtgt tccgctgaca gcctcagttg ctttgttgac agtgctagtc
     1861 cgctcctttt cctgtcatcc gtcaactttc cgtctgtcaa cctattgttg agcgggagac
     1921 gaggttcgaa cccgcgacct acagcttgga aggctgtcgc tctaccaact gagctactcc
     1981 cgcatgatac tcgagaattc gccttctcaa gcattttaaa agaactgtgg gcagtggtgg
     2041 attcgaacca ccgaagtcga aagacagcgg atttacagtc cgccccattt ggccgctctg
     2101 gaaactgccc gtttgtttaa ttgatgattg aggattcgtg atttgtgaat tggtattcag
     2161 caatcatcat tcagccatca ccaatggttt gagcctcttg tcagaatccc cgcctgactg
     2221 cagtcattcg ggcagggaac caacgaccta ctgagagcga atcagcaaat catcaactcg
     2281 atgagccact tgtcggaatc gaaccaacga cctactgatt acaaatcagt tgctctacca
     2341 gctgagctaa agtggcaatt ccaacaatga actgtgcttt acgtagcaag caccattcat
     2401 tcaacaaaga actaccccgt tttttcggga tggcaaaagt aaggctattt gatattcacc
     2461 aaaaaaaatt gaataaaagt ttttaactgg ctttcagcgc cctgctttta gccgcagaaa
     2521 atcctttacc gccaatggtt tgacactgtt tcctcgccca ctgctggcgg gcagcaacaa
     2581 atcaccggca ttgttaaaat ccccggcatc gcatgaatgg ccacttgccg caaatggtcg
     2641 ttttctcttc aattgtcccc aaaaaacgga agcccccgat ggtcgggggc ttccgtttgc
     2701 caaggccttg tcaggccgct ttttcttttc ttctttttat ttgggtgcaa acactttcaa
     2761 aagcatcgtc aaaagactcc tcaaaagatt tgctgcttga ttttacgaag atttcgtttt
     2821 taggaatggt tactttgatt tctgctacct tgtctttaat ggtgtgaact acattgtcca
     2881 atttcagaaa cacatcaact ttgattattc gatcgtgata ggtgctcaac ttttcgattt
     2941 ttcttttcac atggtcggtg agtttcccgt cggcgtcaaa ccgcactgat tgaatgttca
     3001 atgtcataat cgactcaatt ttaggtgaat aaataaagaa ctgaagtggg tagatttttc
     3061 aggatcacat aggcttcgaa tttgtatgga agatacagca atggatcaag aaatcatgtg
     3121 atgaatagca aattcactga tttttttgaa accttttgat caggcttttg gatgcgcctg
     3181 tttgtaaata tccttcagct tttcgatggt attatgcgta tacacctggg tggccgccag
     3241 gctgctgtgc cccagcaatt ccttgatggc attgagatcg gcgccggcgt tggcaagatg
     3301 cgtggcaaac gtatgacgca gcacatgcgg gctgcgtacc gacaatgaag ttgcctgtcc
     3361 aaggtatttc accacgaggt tgtacacggc attttgtgta agccgctttc ctttttcatt
     3421 gaccagcaaa acctggcaat cagccacttc caattcattg cgcttggcct gcatgtagcc
     3481 ctccaccgtt tccaggagtt cagcagaaat ggggatcagg cgctctttgt tgcctttgcc
     3541 taaaatgcgc agcacccgct gcccggcatc cacttgcgac tctttcaatt gcaacaattc
     3601 tgcccgccgc atgccggttt gataaagcaa ctgcaacacc agtcgttcag tgcgccccat
     3661 ccacgtgtcg ggaaacgaaa tatcattcag caaccggtcg atttcggttt cacttgcaaa
     3721 ggcaggcagt ttcttcccag cctttgggcc gctgatggta gccagcgggt tttgagtgat
     3781 cactttgtgc ttgcggagaa atttgaaaaa cgatttcagg gaagacaact tgcggttgat
     3841 ggtccgggct tccatccctt catctttcat gatcgccatc catgaacgga caaaaccgga
     3901 attgacctct tcaaccgctt gcgtatcgaa ttgtgatttc aagaatttgg caaactgctc
     3961 caaatctttg ccgtacgcca ctatcgaatg ttgagagtag cgcttttcaa atttgagata
     4021 gtcagtaaac ttctgaatgg cggtggaaat atccataaaa cagaatagcc ataaaggtag
     4081 accccttatg gctataaaag tcggtaaaac cggagtatga ttacgcctcg attttgccgc
     4141 tggcaatctg ctgcttgtag atggctttca gcacctcacc gcgacgctta accgaaggct
     4201 tggtaaagct ttggcgttca cgcaattggg ttaaaacctt ggcacgctca aatttctttt
     4261 tgtacttctt gagcgccttg tcaatgtttt cgcagtcttt agaatcaatg attaacatgg
     4321 ttatataccc cctttggtga attttgaggc gcaaaaatag gagattttca tttccaacca
     4381 accaattgcc gcaattttgt tgttaaagca acctttagga gatcatgttt acaggaataa
     4441 tagagcaaac cggcgtggta ttggatgttt tcgacacggg caccaatcgc agttttctga
     4501 tcggcagtgg tttgtcgggc cagttgaaag tggaccagag cgtgagccac agcggcgtat
     4561 gcctcacggt ggaaaagctg gaagaaggta gtcaccaggt gactgccatt gccgaaacct
     4621 tgtcaaaaac caacctgggc caatggcaaa aaggcagaat tgtaaacctg gaacgttgtg
     4681 tacccatgaa cggccgcctg gatggccacc tcgtacaagg gcatgtagat gccactgcta
     4741 tctgtgccag cgtggaagac caaaacggga gttg
//
LOCUS       DATIQF010000025         3117 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_15666, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000025 DATIQF010000000
VERSION     DATIQF010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3117
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15666"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..519)
                     /locus_tag="VLL95_00390"
     CDS             complement(<1..519)
                     /locus_tag="VLL95_00390"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HSR37339.1"
                     /translation="MQVPVSTYPLDIAAAAHRLRNVVRRTPLQYSHTLSKRYQANVYL
                     KREDLQIVRSYKLRGAYNMMSQLPQEQLAHGVVCASAGNHAQGFAYSCSQLGVKGTIF
                     MPVITPRQKVNQTKMFGGDNIDVVLTGDTFDDCAAAAKQFTLERHMTFIPPFDDYRII
                     EGQGTVAKEILED"
     gene            complement(614..1678)
                     /gene="ilvC"
                     /locus_tag="VLL95_00395"
     CDS             complement(614..1678)
                     /gene="ilvC"
                     /locus_tag="VLL95_00395"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: protein motif:HMM:TIGR00465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004455 - ketol-acid reductoisomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HSR37340.1"
                     /translation="MAKLNLGGVEENVVTREEFPLAKAQEVLKNETIAVIGYGVQGPG
                     QALNQRDNGINVIVGQRKNSKSWDKAVRDGFVPGETLFEIEEALERGTIICYLLSDAA
                     QIELWPTVKKHLTPGKALYFSHGFGITFNEQTGIIPPADVDVFLVAPKGSGTSLRRMF
                     LQGRGLNSSFAIFQDATGKARDRVIALGIAVGSGYLFETDFRKEVFSDLTGERGTLMG
                     AIQGIFAAQYQVLRDRGHSPSEAFNETVEELTQSLMPLVAENGMDWMYANCSTTAQRG
                     ALDWWKKFRDATLPVFNELYDSVATGKESQRSIDSNSQTDYREKLDAELAELRNSEMW
                     QAGKTVRSLRPENQPAAVEA"
     gene            complement(1848..2438)
                     /gene="ilvN"
                     /locus_tag="VLL95_00400"
     CDS             complement(1848..2438)
                     /gene="ilvN"
                     /locus_tag="VLL95_00400"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005948 - acetolactate synthase complex
                     [Evidence IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HSR37341.1"
                     /translation="MQKQEYTITVYTENQVGLLNRIAIIFSRRKINIESLNTSPSEVD
                     SVHRFTIVINEVEEVVRKLCRQIEKQVDVLKAYYNTNDEIVWQELAMYKVPTDIIQEE
                     VKVERLLSQHGAKAVVIRKDYTVFEVSGHREETDNLIQVLEPYGLIEFVRSARVAIIK
                     NSDGFHNKLKEFEYREPGEHVVENEFLDKNEEVFSM"
     gene            complement(2522..>3117)
                     /locus_tag="VLL95_00405"
     CDS             complement(2522..>3117)
                     /locus_tag="VLL95_00405"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HSR37342.1"
                     /translation="TMGEVIKTLNDLTHGEAIVVTDVGQHQMVACRYAQMKHSKSNIT
                     SGGLGTMGFALPAAIGAKFGAPDRTVVAVIGDGGIQMTIQELGTIMQFKTDVKILILN
                     NSFLGMVRQWQELFHQHRYSFVNITSPDFVQVAKGYYIDGQSISERSELRAALQTMLN
                     HEGSYLLEVKVGKENNVFPMVPQGRGVAEIVLSKEEI"
BASE COUNT          640 a          805 c          787 g          885 t
ORIGIN      
        1 atcctccagg atttctttcg caacagttcc ctgtccttct atgatccggt agtcatcaaa
       61 aggggggatg aaagtcatgt ggcgttcaag ggtgaactgt ttggcagcag cggcacaatc
      121 gtcaaaagtg tcgccggtga gcaccacatc gatattgtcg ccaccaaaca ttttcgtctg
      181 gttcactttt tgccgcgggg tgatcacagg catgaagatg gttcctttca cacccagctg
      241 gctgcaactg taggcaaatc cctgcgcatg attgccggcg ctggcacaaa ccacgccatg
      301 ggccagttgt tcctgcggca gctggctcat catgttgtac gccccgcgaa gtttatagga
      361 tcgtacgatc tgcaggtctt cccgcttgag atacacattg gcctggtacc ttttgctaag
      421 ggtgtggctg tactgcagtg gggtgcgccg caccacgttt cggagtcggt gggccgccgc
      481 tgcaatgtca aggggatatg tgcttacagg tacttgcatg ttgaagagat aatgggggcc
      541 gccgctggag gtgaataaga atgcggcagc cgcccatata caggttggtt gttgtgatca
      601 gcagaagcca ttatcaggct tccacggcag caggctggtt ttccgggcgc aggctgcgaa
      661 cggttttacc ggcttgccac atttcgctgt tgcgcagttc ggccagttca gcgtccagct
      721 tctcgcggta gtcggtctgg ctgttgctgt caatagaacg ctggctttct tttccggtgg
      781 ctacgctgtc gtacaattcg ttgaaaacgg gaagggtagc gtcacggaat ttcttccacc
      841 agtcgagggc accacgctgc gcagtggtag aacagttggc gtacatccag tccataccgt
      901 tttcagccac cagcggcatc aggctctgcg tcagttcttc cacggtttca ttgaaggctt
      961 cagaaggaga gtggccacgg tcgcggagca cctggtattg cgcggcaaaa atgccctgga
     1021 tagcacccat caaagtgcca cgttcgccag tgagatcgct gaacacttcc ttgcggaaat
     1081 cggtttcaaa caaatagcca ctgcctacgg caatacccag tgcgatcaca cgatcacggg
     1141 ctttaccagt ggcatcctgg aagatggcga agctgctgtt gagaccacga ccctgcagga
     1201 acatgcgacg caaggaggtg ccggagccct tgggagctac caggaataca tccacatcgg
     1261 caggcggaat gatgccggtc tgctcgttga aagtgatgcc gaaaccatgg gagaaataca
     1321 gcgccttacc gggggtcaaa tgcttcttca cggtaggcca caattcaatc tgggccgcat
     1381 cgctcagcag gtagcaaatg atggtgccac gctccagcgc ttcttcaatt tcaaacaagg
     1441 tttcgccggg aacaaaaccg tcacgaacag ccttgtccca ggattttgaa tttttacgct
     1501 ggcccactat tacgttgatg ccattatcac gctggttcag cgcctggccg gggccttgaa
     1561 cgccatagcc aatgactgcg atggtttcgt ttttcaatac ctcctgcgct ttggccaggg
     1621 gaaattcttc gcgggtaaca acattttctt ctacgccgcc taaattgagt tttgccatgt
     1681 tatggttgtt ttttgttttt gtttttttgt ttgtagttgt ttgaagtttg gggtttgagg
     1741 tttgatgtct tcgatgcagc taaatcaaca gtattcgttc ttatttactt cttcccactt
     1801 cgtacttcgt atttcgtacc tcgtacttcg tatttcgtac ttgtctttta catcgagaat
     1861 acttcttcat tcttatccag gaattcattt tccaccacgt gttctcccgg ttcgcggtat
     1921 tcaaattcct tgagtttgtt gtggaagcca tcgctgtttt tgataatggc tacccgggca
     1981 ctgcgcacaa attcaataag accatagggc tccagcacct ggatcaggtt gtcggtttct
     2041 tcgcggtgac cgcttacttc aaaaacggtg tagtctttgc ggatcaccac tgccttggca
     2101 ccatgctggc tgaggagacg ctctactttc acttcttcct ggatgatgtc agtaggtact
     2161 ttgtacatcg ccagttcctg ccatacgatc tcgtcgttgg tgttgtaata ggccttcaac
     2221 acatctacct gcttttcgat ctggcggcag agtttgcgca ccacttcttc cacttcgttg
     2281 atcacaatgg tgaagcggtg aacactgtct acttctgaag gcgaagtatt caaactttca
     2341 atgttaattt tccttctcga gaaaatgatg gcgatgcggt tgagcaaacc cacctggttt
     2401 tctgtgtata ccgtgattgt atattcttgt ttctgcatac tttttgtttt gacccggaac
     2461 cgttattgct ttctatcccg gaagtattgc tcaatgagtg ttcttctctt accaactcct
     2521 tttaaatctc ttccttgctc aacacgatct ctgctacgcc tctgccttgt ggtaccatcg
     2581 ggaacacgtt gttctccttg cccactttca cttccagcag gtagctgcct tcgtggttga
     2641 gcatggtttg cagtgccgcc ctcagttcgc ttctttcgct gatgctttgg ccgtcgatgt
     2701 aatatccttt ggccacctgt acaaaatcgg ggctggtgat gtttacaaac gaatagcggt
     2761 gctggtgaaa gagttcctgc cactggcgca ccatgcccag gaaactgttg ttgaggatca
     2821 ggatcttcac atccgttttg aattgcatga tcgttcccaa ttcctgtatg gtcatttgaa
     2881 tgccgccatc gccaattacg gccactacgg ttctgtcggg ggcgccaaac ttggctccaa
     2941 tggcagccgg caaggcaaag cccatggtgc ccaggccacc gctggtgata ttgcttttgg
     3001 aatgcttcat ttgggcataa cggcaggcca ccatctggtg ctggcccaca tccgttacca
     3061 cgatggcttc gccatgtgtc agatcattca atgttttgat cacttcgccc atggtga
//
LOCUS       DATIQF010000026         2194 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_274178,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000026 DATIQF010000000
VERSION     DATIQF010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2194
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274178"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..594)
                     /locus_tag="VLL95_00410"
     CDS             complement(<1..594)
                     /locus_tag="VLL95_00410"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSR37343.1"
                     /translation="MQDAWRKRLAKTGLNAKQLAQALEKAGAAGIVASNWSNGFGVNK
                     IFSANTSKIPTVDVALEDYGLLYRLIESGKAPKLSVRTDSKDLGMAPTYNTIAELKGT
                     EKPNEYVMLSAHFDSWDGGTGATDNGTGTLVMLEAMRILKKVYPNPKRTIIVGHWGSE
                     EQGLNGSRAFVEDHPDIVNNLQALFNQDNGTGRVANIG"
     gene            complement(604..1152)
                     /locus_tag="VLL95_00415"
     CDS             complement(604..1152)
                     /locus_tag="VLL95_00415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37344.1"
                     /translation="MKHLLLTAVLFSAFLGNNLQAQNKDSLMAAAIVQEATSNSQLQI
                     LGHELIDGIGPRLVGSPKMQQAHDWAVAKYSSWGIAARNEKWGEWRSWERGITHIDMI
                     APWVKTLEGTQLAWSPSTGGKAVTGDCIIIPDVADSVAFQQWLPNVKGKFVLISMAQP
                     TGRPDYNWEEFALKESFEKMKK"
     gene            complement(1268..>2194)
                     /gene="purD"
                     /locus_tag="VLL95_00420"
     CDS             complement(1268..>2194)
                     /gene="purD"
                     /locus_tag="VLL95_00420"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HSR37345.1"
                     /translation="IPTAAYAEFTADNFEAGKAYLAAHALPIVLKADGLAAGKGVVIC
                     QTHDEAQQVFADMILNKQFGEASSRVVVEQFLSGIEISVFVLTDGKDYKIIGHAKDYK
                     RIGEGDTGLNTGGMGCVSPVPFANAAFMQKVEDRIIKPTINGLYSEGLVYKGFVFFGL
                     INVEGEPFVIEYNCRMGDPETEVVMPRLKSDLVEMLVKLSNDNLAACEAVIDEKAAAT
                     VMAVSAGYPGDYEKGKQMQLPGSLPQDVMLFHAGTKLDANGNLLTNGGRVITATALAT
                     TIQEAAASAKAAIEQVQFEGKYYRRDIGYEFE"
BASE COUNT          485 a          589 c          523 g          597 t
ORIGIN      
        1 accaatgttg gccacgcggc cagtgccatt atcctggtta aacaacgctt gcaagttgtt
       61 tacgatatcc ggatggtcct caacaaaagc acgggaacca ttgagacctt gctcttcact
      121 gccccaatgt cccactataa tggtacgctt aggattggga taaacttttt tcaaaatgcg
      181 catcgcttcc agcatcacca gcgtaccggt accattgtcg gtggcaccgg tgccaccatc
      241 ccagctatcg aagtgggcgc tcagcatcac atactcgttg ggtttttcag tgcctttcaa
      301 ttcggcaata gtattgtaag tgggtgccat gccgaggtct ttgctgtcgg tgcgcacact
      361 caacttcggt gccttgcccg attctatgag gcgatacaac aaaccgtaat cttcaagcgc
      421 cacatctact gtaggaattt tgcttgtgtt cgcactgaat attttgttga cgccaaagcc
      481 attgctccag ttggaagcta caataccagc ggcaccggcc ttctccaaag cctgggccag
      541 ttgtttggca ttgaggcctg ttttggccag tcttttgcgc cacgcatcct gcatggccgt
      601 tctttatttt ttcatttttt cgaacgactc cttcaaggca aattcttccc agttgtaatc
      661 ggggcggccg gttggctgtg ccatggatat gagcacaaac ttgcctttga cattcggcag
      721 ccattgctga aaggcaacag aatcggctac gtcaggaatg atgatacaat cgccggtaac
      781 cgctttgcca cctgtactgg ggctccatgc caattgggtg ccttccaggg tttttaccca
      841 gggagcaatc atatcgatgt gggtaatgcc acgctcccaa cttctccatt cgccccactt
      901 ttcattgcgg gctgcaatgc cccaactgga atattttgcc actgcccagt cgtgtgcctg
      961 ttgcattttg ggagagccca ccaatcgtgg tccaatgccg tctattaatt catgaccgag
     1021 gatttgcaat tgggaattgc tggtggcctc ttgtacgatg gcagcagcca tcagggagtc
     1081 tttgttttga gcctgcaggt tattgcccaa gaatgcggaa aacagcactg cagtcagcag
     1141 caggtgtttc atactggtga tggttatttt gaaataagac gatgctgaag aggatttcaa
     1201 gtagcaacaa cttggtacac agctaatgag tgaaggagat cgctacccag attggcacag
     1261 ccttgcatca ctcaaattcg tagccgatat cacggcgata atacttccct tcaaactgta
     1321 cttgttcaat agctgctttt gcggaggcag ccgcttcctg gatggtagtt gccagtgcag
     1381 tagccgtaat gacgcgaccg ccattcgtca acaagttccc gttggcatcg agtttggtgc
     1441 cggcatggaa aagcatcaca tcctgcggca atgagccggg caattgcatc tgttttcctt
     1501 tttcataatc gccggggtag cctgcgctta ccgccattac ggtagccgct gctttttcat
     1561 caatcaccgc ttcgcatgca gccaggttgt cgttgctcaa cttcaccagc atttccacga
     1621 ggtcgctttt caagcgtggc atcaccactt ccgtttccgg atcacccatg cggcagttgt
     1681 attctatcac aaaaggttct ccctccacat tgatgaggcc aaagaacacg aagcctttgt
     1741 atacgagtcc ttcgctgtac aagccattga tggttggctt gatgatgcga tcttctactt
     1801 tttgcatgaa tgcggcattg gcaaatggca ccgggcttac acaacccatg ccaccggtat
     1861 tcaacccggt atcgccttca cctatgcgtt tgtaatcttt ggcgtggcca atgatcttgt
     1921 aatcctttcc atcggtgagc acaaacacgc tgatctcgat gccgctcagg aattgctcta
     1981 ccaccaccct gctgctggcc tcgccaaact gtttgttcag gatcatgtcg gcaaatacct
     2041 gttgcgcttc atcatgtgtt tggcaaatga ccactccttt gccagcagcg aggccatcgg
     2101 ccttcaacac aatgggcagc gcatgcgcag ccaggtaggc tttgcctgct tcaaaattgt
     2161 ccgcggtgaa ttcagcataa gccgctgtgg gaat
//
LOCUS       DATIQF010000027         2074 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_258985,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000027 DATIQF010000000
VERSION     DATIQF010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258985"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..899)
                     /locus_tag="VLL95_00425"
     CDS             complement(<1..899)
                     /locus_tag="VLL95_00425"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR37346.1"
                     /translation="MSISSKGENKGIGFIIGASSAGTLIEWYDFYIFGMLATIISKQF
                     FPEDSGTSALLSTLAIFAAGFIVRPFGALVFGRLGDIIGRKHTFLLTLVLMGGSTFLI
                     GLVPGYSSIGWAAPILVLILRLIQGLALGGEYGGAATYVAEHAPANRRGFWTSWIQTT
                     ATLGLFLALGVIILVRQAQGVEAFSKEWGGWRIPFWISLALVIVSILIRVRMQESPLF
                     AKLKTEGKTSTNPLKESFGHKANFKMVLLALFGAVMGQGVIWYTGQFYAQNFIETVCK
                     IDFVQSRNIIIIAIALATPFFIV"
     gene            1085..>2074
                     /locus_tag="VLL95_00430"
     CDS             1085..>2074
                     /locus_tag="VLL95_00430"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HSR37347.1"
                     /translation="MLVPYQIRSFNQYKMAYEYSVSHPEEFWAGIADHFVWRKKWDKV
                     LDWNFKEPKVEWFQGGKLNITENCLDRHLAGLGDKPALIWEPNDPEDHHRVLTYKDLH
                     LKVMQFANVLKNNGVKKGDRVCIYMGMIPELAIAVLACARIGAIHSVIFGGFSAQSIA
                     DRIQDAQASCVITCDGANRGNKVIPLKSTIDDAMIGCPSVKRIIVCTHTRTPVSMIKG
                     RDVWWEDEVKKVETQGNPVCEAEEMDAEDVLFILYTSGSTGKPKGVVHTCGGYMVWAN
                     YTFVNVFQYQRGQIHFCTTDIGWITGHSYILYGPLSAGATTLMFEGIPTWPDAG"
BASE COUNT          549 a          486 c          531 g          508 t
ORIGIN      
        1 aagacaataa aaaatggcgt ggccaatgca atggctatga tgatgatgtt acgtgattgt
       61 acaaagtcta ttttacaaac cgtctcgatg aagttttgcg cataaaactg acccgtgtac
      121 caaatcacac cttgccccat cacggcacca aacaatgcca gcaataccat cttgaaattg
      181 gctttatgac caaagctttc ttttagcgga ttggtgctgg tttttccttc cgttttcaac
      241 ttggcaaata gtggcgattc ctgcatcctc acccgtatca gtatcgacac gatgaccaag
      301 gctaatgaaa tccagaatgg tatgcgccag ccaccccatt ctttgctgaa tgcttcaacg
      361 ccttgcgctt gcctgacgag gatgataacg cctaatgcca ggaacaatcc cagcgtggcg
      421 gtggtttgga tccaactggt ccaaaagccc ctgcggttag caggcgcatg ttctgccaca
      481 taggtggctg ctccgccata ttcgccccct aatgccaggc cttgaatgag gcgcaggatg
      541 agtaccagta tgggtgccgc ccaaccaata ctggaataac cgggcaccag gccaatgaga
      601 aaggtggagc ctcccatcag taccagcgtc agcaggaagg tatgcttgcg gccaattata
      661 tcgccaagcc tgccgaatac cagcgcacca aagggacgca caatgaagcc ggctgcgaat
      721 atggccaggg tgcttagcaa agcagaagtt ccgctgtcct cgggaaagaa ctgttttgaa
      781 ataatggtgg caagcatgcc gaatatgtag aaatcatacc actcgatgag tgtgcctgcc
      841 gatgaagcgc caatgataaa tccgatccct ttgttttctc ctttgctgct gatagacatg
      901 gccggtgcct ggttgtaatg aacaatgcag tatactgcct gaaattaagg attgcgtgaa
      961 taggataagt gatgctgaac cgctggcatc atttattcaa ttcttttatt gatttgggat
     1021 ggtggcgcca acaacctgcc ttccttacat tagcattcct ttacttcaac aaaagcttat
     1081 tgccatgtta gtgccttacc agatcagaag tttcaaccag tacaaaatgg cgtatgaata
     1141 cagcgtatcc catcccgaag aattttgggc gggcattgcc gaccattttg tgtggaggaa
     1201 aaagtgggac aaggttttgg attggaattt caaggaaccc aaagtagagt ggttccaggg
     1261 agggaagctg aacatcacgg agaattgcct cgatcgtcat ctggcaggct tgggcgataa
     1321 gcctgcattg atttgggagc ccaatgaccc ggaagaccat cacagagtgc tgacctacaa
     1381 agacctgcat ttgaaagtga tgcagtttgc caatgtgctg aagaacaatg gtgtcaaaaa
     1441 gggagaccgt gtttgcattt acatgggtat gatccccgag ctggccattg cagtattggc
     1501 ctgtgcccgg attggcgcca ttcactccgt aatattcggt ggcttcagtg cgcagagcat
     1561 tgccgatcgc attcaggatg cacaggcttc ctgtgtgatc acctgcgatg gtgccaacag
     1621 gggcaacaaa gtcattcccc tcaaaagcac cattgatgat gccatgattg gttgcccctc
     1681 ggtgaaacgc attattgtgt gtacgcatac ccgtaccccg gtaagcatga tcaaggggcg
     1741 tgatgtgtgg tgggaagacg aagtaaaaaa agtggagaca cagggtaatc cggtttgcga
     1801 agcggaagaa atggatgcag aagatgtctt gttcattttg tacaccagcg gcagtacagg
     1861 caagccaaaa ggagtggtgc atacttgtgg cggttacatg gtttgggcca actacacatt
     1921 tgtcaacgtg tttcaatacc agcgtggaca gattcatttt tgtacgacag atatcggctg
     1981 gattacaggg cacagttaca tcttgtacgg accactaagt gctggcgcta ccacactgat
     2041 gtttgaagga attcctacct ggcccgatgc cggc
//
LOCUS       DATIQF010000028         2729 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_122178,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000028 DATIQF010000000
VERSION     DATIQF010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2729
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122178"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..528
                     /locus_tag="VLL95_00435"
     CDS             <1..528
                     /locus_tag="VLL95_00435"
                     /inference="COORDINATES: protein motif:HMM:NF014186.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidC/Oxa1 family membrane protein insertase"
                     /protein_id="HSR37348.1"
                     /translation="GCVPALFQIPIFFALYSFFNSNIDLRGVPFLWASDLSSYDSIVD
                     FGFNVPFYGSHISLFTITACATSLLISVYSMATTPDTGNPMMKYMPYIFPFMMLFIFN
                     KLPSALTWYYTVSNVITLALQFVIQNYIINHDKILAEISANKAKPKKKTKWQERLEQM
                     QDAQKRMDDMKKKGK"
     gene            692..1333
                     /locus_tag="VLL95_00440"
     CDS             692..1333
                     /locus_tag="VLL95_00440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37349.1"
                     /translation="MKKRTFFTVLVLLGSILVAGAQKMLVEGIVEYKITVVNANDVPG
                     VADAFVGAAQTLQVKGYKSRTDFRSSLRNQVTVYDAQTGNGFVLRQMGNDKFLIMLDS
                     KTWKLYHKRFDGTTYTIGQEQKTIAGYTTTKAVGKMPDGSEITVYFAPDLGLMAKGYD
                     LAFANLPGLPLEYELKSGGVVLRYEATEVKQTMVNSSSFDMPKSGYKVLEYKQ"
     gene            complement(1363..1710)
                     /locus_tag="VLL95_00445"
     CDS             complement(1363..1710)
                     /locus_tag="VLL95_00445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37350.1"
                     /translation="MKRILHKKSLVKAAALTVLACLLFSQVEIFGAKGGGKDKKGYVL
                     RFSGFENRSSFQNKFLHQPGVFYKGSMNMAGGQQNGGSSIITFQKGNTIYLMPYKYKT
                     PLSRFKTPEKPNF"
     gene            1860..>2729
                     /locus_tag="VLL95_00450"
     CDS             1860..>2729
                     /locus_tag="VLL95_00450"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR37351.1"
                     /translation="MGNFSSRREREEMQELLKAYDNLKAGRSAPFLEEEDFERIINYF
                     DDHEDVPAALEAATIGLEHFPFAAQLMYRKADFLIAQQHFQEALDLLDTAALYDQTDI
                     SLPILRTDAYLALEAPEKAAQILEEALELFEGEERIELLFELADVYDDYEDFQKVFDC
                     LKLILEEDPNNEEALLKICFWADFTGRSEESIILHQWIIDEHPFNELAWFNLATAYQG
                     LKLYEKAIDAYEYALAIDEKFDIAYRNMGDAYIRLRRYKEAIECLEKVLELSRPEDVI
                     YEAIGHCYHKMENF"
BASE COUNT          715 a          672 c          700 g          642 t
ORIGIN      
        1 ggctgtgtgc cggccttgtt ccagatcccc atcttctttg cgctgtacag tttcttcaac
       61 agcaatatcg atctgcgggg cgtgcctttc ctgtgggcca gcgatttgag cagctatgac
      121 tccattgttg attttggatt caacgtgccg ttctacggtt cgcatatcag cctgttcacc
      181 atcacagcct gcgccaccag cttgctgatc tcggtgtaca gcatggccac tacgcccgat
      241 accggcaacc cgatgatgaa gtacatgcct tacatcttcc ccttcatgat gctgttcatc
      301 ttcaacaagc tgccttcggc gcttacctgg tactataccg tttccaacgt gattacgctg
      361 gcactgcagt tcgttatcca gaactatatc atcaaccatg ataagatcct ggctgaaata
      421 tccgccaaca aggcaaagcc taaaaagaag accaagtggc aggagcgttt ggagcaaatg
      481 caggacgccc aaaagcgcat ggacgacatg aagaaaaaag gtaaataatt ggatgtcaat
      541 aatttggaga aaaccccctg ctaatagatg cagggggctt ttttcatggc cacctgttaa
      601 atatcaaaat gggggtggtg gtttttgcct aatttgctgt cacaacaatc aaccctgtac
      661 gtataacagg tggctcatta aaccggcagc aatgaagaag agaacatttt ttaccgtttt
      721 ggtcctgctt ggttccatcc tggtggccgg cgcccaaaag atgttggtgg aaggcattgt
      781 ggaatacaag atcaccgtgg tgaatgccaa tgacgtgccc ggcgtagccg atgcctttgt
      841 aggggctgcc caaaccctgc aggtaaaggg gtacaagtca aggacggatt tcagaagttc
      901 gctgcgcaac caggtaacgg tgtacgacgc ccaaacgggc aacggttttg tgctgcgtca
      961 aatgggcaac gacaaattcc tgatcatgct ggacagcaag acctggaaac tgtaccacaa
     1021 gcggttcgac gggaccacct ataccattgg ccaggagcaa aagaccattg ccggctatac
     1081 gacaaccaag gccgttggaa aaatgcctga tggcagcgag atcacggtat attttgcccc
     1141 cgacctgggc ctgatggcca aaggatatga ccttgccttt gccaaccttc ccggcctgcc
     1201 actggagtat gaactgaaaa gcgggggcgt ggttttgcgc tacgaagcca cggaagtgaa
     1261 acaaaccatg gtaaattcca gcagtttcga catgccaaag tcggggtaca aagtgctgga
     1321 atacaagcaa taaaaaaagc cggggttacc ggcttttgct atttagaaat taggtttttc
     1381 tggtgtcttg aatctcgaca gcggcgtttt gtacttataa ggcatcaggt aaatggtgtt
     1441 gcctttttgg aaagtgatga tggaactgcc accattctgc tgtccgccgg ccatattcat
     1501 gctacccttg taaaacaccc cgggctggtg caggaatttg ttttgaaagc tggacctgtt
     1561 ttcgaaaccc gagaagcgca aaacatatcc tttcttgtcc ttgccgccac ccttggcgcc
     1621 aaagatttct acctgtgaaa agagcaggca agccagaacg gtaagcgctg cagcttttac
     1681 aagagacttt ttatggagga tacgtttcac ggcgcaaata tgggtaaaag ttattggaat
     1741 gccaattaac agaacgcttg accggcaaaa ttgttgtgag aaagtggata aaagctttat
     1801 tagcgtggta agtggtgcga acatgggttt gtagctttag aaaacttact aattcagcca
     1861 tgggtaactt ttcaagccgc cgggaaaggg aagaaatgca ggaattgttg aaagcctacg
     1921 acaacctgaa agccggccgg tcggccccct ttctggagga ggaagatttt gagcggataa
     1981 tcaattattt cgatgatcat gaagatgtgc cggcagccct ggaagccgct accattggct
     2041 tggaacattt cccctttgcc gcccagctca tgtaccgcaa ggcagacttc ctgattgccc
     2101 agcagcattt ccaggaggcg ctcgacctgc tggataccgc cgccctgtac gaccaaaccg
     2161 acatttcgct gccaatcttg cgcaccgatg cctacctggc cctggaagcc cccgaaaagg
     2221 ccgcccagat actggaagag gccctggaat tgtttgaagg ggaagaacgg atcgaactgt
     2281 tgtttgagct ggccgatgtg tacgatgatt acgaggattt ccagaaagtg ttcgattgcc
     2341 tgaagctgat cctggaggaa gaccccaaca acgaggaagc cttgctgaag atctgtttct
     2401 gggccgattt taccggtcgc agcgaagaaa gcatcatcct gcaccagtgg atcattgatg
     2461 aacatccctt caacgaactg gcctggttca acctggcgac agcctaccag ggcctgaagt
     2521 tgtacgaaaa ggcgatcgac gcctacgaat atgccctggc cattgatgaa aaattcgaca
     2581 ttgcctaccg caacatgggc gatgcctaca tcaggctgcg ccgctacaag gaagccattg
     2641 agtgcctgga aaaagtactg gagctcagcc gccccgaaga tgtgatctac gaggccattg
     2701 gccactgcta tcacaaaatg gagaacttt
//
LOCUS       DATIQF010000029         4199 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_259000,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000029 DATIQF010000000
VERSION     DATIQF010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4199
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259000"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1465
                     /gene="fusA"
                     /locus_tag="VLL95_00455"
     CDS             <1..1465
                     /gene="fusA"
                     /locus_tag="VLL95_00455"
                     /inference="COORDINATES: protein motif:HMM:TIGR00484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HSR37352.1"
                     /translation="AEYDYQLMEKFFDNPDSISEDEIHEAIRKATIDLSIVPMMCGSS
                     FKNKGVQTALDAVCRYLPSPVDIPPAPGVNPDTGEEVVRKADPKEPFAALAFKIMTDP
                     FVGRLAFFRCYSGKLDAGSYVKNMRSGKNERISRIMKMFANKQNPIEFIEAGDIGAAV
                     GFKEIKTGDTLCDEKFPVVLENMFIPEPVIAIAVEPKTQADVDKMGMAIAKLVEEDPT
                     LRVNTDEETGQTILRGMGELHLEIIVDRMRREFKVEVNQGAPMVAYKEAFTQTVQHRE
                     VLKKQSGGRGKFADIQFEIGPVDEEWQKENPDKHFQFVNDLFGGSIPKEFVGPIQKGF
                     ENSMGTGVLAAYPVVNMKVRVFDGSFHAVDSDGMSFELCARAGFREAGRKAKPVLLEP
                     IMKVEVITPDQYMGDVTGDLNRRRGMLEGMDSRNNAQVIKAKVPLSEMFGYVTQLRSL
                     SSGRATSTMEFSHYAPAPNNIAEEVIAKQKGKLKVEE"
     gene            1581..2243
                     /locus_tag="VLL95_00460"
     CDS             1581..2243
                     /locus_tag="VLL95_00460"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HSR37353.1"
                     /translation="MLPATEGLYYVEKSRRSIPEGLITPSAFLNSVHPLSAKAAKFID
                     SKAFFCSVPKGRHLLREGVTCPYMFLIVKGVMRAYILEGKTEITTWIVGEVDLVSSIS
                     SFFNQTASLENIQALEDCDLIGLSFQDLETAYEKYPEMNIAARKILQIIYRQAEERAY
                     LTRLTKASSRYAYFAKSNQALLSRVPLKYIASLLGMTLETLSRLRGAISRPPKEAQEK
                     TI"
     gene            2575..3297
                     /locus_tag="VLL95_00465"
     CDS             2575..3297
                     /locus_tag="VLL95_00465"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HSR37354.1"
                     /translation="MQIPHPDQLVVIDLETVAQYPSFEKVPPAWQQLWEEKTRWQWEP
                     DTTAADFYGERAGILAEFGKIVCISVGYFRQQEGKWQLRLKSFASADEKELLGQLLHV
                     IGQLVQAKKVRIWFAGHNIREFDIPYLCRRLLINGMELPAWLDFQSLKPWDVPLIDTL
                     QLWKFGDYKNYTSLNLLAACMGIQSPKDDMDGSMVNGVFWKENALERIVTYCQKDVVT
                     VAQLLLKFSGKPMLTEEQIITV"
     gene            complement(3365..>4199)
                     /gene="serA"
                     /locus_tag="VLL95_00470"
     CDS             complement(3365..>4199)
                     /gene="serA"
                     /locus_tag="VLL95_00470"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: protein motif:HMM:NF008759.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HSR37355.1"
                     /translation="SAHEGIWMKDASGSYELRGKTLGIVGYGNIGSQVSVLAEAMGLK
                     VIFYDVLTKLPLGNAEACKSLKELVGKADIVSLHVPEIQSTKNLISKQVIKQFKKGSI
                     LINYARGEVVDLDALAMALKAGDMAGAAIDVFPVEPEKNGDQFTSPLQGLSNVLLTPH
                     IGGSTMEAQENIGMDVSTKLLGYLEKGITYGNHTVPTLSLPTLEGAHRILHIHKNVPG
                     VLSEINTALSNARINILGQHLATNEHIGYVVLDVDKQLSKHAIKLLKDVKHTIRARIL
                     Y"
BASE COUNT         1055 a         1026 c         1029 g         1089 t
ORIGIN      
        1 agctgaatac gattaccagc tcatggagaa attcttcgac aatccggaca gcatcagcga
       61 agatgaaatt cacgaagcca tccgcaaggc taccatcgac ctgagcatcg tgcccatgat
      121 gtgcggttct tcattcaaga acaaaggcgt acaaactgca cttgatgccg tttgccgcta
      181 cctgccttct cccgttgaca ttccgccagc acctggtgtg aaccctgaca ccggcgagga
      241 agtagtacgc aaggccgatc ctaaagaacc ctttgcagcg ctggccttca agatcatgac
      301 cgatcctttc gtaggtcgcc tggctttctt ccgctgttac agcggcaagc ttgatgccgg
      361 cagctatgta aagaacatgc gcagcggcaa aaatgaacgc atcagccgta tcatgaaaat
      421 gtttgccaac aagcagaacc ccatcgaatt catcgaagcg ggtgatattg gtgccgctgt
      481 tggtttcaag gaaatcaaaa ccggtgatac gctttgtgac gaaaagttcc ctgtggtatt
      541 ggaaaacatg ttcattcctg agcctgtgat cgccattgcc gtggagccta agacccaggc
      601 tgacgttgac aaaatgggta tggccattgc caagctggtg gaagaagatc ctaccctccg
      661 tgtaaatacc gacgaagaaa ctggtcaaac catcctgcgt ggcatgggtg aactgcacct
      721 cgaaatcatc gttgatcgta tgcgtcgcga attcaaggtg gaagtgaacc agggtgcccc
      781 catggtggcc tataaagaag ccttcactca aactgtacag caccgcgaag tgctgaagaa
      841 gcagtcgggt ggtcgtggta agttcgccga tatccagttt gagatcggac ctgtggatga
      901 agaatggcaa aaggaaaatc ctgacaagca cttccagttt gtaaacgacc tctttggcgg
      961 tagcatcccc aaggaattcg taggacctat ccagaaaggt tttgaaaaca gcatgggtac
     1021 tggcgtattg gccgcttatc ctgttgtgaa catgaaggtt cgcgtatttg acggtagctt
     1081 ccacgcagtt gactctgatg gtatgtcgtt cgaattgtgt gcacgtgccg gtttccgcga
     1141 agcaggccgc aaagcaaagc ccgtgttgct tgagcctatc atgaaggtgg aagtaatcac
     1201 gcctgaccag tacatgggtg atgtaaccgg tgacctgaac cgccgccgcg gtatgctgga
     1261 aggcatggac agccgcaaca atgcccaggt gatcaaggcc aaagtaccac tgagcgaaat
     1321 gtttggttac gtaacccagc ttcgttcact gtcttctggc cgtgccacca gcaccatgga
     1381 attcagccat tacgctcctg ctcccaacaa cattgccgaa gaggtgattg ccaagcagaa
     1441 gggaaagctg aaggttgaag aataaggaaa gcagagccgt ggccaacacc ccggttcctg
     1501 atcatatcaa agccaccgct tgtgcggtgg cttttttgct ttagattcgt cgctctaacg
     1561 gctttgccaa aactgtagcc atgctgcctg caactgaggg actatactat gtggagaaat
     1621 caaggaggtc aattccggaa ggattgatca cgccttcagc attcctcaac agcgtgcatc
     1681 ctcttagtgc gaaagcagcc aaattcattg attcaaaagc atttttctgt tctgtaccca
     1741 aggggcgcca cctgctgcga gaaggtgtca catgccctta tatgttcctt atagtcaagg
     1801 gtgtcatgag ggcgtatatc ctggaaggga aaacagaaat cactacctgg atcgttgggg
     1861 aagttgacct ggtttcttcc atcagcagtt tcttcaacca aaccgcttcg ctggagaata
     1921 ttcaggcatt ggaggattgt gatttgattg gcctcagttt ccaggatctt gaaacggcct
     1981 atgagaagta cccggaaatg aatatcgctg cccgcaaaat tctccagatc atttaccggc
     2041 aggcagaaga aagggcttac ctgacccggc tgaccaaagc aagcagccgg tacgcctact
     2101 tcgccaagag caaccaggca ctgctttcgc gggttccttt aaagtacatc gcctcattgt
     2161 taggcatgac tttagagacg ctcagccgcc tccgcggtgc catttccaga cctcccaaag
     2221 aggcccagga aaaaacaatt tgacatttgt caaataaatt tcagttccaa aaagcctcaa
     2281 aaacgaggct tttttcgttt aagtgactgt aaatcaataa tttattcgat ttggttattc
     2341 ggggtccaaa atttgacatt tgtcaagttg ctcgcttggg ccttttttgt gagcaaacat
     2401 tgatgttact ttacatcagt tctgaagcaa acccctaaac tttacaaaca aagcgctcct
     2461 cctttcgacg gggcgctttt gtttttgttg cccttgtagc tatttgttcg gtaggtttcg
     2521 gtccattccc ccacgaggaa tagacctttt tccaattctt gattaattta ccgtatgcaa
     2581 attccacacc ccgaccaatt ggtagtaatt gacctcgaaa cggtcgctca gtatccatct
     2641 tttgaaaagg taccccctgc atggcagcaa ctttgggaag aaaaaacgcg ttggcaatgg
     2701 gaaccagaca ccaccgctgc tgatttctat ggcgaaagag ccggcatcct cgctgagttc
     2761 ggcaagatcg tatgcatcag tgtgggctat ttccgccaac aggagggtaa atggcaattg
     2821 cgcttaaaat catttgcctc tgccgatgaa aaggaactgc tggggcagtt gctgcatgta
     2881 ataggacagt tggtgcaggc caaaaaggtg cgcatttggt ttgctggcca taatatccgc
     2941 gaattcgata ttccctacct gtgccgcagg ttgctgatca atggaatgga attgccggca
     3001 tggctcgatt ttcagagtct gaagccctgg gatgtaccgc tgattgacac gcttcaactt
     3061 tggaaattcg gtgattacaa gaattacact tcgctgaatc ttttggcagc ctgcatgggt
     3121 attcaatcgc caaaagacga tatggacggc agcatggtta atggtgtttt ctggaaagaa
     3181 aatgcgctgg agcgcattgt aacctactgc cagaaggatg tggtcacggt ggcacaattg
     3241 ctgctgaaat tctctggcaa gccaatgttg acagaagaac agattattac ggtataaaaa
     3301 gagaaaagac gatctggtgc gtcagatcgt cttctttata ggtgcaggtg ccgttcactt
     3361 ttctctaata aagaatcctg gccctgatgg tatgcttcac gtctttgagc aatttaatag
     3421 catgcttgct caattgtttg tcaacatcga gcaccacata cccgatatgt tcattggtag
     3481 ccaaatgctg tcccagtatg ttgatgcggg cattgctcag cgcggtattg atctcactca
     3541 ggacgccagg cacattttta tgaatgtgca gaatcctgtg cgcaccttcc agtgtaggca
     3601 ggcttagcgt aggtaccgta tgatttccat aggtgatgcc tttttcaaga tatcccagga
     3661 gtttggtact tacatccatc ccaatgtttt cctgtgcctc catggtgcta ccgccaatgt
     3721 gtggcgtgag cagcacattg ctaaggcctt gcagcgggga ggtgaattga tcgccatttt
     3781 tttcgggttc taccgggaat acatctatgg ctgcaccagc catgtcgccg gctttgagcg
     3841 ccatggccaa cgcatcgagg tcgaccacct caccccgggc ataattgatc aggatgctgc
     3901 ctttcttgaa ttgctttatc acctgcttgc tgatcaggtt tttggtgctt tgtatttcgg
     3961 gtacgtgcag gcttacaatg tctgctttgc ctaccagttc cttcaggctt ttgcaggcct
     4021 ctgcattgcc taatggcagt ttggtaagca catcataaaa gatcactttg agacccattg
     4081 cctctgccaa cacacttacc tggctaccga tattaccata gccaacaatg cccagggttt
     4141 tgcctctcag ttcatagctg cccgatgcat ctttcatcca gatgccttca tgggccgat
//
LOCUS       DATIQF010000030         1573 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_585, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000030 DATIQF010000000
VERSION     DATIQF010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_585"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1573)
                     /gene="secD"
                     /locus_tag="VLL95_00475"
     CDS             complement(<1..>1573)
                     /gene="secD"
                     /locus_tag="VLL95_00475"
                     /inference="COORDINATES: protein motif:HMM:TIGR01129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HSR37356.1"
                     /translation="VSDARQDYDERGRVAIKMEMDNIGTRIWAKMTEENVGKGIAIVL
                     DDFVQTAPTVNGPIPNGSSEITGSYEVKEAADVAEMLKSGKLPAPAKIVQEQVVGPTL
                     GQEAVKGGSMAFLISFFVIFVLMLVYYNNSGWIANISLILNLLFTISILTAMGATFTA
                     AGIAGLVLTIGMAVDTNVIVFERIKEELSWGRNYPTAVANGYRRSLAPVLDAHVTTFM
                     TAAILYYFGLGPVRGFAYVQMWGIVLNLFCGILISRTLTDWFTSKSTHLEYFTTLGKR
                     VFQHAKFKFIEFRKVTYAISVVVALLGLGSLIYGFEYGVEFKGGRSYTVRFDKPVKND
                     EVRDDLQKVFGEYPIIKTLGASNQLNITTAFKIDEVGANVDSTVERTLYTGLSKVLPQ
                     GLTYEEFDKNYKVGSQTVLPTISEDLKRGAIIATVVSLLIIVGYIFIRFRDWRYSLGT
                     IVALLHDVFVTLAVFSFLRHIVPFPLEIDQHFIAAVLTVIGFSMNDTIIVFDRIRENS
                     RSMHASDKGTIINKSI"
BASE COUNT          400 a          399 c          394 g          380 t
ORIGIN      
        1 tgatcgactt gttgatgatg gtgcctttgt ctgaagcatg catgctgcgg ctgttttcgc
       61 ggatacggtc gaatacgatg atggtatcgt tcatcgagaa accgataaca gtcagcaccg
      121 ccgcaataaa gtgctggtca atttccagcg ggaacggaac gatgtgtcgc aggaagctga
      181 atacggccag tgttacaaac acgtcgtgca acaaggcgac aatggtaccc aggctatatc
      241 tccagtcgcg gaaacggatg aaaatgtaac caacaatgat cagcagtgaa actacggtgg
      301 caatgatggc accacgcttc aggtcttcag aaatggttgg caacaccgtt tgtgaaccca
      361 ctttgtaatt cttgtcgaac tcttcgtagg taagtccctg tggcaatact ttgctcaggc
      421 cagtgtacag ggtgcgctcc accgtgctgt ccacattggc gcccacttca tcaattttga
      481 aggcggtggt aatgttcagc tggttgctgg cacccagtgt tttgataata ggatattcgc
      541 caaatacttt ttgcaggtcg tcgcgtactt catcattctt tacaggcttg tcgaagcgga
      601 cagtgtagct gcggccacct ttgaattcca caccatactc aaagccatag atcaatgatc
      661 ccaggcccag caaggctacc actaccgaga tggcgtaggt cactttcctg aactcaatga
      721 acttgaactt ggcatgctgg aacacacgct tacccagggt agtgaagtat tcgaggtgcg
      781 tgctcttgct ggtaaaccaa tcagtaagtg tgcggctgat gaggatacca cagaacaggt
      841 tgaggacaat accccacatc tgcacgtaag caaagccacg taccggaccc aaaccaaagt
      901 agtacaaaat agctgccgtc ataaaggtgg taacgtgagc atccaatacg ggtgccagcg
      961 aacggcgata accgttggcc accgcggtgg gatagtttcg tccccagctc agttcttcct
     1021 tgatcctttc aaacacaatc acgttggtgt ccaccgccat accaatggtc agtaccaaac
     1081 cggcaatacc tgcagcggta aaggtggcgc ccatggcggt aaggatggag atggtgaaca
     1141 gcaggttcag gatcagcgat atgttggcga tccatccgct gttgttgtag tacaccagca
     1201 ttaggacgaa aatcacaaaa aagctgatga ggaaagccat agaaccaccc tttacagctt
     1261 cctgtcccag ggtaggacct accacttgtt cctgcacaat cttggcaggg gcaggcagtt
     1321 taccgctctt cagcatttca gccacatcgg cggcttcttt tacttcatag ctgccagtga
     1381 tctctgagct accgttagga ataggaccat ttacagtggg ggcagtctga acgaaatcat
     1441 cgagtacaat ggcaatgcct ttgcccacat tttcttcggt cattttggcc caaatgcggg
     1501 tgccaatgtt gtccatttcc atcttgatgg ctacgcgacc acgttcgtcg tagtcctggc
     1561 gggcatcact cac
//
LOCUS       DATIQF010000031         2758 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_122239,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000031 DATIQF010000000
VERSION     DATIQF010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122239"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1286
                     /locus_tag="VLL95_00480"
     CDS             <1..1286
                     /locus_tag="VLL95_00480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37357.1"
                     /translation="NQNGPKEYGFRGNAQNLDLNRDFTKADSYNARCFAKAFHFIHPD
                     ILIDNHVSDGADFQHVFTLLTSQYNKLGGPLGEWLRSSFEPALYGSMDKKGWKLFPYV
                     NFDSYDLSRGMTQFYDPPRYSSGYAALFQTIGFVPETHMLKPYAQRVQSTYDFMATVI
                     NTSATMADALKAKRKAALEEVMAAKEWPLAWTPNRNQHDSLTFLGYKRDTVISEVTGL
                     PIMQYNRSQPFSGPVKFFSHFAPAKQVSIPRYYVIPQGWHEVTDRLKENNVQWQRLKA
                     DTSIDVTAYKIEEYKTSTRAYEKHYRQTEVKVKAVKQTVKFLKGDYLVSTNQPARRFL
                     FEMLEPTGDDSYFAWNYFDAILQQKEGYSDYRWEQVAAEYLRAHPELKKQLEDKKKAE
                     PEFAKNSSAILNWVYKNSPYYEPAHMRYPVFRIEY"
     gene            1318..2283
                     /locus_tag="VLL95_00485"
     CDS             1318..2283
                     /locus_tag="VLL95_00485"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HSR37358.1"
                     /translation="MRRWFYLLFLSIITLQLPAQNVQQQEQRVFLNYKFEKTSNSLEA
                     RYEEVIRKEDSGWHVWRYFYPDKQLAADYYIIEPTSRFKHGLALSYYANGQIADSGSY
                     TEGYKEKWHWSWYENGKPKTKFKYRNGLPVDTCTSWYATGETESVWILDTKGSGYRRD
                     MYPSQQLKAVGPISKGLQFGRWRYFDEAGPQIMEARFDGKGPQNITCFDTAGKKTNGP
                     CILEKGPEYIGGTDAWNRFLSTEAVWPAGLRLPDKIVQVAVSFVVYTDGHIGDFHVLH
                     SPHPLLTKEALRLLQLSGKWHPAVFMNKPVDFRYTSELYIRQKYH"
     gene            2285..>2758
                     /locus_tag="VLL95_00490"
     CDS             2285..>2758
                     /locus_tag="VLL95_00490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37359.1"
                     /translation="MKGYFSGPVSGPLFTASKRLIKTIFLLTLAAGTFAQTTTKGSWK
                     ATVYPGKIVKLTWTHGSMKNNEAIGDAVIAKPASTTFDVKYNTGQVKAPVKPMMPAED
                     IGPGPIIRGTPSGVKVIYRQTVIEIVNAYDSGHQRGFKVKMQPSEHWFGGGERTLP"
BASE COUNT          802 a          708 c          663 g          585 t
ORIGIN      
        1 ccaaccaaaa cgggcccaaa gaatacggtt tcaggggcaa tgcacagaac ctcgacctga
       61 accgcgactt tacaaaagcc gacagttaca atgcccgctg ttttgccaaa gcctttcatt
      121 tcatccatcc cgatatcctg atcgacaatc atgtaagcga tggcgccgat tttcaacatg
      181 tcttcacttt gcttacctcg cagtacaaca aactgggtgg cccgttgggc gaatggctgc
      241 gcagcagctt tgaaccagcg ctgtatggca gcatggataa gaaaggttgg aagctttttc
      301 cctacgtaaa ctttgacagc tacgacctca gccgcggcat gacacaattt tacgacccac
      361 cgcggtacag cagcggttat gcggccttgt tccagaccat tggctttgta cccgaaaccc
      421 atatgctgaa gccttatgcg cagcgggtgc aaagcaccta cgacttcatg gccaccgtga
      481 taaataccag tgccactatg gccgatgcac tgaaagccaa acgcaaagcg gctcttgaag
      541 aagtgatggc cgcaaaagaa tggcccctgg cctggacgcc caaccgcaac cagcatgatt
      601 cactcacctt tcttggctac aaacgagaca ccgtgatcag cgaagtgacc ggcctgccca
      661 tcatgcaata caaccgcagc caaccgtttt ccgggccggt aaaattcttc agccacttcg
      721 cccctgccaa acaggtatcc attccccggt attatgtgat cccgcagggc tggcacgaag
      781 tgaccgacag gctaaaggaa aacaacgtgc aatggcaacg actgaaagca gacacaagca
      841 ttgatgtgac tgcttacaaa atagaagaat acaaaaccag tacccgggcg tacgaaaaac
      901 actaccggca aacagaggtg aaggtgaaag cagtgaaaca aaccgtgaaa ttcctgaagg
      961 gcgattacct ggtttccacc aaccagcctg cccgcaggtt cctgtttgaa atgctggaac
     1021 ccaccggcga cgacagctat ttcgcctgga actattttga cgccattctg cagcagaaag
     1081 aaggttacag cgattaccgg tgggagcagg tggcagccga atacctgcgt gctcatcctg
     1141 aactgaaaaa gcaactggaa gataaaaaga aagcggaacc tgagtttgcc aaaaacagca
     1201 gtgccatact gaattgggtg tacaaaaatt cgccatacta tgagccggca catatgcgct
     1261 atcccgtttt caggattgaa tactaaactg gctggtgata tcctaacttt atgggccatg
     1321 cgccgctggt tctatttact ctttctttcg ataatcacat tgcagttgcc tgcacagaat
     1381 gtgcagcaac aagagcagcg ggtttttctg aattacaaat ttgaaaagac cagcaattca
     1441 ctggaagcac gttacgaaga agtgatcagg aaggaagatt caggctggca tgtgtggcgc
     1501 tatttctatc ccgacaagca gttagcagca gactattaca tcattgaacc cacttcacgc
     1561 tttaagcacg gattggcact ttcatactac gccaatggac agatcgctga ttctggttcc
     1621 tacacagaag ggtacaaaga aaaatggcat tggagctggt atgaaaatgg gaaacccaaa
     1681 acaaaattca aataccgcaa cggcttgccg gtagatacat gcacgagttg gtatgccacc
     1741 ggtgaaacag aaagcgtatg gatactcgac accaaaggaa gcggctaccg acgcgacatg
     1801 tatccgagcc agcagttaaa agctgtgggg cccatttcaa aaggcctgca atttggtcgc
     1861 tggcgctatt ttgatgaagc cggccctcaa atcatggaag cccgatttga cgggaagggt
     1921 ccgcagaaca tcacctgctt cgataccgcc ggaaaaaaaa caaatggccc ttgcatattg
     1981 gaaaaagggc ctgaatacat aggcggcact gatgcatgga accggtttct ttcaacagaa
     2041 gctgtctggc ctgccggact caggttgccg gataaaattg tacaagtggc ggtgagcttt
     2101 gtagtataca ccgatggcca cattggagat tttcatgtgt tgcattcacc acaccccctg
     2161 ctgaccaaag aagcgctgcg cctgcttcag ttgtctggca aatggcatcc tgcggttttt
     2221 atgaacaaac cagtcgattt tcgctacaca tcagaattat atatcagaca aaaataccat
     2281 tgaaatgaaa ggctattttt caggcccagt gagcggcccg ttgtttactg catccaaacg
     2341 tttaatcaaa acaattttcc tgctcacatt ggctgcaggc acgtttgcgc aaacaacaac
     2401 aaaaggcagt tggaaagcca ctgtataccc tggcaaaata gtaaagctga cctggaccca
     2461 tggcagcatg aaaaataatg aagccattgg cgacgctgtc atcgccaaac cggcaagcac
     2521 cactttcgat gtgaaataca acacgggaca agtgaaggcg ccggtaaagc caatgatgcc
     2581 ggcagaggac atcgggcccg gccccatcat tagaggcacc ccttcgggtg taaaagtcat
     2641 ttaccggcag actgttatcg aaatagtgaa tgcctacgac agcgggcacc agcgaggctt
     2701 caaggtaaag atgcaaccca gtgagcactg gtttggcgga ggcgaacgca ccctgccc
//
LOCUS       DATIQF010000032         7122 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_31017, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000032 DATIQF010000000
VERSION     DATIQF010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7122
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31017"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1525
                     /locus_tag="VLL95_00495"
     CDS             <1..1525
                     /locus_tag="VLL95_00495"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HSR37360.1"
                     /translation="IATDTLLLRQKLFTGTVDEILFHDKSNRLTVLGDDGITATIDLK
                     RMEVLYNTALLFNNSDFGFSLYTPKNYYLVSPEFVNEMHFVKGTETYALSQFDLQLNR
                     PDKVLEQIGYTDPELLRMYAKAYERRLQKAGFNVSSGGFKDLPPVICRSAELSGTITE
                     DSTITLQWSTAASAADIAALRLYINGQIIQTISQPANEWTIPVSLNLGDNNIEASYLT
                     KDGVESLPASVSIQYAPAKSPVQKTIFIGIGVSHYQDTVFNLTYAAKDAGDLAKKFQQ
                     SRDANIYTFLDAQVTRAMLDSIRRIVQSTSIHDQVILSFSGHGLTDNSYKFFFGSHDI
                     DFTNPGAKGISYADITTLLDDVPARKKLILIDACHSGETDASVTYFGKATTDTQYVRE
                     KTRSTIGKKSSGGKMMNTVKLMEQYFADLSTASGTNVLSAAAGEEYALESSQWANGVF
                     TYSVINGIFEKQADKNSDGKVMLSELRKYVQEEVLKLTGGKQQPTSRNSNPRFDWAL"
     gene            complement(1520..2368)
                     /gene="folP"
                     /locus_tag="VLL95_00500"
     CDS             complement(1520..2368)
                     /gene="folP"
                     /locus_tag="VLL95_00500"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR01496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HSR37361.1"
                     /translation="MPNTVYSLNCRGKLVTIAQPVVMGILNVTPDSFFEGSRQHSLDH
                     VLATAARMLQEGAMILDIGGQSTRPGAADIGAAEETDRVVPAIEAIAAHFPDALISVD
                     TFRAPVARAAVQAGAHIVNDVSGGSLDADMLTTVGELQVPYICMHMRGTPATMQHLTQ
                     YDNMVTDVIDFFVERTDACRKAGIKDVIIDPGFGFAKTPVQNFQLLRELQSFQIFGRP
                     VLLGVSRKSTICKTLNITADEALNGTTVLNTIGLLNGASILRVHDVKEAVEAVKLVVA
                     VNAAHS"
     gene            2407..2946
                     /locus_tag="VLL95_00505"
     CDS             2407..2946
                     /locus_tag="VLL95_00505"
                     /inference="COORDINATES: protein motif:HMM:NF019282.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1599 domain-containing protein"
                     /protein_id="HSR37362.1"
                     /translation="MSNTLEQYNAVVASAKDIFMKKASDYGTSWRVLRPISVADQIYI
                     KARRIRQLQEHEIQMVDDDIPSEFKGIINYAIIGLIQLDIHHEEIETLPLEECNSRYD
                     EKVALVRSLMEKKNHDYGEAWREMSQESFADLIMMKIYRMKQIIRNEGKTLISEGLDA
                     NYMDIMNYAIFALILLGEK"
     gene            3015..3476
                     /locus_tag="VLL95_00510"
     CDS             3015..3476
                     /locus_tag="VLL95_00510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37363.1"
                     /translation="MDIGQKSHAARLLSGAYTSWLLRNWALTYLLSPLLYDWFWPHTD
                     AYHNAYGFWGPAYPVILFLFNAVIGLPLLLAGIVCQDFVTRKWQAASNKKGLIVVVIF
                     LLMLLGQVALKALLFSMPFFTLFKDAAGPTFVAAAVSLLLQSRLLFRKQQL"
     gene            3473..4594
                     /locus_tag="VLL95_00515"
     CDS             3473..4594
                     /locus_tag="VLL95_00515"
                     /inference="COORDINATES: protein motif:HMM:NF045576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BT_3928 family protein"
                     /protein_id="HSR37364.1"
                     /translation="MKSITQLFRLLVGLLFIASGLIKANDPLGLAYKMDEYFAVWNWD
                     WTKPYTLYMSLAMNTMEIVAGVALLIGWAPRFFSRLVLLLIVFFTFLTGYAVLSGKIK
                     TCGCFGDCIPLQAWQSFAKDLVLLFMTLVLVINYKYINSLLPIRAALFLVLFSAGFVF
                     WGQMNVLKHLPYVDCLPYKAGNNLLEKMQPPTGSIPDSVAIFYKYKYNGKEVTFDAMH
                     FPDDFSEDKYEYISREEKIVRKGNAEPAIKDFALYGLNGEDTTKAVLQTQGRYLLFFA
                     KDFSGQTPEWLELWSKIYLKANEKKVPVILLSNQPVAARRFFNETNHFNVPVLSCDGT
                     VMKTMLRSKTGVVAMDGATVAAKWSEADMNDVIRWLNQP"
     gene            4664..5749
                     /locus_tag="VLL95_00520"
     CDS             4664..5749
                     /locus_tag="VLL95_00520"
                     /inference="COORDINATES: protein motif:HMM:NF015684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HSR37365.1"
                     /translation="MKKLDWYILKQYITTFVFAILLLTFITVVIDTSEHSDDFVKSGL
                     SSWDIIRQYHFGFIPRMITLLFPLFIFISVIFFTSKLAGRTEVIAILASGISYNRFLR
                     PYWVGSILFALILWLSFRYVTPIANRIFSDFQNKYIDIPDFDRDNNAGTIYFRNDSTH
                     FGQVSYFDTASKRGSSFVLQEIKNNRLLKNIRAESLIWDTAKKKWKLETVTVRRIDSI
                     SEKVWQTNDTIIALNFKPEEFKKGQYTKDILKTPELVELINKEKLRGADNINDLIVER
                     HRRDATPVSIILLTMMGVAVSSRKVRGGSGFHLAIGIVLAALFILTDRFSTIFSTKGS
                     MPPMLAAWTPNIIFFFVTLFLFRKAPK"
     gene            complement(5757..6161)
                     /locus_tag="VLL95_00525"
     CDS             complement(5757..6161)
                     /locus_tag="VLL95_00525"
                     /inference="COORDINATES: protein motif:HMM:NF024834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HSR37366.1"
                     /translation="MRKIGFTILLTGITATGFLQTGKPANYEAGKKVYNQNCLSCHMA
                     DGSGVPGLNPPLIKTQWVLGEKKKLINIVLKGFNDPITIDGEDYANPMPAQAYLTDQQ
                     ISDVLTYVRNSFGNKATPVTAAEVKAQRAAKK"
     gene            complement(6241..>7122)
                     /locus_tag="VLL95_00530"
     CDS             complement(6241..>7122)
                     /locus_tag="VLL95_00530"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HSR37367.1"
                     /translation="NVKSPEVLVEGLWNKRQHASKSIALDDAGNLYVNIGAPSNACQV
                     NDRTKGSPGQDPCPILDSAGGIWQFKANQQHQGYHNGVRYATGLRNVVGLDWNKEVNE
                     LFVMQHGRDQLNQLHPDMYNDEQSAELPAEEFFMATKGSDFGWPYCYYDGIQKKKVLG
                     PEFGGDGKTQGRCADKGQPLVAFPAHWAPNAVLFYTGDQFPARYKNGAFIAFHGSWNR
                     APMRQAGYCVVFVPFKNGKPSGDYEIFADGFTQKEYIMNTGEAKFRPCGLAQSPNGTL
                     LISDSRAGRIWEISWKG"
BASE COUNT         1748 a         1870 c         1727 g         1777 t
ORIGIN      
        1 cattgccacc gacacattgc tgcttcgaca aaaacttttc actggcacag tggatgaaat
       61 actttttcat gacaaaagca atcgcctgac cgttttgggt gatgatggca tcacggctac
      121 cattgatttg aaacggatgg aagtgctgta caacactgcg ttgttgttca acaacagcga
      181 ttttggattt tcactgtata cgccaaagaa ttactacctc gtatctcctg agtttgtgaa
      241 cgaaatgcat tttgtgaaag gcactgaaac ctatgccctc tcccaattcg atcttcaatt
      301 gaacaggcct gacaaagtgc tggagcagat tggctatacc gatcctgaac tattgcgcat
      361 gtatgccaaa gcgtatgaac gccgattgca aaaggccgga ttcaatgtca gcagcggtgg
      421 ttttaaagac ctgccaccgg tcatttgccg ttccgctgaa ttatcgggca ccattacgga
      481 agattccacg atcaccctgc aatggagcac tgcggcttcc gctgctgaca tagcagcgct
      541 caggctttac atcaatggac agatcatcca aacgatttcg cagccggcga atgaatggac
      601 cataccggtg tcattgaacc tgggtgacaa caatattgaa gccagttatc ttactaaaga
      661 tggtgtggag agtttgccgg cttcggtcag tatccaatac gctccggcaa aaagtcctgt
      721 tcaaaaaaca attttcattg gcattggcgt ttcgcattac caggacacag ttttcaacct
      781 cacctatgcc gccaaagacg ccggcgacct ggccaaaaaa tttcagcaat cccgggatgc
      841 caatatttac acgttcctcg atgcacaggt aacccgggca atgctcgaca gcatccggcg
      901 catcgtacaa tccaccagca ttcatgacca ggtgatcctc tccttttcag ggcatggcct
      961 caccgacaat tcgtataaat tcttttttgg cagccatgat atcgatttta ccaaccccgg
     1021 tgccaaaggc atttcctatg ccgacatcac aacactactg gatgatgtac cggcccgcaa
     1081 aaagctcatc ctgatagatg cctgccacag tggcgaaacc gatgcgtcag tcacttattt
     1141 cggaaaggcc accaccgata cgcaatacgt tcgtgaaaaa acacggagta ccattggcaa
     1201 aaaatcttcg ggtggtaaaa tgatgaacac ggtgaaactg atggaacaat actttgccga
     1261 tctgtctacc gccagtggca ccaatgtatt gtcggccgct gccggtgagg agtatgcatt
     1321 ggaaagcagc caatgggcga atggtgtatt cacctatagt gtcatcaatg gcatttttga
     1381 aaaacaagcc gacaaaaaca gcgatggaaa agtgatgctc agcgaactca gaaaatatgt
     1441 gcaggaagaa gtgttgaaac tgacaggcgg caaacaacaa cccaccagcc gcaacagcaa
     1501 tccgcgtttt gactgggctt tatgagtgcg ccgcatttac ggccaccacc agcttcacgg
     1561 cttccaccgc ttccttcaca tcgtgcaccc gcagtatgct ggcgccattc agcagcccga
     1621 tggtattgag aacggtggtg ccattcaatg cttcatcggc agtaatgttg agcgttttgc
     1681 agatggtgga tttgcggctc acccccagca acaccggtcg cccgaaaatt tgaaacgact
     1741 gcaattcacg aagcaattga aaattctgaa ccggcgtttt ggcaaaacca aagccgggat
     1801 caatgatcac atcttttatg ccggcttttc ggcaggcgtc tgttctttcc acaaaaaagt
     1861 cgatcacatc cgttaccatg ttgtcgtact gcgtcagatg ctgcatggtg gcaggcgttc
     1921 cccgcatgtg catgcatatg tatggcacct gcagttcgcc cacggtggtc agcatgtcgg
     1981 catcgaggct tcccccgctc acgtcattca caatatgggc accggcttgt acagccgccc
     2041 gggccaccgg cgcccggaaa gtatccacgc tgatgagggc atccggaaaa tgcgccgcaa
     2101 tggcttcaat ggccggcacc acacggtctg tttcttccgc cgctccaatg tcggcagcgc
     2161 cggggcgggt gctttggccc ccaatatcca ggatcattgc tccctcctgc aacatgcgtg
     2221 ctgcggtggc cagcacatga tccagcgaat gctgccggct cccctcaaaa aaggaatcag
     2281 gcgttacatt gaggatgccc atcacgaccg gctgggcgat ggtcacaagt tttcccctgc
     2341 aattgagcga ataaacggtg ttgggcacga actattactt ttggaacccg gtaaaagtag
     2401 taccagatga gcaataccct cgaacaatac aatgcagtcg tcgcttcggc caaagacatt
     2461 ttcatgaaga aggcgtcaga ttatggcact tcgtggaggg tgcttcgtcc tatttcggtg
     2521 gcagaccaga tttacatcaa agcccgccgc atccggcagt tgcaggagca cgaaatacag
     2581 atggtggatg atgacattcc ttccgaattc aaaggcatca tcaactacgc catcatcggc
     2641 ctgatccaac tggatattca tcacgaagaa attgaaaccc tgccgctgga agaatgcaac
     2701 agccgctatg atgaaaaggt ggcattggtg cggtcactca tggaaaaaaa gaatcatgac
     2761 tatggcgagg cctggcggga aatgagccag gaaagttttg ccgacctcat catgatgaag
     2821 atctaccgca tgaagcagat catccgcaat gaaggcaaaa cactcatcag cgaaggcctc
     2881 gatgccaatt acatggacat catgaactac gccatttttg cccttatcct gctgggagaa
     2941 aaatgatacc cggcagtggg tagattttca tattaatatt ctgcctaatt tgctttcaaa
     3001 ttgcttgccc tgtaatggac ataggtcaga aatcccatgc tgcacgattg ttatccggcg
     3061 cctatacttc gtggctgttg cgcaattggg cacttaccta cctgctttcg cccctgttgt
     3121 acgattggtt ttggccccac accgatgcct atcacaacgc ttatggcttt tgggggccgg
     3181 catatcctgt cattcttttt cttttcaatg ctgtcattgg cctgccgctt ttgctggcag
     3241 ggatcgtgtg ccaggatttt gtcaccagga aatggcaagc ggcaagcaat aagaaaggac
     3301 tgatcgtggt ggtcattttt ctgctcatgc tgctgggcca ggtggccctg aaggcgctgc
     3361 ttttctccat gccttttttc acgctgttca aagatgctgc gggccctact tttgtagccg
     3421 cagccgttag cctgcttttg cagagccggt tgttgtttcg taaacaacag ctatgaaatc
     3481 aatcactcag ctttttcgcc tgcttgtagg cttattgttc attgccagcg gactcataaa
     3541 ggccaatgac ccattgggac tcgcctacaa aatggacgag tacttcgcgg tttggaattg
     3601 ggattggacc aagccttata ctttgtacat gagcctggcc atgaatacca tggaaattgt
     3661 ggccggggta gcattgctca ttggttgggc gccgaggttc ttcagccgtt tggtgttgct
     3721 gctgattgtg ttcttcacct tcctgaccgg ctatgccgtg ttgagcggca aaatcaaaac
     3781 ctgcggctgc tttggcgatt gcatcccgtt gcaggcctgg caatcgtttg ccaaagacct
     3841 ggtgctgctg ttcatgacac tggtactggt gatcaactac aagtatatca acagcctgct
     3901 ccccattcgt gccgctttgt tcctggtatt gttcagtgcg ggctttgtat tctggggtca
     3961 aatgaatgtg ctgaaacacc tgccttacgt ggactgcctg ccctataaag cgggcaacaa
     4021 cctgctggaa aaaatgcagc cgcctaccgg ctccatcccc gacagcgtgg ccatttttta
     4081 taagtacaaa tacaatggca aggaagtaac ctttgatgcc atgcattttc ccgatgattt
     4141 cagtgaagac aaatacgaat acatatcgag ggaagaaaag atagtacgca aaggcaacgc
     4201 ggaacctgcc atcaaagatt ttgccttgta cggcctcaat ggcgaggaca ctaccaaagc
     4261 ggtgctccaa acgcaggggc gatacctgct tttctttgcc aaggattttt cggggcaaac
     4321 accggaatgg ctggagttgt ggtcaaaaat ttacctcaag gccaatgaga aaaaagtgcc
     4381 cgtcatcttg ctgagcaacc agcctgtggc agcccgtcgc ttcttcaatg aaaccaacca
     4441 tttcaacgtg ccggtgctca gctgcgatgg aaccgtgatg aagaccatgc tgcgcagcaa
     4501 aacaggcgtg gtggccatgg atggcgctac cgtggcggcc aaatggagcg aagccgatat
     4561 gaatgacgtg atcaggtggc tgaaccagcc ctgaacagtg acaaacttta acggaaacat
     4621 tgtcctttta cctgcaattt gcagccgata gaaaagacct cctttgaaga agcttgactg
     4681 gtacatactg aagcagtaca tcaccacctt cgtgttcgct attttgttgc tcacctttat
     4741 tacggtagta attgatacca gcgagcactc tgatgatttt gtgaagagcg ggctttccag
     4801 ttgggacatc atccggcaat atcatttcgg gttcattccc cgcatgatca cgttgctttt
     4861 ccccttgttc attttcatct ccgtcatctt tttcacttca aagctggcag gccgcaccga
     4921 ggtgatcgcc atcctggcca gcggcatttc ctacaaccgt ttcctgcggc cctactgggt
     4981 aggctccatc ctgtttgccc tcatcctctg gttgtccttc cggtatgtca cgcccattgc
     5041 caaccgcatc ttttccgatt ttcagaacaa gtacatcgac atccccgact ttgaccgcga
     5101 caacaacgcc ggcaccattt acttccgcaa cgacagcaca catttcggcc aggtatctta
     5161 tttcgacacc gccagcaaac gtggctccag ctttgtgttg caggaaataa aaaacaaccg
     5221 cttgttgaag aacatcaggg cagaatcgct gatatgggat accgccaaaa agaaatggaa
     5281 actggaaacc gtaacggtca ggagaattga cagcattagc gaaaaagtgt ggcaaaccaa
     5341 cgacaccatc attgccctca atttcaaacc cgaagagttc aagaaggggc agtacaccaa
     5401 agacattttg aaaacaccgg aactggtgga actgatcaac aaggaaaaac tcaggggagc
     5461 ggacaacatt aatgacctga tcgtggaaag acaccgcagg gatgccacac cggtatccat
     5521 catcctgctt accatgatgg gtgtggcagt cagcagccgc aaagtgcggg gcggcagcgg
     5581 ttttcacctg gccattggca ttgtgctggc ggccctgttc attctcaccg accgcttcag
     5641 caccattttc agcaccaagg gctccatgcc tcctatgctg gccgcctgga cgcccaacat
     5701 catcttcttc tttgtaaccc tttttctttt ccgcaaagcg cccaagtaac agcgccttat
     5761 tttttggccg cccgttgcgc tttcacttca gccgcagtca ccggcgtggc tttgttgcca
     5821 aaactgttgc ggacatacgt gagcacatca gaaatttgct gatcggtcaa ataagcttgc
     5881 gccggcatgg ggttggcata gtcctcacca tcaatcgtga tgggatcatt gaaacccttc
     5941 agtacgatgt tgatgagttt tttcttttcg cccaataccc attgggtttt gatcaagggt
     6001 ggattaagac ccggcacacc actcccatcg gccatgtgac aactcaaaca attttgattg
     6061 tacaccttct tacccgcttc atagttggcc ggtttgccgg tttgtaaaaa tcctgtagct
     6121 gtaatgcctg tcaacaaaat ggtgaatcca atctttctca taggttggta aatgctattt
     6181 cgttttcaat attcctgtaa ataagcggaa acaatgaccc gtcaactttt caatcacagg
     6241 ttatcctttc caggaaattt cccaaatgcg tcctgccctt gaatctgaga tcagcagggt
     6301 accgttcggg ctttgggcca aaccacaggg acggaatttg gcctcgcctg tgttcatgat
     6361 gtattccttt tgcgtaaagc catcggcaaa aatttcgtaa tcgccgctgg gcttgccatt
     6421 cttgaaaggc acgaaaacca cgcagtagcc ggcctgccgc atgggcgccc ggttccagct
     6481 gccgtggaag gcaatgaaag ccccgttttt gtagcgggca ggaaactggt cgccagtgta
     6541 gaacagcaca gcattgggcg cccagtgggc cgggaaggcc accaatggct gtcctttgtc
     6601 ggcacatctt ccctgggtct tgccatcgcc cccaaattcg gggccgagta ctttcttctt
     6661 ttgaatgcca tcgtagtagc aataaggcca accgaaatcg gaccctttcg tagccatgaa
     6721 aaattcttct gccggcagtt cagcgctttg ctcgtcgttg tacatatcgg ggtgcaactg
     6781 gttcagttgg tcgcggccat gctgcatcac aaaaagctcg ttcacttcct tgttccagtc
     6841 gagccctacc acgttgcgca aaccggtggc ataccgtacg ccattgtgat aaccctggtg
     6901 ttgttggttg gctttgaact gccagatgcc cccggcggaa tcgaggatgg gacaagggtc
     6961 ctggccgggt gaacccttgg tgcgatcgtt cacctggcag gcattgctgg gagcgccgat
     7021 gtttacatag aggttgccgg catcgtcgag ggctatggat ttggaagcat gttgccgctt
     7081 gttccacaag ccttctacaa gtacctccgg tgattttaca tt
//
LOCUS       DATIQF010000033         2811 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_289441,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000033 DATIQF010000000
VERSION     DATIQF010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2811
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289441"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            23..328
                     /locus_tag="VLL95_00535"
     CDS             23..328
                     /locus_tag="VLL95_00535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37368.1"
                     /translation="MAKTLLQLSFTLKQSGGNDTDGCAQSDKESYFAQLSVQFQIPAL
                     HKDGLHEKQDYPSEYKHCMQVNGVGPGLRTRKQGVNESFGKSNQNSPDANQRKKYKE"
     gene            843..2381
                     /locus_tag="VLL95_00540"
     CDS             843..2381
                     /locus_tag="VLL95_00540"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSR37369.1"
                     /translation="MTFDKMGLIDPLLKALTEEGYTTPTPIQAQAIPHLLQGRDLLGC
                     AQTGTGKTAAFALPILQYLQQHPVKQHGKKPIRALILTPTRELAIQIEESLNAYGRHL
                     PLNHLVIFGGVGQQPQVQALHKGVDVLVATPGRLLDLMQQGFIALQHLEVFVLDEADR
                     MLDMGFVHDVKKVIAKLPAKRQSLFFSATMPPDIQALANSILTNPVKVEVTPVSSTAE
                     TIQQHIYYVSKNDKRHLLLHLLQKHTDLTSVLVFTRTKHGADRVVKDLVRAGQAAQAI
                     HGNKSQNARQQALQNFKSGTTRVLVATDIAARGIDIDDLGYVINYELPNIPETYVHRI
                     GRTGRAGASGIAFSFCEAEEREYLRDIQKLIKRQIPVIHEHPFAGNANAVNEKPEQPR
                     QERQPRQQQQGRHAQKQPGRQPQQAPVKRQQAPMNEKPEREKQATPPAQQQKPVQAPV
                     GRQHPQPDNKKPVQQQGMQRKFKKPTGPLPMPAKKEVSNEAGSLPSKHVPNVTPLFDD
                     DDRW"
     gene            2542..>2811
                     /locus_tag="VLL95_00545"
     CDS             2542..>2811
                     /locus_tag="VLL95_00545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37370.1"
                     /translation="MHKSLFVGVAMWLLLFTTACRHSKVIQLADTDVQGACNPKNIRT
                     IDDSAFSIIHVTKTAPHPELSKYYSATSLQVAGLIGATDLLNSYFN"
BASE COUNT          748 a          775 c          689 g          599 t
ORIGIN      
        1 ctagtataga agaaacagca gtttggccaa gaccttgctt caactctctt tcacattgaa
       61 acaaagcggc gggaatgata ctgacggctg cgcccaaagc gataaagaat cctactttgc
      121 ccagctgtcg gtgcagtttc agattcctgc gttgcacaag gatggattgc acgagaaaca
      181 ggattatcca tccgaataca aacattgcat gcaggtaaat ggagtagggc caggtcttcg
      241 tacccgcaaa caaggggtaa atgaaagttt tggcaaatcc aaccagaaca gccccgatgc
      301 caaccagaga aagaagtaca aagaatgaag gggaaaaatg agctaaacgg gacctatgca
      361 tagacctgat tcaattagct gggaagctgg ggttctggaa aaggcaacta aagcaattag
      421 ttccgccaat ttaattgaac aagcacagga ttgcaagctg ttaggaagat ttccggtttc
      481 agccatgtct ctgcttcgcg gcaaacggct ttttctgggt agttgaactt cgtttttata
      541 tcaggccgtg tccgcttgtg ggcgagacac ggctgggaca gcctcgtgaa ctttgactat
      601 ttatcaactc attaccaact taaatcccca tcttcgcatc ggttttgtaa taaaacctgt
      661 tgttaaggtg ttgccaggtc atcctgctct gcttacttct cccatccgcc tcttctccgt
      721 tggatgatgc agtgtcagcg atcctttttc atcattgaca acgccatttt ctgaaattaa
      781 ttaaacaaac aaagtgggtc gctacgctat gtcgtggcac cgttccactc gtacaacttt
      841 ctatgacttt tgacaaaatg ggtctcatcg accccctcct gaaagcctta actgaagaag
      901 gctacactac gcctacgccc atccaggcgc aggccattcc gcacctgctg caaggccgcg
      961 acctgctggg ttgcgcccaa accggcaccg gtaaaaccgc cgcttttgca ctgcccatat
     1021 tgcagtacct gcaacagcac ccggtaaagc aacacggcaa aaagcccatt cgggccctca
     1081 tcctgacgcc cacccgcgaa ctggccattc aaattgaaga aagcctgaac gcctatggcc
     1141 gtcacctgcc cctgaaccac ctcgttattt ttggtggcgt aggccagcag ccacaagtac
     1201 aggcattgca caaaggcgtg gacgtgctgg tagccactcc cggccgcctg ctcgacctga
     1261 tgcagcaggg cttcattgcg ctgcagcacc tcgaagtgtt tgtgctggac gaagccgacc
     1321 gcatgctcga catgggtttt gtgcacgacg tgaaaaaagt gattgccaaa ctgccggcca
     1381 aaaggcagag cctgttcttc agcgctacca tgccgcccga tatacaggca ctggccaaca
     1441 gcatcctcac caaccccgta aaggtggaag tgactcctgt gagcagcacg gctgaaacca
     1501 ttcagcaaca catttactat gtgagcaaaa acgacaaacg ccacctgctg ctgcacctgc
     1561 tgcaaaagca taccgacctg accagtgtgc tggtatttac ccgcaccaag catggcgccg
     1621 accgggtggt aaaagacctg gtgcgtgccg gccaggctgc acaggccatt catggcaaca
     1681 aaagccagaa tgcccgccag caggcgctgc aaaattttaa aagcggtact acccgtgtgt
     1741 tggtagccac cgacattgct gcccgtggca tcgatatcga cgacctcggt tatgtgatca
     1801 actacgaact gcccaacatt ccggaaacct atgtgcaccg cattggccgt accggcaggg
     1861 ccggcgccag cggcatcgct ttctcctttt gcgaagcaga agaacgcgaa tacctgcgtg
     1921 acattcagaa gctgatcaag cggcagatac cagtgattca cgaacatcct tttgccggca
     1981 acgcaaatgc agtgaacgaa aagcccgagc agccaagaca ggaacgccaa ccccgccagc
     2041 aacagcaagg tcgccatgca caaaagcagc cgggccgcca accacagcag gcgccggtaa
     2101 agcgccagca ggcacctatg aatgaaaagc cagagcgtga aaagcaggcg acgccacctg
     2161 cccagcaaca aaaaccggtg caggcacccg ttggccgcca gcatccgcag ccggataata
     2221 aaaagcctgt acagcagcag ggcatgcagc gtaaattcaa aaaacctact ggtccgctgc
     2281 ccatgcctgc caaaaaagag gtaagcaacg aagccggctc actgcccagc aaacacgtgc
     2341 ccaacgtaac accgttgttt gacgacgacg acaggtggta agatgattgt tggttgacag
     2401 ttgattgttg actgttgaaa gaaaatatgc agaagcaccc gttgagtttt cagcgggtgt
     2461 tttttgttga gggcgtctgg ggtgagctgg ttcacttttc tgcgtggtac agctgctgta
     2521 aaaaagagta atctttgtaa gatgcataaa tcgttatttg taggggtggc tatgtggttg
     2581 ctgcttttta ccaccgcctg ccggcatagc aaggtgatac aacttgccga cacggatgtg
     2641 cagggagcct gcaaccctaa gaacatccgc accatcgatg attctgcgtt ctctattatt
     2701 catgttacca aaaccgcacc acatcctgaa ctcagcaagt attattcagc caccagcctg
     2761 caggtggccg gcctcatagg cgccacggat ttgctgaatt cctattttaa c
//
LOCUS       DATIQF010000034         4080 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_91870, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000034 DATIQF010000000
VERSION     DATIQF010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4080
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91870"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..508)
                     /locus_tag="VLL95_00550"
     CDS             complement(<1..508)
                     /locus_tag="VLL95_00550"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37371.1"
                     /translation="MSSVLLLSIVFAYFAVLLGVAWYTSRNANNDSFFIGNRSSNWML
                     VAFGMIGTSLSGVTFVSVPGGVAKESFAYFQITLGYFIGYIVIAFVLLPLYYRLNLTS
                     IYNYLSSRLGFASYKTGAGFFILSRTLGATARLYLVVNILQEAILSSFNIPFWATTLI
                     LLIMILVYT"
     gene            675..1217
                     /locus_tag="VLL95_00555"
     CDS             675..1217
                     /locus_tag="VLL95_00555"
                     /inference="COORDINATES: protein motif:HMM:TIGR00730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HSR37372.1"
                     /translation="MKSLAVFCGSKDGSNELFLLHAQQLGRLLAENGLRIVYGGGNKG
                     LMGAVADAALAAGGEVLGVIPEQLRSWEHQHEGLTELQVVPDMHTRKRLMYEYCDAAI
                     ILPGGFGTMDEMFEMLTWNQLAIHDKPIFILNTAGYYSDLFQMMQVMYRYGFLYDPLE
                     QRVRIFDLPQGVVDHVRSLA"
     gene            complement(1214..1777)
                     /locus_tag="VLL95_00560"
     CDS             complement(1214..1777)
                     /locus_tag="VLL95_00560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37373.1"
                     /translation="MKKLLAIFSLLVLSHSLLAQNDQDSSFQEKERKFDPNRLVFGGI
                     IGASFGNFTFVQIAPQVGYMFNQYLTAGGGINFIFSSQKFSNGDKYEYGFAGLNVFAR
                     AFPLRFIVVSAQPELNYSWGKYRFAGGAPDQKMDGMFVPSLLLGGGLVIPTGGRGGMM
                     LTMQYDVIQNARSPYGSSAFVNVGFTF"
     gene            1973..2791
                     /locus_tag="VLL95_00565"
     CDS             1973..2791
                     /locus_tag="VLL95_00565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37374.1"
                     /translation="MQQTLKTNSARVALLLLAGLVTLIIYAPFRSQAQQKQPAKAGQQ
                     QDTTRRKSAAHGHTHKTYESLAEDLADAARQLETEMKKLQEVELPKMQAEMQKALKEL
                     DAAKLKAEIDKSVELADLAGIQREIEASMKQVQQVEMQKALKAQLAAIDFQKLQQEMQ
                     ELKTKHAASIEKEMAQARKEMEKNSLNLEETMKDAKRQMQAAQAEIEQMKKGIDELIK
                     DGIVKKDEPAEIEWEGDTLIINGKRQPAEVSKKYEAYFRKGKFSFNGKSPKIVL"
     gene            3120..3347
                     /locus_tag="VLL95_00570"
     CDS             3120..3347
                     /locus_tag="VLL95_00570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37375.1"
                     /translation="MRLKITDTNFTSINEWLFRLVDESENVYYIMNEPFYRKHNIKSP
                     VSKKELDCYGRGQWITVSVEEIDGKRVVVNM"
     gene            3473..4033
                     /locus_tag="VLL95_00575"
     CDS             3473..4033
                     /locus_tag="VLL95_00575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37376.1"
                     /translation="MLRSLWISLIVFTLSCTASKHFGENECNPNSIPDSVYFNYLKVL
                     RKYELSQQIQKKYDGENILLFYFRSKSGNSISGGKLLVFDSSFNLTDASSLPSCCDSS
                     VLQLKRPLDSKTVKKINGVDLSSLIGNSSGFYECRKPDIHELFEVVFTMQRGKITSGI
                     LVEGECFIKEFDKSDHTLFLMRKILL"
BASE COUNT         1263 a          870 c         1032 g          915 t
ORIGIN      
        1 aggtgtacac cagtatcatg atgagcagga tgagggtggt ggcccaaaac gggatattga
       61 aactggaaag aatggcttcc tgcaaaatgt tcactacgag gtacaggcgg gccgtggcgc
      121 cgagggtacg gctgaggatg aagaaaccgg cgccggtttt atacgatgca aagccgagac
      181 ggctgctcag gtagttgtaa atgctggtga ggttgagccg gtagtaaagc ggcagcagca
      241 caaaggcaat aacgatatag ccgatgaaat agcccagcgt gatctggaaa taggcgaagg
      301 attctttggc cacaccaccg ggcacgctta caaaagtgac gccgctaagg ctggtgccta
      361 tcatgccaaa ggccaccagc atccagttgc tgcttcggtt gccaatgaaa aaagaatcgt
      421 tgttggcgtt gcgactggta taccaggcca cacccagcaa tactgcaaag taggcgaaca
      481 cgatggaaag caataacaca gaactcataa gcaatcatct gattaggcgg tcaaaataga
      541 acattaaacg cagaaacggc gcatattacc ggcgaagaaa atagcggctt gccgtgcagt
      601 aattgttaag aaaaattaat tagaaaggcg ggccggctgt ggggctgcag ggtatcttgc
      661 ggcaaacatc agcaatgaaa tcactggcag ttttttgtgg ttcaaaggat ggcagcaatg
      721 aattgttttt gctgcatgca cagcagttgg gtcggctatt ggccgaaaat ggattgcgca
      781 ttgtgtatgg cggcggcaac aaaggactga tgggcgccgt agccgatgca gctttggcgg
      841 cgggcggcga agtgctgggc gtgatacccg aacaactgcg cagctgggag caccagcacg
      901 aaggattgac agaactgcag gtggtgcccg atatgcacac ccgcaaacgc ctgatgtacg
      961 agtactgcga tgccgccatc attttgcccg gcggctttgg caccatggac gaaatgtttg
     1021 aaatgcttac ctggaaccag ttggccatac acgacaaacc cattttcatc ctgaacacgg
     1081 cgggttatta ttccgacctg ttccagatga tgcaggtgat gtaccgctat ggattcttat
     1141 acgatccgct ggagcagcgg gtgcgcatct tcgacctgcc acagggagtg gtggatcatg
     1201 tacgcagcct tgcttagaaa gtaaaaccta cgttgacaaa ggcactgctg ccatacggcg
     1261 accttgcgtt ttgaatgaca tcatattgca tggtcagcat catgccgccg cggccaccgg
     1321 taggaatcac gaggccacct cccagcaaaa gggacggaac aaacatgcca tccatttttt
     1381 gatcgggggc gccgccggca aaccggtatt tgccccagga ataattgagt tcgggttggg
     1441 ccgaaacgac gatgaagcgc aggggaaagg cgcgggcaaa aacgttcaag ccggcaaagc
     1501 cgtattcata tttgtcgccg ttgctgaatt tctgggagga aaaaatgaag ttgataccac
     1561 caccggcagt taggtattga ttgaacatat agcccacctg tggtgctatc tgcacaaagg
     1621 tgaaattgcc gaaggaagcg ccaataatgc cgccaaacac caaacggttg ggatcaaatt
     1681 ttctttcttt ttcctggaag ctactgtcct ggtcattctg ggcgaggagg ctgtgtgaca
     1741 aaacgagcag actgaaaatg gctaatagtt ttttcatgtg gtaggtattg aataaggtac
     1801 ggatccgtca tccgcccggt aaaaatcgga ttaaatgtga aacagaaagg gaatcttgtg
     1861 tgaacggcgc ctgcccgctg cagacgttaa aacaattcta atctcccaaa agcccttgtc
     1921 tacgaaataa atcgtattac ttttacgaaa caattcgtat aaaacatttg atatgcaaca
     1981 gacactcaaa accaacagcg caagggtagc attgctcttg ctggccggcc tggtgacact
     2041 gatcatttat gccccctttc gcagccaggc gcagcaaaag cagccggcca aagcaggaca
     2101 gcagcaggat actacgcggc gaaaatccgc tgcacatggc cacacccata agacttacga
     2161 atcacttgcc gaagacctgg ccgatgccgc ccggcaactg gaaacagaaa tgaaaaaact
     2221 gcaggaggta gagctgccga agatgcaggc cgagatgcaa aaggcgctca aagagttgga
     2281 tgcggccaaa ctgaaagcgg agatcgacaa gtcggttgaa ctggcagacc tggccggcat
     2341 acaacgcgaa atagaagcca gcatgaaaca ggtgcagcaa gtggagatgc aaaaagccct
     2401 gaaagcgcaa ctcgccgcca ttgattttca aaagctgcag caggaaatgc aggaactgaa
     2461 aacaaagcac gccgccagta tagaaaaaga aatggcacag gcccgcaagg aaatggagaa
     2521 aaacagcctt aacctggaag aaaccatgaa agacgccaaa cgccagatgc aggccgccca
     2581 ggcggaaata gaacaaatga aaaaaggaat tgatgaactg atcaaagacg gcattgtaaa
     2641 aaaagacgag ccggcagaaa tagagtggga gggcgacacc ctgatcatca atggcaaacg
     2701 ccagccggcc gaagtgtcaa agaaatacga ggcttatttc aggaaaggaa agttcagttt
     2761 caacggtaag tctcccaaaa tagtgctata ggtaggcaca cccgccaccc acacccctca
     2821 caccgctcca tcagaagccg gaaagcaggt cccatccatg ctttccggtt tttcatagac
     2881 tagcatagtg ccggcagccg ttgaaaagcc gtaccgtaaa aacgatattt gaaaaaaaga
     2941 tcagggcagg ataggtgtgg tgtagatggg atgcgtattt tggactgcta ttggaggcaa
     3001 gatgaaaatt aacaacgctg ttgttgtttt gcaaacttcg gcaggttcga tggaaagacc
     3061 agcaacggcg gtttactttt agctactgct gaacaatatc aaacgagaaa accataatta
     3121 tgagattgaa aataacagac accaatttca cttcgattaa tgaatggtta tttaggttag
     3181 ttgatgaaag tgaaaatgtc tactatatca tgaatgagcc attttataga aagcataata
     3241 taaaaagtcc tgtttcaaag aaggaactcg attgttatgg caggggacaa tggattactg
     3301 tatctgttga ggaaatagac ggcaaaagag ttgtggtcaa tatgtaacta cactccttct
     3361 caacttttcc gttttcacgc cacagttggt gttatcacca actaggattg ctcgaagaga
     3421 acacaggcaa cctcaaaaat taagataaat cccaaaaatg attaagctag tcatgttaag
     3481 atcattatgg atctcactta tagtttttac cctaagttgt actgcaagca agcactttgg
     3541 tgaaaatgaa tgcaacccga attcaattcc tgattctgtt tatttcaatt atttgaaggt
     3601 tttgagaaag tatgagttgt cacagcaaat tcaaaaaaag tatgatggtg aaaatattct
     3661 cttgttctac ttccgaagta aaagtggcaa ctcgatcagc ggtggaaagc tattggtatt
     3721 tgattcaagc tttaatttaa cggacgcctc gagcctacca agttgttgtg attcatcagt
     3781 attgcagcta aaaaggccgc ttgatagcaa aactgtaaaa aaaataaacg gagttgatct
     3841 atcatcatta ataggtaata gtagtggttt ctatgaatgc aggaagccag atatacatga
     3901 actatttgaa gtagtattta caatgcaaag aggcaagatt acatcaggaa tactggttga
     3961 aggtgaatgt ttcataaagg aatttgataa atcagatcat acgctttttt tgatgcgtaa
     4021 aatccttctt tagtgaccta tccttataac gacgcttttg gtgctatctc caatagcgat
//
LOCUS       DATIQF010000035         1517 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_259129,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000035 DATIQF010000000
VERSION     DATIQF010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259129"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            30..476
                     /locus_tag="VLL95_00580"
     CDS             30..476
                     /locus_tag="VLL95_00580"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HSR37377.1"
                     /translation="MLLVEKVLALKSSSIFGNLPEQELIDIANIMEEIELAKDEVIFN
                     KGDFGDCLYIIKSGAVHIHDKDHRFATLNDGEMFGELSLLDAEPRSASATAASDCWLL
                     KLKQEPFIEVLMQNSIVLKGILSTLSKRLREEDKKAVELAKMQAGR"
     gene            complement(481..1071)
                     /locus_tag="VLL95_00585"
     CDS             complement(481..1071)
                     /locus_tag="VLL95_00585"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HSR37378.1"
                     /translation="MRPFHERIALLQKHIAGVLSKLPAHLTYHHAGHTMDVLNQSLQI
                     ARAEGVTDEWELWLLRTAALMHDIGFTKVYNGHEEKSCEIAGSLLPLYDYTPSEIGYI
                     QSLIMGTKIPQTPPDKLGSILCDADLDYLGRDDFWPIAEGLRKEWLHEKIILTQEQWM
                     QVQIRFLGAHVYFTDYSKKYREPLKQIHLKALENAV"
     gene            complement(1138..>1517)
                     /locus_tag="VLL95_00590"
     CDS             complement(1138..>1517)
                     /locus_tag="VLL95_00590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37379.1"
                     /translation="LPINFLLIQSIKKFGEFYGDSLTMEYPKGSGTEMNLVEISAALS
                     KRVLSLFETDEQGHRRLHGDYNWFYERPENRHLVLFYEYFHGDNGRGLGANHQTGWTA
                     LVAELINELITRKTYTQLQFNMG"
BASE COUNT          399 a          370 c          354 g          394 t
ORIGIN      
        1 atcggccatt agtgaaacag gagtgaatta tgttactggt agaaaaagtt ttggcattga
       61 agtcatcttc catttttggc aatcttcctg agcaggaact gatcgacatt gccaacatca
      121 tggaagaaat cgaattggca aaagatgaag tcattttcaa taaaggtgac tttggcgact
      181 gtctttacat catcaaaagc ggagccgtac atatacacga caaggaccac cgctttgcca
      241 cgctgaatga cggcgagatg tttggtgaac tttcactgct tgatgccgaa ccccgctcgg
      301 cctcggccac tgccgccagc gattgctggt tgctgaaatt gaagcaggaa ccattcattg
      361 aagtgctgat gcaaaacagt attgtactga agggcattct gagtacgctg agcaagcgcc
      421 tgcgtgaaga agacaagaaa gcggtggaac tggccaaaat gcaggcaggc cgataataat
      481 tcaaacagca ttttccaacg ccttaaggtg gatctgcttc agcggttccc tgtatttctt
      541 tgagtaatcg gtaaagtaaa catgggcgcc caggaacctg atctgcacct gcatccattg
      601 ctcctgtgtg agaatgattt tctcatgcaa ccattctttg cgcaagcctt cggcaatggg
      661 ccagaaatca tcccgtccca ggtaatccaa atccgcatcg cacaaaatgc tgcccagttt
      721 gtcgggaggc gtctgtggta ttttggtacc catgatcaac gattggatgt atccaatttc
      781 tgaaggcgta taatcataca atggcaacaa agagcccgct atttcacagc ttttttcttc
      841 atgcccgttg tacactttgg taaacccgat gtcgtgcatc aaagccgctg tgcgcaacag
      901 ccacagttcc cattcatcgg tcacaccttc ggcgcgggct atttgcaacg actggttcag
      961 cacatccatg gtgtgaccgg catgatgata agtaaggtgt gccggtagtt tcgacagcac
     1021 tcctgcaatg tgtttctgaa gcaatgcaat gcgttcgtgg aatgggcgca tggtgtagat
     1081 gtaaatccaa aatactgata ttcaacaatt tcacctcagc cttgccggaa atagttttca
     1141 acccatgttg aattgcagtt gcgtgtacgt cttcctggta atcagttcat tgatcaactc
     1201 cgccaccagt gccgtccaac ccgtttgatg gttggcgcct aatccacggc cattgtcgcc
     1261 atgaaaatat tcgtaaaaca acacgaggtg cctgttctcc gggcgttcat agaaccaatt
     1321 gtaatcgcca tgaagccggc gatgtccttg ctcatcggtt tcaaacaaac tcagcacccg
     1381 cttcgacaag gcagcggaaa tttccaccag gttcatttcg gttcctgaac ctttgggata
     1441 ctccatcgtc agcgaatcac catagaactc gccaaatttt ttgatggatt ggatcagcag
     1501 aaaattgatg ggcagcc
//
LOCUS       DATIQF010000036         1500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_137541,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000036 DATIQF010000000
VERSION     DATIQF010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137541"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1337
                     /locus_tag="VLL95_00595"
     CDS             <1..1337
                     /locus_tag="VLL95_00595"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HSR37380.1"
                     /translation="LAISLHSIGNMYLLQERYDSTLVYYSQALSLYEKQKDVRQMALM
                     YSNLGDVKQKQGLHKDAQAYFRKAIELNRSISNSRGLSQELIAYASSLLKTQDIPLAK
                     AALDSAALLLTGSRKKTDIRDYHQVMAEYYQATGNYEKAIDEFNLFVVYKDSVLNEVN
                     LEAIADMQAKYESEKKEQEIALQKAEVRRKNAWLFGISAFSVMLILLGLSYYNRFRLK
                     KEKELQAAVMRQQDLATKAVMEAEENERRRIATELHDGVGQMMSAAKMNLSAFETELT
                     MIDADKKQKLERIVSLVDESCKEVRVVSHNMMPNALLKRGLAAAVRDFIDKIDSKMLQ
                     VNLYAEGLDERLEPGLESMLYRIIQECVNNVIKHSGANHLDISLVKEEDGISLTVEDN
                     GKGFDTSRKELFEGIGLKNIISRVQFLKGTVDFDSAAGRGTLVAIHVPQQAI"
BASE COUNT          448 a          341 c          390 g          321 t
ORIGIN      
        1 acctggccat ttcacttcac agcattggca acatgtattt gcttcaggag cgatacgata
       61 gtactcttgt ttactacagc caggcgcttt cgctgtatga aaagcaaaag gatgttcgtc
      121 aaatggcgct catgtattcc aacctgggag atgtaaaaca aaaacaaggg ctccataagg
      181 acgcccaggc ttatttcagg aaagccattg agttgaaccg tagcatcagc aattccaggg
      241 gactatcgca ggaactgatt gcgtatgctt ccagcctgct caaaacccag gatattccgt
      301 tggcaaaagc ggcgctggat tctgcagccc tcctgcttac tggcagtcga aaaaagacag
      361 acatcaggga ctatcaccag gtgatggccg aatactacca ggctaccggc aattacgaaa
      421 aagccattga cgaattcaac ttgtttgtgg tttataaaga ttcggtgctg aacgaggtga
      481 acctggaagc catcgccgac atgcaggcca aatatgaaag cgagaaaaag gagcaggaaa
      541 tagccctgca aaaagcggaa gtgcgccgga aaaatgcctg gttgtttggc atcagtgcct
      601 tttcagtaat gctcattttg ctcggcctca gctattacaa tcgcttccgc ctgaaaaagg
      661 aaaaagaatt gcaggccgcg gtgatgcgcc agcaggacct tgccaccaaa gccgtgatgg
      721 aggcggaaga aaacgaacgc cggcgaattg ccaccgaact gcacgacggc gtaggccaaa
      781 tgatgagtgc tgccaaaatg aacttgtcgg ctttcgaaac agaactcacc atgattgatg
      841 ccgacaaaaa acaaaaactg gaacgcatcg taagccttgt ggatgaaagc tgcaaagaag
      901 taagggtggt gagtcacaac atgatgccca atgcactgct gaaacgcggg ctggctgcgg
      961 ctgtacgtga tttcatcgac aaaatcgaca gcaaaatgtt gcaggtaaac ctgtatgctg
     1021 aaggccttga tgaacgcctc gaaccgggac tggaaagcat gctgtaccgc ataatccagg
     1081 aatgcgtgaa caacgtgatc aaacacagtg gcgccaacca ccttgatatt tcgctggtga
     1141 aagaagaaga tgggatcagc ctgacagtgg aggacaatgg aaaaggcttt gacaccagcc
     1201 ggaaagaatt gttcgaaggc atcgggctga agaatatcat ttccagggtt cagtttttga
     1261 aaggcaccgt ggattttgac agcgcagcgg gtcggggtac cctggttgcc attcacgttc
     1321 cacaacaggc tatttaaaaa agaaataaat tgcccggcca tgatgggaaa acaggttata
     1381 aaagttttta ttgttgatga tcatcaaata gtaattgatg gactcaaatc gctgctggaa
     1441 gatcaacacg atctgcaact ggtgggcttc accacccagc cgctggaggc cgttgcgctg
//
LOCUS       DATIQF010000037         2136 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_31084, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000037 DATIQF010000000
VERSION     DATIQF010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2136
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31084"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..576
                     /locus_tag="VLL95_00600"
     CDS             <1..576
                     /locus_tag="VLL95_00600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37381.1"
                     /translation="SNDKSVPKYATHLIYLTSANNPKEIEHKIIYSILNRKPKRSDIY
                     WFVHVDTIDDPYTCEYVVDHIIPNDIIRVEFRLGFRMAPRINLLFRKVIEDLVANKEV
                     NITSRYESLERNNVVGDFQFIVMEKYLSADNELPFFESLIMKIYFAIKSISLSEEKGF
                     GLDTSYVTVEKFPLIVSPVTDLNLKRIVTED"
     gene            587..910
                     /locus_tag="VLL95_00605"
     CDS             587..910
                     /locus_tag="VLL95_00605"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HSR37382.1"
                     /translation="MQEITIQQLEEWQQAHHDFMLLDVREEHEREAGHIGGHWLPMAE
                     VIRQHETIPREKPVVVYCRKGVRSAIVIQRLEDKYGFTNLFNLAGGMSAWQIMKKQDQ
                     LSDEP"
     gene            914..1741
                     /locus_tag="VLL95_00610"
     CDS             914..1741
                     /locus_tag="VLL95_00610"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSR37383.1"
                     /translation="MPTLEAHPYILLLSISIWWWVAGGYLLLALVVYLVQERFIFKPE
                     KLPQHFEYKYDAPFRELNFEPEQGVTINGLHFYVKQPKGLILYFHGNSRSIKGWAKYA
                     RDFYRYQYDVVLVDYRGFGKSTGKRSERKMLADMQFVYETLAVNYPEDHLIVYGRSMG
                     SGFAAKIASDNQPRYLILDAPYYNFQKVVERFLPMLPSRFILRYHLRTDRWMKNVQCH
                     TYIIHGTKDWLIPIKHSEKLQELNPGRITLIRIHGGGHNNLPTFPEYHNFVRDILLY"
     gene            1759..>2136
                     /locus_tag="VLL95_00615"
     CDS             1759..>2136
                     /locus_tag="VLL95_00615"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSR37384.1"
                     /translation="MKKFLKYALLVYLVLCGLFYFYQHLFYFQPKKLDVKHALTFPVR
                     IRFQEAKIKFDANTEIDVVKFLPNTPQPKGVVLFFHGNRYNVEHYSTYAPYFTRRGYE
                     CWMPDYPGYGRSTGETSIPILKEL"
BASE COUNT          587 a          512 c          504 g          533 t
ORIGIN      
        1 agtaatgata agagtgtccc caaatatgcc actcacctca tctaccttac cagtgccaat
       61 aaccccaaag aaattgagca caagatcatt tactccattc tcaaccgtaa gccaaagcgg
      121 tccgatatct attggtttgt ccacgtagat accattgatg atccgtatac ctgcgagtat
      181 gtggtggatc atatcattcc aaacgacatc attcgtgtgg aattcagact gggcttccgc
      241 atggcacccc gtatcaattt gcttttcagg aaagtaattg aggacctggt ggccaacaaa
      301 gaagtgaaca ttaccagtcg ctatgaaagt ctggagcgca acaatgtagt aggcgatttc
      361 caattcattg taatggaaaa atacctcagt gccgataatg aactgccgtt cttcgaaagc
      421 ctgatcatga agatttattt cgccattaag tcaatcagcc tgagcgagga aaaaggtttt
      481 ggactggata cgagttatgt aaccgtggag aaattcccgt tgatcgtttc tccggtcacc
      541 gacctgaatt tgaagcgtat cgtaaccgaa gactaaaaga ggagcggtgc aggaaataac
      601 gatacagcaa ctggaggaat ggcaacaggc gcatcatgat ttcatgctgt tggatgtgcg
      661 tgaagagcac gaaagagaag ccggccatat cggaggtcat tggctgccca tggcggaagt
      721 gattcgccaa catgaaacaa tcccgaggga aaaacctgta gtggtttatt gtcgcaaagg
      781 cgttcgcagt gccatcgtca tccagcggct ggaagataaa tatggattca ccaacctgtt
      841 taacctggca ggcggaatgt cggcctggca aatcatgaaa aagcaggatc aactttcgga
      901 tgagccctag caaatgccta cattagaagc tcatccttac attttgcttc tctcaatttc
      961 aatatggtgg tgggtggctg gtggctattt gctgctggct ttggtggtat accttgttca
     1021 ggaaagattc atcttcaagc cggagaaact gccccagcac ttcgaataca agtacgacgc
     1081 tcccttccgg gaattgaatt ttgaaccaga gcagggagtc accatcaacg ggttgcattt
     1141 ttatgtgaaa cagcccaagg ggctcatcct gtatttccac ggcaacagcc gaagcataaa
     1201 aggatgggca aaatatgccc gtgattttta ccgctaccaa tacgacgttg tgttggtgga
     1261 ttaccgtggc tttggcaaaa gcaccggcaa gcgcagcgag agaaaaatgc tggccgacat
     1321 gcagtttgta tacgaaaccc tggcggttaa ttacccggag gatcacctga ttgtgtatgg
     1381 ccgaagcatg ggcagtggct ttgccgcaaa aattgccagc gacaaccaac cccgatacct
     1441 gattcttgat gccccgtact acaactttca aaaagtggtg gagcgcttcc tgcccatgtt
     1501 gcccagccgg ttcattttga ggtatcacct gcgtaccgac cgctggatga aaaatgtgca
     1561 atgccacact tacatcattc acggcaccaa agactggttg atccccatca aacacagcga
     1621 gaaactacag gaactgaacc cgggaaggat cacgctgata cgcattcacg gcggcgggca
     1681 caacaacttg cccactttcc ctgaatacca caattttgtc cgcgatattt tgctctacta
     1741 accattcaac aacaagacgt gaagaagttc ctgaaatatg ctttgctcgt gtacctggtg
     1801 ctttgcggct tgttctattt ctaccagcat ttattctatt tccagcccaa aaaactggat
     1861 gtgaaacatg ccctcacttt cccggtgcgc attcgtttcc aggaggccaa aataaaattt
     1921 gatgctaaca ctgaaattga tgtggtgaag tttttgccga acactcccca gccaaagggt
     1981 gtcgtgttgt tttttcacgg caaccgatac aatgtagagc actattccac ctatgcacct
     2041 tatttcaccc ggcggggtta tgaatgctgg atgcccgatt acccgggcta tggccggtct
     2101 accggcgaaa cgagtattcc cattctgaag gagttg
//
LOCUS       DATIQF010000038         4525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_76706, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000038 DATIQF010000000
VERSION     DATIQF010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4525
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76706"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..310)
                     /locus_tag="VLL95_00620"
     CDS             complement(<1..310)
                     /locus_tag="VLL95_00620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37385.1"
                     /translation="MKLRNTIWLISLPTLLMAQQPADSNKVRFTIDGYIKNMPSLSFT
                     SSFDTTRTLNLFHHRMRTKLELPGNLSLKMEFRNRFFSGSQLQDGKSFGASLDRDDGL
                     I"
     gene            complement(297..1013)
                     /locus_tag="VLL95_00625"
     CDS             complement(297..1013)
                     /locus_tag="VLL95_00625"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR37386.1"
                     /translation="MATTVIDAHNVSKTYSNGPIEVKAIQHVHLHIEKGEFVALVGPS
                     GSGKTTLLNMLGGLDAPTTGNVLVNGADITSMTENKLIDFRLHNIGFVFQSFNLIPVL
                     TARENIEFIMLLQKRSKEERKKRTDELLVSIGLQDKANAKPGELSGGQQQRVAVARAL
                     ASYPQFVLADEPTANLDSAAAANLLDIMEKLNREEQITFIFSTHDQRVIQRARRVITL
                     VDGAVSNDTLQKPIEHLETS"
     gene            complement(1018..2235)
                     /locus_tag="VLL95_00630"
     CDS             complement(1018..2235)
                     /locus_tag="VLL95_00630"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSR37387.1"
                     /translation="MLLKIAWRNIWRNPLRSSVIILSITLGIWAGGFILAFVGGMMNE
                     QISTAVSRQLSHIQIHHSEYKQEEDLKYFIPKGNEVITKLRQLPDAKAVSGRIRVNAM
                     ASTAHGSAGVTLFGIDPEDEAAVTGLSNHLSEGKYFDTGKRNMVIIGKKLKEKLQVTT
                     GQKVVFTFQNSSDELTAAALRVAAVYSGNNSVVEETIVYVPSNELATVAGISTTNVHE
                     IAVLLSGNDQLETAAASIRKNYPALQVETWKQLSPELRLVIDSFNEYMTIIMGLILMA
                     LVFGIINTMLMAVLERQHELGVLMAVGMNRSKVFFMIVFETMLMTFAACAIGLPASWA
                     TIAYFGKHGIDLSNWSQGLAQYGIRTMVYPALELQYFIKIGAMSIASSMLAAIYPARK
                     SLQLKPVEAIRKI"
     gene            complement(2246..3466)
                     /locus_tag="VLL95_00635"
     CDS             complement(2246..3466)
                     /locus_tag="VLL95_00635"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR37388.1"
                     /translation="MTYLKLAWRNIWRNKRRTIITISAVLFAVLLCTLMRSLLEGVYT
                     HMVDNVAGFSTGYLQVHKKGYWQEKNIDNSMSFNDSLLHTITNTDDVTAVVPRIETFA
                     LASTGSLTTGVVLTGTDPLRENTITRLQSKLVEGAMLEANDRSVLIAAGLAQKLKLKV
                     NDTLVLMTQGYHAASANGLYPVKGIVKIGSPELNKAMVYLPLAEAQNLLSLDQHISGI
                     SIMIRNSNQLNQVNQSLQGQLDTTAYEVMDWKEMLPELDQMIEADGSGHRIMLAVLYV
                     MISFGVFSTVLMMLAERKHEFGIMIAIGMQKHKVLKIVIAETLLLLALGIGLGTLAAW
                     PVLQYFYVHPIQLSGELKTVYENYGFEAIIPVSKDFIVFWSQVKAVAVIGLFVLIYPV
                     IHLSRFKLMQAIRN"
     gene            complement(3463..4209)
                     /locus_tag="VLL95_00640"
     CDS             complement(3463..4209)
                     /locus_tag="VLL95_00640"
                     /inference="COORDINATES: protein motif:HMM:NF028441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA];
                     GO_process: GO:0044874 - lipoprotein localization to outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein-sorting protein"
                     /protein_id="HSR37389.1"
                     /translation="MSRLLFIVFSLLASGSLSGQLPAKEIVRKAEEKVRGTTASASFI
                     VRIVRPSWQREMEMRSWSKGNQFAMIYVDGPARDKGTVFLKRKKEVWNWLPTIERTVK
                     LPPSMMSQSWMGTDFTNDDLVKEFSIVEDYDQVLTGEEKIGDRLCYVIKMTPLPQAAV
                     VWGSIRLWIDKQEFMQLKGEFYDETGTLVNRMTASEIKILGGKLLPSVIEMIPVDKPG
                     NKTVMLYKQIAFDMPIDDSFFSTDNMKKLK"
BASE COUNT         1050 a         1109 c         1117 g         1249 t
ORIGIN      
        1 cgatcaagcc gtcatcacgg tccagtgatg cgccaaatga tttgccgtcc tgtaactggc
       61 tgcccgaaaa gaagcggttt ctgaattcca ttttcaggct cagattgccg ggaagctcca
      121 gttttgtccg catgcggtgg tgaaaaaggt tgagcgttct ggtggtatca aaactggatg
      181 tgaaagaaag cgagggcatg ttttttatgt aaccatcgat agtgaatcgc accttgttgg
      241 aatcagcagg ttgctgtgcc atcaataatg tggggagact tatcaaccat atggtgttac
      301 gaagtttcaa ggtgttcaat cggtttttga agggtgtcgt ttgacacagc accgtccacc
      361 agggttatta ctctgcgtgc ccgttgaatc acccgttggt cgtgtgtaga aaaaatgaaa
      421 gtgatctgtt cttccctgtt cagtttttcc atgatgtcga gcaaattggc tgccgccgcg
      481 gaatcaagat tagcagtagg ctcatcggcc agcacaaatt gcggatagga ggccagcgcc
      541 cttgccaccg ccacccgttg ctgctgcccg ccactcagtt cgcccggctt ggcattggct
      601 ttgtcctgca ggcctatcga caccagcaat tcatcagtcc ttttctttct ttcttccttc
      661 gatctttttt gcagcagcat gatgaattca atattctccc ttgccgtgag tacaggtatg
      721 aggttgaagg attgaaatac gaacccgatg ttgtgcaagc gaaaatcgat gagtttgttt
      781 tcggtcatgg aagtaatgtc tgcaccattc accagtacat tgccagtggt gggcgcatca
      841 agtcctccca gcatattgag caatgtggtt ttacccgaac ctgacggtcc gaccaacgcc
      901 acaaattctc ccttttcaat gtgcaggtgc acgtgttgaa tggcctttac ttcgatgggg
      961 ccgttgctgt aggttttact tacgttgtgc gcatcaatga ctgtagttgc catacactca
     1021 aatttttctg attgcttcta ccggtttcag ttgcaatgat tttcgggcgg ggtaaatagc
     1081 ggccagcatt gacgaggcaa tggacatggc tccgatcttg atgaagtatt gcagttccag
     1141 cgccgggtac accatggttc tgatgccata ctgcgccagg ccttgcgacc agttgctcag
     1201 gtcgatgcca tgcttgccga aataagcgat ggtggcccag ctggcgggca ggccaattgc
     1261 gcaggctgcg aaagtcatga gcatggtttc aaaaacgatc atgaagaaaa ccttgctgcg
     1321 gttcattccc accgccatca gcacgcccaa ttcatgttgt cgttccagca cagccatcag
     1381 catggtattg atgatgccaa aaaccagcgc catcagaatg agccccatga tgatggtcat
     1441 gtactcattg aatgagtcaa tcaccaacct tagttctggc gacaattgtt tccacgtttc
     1501 cacctgtagt gccgggtagt tttttctgat gctggcggcc gcggtttcca attgatcgtt
     1561 gccggaaagc aggacagcga tctcgtgaac atttgtcgta gaaataccgg ccactgttgc
     1621 caattcgttg gacggaacgt aaacaatggt ttcttccacc acgctgttat tgccgctgta
     1681 cacagcagca acccgaagcg cagctgccgt cagttcatcg ctgctgttct gaaaagtgaa
     1741 aaccactttt tgaccagtgg tcacttgcag tttttctttc agctttttac cgatgatcac
     1801 catatttctt ttaccggtat cgaaatattt tccttcactg aggtggttgc tcagaccggt
     1861 tacggcagcc tcgtcttccg gatcaattcc aaacaaagtg acaccggcag atccgtgtgc
     1921 agtggaggcc atggcattta cccgtatgcg gccggaaaca gcttttgcat caggcagttg
     1981 cctcagcttt gttatcactt cgttgccctt gggtatgaag tatttgaggt cttcttcctg
     2041 cttgtactcg ctgtgatgga tctgtatgtg tgagagttgc ctgctgacag cggtggagat
     2101 ttgctcgttc atcatgccgc ctacaaaagc gagtatgaag ccgcctgccc aaattcctaa
     2161 cgtgatcgaa aggatgatga ccgagctccg caacgggttg cgccaaatgt ttcgccaggc
     2221 aattttgagt aacatggtat gcgggttaat tgcgtattgc ttgcatgagt ttgaatcgtg
     2281 agagatgaat gacagggtag atcagtacaa aaaggccaat gactgcgaca gcttttacct
     2341 gcgaccagaa aacaatgaag tctttgctca ccggtatgat ggcttcaaac ccgtagttct
     2401 cgtaaactgt tttcagttca ccgcttaact ggatggggtg cacataaaaa tattggagca
     2461 ccggccatgc tgccagtgtg cccaggccaa tgcccagtgc cagcagcaac aaggtttcag
     2521 caatcacgat cttaagcact ttatgctttt gcatgccaat ggcgatcatg atgccgaatt
     2581 catgttttct ttcagccagc atcatgagca cagtgctgaa cacaccaaaa cttatcatta
     2641 catacaacac tgccagcata atgcggtgac ccgaaccatc cgcctcgatc atctggtcca
     2701 gttcaggcag catttctttc caatccatta cttcataagc ggtggtatcc aattgccctt
     2761 gcaatgactg attcacctgg ttgagctggt tgctattcct gatcataatg ctgatgccgg
     2821 atatatgctg gtcgagactg agcaggtttt gcgcctctgc caacggcagg tacaccatcg
     2881 ctttgttgag ttcgggtgag ccaatcttca cgatgccttt gacagggtag agaccattgg
     2941 cgctggcggc gtgataacct tgggtcatga gtaccagtgt gtcatttact ttcagtttca
     3001 gtttttgcgc aaggcctgcg gcaatcaata ctgaccgatc gtttgcctcc agcatggccc
     3061 cctctaccag cttcgactgc aagcgagtaa tggtgttttc gcgaaggggg tcggtgccgg
     3121 tcagcaccac gcctgtggta agcgatccgg tggaggccag tgcgaaagtt tcgatgcggg
     3181 gcacaacggc ggttacgtca tcggtgttgg taatggtgtg caacaaactg tcgttgaatg
     3241 acatgctgtt gtcaatgttc ttctcctgcc agtatccctt tttgtgtacc tgcaggtagc
     3301 cggtcgaaaa gccggccaca ttgtctacca tgtgcgtgta caccccttcc agcaaactgc
     3361 gcatgagtgt gcacagcagt accgcaaaca acaccgcaga aatggtgatg atggttctgc
     3421 gtttgttgcg ccaaatattc cgccaggcca gcttcaggta ggtcatttca gttttttcat
     3481 gttgtcggta ctgaagaagg aatcatcgat gggcatatca aacgcaatct gtttgtagag
     3541 cattactgtt ttgttgccgg gcttgtcaac cgggatcatt tcaataactg aaggaagcaa
     3601 cttgcctccc agtattttga tttccgaagc ggtcatgcga ttgacgagtg ttcctgtctc
     3661 atcgtagaac tcacctttca gttgcataaa ctcctgtttg tcgatccaaa gcctgatgct
     3721 gccccatact actgcagcct gcggaagcgg ggtcatcttg atgacatagc ataacctgtc
     3781 gcctatcttt tcttcgccgg tcaaaacctg gtcataatcc tctacaatag aaaattcttt
     3841 cacgaggtca tcgttggtaa aatcggtacc catccagctt tggctcatca tgctgggcgg
     3901 cagtttcacc gttctttcaa tggtgggaag ccagttccat acttcttttt ttcttttcag
     3961 gaataccgtt cccttgtccc gggctgggcc atccacatag atcatggcga actggttgcc
     4021 tttggaccag ctgcgcattt ccatttcacg ttgccaggat ggccgaacga tgcgaacaat
     4081 gaaactggca ctagcagtag tgcctctcac tttctcctcc gccttacgta ctatttcttt
     4141 ggcaggaagc tggcctgaca gtgagccgga ggccagtaat gaaaacacta tgaagagtag
     4201 acgtgacatg gtctgccacc acagatttgt gacctaaaag gtagggcggc atcatgaggt
     4261 aaaccatgac ttcgggcata ccatcggttt tgtgtggcat atgcggttgg ggcctgggat
     4321 aagccagttt ttaccagcaa gagcataaaa aaactgcacc cgaaaggcgc agttttttta
     4381 aaacaccaca agctcagtaa atcaattgga ttattgattc accacggcat tgtgccggtt
     4441 gatgtaaatg gttttatcac ctttcataac cttggcaatg ccttcttcga agttgtcggc
     4501 gaaatggtac ataaatggaa tggcc
//
LOCUS       DATIQF010000039         1547 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_61547, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000039 DATIQF010000000
VERSION     DATIQF010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61547"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1547)
                     /locus_tag="VLL95_00645"
     CDS             complement(<1..>1547)
                     /locus_tag="VLL95_00645"
                     /inference="COORDINATES: protein motif:HMM:NF036933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HSR37390.1"
                     /translation="VYQVQFAKDQDISGSLVRSIASASGGCKPIAVFSATTWSAFDCT
                     GASGGDNLLQQLFPTRAFGKSFLTAPFIKKVYDIIRVFVLDPTTVVKKTENGVTTTLG
                     GLVGNSYYEFTTNKPTQIDADKPVSVVHYMTSQTCGNSTNSDPEMVILNPVEQTINNI
                     TLFSAHRSWVPINQSNVNECYLNIIIKSNAASSFRINGALPLGVFTPIPGTAFSYLQA
                     DVTALSQTNPIQTLTADSSFIAIAYGYGNVESYGYNAGTNVKDLFQFISIKNEYATVN
                     FPATCINAPFKFSITFPYQPTKIDWKFYGKFPDVSVNSPVADSSYIVEGRTIYRYSLP
                     GFYSYNATGTNKVTVVANNPTSDGCSGEQQIDYDVEVFQKPSANFTWQHTGCTTDSVK
                     FIDNSNGLGRTINSFKWEFGDNTIDSVKNPVKKYNSAGSYIVKERIITDIGCLADTTK
                     TVQVTVPPIAKFGVSAITCVGNNIQFTDSSSVGAGGTITKWYWDFGNGRKDTMSANTT
                     RVIAYPT"
BASE COUNT          412 a          341 c          363 g          431 t
ORIGIN      
        1 agtcggatag gctattacac gggtagtgtt ggcagacatg gtatcctttc tgccattccc
       61 aaaatcccag taccatttgg taatggtccc accggcacct acggaagatg aatcggtaaa
      121 ctgaatatta tttcccacac aggtgatagc cgaaacgcca aacttggcaa ttggcggcac
      181 cgttacctgt acagtctttg ttgtatctgc caggcagccg atatctgtaa tgatcctctc
      241 ttttacaata tagctgccag cgctattgta tttcttcacc gggttcttta cagagtcaat
      301 tgtattgtca ccaaattccc atttgaatga attgatggtt ctccccaacc cattggagtt
      361 gtcaatgaat tttacagaat cggtggtgca ccccgtgtgt tgccaggtga aattggcgga
      421 aggcttctgg aatacttcaa cgtcgtaatc aatttgctgc tccccagaac atccatccga
      481 agtagggttg tttgcaacaa cggtaacctt attagtgcct gtagcattat aggaataaaa
      541 cccaggcaaa ctgtagcggt aaatggttct accttccaca atgtatgagc tatcagctac
      601 gggactgttg acgcttacat ctggaaattt gccatagaat ttccagtcaa tttttgtggg
      661 ctgatatggg aacgtgatgg agaacttaaa aggtgcattg atacaggtgg caggaaaatt
      721 caccgttgca tactcatttt taatggaaat gaactggaac agatccttca catttgttcc
      781 cgcattgtat ccgtacgatt ccacattgcc gtaaccgtat gcaatggcaa taaaactgga
      841 atcagctgtc agggtttgta tcggattggt ttgagaaagt gcagttacat cagcctgcag
      901 gtaagaaaac gcagtgccgg gaatgggtgt aaacactccc aatggtaatg caccatttat
      961 gcggaaagaa ctggcagcgt ttgatttgat aatgatattg aggtagcact catttacatt
     1021 gctttgatta atcggaaccc aactgcggtg cgcactgaac agcgtaatgt tgttgatggt
     1081 ttgttccacc gggttcaaaa tcaccatctc cggatctgaa ttcgtggagt tgccgcatgt
     1141 ctggctggtc atgtaatgta ccacggaaac aggcttatca gcatcaattt gtgttggctt
     1201 gttggtggta aactcatagt aactgttgcc aacaaggccc cccaatgtgg tggtaacccc
     1261 gttttcggtc ttttttacta ccgtggttgg atccaataca aatacacgga taatgtcgta
     1321 gacttttttg ataaagggtg ccgtcaaaaa actcttgcca aatgcccggg tgggaaataa
     1381 ttgctgcaaa aggttgtcgc cgccactggc gccagtgcaa tcaaaggcag accaggtggt
     1441 ggctgaaaac acggcaatcg gcttacatcc tccgctggca ctggcaatcg aacgtaccaa
     1501 agaccccgaa atatcctggt ctttggcaaa ctgtacctgg tagacat
//
LOCUS       DATIQF010000040         1799 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_15954, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000040 DATIQF010000000
VERSION     DATIQF010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1799
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15954"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            156..1580
                     /locus_tag="VLL95_00650"
     CDS             156..1580
                     /locus_tag="VLL95_00650"
                     /inference="COORDINATES: protein motif:HMM:TIGR00836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HSR37391.1"
                     /translation="MKRIGTKEALPFLSLAALAVAAIFVPVLPNFDDGGKYSAADISW
                     IIVATALVFLMTPGLAFFYGGMVHRKNVISTMIKSVVAAGVVSVIWVTFGYSLAFGDS
                     IGGLIGSPSTHLFFKGVNSGEPWSLAPTIPKTLFALFQLMFAIITPGLVVGAVAERIR
                     FTSYILFTVLFSILVYAPLAHWSWHPEGFLFKWGALDFAGGTVVHISAGCAALAGAMV
                     LKRRQVHINKEEIPPANVPYVLIGTGLLWFGWFGFNAGSALGANALAVSAFATTNTAA
                     AAAGLSWMFFDVLKGKKPFVMGFCIGAVVGLVAITPGAGFVGIPQSIFIGVVAAIISN
                     AAVYYKSKSKLDDTLDVFPCHGLGGMVGMLLTGIFATKAVNGAGNDGLFYGNAAFFFT
                     QLKAMAIAVGYSFVVSYAIFKFINFILPLRVSSEEEEMGLDASQHNEKYVQGTLLVHT
                     RENGKMRDREVEVMIEKGTAEEVI"
BASE COUNT          415 a          473 c          455 g          456 t
ORIGIN      
        1 gtttttcaat aaattaatgc cattttttcc attatctcca tacatattat gttttattct
       61 atgtgtgtaa tatagcagca ttgggcagtt tttttacgaa ggataggcct attattgcta
      121 agcaaacaac caatcgatca ccaaactgct ctgttatgaa aagaatcgga acaaaagaag
      181 ccttaccgtt tctatcgctg gctgcccttg ccgtggcggc catttttgtg cccgtactgc
      241 ccaattttga cgatggagga aaatacagcg cggctgatat ttcctggatc attgtggcaa
      301 cggccctggt attcctgatg acgcccggcc tcgccttctt ttacgggggc atggttcacc
      361 gcaagaatgt catttccacg atgatcaaga gcgtggtagc cgctggtgtg gtgagtgtga
      421 tctgggtaac cttcggatac agcctggcct tcggcgattc gatcggcggc cttatcggaa
      481 gcccctccac ccacctgttt ttcaaaggcg tgaactccgg ggaaccctgg agcctggcgc
      541 caaccatccc gaaaacgctc tttgcgcttt tccagctgat gttcgccatc attacgcccg
      601 ggctggttgt aggtgctgtt gccgaaagga tccgttttac ctcttatatt cttttcacgg
      661 tattgttcag catcctggta tatgccccgc tggcgcactg gagctggcac ccggaaggtt
      721 tcctctttaa atggggcgcc cttgactttg ccggtggcac cgtcgtgcat atttcagctg
      781 gttgcgccgc gctcgcgggc gccatggtgc tcaagcgtcg ccaggtgcat atcaacaagg
      841 aagaaattcc gcctgcaaac gttccgtatg tgctgatcgg caccggcctg ctgtggttcg
      901 gttggtttgg tttcaacgcg ggctccgccc tgggcgcaaa tgccctggcc gtatccgcct
      961 tcgccaccac aaataccgcc gccgctgccg ccggtctttc ctggatgttt ttcgatgtac
     1021 tcaaaggcaa aaagcctttc gtgatgggat tctgcatcgg tgctgttgta ggccttgtcg
     1081 ccataacccc tggtgccggc ttcgtaggca tcccgcagag cattttcatc ggcgtcgtgg
     1141 cagcgatcat ctccaatgcg gctgtctact ataaaagcaa atcgaaattg gacgatacgc
     1201 tggacgtatt cccctgccac ggactaggtg gcatggttgg catgctcctg accggcatct
     1261 tcgccaccaa ggctgtaaac ggagccggca acgacggcct cttctacggc aacgcagcct
     1321 tcttcttcac gcagttgaag gcgatggcca ttgccgtcgg atacagcttc gtggtatcat
     1381 acgccatttt caaattcatc aatttcatcc ttccgctgcg cgtttcctcc gaagaggaag
     1441 aaatgggcct cgatgccagc cagcacaacg aaaagtatgt acagggcact ttacttgtgc
     1501 atacccggga gaatggaaaa atgagggaca gggaagtgga agtgatgata gagaaaggta
     1561 cagcagaaga agtcatatag gactagtata gatttcttcg ccgtaccctt catttcataa
     1621 aaaaaaacca acacaatgtt acgaaaattc tttgtaatgg ccaccgccat ggccacaacg
     1681 ggcgcggtat gcgcacagga ggcggcaaca gttgaagaga aaaaagcaac gacaaccata
     1741 agcggttttg cagatgtata ctacaggtat gacttcagta aaaacccatc aaacaaccg
//
LOCUS       DATIQF010000041         1845 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_259240,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000041 DATIQF010000000
VERSION     DATIQF010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1845)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1845)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1845
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259240"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1771
                     /locus_tag="VLL95_00655"
     CDS             <1..1771
                     /locus_tag="VLL95_00655"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dehydrogenase E1 component subunit alpha/beta"
                     /protein_id="HSR37392.1"
                     /translation="TGRDMPLEKLFKQWQGNKDGYSKGRERSFHFGTAEHHICGMISH
                     LGPQLALADGVALAHKLRGEEKVAVAFSGDGGTSEGDFHEALNVAAVWDLPVIFIIEN
                     NGYGLSTPVNEQFKCQQLSDKAKGYGMEGITIDGNNILAVIDTLQGVRDYCIKNQKPY
                     LIECMTFRMRGHEEASGTKYVPTHLFEEWKKRDPVNNFEFYLQQTGVLSDAALESIKA
                     ETKSYIESELARAYDAMEMMPDEDEELQDVYAPSKIFPVPAVAPTSLIADESNARFID
                     GIRDGLYQSMQVHPNLVLIGQDIAEYGGAFKITEGFMEQFGKSRVRNTPLCESAILGS
                     ALGLSLEGFKSMVEMQFADFVSVGLNQIVNNLAKIYYRWGQNADVVVRMPTGGGVGAG
                     PFHSQSNEAWFTHVPGLKVVYPSSPADAKGLMIAAINDPNPVMFFEHKALYRSVSGHV
                     PAHYYEIEIGKAKLVQEGEDITVITYGSGVHWAQEYQQRHMNVSMHILDLRSLLPLDY
                     DAIKEAVAATGKVLVLHEDTLFGGIGGEIRAWINEHCFEMMDAPVVRCASMDTPVPFN
                     IELEQQFLAKSRLDAAVKKLMRY"
BASE COUNT          483 a          427 c          521 g          414 t
ORIGIN      
        1 caccggccgt gatatgccgt tggaaaaatt gttcaagcaa tggcagggca ataaagacgg
       61 atacagcaag ggccgcgaac gcagttttca tttcggcact gcagaacacc acatttgcgg
      121 catgatcagc cacctcggtc cccagctggc actggcagat ggcgtggcct tggcgcacaa
      181 gcttcgtggc gaagaaaaag tggcggtggc ctttagtggc gacggcggca ccagcgaagg
      241 cgattttcat gaagccctga atgtggcagc cgtatgggat ttgcccgtca tcttcattat
      301 tgaaaacaac gggtatggat tgagcacgcc ggtgaatgaa caattcaaat gccagcaact
      361 gagcgacaaa gccaaaggct acggcatgga agggattacc attgatggca acaatattct
      421 tgcagtaatt gatacactgc aaggcgttcg cgactactgt attaaaaacc aaaagccgta
      481 tctcatcgaa tgcatgacgt tcaggatgcg gggtcatgaa gaagcgagtg gcaccaaata
      541 tgtaccgacg catttgtttg aggaatggaa gaagcgtgac ccggtaaaca attttgaatt
      601 ctacctgcag caaaccggtg tgctgagcga tgccgcattg gaatccatca aggcagaaac
      661 aaaaagctac atcgaaagcg aactggcccg ggcttatgat gccatggaaa tgatgccaga
      721 tgaagacgaa gaactgcagg atgtttacgc tccgtcaaag atcttcccgg tgccggctgt
      781 ggcgcccacc tcactgatag ccgacgaaag caatgcccgt ttcattgatg gcatccgcga
      841 tggattgtac cagagcatgc aggtgcatcc caacctggtg ctgattggac aggatattgc
      901 tgaatatggt ggcgccttca agatcaccga aggatttatg gagcagtttg ggaaaagccg
      961 ggtgcgcaat acgccccttt gcgaaagtgc catcctgggt tcggcattgg gtttgtcgtt
     1021 ggaaggattc aagagcatgg tggaaatgca gtttgccgat tttgtttcgg taggcttgaa
     1081 ccagatcgtg aacaacctcg ccaagatcta ttaccgctgg gggcaaaatg ccgatgtggt
     1141 ggtgcgcatg cctaccggtg gcggtgtagg agcagggccc ttccacagcc aaagcaacga
     1201 agcatggttt acgcatgtgc ccggtttgaa agtggtatat ccctcttcgc cagccgatgc
     1261 caaaggattg atgattgccg ccatcaacga tcccaacccc gtgatgttct ttgagcacaa
     1321 ggcactgtac cgcagtgtga gcggtcatgt gccggcccat tattatgaaa ttgaaattgg
     1381 caaggcaaaa ctggtacagg aaggggagga tatcacagta attacctacg gcagtggggt
     1441 acattgggcg caggaatacc agcagcgcca catgaacgta tcaatgcaca ttttggattt
     1501 gcgcagcctg ctgccgcttg attatgatgc catcaaagaa gccgtggccg ccactggcaa
     1561 agttttggtt ctgcacgagg ataccttgtt tggcggcatc ggcggcgaga tcagagcctg
     1621 gatcaatgaa cattgttttg aaatgatgga tgcgccggtg gtgcgttgtg cctcgatgga
     1681 tacgccggtg cctttcaata ttgaactcga acaacaattc ctcgccaaaa gccggctgga
     1741 tgcggcggtg aagaagttga tgcggtatta acaatcgtcc tcgtctccga caaggactgg
     1801 cgacagtaac taatcatgta ggggtacttc ttcaataatt agtaa
//
LOCUS       DATIQF010000042         1621 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_198440,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000042 DATIQF010000000
VERSION     DATIQF010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198440"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1621
                     /locus_tag="VLL95_00660"
     CDS             <1..>1621
                     /locus_tag="VLL95_00660"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HSR37393.1"
                     /translation="LALGLTPGDFTPEGADKVAILSTNRPEWIFTDIACQQAGLILCP
                     IYPTTNPRELEFIFNDASIKCVFAGSEELYEKVKSVMPHTPTVQHVFTFDHVKEAEHW
                     TQLLQRADVPSRARLQHVKEDIEPSSLATIIYTSGTTGTPKGVMLTHQNILSNVIQSK
                     RSFPFEDKPGQKVLSFLPLNHIFERMVTYIYLLSGNSIYYAESLDTIGENLKEVQPIG
                     FTTVPRLLEKVFEKIMEKGHEQTGIKKKLFFWAVELGLQYDNLKSKGPLYQLQLNLAN
                     KVVFSKWREGLGGNIEFIITGGAACQERLLRVFNAGRIPVFEGYGPTENSPVITVNRN
                     MPGQSKYGTVGPVIDGQEVKLAEDGEIMVKGPSVMQGYYKRPDLTAETIKDGWLLTGD
                     IGIWEEYNGVKFLKITDRKKELFKTSGGKYVAPQPLENKLKESPFIEQVMVVGAERKF
                     VGALIVPGFPTLREWMRKNNIPFTSEAEAIRHPQVLELYQKLVESFNVFFNHVEQVKK
                     FELLPKEWSIDSGEMTPTLKIKRKVVMEKYKD"
BASE COUNT          469 a          400 c          408 g          344 t
ORIGIN      
        1 ctggcccttg gtcttacgcc cggcgacttc acccccgaag gcgcggataa ggtggccatc
       61 ctcagtacca accggcccga atggatcttc acagacattg cctgccagca ggcgggtctc
      121 atcctttgcc ccatataccc caccaccaac ccccgtgagc tggaattcat tttcaacgat
      181 gcatccatca aatgtgtatt tgccggttcg gaagagctct acgaaaaagt gaaaagtgta
      241 atgccgcaca cgccgaccgt gcagcatgtg ttcactttcg accatgtaaa agaagctgaa
      301 cactggacgc aattgctgca acgggcagat gtaccatcga gagcaagact gcagcacgtg
      361 aaagaggata ttgaaccctc gtcattggcc accatcattt ataccagtgg caccaccggc
      421 accccaaaag gagtgatgct tacgcatcag aacattctca gcaatgtcat ccagtccaag
      481 cgcagttttc cttttgaaga caagcctggc caaaaggtac tgagctttct gccactcaac
      541 cacatcttcg aacgcatggt cacttatatc tatttgctga gtggcaacag catttactat
      601 gcagaaagcc ttgataccat tggcgaaaac ctgaaagagg tgcagcccat aggttttacc
      661 acggtgcccc gcctgctgga aaaagtgttt gagaaaataa tggagaaggg gcatgaacaa
      721 accggcatca aaaagaaact ctttttctgg gcggtggagt tgggcttgca gtacgacaac
      781 ctgaaaagca aaggtccgct ttatcaatta caactgaatt tggccaacaa agtggtgttc
      841 agcaaatggc gtgaaggcct gggtggcaat attgaattca tcataaccgg tggcgccgcc
      901 tgccaggagc ggttgctgcg tgttttcaat gcagggagaa ttccggtgtt cgaaggatac
      961 ggccccaccg aaaacagccc ggtgattacc gtaaacagga acatgcccgg ccagagtaaa
     1021 tacggtaccg taggaccagt gattgacggc caggaagtga agctggccga ggatggtgaa
     1081 atcatggtga aaggtcccag cgtaatgcag ggctattaca aacggcccga ccttacggca
     1141 gaaaccatca aggatggttg gctgctcacc ggcgatatcg gcatttggga agaatacaat
     1201 ggcgtgaagt ttctcaagat caccgaccgt aagaaagagc tgttcaaaac cagcggtggc
     1261 aagtatgtag cgccgcaacc tttggaaaac aaactgaaag aatcaccatt cattgagcag
     1321 gtgatggtag tgggggcaga acgcaaattc gtaggcgctc tcattgtgcc cggcttcccc
     1381 accttacgtg aatggatgcg caaaaacaat atccccttca cttcagaagc agaagccatc
     1441 cggcatccgc aagtgctcga actctatcag aagctggtgg aatctttcaa cgtattcttt
     1501 aaccatgtgg aacaggtcaa aaaatttgaa ctgctgccaa aagagtggag tatcgatagc
     1561 ggtgaaatga caccgacttt aaaaatcaaa cggaaagtgg tcatggaaaa atacaaggat
     1621 g
//
LOCUS       DATIQF010000043         1510 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_31198, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000043 DATIQF010000000
VERSION     DATIQF010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31198"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..937
                     /locus_tag="VLL95_00665"
     CDS             <1..937
                     /locus_tag="VLL95_00665"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR37394.1"
                     /translation="EVGVIVEFVLYINMLTFPVSAIGWVASMIQRAAASQKRLNEFLQ
                     LQPTIENPETAAAAPSPQGEIVFENVTFIYPHTGITAIRHFNLRIAPGQKVAVIGKTG
                     SGKSTIANLLLRFYDVNEGRVLLDGEEVKHYDLAELRRRISYVPQDVFLFSDTVAANI
                     RFGHDFAPDEAVQQVASQAAVANEIALFGQQYFTMVGERGVTLSGGQKQRLSIARALL
                     KPAPVIIFDDCLSAVDSKTEKEILQHLNESLINKTAIIITHRIFSLLEFDQIILLEDG
                     EILEQGTHQSLMHLNGEYAELYRQQQMDMAGVEPQ"
BASE COUNT          417 a          355 c          403 g          335 t
ORIGIN      
        1 cgaggtgggg gtaatcgtgg agtttgtgtt gtacatcaac atgctcacct tcccggtcag
       61 tgccattggc tgggttgcca gtatgataca acgtgccgct gcttcgcaaa aacgcttgaa
      121 tgaattcctg caactgcaac ccactattga aaatccggaa acggcagccg cagcgccatc
      181 gccccaaggc gaaatcgtat ttgaaaatgt caccttcatc tatccccaca ctggcattac
      241 tgccattcgc catttcaacc tgcgcatagc acccggccaa aaggtggcgg tcattgggaa
      301 gaccggcagt ggaaaatcga ccatcgccaa tttgttgttg cgcttttacg atgtgaacga
      361 gggacgtgtt ttactcgatg gcgaggaagt aaaacattat gacctggcag aattgcgccg
      421 ccgcatcagt tatgtgccgc aggatgtgtt tttgttcagc gatactgtgg ccgccaatat
      481 ccgcttcggc cacgattttg cccccgatga agcggtgcag caagtggcgt cacaggcggc
      541 ggtagccaat gagatcgcct tgtttggcca acagtacttt accatggtag gagagcgggg
      601 cgtaaccctg agtggtggcc agaaacaacg cttgtccatt gcccgggcat tgctgaaacc
      661 tgctcccgtc atcattttcg acgattgcct gagcgccgtg gattctaaaa ccgaaaagga
      721 gatcctgcaa cacctgaacg aatcattgat caataagact gccattatca ttacccatcg
      781 cattttcagc ctgctggaat ttgaccagat cattttgctg gaagatggcg aaatactgga
      841 gcagggtacg caccaatcat tgatgcattt gaacggtgaa tacgcggaac tgtatcgcca
      901 gcagcaaatg gacatggcgg gggtggagcc acaatgagac tgactcattg cttgcatgca
      961 tcaccttgcc cgccaatgtg gaattctgtt ttgaaaaagc ctgcttttgc gacattcttt
     1021 ggggaaaatc cggctgaaaa ctgttcataa ctttctgcat aacctgtgtt tttctttagg
     1081 cgggaaaatt tggaacgcga tgtaatgtgt gactacatta gtgtcaacaa agttcttaca
     1141 ggcactggtt ggaaataacg aagctgaagc ggatggaatc cgaaaggtga acagaaacgg
     1201 aagcaacggg acgccagccg acggtgacag cgaaaggcag aacgaccgaa agcgagttca
     1261 gctggaaaca ggatccggtt tgccaggttg ccggcggaca acttgcaggg aaagcaaaac
     1321 acaggaaact gtgcgagtgg aaccagcagg atgaacaagg gtgcccacca ggtgtaaaga
     1381 atgtgaccga aagaaatcaa cgaaagacga caaaggcggc acatctctga catcaaaaac
     1441 ggtagtaaga aacgcgttgc aagaaagcat cgggttagta agtacaagct tcggcaagta
     1501 acatgatctg
//
LOCUS       DATIQF010000044         8939 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_167991,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000044 DATIQF010000000
VERSION     DATIQF010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8939
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167991"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..448
                     /locus_tag="VLL95_00670"
     CDS             <1..448
                     /locus_tag="VLL95_00670"
                     /inference="COORDINATES: protein motif:HMM:NF016041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HSR37395.1"
                     /translation="WLFFLHDAYFYWIHRMMHLPGLFKLIHLVHHRSTNPSPWTAYAF
                     HPIEAVLEAGIIPLAAFLFPVHVGLFSLFMLFQIVYNIYGHLGYEFWPRSLASHWLGK
                     WINTGVAHNQHHKMFKGNYGLYTLIWDRLFGTVRNDYSTAMQTYGK"
     gene            complement(687..1283)
                     /locus_tag="VLL95_00675"
     CDS             complement(687..1283)
                     /locus_tag="VLL95_00675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37396.1"
                     /translation="MRKLCLSLFSLFLCLGVFAQPEKDSQIKAGTLTIHFGMQDFVTP
                     QRIKSSSMPTTVGNQNWAKLSEQQPALGISYIKGISNHFDVSVNYFIASLAYPFRDGT
                     PKPSTAYLLHEADASIVMKLLPDNHFFVPYLSAGVGASAYQGGKFDAFMPLGGGIQLK
                     LGSETFLFSNFQYRIPVTERANYHFFSSIGVGTQIGKD"
     gene            complement(1455..1850)
                     /locus_tag="VLL95_00680"
     CDS             complement(1455..1850)
                     /locus_tag="VLL95_00680"
                     /inference="COORDINATES: protein motif:HMM:TIGR00413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HSR37397.1"
                     /translation="MSAILLLTTAGFASKDEKKDATSGKNASVATGTASWYGGSFHGK
                     KTATGDKFDLNKFTCASNRYPLGTWLKVTNLRNGKSVVVRVNDRMHPRMKRIVDLSKG
                     AAGEIGMISTGVAKVQVENLGPSLPGTLP"
     gene            2147..2839
                     /locus_tag="VLL95_00685"
     CDS             2147..2839
                     /locus_tag="VLL95_00685"
                     /inference="COORDINATES: protein motif:HMM:NF013586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HSR37398.1"
                     /translation="MAFLVICACFTPRVWGQNRNPYALPLTTKARQYKAQTDSQPGLQ
                     MVRLSSIIPDLRTDWRYASSQNFTGEILYHQPAAYLRKEAATKLKQVDDSLKTMGIGL
                     LLFDAYRPYRATLAMWKIVPDDRYAANPANGSGHNRGIAVDLTLVNRHTGEPLRMPTD
                     FDNFSDTAHHDFQSLDSTVLQNRALLKGVMEHFGFRALSTEWWHYSLPEPKRYPLMDI
                     SFRKMKQWTKKN"
     gene            complement(2845..4809)
                     /locus_tag="VLL95_00690"
     CDS             complement(2845..4809)
                     /locus_tag="VLL95_00690"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HSR37399.1"
                     /translation="MLAGFNNVTFEFGARVIVEDATWHIHPNERIGLIGYNGTGKSTL
                     LRLLVGEYQPSAGSVERGRNVRIGFLHQDLLSSIIDKPIIEVAKDAFEQARTLELELR
                     KMEVQLEKDSSDEALLHRYADLLHDFELAGGYNMQHQSEEVLHGLGFETEQFEKPFSK
                     FSGGWRMRVLLAKLILQQPDILLLDEPTNHLDLPSIEWLEKYLQHYPGSVVIVSHDKF
                     FLNRMVTKIVELYQQQLHIYSGNYDFYEKEKAERIAVQKRAYENQQEYIRQQERFIER
                     FRAKATKAAQAQSALKRLDKLERIEDVELERPNIKINFLVGQQPGRTICTLKHVSKSF
                     GDIKILDDSSVEIFRGDKVALIGANGKGKSTLLRIIAGTEPISGQRIWGHNVQEAFYA
                     QHQLEALHLDNNILEEMATSRAGKTELEYRALLGCFLFGGEEVEKKIKVLSGGEKARV
                     ALAKTIVSKANFLMLDEPTNHLDMHSVELLIEALNKYEGSYVLVSHDRYFISRTANVF
                     WEIIDHKIREFRGTYDEYVQWKEKLIAQQAEAQNAQKESVETAASIKPEPVPAAPSKN
                     QPINKELQKEFQRSQKAFEKLEAEIRQWEGKKLEAERLLSDPAVYADKGKFLEAEKQY
                     AQIAEALAQLQSKYESAFELMMDLEEKLKG"
     gene            4943..5539
                     /locus_tag="VLL95_00695"
     CDS             4943..5539
                     /locus_tag="VLL95_00695"
                     /inference="COORDINATES: protein motif:HMM:NF023255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3347 domain-containing protein"
                     /protein_id="HSR37400.1"
                     /translation="MAKPRGVLIIIILLTGLTLAGYQYFSRNKVNTAAVKDKPLFLQN
                     SNDAFTQSLNAVVEEYLAMKDAFVQGDSAAVKLKTTAFSQKLDSIAWNQLQADSNLVA
                     LAQSLQKDIQTSCNHLVAATDFPSMHRDFQSSSDLLFDLLRSVQYKGVKLYQQFCPMA
                     FNNTGAHWLSAEMEILNPYFGNKMLHCGEIKDSISFEQ"
     gene            5536..7968
                     /locus_tag="VLL95_00700"
     CDS             5536..7968
                     /locus_tag="VLL95_00700"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR37401.1"
                     /translation="MNTTVTRFVLHSMTFPTMHLLTRFGFSRNTALLLCLALFLSFSA
                     AGQKITISGFVKDSLTGETLQGASVFAQEAQKGTSTNMYGFYSLTISQARETVMVSFV
                     GYQSKIILLDTAKGLTQDILLVPASYYATNVTVVGRKKENNVQAAQMGRVDLTMERIK
                     QIPAFLGEVDIMKALQLLPGVRNAGEGNAGLYVRGGGPDQNLIVLDDAVVYNSGHLFG
                     FFSIFNGDAIKNVSLIKGGMPAQYGGRLSSVVDVTMKDGNNQGYDFEGGIGNIASRFS
                     AQGPIEKGKSSFIVAGRRTYIDALVRPFINPESNLSGSGYYFYDLNAKMNFRLSNKDR
                     LFISGYFGRDVFTFNNKERSFNTNIPWGNTTATVRWNHIFNNKLFANTSLVYNDYQFK
                     FDALQNDFRIVLSSGIRDLNAKVDFDFFPRPEHKVKFGAQYTYHTFLPNLVSGSQGET
                     VFNPQNTGKKFANEYAVYVQDDWDVSNNFRISAGIRASGFTQVGPYTRFERDVYGNPI
                     DSIVYGKGSPVKTYGGIEPRLTFRLNTGASSSVKAAVTRNIQYIHLATNSGTTLPTDL
                     WVPSTYLVNPQKGWQYAAGYFQNFKDNTWETSVEVYYKTMENQIEYKEGFTPSLRDPE
                     EDFTFGRGWSYGAEFFVNKVKGRLSGWIGYTLSWTWRQFDNLNGGEKFPAKYDRRHDL
                     SVVANYSLSKKWKIGGVFVYGTGNAATFPERFYIMNGVLTQEASRINAYRLASYHRAD
                     VSATYIPKPNSTRKYKSSWVFSIYNLYSRLNPYFVYFDQQGDPLQGTQQLKALQVSLF
                     PILPSITWNFKF"
     gene            8027..>8939
                     /locus_tag="VLL95_00705"
     CDS             8027..>8939
                     /locus_tag="VLL95_00705"
                     /inference="COORDINATES: protein motif:HMM:NF017495.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF819 family protein"
                     /protein_id="HSR37402.1"
                     /translation="MQLLALFTNDAVVFGLLLSILAFVFVTSSSQHRFWKRFYTFVPS
                     LLLCYFLPSLFNSFGIIDGEKSGLYPVVRDYLLPASLVLLTTTVDIKAVRKLGGKALI
                     MFLVGSMGVMIGGPLAVGLFKWLDPAVVGGEGPDAVWRGLTAIAGSWIGGGANQAAMK
                     EIFGIGDNMFSAMITIDVITAYVWMAFLLYGAGIAPKLDAKLKADATAIEELRKKMEA
                     FHAKGDRIPTLADMMLIAGIAFGVTGIAHIFADNIAPFLETHAPQLGRFSLTTKFFWL
                     ILMATVIGIVLSFTKARELDHAGASKTG"
BASE COUNT         2209 a         2368 c         2113 g         2249 t
ORIGIN      
        1 ctggctgttc tttttgcacg acgcgtattt ctactggata cacaggatga tgcatttacc
       61 cgggcttttc aagctcattc atttggtgca tcaccggtcc accaaccctt cgccctggac
      121 tgcctatgca tttcacccta ttgaagcggt gttggaagcg ggcatcattc cgctggcggc
      181 cttcctgttt cctgtgcatg tgggcctgtt cagcctcttc atgctgttcc agatcgttta
      241 caatatctac gggcatcttg gctatgaatt ctggcccagg agcctggcaa gtcattggct
      301 gggaaaatgg atcaacaccg gggtggcgca caaccaacac cacaagatgt tcaaaggcaa
      361 ttatggcctg tacaccctga tctgggatcg cttgtttgga acagtgagaa acgattacag
      421 caccgccatg cagacctatg gaaaataaaa aaggatgcac caccttgcct ggaatgcatc
      481 ctttcggatt atcgaattct caataaaatt tgacgaggcc atggcctcac ggcaaacatt
      541 ctttctttac cggaagtgct tcctttcgaa gagcaactgt ttcctttttc ttccacgctg
      601 gaacaaaacc ggaaccggct gcagtccttc aattcatggt tccgaaacgc tttgaaaggg
      661 taccggagcc tggtgacaac caggtattag tctttcccga tttgcgtacc tacgccgatg
      721 cttgaaaaga aatggtagtt ggcacgttct gttaccggta tccggtattg gaaattggag
      781 aacaggaatg tttctgaacc cagtttaagc tgaataccgc cgcccaaagg catgaaggca
      841 tcaaacttgc cgccctggta ggctgaagca cccacaccag cgctgagata gggcacaaag
      901 aaatggttgt cgggaagcaa cttcatgaca atgctcgcat cagcctcatg cagcaaataa
      961 gcagtgctgg gtttgggagt accgtcacgg aacggatagg ccagcgaagc aatgaaatag
     1021 ttgacagaaa catcaaaatg gttggagatc cctttgatgt aagaaatacc caaagcaggc
     1081 tgttgctctg aaagttttgc ccaattctga tttccaacgg tagtaggcat gctgctggat
     1141 ttgatgcgct gcggcgttac gaaatcctgc ataccaaaat gaatggtcaa agttcccgct
     1201 ttgatctgac tgtctttctc aggctgggca aaaacgccca ggcacaagaa taagctaaac
     1261 aacgaaaggc aaagttttct cataaggagc tgtttagtaa ttgtatgcaa caaatgtatg
     1321 tttcaggaaa attgttctgt aaaattttaa tacacagtga catgttggcc agactcctca
     1381 aaacaaaaat gtcacccccg atgggatgac attacaaatt aatgcgtttg aatgtttgat
     1441 tttcctgctt ttggttacgg cagggttcca ggcaggcttg gtcccaggtt ttcaacctgt
     1501 accttggcta cccctgtgga gatcattcca atttcacctg cagcgccttt gctcaaatcc
     1561 acaatgcgct tcatgcgagg atgcatcctg tcattcaccc ttaccactac agacttaccg
     1621 ttgcgcaggt tggtcacctt caaccatgta cccaaagggt aacggttcga tgcgcaggta
     1681 aacttattca ggtcgaattt gtcgcctgtg gcggttttct tgccatggaa gcttccccca
     1741 taccagctgg cagtgcccgt ggctacagaa gcgtttttgc cagaggtggc atccttcttc
     1801 tcatcctttg aggcaaaacc ggcggttgtc aacaacaaga ttgctgacaa aaccaatgct
     1861 ttgcgcagta aggaaatgat atggttgata tttgaatgca tcttgtttct ttcagggtga
     1921 agagggtatt gaactttgtt ttatcattgt cgcaatacca tggttctcca aatacccggc
     1981 cagacttttg ctaattcagg tgcgaaggaa gcaaaaaata tccaaggatg aaaataccca
     2041 ggtcatgtgc cgatcataaa tcattgattt ttaactaaaa agcgacaaag tggcgcaaaa
     2101 acgtacaccc cttgccatat tttcaccagc ctttgccccc caatttttgg catttcttgt
     2161 gatttgcgcc tgcttcacgc caagggtttg gggccagaat cgaaacccct acgcactgcc
     2221 gctcaccacc aaagcccggc aatacaaagc ccaaacagac agccaacccg gccttcaaat
     2281 ggttcggctt agcagcatca tccccgacct caggaccgat tggcgctatg ccagcagcca
     2341 gaattttacc ggggagatcc tctaccatca gcccgctgcc tacctgcgca aagaagccgc
     2401 caccaaactg aaacaagtgg acgactctct aaaaaccatg ggcattggcc tgttgctatt
     2461 tgatgcctac agaccataca gggctacact tgccatgtgg aaaatagtac ccgatgaccg
     2521 gtatgccgcc aaccccgcca atggcagcgg gcacaaccgg ggtatagctg ttgatctcac
     2581 cctcgtcaat cgtcatacgg gagagcctct gcgcatgccg acggacttcg ataatttcag
     2641 cgataccgcc caccacgatt ttcaatcgct tgacagtaca gtgctgcaaa acagggcctt
     2701 gctgaaaggg gtgatggaac atttcggctt cagggcattg tccaccgaat ggtggcatta
     2761 ttcgttgccc gaaccaaagc gatacccgct gatggatatc agtttccgga aaatgaaaca
     2821 gtggacaaaa aagaattgag gctgctaccc tttcaatttt tcttccagat ccatcatcaa
     2881 ctcaaaagcc gattcatatt ttgactgcag ctgcgccagc gcctctgcta tttgcgcata
     2941 ttgcttttct gcctccagga atttgccttt atcggcatac acggcaggat ctgacaacag
     3001 acgttcagct tccagctttt ttccttccca ttgcctgatc tccgcttcca gtttttcaaa
     3061 cgctttttga ctgcgctgaa attccttttg caactccttg ttgatgggct gatttttgga
     3121 aggagcagcc ggaactggct ctggctttat gctggctgca gtttccacac tttccttctg
     3181 cgcattttgc gcctccgcct gctgggcgat cagtttttct ttccactgca catactcatc
     3241 gtaggtgcct ctgaattcac ggatcttgtg atcaatgatc tcccagaaaa cattggcggt
     3301 gcgggaaata aaatatcggt cgtggctgac cagtacgtaa ctgccttcgt atttattcaa
     3361 tgcttcaatc agcagttcca cactgtgcat gtcgaggtgg ttggtaggtt cgtccagcat
     3421 caggaagttg gccttgctca caatcgtttt agccagcgcc actctcgcct tttcgccacc
     3481 gctcagtacc ttgatctttt tctccacctc ttcgccgcca aacaggaagc aacccagcaa
     3541 cgcccggtat tccaattctg ttttacctgc ccggctggtg gccatttctt ccaaaatgtt
     3601 gttgtcaaga tgcaaggctt ccaactggtg ctgtgcataa aatgcttcct gcacattgtg
     3661 gccccaaatg cgctgccccg aaatgggttc ggtgccggca atgatgcgca gcaaggtgga
     3721 tttacccttg ccgttggcac caatcagggc taccttatcg ccccggaaaa tttcaacact
     3781 cgaatcgtcc aggatcttga tatcaccaaa tgatttggac acatgcttta gcgtgcaaat
     3841 ggtgcgccct ggttgctgac ccaccaaaaa gttgatcttg atattgggtc tttcgagttc
     3901 cacatcctca atgcgctcca acttgtcgag ccgcttgagg gcgctttgcg cctgtgccgc
     3961 tttcgtggct tttgcccgga atcgttcgat gaaacgctcc tgctgccgga tgtattcctg
     4021 ctggttttcg taggctcttt tctgaacggc tatgcgctcc gccttttctt tctcataaaa
     4081 atcatagttg cccgaataga tgtgcagttg ctgctggtac aactccacga ttttcgtcac
     4141 cattcggttc aggaaaaatt tatcgtggct cacgatcacc acgctgccgg gataatgctg
     4201 caggtatttt tccagccatt caatactcgg caggtcaagg tggttggtcg gttcatcgag
     4261 caaaaggata tcgggctgtt gcaggatcag tttggccagc aatacccgca tgcgccagcc
     4321 accactgaac ttactgaagg gcttttcgaa ttgttcggtt tcaaagccaa gaccgtgcag
     4381 cacttcctcg ctctggtgtt gcatgttgta gccaccggcc agttcaaaat cgtgaagcag
     4441 gtcggcatag cggtgcagca aggcttcatc ggagctatcc ttttccagtt gcacctccat
     4501 tttgcgcagc tccagttcca gcgtccgggc ctgttcaaac gcatccttcg ccacttcgat
     4561 gatcggcttg tcgatgatcg aactcagcag gtcctggtgc aaaaaaccga tgcgtacatt
     4621 cctgcctctt tccaccgaac cggccgaagg ctggtattcg cccaccagca ggcgcagcaa
     4681 agtggatttg ccggtaccgt tatagccaat caatccaatt cgttcattgg ggtggatgtg
     4741 ccaggtggca tcttccacaa ttacccgggc accaaattca aaggtcacat tattaaatcc
     4801 agccagcatg gcgcaaaagt aagggaagag cggagccgta atgagccgct tgaaaacccg
     4861 gcgaatattt taaaagcttt atcaactgcc gggcagccag ccgttttggg caggttacat
     4921 ttgccagaca aaaaaactgg ttatggccaa accccgtggt gttcttatca tcatcatttt
     4981 gctgacaggc ttgactttgg ccggctacca atacttttcc agaaacaagg tgaacacagc
     5041 tgccgtaaaa gacaagccgc tttttttgca aaacagcaat gacgcattta cccaaagcct
     5101 gaatgcggtg gtggaagaat acctggcaat gaaagacgct tttgtgcagg gtgattcagc
     5161 tgcggtaaaa ttgaaaacca ctgctttttc ccaaaaactg gacagcattg cctggaacca
     5221 gttgcaggcc gacagcaacc tcgttgccct cgcacaatct ttacagaaag acattcaaac
     5281 ctcctgcaac cacctggttg cggccaccga cttcccttcc atgcaccgcg actttcaaag
     5341 cagcagcgat ttgctgttcg acctgctgcg cagtgtgcag tacaaaggcg tcaaacttta
     5401 ccagcagttt tgccccatgg ctttcaacaa cactggtgcc cattggctga gcgcagaaat
     5461 ggaaatcctc aatccctatt ttggcaacaa gatgctgcat tgtggagaga taaaggattc
     5521 catctctttt gaacaatgaa cacaacagta acccggtttg tattacactc catgactttc
     5581 cccaccatgc accttcttac ccgttttggt ttttccagga acactgccct gctcttgtgc
     5641 ctggctttgt ttctttcatt ttcagcagcc ggccaaaaaa tcacgatcag tggttttgtg
     5701 aaagactcgc tgactggtga gacgttgcaa ggcgccagcg tttttgcaca ggaagcacaa
     5761 aaaggaacca gtaccaatat gtatggtttc tattcgctca ccatctcgca ggccagggaa
     5821 accgtaatgg tctcatttgt aggctaccag tcgaagatca tcctgctcga tacagccaaa
     5881 gggctcaccc aggatatatt gctggtgcct gcctcctact atgccaccaa tgtgacggtt
     5941 gtgggccgca aaaaagaaaa caacgtgcag gcggcacaaa tgggaagggt tgacctgacc
     6001 atggagcgca tcaagcagat acccgccttc cttggggaag tggacatcat gaaagcactg
     6061 caactgctgc ccggcgtacg caatgccggc gagggcaatg ccggcttgta tgttcgcggc
     6121 ggtggccccg accaaaacct gatcgtgctg gacgatgccg tggtgtacaa cagcggacac
     6181 ctctttggat tcttttccat tttcaatggc gatgccatca agaatgtttc attgataaaa
     6241 ggcggcatgc cggcgcaata cgggggacgc ctgagcagcg tggtggatgt gaccatgaaa
     6301 gacggcaaca accagggcta cgattttgaa ggcggcattg gcaacatcgc ttcacgcttt
     6361 tcagcacaag ggcccataga aaaaggcaag tcttctttca tagtggcggg caggagaacc
     6421 tacatcgatg cattggtaag gccatttatc aatccagaaa gcaacctcag tggaagcggc
     6481 tattatttct acgatctcaa tgccaaaatg aatttccgcc tgagcaacaa agacaggctt
     6541 ttcatcagcg gctatttcgg aagggatgtg ttcactttca acaacaaaga gcgttcgttc
     6601 aacaccaata taccctgggg aaacaccacc gctaccgtga gatggaacca catcttcaac
     6661 aataaactgt tcgccaacac ctcgctggtg tacaacgatt accagttcaa atttgatgcc
     6721 ctgcaaaatg atttcaggat cgtgctttcg agtggcatca gagacctcaa tgccaaagtg
     6781 gatttcgatt tctttccaag accggaacac aaagtgaaat tcggcgccca atacacatac
     6841 cacactttcc tgcccaacct ggtgagcggc agccagggcg aaacggtttt caacccgcaa
     6901 aacaccggca agaaatttgc caacgagtac gctgtatatg tgcaggatga ctgggatgta
     6961 agcaacaact tccgcatcag cgccggcatt cgggccagcg gctttacgca agtgggccct
     7021 tacaccaggt tcgaaaggga tgtgtatggc aaccctatcg acagcattgt ttatggcaaa
     7081 ggcagtcctg taaaaacata cggcgggatt gaacctcgtc ttacctttcg attgaataca
     7141 ggcgccagca gctccgtgaa agcagccgtt acccgcaaca tccaatacat tcacctggct
     7201 accaacagcg gcactacact gcccactgat ttgtgggtgc caagtaccta ccttgtaaat
     7261 ccgcaaaaag gatggcaata tgctgccggc tatttccaaa actttaaaga caatacctgg
     7321 gaaacatcgg tggaagtgta ttacaaaacc atggaaaacc agattgaata caaggagggc
     7381 ttcactccat cgctgagaga ccccgaggag gatttcacgt tcggcagggg ctggagctat
     7441 ggggcggaat tttttgtgaa caaagtgaaa ggccggctca gcggctggat cgggtacacc
     7501 ctcagctgga catggcggca attcgacaat ttgaatggcg gcgagaaatt cccggcgaag
     7561 tacgaccgca ggcacgacct gagcgtggta gccaattaca gcctttcgaa aaaatggaag
     7621 attggcggtg tgtttgtgta tggcaccggt aatgccgcca ccttccccga acgcttctat
     7681 atcatgaacg gggtgctgac ccaggaagcc agccgcatca atgcgtaccg cctggcctct
     7741 taccaccgtg ccgatgtgag tgccacctac atacccaaac ccaacagcac ccgcaaatac
     7801 aagagcagct gggtgttcag catttacaac ctctacagcc ggctcaatcc ttacttcgtt
     7861 tattttgacc agcaaggcga tcccctgcag ggcacccagc aattgaaagc gctgcaggtt
     7921 tcactcttcc ccatcctgcc cagcatcacc tggaatttca aattctaaac cgctgcacat
     7981 tcaaatcggc cttggtgggt tgccccaaat cagctaatta tgctgcatgc aactattggc
     8041 cctgtttaca aatgacgcgg tagtatttgg cttgctcctt tccatactgg catttgtttt
     8101 cgttacctcc agcagccagc atcgcttctg gaaacgcttt tacacgtttg taccctcctt
     8161 gctgctttgt tatttcctgc cttctttgtt caattcattt ggcatcatcg atggcgaaaa
     8221 atcgggattg tatcctgtag tgcgtgatta cctgttgccg gccagcctgg tgttgcttac
     8281 caccacggtc gacatcaaag cagtgcgcaa actgggcggc aaagcattga tcatgttcct
     8341 ggtgggctca atgggtgtaa tgattggcgg gcctttggcg gtagggctgt tcaaatggtt
     8401 agaccctgct gttgtgggtg gcgaaggacc tgatgcggtt tggcgcggcc tcactgccat
     8461 tgccggcagc tggattggtg gtggcgccaa ccaggccgcc atgaaagaaa ttttcggcat
     8521 cggcgataac atgttcagcg ccatgattac cattgacgtg atcactgcct acgtgtggat
     8581 ggccttcctg ttgtacggtg cgggcatcgc tcccaaactg gatgccaaac tcaaagctga
     8641 tgccactgcc attgaagaac tgcgcaaaaa aatggaagcc ttccatgcca agggtgatcg
     8701 cattcctact ctggccgata tgatgctgat tgccggcatc gcctttggcg tcaccggcat
     8761 tgcacacatt tttgccgaca acattgcccc cttccttgaa acgcatgccc cgcaactggg
     8821 ccgcttcagc ctcaccacca aattcttctg gctgatactg atggccactg tcattggcat
     8881 tgtgctttct tttaccaaag ccagggaact cgatcacgcc ggcgcttcca aaacaggca
//
LOCUS       DATIQF010000045         2235 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_213682,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000045 DATIQF010000000
VERSION     DATIQF010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2235
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213682"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2235
                     /locus_tag="VLL95_00710"
     CDS             <1..>2235
                     /locus_tag="VLL95_00710"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FG-GAP-like repeat-containing protein"
                     /protein_id="HSR37403.1"
                     /translation="FLPRKDLTIQQFEATEVDIADINGDGNLDATISAYRVIHCFRFS
                     NSGSNLQAEMFFTFSIGYQSPDSLSRSSVQHGFADFDSDGKTDLFSLSFSGAITTVVR
                     NRINEPLILGYNPHYGAAGTRVTVKGARLQQVQTMQVGGQAPQSFTATNDSTIEMVLA
                     GGNSGSVTAQASTGRSELGTFIFRAVIDSFAPTKAKPGETILIHGKGFDPDPAKNLVL
                     FGPVKGIVSAAQPNQLQVILPPGGSTGKVVVITRGLTARSPQVLYVTTNLSANRFHAY
                     SFADTVTVSAKMGDYTNRIRVADFNRDGLPDWISDGYETSSYLSFSLVRNLSAPGKIA
                     WAPIQTFTAYNSNIIVENQFEVGDIDGDGFDDVVVSCNDSLLLVLRNLSTSDSIAFAA
                     PVRIPVFGNKLGADVRLADIDGDGRIDIAAEGGFLFRNRSQPGSIQFDLPFKVWNVRA
                     VEDMDGDGLPELLCVNPSSQTIICRNLSNQAGFKFDSQTFVLNSASLWRDNFFIADMD
                     NDSRPDLVFSKGDLGFSVIRNNSTQGRLAFSSEEYFSTNEYSNSSLLEKADVDGDGRL
                     DVFLNLGSYVIRNTSIPGTISFDLSNKALIRPVGSKLNEGRLASADLDLDGKMDLVTW
                     RAIGQWAIHRNRVAEDLHLPVCPSGGKIEIPSDILGSAYQWQVSTGPDQPFTNLLPSS
                     VYDSTNSKNLLLINPPTTFYGYSYRCMVDGKPSAAFKLKFETRWRSNIIGLWYYSNWN
                     CNGLP"
BASE COUNT          604 a          452 c          519 g          660 t
ORIGIN      
        1 cttcttgcct cgtaaggatt tgactataca acaatttgaa gctacagagg ttgatattgc
       61 agatataaat ggcgacggaa acttagatgc caccatcagt gcatatcgag tcatacattg
      121 ttttcgcttc agcaacagcg gaagtaatct gcaggcagaa atgttcttta cattcagcat
      181 tgggtatcag tcgcctgatt cccttagtcg atcatcagta caacatggct tcgctgattt
      241 cgactcagat ggcaaaacgg atttgttcag cctcagtttc agtggggcca tcaccactgt
      301 agttcgaaat cgaattaatg aacctctgat cttaggatac aatccacatt atggggcggc
      361 aggcaccagg gttacagtga aaggtgcacg attgcagcag gtgcaaacaa tgcaggttgg
      421 agggcaggcg ccgcaatcat ttaccgctac aaatgattca accatagaaa tggttttggc
      481 aggcggcaat agtggttccg ttactgccca agcttccaca ggcagaagcg agttgggtac
      541 attcatattt cgtgctgtta ttgactcctt tgcgccaacg aaagccaagc ctggagaaac
      601 aatcttaata catggaaaag gctttgatcc agatcctgca aagaatctgg tattatttgg
      661 tcccgtaaaa ggtatagtaa gtgcagcaca gccaaaccaa cttcaggtga ttttacctcc
      721 aggtggttcg acaggcaagg tagtagtaat aacaagaggc cttactgcca ggtcgccaca
      781 agtattgtat gttacaacaa acctttcagc taaccgattt catgcataca gttttgcgga
      841 tactgtaact gtttcagcta aaatgggtga ttatacaaac cgaatccgcg tggctgactt
      901 taatagagat ggcttgcctg attggatttc agatgggtat gaaacgagtt cgtacctcag
      961 cttttcctta gttaggaatt tatcagcgcc tggcaaaatt gcttgggcgc caattcaaac
     1021 ttttacagct tataactcaa atattattgt tgagaaccag tttgaagttg gggatattga
     1081 cggagatgga tttgatgatg tagtagtttc ctgcaacgac agtttgttat tggtgttgag
     1141 aaatttaagc acatccgact ctattgcttt tgccgctcct gtgcgcattc ctgtatttgg
     1201 caataagcta ggtgctgacg tacgcttggc tgacattgat ggtgatggca gaatagacat
     1261 agctgcagaa ggtggcttcc tttttagaaa ccggtctcag cctggaagta ttcaatttga
     1321 tctgcccttt aaagtttgga atgtaagggc agtggaagac atggatggcg acggtttgcc
     1381 agagttgcta tgtgttaatc cttctagtca aacgatcatt tgccgtaatc ttagcaacca
     1441 ggctggtttt aagtttgatt cgcaaacttt tgtattgaat tctgctagtt tgtggaggga
     1501 caactttttt attgcagaca tggataacga tagtcggccc gatttggttt ttagtaaggg
     1561 tgatcttggc ttttcagtga ttcgaaataa tagtactcag ggccggcttg ccttttctag
     1621 tgaagagtat ttttctacca atgaatactc gaattcaagc ctattagaaa aagctgatgt
     1681 agatggggat ggccgattag atgttttctt gaatttgggc agctatgtta taagaaacac
     1741 gagtatccct ggaacaatat catttgatct aagcaataaa gctcttatcc gtccagttgg
     1801 ttctaaatta aacgaaggcc gacttgcgtc tgccgacctg gatctcgatg gaaaaatgga
     1861 cttggttaca tggcgagcca ttggccaatg ggccatacac cgtaatcggg ttgcagaaga
     1921 tttgcatcta cctgtttgtc cttctggcgg caaaattgaa ataccttctg acatactagg
     1981 atcagcctac cagtggcagg tgagtacagg acctgatcag ccttttacca atttgttgcc
     2041 ttcatctgtt tatgacagca ccaattccaa aaaccttctt ctgatcaatc ccccaactac
     2101 attttatggc tattcctatc gctgtatggt ggacggaaag cctagcgctg ctttcaaact
     2161 aaaattcgaa acccggtggc gttcaaacat tattggcctt tggtattata gcaattggaa
     2221 ttgtaatggg ctccc
//
LOCUS       DATIQF010000046         2440 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_107276,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000046 DATIQF010000000
VERSION     DATIQF010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2440
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107276"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1239)
                     /locus_tag="VLL95_00715"
     CDS             complement(<1..1239)
                     /locus_tag="VLL95_00715"
                     /inference="COORDINATES: protein motif:HMM:NF012975.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNB domain-containing ribonuclease"
                     /protein_id="HSR37404.1"
                     /translation="MGKNKDQNRNKHSRYYEITGVLDITRSGLGFVTTSDTEGDVLVR
                     PADFNKAFHGDRVRVAITRDGLGGRKREGKITAVLQRKTTQFMGTIRYHAGRCFFLPD
                     ADKPMPHFVLEDFDENEVEEGSRVIVKLLRWDNNDRRPIGELVEVVAMDDLNDIAMKD
                     ILMENGFPLQFSDDALEDAARMNEHIPHSEVKRRRDFRDVLTFTIDPVDARDFDDALS
                     IRLIKKGLYEIGVHIADVSHFVEEGSILDQEAYQRATSVYLPDRVNPMLPERISNELC
                     SLRPKEDKFTFSAVFHISSKGEVKEKWLGRTLIHSDHRFTYEDVQAIIESEEGMYAEE
                     VLILNKLARKFRKDRFDNGAINFSSQEVRFKLDESGKPVAVVVKESKESHQLIEEFML
                     LANRTVAEEVSKVKIEGKPMP"
     gene            complement(1239..2318)
                     /gene="lpxK"
                     /locus_tag="VLL95_00720"
     CDS             complement(1239..2318)
                     /gene="lpxK"
                     /locus_tag="VLL95_00720"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: protein motif:HMM:NF014645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HSR37405.1"
                     /translation="MPFNFFLLRGFRLLLFPFSLLYGLAVVVRNKLYDWQWIKSTSFN
                     LPIICVGNLSVGGTGKSPMTEMLIECLQPHFQVATLSRGYKRKTKGYLLADDQTTALE
                     IGDEPMQFHLKYPHIGVAVGEERLVAIPQLLHDRPQTQVIILDDAFQHRSVKAGLNIV
                     LTDYSNPYWHDWFLPTGDLRDQKSSACRASVIVVTKCPANLSEQERNDIMQRIRPQKQ
                     QRVFFTTLQYGRPYHISAGYTYDIQPHTEVLLICGIANPMPLKKHLEEKAASYYEMSF
                     NDHHIFSVDDLYAMRKKFEAMDGVEKIILTTEKDAVRLVKYGSELNALPLYVQPVMHQ
                     VLFNEENAFKDLVTAFVSDFGKGNN"
BASE COUNT          588 a          639 c          542 g          671 t
ORIGIN      
        1 tggcatgggc ttgccttcaa ttttcacttt gctcacctcc tctgccacgg tccggttggc
       61 cagcaacata aactcttcta tcaactggtg cgattccttg ctttctttca caaccacggc
      121 tacgggcttt cctgattcat ccagtttaaa tcgcacttcc tgcgaactga aattaatggc
      181 cccgttgtcg aaccggtctt tgcgaaactt tctcgccaat ttattcagga tgagtacttc
      241 ttctgcatac atgccttctt ccgattcgat gatggcttgt acatcttcgt aggtgaagcg
      301 gtgatcggaa tgaatgagcg tccggcccag ccatttctct tttacttcgc ccttgctgct
      361 gatatgaaac acggctgaaa acgtgaactt gtcttccttc ggacgcagtg aacacaattc
      421 attgctgatc ctttcgggca acataggatt cacccggtcg ggcaagtaca cactggtagc
      481 ccgttggtaa gcttcctggt cgagtatcga tccttcttcc acgaagtgac tcacatcggc
      541 aatgtgcaca cctatttcgt acaacccttt tttgatgagg cgaatgctca gagcatcgtc
      601 aaaatcacgg gcatccacag gatcgatggt gaaggtgagc acgtccctga aatccctgcg
      661 ccgcttgact tcagaatgcg ggatgtgttc attcatgcgg gctgcatctt caagggcatc
      721 gtcagaaaac tgcaatggaa atccgttttc catcaggatg tccttcatgg caatatcatt
      781 caaatcatcc atagccacta cttccaccag ttcaccaatg gggcgtcggt cattgttatc
      841 ccaacgcagc aattttacga tcaccctgga tccttcctcg acttcatttt catcaaaatc
      901 ttccagtaca aaatggggca ttggcttgtc tgcatcaggc aaaaagaagc aacgccctgc
      961 atggtagcga atggtgccca tgaactgcgt ggtcttgcgc tgcaatactg ctgttatttt
     1021 cccttcgcgt ttccgtcctc ccaatccatc acgggtaatg gccacccgca ccctgtcgcc
     1081 gtgaaaggct ttgttgaagt cggccggccg caccaacaca tccccttcgg tatcgctggt
     1141 ggttacaaat cccaatcctg aacgtgttat gtcgagcact cccgttattt cataataccg
     1201 tgagtgtttg ttcctgtttt gatccttatt ctttcccatt aattatttcc ttttccaaag
     1261 tctgaaacaa atgcagttac caaatctttg aatgcgtttt cttcattgaa caaaacctgg
     1321 tgcattaccg gctgcacata caaaggcagc gcattcaatt cactgccata cttcaccaat
     1381 cttactgcat ctttctcggt ggtgagtatt attttttcaa caccatccat ggcttcaaac
     1441 tttttgcgca tggcatagag atcatccact gaaaaaatgt gatgatcgtt gaaactcatc
     1501 tcgtaataag aagccgcctt ttcttccagg tgtttcttta aaggcatggg gttggcaatg
     1561 ccgcaaatca gcaacacttc ggtatgcggc tggatgtcgt aagtatatcc agccgaaata
     1621 tgatacggcc ggccatactg cagcgtcgta aaaaacactc gctgctgttt ttgcggacga
     1681 atacgctgca ttatgtcatt ccgctcctgc tcactaaggt tggcaggaca tttcgtgacc
     1741 acaataaccg aagcccggca ggcactgctt ttctggtcac gcaggtcgcc tgtaggcaaa
     1801 aaccaatcgt gccagtaagg gttgctgtaa tccgtcagaa caatgttcag gccggctttt
     1861 acagaacggt gctgaaatgc atcatccaga atgatgacct gcgtctgggg tcgatcgtgc
     1921 agcaattgcg ggatggccac caatcgctcc tcgcctactg ccacgccaat gtgcgggtac
     1981 ttgaggtgaa actgcatggg ttcatcgcct atctcaagtg cagtggtttg gtcatcggcc
     2041 agcaggtatc cttttgtttt tcgcttgtat ccccggctta atgtagccac ctggaaatga
     2101 ggctgcaggc attcaatcag catttcggtc atggggcttt tgccggtacc acccacactc
     2161 aaattgccca cgcaaatgat ggggagattg aaagaggttg atttgatcca ctgccagtcg
     2221 tacaacttgt ttcgtaccac cacagccaac ccgtacaaca gtgaaaaggg aaacaacagt
     2281 aagcggaatc cccgcaataa gaaaaaatta aaaggcataa atctgatgtg gcgtgatgca
     2341 gtagcttaaa ggtacatcgt tggcattaag gtcctcaatt tgatcgacag gcgggaaaaa
     2401 gctgaagccc accttcatta catcgggttg gcagcgcttc
//
LOCUS       DATIQF010000047         3557 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_31222, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000047 DATIQF010000000
VERSION     DATIQF010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3557
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31222"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1164)
                     /locus_tag="VLL95_00725"
     CDS             complement(<1..1164)
                     /locus_tag="VLL95_00725"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HSR37406.1"
                     /translation="MANDNQQTLRRSVLRIFSIIKLERREIGAIYVYAILFGLLNLTV
                     PLGVQSIINFVLAGSFSASMIILIAAVVIGVFSTGVLQISQMKLNEKIQQNLFAQYAF
                     EFTYRIPKVDMKSVDGYFMPELVNRFFDVVSLQKGLSKILLDLPIATIQILFGMILLS
                     FYNPVFIVFGLLLLFILWLILRFTSAKGLETSIEESDYKYKVAGWLQEMARVMKSLKF
                     SQNTGMHIERTDGYVTGYLRARTNHFKILLTQYWALIVFKVLITLSMLVIGAFLLIGQ
                     ELNVGQFVAAEIVILSVMSSIEKLIISLDRIYDVLTSVEKLGKVIDKPLEKSGALQMD
                     TRKGIEIEVRELSFGYHDDQPILQNVSLLAPAGKLVCLAGKEGVGKSTLLRLIT"
     gene            1410..2207
                     /locus_tag="VLL95_00730"
     CDS             1410..2207
                     /locus_tag="VLL95_00730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37407.1"
                     /translation="MPRHLLFVFLLTLTMGPIGYKAFGQGNLIEVKGVVFDITQKVPL
                     DGVTVMATNGKGTMTDSMGRYTIWVRETDSVFFSYQNRVSGKYPVLGMQDPRQFSMAL
                     HVYTNQLPPVTIYGKNYRTDSLANRAAYAKYFNWNKPNPLKSVNVGGGGAGMDPNEII
                     NLFRFKRNRQLAALQARLVKEEQDKYVDFRFNRKFVRMVTNLADESLASFMFKYRPPY
                     DFVMLVNDLELGYYIQQCYKKETGELPTGVEIYLLGIDPLSRENRKN"
     gene            2296..3477
                     /locus_tag="VLL95_00735"
     CDS             2296..3477
                     /locus_tag="VLL95_00735"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSR37408.1"
                     /translation="MPQQDLFQSPDYYLVDELLTEEHKMIRDTVRAYVKKEISPIVEE
                     YAQRAEFPQQIVKQMGELGCFGPTVPEQYGGGGLDYISYGLMMQELERGDSGVRSTAS
                     VQGSLVMFPIYAFGSEEQRMKYLPKLASGEWLGCFGLTEPNHGSNPAGMLTNIKDAGD
                     HVILNGAKMWISNAPFAQVAVVWAKDEEGVVRGLIVERGMEGFSTPTTHNKWSLRASA
                     TGELVFDNVKVPKENILPNVKGMKGPLSCLNKARYGIAWGTLGAAMDCYDTALRYSKE
                     RIQFDRPIGGFQLQQKKLAEMITEITKGQLLVWRLGVLMNENRATPAQISMAKRNSCE
                     IAKNIASDARQMLGGMDITGEYPIMRHIMNLESVITYEGTHDIHLLITGMDITGMNAF
                     S"
BASE COUNT          968 a          869 c          858 g          862 t
ORIGIN      
        1 ggtaatgagg cgcagcaatg tgcttttccc cacgccctcc ttgccagcca ggcaaaccag
       61 tttgccagcc ggagccaaaa gacttacatt ctgcagaatc ggctgatcgt catgataacc
      121 aaaggagagt tcacgcactt ctatttcgat acctttccgc gtatccatct gaagggctcc
      181 cgatttttcc aacggtttgt caatcacttt gcccagtttc tccacggagg tcaggacatc
      241 gtagatcctg tcgagactga tgatgagctt ttcaatactc gacataacgc taaggatcac
      301 gatctctgcc gctacgaact ggcccacgtt cagttcctgg ccaatcagca gaaaagcacc
      361 aataaccagc atggaaagtg tgatgagcac cttgaaaact attaatgccc aatactgcgt
      421 tagcaggatt ttgaagtggt tggtgcgggc ccgcaggtag cccgttacat atccgtcggt
      481 tctctcgatg tgcatgccgg tgttctgaga gaacttcaac gacttcatca cccgtgccat
      541 ttcctgcaac caacctgcca ccttgtattt gtaatcgctt tcctcaatgc tggtctccaa
      601 tcctttggcg ctggtgaaac ggaggatgag ccacagaatg aacagcaaaa gcaaaccaaa
      661 tacaataaaa acagggttat agaatgacaa caggatcatg ccaaacagga tctgaatggt
      721 ggcaatgggc aaatccagca ggattttgct caaccctttt tgcagcgata ccacatcaaa
      781 aaagcgattg accaattcag gcatgaaata accgtcgaca cttttcatgt ccaccttcgg
      841 tatgcggtag gtgaattcaa acgcatattg tgcaaacagg ttttgctgga tcttttcgtt
      901 cagtttcatt tggcttatct gtagcacccc ggtggaaaaa acacctatta ctacggcagc
      961 aatgagaatt atcatggagg ctgaaaaact gccagccaat acaaaattga taatggattg
     1021 cacgcccagc ggtacggtca ggttgaggag gccgaacagg atggcatata catagatggc
     1081 gccaatctct cggcgctcca gtttgatgat gctaaaaatt cgcagtacgg atcgtctcag
     1141 agtttgctga ttgtcatttg ccatgcggtt agcggtagta tttatgttga tctgtttaca
     1201 gaatttcaaa tacaactctt agacagccaa aaggttgtaa ttggtttgca aaatacccga
     1261 tagcaaccca cgtgcccaag tttgcctttc tttttctgca aggtttaggg ttttataacc
     1321 gggtgttata tcgaaggatc gaaggtagat aattcgttaa atttcaatgt cttgtttcat
     1381 gtgaaattgc cccccttaac ttcgacccca tgcctcgcca ccttcttttt gtttttttgc
     1441 tgacgctgac aatgggcccc attggataca aagcgtttgg gcagggcaac ctcatcgaag
     1501 taaaaggcgt ggtctttgac atcacccaaa aggttccgct tgatggtgta accgtgatgg
     1561 ctaccaatgg taaagggacc atgactgatt cgatgggccg ttacaccatt tgggtgcgtg
     1621 aaacggattc cgtgtttttt tcctatcaaa accgggtctc aggcaaatac ccggtgttgg
     1681 gcatgcagga tcccaggcag ttcagtatgg ccctgcatgt ttacaccaac cagttgcctc
     1741 cggttaccat ttacggcaag aattaccgga cagattcact ggccaaccgg gcggcctatg
     1801 ccaagtattt caattggaac aagcctaatc cgctgaaaag tgtgaatgtg ggaggcggtg
     1861 gcgccggcat ggatcccaac gagatcatca acctgtttcg ttttaaaaga aaccggcaat
     1921 tggcagcatt gcaggcacgc ctcgtaaaag aagagcagga taaatatgtt gatttccggt
     1981 tcaacaggaa gtttgtgaga atggtgacga acctggccga tgaatcgctg gcctccttca
     2041 tgttcaagta ccgtcccccc tatgattttg taatgctggt aaacgacctt gaactaggct
     2101 attatattca gcagtgctac aaaaaagaaa caggcgagtt gccaaccggt gtggagattt
     2161 acctgctggg cattgatccg ctttcccggg aaaaccgaaa aaactgacac tttttttcct
     2221 tcagaaatcg tgcatattta agggcaaaca cagccactaa agccactact tttgcgcatt
     2281 caaccaatta cagctatgcc acaacaagat ttgtttcaaa gcccggatta ttacctggta
     2341 gatgaactgc tgacagaaga acacaaaatg attcgcgaca cggttcgagc ctatgtcaaa
     2401 aaagagatca gccccattgt tgaagaatat gcgcagcggg cagagtttcc gcaacaaatt
     2461 gtaaagcaaa tgggagaact gggctgcttc ggccctaccg tacctgagca gtatggtggc
     2521 ggcggcctcg attacatcag ctatggcctt atgatgcagg aactggaacg tggcgacagt
     2581 ggtgtacgca gtaccgccag cgtacaaggg tcgttggtga tgtttcctat ttacgccttt
     2641 ggcagcgaag aacagcgcat gaaatacctg cccaaactgg ccagcggcga gtggctgggt
     2701 tgctttggcc ttacagaacc caaccatggc agcaatcccg ccggcatgct caccaatatt
     2761 aaagacgccg gcgaccacgt aatattgaac ggcgccaaaa tgtggatcag caatgcgccc
     2821 tttgcacagg tagctgtggt atgggccaaa gatgaagaag gcgtggttcg cggactgatc
     2881 gtggagcgtg gaatggaagg gttcagcacc cccaccaccc acaacaaatg gagcctgcgt
     2941 gccagtgcta ccggcgagtt ggttttcgac aatgtaaaag ttccaaaaga gaatattttg
     3001 cccaatgtaa aaggcatgaa gggcccattg agttgcctca acaaagcccg ctacggcata
     3061 gcctggggca cactcggcgc cgccatggat tgctacgata cggcgctgcg ctacagcaag
     3121 gaacgcattc aattcgaccg ccccatcggt gggttccagt tgcagcagaa aaaactggct
     3181 gaaatgatca ccgaaatcac gaaaggacag ttgctggtat ggcgcctggg cgtgctcatg
     3241 aatgaaaaca gggccacacc ggcacagatc agcatggcca aacgcaatag ctgtgaaata
     3301 gccaagaaca ttgccagtga tgcccgccaa atgctgggcg gcatggacat aaccggcgag
     3361 taccccatca tgcgccacat catgaacctc gaaagtgtga tcacctacga aggcacccac
     3421 gacattcacc tgcttataac aggtatggac attaccggca tgaatgcttt ttcctgaaaa
     3481 cagaatgtta tttaaccggc tcaaaaagga atcccctgtg gattcctttt ttttatggat
     3541 cctttatccg ctaatat
//
LOCUS       DATIQF010000048         3587 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_259298,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000048 DATIQF010000000
VERSION     DATIQF010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3587
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259298"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1595)
                     /locus_tag="VLL95_00740"
     CDS             complement(<1..1595)
                     /locus_tag="VLL95_00740"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HSR37409.1"
                     /translation="MNRILFTLMLLAVGMPGMITAQPDRWQQQISYVMDVNLNVQTNI
                     VTGKQTINYTNNSPDTLREIYFHLYWNAFQPNSSMDVRSRELGTKVVGRNRDGSERID
                     WDPRVKDRISKLQPNEIGYCKINSITINGVALQGKEYETIVKYSLPKPILPRQTVTMQ
                     TNFEAQVPVQVRRSGRDNAEGVRYSLSQWYPKVVEYDYTGWTPNPYVAREFYGVWGDY
                     DVKITLDKSYKIGATGVLQNAAEIGWGYDKEGSDLKNTKGDNRSWRFKAQKVHDFMWA
                     ADPGYQHITRKTEGGPLLHFIFKSANANDPNWVNTANECARAYPFIKANYGAYPWSDY
                     SFIQGGDGGMEYGMGTLVKSASLGTAIHEWMHSWYQHLMGTNESLYAWMDEGFTSYAE
                     SAVSHWLKGSDSTFAWEGDYRAYITLARSKFEEPMSTHADHFATNYAYSNAAYAKGAV
                     FLAQLGYVISDSLLSKTLINYYNAWKFKHPNPNDFIRVAEKASGLELDWYKEYWMYTT
                     KTIDYAIDSLWMDENGTSVRIER"
     gene            1668..2129
                     /locus_tag="VLL95_00745"
     CDS             1668..2129
                     /locus_tag="VLL95_00745"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HSR37410.1"
                     /translation="MGTVKSVDGYNYIRYQLDIMSDDEMLERSRSFYEWVEKRRSVRQ
                     FSDKPIAREVIENIIMAASAAPSGAHKQPWTFCVVTDPELKKRIRIAAEEEEYESYHG
                     RMSEEWLQDLQPLGTDWHKPFLETSPALIVVFRRSWEYDPEGNKHQNYYVQ"
     gene            2184..2351
                     /locus_tag="VLL95_00750"
     CDS             2184..2351
                     /locus_tag="VLL95_00750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37411.1"
                     /translation="MALTHTPSPMNFLSQILQRPDNEKPYLLIPIGYPSDDCWVPDLK
                     RKGIDKVMVWY"
     gene            complement(2398..3063)
                     /gene="rsmI"
                     /locus_tag="VLL95_00755"
     CDS             complement(2398..3063)
                     /gene="rsmI"
                     /locus_tag="VLL95_00755"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: protein motif:HMM:TIGR00096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HSR37412.1"
                     /translation="MLYLVPSPIGNLADMTYRAVEVLKSVDVILCEDTRTSSVLLNHY
                     GISKPLSPYHQHNEHKVLQHLVQQLQAGKSMAVLTDAGTPGISDPAFLLVRECLRNDI
                     AVECLPGATAFVPALINSGLPSNRFAFEGFLPPKKGRHTLLTKLAEEERTIIFYESPM
                     RLVKTLDEIATYFGADRQCSVSRELTKKFEETKRGSLQEVADYFRAKGVKGEIVVVVA
                     GKE"
     gene            complement(3088..3333)
                     /gene="purS"
                     /locus_tag="VLL95_00760"
     CDS             complement(3088..3333)
                     /gene="purS"
                     /locus_tag="VLL95_00760"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HSR37413.1"
                     /translation="MTFTAHITVMPLKDLLDPQGKAVLGGLGNLGLTQVKDVRIGKHI
                     VLQVEADNAEAAKAVATEAARKVLANAVMEHFEVVIA"
     gene            complement(3333..>3587)
                     /locus_tag="VLL95_00765"
     CDS             complement(3333..>3587)
                     /locus_tag="VLL95_00765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37414.1"
                     /translation="ATTLNLLTNPWFWYGLVALLSWLMVSDLPIMSNKPKSVSLQGLM
                     PQLLVGVVCIASAAFLGWWAAPVTFAAFVILSIVFKKQIQ"
BASE COUNT          846 a          942 c          884 g          915 t
ORIGIN      
        1 ttgcgttcaa tgcgtacact ggtgccgttt tcatccatcc acaaactgtc aatggcgtaa
       61 tcgatggttt tggtggtgta catccagtat tctttgtacc aatccaactc aaggccgctg
      121 gccttttcgg ccacccggat gaaatcattg ggattgggat gtttgaattt ccaggcgttg
      181 taataattga tcagcgtctt gctcaacagc gaatcgctga tgacataacc cagctgtgcc
      241 aggaatacag cgccctttgc ataggccgca ttgctgtacg catagttggt ggcaaaatga
      301 tcggcatgtg tactcatggg ctcttcaaat ttgctgcggg ccagcgtaat gtaggcgcgg
      361 taatctccct cccatgcaaa ggtggagtcg ctccctttca accaatgtga tactgcgctt
      421 tcggcatagc tggtgaatcc ttcatccatc cacgcataca agctctcatt ggtacccatc
      481 aggtgctgat accagctgtg catccattcg tggatggcag tgcccagcga agccgacttg
      541 accagcgtac ccataccata ttccatgccg ccatcgccgc cctgtatgaa gctgtaatcg
      601 ctccagggat aggcaccgta attggccttg ataaaaggat aggcacgggc acattcgttg
      661 gcggtattca cccagttggg atcattggca ttggcacttt tgaaaatgaa atgcagcaga
      721 gggccgcctt ctgttttgcg ggtgatgtgc tggtagccgg gatcggcagc ccacataaaa
      781 tcgtgcacct tctgcgcttt gaaacgccag ctgcgattat cgcctttggt gttctttaaa
      841 tcgctgcctt ccttatcgta gccccagcca atttctgctg cattctgcag cacaccggtg
      901 gcgccgatct tataagattt atcgagggta atcttcacgt cataatcgcc ccacacgcca
      961 taaaattcac gggcaacata tgggttaggc gtccaaccgg tataatcgta ttccaccact
     1021 tttggatacc attggctcaa gctgtaacgt accccttcag cattgtcgcg gccactgcgg
     1081 cgcacctgca caggtacctg ggcttcaaaa ttggtttgca tggtcacggt ttgcctgggc
     1141 aaaataggtt tgggcaaact gtattttaca atggtttcgt attccttccc ctgcaacgcc
     1201 actccgttga tcgtaatgct gttgattttg cagtatccaa tttcgttggg ttgcagcttg
     1261 ctgatgcgat ccttcaccct ggggtcccag tcaatccttt cgctgccgtc gcgattgcgt
     1321 cccaccacct tggtgcccag ttcgcggctc cgtacatcca tgctgctgtt gggctgaaag
     1381 gcattccagt acaaatggaa ataaatctcc ctgagcgtat cgggagaatt gttcgtgtag
     1441 ttgatggttt gcttaccggt aacaatattg gtttgtacgt tcaaattaac gtccatcaca
     1501 tagctgatct gctgctgcca acggtcgggc tgggctgtaa tcattcccgg cattcccaca
     1561 gccagtaaca tcagtgtgaa taagattcga ttcattttgc tgcgatcgtt tttaaatttt
     1621 cgacaaaata aggctgccat tcattactaa ccttcaaatg ccgccctatg ggtactgtta
     1681 aatcggttga cgggtacaac tacatcaggt accaactcga catcatgtca gacgacgaaa
     1741 tgctcgaacg cagccgctcc ttttacgaat gggtggaaaa gcgcaggtct gtaaggcaat
     1801 tcagcgacaa gcccattgcc cgggaggtga ttgaaaacat catcatggcc gcctctgccg
     1861 cccccagcgg tgcccataag caaccctgga ccttttgcgt ggttaccgat cccgaattga
     1921 aaaaacgcat ccggatcgct gccgaggaag aagaatacga aagctaccat ggacgcatga
     1981 gcgaagaatg gctgcaggac ctgcaacccc tgggaaccga ttggcacaaa cctttcctgg
     2041 aaacgtcccc cgccctgatc gtggtgtttc gccgttcgtg ggaatacgat ccggaaggca
     2101 acaaacacca gaattattat gtgcagtaaa gttgtggcct ggcagtaggc tttctgctgg
     2161 cagccattca tcatgcagga ttagtggcgc ttacacatac gccttcgcct atgaatttcc
     2221 tgtcgcaaat attacagcgg cccgataatg aaaaacctta tttgctcatc cctattggct
     2281 accccagtga tgattgctgg gtgcccgacc tgaagcgaaa aggcatcgac aaagtaatgg
     2341 tttggtattg atgccgtagg cggtattagt tgtataaatc aatggtgact aactcattca
     2401 ttcttttcct gccaccacca ctacgatctc ccctttcacc ccttttgccc ggaagtaatc
     2461 agctacttcc tgcaaagaac cacgtttggt ttcttcaaat ttcttggtga gttcgcggct
     2521 cacgctgcat tggcgatcgg ccccaaaata ggtagcgatt tcatcgaggg ttttcaccag
     2581 ccgcatgggg ctctcataaa aaatgatggt gcgttcttcc tccgccagtt tggtaagtaa
     2641 agtgtggcgt ccttttttag gaggcagaaa tccttcgaag gcaaagcgat tggaaggcaa
     2701 cccgctgttg atgagcgccg gcacaaaagc agtagcgccg ggcaggcact caacggcaat
     2761 gtcgttgcga agacattcac gcaccagcag aaaggcgggg tcgctgatgc cgggcgtacc
     2821 ggcatcggtt agcaccgcca tgcttttgcc cgcctgcagt tgctgcacca aatgctgcag
     2881 cactttgtgc tcgttgtgtt ggtggtaggg agataatggc ttactgatgc cgtaatgatt
     2941 caacaggacc gatgaggtcc tcgtgtcttc gcacaagatc acatccaccg atttcagcac
     3001 ttctactgcc cggtaggtca tatcggccag gttgccaatg ggagatggta cgaggtaaag
     3061 caaagccaaa tgggaatgct gaatgcgtta agcgatcaca acttcaaaat gctccataac
     3121 cgcgttggcc agtactttcc gggcagcttc ggtggccact gctttggcag cctctgcatt
     3181 gtcagcttcc acctgcagca caatgtgctt gccaatgcga acatccttta cctgcgtaag
     3241 gccaaggttt cccaaaccgc caagtacggc tttgccttgg ggatccagca aatctttcag
     3301 cggcattaca gtgatatgag cagtaaaagt cattattgaa tttgtttttt gaatacgata
     3361 gaaagaatga cgaatgcggc aaaggtaacc ggcgccgccc accaacccaa aaacgcggcg
     3421 ctggctatgc ataccacccc caccagcagt tgtggcatca aaccctgcag cgaaaccgat
     3481 ttcggtttat tgctcatgat aggcaggtcg cttaccatca gccagctcag caaggctacc
     3541 aagccatacc agaaccatgg gttggtaagc aggttcaggg tggtggc
//
LOCUS       DATIQF010000049         2252 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_16038, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000049 DATIQF010000000
VERSION     DATIQF010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16038"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..869
                     /locus_tag="VLL95_00770"
     CDS             <1..869
                     /locus_tag="VLL95_00770"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HSR37415.1"
                     /translation="SDGLWVAEGFTQYFGDLVELRSGLSTESQWLNNLSGLINTKQHR
                     PGGTLFNVIENSQYAVFTDAGVSVDKTNFENTFISYYTTGAATALALDLELRTRFNKT
                     LDDYIRLLWQRHGKTEKAYSIRDLQDALAATTGDAKHAADFFARYIYDSQPYDYASGL
                     EAMGLQVTARDAGKAWAGPWRLEERGGKTIIANSTRKGTPLYEAGIDAGDELVSVDGQ
                     KIRNSNDFNNWLSGKKPGDKASVVIRHRGREATLEMTLQESPDITVQPNAGATEAQLA
                     KRKAWLQSQQRP"
     gene            963..2234
                     /locus_tag="VLL95_00775"
     CDS             963..2234
                     /locus_tag="VLL95_00775"
                     /inference="COORDINATES: protein motif:HMM:NF016041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HSR37416.1"
                     /translation="METYGKILLIAMPAFLVLVLFEKWYGWRKGKDTVDNMDMISSLS
                     SGITNVTKDVLGLSIGILSYGFLLKHLALFDIKNTLLTYVIGFIIIDFQAYWVHRWSH
                     QINIFWNRHIIHHSSEEFNLACALRQSISSVVNLFTFLLIPAAILGVPAQVIATIAPL
                     HLFAQFWYHTRHIGKMGFLEKIIVTPSHHRVHHAINPEYLDKNLAAIFICWDKWFGTF
                     QEELDNVPPVYGITRPAATWNPIKINFQHLWLLMKDAWHTRNVWDKLRIWFMPTGWRP
                     ADVVDKYPVFKIDDVYHFEKYHPKHHPLLPAWSWVQLTMTLLFISYLFGNIAGIGSPN
                     MFVYGGFVFLTVYANTELMDRNANAMFWEGAKNLFGIVWIIQTGDWFGISEFIVWAKT
                     LALLYFVVATLVVSLFCLQIRKEEAGKLPAF"
BASE COUNT          568 a          594 c          563 g          527 t
ORIGIN      
        1 tgagtgatgg actgtgggtg gctgaagggt tcacgcaata ctttggcgac ctggttgaac
       61 tgcgaagcgg gttgagcacc gaatcacaat ggctgaataa cctgtcgggc ctcatcaaca
      121 ccaagcaaca ccgcccgggt ggcactttgt tcaacgtgat tgaaaacagc cagtatgcgg
      181 tatttactga tgccggtgtt tcggttgaca aaaccaattt cgagaacact ttcatttcct
      241 attacaccac cggggcggcc acggcactgg cattggacct ggaactgcgc acccgcttca
      301 ataaaacact cgacgactat atacgcctgc tttggcaacg gcatggaaaa accgaaaagg
      361 cttattccat ccgggacctg caggatgctt tggctgccac caccggggat gcaaagcatg
      421 cagccgattt ttttgcccgt tacatctacg actcacaacc ctacgactat gccagcggtc
      481 tggaggcaat gggcctgcag gtaacagcca gggatgccgg caaagcatgg gccgggccat
      541 ggcgcctgga ggaacgcgga ggcaagacca taatagccaa cagcacacgc aaaggcacac
      601 cgctttatga ggcaggcatc gatgccggcg atgaattggt gtcggtggat ggtcagaaaa
      661 tcaggaacag caacgatttc aacaactggc tgtcgggcaa gaagcccgga gacaaagctt
      721 ctgtcgtcat caggcaccgt ggccgggaag cgacgcttga aatgacgctg caggaatcgc
      781 cagacattac cgtacagccg aatgccggtg ccactgaagc acaactggcc aaaagaaagg
      841 catggctgca gtcgcaacag cgcccatagg ttcaaacgaa cgaccacact ccacttttta
      901 caaaaagagc aggctaatgc actgcggcct aaatttgaac caacgataaa tgggcttgac
      961 tgatggaaac ctatggtaaa atccttttga ttgcaatgcc ggctttcctg gtattggtgc
     1021 tgtttgaaaa atggtatggc tggcgcaagg gcaaggatac tgtcgacaat atggacatga
     1081 tctccagcct gagcagcggc attaccaacg tgaccaagga tgtgctgggc ctgagcatcg
     1141 gcatactcag ttatggtttc ttattgaagc acctggcatt gtttgacatt aaaaacaccc
     1201 tcctcaccta cgtcattggt tttatcatca tcgatttcca ggcgtattgg gtgcatcgct
     1261 ggagccacca aatcaacatt ttctggaacc gccacatcat ccatcacagc agcgaggagt
     1321 tcaacctggc ctgcgcattg cgccaaagca tttccagtgt cgtcaacctg ttcacttttc
     1381 tattgatacc cgctgccata ctgggcgtgc cggcacaagt gattgccacc attgcgccgc
     1441 tgcacctgtt tgcgcagttc tggtaccata cccgccacat cggcaaaatg ggttttcttg
     1501 aaaagatcat agtcaccccc agccatcacc gtgtgcacca tgccatcaac ccggaatacc
     1561 tcgataaaaa ccttgccgcc attttcattt gctgggacaa atggttcggc actttccagg
     1621 aagaactgga taacgtgccg cctgtttacg gcattacccg tcccgccgcc acctggaatc
     1681 ctatcaagat caatttccag cacttgtggc tgctgatgaa agatgcgtgg catacccgca
     1741 acgtgtggga caaactgcgc atctggttca tgcctaccgg atggcgtcct gccgacgttg
     1801 ttgacaagta cccggtattc aagattgacg atgtgtacca cttcgaaaaa taccatccca
     1861 aacatcatcc gctgctgccg gcatggagtt gggtgcaact aacgatgacg ctcctcttca
     1921 tcagctattt gtttggcaat attgccggca tcggttcgcc caacatgttc gtatatggcg
     1981 gcttcgtctt tttgacagtg tacgccaaca ctgaactgat ggaccgcaat gccaacgcga
     2041 tgttttggga aggcgccaaa aacctatttg gcattgtttg gatcatccaa acaggtgatt
     2101 ggtttggcat cagcgaattc attgtttggg ccaagacact tgctttgctg tattttgttg
     2161 tcgccaccct ggtggtgagt ttgttttgct tgcaaatcag gaaagaagaa gccgggaaac
     2221 tgccagcctt ctagtcattc aattaaacat tc
//
LOCUS       DATIQF010000050         4943 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_213691,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000050 DATIQF010000000
VERSION     DATIQF010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4943)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4943)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4943
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213691"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..802
                     /locus_tag="VLL95_00780"
     CDS             <1..802
                     /locus_tag="VLL95_00780"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HSR37417.1"
                     /translation="DRQTVQLEGYMTHLLTNDAVSFLYRKHQQPFFLSIQFNAPHWPW
                     QAPGDSAYPLGDKEWKENGSPQKYAAMVASMDSAIGRIMQTLQATGLSKNTMVIFTSD
                     NGGERFSDNGGLRERKMQLWEGGIRVPAIAYWPGKIPANKVISTPITHMDFTATIMAL
                     AKAKTNASFPLDGMDISSWLFTGQAPDTSRVFCWRVTQRFQQKAIRMGNWKYLQTETG
                     EYLFELASDPYERNSLKVAFPQKLQAMKEALNAWETTMLLPVPLASER"
     gene            1081..3555
                     /locus_tag="VLL95_00785"
     CDS             1081..3555
                     /locus_tag="VLL95_00785"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HSR37418.1"
                     /translation="MKIVAPLVGFLLLLQVANGQTLNGMSTGNYAGIVGVSFNPASIV
                     DSRYKFDLNIAAAQYYFGNNYLYAKPLLFARRMLNQSPYNGSFAAVKEDLMTPIVPPP
                     SDKVRGRQNTEFLFPLSFMLTTGKRSAIAISLRNRYEITVDNLNPQTADMLYSELRDP
                     TLHGVSMNNDGLKTKFMNWQEVGFTYGRVLLNANKHFFKFAVTGKWLGGNAAGYIQAN
                     ELSVKFSNPTTMSMQSPAIQYATTARADFGLFTRRDMVSDIQASNFGFDAGLVYEFRG
                     RVANFRYTDEDYQSRLRRDMNKYTFRLGVTLNDVGVLHYDRLPLTRDHSAAINNWNFG
                     GVKANNISEWDTAYSKQVSFDPNSPEDFSVALPTALILNFDWHLFKGFYVNAAAQRRV
                     YRIEDKKPASTRLFTGEWFAITPRFEGRGFGLYIPLLLRPDYTQIGATVRLGPFWVGS
                     NNLLALVQNAQVPTADIHAGFRIPIGFGKPTKLLMSIENKSGLKISDDYERQMESVTS
                     KTNALETRIAILEKMADSAYRTPPTVIVNNYVVDSAGKPKLQTQVAQTSGTATSRQPA
                     PSGYTKAQVDSINAENEKLRKEVEKRMKEDGVTPPRKPKPTRNERKAQKRQQRFEKEQ
                     QQFQRALQDEMRRTRRQQAATGVAITGAIAANAAVQSNAGGKADTVVVRDTVVVEKVR
                     RDTVYVKDTTQTSEKTATGPTQKRQPQLSPDKSAIPELRTARIFFASGSATISSNYTS
                     VLNRVAAWMLKNPDRRVLITGVTDATGSASVNRALAQRRIDATIKALVSRGIGASRFD
                     KDLNIATTKSTNASASDRRVDISAQQ"
     gene            complement(3655..4092)
                     /locus_tag="VLL95_00790"
     CDS             complement(3655..4092)
                     /locus_tag="VLL95_00790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37419.1"
                     /translation="MKKFLIVLSLVFIGYASQAQELGIRLGNVTGGSAAVDGLFSLGK
                     FSRVHANVSFGSGLGIEALWDFLYKPLDNEAFHWYVGAGPSLLIDDPFKLGVAGEIGL
                     GYYFKGVPISLSADWRPTFVLVEKTSMDWGGFGVNVRYVFNKK"
     gene            complement(4233..>4943)
                     /locus_tag="VLL95_00795"
     CDS             complement(4233..>4943)
                     /locus_tag="VLL95_00795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37420.1"
                     /translation="AVNSKLAFRSLSDYTRGDQKWNVQVGYVNGKPVLLKMFAADSRQ
                     QKWWIYTDTATGKVNFLKEETAGKDGKGVRNVFGYQDTALIVSKAGQNPYEAADANDF
                     RLKAAEVNKVYSEVLAAVEADRPDLSKAANDARRQNAQFFAAGNEPGWSLVINPSKGE
                     VVYTGDYGKETKSFGYSTPDQGPSGESIYEVRSLKENMRITIASKWCTDDAGKVYPYT
                     VGIELNGKSYAGCGILLQ"
BASE COUNT         1355 a         1297 c         1171 g         1120 t
ORIGIN      
        1 tgaccggcag accgtgcagt tggaaggata catgacccat ttgttgacca atgatgcggt
       61 tagtttcctg tatcgaaaac atcagcaacc tttttttctc agcatccagt tcaatgcgcc
      121 acactggcca tggcaagcgc ccggggatag tgcataccca ttaggtgaca aggaatggaa
      181 agagaatggc tcccctcaga aatacgcggc catggtggca agcatggata gcgccatcgg
      241 aaggattatg caaacattgc aggccacagg actttccaaa aacacgatgg tgatatttac
      301 cagcgataat ggtggtgaac gcttttcaga caacggtggc cttcgggaaa gaaaaatgca
      361 attgtgggaa ggaggcatca gggtgcctgc tattgcatac tggcccggaa aaattccagc
      421 caacaaagtg atcagtacac ccatcacgca catggatttc actgccacca tcatggcact
      481 ggccaaggca aaaaccaatg cctcatttcc actcgacggt atggatatca gctcctggct
      541 ttttaccggc caagcaccgg atacttcacg ggtattctgc tggcgggtaa cgcaacgctt
      601 ccagcaaaaa gccatcagga tgggcaattg gaaatacctg caaacagaaa cgggcgaata
      661 cctttttgag ctggcaagtg atccctatga acgcaacagt ctgaaagtgg cctttccgca
      721 aaagttgcag gcaatgaaag aagcactcaa cgcatgggaa acaacaatgc ttctcccggt
      781 tcctcttgca tctgaacggt gatgtgccag ctttcatcaa aggcatgcaa caaaatttca
      841 gcattgcctt tcatgcctta cccgctttga gcccttccaa tgaaggcttt cgccggtgct
      901 tcttacttta gaaattgcaa ctttgggcaa attgcttcat gctatggtcc aataacctgt
      961 ttcattttgg cgtttcaaaa caaaatttga agtaattctg tagcggctta aacactcagc
     1021 cgctaatttg ctgcaagcgc accaattccc taacttgcta tacactgaaa atccttacaa
     1081 atgaaaattg tagctccact ggttggtttt cttcttttgc tacaggtagc aaatggtcag
     1141 accctcaacg gaatgtcaac cgggaactat gcaggcatcg tcggtgtcag tttcaatcct
     1201 gccagtattg tagacagccg atacaaattc gatctcaata ttgccgccgc acaatattat
     1261 ttcggcaaca actatctcta tgccaaaccg ctgttgtttg cccgcagaat gctgaatcaa
     1321 agcccttaca acggctcctt tgccgctgtg aaagaggatt taatgacccc aattgtgccg
     1381 cctccgagtg acaaggttcg cggcaggcaa aacaccgaat tcctgttccc gctttccttc
     1441 atgcttacta cgggaaaaag atcggccatt gcaatcagtc ttcgcaaccg ctatgagatc
     1501 acggtagaca acctcaatcc ccagactgcc gacatgctgt acagtgagct ccgcgatcca
     1561 acgctgcatg gcgtaagtat gaataacgac ggcttaaaaa cgaaattcat gaactggcag
     1621 gaagtaggct ttacttatgg ccgtgtactg ctgaacgcca acaagcactt tttcaaattt
     1681 gccgttaccg gcaaatggct gggtggcaac gcggcaggtt atatacaggc caatgagttg
     1741 agcgtaaagt tctcaaaccc caccaccatg agtatgcaat cccctgccat tcagtatgcc
     1801 acaacagccc gggcagattt cggcttgttc acccgcaggg atatggtctc cgatatccag
     1861 gcttccaatt tcgggtttga tgcgggtttg gtatacgaat tcagaggccg ggtggccaat
     1921 tttcgataca cggatgagga ttaccaaagc cggttgcgcc gggatatgaa caagtatacc
     1981 tttcggttgg gggttaccct gaatgatgtt ggcgtgcttc attacgatag attgccgcta
     2041 acccgcgacc acagtgcggc catcaacaac tggaatttcg gtggcgtgaa agccaacaac
     2101 atcagcgaat gggataccgc ctattccaaa caggtgagtt ttgatcccaa cagccccgaa
     2161 gacttttcag tggctttgcc aacagcactc attttgaatt tcgactggca tctgttcaaa
     2221 ggcttttatg tgaatgcagc tgcgcaacgg agagtatacc gtatcgaaga caagaaacct
     2281 gcttccaccc gtttgttcac cggtgagtgg tttgccataa cgccaagatt cgaaggaagg
     2341 ggtttcggat tatacattcc actgctcctc cgccctgatt atacacagat cggcgccacg
     2401 gtacgcctgg gtccgttttg ggtgggctcc aacaatttgc tggccctggt gcaaaacgca
     2461 caggtaccca ccgccgacat acacgccggc tttcgcatcc ccatcggctt cggcaagccc
     2521 accaaattgc tgatgtccat tgaaaacaaa tcaggcctga agatctctga cgattatgaa
     2581 agacaaatgg aaagcgtgac cagcaaaacc aatgccctgg aaacacgaat tgccattctg
     2641 gaaaagatgg cggacagcgc ctaccgcact ccgcctacag tcatagttaa caattacgtg
     2701 gtagacagtg ccggcaaacc caaactgcag acacaggtgg ctcaaacttc gggcaccgct
     2761 accagcaggc agcctgcacc cagcggttat acaaaggcgc aggtggacag catcaatgcg
     2821 gaaaatgaaa agctgcgcaa agaggtagaa aagcgaatga aggaagatgg cgtaacgcca
     2881 ccccggaaac ccaagcctac caggaatgaa agaaaagcgc agaagagaca gcagcgcttt
     2941 gaaaaggaac aacaacaatt ccaaagggct ctgcaggatg agatgagaag aacccggcgc
     3001 cagcaagccg ccacaggtgt tgccataacc ggtgccatcg ccgccaatgc agcagttcag
     3061 tcaaatgccg ggggcaaagc agataccgta gtggtgaggg atactgttgt ggttgaaaaa
     3121 gtaagaagag acaccgtata cgtgaaggac actacgcaaa cttctgagaa gaccgcaacc
     3181 ggtcctacgc aaaagcgcca acctcagctc agcccggaca agagcgctat tccggaattg
     3241 cgtacggcaa gaatattctt tgccagcgga agtgctacca tcagcagcaa ctacacctct
     3301 gtgctgaaca gggtggctgc atggatgctg aagaatcctg acagaagggt attgatcact
     3361 ggtgtaaccg atgccacagg atcggcaagt gtgaaccggg cattggccca acgcaggata
     3421 gatgccacca tcaaagcgtt ggtatcccgt ggtatcggtg cctcaaggtt cgacaaagac
     3481 ctgaacattg ccaccaccaa atcgaccaat gcctcagcgt ctgaccggag ggtagacatt
     3541 tcggcacaac aataagtaag agtgcattgc aaaacaaaag cgcctgctcc gcaagaagag
     3601 caggcgcttt tttatttaca gttcagggca aaaagaatcc ttctgacctg gctgctattt
     3661 cttattaaac acataccgca cgttcacccc gaatcctccc caatccatgc tggttttctc
     3721 taccaataca aaggtgggac gccagtcggc actcaatgaa atgggcacac ctttgaaata
     3781 atacccaagg ccaatttcgc cggctacacc caacttaaaa ggatcatcaa tgagcaatga
     3841 aggaccggca cctacgtacc aatggaaggc ttcattgtcc agcggcttgt ataaaaaatc
     3901 ccacagggct tcaataccaa gaccgctacc gaaagataca ttggcatgaa cgcggctgaa
     3961 cttgcccagg ctgaacaaac catctacggc agcactgccc ccggtcacgt tgcccaggcg
     4021 aatacccaat tcctgtgcct gcgacgcata cccgatgaat accaacgata acacgattag
     4081 aaactttttc atgtacactg cattttgctg atggttcaaa atacaggcga aacaagcagt
     4141 tatcgtgccg aaaaatgctc agatggttct gcagaatgtg aaaaacccag ccaacggctg
     4201 ggtttgaaga accaataggg tgttcgcagg tcttactgca gtaaaatgcc gcaaccggca
     4261 taagattttc cattcagttc aatgcccact gtatagggat atactttccc ggcatcatca
     4321 gtacaccatt tggaggcaat ggtaatgcgc atgttttctt tcagggaacg cacttcgtaa
     4381 atgctttcgc cactcggtcc ctggtcgggt gttgaatacc caaacgattt ggtttccttg
     4441 ccatagtcgc cggtgtacac cacttcgcct ttgctggggt tgatcaccag tgaccatccc
     4501 ggctcattgc cagcagcaaa aaactgtgcg ttttgccggc gggcatcatt ggcagccttg
     4561 ctcaaatcag gtctgtcggc ttcgacagcg gccagcactt cggaatacac tttgttcact
     4621 tcggcggcct tcaacctgaa gtcattggca tcagctgcct cgtaaggatt ctgacccgcc
     4681 tttgaaacaa tcaaagcggt atcctggtat ccaaatacgt tgcggacgcc tttgccatcc
     4741 ttgcctgccg tttcttcttt caggaaattc actttgccag tagcagtgtc ggtgtagatc
     4801 caccatttct gttgccggct gtcggcagca aacattttca gcaagaccgg cttcccgttc
     4861 acatatccaa cctggacatt ccatttttgg tcgccacggg tatagtcgga caggctgcgg
     4921 aaggccaact ttgaattaac ggc
//
LOCUS       DATIQF010000051         3259 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_76884, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000051 DATIQF010000000
VERSION     DATIQF010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3259
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76884"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1812)
                     /locus_tag="VLL95_00800"
     CDS             complement(<1..1812)
                     /locus_tag="VLL95_00800"
                     /inference="COORDINATES: protein motif:HMM:NF040057.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative LPS assembly protein LptD"
                     /protein_id="HSR37421.1"
                     /translation="MKDSLTKALPSDTTKKTKTPAPQKDSLVTVTDTLNLPISNDSLD
                     APVHYEASDSGVLDIPNRKFFLYGKAHTTYQTLDLKAATIELDNENNIAKAYFTKDST
                     GKVLDRPVLVDGDMTSESDSMFYNFKTQRGLTKSTYTKQGEMFVYAERIKKLSGNSFY
                     ASQGRFTTCNLDTPHFAFRAPKMKLVNNKWAYSGLAYPEFESVPIPVGLPFGIYPLSQ
                     GRHSGLLAPQFTATESFGLGLEGLGYYKVLNDYFDATIRTNIYSYGGYAINFSPNYRV
                     RYRFNGGLRMSFQNTRINFKGDPDFVSTKTFNFSWVHSMDSKARPGTNFSANVNFGSI
                     QYNQFIPNNPQLNFTNQLASSIQYSNTWGNGRYNLSVTGNHSQNNNTGQYNISLPNVN
                     MTVNTFYPFKPKESVGSAKWYEKVGFGYNGQMLNQFSFFDSDSPRIKYNLQQIIDTMQ
                     WGAQHIIPINLALPPMGSVMISPAVNFTERWYGQQVLRKWNDSKSKVDTIVTKGFFAA
                     REVSFGIGAQTAIFGTFNFSKNSNVRAIRHVIRPSISANYKPDLQKQFYYMAQVDTTG
                     RKLPFSVFDGSLFAPFAQGAFGGMSFGLQNNVEMKVRD"
     gene            2002..2988
                     /locus_tag="VLL95_00805"
     CDS             2002..2988
                     /locus_tag="VLL95_00805"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: protein motif:HMM:NF013670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HSR37422.1"
                     /translation="MLKTNILLVFMLCALWAAAEGPGNDQKPPLKTVVIDAGHGGPDG
                     GAKGEISREAILALEISLRVRDLMKQEIPDLNVLMTREQDVLPGYQTNKNAALRWRAD
                     YANRSGGELFISIHLNASAGNQRYAKRQVGTKEQTYYVYQGKGKKKKKIAKTRTVPVY
                     ERYKLPATVSGTQTYILARDWYNQKVKNVGNKTEIYETADQDTLDQELLQMDPVEARI
                     RAQQYTKYFFQKSMTLATYVEEEFARQGRRSWGVLQRDWDGIWVLQATQMPSILVETG
                     FVDNPEEEMYLASEAGQLEVARAVVNAVKRYKAMLENPEKAVTSRTEEQPGQ"
     gene            3076..>3259
                     /locus_tag="VLL95_00810"
     CDS             3076..>3259
                     /locus_tag="VLL95_00810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37423.1"
                     /translation="MAFKISNETKVGALTVITVTLFILGFNFLKGKNPLKRSQYYYAR
                     FDAIEGLVPSNPVIMNG"
BASE COUNT          795 a          724 c          923 g          817 t
ORIGIN      
        1 gtcccgcact ttcatttcca cgttgttttg gaggccaaaa ctcatgccgc caaaagcgcc
       61 ctgtgcaaag ggagcaaaca atgatccgtc aaaaacactg aagggaagtt ttctaccagt
      121 agtgtccacc tgcgccatgt aatagaattg cttttgcagg tcgggcttgt agttggcact
      181 gatgctcggg cggatcacat gcctgatggc tcttacgtta ctgtttttgc tgaagttgaa
      241 agtgccgaaa atggcggttt gggcaccaat gccaaaactc acttcgcggg ccgcaaagaa
      301 gcctttggta acgatggtat ccaccttgct cttggagtca ttccacttgc gcaatacttg
      361 ctgtccgtac cagcgttcag taaagttcac ggcgggtgaa atcatgacgg aacccatggg
      421 tggcagggcc aggttgatgg ggatgatgtg ctgtgcgccc cactgcatgg tgtcgatgat
      481 ttgctggagg ttgtatttga tgcgagggct gtcgctgtcg aagaaagaaa actggttcag
      541 catttgtcca ttgtagccaa agcccacctt ttcgtaccat ttggctgagc ccacagattc
      601 tttgggtttg aacgggtaaa aagtattcac cgtcatgttc acgttgggca gacttatgtt
      661 gtactggccg gtattgttgt tctggctgtg gttaccggtt acgctcaggt tgtatcggcc
      721 gttgccccag gtattggaat actgtatgct ggaggcgagc tggttggtga aattcagctg
      781 cgggttgttg gggatgaact ggttgtactg gatgctgcca aaattcacgt tggcgctgaa
      841 attggtaccc ggtcttgctt tgctgtccat gctgtgcacc caggagaagt tgaaggtttt
      901 ggtgcttaca aaatcaggat cgcctttgaa gttgatgcgt gtgttttgaa aactcatgcg
      961 aaggcccccg ttgaagcggt aacgcacccg gtagttgggc gaaaagttga tggcatagcc
     1021 gccataactg tatatgttgg ttcggatggt ggcgtcaaaa taatcgttga gcactttgta
     1081 atagcccagt ccttccaggc ccagcccgaa gctttcggtg gctgtaaact ggggagccag
     1141 caatccggaa tggcgaccct ggctgagggg ataaatacca aagggcaacc cgaccggaat
     1201 gggcacgctt tcaaactcag gataagccag gccgctgtaa gcccatttgt tgttcaccag
     1261 tttcattttc ggtgcccgga aagcgaaatg gggtgtatcg aggttgcagg tggtaaagcg
     1321 gccctgggag gcataaaaag agttgccgga aagttttttg atgcgctctg cgtacacaaa
     1381 catttcgcct tgcttggtgt aggtcgattt ggtgaggccc cgctgtgtct tgaagttgta
     1441 aaacatgctg tcgctttccg aggtcatgtc gccatccacc agtaccgggc ggtccagcac
     1501 tttgccggtg ctgtctttgg tgaagtaagc tttggctatg ttgttctcat tgtccagttc
     1561 aatggtcgca gctttcaggt cgagcgtctg gtaggttgtg tgggccttgc cgtacaggaa
     1621 aaattttcga ttgggtatgt cgagcacacc actgtcggat gcttcgtaat gcaccggtgc
     1681 atccaggctg tcgttggaga tgggaaggtt gagtgtatcg gtgacggtga ccagggaatc
     1741 cttctgcggg gccggtgttt ttgttttttt ggtggtatcc gaaggcaaag cttttgttaa
     1801 actgtccttc aattgtgacg caggtttaac ctgagcccag ctacaaagcg ttataaacaa
     1861 aagtggaaaa atgtgaatga taccaagggg tacctttgtt ttattttcac ttgccttggt
     1921 taacataggt gttggtaggc gaaagtaatg tttaagaaaa acgtccttgt gaagaatagt
     1981 ataaagtgta aaacggcaaa gatgctgaaa actaacattt tactggtgtt tatgctctgt
     2041 gcattgtggg ctgctgctga aggacctggc aatgatcaga agcctccctt gaaaacggta
     2101 gtgattgatg ccgggcatgg cggtcctgat ggtggcgcca aaggtgaaat ttcgagagaa
     2161 gctatcctgg cactggagat cagcctgcgg gtacgcgacc tgatgaagca ggagattcct
     2221 gacctgaacg tactgatgac ccgtgagcag gatgtgctgc cgggctatca aaccaataag
     2281 aacgccgccc tccgctggcg ggccgattac gccaaccgca gtgggggcga attgtttatt
     2341 tccattcacc tcaatgcctc ggccggcaac cagcgctatg ccaaaaggca ggtaggtacc
     2401 aaggagcaga cctattacgt gtaccagggc aaaggcaaga agaaaaagaa aattgccaag
     2461 acccgcacgg tgcctgtata tgaacgatac aaactgccgg ccacggtgag cggtacgcag
     2521 acgtacatcc tggcccgcga ctggtacaac cagaaagtga agaacgtagg caacaaaaca
     2581 gagatctacg aaactgccga ccaggatacc ctggaccagg agttgctgca gatggacccg
     2641 gtggaagcca ggatccgggc gcagcagtac accaagtatt ttttccagaa gagcatgaca
     2701 ctggcaacgt acgtagaaga agaatttgcc cgccagggac gccgcagctg gggtgtgctg
     2761 caacgcgact gggatggcat ctgggtgctg caggccacac aaatgccttc aattttggtg
     2821 gaaacaggat ttgtagacaa cccggaagaa gaaatgtacc tggccagtga agccggtcaa
     2881 ttagaagtgg cccgggccgt agtgaatgcg gtgaagcgat acaaggccat gttggaaaat
     2941 cctgaaaaag cagttacctc caggaccgaa gaacagcccg gccaataaac attaaaaagg
     3001 ctggagaaaa gcatgagtgt acaccgctca tgcttttttt gtggggttgc acaaggtttg
     3061 tatttatttt gccctatggc ttttaaaata tccaatgaaa ccaaggttgg tgcactcacc
     3121 gtcatcacag tcacgctgtt tatactgggc ttcaatttcc ttaaaggaaa gaatccgttg
     3181 aagcggtctc aatattatta tgcccggttc gatgccatcg aaggtttggt gccctccaac
     3241 cctgtcatta tgaatggcc
//
LOCUS       DATIQF010000052         1548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_107388,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000052 DATIQF010000000
VERSION     DATIQF010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1548
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107388"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            71..>1548
                     /locus_tag="VLL95_00815"
     CDS             71..>1548
                     /locus_tag="VLL95_00815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37424.1"
                     /translation="MPPVSMPNTEDDVHVAMLQGWKENKDYLLSQKEGEALAAHYRYL
                     YSLPQMKAFFDPMLMAGFEFPNWQQWHAAYFSKGYLLIITTEPYAEPDIFIRFAKVFD
                     QTYTRFLDLQRAEAQAREARIEAALEKVRSRTMAMQKSGDLNSAAADMFKEIQALGMQ
                     PWGCGFNIFDSDEKAVTQYMSLADGGISPPFRTPLTEDPFFIEIYNARQRKDELLVME
                     SAGESLAETYRYMFGLPDSGEIFGDLENAGFEMPKYQITHCAYFSQGYLVFITYQQVT
                     EAHDIFKRFAKVFDQTYTRFLDLQKAEAQAREAQIEAALERVRSRSMAMHDSKELGEV
                     AKVMFNQMKLLGGELFAFGIVLCDKDENVVEQWHGLGEGDMMTPFQVPVDLDYIHRYR
                     YDQWKAGVELFSIEIPSDYIARHFELMFALPSVKLVMDDLKSKGIELAHPSWEIDYSA
                     SFRYGYFLVSSLQPYAEEKIFPRFAKVFEQAYTRFLDLQKAEA"
BASE COUNT          413 a          360 c          391 g          384 t
ORIGIN      
        1 aaccggcttt gcactttgta atgcagagga tggccatgat taattctggt ttgccaatga
       61 aatgggcgtc atgcccccgg tgagtatgcc caataccgaa gacgatgtgc atgttgccat
      121 gctgcagggc tggaaagaaa acaaggacta tctcttatca cagaaagaag gggaagcgct
      181 ggcggcacat taccgttacc tctattcact gccccaaatg aaggccttct tcgatccaat
      241 gttgatggcc ggtttcgaat ttcccaactg gcaacaatgg cacgctgcct atttttcaaa
      301 aggctacctg ctcatcatta ccacagagcc ttatgctgag cctgatattt tcatacgctt
      361 tgccaaagtg tttgatcaga cctatacccg cttcctcgat ttgcaaaggg ccgaagcaca
      421 ggcaagagaa gcaaggatcg aagcggcgct ggaaaaagta cgcagccgca cgatggccat
      481 gcagaaaagc ggagacctga acagcgctgc agccgacatg tttaaagaga tccaggcgct
      541 gggcatgcaa ccctggggct gtggtttcaa tattttcgac agcgacgaaa aagcggtaac
      601 gcaatacatg agcctggctg atggcggtat ctctcctcct ttcagaacac cgctgacgga
      661 agatcctttt ttcatagaga tttacaatgc ccggcaacgc aaggatgaac tactggtgat
      721 ggaatcagca ggtgaatcgc tggcagaaac gtatcgctat atgtttggcc ttcccgattc
      781 tggtgaaata ttcggagact tggaaaacgc tggcttcgaa atgcccaaat atcagattac
      841 gcactgcgcc tatttttcac aaggctacct ggtttttatc acctaccaac aggtgacgga
      901 ggcacatgat attttcaagc gttttgccaa agtgtttgat caaacctata cccgcttcct
      961 cgatctgcag aaagcagaag cacaggcaag ggaagcgcag attgaagcgg cactggagcg
     1021 ggtgcgatcc aggagcatgg cgatgcacga tagcaaggaa ctgggcgaag tagccaaggt
     1081 gatgttcaat caaatgaaat tgttgggcgg tgagcttttt gcttttggta ttgtactgtg
     1141 cgacaaggat gaaaacgtag tggaacaatg gcatggcctg ggcgaaggcg atatgatgac
     1201 accattccag gtgcctgttg accttgacta tattcaccgc taccgttacg accagtggaa
     1261 ggcaggtgtt gaacttttct ccattgaaat tccgtctgac tatatagccc gccactttga
     1321 gctgatgttt gctttgccat cggtaaagct ggttatggac gatttgaagt caaagggcat
     1381 agaactggca cacccttcct gggaaattga ttacagtgct tcattcaggt atggttattt
     1441 tctggtctcc tctttacagc catatgcaga agagaaaata ttccctcgtt ttgcaaaagt
     1501 gtttgaacag gcttacaccc gcttcctcga tctgcaaaaa gccgaagc
//
LOCUS       DATIQF010000053         2680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_153005,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000053 DATIQF010000000
VERSION     DATIQF010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153005"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..204
                     /locus_tag="VLL95_00820"
     CDS             <1..204
                     /locus_tag="VLL95_00820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37425.1"
                     /translation="RILFLRAISGRPKLLLLEEPWEGLDPDSRQNIINFLRNEMKDST
                     IIVTSNDPVFMQEADMVYKIGNA"
     gene            215..1567
                     /locus_tag="VLL95_00825"
     CDS             215..1567
                     /locus_tag="VLL95_00825"
                     /inference="COORDINATES: protein motif:HMM:NF024829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HSR37426.1"
                     /translation="MQIEHISGRIGEKLPVEAKALGQVYEINRKRYVARWIYILLGVL
                     TVFLFLPWTQNIRSTGYVTTIDQEDRPQSVVSQIPGKILRWYVREGDYVKTGDTLLQL
                     GEVKDEYLDPQLVERTQTQIDENTKKSNFYTEKIGTIDQQITTLQQQLDLKLKSLSNK
                     RKQIERKIEAKKVEIEAAKVDLKQGSDQLERAKVMLEKEAISRFDYERRNAAYIKAMS
                     ALTDKQNELDNFRQDIILNTLEENNTRQEYAEKIAKLQGEQFSISSSVAEAKEKIASL
                     SNKKQSIVRRADYYYLLSPQDGQVIKARKAGLNEIVKEGEAIAEIVPQNIRYAVELFI
                     NPMDLPLVDTGQKVRFIFDGFPAIVFSGWPRASTGTFGGKILAVESNRSINGKFRVLV
                     SEDKDQRPWPKGLKLGNGAVAFALLNDVPVWYELWRNVNGFPADFYKQEEDKRASQKK
                     "
     gene            1621..>2680
                     /locus_tag="VLL95_00830"
     CDS             1621..>2680
                     /locus_tag="VLL95_00830"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSR37427.1"
                     /translation="MCAAWLLLGAVYGQPASGQPKNDSLLVLSPDEYLNVVRKNHPVA
                     KQALLLINGAEAQLLSARGFFDPSLYFSSQQKTFDAKNYFNYNSAELKVPTWFGIEVM
                     AGLENNAGQFYNEELTLGQSSYAGFSIPLAKNLLMDRRRAALAQAKVMLNQSRAEQQL
                     MLNDLLFNAIASYWNWVLEYQVYRILTSAVAINEKRYELIRLTVEQGDRPGVDSTEAL
                     TQLLTFKAQQNEAMIRFLAAGFDLSNYMWSDNGSPYVLPQGIVPSVNMDSINPYTMPY
                     QPLPDLLDVAGTMHPKLQAFGYKIEGLQIEQKLKFQSLLPTVDLKYNLLADGYKFIPG
                     LDKVSIQNNYKFGFDVGMR"
BASE COUNT          791 a          572 c          689 g          628 t
ORIGIN      
        1 cgcatcttat tcctgagggc aatttcaggc aggccaaaat tgctgctgct ggaagaaccc
       61 tgggaaggtc ttgatccgga tagccggcag aacataataa actttctgcg taatgaaatg
      121 aaagattcca ccatcattgt tacttcaaac gaccctgtgt ttatgcagga ggctgatatg
      181 gtatataaaa taggaaacgc ttaaacctta tcgcatgcaa attgaacaca tttcaggaag
      241 aattggcgag aagttgcctg tagaggcaaa ggcattgggg caggtttatg aaatcaatcg
      301 caaacgatac gtggcccgct ggatctatat attgctgggt gttttgactg tattcctgtt
      361 ccttccatgg acacagaaca tccgttcaac cggttatgta accaccatag accaggaaga
      421 caggccacaa agtgtggtaa gccaaatacc aggcaaaata ttgcgttggt atgtgcggga
      481 gggagattat gtaaaaaccg gtgatacact gctccaattg ggcgaagtaa aagacgaata
      541 cctcgatccc caattggttg aacgaaccca gacgcaaatt gatgaaaaca ccaagaagtc
      601 gaatttttac acggagaaga ttggaaccat cgatcagcaa attaccacgc tccaacagca
      661 attggatttg aaactgaaat cgctgtccaa caagcgaaaa cagatagaaa gaaaaattga
      721 agccaagaag gtggaaatag aagcggcaaa ggtggatttg aaacaaggat cggaccagtt
      781 ggaacgggcc aaagtaatgc tggaaaagga ggccattagc cggttcgact acgaacgacg
      841 caatgcggcc tatatcaagg ccatgtccgc ccttactgac aagcaaaatg aactcgacaa
      901 tttcaggcag gacattatcc tgaacactct tgaagaaaat aatacccgcc aggagtatgc
      961 tgaaaaaatt gccaagttgc aaggcgagca attctccatt tcatcaagcg tagcggaggc
     1021 gaaggagaaa attgcatcgc tgagcaataa aaaacaaagc attgttagaa gggctgacta
     1081 ttactattta ttgtcgcccc aggatgggca ggtgataaaa gcacgaaaag ctggcctgaa
     1141 cgaaattgtg aaggaaggag aggcgattgc agagatagtt ccacaaaata tccggtatgc
     1201 agtagagctg tttattaacc ctatggattt gcccctggta gatacaggcc agaaggtgcg
     1261 tttcattttt gatggctttc ctgccatcgt gttcagtggc tggccccgtg cctcaaccgg
     1321 cacatttggt ggcaagatcc tggctgtgga aagcaaccgg agtatcaatg ggaagttcag
     1381 ggttttggta tccgaagaca aggaccaacg tccatggccc aaggggttga aactgggcaa
     1441 tggcgccgtt gcatttgcat tgctcaacga tgtgcctgtc tggtacgaac tttggcgaaa
     1501 tgtcaatgga ttccctgccg atttttataa acaggaagaa gacaaaagag catcgcagaa
     1561 aaaatgatgg gcaaaagcat ggctacaatt tgttttaggg gttggcttag gttcctattt
     1621 atgtgcgccg cctggctctt gctgggtgcg gtttatgggc agcctgcaag cggccagcca
     1681 aagaacgact cgctattggt gctgtcgcct gatgaatacc tgaatgtggt gagaaagaac
     1741 cacccggtgg ccaaacaagc tttgttgctg ataaacgggg cagaagccca gttgttgagt
     1801 gcccggggct ttttcgatcc ttcgttgtac ttctccagcc agcaaaaaac cttcgatgcc
     1861 aaaaactatt tcaactataa cagtgctgaa cttaaagtac ctacctggtt tggtattgag
     1921 gtaatggcag gcttggaaaa caatgccggc cagttttaca acgaagaatt aacgctggga
     1981 caaagcagct atgcgggatt cagcattccc cttgccaaga acctgttgat ggaccgcaga
     2041 agagcggcat tggcacaggc caaagtaatg ctgaaccaaa gcagggcaga acagcaattg
     2101 atgctgaatg acctgctttt taatgccatt gcaagctatt ggaactgggt gctcgaatac
     2161 caggtctatc ggatcctgac ttcggcggtg gctattaatg aaaaacggta tgagttaata
     2221 aggcttaccg tggagcaggg cgacaggcct ggtgtggaca gcacggaagc ccttacccaa
     2281 ctgctcacgt tcaaggcaca gcagaacgaa gccatgattc ggttcctggc ggcagggttc
     2341 gatctcagta attacatgtg gagtgataat ggctctcctt acgttctgcc gcagggcata
     2401 gtcccctccg tgaatatgga ttcgatcaat ccttatacaa tgccctacca gccattgccc
     2461 gatttgcttg atgtggctgg caccatgcat cccaagctac aggcttttgg atacaagatc
     2521 gaaggattgc agatagagca aaagttgaaa tttcagagcc tgctgccaac ggtggattta
     2581 aaatacaatc tgctggcaga tgggtacaaa ttcattcccg ggcttgataa ggtgtcgatc
     2641 caaaacaatt acaagtttgg gttcgatgtt ggcatgagat
//
LOCUS       DATIQF010000054         1565 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_244258,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000054 DATIQF010000000
VERSION     DATIQF010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244258"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..324)
                     /locus_tag="VLL95_00835"
     CDS             complement(<1..324)
                     /locus_tag="VLL95_00835"
                     /inference="COORDINATES: protein motif:HMM:NF012664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37428.1"
                     /translation="MKRRTLMMAVALLPLMVWSQPTSNEPEKDKAVSVTAGTESVVKH
                     SIGYKGGKLSYTTTAGYLGIRNDTGKVIAKVFYTYYQKDNEKVENRPIIFCFNGGPGS
                     SSVWLH"
     gene            complement(321..776)
                     /locus_tag="VLL95_00840"
     CDS             complement(321..776)
                     /locus_tag="VLL95_00840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37429.1"
                     /translation="MNMKQIFLLLLVVACSATASWSQTPGKLDSLIHQTGYEFTKAAD
                     KLWVTKVEGKNAKEIALIVAESEGMTILFSVVAEKSTLLTPVQMKQILKLCMALDKVK
                     IGLDEDDNLMVRIDLNTRLLDKEELTQSLDQLGGAADEVFTIVPKKSQP"
     gene            complement(900..>1565)
                     /locus_tag="VLL95_00845"
     CDS             complement(900..>1565)
                     /locus_tag="VLL95_00845"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HSR37430.1"
                     /translation="PAHDRQVAYQHSANDPQYMERLWAGTTSVEAADKDGWVVSITPS
                     GGWVPACIAGRTGVGMSQRLQSFVLDSALNPFNVVAPGKRPRVTLTPSLALKDGKPFL
                     SFAVQGGDTQDQNLLQFFLNVVEFGMNVQQASEAANVNTNQLWLSLGGTRVKDRAPRN
                     GDLLLQNRTPEAVRKELQAKGYKLSYTERSSGPINAIFFDWKHNSFWGGSSNHGEDYG
                     ISW"
BASE COUNT          307 a          401 c          409 g          448 t
ORIGIN      
        1 gtgcaaccac accgaggatg aaccgggacc accattgaaa caaaaaatga tgggcctgtt
       61 ttccaccttt tcgttgtctt tctggtaata ggtatagaaa actttggcga tcactttgcc
      121 agtgtcgttc cggatgccga ggtagcctgc cgtggtggtg tagctgagtt tgccgccttt
      181 gtagccaatg ctgtgtttta ctaccgattc tgtaccggca gtaacagaaa cggctttgtc
      241 tttttccggc tcgttgctgg tgggttgact ccaaaccatc agcggcagta aggctactgc
      301 catcatcaat gttcttcttt tcatggttga gatttctttg ggactattgt gaaaacttca
      361 tctgccgcgc cacccaattg atcgagtgac tgtgtcagtt cttctttgtc gagtaagcgg
      421 gtattcagat ctatgcgcac catcaggttg tcatcttcat ccagtccaat tttcaccttg
      481 tcgagagcca tgcacagctt tagtatttgc ttcatctgca ccggtgtgag cagggtcgat
      541 ttttctgcca ctacggaaaa caaaatggtc atgccttcgc tctccgctac gatcaaggcg
      601 atttctttgg cgttcttgcc ttccactttg gtgacccata gtttgtcggc cgctttcgtg
      661 aattcgtaac cggtttgatg gatcagggaa tcaagtttgc cgggtgtttg agaccatgat
      721 gctgtggctg agcaggcaac caccaacagg agcaggaaaa tttgtttcat gttcatttct
      781 ttaggttgag caatgaaagc agtagtccgc attctggtta tactgccatt gagctcccgg
      841 gatgcaggcg ctttgctttt tacataaaac aacgatgcct gatctatgcg attgcttttt
      901 taccagctga tgccatagtc ttcgccatgg ttgctgctgc cgccccagaa actgttgtgt
      961 ttccaatcga aaaagatggc gttgatgggg ccgctgctgc gttctgtata gctgagcttg
     1021 tatcctttgg cctgcaattc ttttctcacc gcttccggcg ttctgttttg caggagcagg
     1081 tcgccattgc ggggagccct gtcttttacc cttgtgccgc cgaggctcag ccaaagctgg
     1141 ttggtgttta cgttggctgc ttctgaggcc tgctgcacgt tcatgccaaa ctccaccacg
     1201 ttcaaaaaga actgcagcag gttttggtcc tgcgtgtcgc caccctgtac cgcaaagctg
     1261 aggaagggtt tgccgtcttt caatgcgagt gatggggtga gtgttacccg tggtcttttg
     1321 ccgggagcca ccacattgaa aggattcaag gcgctgtcca gcacaaagct ctgcaggcgc
     1381 tggctcatgc ccacgccggt acggccggca atgcaggctg gtacccatcc accactgggc
     1441 gtgatgctca ccacccaacc gtctttgtcg gcggcttcta ccgaagtggt gccagcccag
     1501 aggcgctcca tgtattgcgg atcattggcc gaatgctggt aagccacctg cctgtcgtgg
     1561 gcagg
//
LOCUS       DATIQF010000055         1844 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_92207, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000055 DATIQF010000000
VERSION     DATIQF010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92207"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1735
                     /locus_tag="VLL95_00850"
     CDS             <1..1735
                     /locus_tag="VLL95_00850"
                     /inference="COORDINATES: protein motif:HMM:NF012433.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
                     /protein_id="HSR37431.1"
                     /translation="PWSNKQLDIQFETFRNKLLHRQQETWKVKVKGAKGEKIAAEMLA
                     SMYDASLDQIYPHNWMNLFPWNNYQFGNSWRAQSNFRNEQSALHAGNPEYRNYSKIYD
                     ALVTIENDIAYGPKVRNMAFEARAAAAPGMDMQLNETVIVSKKQDEDYDKVFTRSPDQ
                     EVHIRGKSSVGVDTKEPTAPAPDQIQIRKNFNETAFFFPALQTDAEGNISFSFTMPEA
                     LTQWKLQLLAHTQALQVGQTSATAITQKDLMVQPNAPRFLRQGDKMELAAKVVNLSDK
                     ELTGTATLELLNASTMQPVDGWLQNVFPMQYFTAAAGQSAVVKFPVEIPVQYTDALVY
                     RITAKAGNLSDGEEMALPVLSNRMLVTESFPINMRSTNSKNFNWQKLLQSENSPTLQH
                     QSFTIEYTSNPVWLAIQSLPYLAEYPYECAEQTWNRFYANALAAHIAQSFPKVKAVLA
                     KWKDTDTTALLSNLQKNEQLKQALLEETPWVLAAKNENEQRKNLSMLFDVLRLEKESE
                     KSLATLEQLQSPNGGFVWFKGGPDDRYMTQYIISGMGHLRQLKAWPTAFAARLQVMAN
                     KGIAYLDVRMK"
BASE COUNT          565 a          478 c          426 g          375 t
ORIGIN      
        1 gccttggagc aataaacaac tcgatatcca attcgaaact ttccgcaaca aactgttgca
       61 cagacagcag gaaacatgga aggtaaaagt gaagggtgcc aaaggtgaaa agatagccgc
      121 cgaaatgctg gcatcgatgt acgatgcttc attggatcaa atttacccgc acaactggat
      181 gaacctgttc ccctggaaca attatcagtt tggcaatagc tggcgggcac aatcaaattt
      241 caggaatgaa caaagcgctt tacacgctgg gaatccagaa tacaggaact actcaaaaat
      301 ctatgacgct ttggtcacca ttgaaaatga tattgcgtat gggccaaaag tgcgcaatat
      361 ggcctttgaa gcccgtgcag cagctgcccc gggaatggac atgcagctta acgaaacggt
      421 gattgtttct aaaaagcaag atgaagacta tgataaagtg tttacaagga gcccggatca
      481 ggaagtgcac attcgcggca agtccagtgt tggcgttgac acgaaagaac caaccgcacc
      541 ggcccctgac caaatccaaa tcaggaagaa cttcaacgaa accgctttct tcttccccgc
      601 cctgcaaacc gatgccgaag gcaatatcag tttcagcttt accatgccgg aagcattgac
      661 acaatggaaa ctgcaactgc tggcgcatac gcaggcattg caggtaggcc aaacttccgc
      721 cacagccatc acgcaaaaag acctgatggt gcagcccaat gcgccacgct ttttacggca
      781 gggcgataaa atggaactgg cagccaaagt ggtaaacctg tctgacaaag aactgacagg
      841 caccgccaca ctggaattgc tgaatgccag caccatgcaa cccgtagatg gatggctgca
      901 gaatgtattc ccgatgcaat acttcaccgc agctgccggg caaagtgccg tggtaaaatt
      961 ccctgttgaa atacccgttc agtacactga cgcattggtg taccgcatca ccgccaaagc
     1021 tggcaacctc agcgatggcg aagaaatggc cctccccgta ttgagcaacc gcatgctggt
     1081 gacagaatca tttcccatca acatgcggag caccaacagc aaaaatttca actggcaaaa
     1141 attgctgcaa agcgaaaaca gtcccacgct gcagcaccag tcatttacca tcgaatacac
     1201 ttccaacccg gtatggctgg ccatacaatc actgccctac ctggcggaat atccttacga
     1261 gtgtgcagaa caaacctgga accgctttta tgccaatgca ctggcagcgc atatagcgca
     1321 aagctttccc aaagtaaaag ccgtactggc caaatggaaa gacactgata ccactgccct
     1381 gctttccaac ctgcaaaaaa atgaacaact gaagcaggcg ctgttggaag aaacaccatg
     1441 ggtactggcc gccaaaaatg aaaatgaaca gcgcaagaat ctttccatgc tgttcgatgt
     1501 gttgcgattg gagaaagaga gtgaaaaatc gctggcaacg ctggaacaat tgcaatcgcc
     1561 caacggtggt tttgtgtggt tcaaaggcgg gccggatgat cgctacatga cacagtacat
     1621 catcagtggc atgggacatt tgcgccagtt gaaagcatgg ccaactgcct tcgccgctcg
     1681 cctgcaagtc atggccaaca aaggcatcgc ctacctcgat gtccgtatga aataagatta
     1741 tgattggatc caaaagaaca agaccaccaa aagcgcttac agcatttcca ccttcaacac
     1801 ccagtacctg tacatgcgca gcttttttat tgacgtagtc atga
//
LOCUS       DATIQF010000056         3325 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_168208,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000056 DATIQF010000000
VERSION     DATIQF010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3325)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3325)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3325
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168208"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..884)
                     /locus_tag="VLL95_00855"
     CDS             complement(<1..884)
                     /locus_tag="VLL95_00855"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HSR37432.1"
                     /translation="MNNPLRFGLIGCGRIAQRHASIMQQHGVLAAVCDIDKSKADALA
                     AQYGAEAFYDAAEMLQFWQGELDVVAVCSPNGLHAFHSISAMRHGAHVLCEKPMAIKA
                     ADAEAMVEAARSTGRHLVVVKQNRYNPPVLAVKQMLEAQQLGRILSVQCNCFWNRPAA
                     YYQDTWKGTLDLDGGALYTQFSHFIDILVWMFGSFEPIAAVATNALHQGVIDTDDSGM
                     VMGRFASGALLNLNYTVNAFDHNMEGSITIFGELGTVKIGGQYLNELEYQSLSQGALA
                     NLPPGNSPNQYGQYTGSM"
     gene            complement(902..1759)
                     /gene="rfbA"
                     /locus_tag="VLL95_00860"
     CDS             complement(902..1759)
                     /gene="rfbA"
                     /locus_tag="VLL95_00860"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: protein motif:HMM:TIGR01207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008879 - glucose-1-phosphate
                     thymidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HSR37433.1"
                     /translation="MKGIILAGGSGTRLYPITKGISKQLMPIYDKPMIYYPLSVLMLA
                     GIREVLIITTPEDQSQFKRLLGDGSQVGCRFEYAVQEVPNGLAQAFVIGESFIGNDKV
                     CLVLGDNIFYGSGFSKLVQAFNDVDGAAVFAYEVSDPERYGVVEFDDSFNAISIEEKP
                     THPKSHYAVPGLYFYDNEVVQIAKSIEPSARGEYEITTVNNTYLQKGKLKVGVMDRGT
                     AWLDTGTFDSLHDATEFVRVIEKRQGLKIGCIEEVAWRMGFISTEHLHQLAAQLEKSG
                     YVQYLKQLK"
     gene            complement(1802..2353)
                     /gene="rfbC"
                     /locus_tag="VLL95_00865"
     CDS             complement(1802..2353)
                     /gene="rfbC"
                     /locus_tag="VLL95_00865"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR01221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HSR37434.1"
                     /translation="MEIIETPLKDCFIIRNNVIGDNRGYFFESFNHRRFSSLTGWEGQ
                     FVQDNQSCSKFGVVRGLHFQRGESAQAKLVRVLQGKVLDVAVDLRPHSPSFGKWFAVE
                     LSDDNATQFFVPRGFAHGFSVLSESATFFYKCDNYYHKEAEGGIHPYDGFLDIDWKIA
                     ATDALLSDKDKAAGSWQDFLDNL"
     gene            complement(2366..>3325)
                     /gene="rfbB"
                     /locus_tag="VLL95_00870"
     CDS             complement(2366..>3325)
                     /gene="rfbB"
                     /locus_tag="VLL95_00870"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: protein motif:HMM:TIGR01181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HSR37435.1"
                     /translation="NLDALTYAGNLENLKDIEHLPNYAFSHTNLLDAAALQEVFQRFE
                     VTDVIHLAAESHVDRSILSPLDFVYTNVMGTVNLLEAAKRHWNGQYEGKRFYHISTDE
                     VYGALGDSGFFTETTRYDPHSPYSASKASSDHFVRAYGDTYGMPTVVSNCSNNYGPYH
                     FPEKLIPLFINNIIHHKPLPVYGDGLYTRDWLFVKDHATAIDLVFHQGKLHDTYNIGG
                     FNEWKNIDLVKLLCKLMDEKLGRPAGTSENLITYVKDRPGHDRRYAIDASKINRELGW
                     KPYVTFEESLAETIDWYLANTEWLQHVTSGDYLNYYEKQYKNR"
BASE COUNT          771 a          886 c          828 g          840 t
ORIGIN      
        1 ctcatgctcc cggtgtattg cccgtattgg ttgggcgaat tgcccggagg caaattggcc
       61 agcgctcctt ggctgaggct ctggtattcc agctcgttca ggtattggcc gccaatcttc
      121 acggtgccca attcgccaaa aatggtgatg gacccctcca tattgtgatc aaatgcatta
      181 acggtatagt tcaggttgag caaagccccg gatgcaaaac gccccattac catgcccgaa
      241 tcatcggtgt cgatcacacc ctggtgcagg gcattggtgg ccacagccgc aatgggttca
      301 aaactcccga acatccatac caggatatca atgaagtggc tgaattgggt atacaaagcg
      361 ccgccatcca aatcaagtgt gcctttccag gtatcctggt aataagcagc cgggcgattc
      421 cagaaacaat tgcattgcac actcaaaatg cggcccaatt gctgagcctc cagcatttgc
      481 tttactgcca gcaccggggg attgtagcgg ttttgcttca ccaccaccag gtgccggccg
      541 gtgctgcggg cagcctccac catggcctcc gcatcggcag ccttaatggc cattggtttt
      601 tcgcacaaca catgggcgcc gtggcgcatg gccgaaatgc tgtggaaagc atgcaggccg
      661 ttaggggaac atacagccac cacatccagt tcgccttgcc agaattgcag catttccgcc
      721 gcatcataaa aagcttcggc gccgtattgc gcagccagtg catccgcttt gcttttatca
      781 atatcacaca cagcggccag cacaccatgc tgctgcatta tggaggcatg acgctgtgcg
      841 atgcgtccac aaccgatgag tccaaaacgc aggggattgt tcatggcagg tgtgtcggca
      901 gttatttgag ttgtttcagg tattggacgt acccgctttt ctccaactgg gcagccagtt
      961 ggtgcaaatg ttcggtactg atgaagccca tgcgccaggc cacttcttca atgcagccaa
     1021 ttttcaatcc ctgtcgcttt tcaatcactc tcacaaattc tgtagcatcg tgaaggctgt
     1081 cgaaagtgcc ggtatccagc caggcggtgc cgcggtccat cacccctact ttgagcttgc
     1141 ctttttgcag gtaggtattg ttgaccgtgg tgatctcata ttcgccacgg gcactgggtt
     1201 caatcgactt ggcgatctgc accacttcgt tgtcgtaaaa atagaggccg ggcacggcgt
     1261 aatggctttt gggatgtgtg ggtttttctt caatgctgat ggcattgaaa ctgtcatcaa
     1321 actctaccac accatagcgc tccggatcgc ttacttcgta agcaaaaacg gctgccccat
     1381 ccacatcgtt gaaagcctgc accagtttgc tgaagccgct tccgtaaaaa atattgtcgc
     1441 ccaaaaccag gcatactttg tcgttgccaa taaaagattc tccaatgaca aacgcctgtg
     1501 ccaacccatt gggcacttcc tgtaccgcat attcaaaacg gcaacctacc tggctgccat
     1561 cacccaacaa tcgcttgaac tggctctgat cttcgggggt ggtaatgatg agtacctccc
     1621 ggatacccgc cagcatcagc acactcagcg ggtagtagat cattggctta tcgtaaatgg
     1681 gcatcagttg cttgctgatc cctttggtaa tggggtaaag acgggtaccg cttccaccag
     1741 ccagtatgat acctttcatg aaatcgaagt tttaaggttg ctaagaaacg ccaatcgggt
     1801 actacaagtt atccaaaaaa tcctgccacg atccggcggc cttgtctttg tcggaaagca
     1861 aagcatcagt tgctgcaatc ttccaatcaa tatccaggaa tccgtcgtac gggtgaatgc
     1921 cgccttcggc ttctttgtgg taatagttgt cgcatttgta gaagaaggta gccgattcgc
     1981 tcagcaccga aaagccatgc gcaaagccac ggggcacaaa aaactgtgtt gcgttgtcat
     2041 cgctcaattc cacggcaaac catttgccaa acgaaggact gtgtggcctg agatccaccg
     2101 ccacatccag cactttgccc tgcagtaccc gcaccagttt ggcttgcgcc gattcgcccc
     2161 gctgaaaatg caggcccctg acgacaccaa attttgagca cgactggttg tcctgcacaa
     2221 actgcccttc ccaacctgta agggaggaaa accggcgatg gttgaagctt tcgaaaaagt
     2281 agccgcggtt atcaccaatc acattgttcc tgatgatgaa gcaatctttc agcggcgttt
     2341 caatgatttc catgcgggca aaatactacc tgttcttgta ttgtttctcg taataattca
     2401 aatagtcgcc gctggttaca tgctgcagcc actcggtatt ggccaggtac cagtcgatgg
     2461 tttcggccag gctttcttca aaggtcacat agggtttcca gcccagttcc cggttgattt
     2521 tggaagcatc aatggcatag cgcctgtcat ggcccggcct gtcttttaca taagtgatca
     2581 ggttttcgct ggtgccggcc ggccttccca atttctcatc catcagttta cacagcagct
     2641 tcacgaggtc aatatttttc cattcgttga agccaccaat attgtaagtg tcgtgcagtt
     2701 tgccctggtg aaatacgagg tcaatggctg tggcgtggtc ttttacaaac agccagtcgc
     2761 gggtatacaa accatcgcca tacaccggca gcggtttgtg gtgaatgata ttattaatga
     2821 aaagagggat cagcttttca gggaaatgat agggtccgta gttgttgctg caattgctca
     2881 ccacggtagg cattccgtag gtgtcgccat aggcccgcac aaaatgatcg ctgctggcct
     2941 tgctggcgct gtaagggcta tgcggatcgt agcgggtggt ttctgtaaag aagccgctgt
     3001 cacccaaagc gccatacact tcgtcggtgc tgatgtgata aaatcgcttg ccttcgtatt
     3061 gcccgttcca atgtcgcttg gcagcttcca gcaggttcac cgtgcccatc acattggtgt
     3121 acacaaaatc gagcgggctc aggatgctcc tgtccacatg gctttctgcg gccaggtgga
     3181 tcacatctgt cacttcaaaa cgctggaata cttcctgcaa ggctgcggca tcgagtaagt
     3241 tggtatgcga gaatgcgtag ttgggtaagt gctcgatgtc cttcagattt tcgaggttgc
     3301 cggcataggt aagcgcatca aggtt
//
LOCUS       DATIQF010000057         2100 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_16229, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000057 DATIQF010000000
VERSION     DATIQF010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2100
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16229"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1431
                     /locus_tag="VLL95_00875"
     CDS             <1..1431
                     /locus_tag="VLL95_00875"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HSR37436.1"
                     /translation="RFGVKPLYYTYTSGYMAFGSEVKQLRTLPAYQFKLNEKIAYQYL
                     CYSHIDHDSETFEEGVMQVRPGHFLKVDLKDNAINETEWYKFQPRTWSGTEQEATEAF
                     AAVLKDAVKLRMRSDVPVGSALSGGLDSSTIVCLMRQVLDDECHQQKQLETVTSSSLD
                     KRYDETHYAELVNQQTNSHSHKTYPSFEKLQDDFDRLLWHMDYPFGSTSQFSQWCVFE
                     AAGKAGLTVMIDGQGADEQLAGYGGNDLALYSGLIRKGHWTDLWQEAQGYKKRHGFLP
                     KGFLMGGLIAQLPAAAARAVPGRWNPWRQDHADWLLPRNIDATAMPQDSLQRYLMGQV
                     YVAPLPSLLRYEDRNSMAFSVESRTPFMDYRVLEFTLGLPERLVYRNNERKYILRQAF
                     KGRVPQAVLDRQDKMGFVSAEERWMKEDGKEWFTRQMTDSCKLLHDFVDPNQAMVYFH
                     KMQQGNVPFTFDPWRVICLGQWLKSF"
     gene            1428..>2100
                     /locus_tag="VLL95_00880"
     CDS             1428..>2100
                     /locus_tag="VLL95_00880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37437.1"
                     /translation="MKTLISKIWAKFDLLVLRPIEWKFWKQDEFGAVQMDKSNVEHLT
                     HLLGYTFKNEQDQAFFEHRFSGYEVHLKDVLLDGTNGWVVSGRNIHPLSFFNINDPYD
                     GKKRYPPMLPMAYAKLIGPPTETGEVVWLPKLWNNYYHFVVELLPVLLALKRIGKPVT
                     IMGCSVTAYPYVQYFVESMQLQPQIRFTPIEKGKCYKAKSVLLKKQPLFEKEYQQAIQ
                     QLIASI"
BASE COUNT          569 a          439 c          554 g          538 t
ORIGIN      
        1 cgttttggtg taaagccgct ctattacaca tatacttccg gctacatggc ctttggatca
       61 gaggtgaagc agttgcgcac tttgccagcc taccaattca aattgaacga gaaaatagct
      121 taccagtatc tctgctacag ccacattgat cacgatagtg aaacttttga ggaaggcgtg
      181 atgcaagttc gtcccggcca cttcctgaag gtggatttga aggataacgc tattaatgag
      241 acggagtggt acaaatttca gccgcgtacc tggagtggaa cagaacagga ggcaacagaa
      301 gcgtttgcgg ccgtgctgaa ggatgcagtg aaacttcgga tgcgaagtga tgtgccggtg
      361 ggtagtgcat tgtccggtgg tcttgacagc agtaccattg tctgcctgat gcggcaagta
      421 cttgatgacg aatgccatca gcaaaagcaa ttggaaacgg ttacctccag tagcctagac
      481 aagcgctacg atgaaacaca ttatgccgag ttagttaacc agcaaaccaa cagccactct
      541 cacaaaacat atccttcttt cgaaaaactg caggatgatt ttgatcgttt gctatggcac
      601 atggactatc cgtttggaag caccagccag tttagccaat ggtgtgtgtt tgaagctgcc
      661 ggcaaagcgg gattgacagt gatgatagat ggccagggag cggatgagca gctggcagga
      721 tatggcggca atgatctggc cttatacagt gggttgatta gaaaggggca ttggactgat
      781 ttgtggcagg aagcccaggg gtataaaaag cgccatggat ttctgccgaa agggtttttg
      841 atgggtggcc tgattgcaca attgcctgcg gctgcggcca gggcagtacc aggccgttgg
      901 aacccctggc ggcaagatca tgcagactgg ctgcttccca ggaatattga cgccactgcc
      961 atgccgcagg attcattgca gcggtacctg atgggccagg tgtatgtggc accattgcca
     1021 tccttgttgc ggtatgaaga ccgtaattcc atggctttct ccgtagaaag ccgcacccct
     1081 ttcatggatt atcgcgttct ggagtttacc cttgggttgc cagagcgttt ggtgtatcga
     1141 aacaatgaac gcaagtatat tttgcgacag gcttttaaag gaagggttcc tcaagcggtg
     1201 ctcgataggc aggacaaaat gggattcgtt tcggctgaag aacgatggat gaaagaggat
     1261 ggcaaagaat ggtttacccg tcaaatgaca gatagctgca aattgctgca tgattttgtc
     1321 gatccgaatc aggccatggt ctatttccat aagatgcaac aaggcaatgt gccattcact
     1381 ttcgatccct ggcgtgttat atgccttgga caatggttga aatcgttttg aaaacgctga
     1441 tcagtaaaat atgggcaaag tttgatctgt tggtgctgcg accaatagag tggaaattct
     1501 ggaaacagga cgagttcggt gcggtacaaa tggacaaaag caatgttgag cacctgaccc
     1561 acttgcttgg atacactttt aaaaatgagc aggaccaggc ttttttcgaa caccggtttt
     1621 caggatatga agttcattta aaagatgttt tgcttgatgg aaccaatggt tgggtggttt
     1681 caggaagaaa catccatccc ctttcttttt tcaatatcaa tgatccctac gatggcaaaa
     1741 agcgatatcc gccaatgctg ccaatggcat atgccaaatt gatagggccg ccaactgaaa
     1801 caggcgaagt ggtgtggctg cctaaactct ggaataacta ttatcatttt gtggttgagt
     1861 tgttgccggt tttgctcgca ctcaagcgaa ttggaaaacc ggtgactata atgggatgct
     1921 cagttacggc ttatccgtat gtccagtatt ttgttgaaag catgcaactg cagccacaaa
     1981 ttcgtttcac tccaatcgaa aaaggcaaat gctataaggc gaagtcggtg ctattgaaga
     2041 aacaacccct tttcgaaaag gaataccagc aggctattca gcagttgata gcatcaattg
//
LOCUS       DATIQF010000058         1819 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_274706,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000058 DATIQF010000000
VERSION     DATIQF010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1819
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274706"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..262)
                     /locus_tag="VLL95_00885"
     CDS             complement(<1..262)
                     /locus_tag="VLL95_00885"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HSR37438.1"
                     /translation="MNIEIIAGSPRKDSVTYRLALFLKSHLQQHSEHNVDILDVREWN
                     LPLLENVFSSVDATPDAYKPLARRMFGADAFILVSPEYNGTYT"
     gene            complement(259..618)
                     /locus_tag="VLL95_00890"
     CDS             complement(259..618)
                     /locus_tag="VLL95_00890"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HSR37439.1"
                     /translation="MSNGRGHENVADEPAEFNGSDTGFAPDEWLASALASCSIITMRM
                     YADRKGWPLERIEMQVQFERLEKTSKFVKHIRFIGGLDEEQQHRLLVIGEKCPVHKTL
                     SNPIEISSVIIKSEDSL"
     gene            complement(901..1455)
                     /locus_tag="VLL95_00895"
     CDS             complement(901..1455)
                     /locus_tag="VLL95_00895"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HSR37440.1"
                     /translation="MATYKIDAMHSEIKFRVKHLMISNVTGEFKTFDATIVAQNEDFS
                     DAKISFEADVNSISTNQEQRDAHLKSDDFFNAEQFPKMTFQSTNVTKTGEGELLVKGN
                     LTIRDVTKEVELKAEVGGTMVDFYGQTKVGFDITGTIKRKAFNLKWDGVTEAGGVVVS
                     DDVKLVLAVQFAKVAVEAAAAISA"
     gene            complement(1518..>1819)
                     /locus_tag="VLL95_00900"
     CDS             complement(1518..>1819)
                     /locus_tag="VLL95_00900"
                     /inference="COORDINATES: protein motif:HMM:NF017536.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pirin-like C-terminal cupin domain-containing
                     protein"
                     /protein_id="HSR37441.1"
                     /translation="AGADWQFSLPDGDTLGIVVLQGNIMINDEKQARTGDMVVFSQHN
                     TDVKIDSNNEAHLLVLSGEPIREPIAAYGPFVMNTKEEILEAVEEFNSGKFGQLN"
BASE COUNT          410 a          430 c          441 g          538 t
ORIGIN      
        1 gagtgtaggt gccattgtat tcggggctta ccaggatgaa ggcgtcggcg ccaaacatcc
       61 gcctagccag cggcttgtac gcatcggggg tggcgtccac cgaggagaat acgttctcca
      121 gtaagggcag gttccattcc ctgacatcca aaatgtccac gttgtgttcg ctgtgttgct
      181 gcaggtggct tttcaaaaac aaggccaacc ggtaggtcac actgtctttg cgggggctgc
      241 ctgctattat ttctatgttc ataatgaatc ctcgcttttt ataataaccg atgaaatttc
      301 aattgggttc gaaagcgtct tgtgaaccgg gcatttttca cctatgacta acaaacgatg
      361 ttgctgctct tcgtctaatc caccaataaa ccggatatgt ttcacaaatt ttgaagtctt
      421 ttccagccgc tcaaattgca cctgcatctc aatccgctcc aatggccagc ctttccggtc
      481 ggcatacatg cgcatggtga tgatggaaca actggccagc gctgaagcca gccattcatc
      541 aggagcaaac ccggtatcag aaccgttgaa ttcggccggc tcatcggcca cgttttcgtg
      601 gccacggcca ttgctcaatt tcgtttttta ctggtctctg cctattgaag cctttatttc
      661 aatcatacaa caatactttt cgaacgatgt gaagggtaag aaatgaagtt gaggatgttt
      721 tgtttcccgg tatgtgggga tccgatgaag ctacagttct caggcgaaag ctgcaatgcg
      781 cttgctacct ggcattggaa caaaaactcc tgaaacaaca aagaagaaaa tttgagtgca
      841 aataggtgtg agatggagca ggcaagccat tattaggcag cctgctcctt atgaaaaaca
      901 ttatgcagaa attgcagcgg ctgcttcaac agctactttg gcaaactgaa ctgccagcac
      961 cagcttcaca tcgtcgctca ctacaacgcc accggcttcg gttacgccat cccacttcag
     1021 gttgaaggct ttgcgcttga tggtaccggt aatgtcgaag ccaactttgg tttggccata
     1081 aaagtcaacc atggtgccac ctacttcagc tttcaattct acttctttgg ttacgtcgcg
     1141 aatggtgagg ttgcccttta ccaggagttc gccttcgccg gtcttggtaa cattggtaga
     1201 ttggaaggtc atcttgggga attgttctgc attgaagaag tcatcgcttt tcaggtgagc
     1261 gtcgcgttgc tcctggttgg tgctgatgct gttcacatcg gcttcaaagc tgatcttcgc
     1321 atcgctgaaa tcttcatttt gggctacgat ggtagcgtca aaggttttga attcacctgt
     1381 tacattgctg atcatcaggt gctttacgcg aaacttgatt tcgctgtgca ttgcgtcgat
     1441 tttgtacgtt gccataggat tttaattttt ggttttttgt ttattgtttg tggttgtagt
     1501 taactgcgtt gttattctca attgagctgt ccgaatttgc cgctgttgaa ttcttcaaca
     1561 gcttccagga tctcttcctt cgtattcatc acgaagggac cgtaagcggc aatgggttcg
     1621 cggatgggtt cgccactcag taccagcagg tgtgcttcat tgttgctgtc aatttttaca
     1681 tcggtgttgt gctggctgaa caccaccata tcgccggtgc gggcttgttt ttcatcattg
     1741 atcatgatgt tgccctgcaa gaccacaatg ccgagtgtat cgccatccgg caatgagaac
     1801 tgccaatcgg cgccggctt
//
LOCUS       DATIQF010000059         1765 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_92247, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000059 DATIQF010000000
VERSION     DATIQF010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92247"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1765)
                     /locus_tag="VLL95_00905"
     CDS             complement(<1..>1765)
                     /locus_tag="VLL95_00905"
                     /inference="COORDINATES: protein motif:HMM:NF020083.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HSR37442.1"
                     /translation="VYFLPTHSLELVESAALQTAIAKNIMESRDPLALCFDVLCQFLC
                     TLAVGDGFLPAAILPVIRSTWCFQSMNDEEWLQVLMHITEGGRALQQYDEYRKVEVED
                     GIYKIKSRRLALRHRMNIGTIVSDAMLKVKMVSGGYVGHIEEWFISRLEPGYVFTLAG
                     RNLELVQIKDMTVMVRKSNQKKSIVPSWMGGRMSLTANLGMVLRETMGDAAAMTEGKG
                     SAPLSTGEGPGVRSSDENPKPGYITASPELWPKLLKQAKEMRKQPTVAEKLLWQNLRN
                     RKLNGFKFRRQHPILSYIPDFVCLEKKLIVELDGSVHRDPDTAKVDFFRACQLAEHGY
                     RIMRFWNSEIEKNQLAVLEKISMRLSIDEAIDAIKARLRNAKPEWWQEYNGSQLEIHD
                     ASKYLSPNPSPTERGDLSASSIELTALAPLFQLQAELSHIPRNNELLIEHHESKEGYH
                     LLVYPFEGRQVHEAMSAILAYRISRLLPITFSIAMNDYGFELLSDKPIPVDDSNVHDL
                     FTTDELLTAMQHSANHVEMAMRKFRDIAVIGGLVFQGMPGEQKKARHLQASASLIFKV
                     FRDFDPNNILLRQAFQEVYEQ"
BASE COUNT          392 a          460 c          427 g          486 t
ORIGIN      
        1 tgctgctcat acacttcctg gaaggcctgc cgcagcagga tgttgttggg atcaaaatcg
       61 cggaagactt tgaaaataag cgaagccgat gcctgcaagt gtcgtgcttt cttttgctcg
      121 cctggcatac cctggaaaac aagtccgcca atcaccgcaa tgtccctgaa cttgcgcatg
      181 gccatttcaa cgtgattggc actgtgttgc atggcagtga gcagttcgtc ggtggtaaat
      241 aaatcgtgca cattgctgtc gtctaccggt atgggtttgt cgctcagcaa ttcgaagcca
      301 taatcattca tggcaatgct gaatgtgatg ggcagcaggc ggctgatgcg gtaagccagg
      361 atggcgctca tggcttcgtg tacctgccgg ccttcgaaag ggtacaccag caagtgatag
      421 ccttccttgc tttcgtgatg ttctatcagc aattcgttgt tgcggggtat gtgcgacaat
      481 tcagcctgca gttggaagag gggggcgagg gcggtaagtt ctatactgga agctgacaaa
      541 tctcccctct ccgttggaga ggggttgggg gagaggtatt tcgatgcatc atgaatttcc
      601 aattgggatc cgttgtattc ctgccaccat tctggtttag cgtttctcag tctcgctttg
      661 attgcatcta tggcttcatc tattgataat ctcatactaa tcttttctaa aacagccagt
      721 tgattttttt caatttcact attccagaat ctcataatgc ggtagccgtg ttcagccagt
      781 tggcacgccc tgaagaaatc aactttggca gtatccgggt ctctgtgaac agatccatct
      841 aactccacaa tcagtttctt ttccaggcag acaaaatccg ggatataaga taaaatggga
      901 tgttgtcttc tgaacttgaa accattcaat ttacggttgc gaagattttg ccaaagaagc
      961 ttttctgcca ccgtgggctg ctttctcatt tctttggcct gcttcaacaa cttgggccat
     1021 aactcaggac ttgcagtgat atagcctggc ttcggatttt catctgatga cctcaccccc
     1081 ggcccctctc ccgtggagag gggggcagag ccttttcctt cagtcattgc tgcagcatca
     1141 cccatcgtct cccgcagcac catacccagg ttggccgtca ggctcatgcg gccgcccatc
     1201 caactgggaa cgatggattt tttctggttg cttttgcgca ccattactgt catgtctttt
     1261 atctgcacca actcaaggtt gcgccccgcc agcgtaaata cataaccggg ttccagtcgg
     1321 ctgatgaacc attcttcgat atggccaaca tagccacctg ataccatttt cactttcagc
     1381 attgcatcgc ttacaatggt gccgatgttc atgcgatgcc gcagggccag ccgccggctc
     1441 tttatcttgt aaatgccatc ttccacttcc actttccggt attcgtcgta ctgctgcaat
     1501 gcccggcctc cttcggttat gtgcatcagc acctgcagcc attcctcatc attcatggat
     1561 tgaaaacacc aggtgctgcg aatgaccggc aggattgctg cgggcaggaa gccgtcaccc
     1621 acagccagcg tgcacaaaaa ctggcagagt acatcaaagc acaaagccag cgggtcgcgg
     1681 ctttccatga tgtttttcgc aattgctgtt tgcaaggcgg ctgattccac cagttccagc
     1741 gaatgcgtag gcaagaagta tacat
//
LOCUS       DATIQF010000060         2678 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_137969,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000060 DATIQF010000000
VERSION     DATIQF010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2678
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137969"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(216..1934)
                     /locus_tag="VLL95_00910"
     CDS             complement(216..1934)
                     /locus_tag="VLL95_00910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37443.1"
                     /translation="MSWWLVFYIVVSPLGLFAQPDSLIRLPEPMGVKTLLSIFENHRF
                     PHLADTGTRLLEQLSETYGRQGKPVLQQHAWMYATSLQSEKLQDLDPKIALLKNRSEW
                     ASKNGWPGISAQLQFYAGTSFFFRGKKGPGFEYMLRAYEKMEQMDSSQVPLRYHFSHQ
                     LASIYYDLGDFENCVRFATAYEKTDLRWLPEHERYGFRNTMGMAWLQLKKYDSANIFF
                     SMAHQSARLSGDSLWMALSHGNMGYSLFQQGRHGEALPLLQNDFKTSLQYGLKESAVN
                     AGLLVTKILLAQQDLASADQMMAVMDTLMPVVQSVETRKQYFELKFLVAQKQGRWQQA
                     VSMADSALRYHTAAKNNQNEAISARVRNKLETENYLSSIASLQAQRNTEVMLRNALLG
                     LVVVTTLLVLLFINRYRIKKQKEADAAYYARQIAEDKLQLMKSELDQYTLRMKDKAAL
                     TQKLQDEIDALKLQHHQASSEKENVLQQLLQASILTEEDWDTFKSLLEKVHPGFLVRL
                     RQTFPDLTPAETRLLVLTKLQLSNKEMTAMLGIGYDAIKKTRQRLRKKIDLPEDGGLD
                     DLIQMI"
     gene            complement(1987..>2678)
                     /locus_tag="VLL95_00915"
     CDS             complement(1987..>2678)
                     /locus_tag="VLL95_00915"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HSR37444.1"
                     /translation="ADVVKLMTIHAAKGLEFPCVFVGGMEESLFPNAMAINTREELEE
                     ERRLFYVAVTRAKSKLWLTYAQSRYKFGQITANDPSRFLDEVPTQYADRTMAGGGLRN
                     QGGSMNFGGGMSAFERLHGGRGGVSSGNSASAAERRYGPPPGKKEPTKPSYVGPSQPP
                     KVVEHKPAPDFVPSDTSELKVGDKVEHQKFGFGVVIKMEGASHNPIATVKFDQNGEKK
                     IMLNYAKLRIL"
BASE COUNT          590 a          687 c          715 g          686 t
ORIGIN      
        1 caggctgatg accagcactg ccgctatcca cagcagggtg tggaaggatg gcttttctgg
       61 tgtgttggtg gacatgactg caagatgctg tccctttgca gcagttgtgc ttttggtgtg
      121 gtgacaaaag cggggacagc ccgcaaaaac catggggaca aaaaagggga caaggctgaa
      181 agccttatct gtaatgggtt tcagggatgc aggggtcaga tcatttggat gaggtcatcg
      241 agtccgccat cctcaggcag gtcaattttt ttgcgcaggc gctgcctcgt tttcttgatg
      301 gcatcatagc caatgcccag catggccgtc atttctttgt tcgacagttg tagtttggta
      361 agtaccagca accgggtctc agccggcgtc aggtcaggaa aagtttgccg cagccgaaca
      421 aggaatcccg ggtgcacttt ctcgaggagg gatttgaacg tgtcccagtc ttcttcggta
      481 agaatgctgg cctgcaatag ctgctgcaac acgttctcct tttcggatga ggcttggtga
      541 tgttgaagct tcaatgcatc aatttcgtcc tggagttttt gggtaagggc ggccttgtcc
      601 ttcatgcgga gcgtgtattg atccaattcc gatttcatca actgcaattt gtcttcggca
      661 atctgccggg cataataagc tgcatccgcc tctttttgct ttttgatgcg atagcggttg
      721 atgaagagca gtacgagaag ggtggtcacc accaccaggc caagcagggc attgcggagc
      781 atgacctccg tatttctttg tgcctgcagg ctggcaatgc tgctgaggta gttttccgtt
      841 tccagtttgt tgcgcacccg ggcagaaatg gcctcgtttt gattattctt ggccgcggta
      901 tgatacctca atgccgaatc ggccatggag acagcctgct gccatcggcc ttgcttctga
      961 gccaccagga atttcagttc aaaatattgc tttcgcgttt caacagactg caccaccggc
     1021 atcaatgtgt ccataaccgc catcatttga tcggccgatg ccaggtcttg ttgcgccagg
     1081 agaattttcg ttaccagtaa gccggcattc acggcgctct ccttcaggcc atattgcagg
     1141 ctggtcttga agtcgttttg caataaagga agggcttctc catgccggcc ttgctgaaat
     1201 aacgaatagc ccatgttgcc atgcgagagt gccatccaaa ggctgtcgcc actcaacctg
     1261 gccgactggt gcgccattga gaagaagata tttgcgctgt cgtatttctt caactgcagc
     1321 caggccatgc ccatggtgtt ccgaaagcca tacctctcgt gttctggcaa ccaccggagg
     1381 tctgtctttt cataggcggt ggcaaagcga acgcagtttt cgaaatcacc gaggtcataa
     1441 tagatgctgg ccaactggtg ggaaaaatga tagcgcaagg gcacctggct tgaatccatt
     1501 tgctccattt tttcataggc acggagcatg tattcaaagc ccggtccttt tttgccacgg
     1561 aaaaagaaac tggtgcctgc ataaaactgc aattgtgctg aaatgccggg ccatccgttt
     1621 ttcgatgccc attcggaccg gtttttcaaa agcgctattt tagggtccag gtcttgcaac
     1681 ttttctgact gcaatgatgt agcatacatc caggcatgct gctgcaacac tggcttcccc
     1741 tgccggccat aggtttcaga cagctgttcc agaagcctgg tacctgtatc tgccaaatga
     1801 gggaaccggt ggttttcaaa aatgctgagc agcgttttga cgcccatggg ctcgggcaac
     1861 cgaataaggc tatcgggctg tgcaaacaaa cccaaaggcg aaaccactat gtaaaacacc
     1921 agccaccagc tcaagaacca agagttccgg ctgcagcgac ggcgagtgaa gatggtaaaa
     1981 ggatctttac aggatgcgca gcttggcata gttgagcatg attttctttt cgccattctg
     2041 gtcaaacttc accgtggcga tcgggttgtg cgaggcgcct tccattttga tgactacgcc
     2101 aaaaccgaac ttctggtgct ccactttgtc gcccactttc agttcgctgg tatcgctggg
     2161 tacaaaatcg ggagcgggct tgtgctctac cacttttggt ggctgcgaag gacccacata
     2221 ggatggtttg gttggttctt ttttgccggg cggcggacca tagcgacgtt ctgcagcaga
     2281 agcgctgttg ccactgctga caccaccacg cccaccatgc agcctttcga aggcgctcat
     2341 gccgccacca aaattcatgc tgccgccctg gttgcgcagg ccgccgcctg ccatggtacg
     2401 gtcggcatat tgggtgggca cttcatcaag gaagcggctg ggatcgttgg cagtgatctg
     2461 tccaaacttg tatcggcttt gcgcataggt gagccacaac ttgcttttgg cacgggtgac
     2521 agccacataa aacaaacggc gctcttcttc cagctcttcg cgggtattga tggccatggc
     2581 attgggaaac aaactttctt ccatgccacc cacaaacaca caagggaatt ccagtccctt
     2641 ggcagcgtgg atggtcatca gctttaccac atcggcat
//
LOCUS       DATIQF010000061         3025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_16314, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000061 DATIQF010000000
VERSION     DATIQF010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3025
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16314"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            189..929
                     /locus_tag="VLL95_00920"
     CDS             189..929
                     /locus_tag="VLL95_00920"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HSR37445.1"
                     /translation="MSFNPAQKAAEISESFMSFWKYWNKEVNLCDAFSAKNDQNKDIS
                     KNEFIEMLMSGNYLPIRIPQYDSSLQYVLVGIPKTVDPAIISTIQQMAGYEKVHLSIE
                     NKLFPDFEGLDLNNIQWSRSRMEGWFMVIKTWFIKCGPCEQQRPAFEDLMQKYSNKNV
                     GFISFADDERSELSKFNEVHDVKYTIIPEQGQFIRNSLGLSSYPTYLLVDTQGIVLKV
                     SNDLKCISNELLHRAKYLNDLPPPPGAN"
     gene            1114..1665
                     /locus_tag="VLL95_00925"
     CDS             1114..1665
                     /locus_tag="VLL95_00925"
                     /inference="COORDINATES: protein motif:HMM:NF013921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HSR37446.1"
                     /translation="MSSKYQVHDNELPHFVTFTVVGWVDLFSRALYKDLLVESLSYCQ
                     QHKGLLLHAWVIMTNHVHLIVSTTGPRIPDIVRDIKKYTSKQIIQAISTHPAESRREW
                     MLNLFAFAGRNNANNTDFQFWKQDYHPIALDTGEKASQRLRYLHENPVRSGLVWEPWH
                     YKYSSAIDNYTTEKGLLPLKLLL"
     gene            complement(1844..>3025)
                     /locus_tag="VLL95_00930"
     CDS             complement(1844..>3025)
                     /locus_tag="VLL95_00930"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSR37447.1"
                     /translation="VFQTSTFVFENAEAGKAFFEVAYGLRAQKENEELGLIYSRINNP
                     DLEILEDRLTLWDKAEAAAVFESGMSAISTVLLEFLKPGDLLLYSSPLYGGTHHFIHH
                     VLNKWGVQCIEFRHGENEDMIRQRIFDSELHHKLAMIYVETPANPTNDLIDIAMCRRL
                     ANSFAKEGKEILVAVDNTYMGPLWQHPLDLGADLVMYSATKYIGGHSDVIAGAVLGNA
                     TLIKRVKTLRTFLGNMCSPHTGWLLMRSLETLKVRMEQQAINAGHVANYLQQHPKVEK
                     VYYLGFMEGDQQRIRDAQCKGNGAMLSFDVVGGEKEAFTFLNNLQLIKLAVSLGSTES
                     LAEHPATMTHVDIPPAEKAYLNISAQMIRLSIGVENYKDIIWDIEQALEKVTMPAAQL
                     A"
BASE COUNT          778 a          734 c          718 g          795 t
ORIGIN      
        1 aggatcagtt gctgcagaat aattgacgcc gtagaaaaga aatgttttgg cgcctgcaat
       61 ttgtgatttc caaaatgaat ttatcaaaag ctatgctgtt ttcaaagttc aagtttgtca
      121 gaaaatcgca gtcaatcgca atccttattg ccatttggct tttagtctca tgccgggcaa
      181 atcagagtat gagttttaat cctgcacaaa aggctgcaga aatttctgag tcatttatgt
      241 ccttctggaa gtattggaat aaagaggtca atttatgtga tgccttttcg gcaaaaaatg
      301 atcaaaacaa agatatatcg aaaaatgagt ttatcgaaat gctcatgtct ggtaactact
      361 tacccattcg tattcctcaa tatgatagtt cactgcaata tgttttggtt ggtataccaa
      421 agactgttga cccagcaata atctcgacaa ttcaacaaat ggctggttac gaaaaggtac
      481 atctctctat tgaaaacaaa ctatttcccg attttgaggg cttggatctg aacaatattc
      541 aatggagtag aagtagaatg gaaggctggt ttatggttat aaagacctgg tttataaaat
      601 gcggcccttg cgagcaacaa aggccagctt ttgaggacct tatgcaaaag tatagcaaca
      661 agaatgtcgg tttcatttcg tttgccgatg atgaaaggtc agaattatcc aagtttaatg
      721 aggtgcatga tgtgaagtat acaataatac cagagcaagg tcaatttatc agaaatagcc
      781 tcggattaag ctcatatcct acgtacctct tggtagacac acaaggtatt gtcctaaagg
      841 tgtccaatga tttaaaatgc atcagcaacg aacttttgca tcgtgcaaaa tacttaaatg
      901 atcttccgcc acctcctgga gcaaactagc gtttagtgat gcaatcaaaa attggtagca
      961 tcaaaagaga ttgtccactc tggcgcaagt gttccgccga aggcgggtca cttgtgacaa
     1021 ccaattccgc cggactgtgt ccggctccac tacgcccgcc ccttgcattt taattgctgc
     1081 ctcattagct ttctgcagca ataccagaaa accatgagtt caaagtatca ggtacatgac
     1141 aatgaattgc cacactttgt caccttcacc gtggtaggtt gggtagatct tttcagcagg
     1201 gcgctataca aagacctgct ggttgaaagc ctgagttact gccagcagca caaaggattg
     1261 ctattgcatg cctgggtcat tatgaccaac cacgtgcatc tgattgtatc cactaccggc
     1321 ccccgcattc ccgatattgt tcgtgatatc aagaaataca ccagcaagca aattatccag
     1381 gccataagca ctcatccggc agaaagccgc cgcgagtgga tgctcaatct cttcgccttt
     1441 gccggacgta acaatgccaa taacaccgac tttcaattct ggaaacaaga ctatcacccc
     1501 attgcattag acaccggaga aaaagcttcc caacggctgc gttaccttca tgaaaaccca
     1561 gtgcggagtg gccttgtttg ggagccatgg cattacaagt acagcagcgc catcgacaac
     1621 tacaccacag aaaaaggact gctcccgctg aaattgctgt tgtagaaatt tattggcgct
     1681 gcatttgata tgccggacac agtccggcga attatgcaga cacaagtgac ccgctaaagc
     1741 ggaacacttg cgccagaata acccctaccg gagagataac tgatacagcc ataaaaaaag
     1801 ccaccctttc ggatggcttt tacaggccag caatcgttat tcgttacgcc agttgggcgg
     1861 cgggcatcgt tactttttcc agggcttgtt ctatgtccca gatgatgtcc ttgtaatttt
     1921 ccactccaat actcaggcgg atcatttgtg cggaaatatt gaggtaggct ttttcggccg
     1981 gtggtatgtc cacatgcgtc atggtggcgg ggtgctcggc caggctttcg gtactgccca
     2041 ggctcacggc cagctttatg agctgtaagt tgttgaggaa ggtaaaggct tctttttcgc
     2101 cgcccaccac atcaaagctc agcatggcgc cattgccctt gcattgggcg tcgcgtatgc
     2161 gttgctggtc gccttccata aagccgaggt agtaaacctt ctccactttg ggatgctgct
     2221 gcaaatagtt ggctacgtgc ccggcattga tggcctgctg ttccatgcgc accttcagcg
     2281 tttcgaggct gcgcataagc aaccaacccg tatgagggct gcacatgttg cccaaaaaag
     2341 tacgcagggt tttcacccgc tttatcaacg tggcattgcc cagcacggcg ccggctatca
     2401 catcgctgtg gccgccaatg tatttggtgg ccgaatacat cacgaggtcg gcacccagat
     2461 ccaggggatg ctgccacaag gggcccatgt aggtattgtc taccgctacc agtatttcct
     2521 tgccttcttt cgcaaaactg ttggcgaggc gtcggcacat ggctatgtcg atgaggtcgt
     2581 tggtggggtt ggccggcgtt tccacataga tcatggccag cttgtggtgc agctcgctgt
     2641 cgaatatgcg ctggcggatc atgtcttcgt tttcgccatg cctgaactca atgcactgca
     2701 caccccactt gttgagcaca tggtggatga agtggtgcgt gcccccgtac agcgggctgc
     2761 tgtacaacag cagatcgccg ggcttcagaa actccagcag cacggtgctg atggcgctca
     2821 tgccgctttc gaacacagcg gccgcttcgg ctttgtccca aagggtgagg cggtcttcga
     2881 gtatctccag gtcggggttg ttgatgcggc tgtagatcag ccccagttct tcgttttctt
     2941 tttgtgcccg caggccatag gccacttcaa aaaatgcctt gcctgcttcg gcattttcaa
     3001 acacaaaggt gctcgtttga aaaac
//
LOCUS       DATIQF010000062         4573 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_61911, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000062 DATIQF010000000
VERSION     DATIQF010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4573
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61911"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..860)
                     /locus_tag="VLL95_00935"
     CDS             complement(<1..860)
                     /locus_tag="VLL95_00935"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HSR37448.1"
                     /translation="MSKILIIDDERAIRNTLMEILQHEGYKIDTAENGEDGFEKFKKN
                     SYDVVLCDIKMPRMDGLEFLEKSREVNPDVPLIMISGHGNIDTAVEAVKKGAYDYISK
                     PPDLNRLLITIRNATDKTTLVTEAKTLKRKISKVQEIIGESEPIKKIKETIAKVAPTD
                     ARVLITGENGVGKELVAKWLHELSNRNKGPLVEVNCAAIPSELIESELFGHEKGSFTS
                     AVKQRIGKFELANEGTLFLDEVGDMSLDAQAKVLRALQEGTITRVGGDKEIRVNVRVV
                     APTNKNLMEEV"
     gene            complement(903..1682)
                     /locus_tag="VLL95_00940"
     CDS             complement(903..1682)
                     /locus_tag="VLL95_00940"
                     /inference="COORDINATES: protein motif:HMM:NF014774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HSR37449.1"
                     /translation="MNVKTMAQWASEGSTPEILFWVGCAGSFDQRAQKVTKAFAQILD
                     AAGITYGILGAEEMCTGDPERRAGNEFLFQMMAFQNIQVLNGYGIKKIVTTCPHCFNT
                     LKNEYHDLGGHYEVIHHTTLLQQLINEGKVKLKGGGSFKGKRITYHDSCYLGRANNIY
                     EAPRAVLEALDAELVEMKRCRSNGLCCGAGGAQMFKEEEKGSTRVNWDRTKEALETGA
                     GIIAAACPFCNTMMTDGVKVNEKENEVQVLDVAELVAQSLA"
     gene            1820..2503
                     /locus_tag="VLL95_00945"
     CDS             1820..2503
                     /locus_tag="VLL95_00945"
                     /inference="COORDINATES: protein motif:HMM:NF013933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HSR37450.1"
                     /translation="MNPLLRVALWGLGISALGTLPLGTLNIAAMQISMAEGVRNAAMF
                     SLGVALVEMAYLRISIIGINWIRHHATLLRDMDWLAFLVVAALAVSSFIAASDPSGET
                     KNVILNAEVNSFVLGMGMSAVNPMQVPFWFGWSTILFSKGVLHANRPHYNSFTTGAGI
                     GTIIGLAVFVLGGQFIVQRLNDNQQVINYVIASIFAITALVFLYKIVFNKGAAASLEK
                     KGVQVDDKH"
     gene            complement(2500..3438)
                     /locus_tag="VLL95_00950"
     CDS             complement(2500..3438)
                     /locus_tag="VLL95_00950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37451.1"
                     /translation="MSKAAKYSLLSISLATGLFLVVLWIKCEYVPDKLRIPANTILNT
                     QSSADTAIYFIGSSRVGNGIDAPFLQTTLGKPVHILSFAGGTFLANSILANHLLQQPG
                     HKIILVELSSVTPNITAEFLTMLRVNRVSIAEHLWQLLKQDNGWEYRHFYLTLLNDVM
                     LQHFNLNTDMKWIVGTKQPVLSRFKALQGNKVLSASSFLQPQQMQNVETPPSPGAAHL
                     MQLVRMIQSTAAGQHKQVLFFSPLNFRSSGERPMVANVWQRLPETERIGYSDDWLKAV
                     SRPEYLHDEIHLNVHGARVFSKGWVPVLDSLLHLRH"
     gene            complement(3438..>4573)
                     /locus_tag="VLL95_00955"
     CDS             complement(3438..>4573)
                     /locus_tag="VLL95_00955"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015049.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MBOAT family O-acyltransferase"
                     /protein_id="HSR37452.1"
                     /translation="LVPLLLLPLLVEKATHLTPHYILGSQGTNTNAATNFALIIGLSY
                     FTFNAISYLVDVKRRYIEPERSFPSLLFYLLFFPALLSGPLHRYKFINNQLNDIGWSL
                     QSLSNGSVLLLWGFFKNMVVAQRLQYMLNGTEATGWFVLVHGLLFFLFLYVNFSSFID
                     IVQGIALLFNLQLKSNFHNRVYMACSRQQFWQGWHITLNEWFRDYFFFSVARFDKQRR
                     YTNLLLLVTFLLIALWHGFTLVLLVWGLLNGTWIIAEKKWMGKWQPRTWWQKTAGRLY
                     HLGLASVLAALFITPSLGSLLNRFLDHSHLSLAKGGGYVLIVLIIAFAGMDWLNTKAG
                     DKRMDVYLQTLPYWQRTMLCGALLTAIFLFGLTNSITNYYIRF"
BASE COUNT         1061 a         1143 c         1177 g         1192 t
ORIGIN      
        1 acttcttcca tcaggttttt gttggtaggc gctaccaccc gaacgttcac ccggatctcc
       61 ttgtcgccac ctacacgggt aatggtccct tcctgcaggg cccgcaacac tttggcctgt
      121 gcatcaaggc tcatgtcgcc cacctcgtcc aggaaaagcg tgccttcatt ggccagttca
      181 aacttgccga tgcgttgttt taccgcggag gtgaaagatc ctttttcgtg cccgaacaat
      241 tcgctttcga tcaattcgct gggaatggct gcgcagttca cttccaccag tggtcccttg
      301 ttgcggttgc tgagttcgtg cagccatttg gccaccagtt ctttgcccac gccgttttcg
      361 ccggttatca atacccgggc atcggtagga gctaccttgg caatggtttc cttaattttt
      421 ttgatgggct cactttcgcc aatgatctcc tgcaccttgc tgatcttgcg cttcagcgtt
      481 ttggcttctg tcaccagcgt ggtcttgtcg gtagcgttgc gaatggtgat gagcaggcgg
      541 ttgagatcgg gcggcttcga gatatagtcg taggcgcctt ttttcacggc ttccacggcg
      601 gtgtcgatat tgccgtgacc gctgatcatg atgagtggaa catccgggtt gacttcgcgg
      661 ctcttctcca ggaattccag gccatccatg cggggcattt tgatgtcgca cagtaccaca
      721 tcgtagctgt tcttcttgaa tttttcgaag ccatcctcgc cgttttccgc ggtgtctatc
      781 ttgtagcctt cgtgctgcaa aatttccatc agcgtattgc ggatcgccct ttcgtcgtct
      841 atgatcagaa ttttcgacat gctatagtcc actcattttt taagcactgt ttgatgcagt
      901 aatcatgcca aactttgggc caccagttcg gccacatcca gcacctgcac ttcgttctct
      961 ttttcgttca ctttcacgcc atcggtcatc atggtgttgc aaaacgggca agccgcagct
     1021 ataatgccgg cgccggtttc cagggcttcc ttggtgcgat cccagttgac acgggtgctg
     1081 cccttttctt cctctttgaa catttgtgca ccgccggcac cacagcacaa accgttgctg
     1141 cgacagcgct tcatttccac caactctgca tccagtgctt ccagcacggc acggggcgct
     1201 tcgtaaatgt tgttggccct gccgaggtag cagctgtcgt ggtaggtaat gcgttttcct
     1261 ttgaaactgc cgccgccttt cagtttcact ttgccctcgt tgatgagttg ctggagcaaa
     1321 gtggtatgat ggatcacttc gtaatgacca cccaggtcgt ggtactcatt cttgagagta
     1381 ttgaaacaat gcggacaggt ggtaacgatt tttttgatgc cgtatccgtt gagcacctgg
     1441 atattctgga aggccatcat ctgaaacagg aattcattgc cggcccttcg ttccgggtcg
     1501 ccggtgcaca tttcttcggc acccagtatg ccgtaggtga tacctgcggc gtccaggatt
     1561 tgcgcaaagg ctttggttac tttctgggcc cgctggtcaa aactgccggc acatcctacc
     1621 caaaacaaaa tctcaggtgt tgatccttcc gatgcccact gggccattgt ttttacgttc
     1681 atatagctgg taatccttac tgcaaaaatg agggaatgaa ggtatggttt accatgcagt
     1741 tcatcacatt ttgtaaatgt tggcaaaagg ctcaggggca gccagttatc tttggcgctt
     1801 tcccggaaaa tctattgata tgaatccatt gctgcgggtg gctttgtggg ggttgggcat
     1861 cagtgcgctg ggtactttgc ctttaggcac actcaatatt gctgccatgc aaataagcat
     1921 ggccgaaggc gttcgcaatg cggccatgtt cagcctcggc gtggcactgg tggaaatggc
     1981 ttacctgcgc atcagcatca tcggcatcaa ttggatcagg caccatgcca ccttgttgcg
     2041 agacatggat tggctggcct tcctggtggt agccgcgttg gcggtcagca gtttcattgc
     2101 cgcttcagac ccctccggcg aaaccaaaaa cgtgatcctc aatgcggaag tcaactcctt
     2161 tgttttgggc atgggcatga gtgcggtcaa cccgatgcag gtgcccttct ggtttggctg
     2221 gagcaccata cttttcagca agggtgtgtt gcatgccaat cgtccgcatt acaatagttt
     2281 cactaccggc gccggcatag gcaccatcat aggattggct gtttttgtat tgggcgggca
     2341 gttcatagtg caaaggctga acgacaacca gcaggtgatc aactatgtca ttgccagcat
     2401 atttgccatt acagcactcg tgtttctgta caagatcgta ttcaacaaag gcgcagcggc
     2461 atcgctggag aaaaaaggcg tgcaggtgga tgacaagcac tagtgtcgca agtgtagcaa
     2521 actgtccagt accggtaccc agcctttgct gaaaaccctg gccccgtgta cattcaggtg
     2581 aatttcgtcg tgaaggtatt ccggccggct taccgctttc agccaatcat ccgaataacc
     2641 aatcctttcg gtttccggca gtctttgcca gacgttcgcc accattggcc gttcgcctga
     2701 tgaccgaaaa ttcaaaggag aaaagaataa cacctgcttg tgctggccgg ctgctgttga
     2761 ttgaatcatt cgaaccagtt gcatgaggtg ggcggcaccc ggcgaaggag gtgtttcgac
     2821 gttttgcatt tgttgtggtt gcaggaagct ggatgcggac aaaaccttgt tgccctgcaa
     2881 tgccttgaaa cggctgagaa caggttgctt ggtccccacg atccatttca tatccgtgtt
     2941 caaattgaaa tgctgaagca ttacgtcatt cagcagggtg aggtaaaaat ggcggtattc
     3001 ccaaccatta tcctgtttta gcaattgcca aagatgttcc gcaatgctca ccctgttcac
     3061 tcgcaacatc gtcaggaatt cagccgtgat attgggtgtg accgatgata attcaaccag
     3121 gattatttta tgacccggtt gctgaagcaa atgattggcc aaaatgctgt tggccagaaa
     3181 agtcccaccg gcaaaactga gtatgtgcac aggtttaccc aatgtagttt gcaggaatgg
     3241 ggcatcaatg ccattgccca cccggcttga gccaataaaa taaatggccg tatctgctga
     3301 cgattgggtg ttgagtattg tgttggctgg tatgcgcagt ttatccggca catactcaca
     3361 cttgatccag agcacaacca ggaaaagacc ggtggccagg gaaatggaaa gcagtgaata
     3421 tttagcggcc ttgctcatta aaaccgaatg taataattgg tgatgctatt ggtaagtcca
     3481 aataagaaaa tggcggtcag caatgcgcca cagagcatag tgcgttgcca gtagggaagt
     3541 gtttgcaggt atacatccat gcgtttgtct cctgcttttg tattcagcca atccatgccg
     3601 gcaaaggcaa tgatcaatac tataagcaca tagccgccac ctttggcaag cgacaaatga
     3661 ctatggtcaa gaaaacgatt gagcaggctg cctagagatg gcgtgatgaa caatgctgcc
     3721 aatacgctgg ccaggcccag gtgatacaaa cgaccggccg tcttttgcca ccaggtgcgg
     3781 ggttgccatt tgcccatcca ttttttttcg gcaatgatcc aggtcccatt gagcaggccc
     3841 caaaccagca ataccaacgt gaagccgtgc cagagggcaa tcagcaaaaa ggtaaccagc
     3901 agcaggaggt tggtatagcg tcgttgcttg tcgaagcggg ccacactgaa aaagaaataa
     3961 tcccggaacc attcgttgag tgtgatgtgc cagccctgcc aaaactgctg ccggctgcaa
     4021 gccatataca cccggttgtg aaagttagac ttcagttgca gattgaagag caacgcaatg
     4081 ccttgtacga tgtcgatgaa ggaactgaaa ttgacataca gaaacaggaa gaacaaaagc
     4141 ccgtgcacca gcacaaacca gccggtagct tcggttccgt tgagcatgta ttgcaatcgc
     4201 tgcgcgacca ccatgttttt gaaaaacccc cagagcaaca atactgaacc gttactcaac
     4261 gactgcaggc tccagccgat atcgttgagt tgattattga tgaatttgta acgatgcagt
     4321 ggtcctgata ggagcgcagg aaagaatagc aggtagaaaa gaagactggg aaaagatcgc
     4381 tccggctcga tgtagcgccg ctttacatca acgaggtagc taatggcatt gaaagtgaaa
     4441 taagaaagac caatgatcag tgcaaaattc gttgcagcat ttgtgttggt tccctggctt
     4501 ccgaggatgt aatgcggggt gaggtgggtg gctttttcca cgagcagtgg caacagcagc
     4561 agcggcacca aat
//
LOCUS       DATIQF010000063         4712 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_122827,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000063 DATIQF010000000
VERSION     DATIQF010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4712
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122827"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1617
                     /locus_tag="VLL95_00960"
     CDS             <1..1617
                     /locus_tag="VLL95_00960"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR37453.1"
                     /translation="TWSTQGGLDYRLVQGKRVSDARTADAFVRKGLVQVQSNWNTNVN
                     IFSTLNFNHTINDKNAIDGVVGYEYRSEDNSSITASGDGFPSYQFTSLQNAANPVSVS
                     EFTTGFRRNGVFANVNYNFDRRILLGGTVRYDGSSRFGEDYKFGTFFGVKAAWNMQEE
                     AWLKGAKSISLLRLRVGYGTTGNDQIGNFDALALYGGGGVYNGSAGIAYTQLANPALR
                     WETNATANIGLDFAFFGNRLNGAVEFYDKQTRNLLITQPLQWTTGFDGFTSNVGRLEN
                     RGIELTLGGDVVKARRTGDLNWNVNFVFAYNQQKVKELYGGNKILPSDPSIQVGQSAG
                     VLFTQKYAGVNAATGRAMWYDTLGNLTYQVQNRDRVILGPTRLPLFQGGLRNTFSYKG
                     FTLDVFFQYEYGRWATDGQINFLVESLARINNLTDYYDSRWTKAGDVSWIPRQNANGA
                     ESKGSAQGGGNRNWFKADYIRLKNVSLSYDFSGDFLTRLKLTNARFYVQATNLWTYSD
                     WYSYDVEFVGTATGIIPQSKNYTVGVQLGF"
     gene            1646..3208
                     /locus_tag="VLL95_00965"
     CDS             1646..3208
                     /locus_tag="VLL95_00965"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSR37454.1"
                     /translation="MKKQIIKYSFIALALSVATVGCKKQLEIEPQQSIPAETALTTAE
                     NIDASIVSFYARLKNARQYGRDLITHPEALADNGYATNKSGRLLAESNNNFGAHFTGT
                     IWQNSFAAINQINLTLEAIPKLNVVPAPTPARIAFWEGQCYFLRALYYFDMMRVYAYI
                     PGAVFDAQNRGGVPLMLKGTGNLDSAIKVAPARAPIEAVYQQVISDLLLAEPRLGFGS
                     TTDVALANQAAARLLAARVYLYMKQFDKAKEMADKVIAQAASRMTTTSDYVSQWRAAT
                     HLETLFQVRFAQNNENIGVNESLQTSFTTLVTPGNTAVTGGFGDLVPTITLLNDLGIT
                     MTGGNTNTVFLNDNKSIASRNNDVRNQLYEVGTRGRGTNFVECTKYLGKNGFINLDNV
                     PLLRISEAYLIRAEVAATTGSTVFSEDNARADLKFLKSRRIVGYAGSSEEASDNALTG
                     NALFSEIFRQRRIEFAYEGHRFFDLKRLGRDIVKSAPSTAVVTFTDARILPPIPQREV
                     DGNSNLKQNFGY"
     gene            3371..3733
                     /locus_tag="VLL95_00970"
     CDS             3371..3733
                     /locus_tag="VLL95_00970"
                     /inference="COORDINATES: protein motif:HMM:NF027458.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4843 domain-containing protein"
                     /protein_id="HSR37455.1"
                     /translation="MMARVPIFGFATPTSSPAITRATGTVRLRVNLLGPQTGTDRSFS
                     FKFNASESTGVEGTHFSIANKSGVIKANESFGFVDVAILNPGQSTGSRTVVLELVETA
                     DLKPATNYAKIGLSINQQ"
     gene            4006..>4712
                     /locus_tag="VLL95_00975"
     CDS             4006..>4712
                     /locus_tag="VLL95_00975"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSR37456.1"
                     /translation="MRRIALAFLCLVWALGALAQGKTVTGKVTDSKDGSALAGVTVTV
                     QGATGGTSTGSDGSYSIAVGANAKNLVFSYVGFQTVTLAIPASGVLNVSMAAEEAKLE
                     EVVVVGYGTQQKKAFTGSAAKVDAKQFANLVTPSVDRQLSGRAAGVQVATPGGLVNTP
                     ARIRVRGINSISGNLSPLIVVDGVPFINGNLAGTTNSNALGDINPNDIENIEVLKDGS
                     ATAIFGSRAAGGVIMITT"
BASE COUNT         1220 a         1117 c         1146 g         1229 t
ORIGIN      
        1 acctggagca cccaaggagg cctggattat cgccttgtcc aaggaaagag agtatctgat
       61 gcccgcaccg ctgatgcctt tgtgcggaaa ggtttagtgc aggtacagag caactggaat
      121 accaacgtta atatattctc cacattaaat ttcaatcata ccatcaatga caaaaatgcg
      181 attgacgggg tggtaggtta tgagtaccgt tcggaagaca actcatctat tacggcttcc
      241 ggcgatggct ttccatctta ccagtttacc agtcttcaaa atgcagccaa ccctgtttct
      301 gtgagtgagt tcaccactgg tttccgtcgc aatggagttt ttgccaacgt caattacaat
      361 ttcgatcgtc gaattctcct agggggtact gtgcggtacg acggctcttc ccgttttggc
      421 gaggattata aattcggtac tttcttcggt gtgaaagctg catggaatat gcaggaagaa
      481 gcatggctca aaggtgcgaa aagtatttcg ctgcttcgtc ttcgggttgg atacggcaca
      541 actggtaacg accagattgg caacttcgat gcgcttgctc tttatggtgg cggtggagtc
      601 tacaatggca gtgccggtat tgcttatact cagttagcca accctgcgtt gaggtgggaa
      661 acgaatgcta ctgcaaatat tggattggac tttgcctttt ttggcaatcg actgaacggt
      721 gcagtagaat tttatgataa gcaaaccagg aatttgttga ttacccagcc tttgcagtgg
      781 actacaggtt tcgatggctt cacttctaat gttggacgcc tcgaaaaccg tgggatagaa
      841 ttgaccctgg gtggagatgt agtgaaagct cgcagaacag gcgatcttaa ctggaatgta
      901 aacttcgtat ttgcttacaa tcagcaaaag gtaaaggaac tatacggtgg caacaaaata
      961 ctgccttcag accccagcat ccaggttggc cagtcggcag gcgtactttt cacccagaag
     1021 tatgctggtg tgaacgcagc gaccggccgt gctatgtggt atgatacttt gggcaatctt
     1081 acctaccagg tacaaaaccg tgatcgggtg atactcggac cgacacggct gcctcttttc
     1141 cagggtgggt tgagaaacac tttcagctac aaagggttta cactggatgt gttcttccaa
     1201 tatgaatatg gccgctgggc taccgatggt cagatcaact tcctggtgga aagcctggca
     1261 cggatcaaca atctcacgga ttattacgac agtagatgga ccaaggccgg agatgtttcc
     1321 tggattcctc gacaaaatgc caatggtgct gaaagcaaag gctctgcgca aggaggagga
     1381 aaccgcaact ggtttaaggc tgattatatc cgtttgaaaa acgtttccct ttcttatgat
     1441 ttcagtggtg attttcttac tcgtttaaaa ctgaccaatg cccgcttcta tgttcaggct
     1501 actaacctgt ggacgtacag cgactggtac agttatgatg tggaattcgt gggaaccgcc
     1561 actggtatca ttcctcagtc gaagaactat actgtagggg tgcagcttgg attctaataa
     1621 ctgatcaaaa gaaaaattag aaaagatgaa aaagcaaata attaaatatt ccttcatagc
     1681 gttggcgctt agtgttgcca ctgtcggctg caagaagcag ttggagattg agccacagca
     1741 gtcgattcca gcagagacag cactgactac ggcagagaat attgatgcct ccattgtatc
     1801 cttttatgcc cgcttgaaaa atgcccgcca atacggacga gacctgatca cacatcctga
     1861 agctctggct gataacggct atgccacgaa taaatccggt cgattgttgg ctgagagcaa
     1921 caacaacttt ggggcccatt tcaccgggac catttggcaa aatagtttcg ctgcaatcaa
     1981 ccagatcaac ctgacactgg aagccattcc aaagctgaat gtagtacctg ctcctacgcc
     2041 tgctcgtata gctttctggg aggggcagtg ctatttcctg cgtgccctct attattttga
     2101 catgatgcgt gtctacgcct acataccggg tgctgtattc gatgcacaaa atcgcggggg
     2161 cgtgcctttg atgctgaagg gtactggtaa tctcgactct gctattaaag tagctcctgc
     2221 ccgtgcaccc attgaagcag tataccagca ggtaatttcc gatttgctgt tggctgaacc
     2281 aaggcttggc tttggatcga ctaccgatgt agctcttgcc aatcaggcag cagcccgatt
     2341 acttgcagcc cgtgtttact tatacatgaa gcagttcgat aaggccaaag aaatggctga
     2401 caaagttatt gcacaagcgg cgtcaagaat gactactacc agtgattatg tatcccaatg
     2461 gcgtgcagct acccatcttg aaaccctttt ccaggtgcgt tttgctcaaa acaatgagaa
     2521 cattggtgtg aatgagtcat tgcaaacctc ctttacaact ctggttaccc ctggcaatac
     2581 agcggtcacc ggtgggtttg gcgatcttgt tcccactatc accctgctta atgaccttgg
     2641 cattaccatg acaggtggaa acaccaatac ggtattcctc aacgacaata aatcaatagc
     2701 gtctcgcaac aatgatgtaa gaaatcagct gtacgaggta ggcactcgcg gacggggcac
     2761 caactttgtt gaatgcacaa aataccttgg gaaaaatggg tttatcaacc tcgacaacgt
     2821 gcctttgctg cgcatttccg aggcttacct tattcgtgca gaagtagccg ctactacagg
     2881 ctcaactgtt ttcagcgaag acaatgcacg ggcagatttg aaattcctga agtcaagaag
     2941 gattgtaggg tacgccggtt cttcagaaga agcatctgac aatgctctta ccgggaatgc
     3001 tctgttttca gaaatttttc gccagcgccg tatagaattc gcatatgaag gacaccgctt
     3061 ctttgacctg aagcgcctgg gccgggacat cgtaaagtct gcaccctcaa cggcagtagt
     3121 aacatttacc gacgccagaa ttcttcctcc tattcctcag cgtgaagtgg atggcaactc
     3181 caatctgaaa caaaattttg gttactaata aacgtgtaca gccatgaaga aattgatcat
     3241 tatgtctttt gtcggtatca gcctaatgat gacggcatgt attaaaaacg aggttgcgac
     3301 ctttactgga aatcaaatag aatgggatgc tgcatcatgg aatgccaacg ccgccgggtt
     3361 aacctttcca atgatggcaa gagtacccat attcggtttt gctactccca cttcctctcc
     3421 tgccattaca agagcgactg gaactgtaag gttgagggta aacctattgg gtccccaaac
     3481 aggtaccgat cgcagctttt ccttcaagtt caacgccagt gaatcaaccg gcgtggaagg
     3541 cacccacttt tccattgcca acaaatccgg cgtgatcaag gccaatgaaa gctttggttt
     3601 tgtggatgtg gccatcctga acccgggaca gtccaccggt tcacgcaccg tggtgctgga
     3661 attggtagaa actgccgatc tgaagcctgc cacgaactat gccaaaattg gtttgagcat
     3721 caaccagcaa taagctactg gaacgatttc aggttaggac agccggtatt ccggctgtcc
     3781 ttttcttttt tacaaaatgt ttgaactact ataacaaatt gttataaaaa ataattattg
     3841 ggcagcgcat cgttaaacac aaagtttttg tctatttgcc ggccttggtt gttgcttgcc
     3901 ttgccaaaac gattcttttt cgagaaatgc ggtcgtaatg tccgcatatt agtgttttgg
     3961 cgcggctgta acagcttggg aatcatctaa aacaaattgt atactatgag aagaattgca
     4021 ctcgcattcc tgtgccttgt ttgggcactg ggagccctgg ctcagggcaa gaccgtgacc
     4081 ggtaaggtca ccgatagcaa ggatggctct gctttagccg gagtaactgt aactgtccag
     4141 ggagcaactg gtggcaccag taccggctct gatggatcgt actccatcgc ggtaggagca
     4201 aatgccaaaa accttgtttt cagctatgta ggttttcaga ccgtaaccct ggccattcca
     4261 gccagcggcg ttttgaatgt aagtatggcg gctgaagaag ccaagttgga agaagtagtg
     4321 gtggtaggtt atggcaccca gcagaaaaag gcctttaccg gttctgccgc taaagtagac
     4381 gccaagcaat ttgccaacct ggttaccccc tctgttgacc gccagttgag tggtcgcgcc
     4441 gccggtgtac aggtagccac ccccggtggt ttggttaaca cccctgcccg tatccgtgtt
     4501 cgcggtatca actctatctc aggcaacctc agcccgctga tcgtagtgga cggtgttcct
     4561 ttcatcaacg gcaacctcgc cggtaccacc aactccaatg ccctgggtga tatcaacccc
     4621 aacgacattg agaacatcga agtactgaag gacggttctg ctaccgccat cttcggtagc
     4681 cgcgctgccg gtggtgttat catgatcacc ac
//
LOCUS       DATIQF010000064         2616 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_274827,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000064 DATIQF010000000
VERSION     DATIQF010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2616
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274827"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..703)
                     /locus_tag="VLL95_00980"
     CDS             complement(<1..703)
                     /locus_tag="VLL95_00980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37457.1"
                     /translation="MRTASFVLLLTGILLLPAFRASAQSCNNGPAGMGNLNFNALLLS
                     GSSLFGATSAGLFVSANNGQTWQPVSSPDLRQVEVRQLVASATHLYAATFGRGLYRSA
                     DNGQSWQRVTLGYNARFFHSIAAAGSTLIASAGTEGLFVSANEGANWTRIQSPGPYTL
                     LPNMITNAADMREAYNLAMTNGNACLLFSLAVVENTQGYLSNAKAGDIMAQSYQLARQ
                     QHTAPLLFEIARYENS"
     gene            complement(1167..1817)
                     /locus_tag="VLL95_00985"
     CDS             complement(1167..1817)
                     /locus_tag="VLL95_00985"
                     /inference="COORDINATES: protein motif:HMM:NF036911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamine glutaminase family protein"
                     /protein_id="HSR37458.1"
                     /translation="MPVPLSLTLYDYRLADPLAVPAPLEEAAVQEVFHLLDSEPLFQW
                     QRNHNFCEARAEAASLLLEAAGLPHAKCWVFGAAFLYKGYVGGLLNHWNYHVAVAMPV
                     QQNGRLQWLVLDPSTARGPLSAEAWASAVTAYPHSYHLLKQADYYIFPAPGSKKPNWY
                     RRHHRNFRLAMQGLAGINSLRPTGKAQLVFDKQNIARTTHQFRQLLHRMQGWQGVE"
     gene            complement(2219..>2616)
                     /locus_tag="VLL95_00990"
     CDS             complement(2219..>2616)
                     /locus_tag="VLL95_00990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37459.1"
                     /translation="NAWGALVIPIVTWLLLWLTQRRVFGPAPSILFPWQVVLSFLSAL
                     VFGLCLGLSIAYGFKTFSGNVPAILFVLALLFPVYRAEYFLGFILGLTYFIGGVLPVM
                     VGFVFLLLAAAVHLLLRPLLLKLVALVKT"
BASE COUNT          632 a          618 c          828 g          538 t
ORIGIN      
        1 cgctgttttc gtagcgggct atttcaaaca gcaggggggc ggtgtgttgc tgccgggcca
       61 gctggtaaga ctgtgccatg atgtcgccgg cttttgcatt ggagaggtag ccctgcgtgt
      121 tttctaccac cgccaggctg aacagcaggc aggcatttcc attggtcatg gccaggttat
      181 aggcttcccg catatccgca gcattcgtga tcatgttggg cagcagcgtg taggggccgg
      241 gtgactggat ccgggtccag ttggcccctt cattggccga tacaaaaagc ccttctgtac
      301 cggcactggc aatgagggta gatccggcag cggcaatgct gtgaaagaag cgggcattat
      361 agcccagggt tacccgctgc cagctctggc cattgtcggc cgagcggtag aggccacgac
      421 caaaagtggc tgcatacaaa tgggtggcac tggctaccag ctgtcgtacc tcaacctggc
      481 gcaagtcggg gctggatacc ggctgccagg tctggccatt gttggccgat acaaacaatc
      541 ctgcactggt agcgccgaaa aggctgctgc cgcttagcag cagggcattg aagtttaaat
      601 tacccatgcc cgccgggccg ttgttgcacg actgtgccga agcacgaaaa gcaggcaata
      661 gcaggatacc ggtgagcaat aaaacaaacg atgcggtgcg catggcggag ggttttttgg
      721 tgatagcaag gatcgctggt gggcagagac cattggaaaa ttaaaatagc caaaaaacag
      781 caagccttgt agtcccctct tcagggtatt tatggccagg tggttggcgc tggttcgggg
      841 tgggaggatg ggacgcaggt accacggatt gcagggagca gatttacgcg gagaggagaa
      901 tgggacgcgg atgacacaga ctgagcggtt tttcgcggat aaggaaaaca tttgacgctt
      961 gtgcttttct accgtcgctg ttggtgtttt caccaacagt tcttgccgct tgtgcttttc
     1021 ttgtaatcgc cgtgtctgcc acgggcgaca cggcagtggg tgatgggcta tgattaacgc
     1081 cgtgtcctgc ggggtagcgg cacggctggt acaaaatcct tcgccgtgtg ttttgaggcg
     1141 gcggcaaggc tgggaggaag cgtctgtcac tccacgccct gccagccctg catgcggtgg
     1201 agcagttgcc ggaattggtg ggtggtgcgg gcaatgtttt gtttgtcaaa taccagttgg
     1261 gctttgccgg taggcctaag gctgttgatg ccggccaggc cctgcatggc caggcggaag
     1321 ttgcggtggt ggcgccggta ccagttgggt tttttgctgc cgggagcggg aaagatgtag
     1381 tagtcggctt gcttgagcag gtggtagctg tgcgggtagg cggtgacggc gctggcccat
     1441 gcttcggcgc tcagcgggcc acgggcggtg gaggggtcca gcaccagcca ttgcagccgg
     1501 ccgttctgct gcaccggcat agccacggct acgtggtagt tccagtggtt gagcaggccg
     1561 cccacatagc ccttgtacaa aaaggccgct ccaaacaccc agcatttggc atgcggcagg
     1621 ccggccgctt ccagcagcag ggaggccgct tcggccctgg cctcgcaaaa gttgtggttg
     1681 cgctgccatt gaaacaaagg ctcgctgtcg agcaggtgaa atacttcttg caccgctgcc
     1741 tcttccaggg gggcgggtac ggccagtgga tcggccaggc gataatcgta gagggtaagg
     1801 gatagcggaa caggcatgcc cgcacaaggt aagggtatcg ggggaatggg gaggaatggt
     1861 gaatgatgaa ttatgaatga tgagtaatga atgaggaata agaaataaga aataaggaat
     1921 aagaaataag gaattaggaa ttagggatga ggaattagga ataagaaata aggaataaga
     1981 aagtgggagt tgcagatctg gtgaaagggc tttgatattg caaatgttga agagcggttt
     2041 ccgtttcact gcgggtaaaa acgggaggga agttttcgat gtaacgcagc agttcattcg
     2101 gccgcaatac tttaccgccg ctgttggtgt tctcaccaac agttcctggc actcacttag
     2161 aaatttttcg tgtgacacga accaaggcaa cgagaagaca atcgttcaag ggtttgtgct
     2221 atgtttttac caaggcaacc agcttaagca gcaaaggccg cagcagcagg tgtaccgctg
     2281 ccgccagcag caaaaacacg aagccaacca tcaccggcag cacgccgcca atgaaatagg
     2341 tgagcccaag gataaagccg aggaagtatt cggcccggta cacgggaaat aataaggcca
     2401 gcacaaaaag aatggccggt acattgcccg aaaaagtttt gaaaccataa gcaatactca
     2461 aaccaagaca caggccaaat accagggcgc tcaaaaagga aagcactacc tgccagggaa
     2521 acaggatgga tggcgcaggg ccaaatacac ggcgctgcgt cagccaaagc aagagccagg
     2581 taactattgg aatcaccaat gccccccatg cattcg
//
LOCUS       DATIQF010000065         3332 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_46898, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000065 DATIQF010000000
VERSION     DATIQF010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3332
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46898"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1181)
                     /locus_tag="VLL95_00995"
     CDS             complement(<1..1181)
                     /locus_tag="VLL95_00995"
                     /EC_number="4.1.1.32"
                     /inference="COORDINATES: protein motif:HMM:NF003253.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004611 - phosphoenolpyruvate
                     carboxykinase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0017076 - purine nucleotide binding
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (GTP)"
                     /protein_id="HSR37460.1"
                     /translation="MFDQNDYFFSKAEPIAAELQKWVEAMASHLKPDNIYWCTGTDEE
                     YNELCGQLVEKGTFIKLNPEKRPNSYACFSDPSDVARVEDRTYICSRRKDEAGPTNNW
                     MDPKEMKGILEGLTAGAMLGRTMYVIPFCMGPVGSPLSRYGVEITDSEYVVVNMKMMT
                     RMGSQVLDHMKPGEWVKCIHTVGAPLHPGQQDVKWPCNPTVKYISHFPEERLIISYGS
                     GYGGNALLGKKCFALRIASVMGHEEGWLAEHMLILGVESPEKEKTYVAAAFPSACGKT
                     NFAMMIPPNGLEGWKVTTVGDDIAWIHKGADGKLYAINPEAGYFGVAPGTNEKTNPNA
                     MASIARDTIFTNVGITPDGDVWWEGMSKEVPEGLIDWHGKPYDKNSGKPVAHPNARFT
                     AP"
     gene            1417..1689
                     /locus_tag="VLL95_01000"
     CDS             1417..1689
                     /locus_tag="VLL95_01000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37461.1"
                     /translation="MKYNATTLQKLERILTESNYIYRYEIGTFQSGYCILEQKRVVVL
                     NKFLSVEGRINTLMELIPQLDINKDMLTQESQKTYEEVIKAAATTA"
     gene            1776..2546
                     /locus_tag="VLL95_01005"
     CDS             1776..2546
                     /locus_tag="VLL95_01005"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSR37462.1"
                     /translation="MQALTITFLGTGTSSGVPMVACDCEVCSSEEPKDKRLRSSILVQ
                     SGSTTIVVDATPDFRQQMLQHQVKRIDAILLTHAHKDHVGGLDDTRGYQFFQQQPTSI
                     YGTALALEGVRREVPYAFAEHKYPGVPVYELHEIDDHPFAIGDIEITPIRVMHYKMPV
                     SGFRFGNFTYITDANFIAEEEKNKIRGSHTLVLNALRKEKHLSHFTLNEAVALAQELG
                     VKQAYFTHISHQLGLHYQINEELPMGIELAYDGLQLMC"
     gene            2584..>3332
                     /locus_tag="VLL95_01010"
     CDS             2584..>3332
                     /locus_tag="VLL95_01010"
                     /inference="COORDINATES: protein motif:HMM:NF024245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HSR37463.1"
                     /translation="MPRYQHRFQHWLKDYFLFSKWQRRAILLLVLIIVTCLGLQAWWK
                     QRGALAFEQAPPLVMQEVEALAAYEPDSNQAEETASASWREPVATNREPAQYFAFDPN
                     TATAQELLQLGMPAKAVQALLKYRAKGGRLRQPEDLLKIYSLPKTTATALVPWVRIAA
                     VPDNKTYTYHRDSFANRPARPAPASVDINTADTTALIALPGIGSRLAARIVNFRDKLG
                     GFYSINQVAETYALPDSTFQKIRSRLVLSSGP"
BASE COUNT          794 a          925 c          858 g          755 t
ORIGIN      
        1 ggggcggtaa agcgggcatt ggggtgtgct accggcttgc cgctgttttt gtcgtaaggc
       61 ttaccatgcc agtcgatcag accttccggt acttccttgc tcatgccttc ccaccacacg
      121 tcgccatcag gggtaatgcc cacattggtg aaaatggtgt cgcgggcaat ggacgccatg
      181 gcattggggt tggtcttttc attggtgccg ggggctacgc caaaataacc ggcttcgggg
      241 ttgatggcat agagcttgcc gtcagcgccc ttgtgtatcc aggcaatgtc gtcgcccacc
      301 gtggtcactt tccagccttc caatccattc ggcggtatca tcatggcaaa gttggtcttg
      361 ccacaggcac tggggaaagc ggcggctaca taagtctttt ccttttcagg gctttcaacg
      421 cccaatatca gcatgtgttc tgccagccag ccttcttcgt ggcccattac actggcaata
      481 cgcagggcaa agcacttttt acccaacagg gcgttgccgc cataaccact gccatagctg
      541 atgatgagtc tttcctcggg gaaatggctg atgtatttaa cggtggggtt gcagggccac
      601 ttcacatcct gctggccggg atgcaacgga gcgcccacgg tatgaatgca ttttacccac
      661 tcgccgggct tcatgtggtc cagtacctgc gaacccatac gggtcatcat tttcatgttc
      721 accaccacat actcgctgtc ggttatttca acgccatagc ggctcaaggg tgagcccacg
      781 gggcccatgc aaaaaggaat gacgtacatg gtacggccca gcatggcgcc ggcagtcagc
      841 ccttccagga tgcctttcat ctccttggga tccatccagt tgttggtagg ccctgcctcg
      901 tctttgcggc ggctgcagat ataagtgcgg tcttctacgc gggccacatc actgggatcg
      961 ctgaagcagg cataactatt cggacgcttt tcaggattca gcttgatgaa agttcctttt
     1021 tctaccagct gtccgcaaag ctcgttgtac tcttcatcgg taccggtgca ccagtaaatg
     1081 ttgtcgggtt tcaggtgcga agccatggct tccacccact tctgtaattc cgcagcaata
     1141 ggttctgcct tgctgaagaa ataatcgttt tggtcaaaca tagtgtgtta tttatggtat
     1201 ctgaaaatca atgtgcatgc aatttgagca attcaaatcg caaaaaccat gagttgtatc
     1261 agctaatgtg tggaatgtac acaaactatc ctgtctaccg ggagaatgca ccggtcattc
     1321 gggctgcact accgtggcat tctgtggata attccggcac agccaccggc cctcaatcaa
     1381 gtaattttga aggcacaaac acaagcattt tcggggatga agtacaacgc gaccaccttg
     1441 caaaaactgg aaaggattct caccgaatcg aattacatct accggtacga gataggtact
     1501 tttcaaagcg gctactgcat cctggaacaa aaacgggtgg tggtgctcaa caagttcctg
     1561 agtgtggaag gacgcatcaa cacgctgatg gaactgattc cccagctcga tatcaataaa
     1621 gacatgctga cacaggaaag ccagaagact tatgaagaag tgatcaaggc tgcggccacg
     1681 accgcgtaag tggtaaataa tgacaccaaa aaaagacctt ccccggcggg aaggtctttt
     1741 tgtttggtgt tacattcgcc agacttccat ttgtcatgca agcactcacg atcacattct
     1801 taggaaccgg caccagcagt ggcgtaccca tggtagcctg cgattgtgaa gtgtgcagtt
     1861 cggaagagcc caaagacaaa cgcctgcgca gcagcattct cgtgcaatca ggcagcacta
     1921 ccattgtggt ggatgccaca cccgacttcc gacagcaaat gctgcagcac caggtgaaac
     1981 ggatagatgc catcctgctc acccatgccc acaaagacca tgtgggcggc ctcgacgata
     2041 cccgcgggta ccagttcttc caacagcaac ccaccagcat ctacggtaca gcgctggcgc
     2101 tggaaggtgt gcgccgcgaa gtgccctacg cctttgccga acacaaatac ccgggtgtgc
     2161 cggtgtatga actgcatgaa atagacgacc atcccttcgc cattggcgat atcgagatca
     2221 cgcccatcag ggtgatgcat tacaaaatgc cggtatcagg gtttcgcttc ggcaatttta
     2281 cctacatcac cgatgccaac tttattgcag aagaggaaaa gaacaaaata aggggctcgc
     2341 atacgctggt gctcaatgcc ctgcgaaagg aaaaacacct gtcacatttt acactgaatg
     2401 aagcggtagc actggcccag gagctgggtg tgaagcaagc ctattttacc cacatcagcc
     2461 accagctggg gctgcactac cagatcaacg aagaactgcc catgggcatt gaactggcct
     2521 acgatggctt gcaattaatg tgctgatgtg ttattttggg cgaaaacccc tgctcgcaca
     2581 tccatgccac gttatcaaca ccgtttccag cattggctca aagactattt cctgttcagc
     2641 aaatggcagc ggcgtgccat tttattgctg gtcctcatca ttgtgacctg ccttggcctg
     2701 caggcctggt ggaaacaacg cggcgcactg gcttttgagc aggcgccccc gctggtaatg
     2761 caagaggtgg aagcattggc agcctatgag cccgacagca accaggcaga ggaaacagct
     2821 tccgcctcct ggcgggaacc ggtagctacc aaccgcgagc cggcacagta tttcgctttt
     2881 gaccccaaca ccgcgacagc gcaggaattg ttgcagttgg gcatgccagc caaagcggtg
     2941 caggctttgc tgaagtaccg ggccaaaggc ggccgcctgc gccagccgga agacctgctg
     3001 aaaatttatt ccctgcccaa aaccacggcc accgctctcg ttccctgggt gcgcattgca
     3061 gccgtgcctg ataacaagac ctacacctat catcgcgatt cgtttgcgaa ccggccggca
     3121 aggcctgctc ctgcatctgt cgacatcaac acggcggata cgacagccct gattgccctg
     3181 cccggtatcg gcagcaggtt ggcggcacgc atcgtcaact ttcgcgacaa actgggtggt
     3241 ttttacagca tcaaccaggt ggctgaaacc tatgccttgc ccgacagcac ttttcaaaag
     3301 atcaggagcc ggctggtact cagcagcggc cc
//
LOCUS       DATIQF010000066         1660 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_107655,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000066 DATIQF010000000
VERSION     DATIQF010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1660)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1660)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1660
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107655"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..264
                     /locus_tag="VLL95_01015"
     CDS             <1..264
                     /locus_tag="VLL95_01015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37464.1"
                     /translation="RLYWGSTFRAITNSYRLQNGQYLRIDDNQISLYLDAYVAKHICL
                     TLEPVYGIMRKLRTGLEGKNYLTNRNWGDGPFIKLSASYRIRL"
     gene            complement(333..>1660)
                     /locus_tag="VLL95_01020"
     CDS             complement(333..>1660)
                     /locus_tag="VLL95_01020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37465.1"
                     /translation="PQKTDQRADILKNAKLYKYRLRFSSDQVLGGITNNLLLTRYQPF
                     AGGSGPIYMNNGNNLSWAFMATISDVLEDYRISGGFKPGINFSDNEYFVDFQNYRKRI
                     DWGLNFYHAANSNLQFYTETPDAYFSTKVLTNRYQVNVSYPFDRVRSVRLITSFRNDR
                     VVMRPSQFSTGSGIPNPYGLQRPDTNLRFVNFHFEYVHDNSLNKTQNIWHGVRWKVYM
                     ENIMQLNKSQIVAGKEAQRQFTFNFGADFRHYLPIYRNFIWAVRGATDVSWGNQKLIY
                     YLGGVDNWLSPKFNAENRPDPTQKYVYQSLALQMRGYRQNLANGNNNMVFNSELRLPL
                     FATFLNKPINNAFIRNFQLVQFIDLGTAWVGTFSGIARPGVRYASPDPNNPVVVNVKA
                     GGVGPFAGGYGFGARSTLLGYFIKVDAGWPMNGFFNNKPQWYFALGFDF"
BASE COUNT          394 a          398 c          447 g          421 t
ORIGIN      
        1 cgcctttact ggggatccac cttccgggcc atcaccaata gctaccgcct gcagaatggt
       61 cagtatttac gcatcgacga caaccagatt tcattgtacc tcgatgccta tgtggccaaa
      121 cacatttgcc tgacactgga acccgtctat ggcatcatgc gcaagctgcg cacagggctt
      181 gaaggcaaaa actacctgac caatcgcaac tggggcgatg ggccattcat caaattgagt
      241 gcctcgtatc gcatcaggct gtgagaagaa gggctacgaa aaaaaagctc atgctattgt
      301 tcagcatgag cttttcttat ttgtattaat gcttagaaat cgaagcccag ggcaaaatac
      361 cattgcggtt tgttgttgaa gaaaccattc attggccagc cggcatctac ttttatgaag
      421 tagcccaaca gggtagagcg ggcaccaaat ccgtaaccac cggcaaatgg acctacacca
      481 cccgccttca catttaccac cacagggttg ttgggatcgg gagatgcata gcgaacaccg
      541 gggcgggcaa tgccactgaa agtgcctacc catgccgtac ccaaatcaat gaactgcacc
      601 aactggaaat tgcggatgaa tgcattgttg atcggcttgt tgaggaaagt ggcaaacaaa
      661 ggcaggcgca attcgctgtt gaagaccatg ttgttgttgc cgttggccag gttctggcgg
      721 taaccgcgca tttgcagcgc caggctctgg tatacatatt tctgtgtagg atcggggcgg
      781 ttctccgcat tgaacttggg cgatagccag ttgtctaccc caccaaggta atagatgagt
      841 ttctggttgc cccagctgac atcggtggca ccacgtaccg cccaaatgaa attgcggtaa
      901 atagggaggt aatgcctgaa gtcggcacca aagttaaaag tgaattggcg ctgcgcttcc
      961 ttgccggcaa caatctgcga tttgttcaat tgcatgatgt tctccatgta cactttccag
     1021 cgtacaccgt gccagatgtt ctgcgttttg ttcagcgagt tgtcgtgcac atattcaaaa
     1081 tggaagttca cgaaccgcag gttggtgtca gggcgttgca agccataggg gttggggatg
     1141 cctgaacctg tgctgaactg gctgggccgc attaccaccc tgtcatttct gaaactggtg
     1201 atgagtcgta cactgcgtac cctgtcgaat ggatagctta cgtttacctg gtatcggttg
     1261 gtcaaaacct tggtgctgaa gtaggcatca ggtgtttcgg tgtaaaactg caaattgctg
     1321 ttggcggcat ggtagaaatt caagccccag tcgatgcgct tgcggtagtt ctgaaaatcg
     1381 acaaaatatt cgttgtcgct gaaattgatg cccggtttga atccgccgct gatgcggtag
     1441 tcttccaata catcgctgat ggtggccatg aaagcccagc tcaggttgtt gccgttgttc
     1501 atgtagatag ggccgctgcc accggcaaag ggttgatagc gggtgagcaa caggttgttg
     1561 gtgatgcctc ccagcacctg gtcgctgctg aaacgcagcc tgtatttgta cagcttggcg
     1621 tttttgagta tgtcggcgcg ttgatcggtt ttttggggac
//
LOCUS       DATIQF010000067         3399 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_183710,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000067 DATIQF010000000
VERSION     DATIQF010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3399
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183710"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..987)
                     /locus_tag="VLL95_01025"
     CDS             complement(<1..987)
                     /locus_tag="VLL95_01025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37466.1"
                     /translation="METAQLQIELFNQVKMRLPANISLVDSVASVLDLSVDSAYRRIR
                     GEKALDLHEAQLLCNHFNISLDAILGTLGSRIMFTSNHVSPAEYDFANYQAGVLKSLK
                     YFHSFEEKRLLYECKDIPLFHHYHSKELAAFKYFFWHKFLFRQEAFRHQQFRMAEYPD
                     ALYETGLQISHLYKTLPSAEFWNLESMSSTLRQIDFFYDTGGFERKEDAAMVYNSVKQ
                     LMLDIEKECADGMKHPVSNDKMAEIGGAYDVYINEVLLGANTILAVLGSSRMVFLNHS
                     VFNYAVTSDLEFGLHIENYLKNLANSSTQISRVSEMERKAFFRSVYKLVDERI"
     gene            complement(995..1999)
                     /locus_tag="VLL95_01030"
     CDS             complement(995..1999)
                     /locus_tag="VLL95_01030"
                     /inference="COORDINATES: protein motif:HMM:NF020251.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSR37467.1"
                     /translation="MNPVNDTPQKRLFHYLKGIIPKDKSLADCLTEWLHVSSDSAYRR
                     IRGETPLTVDELMVIAEATGMSANELLGMTSQNAVLFEPTQAGISSPDLHSYLKHIQH
                     HLQILDAFDEKEMIYCSKDLPIFHFFLYPELMAFKYHFWMQIILQREDFENKMFSLEQ
                     PDPADLQLMKNIAALYAGLPSIEIWNTESVNSTLFQIEYYRTAGYIENSAVIKTLYEQ
                     LQELVAFVSKQAEMATKFLPGQNPEMKPKNFQLFYNQVCLADNTMLATTSSGTVSVIN
                     YGILNYLTCYDQDFCATVAKDIENIMKRSTKLSEGNVRHRTMFFNAINEKINRYKKLI
                     "
     gene            complement(2008..2751)
                     /locus_tag="VLL95_01035"
     CDS             complement(2008..2751)
                     /locus_tag="VLL95_01035"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSR37468.1"
                     /translation="MIRALIIDDEQHCIDSLKHDLQHYCPQVEIVAEATSAKDGLLAI
                     RHHDPQLVFLDVQMPWMTGLEMLELLPSIRFALIFTTAYDQFAAQAFRKSAIDYLLKP
                     IAAQDLVEAVTKASEKLNAQTSAAHVDNLLANIKQPDRQRIAFPFREGYEFIAPDEIT
                     CLLAEGAYTKVHLQDGRMLLISKSLGDLGELLPAEEFVRVHHSSIVRTANITHFLRTD
                     GGYVQLTNGMKLMVSKSKKDNLMEKLGLK"
     gene            complement(2755..>3399)
                     /locus_tag="VLL95_01040"
     CDS             complement(2755..>3399)
                     /locus_tag="VLL95_01040"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSR37469.1"
                     /translation="KAQMMELHDKALRAQMNPHFLFNSLNSIKQLVQENKNQEALNYL
                     GTFTKLMRGVLQHADRPFISLHEELETCRHYVELEALRFGKGFQYRFDVDASLDLKSV
                     EVPCLIIQPIIENAIWHGLMPKESDRHLAVNVWQQEESIRVEVVDNGIGRQAAANKHP
                     NPNGHLSKGMSLTTARIDTYRIMKDSDADISYEDLKDEKGNAKGTRVLLTFQLT"
BASE COUNT          762 a          834 c          824 g          979 t
ORIGIN      
        1 aatccgctca tcgaccagtt tgtacacgct tctgaaaaat gcctttcttt ccatttcgct
       61 cacccggctt atttgggtag aactgttggc gaggttcttg agatagtttt cgatgtgcaa
      121 tccaaattcg agatcgctgg tgacggcata attgaaaacg ctgtggttca gaaaaaccat
      181 tcggctgctg cccagcactg ccaggatggt attggcgccg agcaatactt cgttgatgta
      241 tacgtcataa gcaccgccta tctccgccat cttatcgttg ctaacagggt gcttcatacc
      301 gtcggcacat tccttttcta tatccagcat cagttgcttc acgctgttgt acaccatggc
      361 ggcatcttcc tttcgttcaa agcctcctgt atcgtaaaaa aaatcgatct gccgcagcgt
      421 gctgctcatg ctttcgaggt tccagaattc ggcggagggc agggttttgt acaagtgtga
      481 tatctgcaga cctgtttcat acaatgcatc cgggtattca gccatcctga attgctggtg
      541 ccgaaacgct tcctgccgga acaggaactt gtgccagaag aaatatttga atgctgccaa
      601 ttctttggaa tggtagtgat gaaacagcgg aatgtctttg cactcataca gcagccgttt
      661 ctcctcaaag gagtggaagt acttgagact tttcaaaacg ccggcctggt agttggcaaa
      721 atcatattca gccggcgaca catgattgct ggtaaacatg atccggctgc ccagggtacc
      781 caaaatggca tccagcgaaa tattgaagtg attgcacaac aactgggctt catgcaggtc
      841 cagcgctttt tcaccgcgta ttcttcggta tgcactgtca acactcaggt cgagcaccga
      901 tgccacactg tccaccaacg aaatattggc aggcaagcgc atcttcacct ggttgaacaa
      961 ttcgatttgt agctgtgctg tttccatacg atcatcagat tagttttttg taccggttta
     1021 ttttttcgtt gatggcattg aagaacatgg tcctgtgccg cacgtttcct tcgctcagtt
     1081 tggtggatcg cttcatgatg ttttcaatgt ccttcgccac cgtggcgcag aaatcctggt
     1141 cgtaacaagt caggtaattc aggatgccat agttaatcac gcttacggta cccgaagaag
     1201 tggtggccag catggtattg tcggcgaggc aaacctggtt gtaaaaaagc tggaaattct
     1261 ttggtttcat ttccgggttc tggccgggca ggaatttcgt agccatctcc gcctgcttgc
     1321 ttacaaatgc caccagttcc tgcagttgtt catagagtgt tttgatcaca gcactattct
     1381 ctatgtagcc agccgtgcga taatattcaa tctggaacaa agtactgttc acgctttcgg
     1441 tgttccatat ttcaatgctg ggcaacccgg catagagtgc tgctatgttc ttcatcaatt
     1501 gcagatcagc cggatcaggt tgttccaggg agaacatttt gttttcaaaa tcttcccgct
     1561 gcaaaatgat ttgcatccag aagtgatact tgaatgccat cagttcgggg tacagaaaga
     1621 aatgaaagat gggcagatcc ttgctgcagt aaatcatttc tttttcgtcg aatgcatcca
     1681 ggatctggag gtgatgctgg atgtgtttca aataactgtg caggtcgggc gatgaaatac
     1741 ccgcttgggt aggttcaaac aaaacggcat tttgagaagt catacccagt agctcattgg
     1801 cgctcatgcc tgtggcttcg gcaatcacca tcagttcatc cacggtaagt ggtgtttcgc
     1861 cccggatgcg ccggtaagcg ctgtcgctgc ttacatgcag ccattccgtg aggcagtccg
     1921 ccaggctctt gtccttgggg atgatccctt tgagataatg gaagagtctt ttctgcggcg
     1981 tgtcgtttac agggttcatg gtaccattta tttcagtccg agtttttcca tcaggttgtc
     2041 tttcttcgat ttgctcacca tcagcttcat gccgtttgtc agttgcacat agccaccgtc
     2101 ggtgcgcaaa aaatgtgtga tgttggcggt gcgcacaatg ctggaatgat gcacccgtac
     2161 aaattcttct gccggcaata actcacccag gtcacccagg cttttcgaga tcaaaagcat
     2221 tctgccatcc tgcagatgca ctttggtgta ggcaccttcc gccagcaggc aagtgatctc
     2281 atccggtgct atgaattcat agccttcgcg aaacgggaag gcgatgcgct ggcggtctgg
     2341 ctgtttgatg ttggcaagca gattgtcaac atgggcagcg ctggtttgtg cattcagttt
     2401 ctcactggct tttgttacgg cttctaccag gtcctgtgcc gcaatgggtt ttaataaata
     2461 gtcaatggcg cttttccgaa aggcctgtgc ggcaaactgg tcgtatgctg ttgtgaaaat
     2521 gagggcaaac cggatggaag ggagcagctc cagcatttcc aaacccgtca tccatggcat
     2581 ctgtacatcc aggaacacca gctgcggatc atgatgcctg atggccagta aaccatcttt
     2641 ggcagaggta gcctcggcca ctatttctac ctgcgggcaa taatgctgca ggtcgtgctt
     2701 cagcgaatcg atgcaatgtt gttcgtcgtc tattatcaat gctctgatca ttgttcaagt
     2761 caattgaaaa gtgagcaata ccctggtgcc tttcgcattt cctttttcat ctttcaggtc
     2821 ttcataggaa atgtcggcat cactgtcttt cattatgcgg tatgtgtcaa ttcttgctgt
     2881 ggtcaggctc atgcctttcg acaggtgccc gttgggattg ggatgcttgt tggccgccgc
     2941 ctgtctgcct attccattgt ccaccacttc cacccgtatt gattcctcct gctgccacac
     3001 atttacagcc aggtgccgat cactctcttt aggcatcaat ccgtgccaga tcgcgttctc
     3061 aatgatcggt tgtatgatca ggcagggcac ttccaccgat ttgagatcca gtgaagcatc
     3121 cacatcaaaa cgatattgaa atccttttcc aaaacgaagc gcttccagtt ccacatagtg
     3181 gcggcaggtt tccaattctt catgcaggct gatgaatggc cggtcggcat gctgcaacac
     3241 cccccgcatc agcttggtaa aggtgcccag gtagttgagc gcttcctggt tcttgttttc
     3301 ctgcaccagt tgtttgatgc tgttcaggct gttgaaaagg aaatgaggat tcatttgggc
     3361 cctcaatgcc ttgtcgtgca gctccatcat ttgtgcctt
//
LOCUS       DATIQF010000068         1609 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_92422, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000068 DATIQF010000000
VERSION     DATIQF010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92422"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..920
                     /locus_tag="VLL95_01045"
     CDS             <1..920
                     /locus_tag="VLL95_01045"
                     /inference="COORDINATES: protein motif:HMM:NF025420.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4249 domain-containing protein"
                     /protein_id="HSR37470.1"
                     /translation="ITIHTSMFRAFRHKSLFFGMVAAMLLTACEKEIDVVPSDLEPVL
                     VVEGTIENDQFPRVILTRSVGFFDTLSLDALANSFVRNATVTISDGSRTVPLKEYGVQ
                     FGPSKFFFYTIDTANPAIQMRGELGKKYMLSITASGKNYSAVTQLPTIARRIDSLWWR
                     PAPGSADTNRVVVFSRITDPPGFGNFTRYFTSVNDSSFLPGLNSVSDDQFFDGTTFDV
                     QIPRGVNRNVPINNETFGFFNRGEKVKVKLSNIDKATFDFWRTWEQNQSNTGNPFGVP
                     IRVLSNISNGAAVYFGGYGSQVMEITIPK"
     gene            1023..>1609
                     /locus_tag="VLL95_01050"
     CDS             1023..>1609
                     /locus_tag="VLL95_01050"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSR37471.1"
                     /translation="MDIREHVHCLIIGSGPAGYTAAIYAARAGLNPVLYQGIQPGGQL
                     TITTEVENYPGYPEGIQGPEMMVHFEKQASRMGADIRYGIVTKVDFAERPFKVQVDEE
                     FWLSADAVIISTGASAKWLGLPSEERLNGHGVSACAVCDGFFFRGKEVAIVGAGDTAC
                     EEALYLSKICSKVHMIVRKGEDGMRASKVMQDRVK"
BASE COUNT          398 a          386 c          434 g          391 t
ORIGIN      
        1 caatcactat tcacacaagt atgttcaggg ctttcaggca taaaagtttg ttttttggaa
       61 tggtggcagc aatgctgttg actgcttgcg aaaaggaaat cgatgtggta ccctccgact
      121 tggagccggt gctggtggta gaaggcacca ttgaaaacga tcagttccca agggtgatcc
      181 tcacccgttc cgttggtttt tttgataccc tcagcctgga tgcgcttgcc aattcatttg
      241 taagaaatgc gacagtaacc atcagcgatg gaagccgcac agtgccattg aaggaatacg
      301 gtgtccagtt tggcccctcc aaattctttt tctataccat agataccgcc aatcctgcca
      361 ttcaaatgcg gggtgaactg ggcaagaagt atatgctcag tattacagct tcgggcaaga
      421 attacagcgc agtaactcaa ctgcctacga ttgcccgtcg catcgactcg ctctggtggc
      481 ggccggcccc tggcagcgcc gacaccaaca gggtggtggt gttttcaagg attacagacc
      541 cgccgggctt tggcaatttc acccgctatt ttaccagtgt gaatgattcc agttttttgc
      601 ccggcctcaa ttcggtttcg gacgaccagt tttttgatgg caccactttc gatgttcaga
      661 tcccgagagg agtcaaccgg aatgtgccca tcaacaatga aacttttggt tttttcaacc
      721 ggggcgaaaa agtaaaagtg aagctgagca acatagacaa ggccaccttc gatttttggc
      781 gcacctggga gcaaaaccag tcaaacacgg gcaatccatt tggtgtgccc ataagggtgc
      841 tcagcaatat cagcaacgga gcagcggttt attttggcgg gtatggctcg caggtaatgg
      901 aaataaccat ccccaagtag tgcacactgg ctgcccaatt gtccccacgg tgcttttggt
      961 tactgatgaa tggggcacaa tcatcacctt tgccgtcaat cttttcaaga aacgatagac
     1021 ttatggatat cagagaacat gtacactgtt tgatcatcgg cagcggacct gcagggtata
     1081 cggctgccat ttatgcggct cgtgccggtc tcaaccctgt tttgtaccag ggcattcagc
     1141 cgggcggaca gcttaccatt actactgaag tggagaatta tccaggctac cccgaaggca
     1201 tacaggggcc ggaaatgatg gtgcattttg aaaagcaggc aagccggatg ggcgctgata
     1261 tcaggtatgg tatcgtcacc aaggttgact ttgcggaacg tccctttaaa gtgcaggttg
     1321 acgaagaatt ttggctgagc gccgatgcgg tgatcatctc caccggtgcc tctgccaagt
     1381 ggctcggctt gcccagcgaa gaaagattga atggccatgg cgtaagcgcc tgcgctgtat
     1441 gtgatggatt cttcttccgc ggaaaagaag tggccatagt aggggccggc gacacggcct
     1501 gtgaagaagc cttgtacctg agcaagattt gcagcaaggt gcacatgata gtgcgcaaag
     1561 gcgaagacgg catgcgtgct tccaaagtga tgcaggaccg ggtgaagaa
//
LOCUS       DATIQF010000069         3692 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_46937, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000069 DATIQF010000000
VERSION     DATIQF010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3692
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46937"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..286
                     /locus_tag="VLL95_01055"
     CDS             <1..286
                     /locus_tag="VLL95_01055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37472.1"
                     /translation="VWLSQVVYKEAKQNGKTTMATIESGDMKNIDYTLVGTEKMDLQL
                     NGENISLPCLHLRSTDGRDFEYWVWDNPKDPLILKMSIGWGIAIKEINVN"
     gene            459..866
                     /locus_tag="VLL95_01060"
     CDS             459..866
                     /locus_tag="VLL95_01060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37473.1"
                     /translation="MKQYHIVSRFAIYALAVVLILLGIYHILNPRNLFIYVPPTWLGN
                     IVWAYIVGGAFVLVGISFITNQFVKFTGYVLAVLLLFFVFAIHLPNYLNAGDLEMRQL
                     AYVSLLKDTAIACFALHIAAGAHHQHFHLEESD"
     gene            complement(1001..1651)
                     /locus_tag="VLL95_01065"
     CDS             complement(1001..1651)
                     /locus_tag="VLL95_01065"
                     /inference="COORDINATES: protein motif:HMM:NF022441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head GIN domain-containing protein"
                     /protein_id="HSR37474.1"
                     /translation="MKYLFTLLAFSWLATHTLAQKTVYDDKAVKREVGRFHAIEVSTG
                     IEVLITEGNEEALAVSAPDQKWLDRLKTEVSGGVLRIYLENTWDWNVPKNWKFTVYVS
                     YTQLDELKASSGASIKGDVKLASLKAKQSSGGFVMLKGEVDKLTVNASSGGFFRGYEL
                     STNYLVADVSSGGGVQVTVNKEVEAEASSGGYVSYKGNAVIRGINVNSGGSVKKVN"
     gene            1774..2889
                     /locus_tag="VLL95_01070"
     CDS             1774..2889
                     /locus_tag="VLL95_01070"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HSR37475.1"
                     /translation="MGLKEDLNDVRKQLKTNASQLDIDHLRKIEGWIKACGILGIGTA
                     WIFPNPVSILLLSQYKFGSWTMLAHHILHKGYDTIPGVPHRYTSKGFARGFRRYLDWL
                     DWIWPTAWVHEHNHLHHAHLGETADPDLVERNIDWLRKKTWHPYLKMGLVVVMALTWK
                     FVYYAGNTLRTWLERRYPEKNIPSYGSLAFWNPFSFAGSHLWLHCLLPYVMVNFIALP
                     ALFLFISTKAAIFVLINLLLAEMITNLHSFAVIVTNHTGDDIYRYDTSINSKEEFYFR
                     QIAGSVNYPTGSDFNDFMHGFLNYQIEHHLWPDLTMLQYKKAQPMVQAIAEQYGIPYT
                     QQSVPKRVMKTVQIMCGLKDMPVYQQAPLSNAAVQTT"
     gene            complement(2901..>3692)
                     /locus_tag="VLL95_01075"
     CDS             complement(2901..>3692)
                     /locus_tag="VLL95_01075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37476.1"
                     /translation="SDHYWKSPFDIEMNTGVINLFWSAVSFLKFAKLRKQQWGVEYHD
                     YYRKYPQGILGAQLSLRRDPVSFQNLRYQGLTPYMFIGKDGIKRYAKYRAMPLDKAPE
                     TGITPNMSDWDTCNQRILPNETRGRNYLKDEYKDRVARGDAKYLMQIQLRTANDDDDP
                     EIFNNQIPWDDKLFPWHDLAVVDINEILSWKESVLTSFSLNHMPKTLGIIPAKSIYDY
                     NSLNYMRSHSEIARKARIFSYKVFGIPPEIPDDDNRNVSDWSGKQ"
BASE COUNT          932 a          918 c          845 g          997 t
ORIGIN      
        1 agtttggctg agccaggtgg tttataaaga agcaaagcaa aatgggaaaa ccaccatggc
       61 tacaatagaa tcaggcgaca tgaaaaacat cgactataca ctggttggta ccgaaaaaat
      121 ggatttgcag ttgaatggcg agaacatcag ccttccgtgc ctgcacctca ggtcaaccga
      181 tggccgcgac tttgaatact gggtttggga caaccccaaa gatccgctca ttctaaagat
      241 gagcattggc tggggaatcg ccattaagga gattaacgtg aattgacttt gccggaacac
      301 cgggaagaat tgagccgccc attggcggct tttttattgt ttgccggcct ggaatgccct
      361 tttccacaat aaaatatgcc catcaaatag tcataaactg ctatttgtca tttttgcccc
      421 tgttgggaat ggttagattt ggatcaaaag cgttgcatat gaaacagtat cacattgtat
      481 ccaggtttgc catttatgca ttggcagtag tactcatact gctggggatt tatcacatcc
      541 tcaatccccg taacctgttc atttatgtcc ctcccacctg gttgggcaac attgtttggg
      601 cttacatagt aggcggtgca tttgtgttgg ttggcatttc tttcatcacc aaccaatttg
      661 tgaagtttac cggatacgtg ctggcagtac tgctgctgtt ttttgttttt gccattcacc
      721 tgcccaatta tctcaatgcc ggtgatcttg aaatgaggca gttggcttat gtgagcttgt
      781 tgaaagatac cgctattgca tgctttgcct tgcacattgc tgcaggcgcc caccatcagc
      841 atttccacct cgaagaaagc gattgatttt tcgtcaccgc aaaatgctgc tgcttcattc
      901 aacatccgga aaacaggatg ctgatactgt cataccctaa taattcaaaa gcctgtcggt
      961 gaatgaccga caggcttttg gttatcagga aggcgagctg tcaatttact ttttttacag
     1021 aaccgccgct gtttacgttg atgcccctga tcactgcatt gcctttgtaa gaaacataac
     1081 caccgctgct ggcttcggct tccacttctt tgtttactgt tacctgaacg ccaccaccgc
     1141 tgcttacatc tgccaccagg tagttggtgc tgagttcata gccacgaaag aaacctccgc
     1201 tgctggcatt tacggtcagt ttgtccactt cgcctttcag catcacaaat ccgccgcttg
     1261 attgcttggc cttaagcgat gccagtttta catccccttt aattgaggcc ccgctgctgg
     1321 ctttcagttc atccagttgg gtataggata catacacggt gaatttccag tttttgggca
     1381 cattccagtc ccaggtattt tccaaataaa tacgcaacac gcctcccgaa acttcagttt
     1441 tcagtcggtc gagccatttt tgatcgggtg cactcacagc gagggcttct tcatttcctt
     1501 cagtaataag cacttcaatg ccagtggaaa cttcaatagc atggaaacgg cccacttccc
     1561 gctttactgc tttgtcatca taaactgttt tttgggctaa tgtgtgcgtg gccaaccatg
     1621 aaaaggccag cagagtgaat aggtatttca taagcgaatt ttgacttgga acgatttcca
     1681 gtcagaaagg ttacaaggta tcgaggaaat ttttgggaac attggaccaa ccgcgaagtc
     1741 cgcttacatt cgggcctgcc ccaaagcaat atcatgggat tgaaagagga cctgaacgat
     1801 gtcagaaaac agctgaaaac caatgccagc cagctcgata ttgaccatct ccgcaaaatt
     1861 gaaggctgga taaaagcctg tggcatttta gggataggta ccgcctggat ttttcccaac
     1921 cccgtgtcga tactgttgct cagccaatac aagtttggat cgtggaccat gctggcccac
     1981 cacatactgc acaaaggcta cgataccata cccggtgtgc cacacaggta taccagcaaa
     2041 gggtttgcca ggggcttccg gcgatacctc gactggctgg actggatatg gcctactgcc
     2101 tgggtgcacg aacacaacca cttgcaccac gcccacctgg gcgaaacagc cgaccccgac
     2161 ctggtggaac gaaacataga ttggctgcga aagaaaacct ggcatcccta cctgaaaatg
     2221 ggattggtag tagtgatggc tctcacgtgg aagtttgttt attatgcagg gaacacacta
     2281 cgcacctggc ttgaaaggcg gtatcctgaa aaaaacattc cttcttatgg aagccttgct
     2341 ttctggaatc cattcagctt tgcgggctct catttgtggc ttcattgcct gttgccatat
     2401 gtgatggtca atttcatcgc cctgcctgcc ctctttcttt tcatttccac caaagccgcc
     2461 attttcgtgc ttatcaattt gctgctggca gaaatgatca ccaacctgca cagttttgcc
     2521 gtgatcgtca ccaatcatac cggcgacgat atttaccgat acgatacctc catcaatagc
     2581 aaagaagaat tttacttccg gcagatcgcc ggttcagtca actatccaac cggtagcgat
     2641 ttcaatgatt tcatgcatgg ctttctcaac taccagatcg agcatcacct gtggcctgat
     2701 ctaaccatgc tgcaatacaa gaaagcgcag cccatggtgc aggcaatcgc cgaacaatac
     2761 ggaatacctt acacgcaaca gtcagtaccc aagcgggtga tgaaaacagt acagatcatg
     2821 tgcggtctca aggacatgcc ggtgtaccag caagcaccct taagcaatgc ggcagtgcag
     2881 acaacctgac aatggacctc ctattgtttc cccgaccagt ccgacacatt gcggttgtca
     2941 tcgtcaggta tttccggagg aatgccaaat actttgtacg aaaagatgcg ggctttcctg
     3001 gcgatttccg aatgcgaacg catgtagttc agtgaattgt aatcgtaaat ggatttcgcc
     3061 ggaatgatgc ccagggtttt cggcatgtga ttgagcgaaa agcttgtcaa cacagactct
     3121 ttccacgaaa ggatctcatt gatatctacc acggcgaggt cgtgccaggg aaacaactta
     3181 tcatcccagg ggatctggtt gttgaagatc tccggatcgt cgtcatcatt ggcggtgcgc
     3241 agttgaattt gcatcaggta tttggcatcg ccacgagcca cccggtcttt gtactcatct
     3301 ttcaggtaat tgcgtcccct cgtttcgttt ggcaaaatcc tctgattgca agtatcccaa
     3361 tcgctcatgt tgggtgtgat gcctgtttca ggcgctttgt ccagcggcat ggccctgtac
     3421 tttgcatatc gtttgatgcc atccttgcca atgaacatat aaggagtaag cccctggtag
     3481 cgcaggtttt gaaaggaaac aggatcgcga cgcagggaga gttgcgcacc gaggatgccc
     3541 tgtgggtatt tgcgataata gtcatgatac tccactcccc attgctgttt gcgcagtttg
     3601 gcaaacttca gaaaactgac cgcggaccag aataagttga tcactccggt attcatttca
     3661 atatcaaaag gactcttcca ataatgatcc ga
//
LOCUS       DATIQF010000070         3744 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_259739,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000070 DATIQF010000000
VERSION     DATIQF010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3744
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259739"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1136
                     /locus_tag="VLL95_01080"
     CDS             <1..1136
                     /locus_tag="VLL95_01080"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR37477.1"
                     /translation="SALKYYKLFKSYADSINNQQTEKRAMNLAAEYEYSKKELLLKAE
                     FDSKNTRQNWIIFSAFAALISSLVVAGLIYRSRMKEKRSNQLLQQKNEEIDGQRNSLE
                     KALTELKAAQNQLIQAEKMASLGEMTAGIAHEIQNPLNFVNNFSEVSVELVQELGTAL
                     QQGDNEEANALITDLTQNLDKINHHGKRAGAIVRSMLQHSRSNSDGKEPTDINALCDE
                     YLRLAYHGLRAKDKTFNAIFETQLDPTVGKLNIIPQEIGRVLLNLINNAFYAVSQRQK
                     ALAADENAAAGEKYVPSVWVQTRNLDKQVEIRITDNGTGIPSHLADKVFQPFFTTKPT
                     GEGTGLGLSLSYDIVTNGHQGQLQLESKEQNGTTFIILLPKNA"
     gene            1138..1515
                     /locus_tag="VLL95_01085"
     CDS             1138..1515
                     /locus_tag="VLL95_01085"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR37478.1"
                     /translation="MKILVVDDERDVQMLFEQRFRKEMRSGEMEFAFAFSGEDALQYM
                     QVHHHEAVLILSDINMPGMSGLELLKQIKDHYEKPPPVVMMITAYGDSENYDRAMQLG
                     ADDFLTKPVDFLELKEKLKQRVL"
     gene            1512..2543
                     /locus_tag="VLL95_01090"
                     /pseudo
     CDS             1512..2543
                     /locus_tag="VLL95_01090"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
     gene            2629..3561
                     /locus_tag="VLL95_01095"
     CDS             2629..3561
                     /locus_tag="VLL95_01095"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HSR37479.1"
                     /translation="MMHTILGAGGAIAVELAKSLPHHQKKVRLVSRHPKAVAGSEELL
                     VADLLNAAEVDKAVEGSEVVYLVAGLPYNYKVWQVQWPLIMQNVINACRKSKSKLVFF
                     DNVYAYGKVDGWMTEQTPYNAISKKGQVRKRIAEMLMHEVEMGHLDALIDRAPDFYGP
                     HCNTSFLNMVVMARHLKGQKAQWMANAKVPHSFIFTPDAGKATALLGNTDSAFNQVWH
                     LPTARPALTGEEWAEMSAAATGAPNGVQVLPLFMIRLLGLFIGPLRESVELIYQNDSP
                     YLFDSTRFEKTFSFNHMPYADSLKATLEAMRAAK"
BASE COUNT         1082 a          823 c          988 g          851 t
ORIGIN      
        1 catcggcatt gaaatattac aagctgttca aaagctatgc cgacagtatc aacaaccagc
       61 agactgaaaa aagggccatg aacctggccg ctgaatacga gtattctaaa aaggaactgt
      121 tgctcaaggc ggaattcgac agcaagaata cccgccagaa ctggatcatt ttttccgctt
      181 tcgcggcttt gatttcatca ttggtggtgg caggacttat ctatcgaagc cgcatgaaag
      241 agaaacgttc caaccagttg ctgcaacaga aaaacgagga gattgatggg cagcgaaaca
      301 gtcttgaaaa ggcattgacc gaattgaagg cggcgcaaaa ccagttgata caggctgaaa
      361 aaatggccag cctgggtgaa atgacggccg gcatagccca cgaaatacaa aacccgctga
      421 atttcgtcaa caacttttcg gaagtgagtg tggaattggt gcaggaattg ggaacggccc
      481 tgcagcaagg cgataacgaa gaagccaatg cattgattac tgaccttacc cagaacctgg
      541 ataagatcaa ccaccacggg aaaagggcag gcgccattgt gcgcagcatg ctgcaacact
      601 cccgaagcaa cagcgatgga aaggaaccta ccgatatcaa tgcgctttgc gatgaatacc
      661 tgcggctggc ttatcacggg ttgcgggcga aagacaaaac ctttaacgcc attttcgaaa
      721 cccagctgga tcccacggtg ggcaagctga atatcattcc ccaggaaata gggcgggtgt
      781 tgctcaacct catcaacaat gcattttacg ccgtgtcgca aaggcaaaag gcattggcag
      841 ccgatgaaaa tgccgcggcc ggcgaaaagt atgtgccttc tgtttgggtg caaaccagga
      901 accttgacaa gcaggtagag atcaggatca ctgacaacgg caccggcatt ccttcgcatt
      961 tagcggacaa agtgttccag cctttcttta ccaccaagcc aacgggagaa ggcactggcc
     1021 tggggttgag cctgagttac gatattgtta ccaacgggca ccaggggcaa ttgcagctgg
     1081 aatcaaaaga acaaaacgga accactttta tcatactctt acccaaaaac gcttaaaatg
     1141 aaaattttag tagtagacga cgaaagagat gtgcaaatgc tgtttgagca gcgcttcaga
     1201 aaagaaatgc gcagtggcga aatggaattc gcgtttgcct tttccggcga agatgcgctg
     1261 caatacatgc aggtacatca tcatgaggcc gtactcatac tgagcgatat caatatgccc
     1321 ggcatgagcg gtttggaact gctgaaacag ataaaagatc attatgaaaa gccacccccg
     1381 gtggtgatga tgatcactgc ttacggcgat tcagaaaatt atgatcgtgc catgcaattg
     1441 ggggccgatg attttctgac aaagccggtt gatttccttg aattgaaaga aaaactgaaa
     1501 cagagggtgt tatgactaag attttggtag cggatgatga gaccgacctg gaagtactca
     1561 tcaggcagaa gttcaggcaa aagatccgtg agcagcaata cgatttcgtg tttgccatca
     1621 acggtgttga cgcgttggag aagatcaggc aaaaccctga tatcgccatt gtgttgagcg
     1681 acatcaacat gccggaaatg gatggcttga ccttgttgtc gaaattgggt gaggcggcac
     1741 cgctttcgaa ggcggttatc gtatcggcat atggcgatat ggacaatatc aggaccgcca
     1801 tgaaccgggg ggcatttgat tttgtgacga agccggtaaa tttcgaagac ctggaaataa
     1861 cgatggagaa gaccattcgc tacgtaaacc agatgaagga aacgctgcag gccatcaagg
     1921 aaaacaacat tttgaaaatg tatgtggatg ccaatgtgct cagctatatg gaatccaggg
     1981 aatacaccga ttcgcttaca gagaatgata cccttgaagc caccgttgca tttattgata
     2041 tctgcgattt tacagccatc agcgaaaagg aaacgccgga tgtggtagtg aaaatgctta
     2101 atgattattt tgatgtgatg gtaaaagaga tcattactca aaacgggatc atagacaaat
     2161 tcatgggcga ttgtgtaatg gcagttttca aaggcgatta tcatttggat cgtgccattg
     2221 acgccgcttt ggccattcgt aagaaaatag acacactgcc atcgagctac aattttgtgc
     2281 ccaaagtggc cattggtatc aacagtggcg aaatgatatc aggcaatatt tgatctgttg
     2341 cgctgcgccg ccttgattat actgtgattg gcgacactgt gaataccgcc cagcgtctgc
     2401 agggcgtagc aggcagcagc cagatcgtca ttaccgctga ggcatacgaa aaggtgaaga
     2461 tgtcattcca atgccgcgaa ttaggacggc ataagcttaa gaacaaggaa gccgaggtaa
     2521 tgctctacga agtgatcgat tgaatcccga tcgcgtttca aaaggtgatg gccgtcattg
     2581 gatgcgggtg cggtgtggga taatttgctt cccaaacacg caacggctat gatgcataca
     2641 atactgggtg ccggcggcgc catcgcagtg gaattagcca agagtttacc tcaccatcag
     2701 aaaaaagtca ggctggtgtc acgccatccc aaagccgtgg ctggcagcga agaattgtta
     2761 gtggccgatt tgctgaatgc tgccgaggta gacaaagcgg tggaaggcag cgaggtggtt
     2821 tacctggtgg ctggattgcc ctacaactac aaagtgtggc aggtgcagtg gccgcttatc
     2881 atgcaaaatg tgatcaatgc ctgccggaaa agcaagtcga agcttgtgtt ttttgataac
     2941 gtgtatgcct atggaaaggt ggatggctgg atgacagaac aaacacctta taacgcgatc
     3001 agcaaaaagg gacaggtgag gaagcgcatt gctgaaatgc tgatgcacga agtggaaatg
     3061 ggacacctgg atgcactgat tgaccgggct cctgatttct acggcccaca ttgcaacacc
     3121 agttttttga atatggtggt gatggcccgc catttgaaag ggcagaaggc acaatggatg
     3181 gccaacgcca aagtgccaca ttcattcatc ttcacccccg atgcaggcaa agccacagcc
     3241 ctgctcggca atacggatag tgcattcaac caggtgtggc atttgcccac tgccaggcca
     3301 gcgctaacgg gcgaagagtg ggccgaaatg agcgctgccg ctacgggagc gccgaatggc
     3361 gtgcaggtgc ttccgctgtt catgatccgg ttgctgggat tgtttattgg cccgctccgg
     3421 gaaagtgtgg agctgatcta tcaaaacgac agcccttatt tgtttgacag taccaggttt
     3481 gaaaagactt tttccttcaa ccacatgcca tatgcggata gcctgaaagc cactttggag
     3541 gcgatgcgag ccgccaaata atcctgcatt tcgatattga aaatgcttgt cggtagcaaa
     3601 ctacttgaca ataccagaac ttccatttac atttgtgata tcaaagtgat atcaaaacaa
     3661 atattatgga aaaactcaca aagccagcat ccggctggtg gtttctgttg ctaggcttcc
     3721 tcatgattgt gttggcggta atca
//
LOCUS       DATIQF010000071         3297 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_62023, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000071 DATIQF010000000
VERSION     DATIQF010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3297
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62023"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1300)
                     /locus_tag="VLL95_01100"
     CDS             complement(<1..1300)
                     /locus_tag="VLL95_01100"
                     /inference="COORDINATES: protein motif:HMM:NF039901.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="contractile injection system tape measure
                     protein"
                     /protein_id="HSR37480.1"
                     /translation="MTTGQQHRIHRAQVDISSPTWLDSQATQHWVQGKLLEILDEVMS
                     EWSDEHVAQVLDHLHIECHVHSMQAMNEESTRQQIRRQVEQALSHAASDGALHKGRQT
                     APSLAMNDLLMYLGSGSIPEKQTIEKWRQSLITPDALSAMNAENGYALLKMLQFPNAW
                     QRFRHLIADTQRFDEVVLSLLASHSYHLSNWLSWFEQANSNASFSSDAERHHVLHCLI
                     KSCFIPSTDVSNYLQETLGTLGFGTPEQTSYTTEDWKSKKQMTEAAFKESLTEVKGKD
                     PTLAESLIAPTLNKNEQVYAANAGAILVAPFLPRFFQQLQIDPAQHEEAAQQASLLVH
                     YLATVNTHAFDWELALPKLLCAVPFETVIDSNTGIPGEWKEEADHLLSAVISHWSKLG
                     NTSVAALRQSFLQRDGQLELKESRITLKIPERTEDILLQFI"
     gene            complement(1300..>3297)
                     /locus_tag="VLL95_01105"
     CDS             complement(1300..>3297)
                     /locus_tag="VLL95_01105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37481.1"
                     /translation="AATVGLQFDEWYPTVKNAGYIPPAQMLQAFSVNFGAGKFISPVA
                     LMYYLEKIHEALPAGIVQVNMIELSIRLRDAVLVAEAILKAIKAFASNTDNKQFDDPE
                     LYLQLNAVIRICKGTLLLELYRNFLFRFFLYLSNQSFAMYSFLNSGIQHKAGVPVGGT
                     FIMVYHDAMPLRAQLAAEAAASRTTAFVSNTAGAAPTMARENDAMFSRIKTDTERLRK
                     IGTVDKLFTTKEDVSRLQSVKDAGMFYLTELVAKRAAEDELTDKELLDLVSEIPDGIV
                     IADFYLPYICGSECMPMSFVVLPGKEEKPEETEKPTISIKPAEFCNGDNKDYEFTTSP
                     TPAAAGSVAGEGASTVNGKTVFNPSAVNLGNALQKNISFTYTVGAEKAETSATVFAVP
                     KASFAAALAPAPVTHVAPPAIALSNVVAVGSSFSWQVNGKEVSTVANPQRLPLEGNGP
                     QVVTLIARNGVCPEASFSQTLTFAPAEPVLTCTSLGIWQEAFQKWNQPGSRIFTVFMR
                     QFGSYQKVVAFFTNSVAQANGQPADKQVEILVQGAAPSTIIEWMQELNKMILEGISRP
                     LALELFRILEGLLVFYACMQKEDIDKAKTPTIDAFKIDSSLVAGWGNVAANFSASEKA
                     VLKQKMEDLAKELDNAKQNAPHKSNYLAVLEVIIKRLSAMA"
BASE COUNT          746 a          824 c          834 g          893 t
ORIGIN      
        1 gaatgaattg cagcaggatg tcttccgttc gctccgggat ctttaaagta atacggcttt
       61 cttttaattc caattgtcca tcgcgttgca agaaactttg gcgcaacgct gcaacgctgg
      121 tgttgcccaa tttggaccaa tgcgaaatca cggcagacaa caagtgatct gcttcttcct
      181 tccattctcc aggtatcccg gtatttgaat cgatcactgt ttcaaaggga actgcacaaa
      241 gcaatttggg caacgccaac tcccaatcga atgcatgtgt gttgactgtg gcgaggtaat
      301 gaaccagtaa gctggcttgt tgcgctgctt cttcatgctg ggccggatca atttgcaact
      361 gctgaaagaa gcgagggagg aaaggcgcta ccaggatcgc gccggcattg gctgcataca
      421 cttgttcatt tttattgagc gtcggagcta ttaggctttc tgccaaagtt gggtccttgc
      481 ctttcacttc tgtcaggctt tccttgaaag ccgcctcggt catttgcttt ttgctcttcc
      541 agtcttcggt agtataagaa gtttgttcag gagttccgaa tcccaacgta ccgagggttt
      601 cctgcaggta attcgaaaca tctgtggagg ggatgaagca actcttaatg aggcaatgca
      661 atacgtggtg gcgttctgca tcactgctga atgaagcatt ggaatttgcc tgttcaaacc
      721 aactgagcca attagacagg tggtatgaat gagaggccag caaagagagc accacttcat
      781 caaaccgttg ggtatccgca atcaaatgcc tgaatcgctg ccaggcattg ggaaactgca
      841 acatcttcag caacgcatat ccattttccg cattcattgc tgacaacgca tcaggagtta
      901 ttagtgactg cctccatttc tctatggttt gcttttccgg aatactgcca gatcccaggt
      961 acatcagcaa atcgttcatt gcaagtgaag gggcggtttg ccggcccttg tgcaatgcgc
     1021 catcgctggc agcatgactg agcgcttgct ctacctgccg cctgatctgt tgtcgggtcg
     1081 attcctcatt cattgcctgc atgctgtgta catggcattc tatgtgaaga tggtcaagca
     1141 cctgcgcaac atgttcatca ctccattcac tcatcacctc atccagtatt tcgagcaatt
     1201 ttccttgtac ccaatgctgc gttgcctggc tatccagcca ggttggactg gatatgtcaa
     1261 cctgtgcccg atggatccta tgttgttgac cagttgtcat caggccattg ccgacaggcg
     1321 tttgataatg acttcgagca cggccaggta attggatttg tgcggcgcat tttgcttcgc
     1381 gttatccagt tctttggcca ggtcctccat tttttgtttc agaaccgctt tttcagaagc
     1441 cgagaaattg gccgccacat ttccccaacc tgctaccagc gatgaatcaa ttttaaacgc
     1501 atcaatggtg ggagttttgg ctttgtcaat atcctctttt tgcatgcagg catagaagac
     1561 gagcaatcct tccaggatcc tgaagagttc caatgcaagg ggacgactga tgccttccaa
     1621 tatcatttta ttcaattcct gcatccattc aataatggtg gatggtgcag cgccctgcac
     1681 taatatttcc acctgcttgt ccgcaggctg tccattggcc tgtgccacgc tattggtgaa
     1741 gaatgccact actttttggt aggatccaaa ctggcgcatg aacacggtga atatcctgct
     1801 gccgggttga ttccatttct ggaatgcttc ctgccatatg cccaaagagg tgcaggtgag
     1861 aactggttct gccggagcga aagtcagcgt ttgggagaag cttgcttcgg gacaaacgcc
     1921 attccttgcg atcaaagtga ctacttgcgg gccgttgcct tccaggggca atcgctgggg
     1981 attggccaca gtggatactt ccttgccatt tacctgccat gaaaaactgc tgcctacggc
     2041 aaccacattg ctcaaagcaa tggcaggcgg cgccacatgg gtgaccggtg cgggtgccag
     2101 cgctgcggca aaggaagcct tgggtactgc gaaaacggta gcactggttt ctgctttttc
     2161 ggcacccact gtgtaggtga agctgatatt cttctgcaat gcgttgccca ggttcacagc
     2221 agatggattg aaaacagttt ttccatttac cgtgctggca ccttcgccag ccaccgaacc
     2281 agcggctgct ggggttggag aggtagtgaa ttcataatct ttgttatctc cattgcagaa
     2341 ctcagctggc ttgatgctga tagtgggctt ttccgtttcc tctggttttt cttccttgcc
     2401 gggcaacacc acgaaactca tgggcatgca ttcgctgcca cagatataag gcaggtaaaa
     2461 atcagcgatc acgatgccat ccggtatctc actcaccagg tccagcagtt ctttgtcggt
     2521 aagctcgtct tcggctgctc tcttggccac cagttcagtc aggtaaaaca taccggcatc
     2581 tttaaccgac tgcaggcggc tcacatcttc cttggtagta aacaatttgt cgacagtgcc
     2641 aatttttctc agccgttcag tatcggtttt gatgcgactg aacatggcat cattttccct
     2701 ggccattgtt ggtgcggcgc ctgccgtatt acttacaaag gcggtggtgc ggctggcagc
     2761 ggcttcggca gccaactgtg cacgaagcgg catggcatcg tggtacacca taatgaatgt
     2821 gcctcccaca ggaacaccgg ctttgtgctg tatgccactg ttgaggaagg agtacatggc
     2881 gaaggattgg ttggagaggt acaggaaaaa gcgaaacagg aaattccggt agagctccag
     2941 caacaatgtg cctttgcaga tgcggatcac cgcattcagc tgcaggtaca attccgggtc
     3001 atcaaattgt ttgttgtcgg tattggaggc aaaggccttg atggctttca gaatggcctc
     3061 ggccaccagc acggcatcac ggagccgaat gctcagttct atcatattta cctgcacaat
     3121 acctgcgggc agcgcctcat ggattttttc gaggtaatac atgagtgcga ccgggctgat
     3181 gaatttgccg gcgccaaaat tgaccgagaa tgcctgcagc atttgtgcgg gaggaatata
     3241 gccggcattc tttacggtgg gataccattc atcgaattgc aggcctactg ttgccgc
//
LOCUS       DATIQF010000072         3271 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_31659, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000072 DATIQF010000000
VERSION     DATIQF010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3271
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31659"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..423)
                     /locus_tag="VLL95_01110"
     CDS             complement(<1..423)
                     /locus_tag="VLL95_01110"
                     /inference="COORDINATES: protein motif:HMM:TIGR01891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSR37482.1"
                     /translation="MLKDTIQQLAQHYKQEYINIRHHLHSHPELSYQEYETSAFVQQE
                     LKKYGIPFTVMATTGVVGIVEGVNPSSRVIALRADMDALPIQEENDVPYKSTKPGVMH
                     ACGHDVHTTCLLGAARILNETKERWEGTVKLVFQPGEEK"
     gene            complement(448..927)
                     /locus_tag="VLL95_01115"
     CDS             complement(448..927)
                     /locus_tag="VLL95_01115"
                     /inference="COORDINATES: protein motif:HMM:NF016895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HSR37483.1"
                     /translation="MPRFSDFFKTILLAMTMCLATQFTYGQVDSSLVVVHVDYRADLL
                     AKKKSQINKLSVYKNSAGQYKGYRVMIINTNNRDLAYKMRGDVLRYFPNQAVYMAYQA
                     PYFKLKAGDFIKREDAEKFRKELSKYFTESFFIVSDIIKISPEEEARLLAEQEAKQY"
     gene            complement(975..1655)
                     /gene="deoC"
                     /locus_tag="VLL95_01120"
     CDS             complement(975..1655)
                     /gene="deoC"
                     /locus_tag="VLL95_01120"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004139 - deoxyribose-phosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0009264 - deoxyribonucleotide catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HSR37484.1"
                     /translation="MKPSDNIAATIDHTLLKPGMLLSQVEQLCKEADEYGFASVCVPP
                     LFVKQAKQMLQNSKSKVATVIGFPFGYSAVEAKLAEILLAIVDGADELDMVINFTALK
                     NNDWDYMANEINHVMPVIAAKDKVLKVIIESGVLTDDEIIKCCELYGAAGVHFMKTST
                     GYAEKGASVEAVQLMRKHLPDHIQIKASGGIRDYAFAKALLDAGATRLGTSGGVAIVQ
                     GQPSASNY"
     gene            complement(1642..2643)
                     /locus_tag="VLL95_01125"
     CDS             complement(1642..2643)
                     /locus_tag="VLL95_01125"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HSR37485.1"
                     /translation="MEVNHTGRHTFLVQRWIVLTSVVLLLIKFAAYYLTGSVAILTDA
                     LESIVNVVAGLVTLYSLYVAAKPRDAEHPYGHGKAEYLSASVEGTLIALAGLWILIEA
                     IGRLLHPEPVHQLDTGIILIAVSGIINYVAGAIAEKTGRRNQSLAITATGTHLKSDAY
                     STGGLVVGLLILYFTNIPWIDSAVAILFGVIILVTGIGIVRKSVAGIMDEADADILQR
                     MVVMLNANRQPNWVDLHNLRIIKYGSQLHVDCHLTVPWYLNIHEAHLEVDKLGNLIRQ
                     EFGDAIELFTHTDGCLPFSCKLCHLTDCPKRQYPFERKIEWTIQNIFENQKHTIETK"
     gene            complement(2649..3056)
                     /locus_tag="VLL95_01130"
     CDS             complement(2649..3056)
                     /locus_tag="VLL95_01130"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HSR37486.1"
                     /translation="MKTITQWENRMAFTSTFDGHVVELNGETGSDGKRLGYSPKALLL
                     SGLAGCSGIDVVEMLQKMRVPFTKLEIVTESEQTEDHPKVFKDIEIEYRIDASPEYED
                     KVKRAVDLSIEKYCGVAAMLKKNSNIIPKITLI"
BASE COUNT          776 a          799 c          754 g          942 t
ORIGIN      
        1 tttttcttcc cccggttgaa agaccagttt cacggtgcct tcccaacgct cttttgtctc
       61 attgagtatg cgggctgctc ccagcaggca ggtggtgtgc acatcgtggc cacaggcgtg
      121 catcacaccg ggtttggtgc tcttgtaagg cacgtcattt tcttcctgta tcggcagcgc
      181 atccatatcg gcacgcaacg ctattaccct ggaagaagga tttactcctt caacaatacc
      241 aactactcca gtggtagcca ttaccgtaaa tggaatacca tattttttca gttcctgctg
      301 aacgaatgct gaggtttcat attcctggta gctcagttca gggtggctgt gcaaatgatg
      361 cctgatgttg atgtactcct gcttatagtg ctgagcaagt tgttgtattg tgtctttaag
      421 cattggttaa ttcttgtagt atagcaatca atattgcttg gcttcctgtt cagccaacag
      481 gcgggcttct tcttcgggag atatcttgat gatatcgctt acaataaaga aagactccgt
      541 gaaatatttc gacaattctt tcctgaattt ctccgcgtct tcccgcttaa tgaaatcacc
      601 ggccttcagt ttgaaatagg gggcctggta ggccatatac acggcctggt tgggaaaata
      661 tctcaacaca tcgccccgca ttttgtaggc caggtcacgg ttgttcgtat tgatgatcat
      721 tacccggtat cctttgtact gcccggcgct gtttttatat acagacaatt tgttgatctg
      781 tgattttttc ttcgccagca gatcggcccg gtaatccaca tgcactacca ccaatgagct
      841 atccacctgc ccataagtaa attgggttgc caggcacatg gtcattgcca gcagtattgt
      901 tttgaagaag tcggaaaagc gaggcatgct caaatgtttg ggtgcaaact aaaaaatatg
      961 gttcagcctt tgtgttaata gttggaggct gaaggctgac cctgcacaat ggctacacca
     1021 ccactggtgc ccagcctggt agcgccggca tccagcaggg ctttggcaaa ggcataatcg
     1081 cgtatgccac ctgaggcttt gatctgaatg tgatcgggga gatgcttgcg catcagttgt
     1141 actgcttcta ccgaagcacc tttttcagca tagcctgtgg atgttttcat gaagtgcaca
     1201 ccggcggcgc cgtacaattc gcaacatttg atgatttcgt catcggtcaa tacgccactt
     1261 tctatgatca ctttcaatac cttgtcttta gcggctatca ccggcattac atggttgatt
     1321 tcattggcca tataatccca gtcgttgttt ttgagcgctg taaagttgat taccatatcc
     1381 agttcatcgg cgccatccac tatggccagc aggatttctg ccagttttgc ttcaacggcc
     1441 gagtaaccga aagggaagcc gatgaccgtt gctaccttgc ttttactgtt ttgcagcatt
     1501 tgctttgcct gtttcacaaa caaggggggc acgcatacag atgcgaaccc gtattcatcc
     1561 gcttctttgc acaattgctc tacctggctc aaaagcatgc ctggtttcaa caaggtatga
     1621 tcaatggtgg cggcgatatt gtcacttggt ttcaatggta tgtttttggt tttcaaaaat
     1681 gttttgaatg gtccattcta ttttcctttc gaaaggatat tgtcgcttgg ggcaatcagt
     1741 taggtggcag agtttacagc tgaatggaag acagccatca gtgtgagtaa acaattcaat
     1801 ggcatcacca aattcctgcc tgatcaggtt gcccagtttg tccacttcca aatgcgcctc
     1861 gtgaatgttg aggtaccagg gcacggtcag gtggcaatca acatgcaact ggctgccata
     1921 ctttatgatg cgcaggttat gcagatcaac ccaattgggt tggcgattgg cgttgagcat
     1981 taccaccatc ctttgaagaa tatccgcatc cgcttcgtcc atgatgcctg ccacactttt
     2041 gcgcacaatg cctattcctg taacaaggat aattacgcca aacaggatgg ctacggcgct
     2101 gtcaatccat gggatattgg tgaagtacaa aatgagcaga ccaacaacca gcccaccagt
     2161 agaataggca tccgatttca ggtgtgtgcc ggtagcggta atggcaagcg actgattgcg
     2221 ccgaccggtt ttttcggcaa tggcacctgc cacataattg ataataccac ttacggcaat
     2281 aagaatgatg cctgtatcca attgatgcac cggttcggga tgcagcaacc ttcctatcgc
     2341 ttctatcagt atccatagcc cagccagtgc aatgagcgtg ccttccacac tggcagaaag
     2401 atattccgct ttgccatggc cgtaagggtg ttccgcatcc cttggcttgg cagctacata
     2461 aaggctgtac aatgtcacca ggcctgctac cacattcacg atgctttcca acgcatcggt
     2521 gaggatggct acagaaccgg taagataata ggccgcaaat ttgatcagca gtaaaaccac
     2581 actggtgagc acaatccatc gctgaaccaa aaaagtatgc cggccggtgt gatttacttc
     2641 cactgccatc agattaaggt gatcttaggg atgatgttgc tgttcttttt cagcatagct
     2701 gctacgccac agtatttttc aatggaaaga tcaacggcac gcttcacttt gtcttcgtat
     2761 tcgggagagg cgtctatccg gtattcaatt tcaatgtcct tgaatacttt gggatgatct
     2821 tcggtttgct ccgattcagt cacgatttcc agtttcgtaa acggcaccct cattttctgc
     2881 agcatctcca ctacatcaat gccgctgcat ccggccagtc cactcagcag cagcgctttg
     2941 gggctgtacc cgagacgttt gccatcgctg ccggtttcgc catttaattc taccacatgc
     3001 ccatcgaaag tgctggtaaa ggccatgcgg ttttcccatt gtgtgattgt tttcataaga
     3061 tcaggtttgg tattttattc agtggtcttg tttgattcag attgaattgg caaaagcaaa
     3121 acgggcttcc acttccggcc agttgatgag gtcccaccaa gcattcacat aatcagctct
     3181 tttgttttga tacttcaggt agtaggcatg ttcccaaacg tcgatgccca gcaaaggata
     3241 gcctttgaat tcactcacat ccatcagcgg g
//
LOCUS       DATIQF010000073         3830 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_168471,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000073 DATIQF010000000
VERSION     DATIQF010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3830
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168471"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..739
                     /locus_tag="VLL95_01135"
     CDS             <1..739
                     /locus_tag="VLL95_01135"
                     /inference="COORDINATES: protein motif:HMM:NF024491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HSR37487.1"
                     /translation="DWALYCEGEAAAQLFLVCTDVWTRSSWSKQKTELIAANLTPELP
                     VRECLVRVRRNDWVRRHMQVARSYMEMFAKAKDNITIMSSYFLPGRSFRKAMRKAVER
                     GVNITVIAAGKSDVFTAKQAERYLYRWLLKNGIAVYEYQTHVLHGKLSTYDGKWVTVG
                     SYNVNDISTYASIELNLDVLNAPFASLVETELQSIIGQHCMRITPDYYEAHNSFLKRV
                     LQRACYQFIRMVFVLFTFYFRQLKQTS"
     gene            complement(741..1751)
                     /locus_tag="VLL95_01140"
     CDS             complement(741..1751)
                     /locus_tag="VLL95_01140"
                     /inference="COORDINATES: protein motif:HMM:NF016214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HSR37488.1"
                     /translation="MDSLTHLALGACVGEAFFDKKIGKKALLWGALANSLPDIDFIAN
                     WWMDTDDALLAHRGFTHSLLFAALAAPALALLAEKLHRPHNIRLKTWVFFFAIEIGLH
                     LFIDGFNNYGVGWLEPFSQQRFSFQTIYVADPFFSIAPGVACIVLLTTHLRYRQRRWW
                     WMLGLILPFAYLGYCSINKLKIDSDAQEIFVKQQIPHDRYFTTPAPLNNWLWFVVAGN
                     DSGYYVGFRSLFDSQQKIDFEYFPRNDHMLDSIRDHEDLQHLIRFSQGFYTVEQWSDT
                     LVFNDLRFGQMLGWEQPRGRFVFHYYLQHPGDNRLVVQRGRFKGWNVQVAKGLVKRIV
                     GN"
     gene            complement(1866..3245)
                     /locus_tag="VLL95_01145"
     CDS             complement(1866..3245)
                     /locus_tag="VLL95_01145"
                     /inference="COORDINATES: protein motif:HMM:NF013559.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M12 family metallopeptidase"
                     /protein_id="HSR37489.1"
                     /translation="MKKITFFFSLGLLAQMGFSQDLKSLIDNRRPGCTSDLSKYSPNA
                     QMFDTVKSRNVADNYLLWDNGETLKVKFLPGGGDPQLKETIKNLAKVWEQYANLKFDF
                     VADDYTGPTNIRVSLAGGRGHNSSVGSSANQISQSEQTINFDVLYWVDLDYYKNDIKN
                     GGPVVTMLKSKGVDLSQVKTYLDYFKIVAQYQPLKYNEKEVRRTVQHEFGHAIGLLHE
                     QSYPGAIPWNKSDSVYDYYNRTQGWYRRKVDFNVFEVANQMYTNGTSYDPKSIMHYPV
                     EAWQTTNGYTLGRNYDISAGDIAIIKALYPKDKKVSDREVAKITISNLSDMKAAADLT
                     RKGISVRPSFDLKTNSKLGEVYYVVRLYYKDGEDYYAVKAVGNDYNINGYCGGIFTAR
                     LLPNTTISYNKGSNKNLELFIPFTAIPDVGGKPLVATFNVFLVDTQNGNMTREMYYSV
                     SNQLSLPQK"
BASE COUNT          983 a          956 c          929 g          962 t
ORIGIN      
        1 cgactgggca ttgtattgcg agggggaagc cgcggcacag ttgttcctgg tttgcaccga
       61 tgtgtggacc cggtcgtcgt ggagcaaaca aaaaacagaa ctgatagccg ccaacctcac
      121 ccccgaattg cccgtccgtg aatgcctggt gcgggtgcgc cgcaacgact gggtgcgtcg
      181 tcacatgcag gtggcccgca gttatatgga aatgtttgcc aaagcgaagg ataacatcac
      241 catcatgtcg agctatttcc tgcccggccg ctccttcaga aaagccatgc gcaaagcagt
      301 ggaacgcggt gtgaacatca cggtgatcgc cgccggcaaa tcagacgttt ttacagccaa
      361 acaagccgaa cgctacctgt accgttggtt gctgaaaaac ggcattgccg tgtacgaata
      421 ccaaacacac gtactgcacg gcaaactgag cacctacgat ggcaaatggg tgaccgtggg
      481 ttcttacaat gtaaacgaca tcagcacgta cgcaagcatt gaattgaatc ttgatgtatt
      541 gaatgcgccc tttgcaagcc tggtagaaac agaactccaa agcatcatcg ggcagcactg
      601 catgcgcatc acccccgatt attacgaagc ccacaacagt ttcctgaaaa gggtgttgca
      661 aagagcctgc taccagttca tcaggatggt atttgtgtta ttcacttttt atttcaggca
      721 gttgaaacaa accagctgag tcaattgccg acgatccgct tcaccagccc tttggccacc
      781 tgcacattcc agcctttgaa acgccctcgc tgcaccacca gcctgttatc gccggggtgc
      841 tgcaaataat aatgaaacac aaaccgcccc cttggttgtt cccaacccag catttgccca
      901 aaccggagat cgttgaacac caaagtgtcg ctccattgct ccaccgtgta gaatccctgt
      961 gaaaaccgga tcaggtgctg caggtcttcg tggtcgcgaa tggaatcaag catatgatcg
     1021 ttgcggggga aatactcgaa atcgattttt tgctgtgagt cgaacaggga gcggaagccg
     1081 acgtaataac cgctgtcgtt gccagccacc acaaaccaca gccaattgtt gagcggagcc
     1141 ggcgtggtaa aataacggtc gtggggtatt tgctgcttta caaatatttc ctgcgcatcg
     1201 ctgtctattt tcagtttgtt gatgctgcaa taacccaggt aggcgaaggg caatatcaaa
     1261 cccaacatcc accaccaacg gcgctgccgg tagcgcaggt gcgtagtaag cagcacaatg
     1321 caagccaccc ccggagctat cgagaaaaac ggatcggcta cataaatggt ttgaaacgag
     1381 aaccgctgtt gactgaacgg ctccagccaa cctaccccgt agttgttgaa tccgtcaatg
     1441 aacaggtgca acccgatttc tatggcgaaa aagaaaaccc atgttttcag ccggatatta
     1501 tgcggccggt gcagtttttc ggccagcagg gccagggccg gcgccgccag ggccgcaaac
     1561 aagagcgaat gtgtaaagcc gcggtgcgcc agcagcgcat catcagtatc catccaccag
     1621 ttagctataa agtcaatatc gggaaggctg ttggccaaag cgccccacag cagggccttc
     1681 ttgccaatct tcttgtcgaa aaaagcctcg ccgacacagg cgcccaacgc caaatgggta
     1741 agtgaatcca tacgatggaa aagttacgaa aacggacgga ttggcagcat gacactgtcc
     1801 tttccccaaa aaacaaagag gaccatgcgg tcctctttgc tattgatcta atccggtaca
     1861 agcatttact tttgaggtaa actcaactgg ttcgatacgg agtaatacat ttcgcgggtc
     1921 atgttgccgt tctgtgtatc caccaggaac acgttgaaag tagcaaccag cggcttgcca
     1981 cccacatctg gaatggctgt gaatggaatg aacaattcca ggttcttgtt gctcccctta
     2041 ttatagctga tggtggtatt gggcagcagg cgggcagtga aaatgccacc gcagtaacca
     2101 ttgatgttgt aatcgttgcc cacagctttt acagcgtaat agtcttcgcc atctttataa
     2161 tacaggcgta ccacatagta cacttcgccc agtttagagt ttgtcttcag gtcgaaggag
     2221 ggacgtaccg aaataccctt acgggttaag tcggcagcag ccttcatatc gctcaggttg
     2281 ctgatggtga tcttggccac ttccctgtca gaaacctttt tatccttagg atagagggcc
     2341 ttgatgatgg caatatctcc ggccgaaata tcatagttgc gacccagggt atagccattg
     2401 gtagtttgcc atgcttctac ggggtagtgc ataatagact tgggatcgta tgaagtacca
     2461 ttggtgtaca tctggttggc cacttcaaac acgttgaagt caaccttgcg acggtaccaa
     2521 ccctgtgtac ggttgtaata atcatacaca gaatcagact tgttccaggg aatagcgccg
     2581 ggatagcttt gctcatgcaa caggccgatg gcatggccaa attcgtgctg cacggtgcga
     2641 cgcacttctt tttcattgta cttcagcggc tggtattgag caacaatttt gaagtagtcc
     2701 agataggttt tcacctggct aaggtcaacc cccttgctct tgagcatggt cactaccggg
     2761 ccgccattct taatgtcatt cttatagtaa tcgaggtcta cccagtacaa gacatcgaag
     2821 ttgatggttt gctccgattg ggatatctgg ttggcagaag aacccactga agagttgtga
     2881 ccacgcccac ctgccagcga aacacgaata ttggtaggtc cggtgtaatc atcggctaca
     2941 aaatcaaact ttaggttggc atattgctcc cacactttgg caaggttctt tatcgtttcc
     3001 tttagttgtg gatcaccacc acccggcagg aattttacct tgagggtttc gccattgtcc
     3061 cacaacaggt agttgtcggc cacattgcga ctttttacag tatcaaacat ttgggcgttg
     3121 ggcgagtact tcgacaggtc agaagtacaa ccggggcgac ggttgtcaat caggctcttt
     3181 agatcctggc tgaagcccat ctgggccaaa aggcccagag aaaagaagaa ggtgatcttt
     3241 ttcatgtgct gaattttggt tttaagattt ggtgcggagt atttatccat aaatcctgct
     3301 ggctggctga atcaatacct gggcgctgga ttggctggaa aaaattggtt tttgaatacc
     3361 tggtaaatgt aaaaggccgc tttgccatcc tgaataccca acattgggta tttggctaat
     3421 tcgccgaccg gcttttttat aggagtgatg aaagggtgag ggcgggaaaa aagcagcctt
     3481 acaattcaca aacctttcac ttctgctcag gtctaaatct atgcgttttt ttgatgtgat
     3541 tacacaggcc tccaaatttt ttgggactcc aatcgcctca ttcgactttg aaattgccca
     3601 tcgtgaaaat ctgcattgcg ccatgcgata atcatcccgt tgcattcttc acccaataac
     3661 tcgatgccgg gacccatctt ctcgcggcga tgcatttact atgactgttt tgaaagcggc
     3721 acctgtttgt aatgattcca tgaattatgg tacatttatt tgcagctttg ctattgattg
     3781 aacctgacca acctaatttt cattgcaaac cgatcttacc atacagccat
//
LOCUS       DATIQF010000074         2051 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_259865,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000074 DATIQF010000000
VERSION     DATIQF010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2051
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259865"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            277..>2051
                     /gene="glgP"
                     /locus_tag="VLL95_01150"
     CDS             277..>2051
                     /gene="glgP"
                     /locus_tag="VLL95_01150"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR02093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004645 - 1,4-alpha-oligoglucan
                     phosphorylase activity [Evidence IEA];
                     GO_process: GO:0005977 - glycogen metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan family
                     phosphorylase"
                     /protein_id="HSR37490.1"
                     /translation="MNTQSLDLRTGISVEELRQSILDNLTFQLGRTPELASLNDWYMA
                     VSYTVRDRLMKNWMKTLGELRNNKEKIVGYLSAEFLVGPHLGNALVNLNIEPQLREAV
                     TALGIDYNHLIHCEEEPGLGNGGLGRLAACYLDSMATLQIPSIGYGIRYEFGIFDQRI
                     INGEQVEITDKWLRNGNPWELAHTQLCYKVGFGGYTQTYTREDGRYEVRWIPSEEVKG
                     VGYDTPIPGYRNGAFSLLRLWKSEAPESFDFNEFNRGNYAQAVEQKVRAENISKVLYP
                     NDETEQGKRLRLMQQYFFVSCSLQDVLRIQQLRKMSYEELPEAFTLQLNDTHPSVAVA
                     ELMRLLLDEHDLEWDNAWRITQKTFAYTNHTLLPEALETWSLDLFGSLLPRHLEIIRE
                     INRRFLDELRANHPGDEALLGRVSILDEYGSRCVRMAHLATVGSKMVNGVSQLHTELL
                     KQDVLRDFYSIAPHQFVNVTNGVTPRRWMQLYNPAMSNLITECIGDKWLTNTEGALVK
                     LEAFAADKQFQQRWREIKHQNKQSLTDQLMVKTGILVNPDSLFDIQVKRIHEYKRQHL
                     NLLHIIALYNQIKANPKASFVPRTFV"
BASE COUNT          546 a          510 c          508 g          487 t
ORIGIN      
        1 atattttgct gaagtgcccc agcaaataca aggatgatat ggaggctgcc agcaagcagt
       61 tgcagaaaga aagttgattt gaatgaaaca cgatagtgaa tcccgcggaa atgcgggatt
      121 tttttttgcc cttacacaaa ggcggaaagg catttagctg cttgattttc gtcatagttg
      181 ttgccgctgt atcggccaac ctttacccgg cattggcaag ttggcagata atacctgcct
      241 tgcatgcggc attcattcat tccaaaacac agcactttga acactcaatc tctcgatctc
      301 cgcaccggaa tttccgtgga ggaattgcgc cagtccattc tcgacaacct gacttttcaa
      361 ctgggccgta cacccgaact ggcatcgctc aacgactggt atatggcagt atcctacacg
      421 gttcgcgatc gcctcatgaa aaactggatg aagaccctcg gtgaactgcg taataacaag
      481 gaaaaaatcg tgggctacct gtctgcagaa tttttggtgg gcccgcacct gggcaatgcc
      541 ctggtcaacc tgaacataga gccgcaactg cgggaagctg taaccgcttt gggtatcgat
      601 tataaccacc tcatccattg cgaagaagaa ccgggcttgg gcaacggagg tcttggccgt
      661 ttggctgcat gttatctcga ttccatggcc acgcttcaaa taccttccat tggttatggc
      721 atacgttacg agttcggcat tttcgaccag cgcattatca atggtgagca ggtggaaata
      781 accgacaaat ggttgcgcaa cggaaaccca tgggaactgg cgcataccca gctttgctac
      841 aaagtgggtt ttggaggcta tacacaaacc tacaccaggg aagatggccg ctatgaggta
      901 cgctggattc cttcggagga agtgaaagga gtagggtatg atacgcccat acccggctat
      961 cgcaatggcg cattctcttt gctgaggctt tggaaatctg aagcccccga atccttcgac
     1021 ttcaacgaat tcaaccgtgg caattatgcg caggcagtag agcagaaagt gcgggccgag
     1081 aatatttcga aagtgctgta ccccaatgat gaaacggagc agggcaaacg gctgcgcctg
     1141 atgcagcaat acttttttgt gtcgtgctcg ctgcaggatg tgctgcggat acaacagctg
     1201 cgcaaaatga gttatgaaga attgcccgag gcattcacac tgcaactcaa cgatacccat
     1261 ccatccgttg ccgtggccga actcatgcgt ttattgctcg atgaacacga cctggaatgg
     1321 gataatgcct ggcgcataac tcaaaaaaca tttgcgtata ccaaccatac cttgcttcct
     1381 gaagcattgg aaacatggtc gctggatttg tttggttcac tcttgccacg tcacctcgag
     1441 atcattcgcg aaatcaaccg gcggttcctg gatgaactgc gggccaacca tccgggtgat
     1501 gaagcgttgc tgggcagggt atccattttg gatgaatatg gttcgagatg tgtgcgcatg
     1561 gcccacctgg ccaccgtggg cagcaaaatg gtgaacggtg tttctcaatt gcacaccgaa
     1621 ttattgaagc aggacgttct cagggatttc tattccatcg cacctcatca attcgtcaat
     1681 gtgaccaatg gcgttacgcc caggcgttgg atgcaattgt acaatcctgc catgagcaac
     1741 ctgatcacgg aatgcattgg cgataagtgg ttgacgaata cagaaggagc actcgtcaaa
     1801 ctcgaagcct ttgccgccga caagcaattt cagcagcgat ggagggagat caaacaccag
     1861 aacaagcaaa gccttaccga ccaactgatg gtgaaaacag gcatcctcgt caatcctgat
     1921 tcgttgttcg atatacaggt gaagcgcatt catgaataca agcgccagca tctcaacctg
     1981 ctgcacatca ttgcactgta taaccaaatc aaggccaatc ccaaagcaag tttcgttcca
     2041 cgaacatttg t
//
LOCUS       DATIQF010000075         1957 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_62111, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000075 DATIQF010000000
VERSION     DATIQF010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62111"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..699
                     /locus_tag="VLL95_01155"
     CDS             <1..699
                     /locus_tag="VLL95_01155"
                     /EC_number="2.1.3.15"
                     /inference="COORDINATES: protein motif:HMM:NF013225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HSR37491.1"
                     /translation="SCGYHHRIGSREYFDILFDEKQYERLFDNIRSQDFLGFTDLKPY
                     KKRLEETWSKTDLHDSMSVAHGKVEGFDLVVACMDFEFIGGSLGSVMGEKICRAADYC
                     IEHKVPFMIISKSGGARMMESAFSLMQLPKTLGRLSLLSDAKIPYISLCTDPTFGGTT
                     ASFSMLGDVIIAEPKALIGFAGPRVIKETIKKDLPKGFQRSEFLLDHGFLDFIVDRRE
                     LKQKIALLLDMFQH"
     gene            752..1186
                     /gene="smpB"
                     /locus_tag="VLL95_01160"
     CDS             752..1186
                     /gene="smpB"
                     /locus_tag="VLL95_01160"
                     /inference="COORDINATES: protein motif:HMM:NF003843.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HSR37492.1"
                     /translation="MVINNKQAYHEYFIEQTFTAGLVLSGTEVKSLRAGKASFNDAYC
                     FFHKGELYIKSLHISEYKLGTIYNHLPTQERKLLLTKKELRKLEGKIKEKGYSIVPLK
                     IFFSESGYAKMEIGLGKGKKVHDKRDTIKQREADRELRRIVK"
     gene            1190..>1957
                     /locus_tag="VLL95_01165"
     CDS             1190..>1957
                     /locus_tag="VLL95_01165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37493.1"
                     /translation="MRGILIICAITFVFIGCHTRNLNHAFPNATGTDTLTGTRFFQLA
                     KSYNWQQRDSLAIVYFKAGAIPKWWKQFTRVSVKSVDSTGKTHQLYYWVSPDYFAVGT
                     NDDWVRVPVTPMAAQAMMDEMDCVLPTRKMVDQIHDAAKVKLVPVPMYAFRDSGITMY
                     QHHLMIEGQRKLRKGLISGIKKDVVTTYKLQYGPKANRLAIYGWHQANGKSIQPLYTG
                     HVNWYVDYSHGIRFVYNHCKLDNKNTLITELLADTKWA"
BASE COUNT          552 a          429 c          492 g          484 t
ORIGIN      
        1 agttgcgggt accatcatcg tattggcagc cgcgagtact tcgatatcct gtttgacgaa
       61 aagcagtatg agcgcctgtt cgataatatt cgcagccagg acttcctggg ctttaccgat
      121 ttgaaacctt ataaaaagcg tttggaagag acctggtcga aaactgacct ccacgacagc
      181 atgagcgtag cgcatggcaa ggtggaagga tttgacctgg tagtggcatg tatggatttt
      241 gaattcatag gtggtagcct gggcagtgtg atgggagaga agatctgccg ggcggctgac
      301 tattgtatcg aacacaaagt gcccttcatg atcatcagca agagtggcgg tgcccgtatg
      361 atggaaagcg cctttagcct gatgcagttg cccaaaacac tgggacgatt gtcgttgctc
      421 agcgatgcga agatcccgta tatctctctt tgcaccgatc caacgtttgg cggcactaca
      481 gcatcattct ccatgctggg tgatgtgatc attgccgagc ccaaagcgtt gattggcttt
      541 gcgggtcccc gggtgatcaa ggagacgatc aaaaaggatt tgccgaaagg cttccagcgt
      601 tcagagtttc tgctcgatca tggattcctc gatttcattg tggatcgtcg cgaactgaaa
      661 cagaagattg cgctgttgct ggatatgttt cagcattaag aaaatggaaa attcaaaagc
      721 gccatcaagg cgcttttttt gacagtgaat tatggtgatt aataataagc aagcctacca
      781 cgagtacttc atagagcaga catttactgc aggcctggta ttgtcgggca ctgaggtgaa
      841 atcgttgcgg gcaggcaaag ccagtttcaa tgatgcttat tgtttttttc acaaaggaga
      901 gttgtatata aagagcctcc acatcagcga atacaaactg ggcactatct acaatcactt
      961 gccgacgcag gaaagaaaat tgctgctcac taaaaaagag ttacgcaaac tggagggcaa
     1021 gatcaaggaa aagggataca gcatcgtacc actgaagatt ttcttcagcg aaagcggcta
     1081 tgccaaaatg gaaattggcc tgggcaaagg caagaaagtg cacgacaaac gcgacaccat
     1141 caagcaacgc gaagccgatc gtgaactgcg acgcatcgtc aaatagtgaa tgagaggcat
     1201 cctgatcata tgcgccatca catttgtttt tattggttgt cacaccagga acctgaacca
     1261 tgcatttcca aatgcaaccg gtactgatac tttaaccggc acccgttttt ttcaattggc
     1321 caaatcttat aactggcaac agcgtgattc actcgctatt gtttacttca aagccggcgc
     1381 cattccaaaa tggtggaagc agttcaccag ggtgtctgta aaatctgttg attccactgg
     1441 caaaacccac caactctatt attgggtgtc gcccgattat ttcgcggtgg gtaccaatga
     1501 tgattgggta agggtgcctg ttactcccat ggcggcgcag gccatgatgg atgaaatgga
     1561 ctgtgttttg cccaccagga aaatggtaga tcaaattcat gatgctgcaa aagtgaaact
     1621 ggtaccggta cctatgtacg cttttcgcga cagcggcatc acgatgtacc agcatcacct
     1681 gatgatagaa ggtcagcgaa agctgaggaa aggattgatc tcaggcatca aaaaagatgt
     1741 ggtgaccacc tacaaattgc agtatggacc aaaagccaac aggttggcca tttatggctg
     1801 gcaccaggct aatggcaagt ccattcaacc cctttatacc gggcatgtaa actggtatgt
     1861 ggattacagt catggcatcc ggtttgtata caatcattgc aagcttgata acaaaaacac
     1921 tttgataacg gagttgcttg ccgacacaaa atgggca
//
LOCUS       DATIQF010000076         2860 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_214248,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000076 DATIQF010000000
VERSION     DATIQF010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2860
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214248"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..957
                     /gene="hypD"
                     /locus_tag="VLL95_01170"
     CDS             <1..957
                     /gene="hypD"
                     /locus_tag="VLL95_01170"
                     /inference="COORDINATES: protein motif:HMM:TIGR00075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HSR37494.1"
                     /translation="EHITMVHGPGCPVCVTPIGIIDEAISLAERPGTILCSFGDMLRV
                     PGTQKSLLQAKAEGADVRILYSPLEAVQLAKENPNKEVVFFAVGFETTAPANALSVVH
                     AYQQQVSNYSILASHVLVPPAMEAILGDPENQIDAFLAAGHVCTIMGMDEYNPVAEKY
                     KTPIVVTGFEPVDLLQGILMAVKQLEAGRYEVENQYSRAVSREGNRMAQQTLQQVFEI
                     SDRSWRGIGNIPASGYEVSDAYKQFNARVKFNLGEMVDKENKECISGEIMKGLKKPYQ
                     CPHFGKGCTPEHPIGAPMVSSEGACAAYYHFHHMAQTVFEEV"
     gene            954..1994
                     /gene="hypE"
                     /locus_tag="VLL95_01175"
     CDS             954..1994
                     /gene="hypE"
                     /locus_tag="VLL95_01175"
                     /inference="COORDINATES: protein motif:HMM:TIGR02124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HSR37495.1"
                     /translation="MINLECPIPQFDFDVITLGHGSGGLLTHRLLQSGVFDIFKNPSL
                     DQQHDGALLQLEGKIAMSTDSYVVSPIFFPGGSIGDLAINGTVNDLAMCGAMPKYLTL
                     SFIIEEGLSIQEFWQVLVDIRKAAQAAGIQIVTGDTKVVEKGKGDKIFVNTSGIGLVH
                     AKAAIHHNRIQAGDKIIISGPIATHGITIMSLRKGLEFETSICSDTQPLHFITQELIE
                     TFGDAIRFMRDPTRGGVASVLNEIAGLTKLGYVLQQTAIPIHEQVEGACEMLGLDPLY
                     VANEGLFMAVVEPDVADEMVTLMKANAASARAAIIGEVTEEHPGKVTIRSSIGGRRVV
                     NFLPGEQLPRIC"
     gene            2027..2575
                     /locus_tag="VLL95_01180"
     CDS             2027..2575
                     /locus_tag="VLL95_01180"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HSR37496.1"
                     /translation="MNWWQHVLDLMQQYPQWALLISIAINTVVAIAGLVPSVFVTAAN
                     IYFFGFTNGVLVSIAGESVGAAISFILYRYFFRHKMQHLLARYPQAQKLANSYQKQSA
                     LLVIGLRLMPFVPSGIITFAAAIGSMHLLNFVVSSTIGKIPALLVEAALVQGFLEASW
                     PLQITMVALGSILLFFFLKKNR"
     gene            complement(2581..>2860)
                     /locus_tag="VLL95_01185"
     CDS             complement(2581..>2860)
                     /locus_tag="VLL95_01185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37497.1"
                     /translation="MTCLMLLHMEVRDEILKEEKYKYIFTVEAMNDLVNQGVSYRDAY
                     REIGNQVDAGTFSYDYKKLQHTHEGSIGNLCLAEIRQEMANVMQRILP"
BASE COUNT          716 a          732 c          727 g          685 t
ORIGIN      
        1 gaacacatca ccatggtgca tgggccgggc tgccctgttt gcgttacacc cattggcatt
       61 attgatgaag ccatttcgct ggcagaaaga cccggtacaa ttctctgctc ctttggcgac
      121 atgctgcgag tgcccggcac ccaaaaaagt ttgctgcagg caaaggccga aggtgccgat
      181 gtacgcatac tgtattcacc attggaggct gtgcaactgg ccaaagaaaa tccaaacaaa
      241 gaggtggtgt tttttgccgt gggatttgaa accaccgccc ctgccaatgc cctgagcgtg
      301 gtgcatgcat accagcagca agtgtccaac tacagcatac tggcttctca cgttctagtg
      361 cccccggcta tggaagccat tctcggtgat cccgaaaacc agatcgatgc tttcctggct
      421 gccggtcatg tttgtaccat tatgggcatg gacgaataca atcccgtagc agaaaaatac
      481 aaaacgccca ttgtggtcac aggctttgag ccggtggatt tgctgcaagg catactgatg
      541 gcagtgaagc aattggaagc aggccgctac gaagtggaaa accaatacag cagggcggtg
      601 agccgcgaag gcaaccgcat ggcgcagcaa acactgcagc aagtgtttga gatcagtgac
      661 cgcagttggc gtggcattgg caacattccg gccagcgggt acgaagtgag cgatgcctat
      721 aagcaattca atgcccgggt gaaattcaac ctcggcgaaa tggtagacaa ggaaaacaag
      781 gaatgcattt caggcgagat catgaaaggc ctgaaaaagc cctaccagtg tcctcatttc
      841 ggcaaaggtt gtacgcccga acatcccatt ggtgctccca tggtcagcag cgaaggcgcc
      901 tgtgctgcct attatcattt tcaccatatg gcacagaccg tatttgaaga agtatgatca
      961 acctggaatg ccccatacca caatttgatt ttgacgtgat tacgctgggt catggcagcg
     1021 gcggtttgct cacacaccgc ctgctgcaat ccggtgtatt cgatatcttc aaaaaccctt
     1081 ctctggatca gcagcacgat ggcgccttgc tgcaactgga aggtaaaatc gcgatgagca
     1141 ccgacagcta tgtggtctcg cccattttct tccccggcgg cagcattggc gaccttgcca
     1201 tcaacggcac agtgaacgac ctggcgatgt gcggcgccat gcccaaatac cttacgttga
     1261 gtttcatcat tgaagaagga ttatccatcc aggaattctg gcaggtattg gttgacatca
     1321 ggaaagccgc ccaggcagcc ggcatccaaa ttgtaacagg cgataccaag gtggtggaga
     1381 aaggcaaggg cgataaaatt tttgtaaata ccagtggcat tggtttggtt cacgccaaag
     1441 ctgcgataca tcacaatcgc atccaggctg gcgacaagat cattatcagc ggccctattg
     1501 ccacgcatgg catcaccatc atgagcctgc gcaaaggcct ggaatttgag accagcattt
     1561 gcagcgatac gcagccattg cacttcatta cccaggaatt gattgaaact tttggcgatg
     1621 ccattcgatt catgcgtgac cccacccgcg gtggtgtggc cagtgtactc aatgaaattg
     1681 caggccttac caaactcggg tatgtgctgc aacaaacagc cattcccatt cacgaacagg
     1741 tagaaggcgc ctgtgaaatg ctgggcctcg atccactgta tgtggccaac gaagggcttt
     1801 tcatggctgt ggtagagcca gatgttgctg atgaaatggt aacactcatg aaagcgaacg
     1861 cagcttcagc cagggcagcc atcattggcg aagtgaccga agaacatccg ggcaaggtca
     1921 ctatccgcag tagtattggc ggacggagag tggtgaactt tttgcccggc gaacaattac
     1981 cccgcatctg ttaggacagt tgaacaatcc agtgcaactt gcagccatga actggtggca
     2041 acatgtgttg gatttgatgc agcaatatcc gcaatgggca ttgctcatca gcattgccat
     2101 caatactgtt gtggccattg ccggattggt tccgagtgta ttcgtgacag cggccaatat
     2161 ttacttcttt ggtttcacca atggcgtact ggtttccatt gccggtgaat cggtgggagc
     2221 cgccatttca ttcatcctgt atcgttattt cttccggcac aaaatgcagc atttgctggc
     2281 acgctatcca caggcacaaa aactggcgaa cagttatcaa aagcaaagtg ccctgctcgt
     2341 aataggcctt cgcctgatgc catttgtgcc atcaggcatc atcacctttg cggcggccat
     2401 tggcagcatg cacctgctca attttgtggt gagcagtacc atcggaaaaa ttcctgcatt
     2461 gctggtggag gctgcactgg tgcaaggatt cctggaagcc tcgtggccat tgcaaatcac
     2521 aatggttgcc ctgggaagca tcttattgtt tttcttcctg aagaagaaca gatgaaatcg
     2581 ctatggcaaa attctctgca tcacattcgc catctcctgc ctgatctcgg ccaggcacaa
     2641 attgccaatg cttccttcgt gggtgtgctg cagttttttg tagtcgtatg aaaaagtgcc
     2701 ggcatctacc tggttgccga tttcccggta agcatcgcga tacgaaaccc cctggttcac
     2761 caggtcgttc atggcttcca cagtgaatat gtatttgtac ttctcctctt tcaaaatttc
     2821 atcacgcacc tccatgtgca aaagcatcag gcaggtcatt
//
LOCUS       DATIQF010000077         1850 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_259887,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000077 DATIQF010000000
VERSION     DATIQF010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1850
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259887"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(8..919)
                     /gene="moaCB"
                     /locus_tag="VLL95_01190"
     CDS             complement(8..919)
                     /gene="moaCB"
                     /locus_tag="VLL95_01190"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: protein motif:HMM:NF002947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional molybdenum cofactor biosynthesis
                     protein MoaC/MoaB"
                     /protein_id="HSR37498.1"
                     /translation="MVNITHKSTTLRQAIAMAVVNVSKQETIDAIVNRKVPKGDVFEF
                     SRAAGLLACKKTYEVIPDCHPLPVEYTAITHEISGLSIIIRVEVHTVYKTGVEVEAMH
                     GAAVTALTMYDMLKPIDDAIEISTIKLEKKKGGKSDIKYAYPDTVKVAVITCSDSVSK
                     GTHPDKSGDVIEQRLHKHKLAVSHREAIADEFDLIQSKAKQLIADGYQLILFTGGTGL
                     STRDVTPDAVRPLIERDVPGVMEAARNYGQQRTPYAMLSRGVAGFAGDALIITLPGSP
                     RGAEETMDAVFPYILHVFRVKEGVRHN"
     gene            complement(1051..1494)
                     /locus_tag="VLL95_01195"
     CDS             complement(1051..1494)
                     /locus_tag="VLL95_01195"
                     /inference="COORDINATES: protein motif:HMM:NF014448.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HSR37499.1"
                     /translation="MSDRKPKNIFKPGPIDPAFIGESIAKHATNTKIGGHSIFLGQVR
                     ADEIEGKKVTAIEYTAYEEMALQKMHEIREDIFAKYPLTCMHVYHSLGAVKEGEICLF
                     VFTSSAHRKPAIDACTECVERIKAELPVWGKEIFEGEGYQWKVNN"
BASE COUNT          382 a          516 c          432 g          520 t
ORIGIN      
        1 tccggcacta gttgtgacgt accccttcct tcacccgaaa cacatgcagg atatagggaa
       61 acacggcatc catggtttct tcggcgccac ggggagagcc gggcaaggta atgatgagtg
      121 catcgccggc aaagcccgcc acaccgcggc tcagcatggc ataaggtgta cgttgctgac
      181 cgtagttgcg ggctgcttcc atcacaccgg gcacatcgcg ttcgatcaat ggacgcacag
      241 catcaggtgt aacatctctg gtgctgaggc cggtaccgcc ggtgaataat atgagctggt
      301 aaccatcggc gatcagttgc ttcgctttgg attgtatcaa gtcaaattca tcggcaatgg
      361 cctcgcggtg actcacggcg agtttatgtt tatgcaaccg ctgctcaatc acatcgccgc
      421 tcttgtcggg atgcgtaccc ttgctcacgc tgtcgctgca ggtgattacg gctaccttca
      481 cagtgtcggg gtaggcatat ttgatatcgc ttttaccacc ctttttcttt tcgagtttga
      541 tggtcgaaat ctcaatggca tcatcgatgg gtttgagcat gtcgtacatg gtcagcgcag
      601 ttaccgccgc gccgtgcatg gcttctactt ccacaccggt tttgtacacc gtatgtactt
      661 ccacccggat gatgatactg agcccgctga tctcatgcgt aatggcggtg tattccaccg
      721 gcagcggatg acagtcgggg atcacttcat aggttttctt acaggccagc aaacccgcgg
      781 cccggctgaa ttcgaacaca tcgcccttgg gcactttgcg attgacaatg gcatcaatgg
      841 tttcctgctt cgatacattg accaccgcca tggcaatggc ctggcgcagc gtggtggatt
      901 tatgtgttat gttgaccata ttgtaccccc aaccccctaa agggggctat ttagctttta
      961 aattatactc aatcaattca aggaacgtta cagtttcaaa tcagacattc aaccagtgat
     1021 acccttctcc ccctttaggg ggccgggggg tcagttattc actttccact ggtacccttc
     1081 tccttcaaaa atttccttgc cccataccgg cagctcggct ttgatgcgtt ccacgcattc
     1141 ggtgcaggca tcaatagcgg gtttgcggtg agccgatgac gtgaagacga acaggcagat
     1201 ctctccttct ttcaccgcac ccaggctgtg atacacgtgc atgcacgtaa gcgggtattt
     1261 ggcaaaaata tcttcccgta tctcatgcat tttctgcaag gccatttctt cataggccgt
     1321 gtattcaatg gcagtcactt tcttaccttc tatttcatcg gcccgcacct gtcccaggaa
     1381 aatactgtgc ccgccgatct ttgtgttcgt agcgtgcttg gcaatgcttt cgccaatgaa
     1441 tgccggatca atgggcccgg gtttgaatat gttttttggt ttacgatcag acatagttat
     1501 ttgacgtttg tggtttgtgg tttttggttc ggtgcatcgg gcaggcgcaa aacattcatg
     1561 cctgatgaca taccgacttg tgttttcctt tttgaaccac agcgccactt cacgtcacag
     1621 catgtcacag cgttgtgttc ctccgtgtcg tcgtgtcttt gtggttcatt caacatcccc
     1681 cattcatcat tcctcattcc taattcctaa ttccccattc atcattcccc caaccccgcc
     1741 tctcacacta tacacttccc cttcgggaaa cttttctttc aatcgcaatg cagcctgcat
     1801 gcttcgcttg ccgctctggc aaatgaagat cacctgccgg ccttccatca
//
LOCUS       DATIQF010000078         5334 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_77432, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000078 DATIQF010000000
VERSION     DATIQF010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5334
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77432"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(202..1041)
                     /locus_tag="VLL95_01200"
     CDS             complement(202..1041)
                     /locus_tag="VLL95_01200"
                     /inference="COORDINATES: protein motif:HMM:NF012670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HSR37500.1"
                     /translation="MATLQETASQIRRDIVRMVHAVQSGHPGGSLGCTEFLTALYFKI
                     MRHNPSAFSMDGIGEDLFFLSNGHISPVYYSTLARSGYFEVSELSTFRKLNTRLQGHP
                     TTHEHLPGIRIASGSLGQGMSVAIGAALAKKLNGDKHLVFSLHGDGELQEGQIWEAIM
                     SAAHHKTDNFIATIDWNGQQIDGPTDKVMNLGDLAEKFEAFGWEVIHLEHGNEMDAVV
                     AALETAKMKTGQGKPIVILMKTSMGKGVDFMEGSHEWHGIAPSDAQLESALAQLPETL
                     GDY"
     gene            1274..2404
                     /locus_tag="VLL95_01205"
     CDS             1274..2404
                     /locus_tag="VLL95_01205"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: protein motif:HMM:NF013146.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MraY family glycosyltransferase"
                     /protein_id="HSR37501.1"
                     /translation="MIEMLMSLALAFGTAFYGLPALIHIANEKRLFDFPDERKVHHTP
                     IPALGGLAIYAGFITSFLLTVVFSGGNYVFQYFVAASVIMFFIGLKDDLLSVAPFKKF
                     LGQILAASLLVFKGGLTIASMEGLFGIYELQPVTSQLLSVATIVVIINAFNLIDGVDG
                     LAGTLAVVSSSFFAAYFAINGDFAFACMATSLVGAVAAFLIFNYSPARIFMGDTGSLL
                     VGLTNAALVLRFIQSAETAPVWPIASAAAVGFAILFVPLFDTLRVFSYRIIHGIPPFT
                     PDRNHIHHILMRFGWSHLKITLVLGLFSVVCIAAAIQLQHLGTSIVMVCMLTTAFLTV
                     GALIWKYHVQVKRQMQENFPRIGTKDKEAPVVPVSAKKAANQ"
     gene            2471..3034
                     /gene="frr"
                     /locus_tag="VLL95_01210"
     CDS             2471..3034
                     /gene="frr"
                     /locus_tag="VLL95_01210"
                     /inference="COORDINATES: protein motif:HMM:TIGR00496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HSR37502.1"
                     /translation="MSTDTGLLMKDTEEHMRKSIAHLESELAKIRAGKASPQMLDGLV
                     VDYYGNPTPINQVGNISVVDARTLTIQPWEKNMLQPIERSILQANIGITPQNDGNIIR
                     IFLPPLTEERRRELVKKSNHEGEHAKVSIRNLRRDAIEKVKKMQKDGLSEDAAKDTED
                     DIQSLTDRFIALVDKHLEAKEKEIMHV"
     gene            complement(3079..4020)
                     /locus_tag="VLL95_01215"
     CDS             complement(3079..4020)
                     /locus_tag="VLL95_01215"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSR37503.1"
                     /translation="MQNQRHSAFSWLLFVALCLIWGSSFILMKLGMFAADDSAALSAN
                     QVAAIRILSASLVLLPFAPGAWRRLPSAGTGGYIFLSGLLGSFFPAFLFCLAESKIDS
                     SLAGTINAITPIFTLLIATVFFQSKIALHKWVGIAVGFGGCLLLFTGKENASTGHYSY
                     GAFAVLATVCYGINVNMVRHRLMQVPSLDIASLAFSFLLLPSLAVLYFSGFFQLPMLQ
                     APYLGAILASATLGVIGTALASVLFYILVKRAGIVFASLVTYGIPFVALGWGILYGEK
                     IGVNQMIALLIILSGVYLANQNLLSFFRRRQKEIPPA"
     gene            4131..4550
                     /gene="mscL"
                     /locus_tag="VLL95_01220"
     CDS             4131..4550
                     /gene="mscL"
                     /locus_tag="VLL95_01220"
                     /inference="COORDINATES: protein motif:HMM:NF001843.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HSR37504.1"
                     /translation="MGWIKEFKDFASRGNLVDVAVAFVMGGAFGKVVTSFTNGIVAPV
                     ITLVTGGVDFSKKEVVLKAAQPVMNDKGEIESTIEAVTLKWGALLTAAIDFVIVAFAM
                     FMVVKAINAIRKKQEEAPAGPSSTDQLLMEIRDALKK"
     gene            4632..>5334
                     /locus_tag="VLL95_01225"
     CDS             4632..>5334
                     /locus_tag="VLL95_01225"
                     /inference="COORDINATES: protein motif:HMM:NF022720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3078 domain-containing protein"
                     /protein_id="HSR37505.1"
                     /translation="MIRKITVLVALTGSQLLNAQSNKNNIEYIDEAVKSKSIAADTSK
                     KKNWKFGGTVGFAFSQQNSSHWIGVSEEFAVNLGLNVDLYGNGAWGKNVWDNTFRASY
                     AFQNNQSVGFRNTADFFDMYSKYGRNLNQKKTLNAAMIFNFRSQFSNGYDYTVSPRRR
                     VSGFMAPARMLLTPGIDFKPTSYFSLFFSPFAAKWVFFTNDPFSYSTDPPPPNERPIS
                     ESHGVDPYTKVNSQFG"
BASE COUNT         1355 a         1293 c         1355 g         1331 t
ORIGIN      
        1 ttcgtgtttc gtcgcccgcc ggctgggtcc ccggactccc gaatggccgc tccgcggcgg
       61 ccggctgaac ggcaggacgt gtgcgggcgg acggggctgc gtgcaagacg aatggcggcg
      121 gttgtgccac ggtcggaata atgcagccat aaaaaaagcc ggcatttgca ggccggctct
      181 ctggatttct ttttcaaatt ctcagtaatc tccgagtgtt tcgggcaatt gtgccagggc
      241 gctttcgagt tgtgcatcgc tgggcgcaat gccatgccat tcgtggctgc cttccatgaa
      301 gtcaacacct ttgcccatgg atgttttcat caggatgaca atgggtttgc cctggccggt
      361 tttcatcttg gctgtttcca gggccgccac tacggcatcc atttcgttgc catgttccag
      421 gtgaatcact tcccaaccaa aggcctcaaa cttttcggcc aggtcgccca ggttcatcac
      481 cttgtcggtg gggccatcta tttgctgccc gttccagtcg atggtggcga tgaaattgtc
      541 agttttatga tgggcggcac tcatgatggc ttcccatatt tgcccctcct gcaactcgcc
      601 atcgccgtgc aaactgaata caagatgctt gtcgccattg agttttttgg ccaaagcggc
      661 accaatggct acactcatgc cctggccgag ggagccgctg gcaatgcgta tgcccggcag
      721 gtgctcatgg gtggtaggat ggccctgcag gcgggtgttc agtttgcgga aagtgctcag
      781 ttcactcacc tcgaagtatc cgctccgggc cagtgtagag tagtaaacag gcgaaatatg
      841 gccatttgac aggaagaaaa ggtcttcgcc tatgccatcc atagaaaagg cagaggggtt
      901 atgacgcatg atcttaaagt aaagggctgt caggaattcg gtgcagccca gtgaaccacc
      961 cgggtggccg ctttgtacgg catgtaccat tcttacaatg tctcttctga tttgggaggc
     1021 ggtctcctgc aatgtagcca tgatgctgaa tttggccgca aaactaaagg tttgaccagt
     1081 gcatgaattc gattttttga caaaaacata ccactcaata attaataagg gcacttcagt
     1141 gaaatatgtg aacaatcaag ttgctgcaaa agcgttagat agctatcttg ctattggaaa
     1201 cggctgaagt gtgatgagtt tttgtgataa cctgtctgat ccaaccatct ttacccacca
     1261 caactaaccg cgtatgattg agatgctgat gagcctggca ctcgcttttg gtaccgcatt
     1321 ttatggtctc ccggcactta ttcatatagc caatgaaaag cggttgtttg attttcctga
     1381 tgaacgcaaa gtgcaccata cgcctattcc cgcactgggg ggattggcca tttatgccgg
     1441 ctttattacc tcttttctgc ttacagtggt attcagcggt ggcaattatg tgttccagta
     1501 ttttgttgcg gccagcgtca tcatgttttt cattggcctg aaagatgacc tgctttcagt
     1561 tgccccattc aagaagttcc tgggccagat actggcggct tcgctgctgg tttttaaagg
     1621 cgggctcacc attgccagta tggaaggcct tttcggtatc tacgaattgc agccggttac
     1681 atcgcagttg ctttctgtgg ctaccattgt ggttatcatc aatgccttca accttattga
     1741 tggcgtagac gggctggcag gcactttggc cgttgtgtcc agctctttct tcgctgccta
     1801 ttttgccatc aacggcgatt ttgcctttgc gtgtatggca acttcattgg taggcgccgt
     1861 agccgcattc ctaatattca attattctcc ggcccgcatc ttcatgggag ataccggctc
     1921 attgttggtc gggctcacca atgccgcatt ggtactccgg tttatacaat ctgcggaaac
     1981 agcaccggta tggcctattg cctccgcggc agcggtgggc ttcgccattt tgtttgtgcc
     2041 gctgttcgac accttgcggg tattttccta ccggatcatt catggcatcc ccccctttac
     2101 gcccgataga aaccatatcc accacatcct gatgcgcttt ggatggtcgc atctcaaaat
     2161 caccctggtg ctgggcttgt tcagcgtggt ttgtattgca gcagccattc agttgcagca
     2221 cctgggcact tccatcgtaa tggtgtgcat gcttactacc gcattcctga ccgtgggggc
     2281 actcatctgg aaataccatg tacaggtaaa gcgccaaatg caggagaatt ttccccgtat
     2341 tggcaccaag gataaagagg cgcctgtggt acccgtttca gccaaaaagg cggccaatca
     2401 ataaccaagg gtgttcattc agcacaaata ctgttttctg taagtttgcg gcgaatcaaa
     2461 ttttttcgaa atgtcaacag acaccgggct cttaatgaag gatactgaag agcacatgcg
     2521 aaaatccatt gctcacctgg aaagtgaact agccaagatc agggcaggaa aagcatctcc
     2581 ccaaatgctc gacggcttag tggttgatta ctatggcaac ccgactccaa tcaaccaggt
     2641 aggtaatatt tcggtggtgg atgcccgtac gctcaccatt cagccttggg aaaaaaacat
     2701 gctgcagcct attgaaaggt cgatactgca agccaatatc ggcatcaccc cgcagaatga
     2761 cggcaacatc attcgcatct ttttgccgcc gcttactgag gagcgccgtc gtgaactggt
     2821 gaagaagtcg aatcacgaag gagagcatgc caaagtatcc attcgcaatt tgcgcaggga
     2881 tgccatcgaa aaggtgaaga agatgcagaa agacggcttg agcgaagatg ccgccaaaga
     2941 cacagaagac gatatccagt cactgacaga tcgtttcata gccctggtgg ataagcacct
     3001 ggaggccaaa gagaaagaga tcatgcacgt atagcgagca tcgttgaata cgcaaatgct
     3061 atggaatccc gcccgtattt atgccggcgg gatttctttt tgcctgcgcc ggaaaaagga
     3121 aagcaggttc tgattggcca ggtaaacacc ggacaggatg atcagcaatg cgatcatttg
     3181 attgacgcct attttttcgc catacaatat tccccaccct agcgccacga aagggatgcc
     3241 gtaagtgacc agcgaggcga agacaatgcc tgcccgcttc accagtatgt aaaagagtac
     3301 agatgccagg gcggtgccaa taacgccaag ggtagccgag gcaaggatgg cgcccaggta
     3361 aggggcctgc aacatcggca attgaaaaaa accactgaaa tacaatacag ccaatgatgg
     3421 cagcaggaga aatgaaaatg ccagtgacgc aatgtccagt gaaggcacct gcatcagccg
     3481 atgccttacc atattcacat tgatgccata acaaacagtg gccagtacgg caaatgcgcc
     3541 ataggaataa tggccggttg atgcattttc cttgcctgta aaaagcaaga gacatccgcc
     3601 aaaacccaca gcgatgccca cccatttgtg cagcgctatc ttactttgga agaacacggt
     3661 ggcaatgagc aaggtgaaaa tgggggttat ggcattgatg gtacctgcca gcgaactgtc
     3721 gatttttgac tcggccaggc aaaacaaaaa ggcgggaaaa aaactgccca gcaaacccga
     3781 cagaaaaata taaccgccag tgccggccga tggcagtcgt ctccaggcac ccggcgcaaa
     3841 aggcagtaac accagcgatg cgctgagtat cctgatggcc gctacctggt tggcactgag
     3901 agcggcgctg tcatcggctg cgaacatgcc aagtttcatc agtatgaagg aactgcccca
     3961 aataagacac agtgcaacaa agaggagcca ggaaaaagct gagtgtcttt ggttttgcat
     4021 gaaatgcaat agtattcgaa gctgatgaaa tttgaaagca caattgtagc accggtggcc
     4081 aaatgttgaa ttggagtata tttatcactt cacttttaaa accaaatctt atgggatgga
     4141 tcaaagaatt caaagatttt gcctcacggg gtaatttggt ggacgtggca gtagcttttg
     4201 taatgggcgg cgcctttggg aaagttgtca cttcatttac caatggcatc gttgcccccg
     4261 ttattacgct ggtgaccggc ggcgtggatt tttccaagaa ggaagtggtg cttaaagctg
     4321 cccagccagt gatgaatgac aaaggtgaaa tagaaagcac cattgaagcc gtaacgctca
     4381 agtggggtgc actgctaacc gccgccatcg atttcgttat cgtggctttc gccatgttca
     4441 tggtggttaa ggccattaat gccattcgca aaaagcagga agaagcgcct gccggacctt
     4501 ccagcaccga tcagctgctt atggaaataa gagacgcttt aaaaaagtag agcctgtttg
     4561 agtggatgtc aaatttcttg tatgcctttc ccagcaaggc agggatataa gtataccata
     4621 acctttgaga catgatcaga aaaattacag tgcttgtggc gctcactggc agccaattgc
     4681 tgaatgcgca aagcaacaag aataacatag aatatataga tgaagccgtg aagtctaaat
     4741 ccatcgctgc cgacacttcc aaaaagaaga actggaagtt tggaggaaca gttggctttg
     4801 cgttttcgca gcaaaacagc tcacactgga ttggggtaag cgaagaattt gctgtaaacc
     4861 tgggccttaa tgttgacttg tatggaaatg gggcctgggg aaagaacgtg tgggataata
     4921 ctttcagggc cagttatgct ttccaaaaca accaatcggt tgggtttcgg aatactgctg
     4981 acttctttga tatgtattcc aagtatggcc ggaacctaaa tcagaaaaaa acgctgaatg
     5041 cagcgatgat tttcaacttc cgctcccagt tttccaatgg gtatgattat actgtttccc
     5101 cacgcagaag ggtttcgggt ttcatggctc cagccaggat gctgctgacg cccggtattg
     5161 attttaagcc caccagttat ttcagcttgt ttttctcgcc ctttgcggcc aagtgggtct
     5221 tctttaccaa tgatccgttt agttattcca ccgatccccc acctcccaac gaaaggccca
     5281 tttcagaaag ccatggtgta gacccataca cgaaggtaaa ttcccagttc ggag
//
LOCUS       DATIQF010000079         1740 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_153498,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000079 DATIQF010000000
VERSION     DATIQF010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1740
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153498"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..440)
                     /locus_tag="VLL95_01230"
     CDS             complement(<1..440)
                     /locus_tag="VLL95_01230"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HSR37506.1"
                     /translation="MLNAKIPAGPLDKKWTSYKSTCKLVNPANKRKLEIVVVGTGFAG
                     ASAAAALGELGYKVKAFCFQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTIKG
                     GDYRAREGNVHRLAEVSGAIIDQCVAQGVPFAREYGGLLSNRSFG"
     gene            complement(558..1271)
                     /locus_tag="VLL95_01235"
     CDS             complement(558..1271)
                     /locus_tag="VLL95_01235"
                     /inference="COORDINATES: protein motif:HMM:TIGR02046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase cytochrome b subunit"
                     /protein_id="HSR37507.1"
                     /translation="MTWKQAFTSSIGKKVVMAATGIFLILFLIVHMGINACIFADLAV
                     FDANEDGKMFNLAAHFMGSHWVIRLLEIGLFAGIFLHIIQGLMLEFSNRSKRKQGYAV
                     PMGNRGSKWYSRSMGLLGTILLIFMILHWWHFWVPARFIGHPELTEIEYSGVGMHNMF
                     NLMKFTFSELWVVVLYVLACISLAYHLLHGFQSAFRTMGLRNSRWMALVQSVGVGYSI
                     IVPLLFALMPVAMYLGWVG"
BASE COUNT          455 a          443 c          407 g          435 t
ORIGIN      
        1 ccaaatgaac ggttgctgag caatccgccg tattcgcggg caaaaggaac accctgggcc
       61 acgcactggt caataatggc accactcact tcggccaggc gatgcacgtt tccttcacgg
      121 gcacggtagt cgccgccttt gatggtatcg taaaacaaac ggtatacgct gtcaccatca
      181 ttctgatagt ttttcgcagc attgataccc ccctgggcgg caatgctgtg agcccggcga
      241 gggctgtcct ggaaacagaa ggcttttacc ttgtaaccca gttcgcccag tgctgcggca
      301 gcactggcac cagcaaaacc agtacccacc actactattt caagctttcg cttgttggca
      361 gggtttacca gtttgcatgt gcttttatac gatgtccact tcttgtcgag cggtccggcg
      421 ggaatttttg cgttcagcat attgttcgta taagtaatta agtaagattc aaaattcttg
      481 gttcctgtgt tgtgctccgg cttttgtact actatcgggc ttttgttgtg tcactccctt
      541 caacggcagt gcatttttta gcccacccag cccaggtaca tggcaacagg catcagtgca
      601 aacagcagcg gaacgatgat ggagtaaccc actcctacgc tttgtaccag cgccatccag
      661 cgactgttgc gaaggcccat ggtgcggaag gcgctctgga aaccatgcag caggtggtat
      721 gccagcgaaa tgcaagccag cacatacagc accactaccc acagttcgct gaaagtaaat
      781 ttcatcaggt tgaacatgtt gtgcatgccc acgccactgt attcaatttc ggtgagttca
      841 gggtggccaa taaaacgggc cggcacccaa aaatgccacc aatgcaggat catgaaaatg
      901 agcaggatgg tacccagcaa gcccatgctg cggctgtacc atttgctgcc gcggttgccc
      961 atcggcacgg catagccttg tttgcgcttc gaccggttgc tgaactccag catcaggccc
     1021 tggatgatgt gcaggaaaat gccggcaaac aacccaattt caaggaggcg aattacccaa
     1081 tggcttccca taaaatgggc tgccaggtta aacatcttgc cgtcctcatt ggcatcaaat
     1141 accgcaaggt cggcgaaaat gcaagcattg attcccatat gtacaatcaa gaataggatc
     1201 aggaaaatgc cggtggcagc cattacaact ttcttcccga tcgacgaagt aaacgcttgt
     1261 ttccaggtca tattaataca cttagttagt tctgcttacc ctgcaaaaat gcaggcgccg
     1321 caaaagtagt gattgaacca attggcaacg atgataattt ggattgtcac caggccgttt
     1381 ttggtaaaac agaaaacaat tgaaagagtt ttatcaaaat cagaaccggc aacatatacc
     1441 gggatatttt cgtcacatgc cggtttgcct taaaaattac aaaatcagca tagtttagtc
     1501 gccgaaggac cgcagggctg caacggtatg gcgcctggtt cgtacgttaa aacaatgttt
     1561 tttccaggaa aatgaggcct acccctcctt actttacata caaatcttcg aatatgaaaa
     1621 aatcaattct acttgccgtt gtatttctta ctgcagctca agtatttggc caggacgcat
     1681 cggagcgtat tttcaagcct tttaaagtgg acgttagcgc aggattcgcg ttgcctctca
//
LOCUS       DATIQF010000080         5372 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_107925,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000080 DATIQF010000000
VERSION     DATIQF010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5372
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107925"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            188..874
                     /locus_tag="VLL95_01240"
     CDS             188..874
                     /locus_tag="VLL95_01240"
                     /inference="COORDINATES: protein motif:HMM:NF012696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HSR37508.1"
                     /translation="MNSLNQIIVGGWMLVALLSCNAPAKKEQQPANQKTNSSLSLRAL
                     IEGNSRFAGAHSVHPDESLDRTHEVAEAQHPIAVVIACSDSRVSPELVFDEGIGDIFV
                     IRTAGNIIGEIELGSVEYAVEHLQVPLVVVLGHERCGAVKALVDHEVPHGHLQCIIDS
                     LSQEPEIKAIPANDPDRLESCIRANINHGVNELLQQSPLLSNRVKQGTLKVIGARYDL
                     DDRTVSIIRQ"
     gene            complement(1081..1644)
                     /locus_tag="VLL95_01245"
     CDS             complement(1081..1644)
                     /locus_tag="VLL95_01245"
                     /inference="COORDINATES: protein motif:HMM:NF022588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2911 domain-containing protein"
                     /protein_id="HSR37509.1"
                     /translation="MKHLLMGSLFVLTSFVAMAQLQVTEPDKSPLDISYFPHGFPVMK
                     FQNKNAPASPKARIIYSRPQRNGRVIFGEVVKYGEVWRLGANETTEVEFFQDVTIGGK
                     KVAKGRYTLYCIPQEKKWTFIFNKGLDTWGAFSYRQDLDVLRTDVAVSTIDTNVEYFT
                     IVFDNVGSITVLWDKAKVSLPVKYSGK"
     gene            1713..2996
                     /locus_tag="VLL95_01250"
     CDS             1713..2996
                     /locus_tag="VLL95_01250"
                     /inference="COORDINATES: protein motif:HMM:NF014594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA hydrolase/transferase C-terminal
                     domain-containing protein"
                     /protein_id="HSR37510.1"
                     /translation="MLPPIEYVSAEQALQVVQSGHRVYVQGSAQTPHYLLHELAKQKD
                     RLKDVEMVFITVQGDIEVDKPDYDGHFHINCLFVSDSVRKAVNEGRADFIPSFLSDIP
                     DLFRSALPIDVALVQVSPPDGHGYCSMGVSVDIARTAVNTAKYIIAQVNPNVPRTHGD
                     GMVHVSRFSHLVWHEQPLVEIDYGAKTGPDELRIGEIIAGMIEDGSTLQMGIGTIPDA
                     VLKCLNNHKNLGVHTEMFSDGIIPLIEKDVINNKCKRIHPNKTVTAFAIGSKTLYNYV
                     NDNPSTVFLDIDYVNDPHVIRRNPKVIAINSAIEVDITGQVCADSIGMMKYSGIGGQM
                     DFMRGAALSEGGKPIIAITSRTAKGVSRIVPFLKQGAGVVTTRGHIHYLVTEYGIADL
                     WGKNMRQRAHALINIAHPDDREMLDKACWERFKRF"
     gene            3082..3591
                     /locus_tag="VLL95_01255"
     CDS             3082..3591
                     /locus_tag="VLL95_01255"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR37511.1"
                     /translation="MDTQLPTMFQLRLASPEDFEFIYTLYFHEATNAGLLYEPMFKEE
                     FLPIYTQLLAQQCKYVLVANDEPVGMVKLIRQTHRTRHVCYIGGLAIHPQHFGKGYGR
                     QLLEEVKQWAKERGIIRLELDVDEDNPRAKRLYEKAGFEVEGVLRKLAYRQKEQRYFD
                     NYRMALLLD"
     gene            complement(3595..4191)
                     /locus_tag="VLL95_01260"
     CDS             complement(3595..4191)
                     /locus_tag="VLL95_01260"
                     /inference="COORDINATES: protein motif:HMM:NF016239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008770 - [acyl-carrier-protein]
                     phosphodiesterase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP phosphodiesterase"
                     /protein_id="HSR37512.1"
                     /translation="MNYLAHAYFSFRQPEWLVGNMISDFVKGRLQYDYPPGIQQGIRL
                     HRAIDAFTDQHEATRQAKEIFRPHYRLYAGAFVDVVYDHFLANDPSHFATPGDLHAFS
                     QFAYQTLLEYYDVLPERFQQMYYRMREQNWLYNYRERWGMEKSFGGVVYRSRYLTESA
                     TAFALFEEHIEQLAVCYQSFVVDLENMLREWKQSAPML"
     gene            complement(4266..>5372)
                     /gene="prfA"
                     /locus_tag="VLL95_01265"
     CDS             complement(4266..>5372)
                     /gene="prfA"
                     /locus_tag="VLL95_01265"
                     /inference="COORDINATES: protein motif:HMM:TIGR00019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HSR37513.1"
                     /translation="CRHHLPSPASKGCIMIDKLEAIKARFEQVGVALTNPEVVSNQKE
                     FGRLSKEYRQLEKIVKPFEEYKKVLADLSFSKELLDGDDPEMRELAKEELPPLQEKSE
                     KLEAELKKLLIPKDPQDDKNAILEIRAGTGGDEASLFAGDLLDMYLRYCNKKGWKAAV
                     VSESEGTVGGYKEVVVEVEGEDVYGTLKFESGVHRVQRVPATETQGRVHTSAATVAVM
                     PEAEEVDFELREDDVKMETARSGGAGGQNVNKVETKVILTHLPIGTVVMCQTERTQLG
                     NREKAMTMMRTKLYEEQVRKQEEEIARQRKTLVSTGDRSAKIRTYNYPQGRVTDHRIG
                     LTVYNLDAVMNGEIDEFIEALQLAENAEKMANMQ"
BASE COUNT         1299 a         1416 c         1320 g         1337 t
ORIGIN      
        1 cggcatggat cattttggta gcaagcttca taacaacaat gatttgtgca gcaaatatgg
       61 aggtttttta ccgccctcct gttatatgac cttggtcaca caacaggcct taccgatgct
      121 gctattttgc atttgcctgg agggcatgtt cccatgggaa gcgaaaacga ttaccaggca
      181 tattgacatg aacagcttaa atcaaatcat agttggaggg tggatgctgg tggccctgct
      241 atcttgtaat gcccccgcca aaaaagaaca acagcctgca aaccaaaaaa caaattcttc
      301 cctttcccta agggcgctga tagagggaaa ttcccgcttt gcgggtgccc attccgttca
      361 ccccgacgaa agccttgacc ggacacatga agtggccgaa gcccagcacc cgattgcggt
      421 ggtgatcgcc tgctcagaca gccgggtgtc gccagaactg gtttttgatg aagggattgg
      481 tgacattttt gtgatacgaa ctgccggaaa tatcattggc gaaattgaat tgggaagcgt
      541 ggaatacgcg gtggagcatc tgcaggtgcc gctggtggtt gtactgggac atgagcgatg
      601 cggtgccgta aaagcactcg ttgatcatga agtgccgcat ggtcacctgc aatgcattat
      661 cgacagcctg agccaggagc ccgagatcaa ggcgataccg gccaatgatc ctgaccggtt
      721 ggaatcatgc atacgggcga atatcaatca tggagtaaat gaacttcttc aacaatcgcc
      781 tctcctcagc aacagggtga aacaagggac actcaaagtg attggtgccc ggtacgatct
      841 tgacgacaga accgtgtcga tcatccgaca atgaccactt caattggcgt catggcgatg
      901 caagtgcaaa gaccatcatg taacggatgg ttcatttcgc cggcagaagt ggttacactg
      961 tgcagtcagt atcttaaatg tcttttgccc gacaaccagt aaatgaataa tcggatgccg
     1021 gtcaggtgag gcagatgttt ggtcgcagct caccattcac ggattaaaag gattcaaatc
     1081 ttatttacca ctgtacttca cgggcaacga aacctttgcc ttatcccaaa gcaccgttat
     1141 ggaacctacg ttgtcaaaca cgatggtgaa atattctaca ttggtatcaa tagtgctcac
     1201 agctacatcg gtgcgcaata catccagatc ctgccggtag ctgaaggccc cccaggtatc
     1261 aaggcctttg ttgaaaatga aggtccattt cttttcctgc ggaatgcaat acaacgtata
     1321 cctgcctttg gctacctttt tgccgccgat ggtcacgtcc tggaaaaact ctacttccgt
     1381 ggtttcgttg gcacccagtc gccatacttc accatacttt accacctcgc caaaaatgac
     1441 acggccattg cgctgcggcc tgctgtaaat gatcctggct tttggtgacg caggtgcatt
     1501 tttgttctgg aatttcatca ccgggaagcc gtgtgggaaa taagaaatat cgagtggtga
     1561 tttatcgggt tcggttacct gcaattgtgc catcgcaaca aatgaagtca gcacaaacaa
     1621 ggaacccatt aacagatgct tcatgatata gctcattttc atcaaaaata atcgcttgca
     1681 tctttgtggg cgaattatta aacaccgatt gtatgttgcc ccccatcgaa tatgtaagcg
     1741 ctgaacaggc cttacaagtg gtacaaagcg gccaccgtgt atatgtgcaa ggcagtgccc
     1801 agacccccca ctatttgctc catgaactgg ccaaacaaaa agaccggctg aaagatgtcg
     1861 aaatggtttt cattaccgta cagggagata ttgaggtgga caagccggac tatgacggcc
     1921 atttccacat caactgtctt ttcgtaagcg attcggtaag aaaagcggtc aacgaaggcc
     1981 gggccgattt cattccttct ttcctgagcg atatccctga cctgttccgc tccgcactgc
     2041 ccattgatgt ggcgctggta caggtatcgc cacccgatgg ccacggctat tgctccatgg
     2101 gtgtttcggt agacattgcc cgtaccgcgg tgaatactgc caaatacatc attgcgcagg
     2161 taaatcccaa tgtgccccgt acccatggcg atggcatggt gcacgtttca cgcttttcgc
     2221 acctggtatg gcacgagcag ccattggtgg aaatagatta cggcgccaaa accgggcccg
     2281 atgaattgcg catcggcgaa atcatcgccg gcatgattga agacggcagc accctgcaaa
     2341 tgggcattgg caccataccc gatgccgtgc tcaaatgcct gaacaatcac aagaacctgg
     2401 gtgtacacac cgaaatgttc agcgatggca tcatacccct gatagaaaaa gatgtgatca
     2461 acaacaagtg caaacgcatt caccccaaca aaaccgttac cgcttttgcc attgggtcaa
     2521 aaacgctgta caactatgtg aatgacaacc ccagcactgt tttcctcgat atcgattatg
     2581 taaacgatcc gcatgtcatc cgccgcaatc ccaaagtgat agccatcaac agtgccatcg
     2641 aggtggacat caccgggcag gtatgtgccg acagcattgg catgatgaag tacagtggca
     2701 ttggcggcca aatggacttt atgcgtgggg ctgccctgag cgaaggcggc aaacccatca
     2761 ttgccattac cagccgcacg gcaaaaggtg tttcacgcat tgtgcccttc ctgaaacagg
     2821 gtgccggtgt ggttaccacc cgtggccaca tccattacct ggttaccgaa tacggcatcg
     2881 ccgacctgtg gggcaaaaac atgcggcagc gtgcccatgc cctcatcaat attgcccacc
     2941 ccgatgacag ggaaatgctc gacaaggcct gctgggaaag gttcaagcga ttctgacaac
     3001 ttgaatactg aaaccattgc atcgccggac aacaattgcc cggcgttttc attacttccc
     3061 gacttgatgc taacacttat cttggacact caattgccca ccatgtttca gttgcgcctg
     3121 gccagcccgg aggattttga attcatctat accctctact ttcatgaggc taccaatgca
     3181 ggcttgttgt atgagcccat gttcaaggag gagtttttgc ccatctatac ccaactgctg
     3241 gcccagcaat gcaagtatgt gctggtagcc aacgacgagc cagtgggtat ggtaaaactg
     3301 atccgacaga cacaccgaac caggcacgtt tgctacatcg gtggcctggc catccatcca
     3361 cagcattttg gcaaaggcta cggccggcaa ttgctggagg aagtgaaaca atgggcgaag
     3421 gagcggggca tcattcggct ggaactggat gtggatgaag acaacccgag ggcaaaacga
     3481 ctctatgaaa aagcaggttt cgaagtggaa ggcgtgcttc gtaaattagc ctaccggcag
     3541 aaggaacagc gttatttcga caattacaga atggctttgc tgctagatta attcttaaag
     3601 catcggggca gattgcttcc actcccgcaa catgttttca aggtcgacaa caaatgactg
     3661 gtagcaaaca gctaattgtt caatgtgctc ttcgaataat gcaaatgccg tagcactttc
     3721 agtgaggtac cggctgcggt acactacgcc cccaaaactt ttttccatgc cccagcgctc
     3781 ccggtagttg tacaaccagt tctgctcccg catccggtag tacatctgct gaaatctttc
     3841 gggcaataca tcgtaatact ccagcagggt ttggtaggcg aattgagaaa acgcatgcag
     3901 atcaccaggg gtggcaaaat gcgagggatc gttcgccagg aaatgatcgt acaccacatc
     3961 tacaaacgca ccggcataca ggcgatagtg cggtctgaaa atttcttttg cctgccgggt
     4021 ggcttcgtgt tgatcggtaa aagcatcaat ggcgcggtgc agtcgtatgc cttgctgaat
     4081 gccgggcgga taatcgtatt gcaggcggcc ttttacaaaa tcgctgatca tgttgcccac
     4141 cagccactct ggctgccgaa aagaaaagta tgcatgggcg aggtaattca tgaaagcaaa
     4201 ttgcgtcatg caatttactg tgggcagggc ctaccctggc acaaaagtta cgaggtggtg
     4261 aaaacctatt gcatgttggc catcttctcg gcattctctg ccagctgcag cgcctcgatg
     4321 aattcatcga tctcgccatt catcacggca tccaggttgt acacggtcag tccaatgcgg
     4381 tggtccgtta ctcttccttg cggatagttg taagtgcgga tcttggcact gcggtcgccg
     4441 gtgctcacca gggttttacg ctggcgggct atttcttctt cctgcttgcg tacttgctct
     4501 tcgtacagtt tggtacgcat catggtcatg gccttttcgc ggttgcccag ctgcgtacgt
     4561 tcggtttggc acatcaccac cgtgccgata ggcaggtggg tgagaataac tttggtctcc
     4621 accttgttta cgttctggcc accggcgcca ccactgcggg ccgtttccat tttcacatcg
     4681 tcttctctca actcgaagtc cacttcttcg gcttcgggca ttacagcaac ggtggcggct
     4741 gatgtatgca cccgtccctg tgtttcggta gcaggcaccc gctgcacccg atgtacgccg
     4801 ctttcaaatt tcaacgtgcc atatacgtct tcgccttcta cttccaccac cacttctttg
     4861 tagccaccta cggtgccttc gctttcgctc accaccgcgg ctttccagcc cttcttgttg
     4921 caataacgca ggtacatatc cagcaggtcg ccggcaaaca aactggcttc atcaccaccg
     4981 gtgcccgccc gtatttcgag gatggcattc ttatcgtcct gcgggtcttt gggtatcagc
     5041 agttttttca gttcggcttc cagcttttcg cttttctcct gcaggggcgg cagttcttct
     5101 ttggccagtt cccgcatttc cgggtcgtcg ccatccagca gttctttgct gaaagagagg
     5161 tcggccagta cttttttgta ttcctcaaac ggcttcacga tcttctccaa ctggcggtat
     5221 tccttgctca gccggccaaa ctccttttgg ttgctcacca cttcggggtt ggtcagggcc
     5281 acgcctacct gctcaaatct tgctttgatg gcttccagtt tgtcgatcat aatacatcct
     5341 tttgaggccg gcgaaggtaa atgatgccgg ca
//
LOCUS       DATIQF010000081         2081 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_290338,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000081 DATIQF010000000
VERSION     DATIQF010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290338"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..207)
                     /locus_tag="VLL95_01270"
     CDS             complement(<1..207)
                     /locus_tag="VLL95_01270"
                     /inference="COORDINATES: protein motif:HMM:NF017936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSR37514.1"
                     /translation="MDRVNEWVQLLNMNPHPEGGYFAETYRSSLMTDTPGGPRPVATS
                     IYFLLTAGNFSAFHRIVSDEGWHHY"
     gene            580..972
                     /locus_tag="VLL95_01275"
     CDS             580..972
                     /locus_tag="VLL95_01275"
                     /inference="COORDINATES: protein motif:HMM:NF015513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HSR37515.1"
                     /translation="MNIENTASQMRKGVLEFCVLSVIRKGEAYPSDIIEQMKSANFQL
                     LEGTLYPLLTRLKNSGMVNYRWVESSSGPPRKYFSLTDKGQVFYQELENTWNEMVSAV
                     NGVIQSEAISPPPEPSANTPTFTQNHEA"
     gene            1130..>2081
                     /locus_tag="VLL95_01280"
     CDS             1130..>2081
                     /locus_tag="VLL95_01280"
                     /inference="COORDINATES: protein motif:HMM:NF015957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0080135 - regulation of cellular response
                     to stress [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HSR37516.1"
                     /translation="MKKVININFQGRVVPIEETAYEMLQNYISSLRSYFANEEGRDEI
                     INDIENRIGELFSETLKKGAACITDDDVNKVISSIGRPEDFEEADAGSDTSNSTQYQQ
                     AGQSYQSYSEAGTEEKKRLYRDEEDKILAGVASGIAHYLKVDPAVVRIIFALLAIFGG
                     SGFLIYIILWIVLPSRSLVTNIRKRLYRDPDDKVIAGVCGGLGKYFDINPAIPRVIFA
                     APFIFGIITSIGRSFFHEGPFFVGSFGGGTFILIYIILWIVLPEALTASEKLEMRGEK
                     VDINSIRDTVMSDLQGVKGRAQKMGKEFQASAQRMGEEMKE"
BASE COUNT          606 a          582 c          450 g          443 t
ORIGIN      
        1 ataatggtgc cagccttcat ctgaaacaat gcgatggaag gccgaaaagt tgccggccgt
       61 cagcaggaaa tagatactgg tggccaccgg ccggggaccg cctggcgtat cagtcattaa
      121 tgatgaccga taagtttcgg caaaataccc accctccggg tgtgggttca tattcaatag
      181 ttgtacccat tcgtttactc tgtccatacc ccaaatttgg cagcttttca tttgataatc
      241 ggccatcccg ccattttgcc gcctcaaaat atcgccactc gtccacctat tttgccattc
      301 ctacaatctg cctaatggcc attttctggt gaatagaaat gtaaagcctt gaaatacagc
      361 acattttaaa ttccatacaa tacccaccac tgccatgtac taaaaaaata atggtactat
      421 gtgttgcata gtaccaaaag aagcccatat ctttgtgttg tcaatgaggg aagtcggtga
      481 tgccgggagt cgaaaacaaa aaacattcac tcactcacac acccagcctt tcggacttac
      541 cgacttcccc gctttcagac actgtaaaac acaaacacta tgaacatcga aaacaccgcc
      601 agtcagatgc gcaaaggagt gctggagttc tgcgtgttgt cggtgatacg caaaggggag
      661 gcctacccaa gcgatatcat tgaacaaatg aagagcgcca acttccaact gctggaaggt
      721 accttgtacc cactcctcac acgcctcaag aattcgggca tggtaaacta ccgttgggta
      781 gaaagcagca gcggaccgcc ccgcaagtat ttcagcctta ccgataaagg acaggtcttt
      841 taccaggaac tggagaacac ctggaacgaa atggtaagtg cggtaaacgg ggtcatccaa
      901 agtgaggcca tctcaccccc accagaacct tccgccaaca cacccacatt cacacagaac
      961 cacgaagcct gacacaccca ccgctcaaac acacactcag cactacacac taccaacatc
     1021 acacccgcac caaacaacgc actcacgcta caacacaaca cacaaagcac accacactaa
     1081 caactgtcac acacacgcca acttacatcc tctcaaacac aaaagcacca tgaaaaaggt
     1141 aatcaacatc aacttccagg gtcgtgtagt tcccattgag gaaactgcct atgagatgtt
     1201 gcaaaactac attagcagcc tgcgctccta ctttgccaat gaagaaggac gcgatgagat
     1261 cataaacgat atcgaaaacc gcattggcga acttttcagt gaaacactga aaaaaggagc
     1321 cgcctgcata actgatgacg acgtaaacaa agtgatcagc agcattggcc gccccgaaga
     1381 ttttgaagaa gcagacgccg gatcagacac aagcaacagc acgcaatacc agcaggctgg
     1441 ccaaagctac cagtcgtaca gcgaagcagg caccgaagaa aagaagcgcc tctaccgcga
     1501 cgaggaagac aagatcctgg ccggtgtagc cagcggcatt gcccactacc tcaaggttga
     1561 ccctgctgta gtgcgtatca tattcgccct gcttgccatc tttggtggtt ccggcttcct
     1621 gatctacatc attctgtgga tcgtgctgcc cagccgcagc ctcgtcacca atatccgcaa
     1681 gcgcctctac cgcgatccgg acgacaaagt gatagctggt gtttgcggtg gcttgggtaa
     1741 gtatttcgac atcaaccctg ccataccccg cgtcattttt gccgctcctt tcattttcgg
     1801 catcatcact tccattggcc gctctttttt ccatgaaggt cccttctttg taggcagctt
     1861 cggcggcggc accttcatcc tcatctacat cattttgtgg atcgtattgc ctgaagcatt
     1921 gactgcctcg gaaaagctgg aaatgcgtgg tgaaaaagta gacatcaaca gcattcgcga
     1981 taccgtaatg agcgatctgc aaggcgtgaa agggcgtgcc cagaaaatgg gaaaagagtt
     2041 ccaggcatcg gctcagcgca tgggtgaaga aatgaaggaa a
//
LOCUS       DATIQF010000082         1632 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_16706, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000082 DATIQF010000000
VERSION     DATIQF010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16706"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..724)
                     /locus_tag="VLL95_01285"
     CDS             complement(<1..724)
                     /locus_tag="VLL95_01285"
                     /inference="COORDINATES: protein motif:HMM:NF014301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PA domain-containing protein"
                     /protein_id="HSR37517.1"
                     /translation="MRNILLLCVAALVAVSTTFAQSIRGFVNAEPQLKTEKQFDAAID
                     ANHIGSMIKSLSAKQHHLGSPGSKAVAEQVLAWMKSWGLDAQIETYKVLFPSPKTRVL
                     EMGSYKASLKEAVLKEDPSTGQADELPTYNAWSADGDVTAPLVFVNYGVPSDYEMLDR
                     MGISVKGKIVIAKYGRSWRGIKPKVAQEHGAIGCIIYSDPQDDGYRKGDVYPVGAFKH
                     ETGVQRGSVMDMPIYPGDPLTPN"
     gene            complement(838..1539)
                     /locus_tag="VLL95_01290"
     CDS             complement(838..1539)
                     /locus_tag="VLL95_01290"
                     /inference="COORDINATES: protein motif:HMM:NF025253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098024 - virus tail, fiber [Evidence
                     IEA];
                     GO_process: GO:0019062 - virion attachment to host cell
                     [Evidence IEA];
                     GO_process: GO:0046718 - viral entry into host cell
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber domain-containing protein"
                     /protein_id="HSR37518.1"
                     /translation="MALGQYNDASDAPNSIALNVSDRIFQIGNGLDNNLRTNALTVLR
                     NGNTGIGVLDPGYRLDLAGRMRIRSGGSGGSSAGIWLNKNDNSGLLGFVGVDGNNDIG
                     IYSNTSGWSFVVDDATGNAMVKGTVTANGVTLTSDERLKKDITPLDEAMPLLEKLNGY
                     QYHWKDASWDASLQTGLLAQEVEKVMPELVKTDDKGLKSVNYIGLIPYMLEAFKGQQK
                     EIEELKKLVAELMKK"
BASE COUNT          353 a          447 c          385 g          447 t
ORIGIN      
        1 cattgggagt cagcgggtcg ccggggtaaa tgggcatgtc catcacactg ccacgctgca
       61 caccggtttc gtgcttaaaa gcccccaccg ggtacacatc gcctttgcga tagccatcgt
      121 cctgcggatc gctgtagatg atgcaaccaa tggcgccgtg ctcctgtgcc actttgggct
      181 tgatgccccg ccagctgcgg ccgtatttgg caatcacaat tttccctttc acgctgatgc
      241 ccatgcggtc gagcatttca taatcggagg gtacaccata gtttacaaat accaatggtg
      301 cagtcacgtc gccatcggca ctccacgcat tgtaggtagg caactcatcg gcctgcccgg
      361 tgcttgggtc ttctttcaac accgcctctt tcaacgatgc cttgtaactg cccatttcca
      421 acactcgtgt tttaggcgaa gggaacagca ctttgtatgt ttcaatttgt gcatcgaggc
      481 cccagctctt catccaggcc agcacttgct ctgccaccgc tttgctgccg ggtgagccca
      541 ggtggtgttg tttggcgctg agcgacttga tcatgctgcc aatatggttg gcatcaatgg
      601 ccgcatcaaa ttgtttttcg gttttcagtt gcggttccgc attcacgaag ccgcggatgg
      661 attgggcgaa tgtggttgac acagcaacca atgctgccac gcacaacagc aggatgtttc
      721 tcatacgttg tcagtttaga tggaaatcgg aatgtacgaa atgcgtgaac aatgagtacc
      781 caaaaacaga acgccccctg aaaaggaggc gcttgatttt ggtaaataga gggtgtgtta
      841 tttcttcatg agttcagcta ccagtttctt cagttcttct atttcttttt gctgcccctt
      901 aaaagcctcg agcatatagg gaatgagacc tatatagttc acactcttca ggcccttgtc
      961 gtctgttttt accagttcgg gcattacttt ttctacctcc tgtgccagca ggccggtttg
     1021 caggcttgca tcccacgatg catctttcca atggtattga tagccattca gcttttccag
     1081 caatggcata gcctcatcca aaggtgtaat atcttttttc agtcgctcat cactggtgag
     1141 ggtaactcca ttagccgtaa ccgtcccttt caccattgca ttgcctgtgg catcgtccac
     1201 cacaaaactc cagccactgg tattgctgta gataccaatg tcgttgttac catccactcc
     1261 tacaaaaccc agcaagccac tattgtcgtt tttgttgagc cagatgccgg cactgctgcc
     1321 gccgctgccg ccgctgcgaa tgcgcatccg gccggcaagg tccaggcggt acccgggatc
     1381 cagcacgcct atacccgtgt tgccattgcg taatactgta agggcattgg ttcgtaaatt
     1441 attatcaagg ccgtttccaa tctggaaaat cctgtcactt acatttaggg caatcgagtt
     1501 gggtgcatca gaagcatcat tatattgacc aagtgccatg ccgccgaatg ctttcgcgat
     1561 agtgcctaag cccattgctg tagaaaatct cccaattgcc ttcgaatagg agcccatggc
     1621 ggttgtctca tc
//
LOCUS       DATIQF010000083         3426 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_16721, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000083 DATIQF010000000
VERSION     DATIQF010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3426
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16721"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            257..445
                     /locus_tag="VLL95_01295"
     CDS             257..445
                     /locus_tag="VLL95_01295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37519.1"
                     /translation="MALVWSLAGSSQCSICTKTASQLGKQSAEGLNGGIVYLMFVPFL
                     IGGYIGYRWWKQEKTNPS"
     gene            complement(489..1007)
                     /locus_tag="VLL95_01300"
     CDS             complement(489..1007)
                     /locus_tag="VLL95_01300"
                     /inference="COORDINATES: protein motif:HMM:NF024812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR37520.1"
                     /translation="MISLDAGLCELRTLQPRDAESMAQYANNERIWQNVRDYFPHPYR
                     IEDAVSFIATECNRETQQNLGVIYEDACIGVIGFYPMQDVYRLTADFGYWIGEPFWGK
                     GIISAAISVMAEYIFNHTGIIRLQSSVFDFNKASMRVLAKNGFTLDCIARKGAIKNGE
                     IVDEYRFSRLKS"
     gene            1076..1816
                     /locus_tag="VLL95_01305"
     CDS             1076..1816
                     /locus_tag="VLL95_01305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37521.1"
                     /translation="MEHSAARNFFLFLLSTAAVLGTYNATGQKAVIVGVVTDKLSKQP
                     VRTASIRNITSGNTVVSRSAGQYSITGLKGNILSFSATGYFTDTLTITDSVLQLKKVD
                     IVLRPLSGTLPDVTVTAKLNPYQIDSLERRRNFLALVGESKLPRVSTVNDLGFGVGIN
                     LDYWKKRERSKRKARELFDITEEEAYINYRWTDTLVHKYSRLNGDTLIDFMQQYRPTW
                     EWLRQNEEEEDLVYHINKSLKQYFKREK"
     gene            complement(1867..2283)
                     /locus_tag="VLL95_01310"
     CDS             complement(1867..2283)
                     /locus_tag="VLL95_01310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37522.1"
                     /translation="MKKQIGIWIDTIHAYIINMNEDEPRIETIDSGIVPNERFAGEGK
                     RFTRVGNVFIDFEKNEERKFDQRMEDYLKKVMSLLKGADELFIFGPAQTRIKLGKKIE
                     EEKTMKNIAMVNEAAEDMSERQMVAHVRQHFAAHTV"
     gene            complement(2305..2712)
                     /locus_tag="VLL95_01315"
     CDS             complement(2305..2712)
                     /locus_tag="VLL95_01315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37523.1"
                     /translation="MFSYTSLYKQLGNLFYAVAKADKQITIAEKNAMVELVRYFWKHL
                     EDSTDSYGTDAANIILFQFDVNEENSTAPEKAFRQFEQFFAANAGSINHYLREKIMNS
                     ARRIASSTRFTNHDEMEMLLRLKSLLGIPIGAI"
     gene            complement(2830..>3426)
                     /locus_tag="VLL95_01320"
     CDS             complement(2830..>3426)
                     /locus_tag="VLL95_01320"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: protein motif:HMM:NF014498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase"
                     /protein_id="HSR37524.1"
                     /translation="GMKALSDIICTSSNAKAIIDSLPADQPIIFAPDKNLGAYLNKVT
                     GRNMVLWNGACMVHEIFSLEKITKLKTRHPEARFIAHPECEEAVLRIADYIGSTTQLL
                     KYTKSDSAQSYIVATEPGILHQMQIESPEKTFIPAPPNNACACNECPHMKLNTLEKLY
                     LCLQYETPELTMDEELRLAALKPIDRMLEISKAAGLLG"
BASE COUNT          892 a          782 c          771 g          981 t
ORIGIN      
        1 atgagcctgg cctgcctcta caattgcata gatgccgacc accccaaagc ttacgcggat
       61 gctaccgccg gcgaatacct cgacgagcgt ctccgggaga ttggacttaa aaaataaatg
      121 atctgacaac catacgtaga agccagcgca cctgctggct tttgtttttt gttatatcgg
      181 gctgacaaat ggcttcccta cctttgccgg cggaggcgca ggaaaaatgg ttcgaagaaa
      241 gcttttcata atggttatgg ctcttgtttg gtcactggcg ggcagcagcc aatgttctat
      301 ttgtacaaaa accgcttcac aactcggcaa gcaaagtgcc gaaggcttga atggtggcat
      361 tgtttacctc atgtttgtgc cttttctcat tggtggctac attggttatc gctggtggaa
      421 gcaggaaaaa accaacccgt cctgatcccg ttgatccggc gaagccggaa aaaatttttt
      481 ttgcgggcct atgacttcag cctgctgaat cgatactcat cgacaatctc cccgttcttg
      541 atggctcctt tcctggcaat gcaatccagg gtgaacccgt ttttggccag cacccgcatg
      601 gaagccttgt tgaaatcaaa aacactactc tgtaagcgga tgatgccagt gtgattgaaa
      661 atgtattccg ccattactga aatcgcagca gatataatcc cttttcccca gaacggttct
      721 cctatccaat atccaaaatc agcggtcaat cggtacacat cctgcatggg gtaaaagcct
      781 atcacaccga tgcaggcatc ttcgtaaatg acaccaaggt tttgctgtgt ttctctattg
      841 cattctgtcg ctatgaatga tacggcatct tctattcgat aagggtgcgg aaaataatcg
      901 cgaacatttt gccagatgcg ctcattgttg gcatattgtg ccatggactc agcatctctc
      961 ggctgcagtg ttcgcaattc gcatagtccg gcgtccaatg aaatcatcac atttctattt
     1021 tagcattatg ccaacagagg ctgagtaact ttacaaagca agatcaaaca cttcaatgga
     1081 gcattcagca gcaaggaatt tttttctttt tctactcagt acagcggcag ttttgggaac
     1141 ctacaatgct acaggacaaa aagcagtgat tgttggtgtt gttaccgaca agctgagcaa
     1201 gcagccggta cgcaccgcca gcattcgaaa catcacatca ggtaatacag tggtgagccg
     1261 gtccgcaggc cagtattcca taaccggatt gaaaggcaat atcctttcgt tttctgcaac
     1321 agggtatttt accgatacac ttaccatcac tgacagtgtg ctgcaattaa aaaaggtgga
     1381 tatagtgctt cgtccattgt cgggcacatt gccagatgta acagtaactg caaaactgaa
     1441 cccttaccag attgatagcc tggaaagaag acggaatttc ctggcactgg taggtgaatc
     1501 caaacttcct agagtgagca ctgttaatga tctgggtttt ggtgtcggaa taaacctgga
     1561 ttattggaaa aaaagagaaa gaagtaaaag aaaggccaga gagttgtttg atattaccga
     1621 agaagaagct tacatcaatt acaggtggac ggatacactg gttcataagt acagtcgcct
     1681 gaatggagat acactcattg attttatgca acaataccga cctacgtggg aatggttgag
     1741 gcaaaatgaa gaggaggaag acctggtgta ccacatcaat aaatcgctca agcaatactt
     1801 caagcgagaa aaataaaaaa gtgctccagt ggggagcact ttttttctga aggatcattt
     1861 accaaatcat actgtgtgtg ctgcaaaatg ttggcgcaca tgagcaacca tttgtcgttc
     1921 gctcatgtct tccgcagctt cattcaccat agcaatattc ttcatggttt tctcttcctc
     1981 aatcttctta ccgagtttga tgcgggtttg ggcaggtccg aaaataaata actcatctgc
     2041 acccttcagc aggctcatta cctttttcag gtagtcctcc attctctgat caaatttccg
     2101 ctcctcgttt ttttcaaagt cgataaacac attgccaacc cttgtaaaac gcttgccttc
     2161 accagcaaat ctttcattag gaactatacc cgaatcaatg gtttcaatcc ggggctcatc
     2221 ctcgttcatg ttgatgatgt atgcatggat ggtgtcaatc caaattccga tttgtttttt
     2281 catacgctgc attttttaaa gtgatcaaat ggcgccaatc ggtataccca gcaagctttt
     2341 caggcgaagc aacatttcca tttcatcatg attggtaaat cgggtgctgg aggcaatccg
     2401 cctggcactg ttcattatct tttctctcag gtagtgattg atactaccgg cattggcagc
     2461 aaaaaattgt tcaaactgac gaaatgcttt ttctggtgct gtggagtttt cttcatttac
     2521 atcaaactgg aacaaaataa tattggctgc atcggtacca tacgaatcag tgctgtcttc
     2581 caggtgtttc cagaagtatc tcaccaattc taccatagca ttcttttcag cgatggtgat
     2641 ttgtttgtct gcctttgcca ccgcataaaa aagatttccg agttgcttgt acaaagaagt
     2701 gtagctgaac atggtgacgc tttttatttg tacagaaggt acgaaatatc cagccctgct
     2761 ccaatgacaa aaggcacctc gtttcagttg aagtgccttg ttttcgccat ctgtttgaat
     2821 aggtgattat tatcccagca agcccgccgc tttacttatt tcaagcattc tgtcgatggg
     2881 cttgagtgcc gccaatcgca attcctcatc catggtaagt tcgggcgttt catattggag
     2941 gcacaagtac agtttctcca gggtattcag tttcatgtgc ggacattcat tgcatgcaca
     3001 agcattattc ggaggtgcag ggatgaatgt tttttcagga ctctcaattt gcatttggtg
     3061 caagatgccc ggttctgtag ctacaatgta agattgggcg ctgtctgatt ttgtgtattt
     3121 cagcagctgt gtagtactgc cgatataatc cgctatccgc aatacggctt cttcgcattc
     3181 agggtgggca atgaaccggg cctccgggtg acgggttttc agtttggtga tcttctcgag
     3241 gctgaaaatt tcgtgcacca tacaggcacc attccaaagc accatgttcc ggcccgtcac
     3301 cttgttgagg taggcaccca ggtttttgtc gggcgcaaaa atgatcggct ggtctgccgg
     3361 caggctgtcg ataatggcct tggcattgct gctggtgcaa ataatgtcgc tgagggcctt
     3421 catgcc
//
LOCUS       DATIQF010000084         1689 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_16725, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000084 DATIQF010000000
VERSION     DATIQF010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16725"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1031)
                     /locus_tag="VLL95_01325"
     CDS             complement(<1..1031)
                     /locus_tag="VLL95_01325"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015049.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family O-acyltransferase"
                     /protein_id="HSR37525.1"
                     /translation="MLFNSIDFAIFFPLFFLLYWFVFKRNLSSQNALILVASFIFYGW
                     WDWRFLFLLVFSSGIDFVAGYHMSNSNDPKRRKALLLISLVTNLGILGFFKYYNFFVD
                     NFVSAFTLFGLKLNVTTLKIILPVGISFYTFQSLSYTIDIYRGKLSAIKDPVVYFAFI
                     SFFPQLVAGPIERATNLVPQVMQPRVFDYNQVRDGLRQVLWGLFKKIVVADNCATFVN
                     QVFEHHAQYNGFSVAIGVAVFAFQIYCDFSGYSDIAIGSAHMLGFNLMRNFHYPYFSR
                     DVAEFWRRWHISLTTWFRDYVYIPLGGSKGSQWQSLRNTMFVFLISGFWHGANWTFII
                     WGALNAIFYV"
     gene            complement(1033..>1689)
                     /locus_tag="VLL95_01330"
     CDS             complement(1033..>1689)
                     /locus_tag="VLL95_01330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37526.1"
                     /translation="ENTRQASGVYGPYDYFNGNEGFDEAAVTFKYKYPFVEDLPPADY
                     HAIRYMGGQYFPQPTLMWRKDALWDLRGHNPSLLINQDVDLLLRACSKGMRFGSVKDA
                     GRALIRNHDLDNRVGALSTNEAKLRQILALRKKFMDVFYEKGMASREMAENTAYFFFD
                     LWKLYRVDKPHMAEMFLRYSQQLHPRLQLRGGVAIRGLSALFGPVNATIIKKKIFGRD
                     "
BASE COUNT          514 a          407 c          378 g          390 t
ORIGIN      
        1 acataaaata ttgcgtttaa cgctccccag atgatgaatg tccagttagc accatgccag
       61 aagccactga tcagaaacac aaacatcgtg ttcctcaaac tctgccactg gctgcctttg
      121 ctgccgccca gcggtatgta tacgtaatcg cgaaaccagg tagtaagaga aatatgccag
      181 cggcgccaga actctgctac atcccgagag aaatagggat aatggaaatt gcgcatcagg
      241 ttgaaaccaa gcatatgcgc agagccaatg gcaatatctg aatacccgga aaaatcacaa
      301 tagatctgaa acgcgaacac agccactccg atggccactg aaaaaccatt gtactgtgca
      361 tgatgttcga atacctggtt tacaaacgtg gcacaattat cagctaccac tatttttttg
      421 aataatcccc atagcacctg gcgcaatcca tcacgcacct ggttgtaatc aaataccctt
      481 ggctgcatta cctgcggcac caggttggta gccctttcaa tggggcctgc taccaattga
      541 gggaaaaagc tgataaaggc gaaataaaca accgggtctt ttatggcgct caatttgccc
      601 cggtaaatat caatggtata actcaacgat tggaaggtat agaagctaat gccaaccggg
      661 agtatgatct tgagcgtggt tacattaagc ttcaggccaa atagagtgaa tgcgcttaca
      721 aagttgtcaa caaaaaagtt gtagtacttg aagaaaccaa gaatgccaag attggtaacc
      781 aggctgatga gcaatagcgc tttccttctt ttggggtcgt tggagttcga catgtggtag
      841 cccgccacaa agtcaatgcc tgaactgaaa accaaaagaa acagaaaacg ccagtcccac
      901 cagccgtaga aaatgaaact ggcaaccagg atgagagcgt tctgactgct gagatttcgt
      961 ttgaatacaa accaatacag cagaaagaat aagggaaaga agattgcgaa atcaatggaa
     1021 ttgaaaagca tgtcagtctc ttccgaaaat tttcttctta ataatagtag cgtttacagg
     1081 gccaaaaaga gccgataagc ccctgatggc cactccaccc ctaagttgca gcctggggtg
     1141 cagctgctgc gaatatcgta aaaacatttc agccatatgg ggcttatcaa cccggtaaag
     1201 tttccagagg tcgaaaaaga agtaggcggt gttctcagcc atttccctgg aagccattcc
     1261 tttttcataa aaaacatcca tgaatttctt tcgcaaggcc agtatctggc gcagctttgc
     1321 ctcattggta gatagcgctc ctaccctgtt atcgagatca tgattacgga tcaaagccct
     1381 gccggcgtct ttcaccgacc caaagcgcat gcccttggag caggcacgca gcaataaatc
     1441 aacatcctgg ttgatgagta acgatggatt atggccacga aggtcccaca gcgcatcctt
     1501 tcgccacatg agggtgggtt gtggaaaata ctggccaccc atgtagcgaa tggcatgata
     1561 atcggcaggt ggcaaatctt ccacaaacgg atacttgtat ttaaaagtca ccgccgcttc
     1621 gtcaaaccct tcgttaccat taaaatagtc atacgggcca tacacgcccg aagcctgcct
     1681 ggtgttctc
//
LOCUS       DATIQF010000085         3772 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_77563, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000085 DATIQF010000000
VERSION     DATIQF010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3772
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77563"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..339)
                     /locus_tag="VLL95_01335"
     CDS             complement(<1..339)
                     /locus_tag="VLL95_01335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37527.1"
                     /translation="MAFSIRKLGKRFFILTNALVCLLFLLACLQPWLNPISFWPISFL
                     SLTLPYLTLLVLAFLVFWLLVRFRYALISLLTLILGWKQVGTLFATQSDVFAVKTRKE
                     NSLRVMTWNVK"
     gene            complement(416..1546)
                     /locus_tag="VLL95_01340"
     CDS             complement(416..1546)
                     /locus_tag="VLL95_01340"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HSR37528.1"
                     /translation="MAARRSHRILRILAWTLLSLALTIYLPSLLLYSIHPGHWWVMGI
                     LSIGFPYTWLGMTAVVVLAFWLHRKAGWILLLGWAAGWPIMRNVWALNSTQDFPTASS
                     QQSLRVMQWNCMELSGSLQNDSTRQVRQQVAALLRKHQPQVLLLQDFQEITSPRHYSN
                     IAFLRDTLGYRYMLLAPYYTVEAGWGKVQEGSAIFSKIPIDTAGHIMYEGRPVSEQIA
                     WADIRFRGKTLRCVSTHLLSMNLNTPKGQPDPLYYYQRPDSAVITSGDVLRKLRHYQP
                     YHVRQAKQLRHFLDTSAHPLVLGIDMNSVPSSWVYRHISRGLQDVFLATGRGWGRSYH
                     SRLPNLRIDYLFTGPALATPHAITIPVSFSDHYPVLADLQWR"
     gene            complement(1559..2482)
                     /locus_tag="VLL95_01345"
     CDS             complement(1559..2482)
                     /locus_tag="VLL95_01345"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HSR37529.1"
                     /translation="MGVLPKRKRNTLLLGDDSNALIGLIAINAMAFVIINFIKIGYFL
                     SGLELEAFYRNVLAWLLVPANPESLLNRPWSVFTYMFSHEGVWHMISNMLWLWAFGFI
                     LQDLAGNRHLAPLYLYGGWVGAAMFLLTINIFPVLQQAKDSIAPLQGAGAAIMAVAVG
                     TTALAPNYRIFPMLNGGIPLWVLTLVFVLVDYALIASVGAGTAVAHLAGGAVGLLYIR
                     ALQRGANWGEWMHQLYHWFFTLFDPKKPNRQQAKQKLHYKAGPVEPFRSKPHVTEQRI
                     DEILDKINTQGYHMLTDEEKEYLKRASNEDL"
     gene            complement(2576..3433)
                     /locus_tag="VLL95_01350"
     CDS             complement(2576..3433)
                     /locus_tag="VLL95_01350"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HSR37530.1"
                     /translation="MTQFRPGSFQILPVIIKNLLIINGLVFMAQLTFDGVMPGTDLAP
                     RVGSVTDTFALHHLFSPLFRPWQLLTHMFMHGSLMHIFSNMFALWMFGSILENLWGPK
                     RFLMFYLVCGMGAALLHLGFLWYENHQLLVDFENFREAPSLDAYVRFYNTYNLAQGYD
                     GNQAFRIGRSWEMDPTNLQFADQAIMVVTDHVNRSLSEATLGASGAVFGCLAAFGFLF
                     PNTYIYLYFFVPIKAKWFVLLYIAFELSMAVRNSAGDNIARWAHLGGALVGFLLVYFW
                     NKQNRRTFY"
     gene            complement(3576..>3772)
                     /locus_tag="VLL95_01355"
     CDS             complement(3576..>3772)
                     /locus_tag="VLL95_01355"
                     /inference="COORDINATES: protein motif:HMM:NF017743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37531.1"
                     /translation="EKLVRKILDMAAPTVVYVSCNPATQARDLRLLAEKYEVTKAQPV
                     DMFPHTYHIENVVQLKLKNA"
BASE COUNT          853 a          931 c         1191 g          797 t
ORIGIN      
        1 ttttacgttc caggtcatta ccctcaggct gttttctttc ctggtcttga cggcaaaaac
       61 atcgctttgt gtggcaaaaa gggtgcccac ctgtttccat cccaaaatga gcgtgagcag
      121 cgagatgagg gcatagcgga accgtaccag cagccaaaag acaaggaagg ccaacaccag
      181 cagggtgagg taaggcaggg tgaggctgag gaaactgatg ggccagaagc tgatggggtt
      241 gagccagggc tgcaggcagg ccagcaaaaa caggaggcaa accaatgcat tggtcaggat
      301 gaaaaatcgt ttgcccagtt tgcggatgct gaatgccata ttgcggttac cgggttgaaa
      361 ttacagggaa ggaattttat aacctgcagg agcccctgct taaagttgcc cacagtcacc
      421 gccattgcag gtcggccagc acggggtaat ggtcggaaaa tgagacagga atggtgatgg
      481 catggggggt ggccagtgcc gggccggtga ataaataatc gatgcggagg ttgggcaggc
      541 gactgtggta gctgcggccc cagccccggc cagtggcgag aaaaacatcc tgcaggccgc
      601 ggctgatgtg gcggtacacc caggaggagg gaacgctgtt catatcgatg cccagcacca
      661 gcgggtgggc ggaggtatcg aggaaatggc gcagctgctt cgcctgccgg acatggtagg
      721 gctggtagtg gcgcagtttg cgaagcacgt caccggaggt gatcaccgca ctgtcggggc
      781 gttggtagta atacagggga tcgggctggc cctttggggt attgaggttc atgctcagca
      841 ggtgggtgct gacgcagcgc agtgttttgc cgcggaagcg gatatcggcc caggcgattt
      901 gttcggatac cggccgtcct tcatacatga tatgaccggc agtatcgata gggattttgg
      961 aaaagatggc ggagccttcc tgtaccttgc cccagccggc ctccaccgtg tagtagggtg
     1021 ccagcagcat ataccggtag cccagcgtgt cgcgcagaaa agcgatgttg gaataatgcc
     1081 gggggctcgt gatttcctgg aaatcctgca gcagcagcac ctgtggctgg tgcttgcgga
     1141 gcagggctgc cacctgctgg cgcacctgcc gggtgctgtc gttttgcagc gagccgctga
     1201 gttccatgca attccattgc atcacccgaa ggctttgctg cgaggaagcg gttggaaaat
     1261 cctgtgtgct gttcagcgcc catacgttgc gcatgatggg ccagccagcc gcccagccca
     1321 gcagcaggat ccagccggct ttccggtgca gccagaaggc cagcaccacg accgccgtca
     1381 tgcccagcca ggtgtaaggg aagccgatgg acaggatacc catcacccac caatggccgg
     1441 ggtggatgct gtacaacaat aaagaaggca ggtaaatggt caacgccagg gaaagcagtg
     1501 tccatgccag gatgcggagg atgcggtgag agcgccgggc tgccataatg attgagccct
     1561 acaggtcttc gttgctggcc cgtttgaggt attccttctc ttcatcggtg agcatgtggt
     1621 acccctgtgt attgatcttg tcgaggatct catcgatgcg ctgctcggtc acatgcggtt
     1681 tggagcggaa gggctccacc gggcccgctt tgtaatgcaa tttctgtttg gcttgctgcc
     1741 ggttaggctt tttcgggtcg aacagggtga aaaaccaatg gtacagctgg tgcatccatt
     1801 cgccccagtt ggcccccctt tgcaaggccc ggatgtacag gaggcccact gcgccaccag
     1861 ccaggtgggc cactgccgta ccggctccta cactggctat gagggcataa tccaccagta
     1921 caaacaccag ggtaagcacc cacaggggga tgccgccgtt cagcatgggg aagatgcgat
     1981 agttgggcgc cagcgccgta gtccctaccg ccacggccat gatagcagcc ccggcaccct
     2041 gcaagggagc gatgctgtct ttcgcctgct gtagtacagg gaaaatatta atggtcagca
     2101 ggaacatagc cgctcctacc cagccaccgt agaggtagag tggcgccagg tggcggttgc
     2161 cggccaggtc ttgcaggatg aaaccaaagg cccaaagcca gagcatgttg ctgatcatgt
     2221 gccatacgcc ttcgtggctg aacatgtagg tgaataccga ccagggccga ttgagcaaac
     2281 tttcggggtt ggcgggtacc agcagccatg ccagcacatt gcggtaaaag gcttcgagtt
     2341 cgaggccgct gaggaaatag ccgatcttga tgaagttgat gatgacaaat gccatggcgt
     2401 tgatggcgat cagcccaatc aacgcattgc tgtcatcgcc cagtaacagg gtgtttcgtt
     2461 ttctttttgg cagcactccc ataatgcaat gttctttttt agcgtgacgg tgtgtatgtt
     2521 ttcactgcgc ctggcggcgc ttcctaaagt tattgtgttt tcagaacggt tgggatcagt
     2581 aaaaagttcg tcggttttgt ttgttccaga aatagaccag caaaaaacca acgagggccc
     2641 cgccgaggtg cgcccaccgg gcaatattgt cgccggcgct gttgcgcacc gccatgctca
     2701 gttcgaaggc gatgtagaga agcacgaacc atttggcttt gatgggcacg aagaagtaga
     2761 ggtagatgta ggtattggga aagaggaaac cgaaggcggc gaggcagcca aacacggccc
     2821 cactggcgcc gagggtagct tcgctcagtg atctgttcac gtgatcggtc accaccatga
     2881 tggcctggtc ggcaaattgg aggttggtag ggtccatctc ccacgacctt ccgatgcgga
     2941 aggcctggtt gccatcatat ccctgggcaa gattgtaggt attgtagaag cggacatagg
     3001 cgtccaggga gggtgcttct ctaaagttct caaagtccac cagcagctgg tggttttcgt
     3061 accacaggaa tcccaggtgc agcagcgcgg cgcccatgcc gcataccagg taaaacatca
     3121 ggaaacgttt gggtccccag aggttttcga gaatgctgcc gaacatccag agggcaaaca
     3181 tattgctgaa gatgtgcatg aggctgccat gcatgaacat gtgggtcagc aattgccagg
     3241 gcctgaacag gggcgaaaac aaatggtgca gggcaaaggt gtcggtcacg ctgcccactc
     3301 gcggcgccag gtcggtgccg ggcatcaccc cgtcgaacgt gagctgggcc atgaagacaa
     3361 ggccattgat gatgagcagg ttctttatga taaccggcag gatctggaaa ctgccgggtc
     3421 tgaattgtgt catagctgga gcaacaatga tggtaacggt ttgcgaagta cgagtaaatg
     3481 ggtgagactg ggagaatatg aaaatctaaa atgaatgagg attgatgaat taggaatgat
     3541 gaattgggat tgggggaagg aggctgcttt ccaagtcatg cattcttcag tttcagctgc
     3601 accacgttct caatatggta ggtatggggg aacatgtcga ccggctgggc tttggtgacc
     3661 tcgtattttt cggccaggag gcgcaggtcg cgggcctggg tggcggggtt gcagcttacg
     3721 tataccacgg tgggcgctgc catgtcgagg atcttgcgca ccagtttttc gt
//
LOCUS       DATIQF010000086         2396 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_229629,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000086 DATIQF010000000
VERSION     DATIQF010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2396
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229629"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1134
                     /locus_tag="VLL95_01360"
     CDS             <1..1134
                     /locus_tag="VLL95_01360"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aspartate aminotransferase family
                     protein"
                     /protein_id="HSR37532.1"
                     /translation="EEHESYFNAVSPPIIQTSNFLFESVDEMRKAFAAEYDVFLYSRG
                     NNPTVEILKEKIAALDGAEDALVFNSGASAIFCAVLPFVKSGDHIVSVKAPYTWAQRM
                     FEVILPRFGVSHTYIDGTDIAHWEAATQANTVLYYLESPNSWTYELQDLAAVAALAKS
                     RNIVTIIDNSYCTPLYQRPLDFGIDLSLQSATKYLGGHSDTVAGVLSGSKAHIEKIFY
                     SEYMTTGAGATPFHAWLLLRGLRTLPIRLERVTRTTHAMVAWLKQQPWVESVIFPMDE
                     DFPQLALAKKQMQNACGLLTLHVKANTVNQIETFCNSLQRFRMAVSWGGHESLVIPKC
                     AGMPRDDFDAENPVHRQIRMYVGLEEIDVLCNDLQQAAINASM"
     gene            1284..>2396
                     /locus_tag="VLL95_01365"
     CDS             1284..>2396
                     /locus_tag="VLL95_01365"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSR37533.1"
                     /translation="MRKLLFLLSTVWMVNQLQAQEKWDLRRCVEYAINNNISVKQNVV
                     QERLAQLTYLGSRDSRWPSASFSGTYGEQFGRNIDPTTNQFTTNAITFANVGVNAGAT
                     LFNWFRVKNTIDANKLSLAATEAQTKKLQEDIALNVAAAYLQALLTHQQKLTAEVQAA
                     QTNEQLQFTRKRVDAGALPELNAAELEAQLARDSATVITAESNYQLNLLQLKALLNLD
                     ASYPFDIATPDIREFPVSPLSELQPADVYLTAVGLRPSQMVNVYRLEAAKKNAKVAKA
                     AMYPSFDAFGGLQSLYSSAFKFLPDGPNTQVVVPTTDFVTVGGNRYFVNTIVNAPEKF
                     GRRRGHGGIWDTFVHAGRVPRVPSTARERADGDVLQF"
BASE COUNT          587 a          687 c          615 g          507 t
ORIGIN      
        1 gaagaacacg aatcgtattt caacgcggtt tcacccccca ttatacaaac cagcaatttc
       61 ctgtttgaat cggtggatga aatgcgcaaa gcgtttgcgg ctgaatacga tgtgtttctc
      121 tacagccgcg gcaacaaccc tacggttgag atcctcaaag aaaaaattgc agccctcgat
      181 ggagctgaag atgccctggt gttcaacagc ggggcctctg ccattttctg cgcggtgttg
      241 ccatttgtaa aaagcggcga ccacatagtg agtgtgaaag cgccttacac ctgggcgcag
      301 cggatgttcg aggtgatatt gccacgcttt ggagtgagcc atacttacat cgacggaacc
      361 gatattgccc actgggaagc ggccacgcag gccaacacag tgctgtatta cctcgaaagc
      421 cccaacagct ggacctatga gttgcaggac ctggcagccg tggctgcact ggccaaaagc
      481 cgcaacatcg tcaccattat cgacaacagc tattgtaccc ccttgtacca gcggcctttg
      541 gattttggca tcgacctttc gctgcaaagc gccaccaaat acctgggtgg gcacagcgat
      601 accgttgccg gcgtactcag cggcagcaaa gcccacattg aaaaaatatt ttacagcgaa
      661 tacatgacca ccggcgcagg cgccactccg tttcatgcct ggctgttgtt gcggggattg
      721 cgcacccttc ccatccggct ggaacgggtg acccgcacta cgcatgccat ggtggcctgg
      781 ctgaaacaac agccctgggt ggaatcggtg atctttccga tggatgaaga ctttccgcaa
      841 ctggcactgg caaagaaaca aatgcaaaat gcctgcggct tgcttaccct gcacgtgaaa
      901 gcaaacaccg tgaaccaaat agaaaccttc tgcaactcgc tgcaacgttt tcgcatggca
      961 gtgagctggg gcggacacga aagccttgtc attcccaaat gcgccggtat gccccgcgac
     1021 gattttgacg ccgagaaccc tgtacaccgc cagatcagga tgtacgtagg actggaagag
     1081 atagatgtgc tttgcaacga cctgcaacaa gccgccatca atgcgagcat gtagcaccac
     1141 cgcctttttt ccccggtact tagcctcgtt ccagccgttt tgctcaccca caaattcatc
     1201 aggcattttg cacgctgaga tggggtagcg gccacttatc ccaaaacatt cgccaatggt
     1261 ggtgacgggc ctacatttgc ggcatgagaa aattattgtt cctgctttca accgtttgga
     1321 tggttaatca actgcaggcc caggaaaaat gggatctccg ccgctgcgtg gagtatgcca
     1381 ttaacaacaa tatttcggta aagcaaaatg tggttcagga acgtctggcc cagcttactt
     1441 atttgggaag ccgcgacagc cgctggccat ctgcatcctt cagtggcaca tatggtgagc
     1501 agttcggtcg aaacatcgat cctaccacca accagtttac caccaatgcc atcacttttg
     1561 ccaacgtggg cgtaaatgcc ggggccacgc ttttcaactg gttcagggta aaaaacacga
     1621 ttgatgccaa caaactgtca ctggctgcca ccgaggcaca aaccaagaag ttacaggaag
     1681 acatcgccct caatgtggct gctgcctacc tgcaggcctt gctcacccac cagcaaaagc
     1741 tcaccgccga agtgcaggct gcacagacca acgaacaact ccaattcacc cgcaaacggg
     1801 ttgatgccgg agcgttgccc gaactgaatg ccgctgaatt ggaagcacag ctggccaggg
     1861 acagtgccac agtgatcact gctgagagca attaccagct caacctcctc cagctgaaag
     1921 ccctgctcaa cctggatgcc tcctaccctt ttgatattgc cacgcccgat atcagggaat
     1981 tcccggtttc gcctttgtca gaactgcaac cggcggatgt atacctcaca gccgtaggat
     2041 tgcgtccctc ccaaatggtg aacgtatacc gcctggaggc ggccaaaaag aatgcgaaag
     2101 tggccaaggc cgccatgtat ccgagcttcg acgcttttgg cggactgcag tcattgtatt
     2161 ccagcgcttt caagtttttg cctgatggcc ccaatacgca ggtagtggta cccaccaccg
     2221 atttcgtgac cgtgggaggc aaccgctact ttgtgaatac catcgtaaat gcaccggaga
     2281 aattcggacg gcgacgcggg cacggcggaa tctgggacac gttcgtgcac gccgggaggg
     2341 tgccccgcgt accgtcaacg gcccgggagc gcgcggatgg cgacgtcttg cagttc
//
LOCUS       DATIQF010000087         5043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_16767, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000087 DATIQF010000000
VERSION     DATIQF010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5043
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16767"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..416)
                     /locus_tag="VLL95_01370"
     CDS             complement(<1..416)
                     /locus_tag="VLL95_01370"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF012678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HSR37534.1"
                     /translation="MIGKTAKVFYYRLYQNVFKLVMPLMPWRKPELLEGPGSIKRVPE
                     ILARLKINNVLIVTDGMLMKLGLLDGLMQALKDHGCQYAIYDKTVPDPTIENVEEALQ
                     MYHQQGCKAIIAFGGGSPMDCAKIVGARVARPGKAIA"
     gene            complement(511..939)
                     /locus_tag="VLL95_01375"
     CDS             complement(511..939)
                     /locus_tag="VLL95_01375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37535.1"
                     /translation="MRLFIANFKWVMVICGLLTCTMLLGLFSPDQWLHDNLGESLTTG
                     PENLAIRGWMALIGLMGIMLIYGGFHLPVRNYSLVIAGTNKIILIVLASVYGKAYLSF
                     GLGTAVVADAVMVVLFALYLLMARQNKQTAAGQQPLYVSK"
     gene            complement(1084..3483)
                     /locus_tag="VLL95_01380"
     CDS             complement(1084..3483)
                     /locus_tag="VLL95_01380"
                     /EC_number="3.1.6.-"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arylsulfatase"
                     /protein_id="HSR37536.1"
                     /translation="MKKRFSPLLMLPGFLLVMACGNKANETQSNVGADGIDRTVLPIK
                     EPARKRYTELDVRNTTPPPRFEVKAPKDAPNVVVILLDDMGYAVPETFGGPAHMPTLD
                     RLAKNGLTYNRFHTTALCTSTRAALLTGYNPHSANLGIITELATTYPGYTSVMPQSVT
                     PMAEVLRQNGYNTAQFGKSHETPTWEKSSNGPQDRWPTRMGFEKFYGFLGGITNNWAP
                     VIYDGVTMIETPKYPGYHFTNDMTNQAISWVQRQQALQPDKPFFMYYAPGATRAPHHA
                     PKEYSDKYKGKFDEGWDVLRAKTLERQKKLGIVPQNTQLAPKPKEIQDWANLSPLEKK
                     MFARQMEVYAGFAEHTDHEIGRVVDAIEEMGELDNTIIFFIAGDNGSSAEGQQTGLFN
                     EWTYFNRVKENVEDMMKYYDEWGLENTNPHMASGWAVATNSPFQWTKQVASDFGGTRN
                     GMVVHWPKGIKSKGQLRSQFGYVIDVAPTIYEVTGIPSPKMVNGIAQDPIEGTSLVYS
                     FDNGTAPEQHTVQYFEIGGNRSIYQDGWYARTIHSAPYLPEPYNTLQNDVWELYNTKE
                     DFSLANDLSKKEPKRLKDMQALFMKEAEKYHVLPIDDRSVERMIAEVAGRPTLLQGRT
                     SMTLTRDMRNLAVDVFINLQNTSYTITADVEIGPGGNGVMVCQGGRFGGLSFYMKNGK
                     PAFTYNFLGLSSSSIVAGQPLSPGKHTIVFDFKYDGGGPGRGGVGVIMVDGQKAGEGR
                     IERTQPGVFSVVDLADVGVDLGTPVADYGNESKFNGTIQKVTVQRNADNTKSGTPSVI
                     D"
     gene            4084..>5043
                     /locus_tag="VLL95_01385"
     CDS             4084..>5043
                     /locus_tag="VLL95_01385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37537.1"
                     /translation="MEILLDWKNIAYLFSQFIGYLVGLALIISGIRGRKSNIFLGFNF
                     LFLTYSSFIIWLITTGYFVEFPRLYRTGNFTGLLFIPLMFLYIRHEITKKPFSFFWTL
                     VHLLPALVFLVDFWPIYTLPVEEKLRLIKSEIADPTLFTQFSQSRFFPANFYTPFRSL
                     LNAAYWLLSVYWVRVGARSTSNSKFAKEWFVWIWIFLGLQSMVFLPALLLKWMITPLA
                     AYYLAHLSIVLLNLVTGVSLLFFPKLLYGLDKERYEEKQQTRRSKTEMLDQLSGNKIE
                     EIRTVLDRVLCQEKKYLRKGYTIADLSKDTGIPSYLLTFYINKN"
BASE COUNT         1176 a         1297 c         1170 g         1400 t
ORIGIN      
        1 gctattgcct tgccgggtct tgccaccctg gcacctacaa ttttggcaca atccatggga
       61 gagccaccac cgaatgcgat aatggcctta cacccctgct gatgatacat ttgcagcgct
      121 tcttccacat tttctatggt ggggtcggga acggttttgt cgtaaatggc gtattggcag
      181 ccatggtctt tgagagcctg cataaggcca tccaacaaac ctagcttcat aagcatgcca
      241 tccgtcacta tcaacacgtt gttgatcttt aacctcgcca atatttcagg aacccgttta
      301 atactacctg gcccttccaa caattcaggc ttgcgccatg gcatcaaagg cattaccagt
      361 ttaaagacat tttgatagag cctgtaataa aatactttgg ccgtttttcc gatcatcgaa
      421 ctttgctgtt ttgttgtttg tgttcaattc tgtttctata caaaagctgc tgccgcaatg
      481 aaaaaaagca gcagcaattg ctttctattc tcattttgaa acatacagag gctgctgccc
      541 ggcggcggtc tgcttgtttt gccttgccat aagcaggtat aaggcgaata acaccaccat
      601 tactgcatca gctaccaccg cagtgcccag cccgaacgac aggtatgcct tgccatatac
      661 agaagccagt actatcaaaa tgattttgtt ggtccctgct ataaccagcg aataattgcg
      721 gacaggcaaa tggaacccgc catagataag catgatgccc ataagtccaa tcagcgccat
      781 ccacccgcgt atggccaggt tttccggacc ggtggtcagc gattcaccca aattgtcatg
      841 aagccattgg tcaggtgaaa acaaacctag cagcatggtg caggtgagca agccgcaaat
      901 gaccatcacc cacttgaagt tcgcaataaa aagacgcatg acaacaaccc cgttttttgt
      961 tggatttatt ggagtgaaag ggggaagaat ttcaacagac actttctgca agcgctatga
     1021 aattcttccc gtatttcaat gaatagaatt ttgccgccgg gtttctgcaa cccatcgtgc
     1081 gacttagtca attacggacg gcgttccgct tttggtattg tctgcatttc gttgcaccgt
     1141 cactttttga atggtaccat tgaacttgct ttcattgcca tagtcggcta ccggtgtgcc
     1201 aaggtcaacg cccacatcgg ccaggtcaac taccgagaac actccgggtt gggtgcgctc
     1261 tattcggcct tcgcctgcct tttgcccgtc taccataatc acacctaccc ctcctcttcc
     1321 gggtcctccg ccatcatact tgaaatcaaa tacgatggtg tgtttgccag ggctcaatgg
     1381 ctggccggct actatggatg atgaggacaa gccgaggaaa ttataggtaa aggcgggctt
     1441 tccatttttc atatagaagg acaatccgcc aaagcggcca ccctggcata ccattacccc
     1501 attgcctccg gggcctattt ccacatcagc tgtaatggta taagaggtgt tttgcaaatt
     1561 gatgaacaca tccaccgcaa ggtttctcat gtcacgggtc agcgtcatcg aagttctgcc
     1621 ttgtaataaa gtgggcctgc ccgccacctc ggcaatcatg cgttcaaccg atcggtcgtc
     1681 tataggcagt acatggtatt tttccgcctc tttcataaac agggcttgca tatccttcag
     1741 ccgctttggc tcttttttag aaaggtcgtt ggccaggctg aaatcttcct tggtgttgta
     1801 caattcccat acatcatttt gaagggtatt gtagggttcg ggcagatagg gcgctgagtg
     1861 aatggtacgg gcataccagc catcctggta tatggaccgg ttgccaccaa tttcaaaata
     1921 ctgcacggtg tgctgttcgg gcgccgtccc gttgtcaaag gaataaacaa ggctcgtgcc
     1981 ttcaatggga tcctgggcaa tgccattcac cattttgggt gaaggaatgc ccgtgacttc
     2041 ataaatggta ggggccacat ctatcacata gccgaattgg cttctcaatt gccccttgga
     2101 cttaatgcct ttgggccagt gcaccaccat gccattgcgg gtgcctccaa aatcggatgc
     2161 tacctgcttg gtccattgaa aaggtgaatt ggtagctact gcccaacccg aagccatatg
     2221 agggttcgtg ttttccagac cccattcatc ataatacttc atcatgtctt ccacgttctc
     2281 ttttacccgg ttgaagtagg tccattcgtt gaacaggccg gtttgctgcc cttccgcact
     2341 ggacccattg tcgccggcga taaagaatat gatggtattg tccagttcgc ccatttcttc
     2401 aatggcatcc actacccggc ctatttcatg atcggtgtgt tccgcaaaac cggcatatac
     2461 ttccatctgc cgggcaaaca ttttcttttc cagcggagaa agattggccc agtcctggat
     2521 ttcttttggt ttgggggcca attgcgtgtt ttgaggaaca atgcccagtt ttttctggcg
     2581 ctccagggtt ttggctctca gcacatccca accctcgtca aattttcctt tgtacttatc
     2641 agagtactct ttaggagcat ggtgcggggc acgggtagct ccgggggcat aatacatgaa
     2701 aaatggcttg tcgggctgca aggcctgctg tcgctgcacc catgaaatag cctggttggt
     2761 catatcattg gtgaagtggt aaccagggta tttgggggtt tcaatcatgg taacaccatc
     2821 gtaaataact ggcgcccaat tgttggtaat accacccaaa aagccataaa acttttcaaa
     2881 acccattcgg gtgggccagc ggtcctgggg tccgttgctt gatttttccc aggttggggt
     2941 ttcatggctc ttgccaaact gcgcagtatt gtacccgttt tggcgcagca cctcagccat
     3001 cggagtaacg gactggggca ttacagaagt atatcccgga tacgtggtgg ccagttcagt
     3061 gatgatgcca aggttggccg aatgcgggtt gtaaccggta aggagagcgg cccgggtaga
     3121 ggtacaaagg gccgtggtat gaaagcgatt gtaggtcagc ccgttcttag ccaggcggtc
     3181 aagggtaggc atgtgtgccg ggccaccaaa ggtttccggt acggcatatc ccatatcatc
     3241 caataagatc actaccacat tgggggcatc cttgggagcc ttcacttcaa agcggggcgg
     3301 cggagtggta ttacgcacat ccagctctgt ataccttttc cgggcaggtt ccttaatagg
     3361 caggacggtt cggtcgatac cgtctgctcc aacatttgat tgtgtttcgt ttgctttgtt
     3421 tccgcatgcc atcaccagca gaaagcctgg cagcatcaga agtggggaga agcgcttttt
     3481 cattttctag gtatttaacg gctgattgat gacatatttc tatggtgtgc tggcagggct
     3541 gcacgccaac aggtaaaatc ggcgtgcttg tgttagcaat ggtcagtcgt gtgataaggc
     3601 gactctttcc ccccaatcct gtaaccccaa acttcacctg cacatcctct taatacagcc
     3661 caggaatgga cgcccggcca aaaagagggg aactttcacg actgattaaa tttagagtca
     3721 actgcaacgg ctatatcggc tgctataaac cggaatgcac ctattcttgg aatttttgca
     3781 taaaagccgc cgggatttct tgcccaacaa gggtcagatt ttagtgctca aactttagtt
     3841 gctgccactt ctattgcttt agaacctttc cctccattaa ctgttgctat gaaaataatt
     3901 tgtatgaacc cggcctcagc atctgccatg tttcccggaa tcttgctccc catcccaccc
     3961 tccagggcgc tgccagtgcc ggcgcgtttt attggctccc gatccgttga ttgtaatcct
     4021 gacgcatcct taaaataagt actttgcagg ctcctgctca acccgttcta ctagccccct
     4081 tgtatggaaa tcttactcga ttggaagaat atcgcctatt tgttcagcca gtttattggc
     4141 tacctggtag gcctggcttt gattatttca ggaataagag gaagaaagag caatatcttt
     4201 ttaggattca acttcctttt tctcacctat agctctttta tcatctggct gatcaccacc
     4261 gggtattttg ttgaatttcc gcgactgtac cgaaccggga attttaccgg ccttttgttc
     4321 atcccgttga tgtttttgta catccggcac gagatcacga aaaagccttt ctcctttttt
     4381 tggacattgg tccacctgtt gcctgccctg gttttcctgg tggatttttg gcccatctat
     4441 accctgccgg tcgaagaaaa actcaggctc ataaaatctg agatagccga cccaacgctt
     4501 ttcacgcagt tcagccagtc gcgttttttc ccggccaatt tttatacccc gttccgctcc
     4561 ctgctgaatg ctgcctattg gctcctgtcg gtatactggg tcagggtcgg tgcccgaagt
     4621 acttcgaaca gcaagtttgc caaagaatgg tttgtatgga tctggatttt cctggggctt
     4681 cagtcgatgg tttttctgcc cgcccttttg cttaaatgga tgattacccc gctggccgct
     4741 tattacctgg cccacctttc cattgtactg ctgaaccttg taaccggtgt ttccctgctg
     4801 tttttcccca aactgctgta tggactggat aaagaacggt atgaagaaaa gcagcaaacc
     4861 cgccggtcaa aaaccgaaat gctcgaccaa ctttccggca ataagatcga agagatcagg
     4921 accgttcttg acagggtact ttgccaggaa aaaaaatacc tccggaaagg ctataccatt
     4981 gccgaccttt ccaaagacac cggcataccg agctacctgc tcactttcta tatcaataaa
     5041 aac
//
LOCUS       DATIQF010000088         2452 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_123265,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000088 DATIQF010000000
VERSION     DATIQF010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2452
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123265"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..686)
                     /locus_tag="VLL95_01390"
     CDS             complement(<1..686)
                     /locus_tag="VLL95_01390"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR37538.1"
                     /translation="MSKPSVIVTAKCHPWLIDKLDENFAVDFRPNISHDELKQAVADA
                     VGLIVTTRLKIDKEIIDAADNLQWIGRLGSGLELIDVAYAESRGIKVVSSPEGNRNAV
                     AEHALGMLLSLLNKLHTSFDEVKQGQWIRDANRGTELYGKTVGIIGYGNTGSQFAKLL
                     KPFEVTVLAYDANRFGFGGDHVKEASLEQVRRYADVISFHVPLNDDTYHMGNKDFFFE
                     LPQKSIILNTS"
     gene            complement(696..1469)
                     /gene="rsmA"
                     /locus_tag="VLL95_01395"
     CDS             complement(696..1469)
                     /gene="rsmA"
                     /locus_tag="VLL95_01395"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: protein motif:HMM:TIGR00755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HSR37539.1"
                     /translation="MQYTLKKSLGQHFLHDENMCRKIVAALQERPFSQLVEIGPGGGA
                     ITKYLLQIPGVNFKVVEIDDEKVAYLAKTYPELAAKIIHESVLDTDVPFEGQFTLIGN
                     FPYNISTEIVFKVLDWKAQVECVIGMFQKEVAQRLASKPGSKIYGVTSVLTQAFYDVQ
                     YLFDVPPGCFNPPPKVMSGVIRMTPVANPVSMRSEKDFRMLVKAAFNQRRKQLRNAVR
                     AFFDEATLQDDIFNKRAEQLGISDFAALTFRMHGKGSAV"
     gene            1601..>2452
                     /gene="pdxA"
                     /locus_tag="VLL95_01400"
     CDS             1601..>2452
                     /gene="pdxA"
                     /locus_tag="VLL95_01400"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: protein motif:HMM:TIGR00557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HSR37540.1"
                     /translation="MTEIQKPIVGFSCGDINGIGPEIIIKALADSRMLEFCTPVIFAS
                     NKTINFYRKAVSDSNFQYQSLKEFSKLNPKMVNIFNCWEEEVAINPGQLNEIGGAYAK
                     KSLIAATEALKAGHIHALVTAPIHKSNVQGDDFSYSGHTPYLKDAFGVPEVVMLMVAD
                     NMRVALLSEHVPLKDAAQNVTRENILKKLNVMVTSLQKDFGIDKPKIAVLALNPHAGD
                     EGLIGKEEEEIIKPAVKEARQRGMLAFGPYPADAFFARGQHEKFDAVLAMYHDQGLIP
                     FKSLSLGE"
BASE COUNT          633 a          624 c          602 g          593 t
ORIGIN      
        1 gatgtattga gaataatgga cttttgaggc agctcaaaaa agaaatcctt gttacccatg
       61 tggtaagtgt cgtcgttgag tggcacgtga aaactgatca catcggcata gcggcgtacc
      121 tgctccagcg aggcttcctt cacatgatcc ccaccaaatc caaaacgatt ggcatcataa
      181 gcgagaacgg tgacttcaaa gggcttcagt agtttggcga attgcgaacc ggtatttcca
      241 tagccgatga tgcctaccgt ttttccatac aattcagtgc cacggttggc atcgcggatc
      301 cactggccct gttttacttc atcaaaactg gtgtgcagtt tattgagcag gctcagcaac
      361 atgcccaatg catgctcggc cactgcgttg cgattgcctt ccgggctgct aaccaccttg
      421 atgccgcggc tttcggcata ggctacgtct atcagttcaa gaccgctgcc aaggcgacca
      481 atccactgca ggttgtcagc agcgtcaatt atctctttgt cgattttcag ccgggtggtc
      541 acaatcaaac ccactgcatc ggccactgcc tgcttcagtt catcatggct gatattgggt
      601 cgaaaatcaa cagcaaagtt ttcgtcgagt ttatcaatca accacgggtg acatttggca
      661 gttacaatta cggaaggctt gctcatagga aattcttaga cggcagatcc cttgccatgc
      721 atgcggaaag tgagggcagc aaaatcagaa atgcccagtt gctcggcccg cttgttaaaa
      781 atatcatcct gcaacgtggc ttcatcaaaa aacgctctga ccgcgttgcg cagttgcttg
      841 cgtcgctggt tgaaggctgc tttcaccagc atcctgaaat ccttttcgct gcgcatggaa
      901 acggggttgg ccacaggggt catgcgaata acgccactca ttactttggg tggtggatta
      961 aaacaaccgg gtggcacatc aaaaaggtac tgcacgtcgt aaaaagcctg cgtgagcaca
     1021 ctggtgacgc cataaatctt gctgcccggt ttggaggcga gccgctgcgc cacttctttc
     1081 tgaaacatgc cgatcacaca ctccacctgt gctttccaat ccagcacttt aaaaacgatc
     1141 tcggtagaaa tgttgtaagg aaaattgccg atcaaagtga attgcccttc aaaaggcaca
     1201 tcggtatcca gcacactttc gtgaatgatt tttgccgcta attccgggta ggttttcgcc
     1261 aggtaggcca ctttttcatc atctatttcc accactttga aattgacacc gggaatttga
     1321 agcaggtatt tggtaatggc gccgccaccc gggccaattt ccaccaactg gctgaagggc
     1381 ctttcctgca aggcggccac aattttgcgg cacatatttt cgtcgtgcag aaaatgctgg
     1441 ccaaggcttt ttttgagtgt gtattgcatg tgatgctgat gacgcgaaag taaccattct
     1501 gaaaggacca ttggcgctca gttgctattg cccgcccccc accctgcaat gaaaaacggc
     1561 cggccacatc gccaaacaag gtttgcctta catttgacac atgaccgaaa ttcaaaaacc
     1621 cattgtagga ttcagttgtg gcgatatcaa cggtattggc cctgaaatca tcatcaaagc
     1681 gctggccgac agccgcatgc tggaattttg tacgccggta atttttgcca gcaataaaac
     1741 catcaacttc taccgcaagg cggtgagcga tagcaatttt cagtaccaga gcttaaagga
     1801 attcagcaag ctgaacccca agatggtgaa catcttcaac tgctgggaag aagaagtggc
     1861 catcaatccc gggcagctga acgaaatcgg tggggcttat gccaaaaaaa gcctgatcgc
     1921 cgcaactgag gcgctgaaag ctggccatat tcatgcgctg gtaacggctc ctattcataa
     1981 aagcaatgtg cagggcgatg atttcagtta ttcgggccat acaccctacc tcaaagatgc
     2041 atttggtgtg cccgaggtgg tgatgctgat ggtggccgac aacatgcggg tagccctgct
     2101 ttcggagcac gtgccgctta aagatgctgc ccaaaatgta acccgcgaaa acatcctgaa
     2161 gaagctgaac gtaatggtga cttcattgca gaaggatttt ggcatcgaca aaccaaaaat
     2221 tgccgtgctg gcgctgaacc cgcatgccgg cgatgaagga ctgattggca aagaagaaga
     2281 agagatcata aaaccggctg tgaaagaagc ccgccagcga ggcatgctgg cattcgggcc
     2341 ttaccccgcc gacgcttttt ttgcccgtgg gcaacatgaa aaatttgatg ccgtgcttgc
     2401 catgtaccac gaccagggtc tcattccttt caaatcactg tcgctgggcg aa
//
LOCUS       DATIQF010000089         3482 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_184071,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000089 DATIQF010000000
VERSION     DATIQF010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3482
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184071"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..209)
                     /locus_tag="VLL95_01405"
     CDS             complement(<1..209)
                     /locus_tag="VLL95_01405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1028 domain-containing protein"
                     /protein_id="HSR37541.1"
                     /translation="MKNLMPIRMQKMALTLSGWALLQPCTAQFFKKEEPFAHTFSIVA
                     RDSATGNMAVGVQSHYFSVGTAVSWG"
     gene            422..2671
                     /locus_tag="VLL95_01410"
     CDS             422..2671
                     /locus_tag="VLL95_01410"
                     /inference="COORDINATES: protein motif:HMM:NF020928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003729 - mRNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Tex family protein"
                     /protein_id="HSR37542.1"
                     /translation="MLEYTGPVSAKLNLRVAQVEAVLRLLQEGATIPFIARYRKDQTG
                     NLDEVQIAAIQDEAKFQKEFSERKAFIIKTIEEQGKMNDQLMAALDKATTLNELEDIY
                     LPYKPKRKTKAQAARENGLEPLAQLLLAQSNAALELEAAKFINEKVASAEDALQGARD
                     IIAEQVNEDATVRTKMRRLFETEGLLISKVLSGKETEAAKYKDYFDYSEPVSKVPAHR
                     ALAVLRGFMEGFLRISIEPAEEAALELLEEQFIQGMSNEGAHVKKALRDAWKRLLQPS
                     LESEFRMAVKTRSDEEAINVFAENLRQLLLSSPLGGKHLLAIDPGYRTGCKTVVLDNK
                     GDLKTNTVIYLHEPNRLYEAEKTIRHLVAQYGIEVIAIGDGTAGRETEKFIKGLQLGL
                     PVFLVNEDGASVYSASEVAREEFPNEDVTVRGAVSIGRRLMDPLAELVKIDPKSIGVG
                     QYQHDVNQVRLKEKLDQTVESCVNLVGVNINTASRHLLSYVSGIGETIARNIVDFRRE
                     NGMFSSRVQLKKVPRLGEKAFEQCAGFLRIANADNPLDNSAVHPESYEIVNHISKDLG
                     VTVKELVGNDQLVKKVNAKQYAGYGELRVQDILKELAKPGLDPRAEAESFEFANIYSL
                     EEVQAGMELPGIVTNLTKFGAFVDIGVKQDGLVHVSEIANRYISDPAEVLKLGQKVKV
                     KVLEIDLQRKRIALSIKQTEPAQAPQQRREIRPGAKPQQANSKPQSKDLSNLDMQDAL
                     AALKNKFGK"
     gene            complement(2706..>3482)
                     /locus_tag="VLL95_01415"
     CDS             complement(2706..>3482)
                     /locus_tag="VLL95_01415"
                     /inference="COORDINATES: protein motif:HMM:NF039873.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37543.1"
                     /translation="RYALKYLQLDNRFQLSAKRRSAGGLGIQWEYLFADPKIENGLTL
                     KGGNSYFTPYLFWQFNNLDKPFFASRGTVIELTAGYVLGINPSFSVYRDGNFIGDISK
                     DLITYGNYGRLTGNISNTIRVNNRISWVNKLQGGANLSEKNSLLNNFFGGGISPTFRN
                     QVQMIGLQEGEADSESMISLQTGPRYNVFGGLYLSVTGGLMTYDFVKKADQNLSQQWV
                     TGGGMTISYDSPIGPVEFTLMSSNKTEGLRTYFNLGFPFK"
BASE COUNT          979 a          765 c          939 g          799 t
ORIGIN      
        1 ccccagctga cagcggtgcc aacgctgaaa taatggcttt gcacaccaac agccatgttg
       61 ccggtggcac tgtcgcgggc cacaattgaa aatgtgtggg cgaatggttc ttccttctta
      121 aagaattgcg ccgtacaagg ctgcagcaat gcccaacctg acagcgtcaa tgccattttc
      181 tgcatccgaa ttggcatgag gtttttcatg atctgatttt ttagaggcat tcttctttca
      241 atcgcctccg aatgtagtgt gcaaagcgaa tttggttgcc attatgttga tgcagaatca
      301 tttttttggg agcgggccaa ggcatttcgg tttcatcctg ctgcaaggct gtgcataact
      361 attttccttg ggcatttcag tactcaccga tacattcgca accctcaaaa tcgaaaggat
      421 catgttggaa tatacaggcc cggtaagtgc caaattgaat ctcagggttg cccaggtaga
      481 agcggtattg cgtttgttgc aggaaggggc caccattcca ttcattgccc gttacagaaa
      541 agaccaaacc ggcaacctgg atgaagtgca aattgcggcc attcaggatg aagccaaatt
      601 ccaaaaggag ttcagcgaac gaaaagcgtt tatcatcaag accattgaag agcaaggcaa
      661 gatgaatgat cagttgatgg cagctttgga caaagcgacc acgctgaatg aattggaaga
      721 catctacctg ccttacaagc ccaaacgcaa aaccaaggca caggctgccc gtgaaaatgg
      781 attggagcca ctggctcaat tgctcctggc acaaagcaat gccgccctgg agttggaagc
      841 agccaaattc atcaatgaaa aagttgccag tgcagaagat gcattgcaag gagcccggga
      901 tatcattgcg gagcaggtga atgaagacgc aacagtgcga accaaaatgc gccggctttt
      961 tgaaaccgaa ggattgctca tcagcaaagt gctgagtggc aaagaaacag aagccgctaa
     1021 gtacaaagac tatttcgatt acagcgagcc ggtttcaaaa gtgccggcac accgggcact
     1081 ggcggtattg cgtggtttca tggaaggctt cttacgcatc agcatagagc cggcggaaga
     1141 agctgcattg gaattgctgg aagaacaatt catccaaggc atgagcaatg aaggagcaca
     1201 tgtaaaaaag gcgttgcgtg atgcctggaa aagattgttg cagccttcgt tggaaagcga
     1261 gtttcgcatg gcggtaaaaa cacgaagcga tgaagaggcc atcaatgtgt ttgctgaaaa
     1321 cctgcgccag ttgttgctga gcagtccttt gggtggcaaa catttgctgg cgatcgatcc
     1381 gggttatcgc acaggttgca aaactgtggt gctcgacaac aaaggggatt tgaaaaccaa
     1441 tactgtcata tacttacacg agcccaatcg attgtatgag gctgaaaaga ccattcggca
     1501 cctggtagcc caatatggaa ttgaagtcat tgccattggt gatggaacag cagggcggga
     1561 aacggagaaa ttcatcaaag ggcttcagtt gggtttgcca gtgtttttgg taaacgaaga
     1621 tggcgccagc gtatacagtg ccagcgaagt ggcccgggaa gagtttccca atgaagacgt
     1681 tacagtacgt ggcgccgtaa gcattggccg ccggctgatg gatccattgg cggaactggt
     1741 gaagatcgat cccaagagca ttggggtggg acagtaccag cacgatgtaa accaggtgcg
     1801 actcaaggaa aaactggatc aaacagtgga gagctgcgtg aacctggtgg gtgtaaacat
     1861 caacactgct tcgcgacacc tgctcagcta tgtgagtgga ataggggaaa ccattgccag
     1921 gaatattgtt gatttcagaa gagagaatgg catgttcagc agccgggtgc aattaaaaaa
     1981 agtgccgagg ctgggagaga aggcttttga gcaatgcgca ggatttttac gcatagccaa
     2041 tgccgacaat ccgcttgata acagtgccgt gcatcctgag agctatgaga tcgtcaatca
     2101 catttcgaaa gaccttggtg tgacagtgaa agaactggtg ggaaatgatc agttggtgaa
     2161 aaaggtaaat gcgaagcaat atgctggata cggtgaactc cgggtgcagg atattttgaa
     2221 agaactggcc aagccggggt tggatcccag ggccgaagcc gaaagttttg aattcgccaa
     2281 tatttacagc ctcgaagaag tgcaggctgg catggaacta ccgggcattg tcaccaatct
     2341 taccaagttt ggggcgtttg tcgacattgg tgtgaaacag gatggattgg tgcatgtgag
     2401 cgaaattgcc aaccgctata tcagcgatcc ggccgaagtg ttgaaactgg gacaaaaggt
     2461 gaaagtgaaa gtgttggaaa ttgacctgca acgaaagcga atcgcattga gcattaagca
     2521 aaccgagcct gcgcaggcac cacaacaacg cagggaaatc aggcctggtg ccaaaccgca
     2581 acaggccaac agcaaacccc agtccaaaga cctgagcaac ctggatatgc aggatgcctt
     2641 agccgcactg aaaaacaaat ttggtaagtg agcaggtaac tatttggtat tgatgcagcc
     2701 aggtcttact taaagggaaa gccgaggttg aaataggttc tcaaaccttc tgttttgttg
     2761 gaggacatca gggtgaattc gacggggcca atgggggagt cgtaggagat agtcataccg
     2821 ccaccggtaa cccattgctg cgaaaggttc tgatctgcct tttttacgaa atcataggtc
     2881 atcagtccgc cggtgactga taaatacagg ccaccgaaaa cattataccg aggcccggtc
     2941 tgcaggctga tcatgctttc agaatcggct tcgccctcct gcaatccaat catctgtacc
     3001 tggttcctga atgtggggct gataccgcca ccaaaaaagt tgttgagcag ggaattcttc
     3061 tccgaaaggt tggcgccacc ctgcagtttg tttacccaac ttatgcggtt gttgacgcgt
     3121 atggtattac tgatatttcc ggtcagccgg ccgtagttgc cataggtgat caggtccttt
     3181 gaaatgtcac ctataaaatt cccgtcgcgg tacacagaga aagatggatt gatgcccagc
     3241 acatagccgg ccgtcaattc aatgacggta ccccgtgaag cgaagaaggg tttgtcaagg
     3301 ttgttgaatt gccagaagag gtagggggtg aaataactgt tgccaccctt taaggtgagc
     3361 ccgttctcaa tttttggatc tgcgaacaag tattcccatt gtatacctag tccacctgcc
     3421 gatcgtcttt tggcactcaa ttgaaacctg ttatccaatt gcaggtactt caatgcatag
     3481 cg
//
LOCUS       DATIQF010000090         2190 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_16793, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000090 DATIQF010000000
VERSION     DATIQF010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16793"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..323)
                     /locus_tag="VLL95_01420"
     CDS             complement(75..323)
                     /locus_tag="VLL95_01420"
                     /inference="COORDINATES: protein motif:HMM:NF014908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37544.1"
                     /translation="MSPFPGAFTHLGGKMLKIYRSKKETATHALQPGSFETDGKSYLR
                     FATADGFVYALEVQMEGKKRMQVEDFLRGFRIENVGGA"
     gene            complement(324..1034)
                     /gene="fmt"
                     /locus_tag="VLL95_01425"
     CDS             complement(324..1034)
                     /gene="fmt"
                     /locus_tag="VLL95_01425"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HSR37545.1"
                     /translation="MKEFPRIVFMGTPDFAVASLDALVKAGYHIVGVVTAPDKPAGRG
                     MKMNESAVKKYAVQHQLPVLQPEKLKNPEFLDNLKMLKADLQVVVAFRMLPEVVWNMP
                     PMGTINVHGSLLPQYRGAAPINWAVINGEKETGVTTFKLQHEIDTGNILLQDRLPIGE
                     DETAGEVHDRMMLLGAQLLVKTIEGLEKGLLKETPQTELLQANGSAAIIKHAPKIFTE
                     TCQVDFSKTTAEVHNQIR"
     gene            complement(1100..>2190)
                     /locus_tag="VLL95_01430"
     CDS             complement(1100..>2190)
                     /locus_tag="VLL95_01430"
                     /inference="COORDINATES: protein motif:HMM:NF018743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1343 domain-containing protein"
                     /protein_id="HSR37546.1"
                     /translation="HLVDSLLKRGVNVVKIFSPEHGFRGTADAGEKVGNTTDSATGIA
                     IISLYGAKRAPSAEDMQDLDVLIFDVQDVGLRYYTYISSLEAFMNACLENAKPLLLLD
                     RPNPNGFYVDGPILEKPFKSFVGMQPIAMVHGLTMGEYARMLVGEKWLSEKANQNMAA
                     FEKTKPTADTPFHFMIIKTSGYTHKDYYALPVRPSPNLPDMQSILLYSSTCFFEGTEV
                     SLGRGTPTPFQFYGHPSFPDTLFSFTPVSMFGSKNPPLQDKRCYGYDLRKEPIDINKP
                     KWRQIQLSYIMNAYKLFPNKDSFFLRPKKNNPQWQDYFFNKLSGNYMLMWQLMNGKSE
                     AEIRKSWQPGLAKYKAMRKKYLLYPDFE"
BASE COUNT          487 a          550 c          563 g          590 t
ORIGIN      
        1 tgagtgaatg agtcaataag tgaatgagtc aataagtgaa tgaagagggc tcgtttgtta
       61 agggccattg aacgctatgc tccaccgaca ttttcgattc ggaagcctcg caaaaaatct
      121 tccacctgca tccttttctt gccttccatt tgtacttcca gggcatacac aaatccgtca
      181 gccgtagcga agcgcaggta gctcttgcca tctgtttcaa aactgccggg ttgcagtgca
      241 tgcgtggcgg tctctttttt actgcggtat atcttcagca ttttaccacc caggtgggta
      301 aaggcgccgg gaaacggcga cagtcaccgg atttgattgt gcacctccgc cgtggttttt
      361 gaaaaatcaa cctggcaggt ttcggtgaat attttcggcg catgtttgat gatggcggca
      421 ctgccatttg cctgcaataa ttcggtttgc ggggtctctt tcaacaaacc tttttccaac
      481 ccttcaatgg tttttaccag cagttgtgct cccagcagca tcatgcggtc gtgcacttca
      541 ccggcggttt catcctcacc aatgggcagg cggtcttgca gcagtatgtt gcctgtgtca
      601 atttcatgct gcagtttgaa cgtagtgaca ccggtttcct tttccccatt gatgacagcc
      661 cagttaatgg gagcagcgcc gcgatactgc ggcagcaggc tgccatgcac attgatggtg
      721 cccatgggcg gcatgttcca aaccacttcg ggcaacatgc gaaaagccac caccacctgc
      781 agatcggcct tcagcatttt caggttgtca agaaattccg ggttcttcag tttttcaggt
      841 tgcagtaccg gcagttgatg ctgcaccgcg tatttcttta ccgcactttc attcattttc
      901 atgccacggc ctgcaggctt atcgggtgct gttaccacgc ccacaatatg atagcctgct
      961 ttcaccaggg catccaacga cgccactgca aaatcaggcg tacccataaa cacaatgcgg
     1021 ggaaattctt tcatgtcgca aatatcaggc aagcacaggc ttctgccatg gaggctttgc
     1081 cgatgtagat gatcgcttgt tattcaaaat cgggatagag caaatatttc ttgcgcatcg
     1141 ccttgtattt ggccaaaccg ggctgccagc ttttgcgtat ttccgcttcg ctctttccat
     1201 tcatgagctg ccacatgagc atatagttgc cgctcagctt gttgaagaaa taatcctgcc
     1261 attgcgggtt gttctttttg ggccgcagga aaaaactgtc tttgttggga aacagcttat
     1321 aggcgttcat gatataactc aactggatct gccgccattt gggtttgttg atatcaatcg
     1381 gctccttgcg caggtcgtag ccgtagcaac gtttatcctg cagtggcggg ttcttgctgc
     1441 caaacatgct taccggggta aaactgaaca acgtatcagg aaatgaaggg tgcccgtaaa
     1501 actggaatgg agtaggggtg ccacgtccca ggctgacctc ggtgccttca aaaaagcagg
     1561 tgctggagta gagcaaaatg ctttgcatat cgggcaggtt ggggctgggg cgcaccggca
     1621 aggcatagta gtctttgtgc gtatacccgc tggttttgat tatcatgaaa tggaagggcg
     1681 tatcagcggt aggttttgtt ttttcgaacg ccgccatgtt ttgattggct ttttcactca
     1741 gccatttttc gccaaccagc atgcgggcat attcgcccat ggtgaggcca tgcaccatgg
     1801 caatcggttg catgcctacg aaacttttga aaggcttctc gaggatgggg ccatctacat
     1861 aaaaaccgtt cgggttgggc cgatcgagca acagcaatgg cttggcattt tcgaggcagg
     1921 cattcatgaa tgcttcgagg ctgctgatat aagtgtagta gcgcaggcct acatcctgca
     1981 catcaaagat caacacatcc aggtcctgca tgtcttccgc actgggtgcc cgcttggcgc
     2041 catacaggga gatgatcgcg atgccggtgg cagagtcggt ggtattgccc actttttcgc
     2101 cggcatcggc ggtaccacga aagccatgct ctggcgagaa tattttcacc acattcacgc
     2161 cacgcttcag taagctgtct acgaggtgcg
//
LOCUS       DATIQF010000091         1510 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_31976, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000091 DATIQF010000000
VERSION     DATIQF010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31976"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..203)
                     /locus_tag="VLL95_01435"
     CDS             complement(<1..203)
                     /locus_tag="VLL95_01435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37547.1"
                     /translation="MQTPGRKYEVRREMALDGTRARRILCGFPSCFLRKKVTMQKTTA
                     KSLTKAEEQVMHALWQIGEGFLK"
     gene            complement(353..>1510)
                     /locus_tag="VLL95_01440"
     CDS             complement(353..>1510)
                     /locus_tag="VLL95_01440"
                     /inference="COORDINATES: protein motif:HMM:NF020260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37548.1"
                     /translation="DSYPSYVLFIHLDPQHVDINVHPTKQEIKFEDEKIVYAFVQAAI
                     KHALAQFSIAPSLDFSLNADIQQLDAVNKPVTDEIENKTISSSLYQTFTQKNQAHKIE
                     PGGGLRSWQEMKQQTDEIKKAVDRSQLTGQTGSTDYFSGTGDSPTTDNQQPATTHGWQ
                     SELAKLREQLFEVSPKTQYADLEYEMRPVSREKRFQWIPETPLMQVHFAYIIAITNHG
                     YLLINQQGAHERILYEQLQKAIFGKPIATQQSLFPVSIELQPADAVLLTELLPDMQQL
                     GYQVEPFGQHSFVIHGTPADVDSGNEQKAVEQILEHYKNFNAEVKFSRREKLIRTLAW
                     QQSIKAGRPLSDKEMRSLVEQLFLCSMPNTTPGGKPTYVEYPLDQLQRTFG"
BASE COUNT          307 a          358 c          389 g          456 t
ORIGIN      
        1 tctttcagaa agccttcgcc aatttgccac agggcatgca ttacctgttc ttcggctttg
       61 gtgagtgatt tagcggtagt cttttgcatt gttacttttt ttcttaggaa gcaagaagga
      121 aaaccacaaa ggatgcgacg agctcttgtt ccatccaagg ccatttccct tcgtacttcg
      181 tacttgcgtc caggtgtttg caaccacccg gaaggaattc cgaatcgaat ataactaact
      241 ttttagtgaa acaactaatt ttttagttgt taaagaattg ttgaaccaca gaggcacaat
      301 ggcacagcgt tgtgtttctg cgtgccgtaa agtgtctctg tggttcaaca aactacccga
      361 aagtcctttg caattgatcc agcgggtact ccacataggt tggctttccg ccgggggtgg
      421 tattgggcat gctgcataaa aacaactgct ccacgaggct gcgcatttcc ttgtcgctga
      481 gtgggcggcc tgctttgatg ctttgctgcc aggccagtgt acggatcagt ttttcgcggc
      541 gactgaattt tacttccgca ttgaagtttt tgtagtgctc cagtatttgt tctaccgctt
      601 tttgttcatt accgctgtct acgtcggcag gtgttccgtg tatcacaaaa ctgtgttggc
      661 caaaaggctc cacctggtag cccagttgct gcatatcggg caacagctcg gtaagtaaca
      721 ccgcatctgc cggttgcagt tcaatgctta ccgggaagag gctttgctgc gtggcaatgg
      781 gtttgccaaa aatggctttc tgcaattgtt cgtacaaaat gcgttcatga gcgccctgct
      841 ggttgatgag caggtaaccg tggttggtaa tggctatgat gtaggcaaag tgcacctgca
      901 tgagcggcgt ctccggtatc cactggaaac gcttttcacg gcttaccggc cgcatctcgt
      961 attcaaggtc ggcgtattgt gttttgggcg atacttcaaa caactgctcc cgcagtttgg
     1021 ccagttcgct ttgccaacca tgagtggttg ctggttgttg gttgtcggtt gttggcgaat
     1081 cgccggtacc ggaaaaataa tcggtgctac ctgtttgacc tgtcaactgt gatctgtcaa
     1141 ccgccttttt gatctcatcc gtttgctgtt tcatttcctg ccagctgcgc aatccgccac
     1201 ccggctctat tttatgggcc tggttttttt gcgtaaaggt ttggtacagg ctgctgctga
     1261 tggtcttgtt ctcaatttca tccgtcacgg gtttgttcac cgcatccagt tgttgtatgt
     1321 cggcgttcag gctgaagtcg agcgaaggcg caatgctgaa ctgcgccagg gcatgtttga
     1381 tggccgcctg cacaaacgca tacacgatct tttcgtcttc aaacttgatc tcctgcttgg
     1441 tggggtgcac gttgatgtcc acatgttgcg gatccaggtg tatgaaaagc acgtacgaag
     1501 gatagctgtc
//
LOCUS       DATIQF010000092         1584 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_138527,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000092 DATIQF010000000
VERSION     DATIQF010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138527"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1194
                     /locus_tag="VLL95_01445"
     CDS             <1..1194
                     /locus_tag="VLL95_01445"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HSR37549.1"
                     /translation="YHQSLMKDIPGTLKVRVLLAQALFGNPDILLLDEPTNGLDIETI
                     SWLENFLADYENIVLVVSHDRHFLDAVCTHVADVDRAKIKVFTGNYTFWYESSQLMAR
                     QISDKNKKVEEKRQALLDFIARFSANASKSKQATSRKKALEKLTIEEIEPSNRRYPGI
                     IFQPLREVGNQILNVEGLSKAVDGRLLFDKVNFSIHKNEKIAFYSRDPLAVTQFFEII
                     NGNSQPDSGKFEWGTTITKAYLPLENNEFFKEGLPMMDWLRQFVPDHVTDADEPFLRG
                     FLGKMLFSGDDIMKKVNVLSGGEKVRCMLSRMMLQNPNCVVLDQPTNHLDLESIQAFN
                     EQCVDFKGIVLLTSHDHTFMETTANRIIELTPSGIIDRLMTFDEYLTDERVHQLREEM
                     YGVTA"
     gene            1402..>1584
                     /locus_tag="VLL95_01450"
     CDS             1402..>1584
                     /locus_tag="VLL95_01450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37550.1"
                     /translation="MAVQPAPVKIDSLSIVPGSFVIAGYDSSWYSLDAARSVLFWKRT
                     PATDSVSIQYRVFNFSL"
BASE COUNT          414 a          409 c          400 g          361 t
ORIGIN      
        1 taccaccaaa gcctgatgaa agacattccc ggcaccctga aagtgcgggt gctgcttgca
       61 caggccttat ttggcaatcc tgacatcctg ttactcgacg aaccgaccaa cggcctcgac
      121 attgaaacca tcagctggct ggaaaatttc ctggcggatt acgagaacat cgtgttggtg
      181 gtgagccacg accgtcactt cctggatgcg gtttgtaccc acgtggccga tgtggaccgt
      241 gccaagatca aagtatttac cggcaactat accttctggt acgagagctc tcaactgatg
      301 gcccgccaga tttccgacaa gaacaagaaa gtggaggaga agcgccaggc attgctggac
      361 tttattgccc gctttagtgc caacgcctcc aagagcaagc aggccaccag ccgtaaaaag
      421 gcattggaaa aactcaccat tgaagaaatt gaaccttcca accgtcgcta ccccggcatt
      481 atttttcagc cgctgcgtga ggtgggcaac cagatactga acgtagaagg tctgtcgaaa
      541 gcggtggatg ggcgtttgct gttcgacaag gtaaatttca gtattcataa aaacgagaag
      601 atcgcttttt acagtcgcga cccattggcg gtaacgcaat tcttcgagat catcaatggc
      661 aacagccagc cggacagcgg gaaatttgag tggggaacca ccatcaccaa ggcctacctg
      721 ccgctggaaa acaatgagtt cttcaaagag gggctgccca tgatggactg gctgcgccag
      781 ttcgtgcccg atcacgtgac ggatgccgat gagcccttcc tgcgtggatt tttgggtaaa
      841 atgctgttca gcggcgatga catcatgaaa aaggtgaacg tgctgagcgg tggcgaaaaa
      901 gtacgttgca tgctcagccg catgatgctt caaaacccca actgcgttgt tctcgaccag
      961 cctaccaacc acctcgatct tgaaagcata caggcattca acgaacagtg tgttgatttt
     1021 aaaggaatcg tgttgcttac cagccacgac cacactttta tggaaaccac ggccaaccgc
     1081 attatcgaac tgacccccag cggtattatc gacaggctga tgaccttcga cgaatacctg
     1141 accgatgaaa gggtgcacca gctgcgggaa gaaatgtacg gtgtgaccgc ctgattcatg
     1201 taagatgaaa acattaaaag ctggcagcct acccgggctg ccatttttct acataccaaa
     1261 ccgggcgctg cctcgttcag tatattgcaa acactaactg catttggctg attgagattt
     1321 tgtattacga tagcgctgtt gagttgctgc cttttctggg cagaaacggg caatggacaa
     1381 tcgaatattc gaaaaggcaa aatggccgta cagcctgcgc cggttaaaat cgacagcctg
     1441 agtatagtgc ccggttcctt tgtcattgca gggtacgatt cctcctggta cagcctcgat
     1501 gcggcccggt ccgttctgtt ttggaaaagg acacctgcca ccgacagcgt ttccattcaa
     1561 tacagggtat tcaacttcag cctg
//
LOCUS       DATIQF010000093         2419 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_16795, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000093 DATIQF010000000
VERSION     DATIQF010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2419)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2419)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2419
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16795"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..878
                     /locus_tag="VLL95_01455"
     CDS             <1..878
                     /locus_tag="VLL95_01455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37551.1"
                     /translation="LTWDDEVQLLQRELTRAWTALKLEEHNNRNLPPLTDASSPEAYQ
                     ALAEKASKSLLQFLSQQDIVTVKPYFETALRQHLGSYLPPEKRNFFTIGEHYDPRPLY
                     SHFYHWFELARMDLEPHANEIRRSPLLYNIWDNRNEGLATAVEEIFMQAGLYNESPRS
                     REIVYIMLAQRAARGLGSLYAHANLMTMEEAGGIHSEYTPRGWMKTEKELQQFEQHLY
                     MRQPGYGTSYITGKYLIERAMADRAHQLEQQKQPFRLKDFMDQVNAIGCIPVSLMHQE
                     ITGHNADLKKIGPAK"
     gene            930..1745
                     /locus_tag="VLL95_01460"
     CDS             930..1745
                     /locus_tag="VLL95_01460"
                     /inference="COORDINATES: protein motif:HMM:NF016296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family transcriptional regulator
                     DNA-binding domain-containing protein"
                     /protein_id="HSR37552.1"
                     /translation="MTPRSDKYYPDIPFFLVAIPFIAAINYFLTYTNIRFNSFLALTF
                     TIDTVQGYLAWWLVRSLIIWLDRKMPYHNGTVRRIAVQLPLTLFSGLFVIAASTELVS
                     WIAKGKPAPLHFYTIDLIIIAIWFFVINGVYIMLHYYHEWKTLAQSRKEAQQMLQGGL
                     LVKQGKADYKLPFDELAGCYVEGDYVLATNRTGKKFFLDQSLDKLEPTLPQTLFFRLN
                     RQYIVHQQMVMGFKRGENGKLEILLHPHDILPASITVSRTKAPAFKAWFRPQD"
     gene            1845..>2419
                     /locus_tag="VLL95_01465"
     CDS             1845..>2419
                     /locus_tag="VLL95_01465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37553.1"
                     /translation="MKSRLLLALTALLLNLTASAQENPANRYRNFPVIITLQFHSLSM
                     PFRDLGGTFRNIGLGIGTEVSFNGRHDWVQQFSTLWYRNKATGNGWVLYTQTAYRPDI
                     GNAGWYGEVKAGIGYYLVKRPNPGWQQVDGQWQPAAKKDKGMLTIPVGIGAGYHHWSA
                     QTYAAPFATYQFMPAIGYNKSVPVVPQTFLQL"
BASE COUNT          597 a          735 c          568 g          519 t
ORIGIN      
        1 cacttacctg ggatgatgaa gtgcagctgc tgcaacgtga actcacccgg gcatggacgg
       61 ccctgaaact ggaagaacac aacaaccgca acctgccccc gctcaccgac gcttcctcac
      121 ccgaagccta ccaggcattg gccgaaaaag catcgaagag tttgttgcaa ttcttgtcgc
      181 aacaagacat cgtaaccgtg aaaccctatt tcgaaacggc tttgcgccaa cacctcggca
      241 gctatctgcc cccggagaaa cgcaacttct tcaccatcgg cgagcattac gatccacgcc
      301 ccctgtattc gcatttctat cattggttcg agctggcccg catggacctg gagccgcatg
      361 ccaatgagat caggcgcagt cccttgctgt acaacatttg ggacaaccgc aacgaagggc
      421 tggccaccgc ggtggaagaa atattcatgc aggcaggctt gtacaacgaa tcgccacgca
      481 gccgcgaaat tgtgtacatc atgctggcac agcgggcagc ccgcggcctc ggctccctct
      541 atgcgcatgc caacctgatg accatggaag aagccggcgg catccacagc gaatacacgc
      601 cccgcggctg gatgaaaaca gaaaaagaac tgcagcagtt tgaacagcat ttgtacatgc
      661 ggcagcccgg ctatggcacc agttatatca ccggcaaata cctcatcgaa agagccatgg
      721 ccgatcgagc ccaccaattg gaacagcaga aacaaccttt ccgcctcaaa gattttatgg
      781 accaggtgaa tgccattggc tgcatccccg tttcactcat gcaccaggag atcaccggcc
      841 acaatgccga cctgaaaaaa atcggaccgg caaaataaga acgtccctat tgccccattg
      901 actcattcac ctattgcccc attcacttat tgactccccg ctccgacaaa tattaccccg
      961 acattccttt cttcctggtg gccattcctt ttatcgccgc catcaattat ttccttacct
     1021 ataccaacat ccgtttcaat agtttcctcg ccctcacttt taccattgat accgtgcagg
     1081 gctacctcgc ctggtggctg gtgcggtcac tcatcatttg gctggacagg aaaatgcctt
     1141 accacaacgg aacagttcgc cggattgcgg tccagttgcc gctcaccctg ttcagtggcc
     1201 tcttcgtgat agccgccagt accgaactgg tgagttggat tgccaaaggc aaaccggccc
     1261 cgctccattt ctataccatt gatcttatca ttatcgccat ttggtttttc gtgatcaatg
     1321 gcgtttacat catgctgcac tattaccacg aatggaaaac actggcgcaa agccggaagg
     1381 aagcgcagca aatgctgcag ggcggcctgc tggtgaagca gggaaaggcc gattacaaat
     1441 tgccattcga tgaactggcc ggctgctacg tggagggcga ttatgtgttg gccaccaaca
     1501 ggaccggcaa aaaattcttt ctcgaccagt cgctcgacaa actggaaccc accctgccgc
     1561 aaaccttgtt cttccggctc aaccgtcaat acatcgttca ccagcaaatg gtgatgggat
     1621 tcaaacgggg tgaaaatggg aaactggaga tcctgctgca tccccacgac attttgccgg
     1681 ccagcattac tgttagccgt accaaagcgc ctgcattcaa agcctggttt cggccgcaag
     1741 actgacattt caccggtttt cctgctacac ttgggcgaaa tgctggcgac cgaatgcgca
     1801 aagcagtttt tccgcaacca tttttgtgga gcaaaagcat tcgcatgaaa tcacgcctgc
     1861 tcctagcatt gacagccttg ctgctgaacc ttaccgccag cgcccaggaa aatcctgcca
     1921 accgctaccg caattttccc gtcatcatca ccctgcagtt ccactcgctg tcgatgcctt
     1981 ttcgcgacct gggcggcacc tttcgcaaca taggcctcgg cattggcacc gaagtgagct
     2041 tcaatggccg gcacgattgg gtgcaacaat tctccaccct ctggtaccgc aacaaagcca
     2101 ccggcaatgg ctgggtgctg tacacccaaa ccgcctaccg acccgatata ggcaatgccg
     2161 ggtggtatgg tgaagtaaaa gccggcatcg gctactacct ggtcaaacgg cccaacccgg
     2221 gttggcaaca ggtggatggc caatggcaac ccgctgctaa aaaagacaag ggcatgctca
     2281 ccatcccggt gggcatcggg gccggctatc accactggtc ggcacaaacc tatgcggcac
     2341 cttttgcgac ctatcaattc atgcctgcta ttgggtacaa caaaagcgtg ccagtggtgc
     2401 cgcaaacttt tttacaact
//
LOCUS       DATIQF010000094         2747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_184103,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000094 DATIQF010000000
VERSION     DATIQF010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184103"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2341
                     /locus_tag="VLL95_01470"
     CDS             <1..2341
                     /locus_tag="VLL95_01470"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HSR37554.1"
                     /translation="VSAFAFATYGVIMCGVLGQMRNGYEFGKLGLILLEKFNAKEWKT
                     QIYTPIYALIINWNEHVHNTLRPLQESYHIGMETGAIEFACINTNIYCIHAYLSGRPL
                     ERLEQETKAYSESFNQFKQETNFNYNEVYRQPMLNFMGRSANPLVLTGEAYDEDKMMA
                     QNTERNDKTGTFFIHFNKLILSYYFHEYERAASHAAESRKLLEAVLAKFEIPNHHLYE
                     ALMLLALYPKAGTDKGKYLRRIKGNMRKMKTWARNAPENYQHKYDLLKAELLRINGNF
                     NDARLLYDKAIKGAAANDYLHEAALGYELAGRFYMAQESEDLAEYYLKASYTTYREWG
                     AQAKLRQMEQVYPRYVSGVNRTSGNIMESGTVNETTSMLHGSVLDITTVLKAANTISG
                     EVVLSKLLTVLMSIVIENAGAQKGVLALAEGHELFVEAMKDIQEDSISLLTHTLLSTA
                     QLVAPTVITYVRRTGEYVVINNAQSDPRFGKDSYIVEKAPKSIMCVPINHQGKFIGIL
                     YLENNLTTGAFTQERINLLSLLSGQIATSIENALLYDSLGKKVQERTAELALEKQKAD
                     NLLFNILPVEIAEELKRNGSTNPQKFESVTVLFTDFEGFTLNSSKMTPEEVVNTVDTC
                     FSAFDSIVSKYKIEKIKTIGDAYMCVGGLPIPNSTNTTDAVMAAIEMRDWIHEYNEAQ
                     RLQGKPTFKVRIGLHTGPVVAGVVGKKKFAYDIWGDTVNTASRMESGSEGGRINISGE
                     TYRLVSKTFDCIYRGKIPAKNKGEVDMYFVEAKKEEAAI"
     gene            2338..>2747
                     /locus_tag="VLL95_01475"
     CDS             2338..>2747
                     /locus_tag="VLL95_01475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37555.1"
                     /translation="MTVVNNNDPMVGQGVCEECLRKTRIGYKRDGAFFRKGMKGINHL
                     EVGNSAIISNPITIFIEWCYNQFMRIRDAWNRLMAKMFPRVEVCWGKRMDSAIVGRIT
                     FAQKADETIPIHHMPVAFWSRTWWGQWRKLSEGMT"
BASE COUNT          789 a          610 c          701 g          647 t
ORIGIN      
        1 agtatcagcg tttgcttttg ccacctatgg cgtgatcatg tgtggcgtgt tggggcaaat
       61 gcgcaacggc tatgagtttg gtaagctcgg tttgatcctt ttggagaagt tcaatgcgaa
      121 agaatggaaa acccagatct acaccccgat ctatgcattg atcattaact ggaacgagca
      181 tgtgcacaat acgcttcggc cgttgcagga atcgtatcac atcggtatgg aaacgggtgc
      241 tatcgaattc gcctgtatca ataccaatat ttattgcatt catgcctatc tcagcggcag
      301 gccactcgaa cggctggagc aggagaccaa agcttacagt gaaagcttca accaattcaa
      361 acaggaaacc aacttcaact acaatgaagt gtatcgccaa cccatgctca atttcatggg
      421 gcgttcggcc aacccgctgg tgctcaccgg cgaagcgtac gacgaagaca aaatgatggc
      481 gcaaaacact gagcgcaacg ataagaccgg aaccttcttt attcatttca acaagctcat
      541 tctttcttac tacttccatg agtacgaaag agcggccagt catgcggcag agtcgcgaaa
      601 attactggaa gcagtattgg ccaaatttga gatccccaat caccacctgt atgaagcgct
      661 tatgctgctg gcattgtatc ccaaggcagg tactgataaa ggcaaatacc tgcgccggat
      721 aaaaggcaac atgcgcaaaa tgaaaacctg ggccaggaat gcgcctgaaa actatcagca
      781 caagtatgat ttgttgaaag cagagctgtt gcgcatcaat ggcaatttca atgatgcccg
      841 attgctgtac gataaggcca tcaaaggcgc tgcggcaaat gattacctgc atgaagcggc
      901 attgggttat gaattggccg gccgcttcta tatggcacag gaatcggaag atctcgctga
      961 gtattatctc aaagcttcct acaccactta ccgagaatgg ggcgcccagg ccaaactgag
     1021 gcaaatggaa caggtgtatc cacgctatgt atcgggtgtc aacaggacat caggtaacat
     1081 tatggaatca ggtacggtta atgaaactac ctcgatgttg catggcagtg tattggacat
     1141 taccacagta ctgaaagcgg ccaataccat ttcgggtgaa gtggttcttt caaaactgct
     1201 taccgtactg atgagcatcg tgattgaaaa tgccggagcc cagaaaggcg tattggcttt
     1261 ggcagagggt catgagctgt ttgtagaagc gatgaaagat atacaggagg attcgatctc
     1321 cctgctgacg catactctgc tctcaactgc gcagttggtg gcacccaccg tcattaccta
     1381 tgtgcgtcgt accggtgaat atgtggtaat caataatgcg cagtccgatc cgcggtttgg
     1441 caaggactcc tatatcgttg aaaaggctcc gaaaagcatc atgtgtgtgc ccatcaacca
     1501 ccagggtaag ttcatcggca ttctttacct ggaaaacaac ctgactaccg gcgccttcac
     1561 gcaggaacgc atcaacctgt tgtctttgct ctccggccag atagctacct ctattgaaaa
     1621 cgcgttactg tacgacagcc tcggcaagaa agtgcaagaa cgtactgccg aactggcttt
     1681 ggaaaagcaa aaagccgaca atttgctttt caacattttg ccggtggaga tcgctgaaga
     1741 actgaagcga aacggaagca ccaacccgca aaaattcgaa agcgtgaccg tgttgtttac
     1801 cgactttgaa gggttcacgc ttaactcttc gaagatgacg ccggaggaag tggttaacac
     1861 ggtggatacc tgtttcagtg ccttcgacag cattgtgagc aaatacaaga tcgagaagat
     1921 caagaccatt ggagatgctt acatgtgtgt aggtggattg cccattccca attctaccaa
     1981 tactactgat gctgtgatgg ctgccattga aatgcgtgac tggatacatg agtataatga
     2041 agcgcagcgg ttgcagggaa aaccaacctt caaggttcgt atcggtttgc atactgggcc
     2101 ggtggtggca ggagtagtag gtaagaaaaa gtttgcttac gacatatggg gcgatactgt
     2161 gaataccgcc agccgcatgg aatcgggcag tgaaggggga aggatcaata tttcagggga
     2221 aacctatcga ctcgtatcta aaacgtttga ttgcatttac cggggtaaaa tacctgccaa
     2281 gaacaaggga gaagtcgata tgtattttgt agaagccaaa aaagaagaag ccgcaatatg
     2341 acagtagtta acaacaatga tccaatggtg ggccaaggtg tgtgcgaaga atgtcttcgc
     2401 aaaaccagga ttggctacaa aagagatggc gcatttttca ggaagggaat gaaaggcatc
     2461 aaccatcttg aagtggggaa ctctgccatc atttctaacc caatcaccat tttcattgaa
     2521 tggtgttaca atcaattcat gcgcattcgt gatgcatgga atcgattgat ggcaaaaatg
     2581 tttcccaggg tggaagtttg ctggggcaag cgaatggaca gtgcaattgt gggacgcatc
     2641 acttttgcgc aaaaggccga tgaaaccatt cccatccatc acatgccagt ggcattctgg
     2701 agtcgtacct ggtggggaca gtggcgcaaa ctgagcgaag ggatgac
//
LOCUS       DATIQF010000095         5312 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_138571,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000095 DATIQF010000000
VERSION     DATIQF010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5312)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5312)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5312
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138571"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            191..679
                     /locus_tag="VLL95_01480"
     CDS             191..679
                     /locus_tag="VLL95_01480"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HSR37556.1"
                     /translation="MKELLCQYAAYNVWANHKLLYQILQMEEAKWYQQTPGSFDSLYK
                     TILHMWDAESAWYQRMRLHERILVPSANFDPSLKDACNGLLHQSMEWEPFIRESLNEE
                     AISSKLIYTNSKGEEFRQPVHEVLLHVFNHSNYHRGQLVVMMRALGETNIPGTDFILF
                     AR"
     gene            752..2431
                     /locus_tag="VLL95_01485"
     CDS             752..2431
                     /locus_tag="VLL95_01485"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: protein motif:HMM:NF010030.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004329 - formate-tetrahydrofolate ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HSR37557.1"
                     /translation="MSTFPSDLEIAQSAPIRHIKEIAASIGISNDDLEYYGKYKAKLP
                     LKLIDNEKVQQHHLVLVTAITPTPYGEGKTTMSVGLTDGLNRIGKRAMAVLREPSLGP
                     VFGIKGGAAGGGYAQVIPMEDINLHFTGDFSAIEKANNLLAALIDNNLQNKKGSLNLD
                     PRQIVWKRVMDMNDRALRNILIGLGGTNNGIPREDGFNITPASEIMAILCLSENLADL
                     KQRLGNIFIGKTFDGKAVFARDLNAVGAMAALLKDAIKPNLVQTLEGNPAILHGGPFA
                     SIAQGTNTVVATRMGLTLADYVVTEAGFAADLGAEKFFDIKCQSAGLKPEAVVLVTTI
                     KALRHHGGAKKDELQSADATKVVLGLTNLEKHMENIQKFGIKPVVCINWFPTDSEEEI
                     KVVQTFCQQHGVQAVVCKAFAEGSAGAESLAKAIVDMVESNGNQFKPLYQWDWPIEQK
                     IETIAKEIYGADGVDYSVKAKSNLKTIKELGMDRLPVCMAKTPKSLSDNERKLGRPID
                     FVVTVREFEFASGAGFVIPILGEMMRMPGLPNTPAAEQIDLTDDGRIIGLF"
     gene            2531..2941
                     /locus_tag="VLL95_01490"
     CDS             2531..2941
                     /locus_tag="VLL95_01490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37558.1"
                     /translation="MILVFSVMICLPCCEQAEAEPQGYLHKDLSEQMDALAVLQGSIG
                     EELNKGTPQNADWLVEGLDSVLLLINERLNEHPSLLRPFDKFYEQKLKTPIHSLREAI
                     ATGDTVAARRNYILLVDRCNSCHKEHSVEEKAHY"
     gene            complement(2949..3386)
                     /locus_tag="VLL95_01495"
     CDS             complement(2949..3386)
                     /locus_tag="VLL95_01495"
                     /inference="COORDINATES: protein motif:HMM:NF021438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2147 domain-containing protein"
                     /protein_id="HSR37559.1"
                     /translation="MKNMIACLLACTFFVAAHAQKHAIEKTWYNAEKTSKIRIFKATD
                     GKYYGKIVWLKTPNDDKGNPRTDKENPDEAKQTKPLMDLLILTGFAATKDPNVFEGGK
                     VYDPNNGKTYCGKLTLKENAIDLRGYICSMSFLGRTSQWTLAE"
     gene            complement(3465..4466)
                     /locus_tag="VLL95_01500"
     CDS             complement(3465..4466)
                     /locus_tag="VLL95_01500"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: protein motif:HMM:NF006829.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HSR37560.1"
                     /translation="MSQKITAAITAVGGFVPPDKLTNFDLEKIVDTNDEWIRTRTGIE
                     ERRILKGEGKGTSHLGTPAVQQIIEKKGLDPLEIDCIICATVTPDMMFPATANLIADR
                     VGAKNAWSFDINAACSGFLYALTTGASFIESGRYKKVIVVGADKMTSIIDYTDRTTCI
                     IFGDGGGAVLLEPNTEGYGVLDSILRSDGSGCTHPLSCAGGSAKPATIETVMAREHYV
                     YQEGQAVFKFAVKGMADVSAELMERNNLTADDIAWLVPHQANLRIIDATANRMGLDKD
                     KVMINIQKYGNTTAGTLPLCLHDWEKHLKKGDNIVLAAFGGGFTWGATWLKWAYDGE"
     gene            complement(4590..>5312)
                     /locus_tag="VLL95_01505"
     CDS             complement(4590..>5312)
                     /locus_tag="VLL95_01505"
                     /inference="COORDINATES: protein motif:HMM:NF009044.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HSR37561.1"
                     /translation="EVRKATMFARWDRMAKQFTRIGKEIAIAVKAGGSDPSTNAALRR
                     CFQNARSVGMPKDRVEAAIKRATGKEMVNYDEILYEGYAPHGVAILVETATDNHVRTV
                     ANVKSHFTKGGGSLGNSGSVSFQFKKMGVFKLDPAGLDPEELELELIDAGLEELGEGT
                     TEPDNMGNTREVLVLRCGFTDFGNLQSALDAKGITPLSAEVEWIPTTTVPVNDEQAEE
                     VSKLIERLEQDDDVQKVFHNMG"
BASE COUNT         1269 a         1322 c         1425 g         1296 t
ORIGIN      
        1 gtggaagtgg cataaatggg ggtaatatga gaactgttgg ggtctggctc atgtcctccg
       61 tgaatggcgg tactgctcca accctgccag gtaaaatttt tatttgccat aatggtttct
      121 tggatacttt tagcgatagg cttcgcagcc aaatctatta cttaatcatt gaaagctacc
      181 ggagttttat atgaaagaat tgctctgcca atatgccgct tataatgttt gggccaacca
      241 taaactactg taccagatcc tgcaaatgga ggaggccaaa tggtaccagc aaaccccggg
      301 gagctttgac agtttgtaca aaaccatcct ccacatgtgg gatgcggaaa gtgcctggta
      361 ccaaagaatg cgcctgcacg aaaggatcct ggtgccatct gcgaattttg atccctcgct
      421 gaaagatgcc tgcaacgggc tgcttcacca gagcatggag tgggagccgt tcattcgtga
      481 atcattgaac gaagaagcca tcagcagcaa actcatttac accaattcaa aaggagagga
      541 gttcaggcag cctgtgcacg aagtgttgtt gcatgtgttc aatcacagca actatcatcg
      601 cggccaactg gtggtgatga tgcgtgccct gggcgagacc aatatccccg gtaccgattt
      661 catcctgttt gcccgttgag atggtttgct gacgtgtgtc agcatttcta aagaacaatc
      721 gttgcacctt gcggacaacg attgtttttt tatgagcaca ttcccttccg acctggaaat
      781 tgcgcaatca gcgcccatcc gtcacatcaa agaaatagct gccagtattg gcattagcaa
      841 cgatgacctt gaatactacg gaaagtacaa ggccaaactg ccgctgaaac tgatcgacaa
      901 tgaaaaagtg caacagcacc accttgtgct ggtgaccgcc attacgccta cgccttatgg
      961 tgaaggaaag acgaccatga gtgtgggcct gaccgatggg ttgaacagga taggcaagcg
     1021 ggccatggcg gtattgcgtg agccatcgtt aggcccggtg ttcggcatta aaggcggcgc
     1081 tgctggtggc ggttatgcgc aggtgatccc gatggaagac atcaacctgc atttcaccgg
     1141 cgatttcagt gccattgaaa aggccaacaa cttgttggca gcgcttatag acaataacct
     1201 gcagaacaaa aaaggctccc tcaacctgga tccccggcag atcgtgtgga agcgggtgat
     1261 ggacatgaat gaccgcgccc tgcgcaacat cctgattggc ctgggtggca ccaacaatgg
     1321 cattccccgg gaagacggct tcaatatcac ccctgcctct gagatcatgg ccatcctttg
     1381 cctgagcgaa aacctggcag acctgaagca acgtctcggc aatattttta tcggcaaaac
     1441 atttgatggc aaggcggttt ttgcccggga cctgaatgca gtaggcgcca tggccgcttt
     1501 gctgaaggac gccatcaaac ccaacctggt acaaacactg gaaggcaacc cggccatatt
     1561 gcatggcggg ccgtttgcca gcatagcaca aggcaccaac accgtagtgg ccacccgcat
     1621 gggtttgaca ctggctgatt acgtggtgac cgaagcgggt tttgctgctg acctcggtgc
     1681 cgaaaaattc ttcgacatca aatgccagag tgccggcctg aagccggagg ccgtggtttt
     1741 ggtgaccacc atcaaagctt tgcgacatca tggtggggct aaaaaagatg aactgcaaag
     1801 tgcagatgcc accaaggtgg tgctgggcct gaccaacctg gaaaagcaca tggagaacat
     1861 ccagaagttt ggcatcaaac ccgtggtgtg catcaactgg tttcctaccg atagtgagga
     1921 agagatcaaa gtggtgcaga cattttgcca acagcatggc gttcaggccg tcgtgtgcaa
     1981 agcttttgca gagggcagcg ccggtgcgga aagcctggca aaggccatag tggacatggt
     2041 ggagtcgaac ggcaatcaat tcaagccgct gtaccaatgg gattggccga ttgaacagaa
     2101 gatcgaaacg attgcgaaag agatttatgg ggccgatggg gtagattact cagtgaaagc
     2161 caaatccaat ctcaaaacca ttaaagaact gggcatggac aggctgcccg tgtgcatggc
     2221 gaaaacgccc aaaagcctga gcgacaatga aaggaaactg ggacggccta ttgatttcgt
     2281 ggtgacggtt cgtgagtttg aatttgcctc cggcgccggg ttcgtcatcc cgatactggg
     2341 cgaaatgatg cgcatgccag gcctgcccaa tacgccggct gccgagcaaa ttgaccttac
     2401 agatgatgga aggatcatcg gattgttctg agtgaaagac cagttcgttt gctgtacctc
     2461 ggtaatgcac ttaatttcgc tgcgttaacc aacttgcatg catttcagtt ttcgcagttt
     2521 gcccttaatc atgatcctgg tcttctcagt gatgatctgt ttgccttgct gtgagcaggc
     2581 cgaagcagag ccacagggct atttgcacaa agacctcagc gagcaaatgg atgcgctggc
     2641 cgtattgcaa ggctccattg gtgaagagtt gaataaaggc acgccccaaa atgccgattg
     2701 gctggtggaa ggattggaca gcgtgctgct gctgatcaac gaacggctca atgaacaccc
     2761 cagcctgctg cgaccgtttg ataaatttta cgagcagaag ttgaaaacgc ccatccacag
     2821 cctgcgtgaa gccatagcaa ccggggatac cgttgctgcc cgtcgcaact acatactgct
     2881 ggtagaccgt tgcaacagct gccacaaaga gcattcagtg gaagaaaagg cgcattattg
     2941 accggtgcct attcagccag tgtccactgc gaggtacgac ccaggaaact catgctgcag
     3001 atgtagccac gcaagtctat tgcgttttct ttcagggtga gttttccgca ataggttttg
     3061 ccgttgttgg gatcatacac tttgccccct tcaaatacat tcgggtcttt ggtagcagca
     3121 aacccggtaa ggatgagcaa atccatgagg ggcttggttt gtttggcttc gtccgggttt
     3181 tctttatcgg tgcggggatt gcctttgtcg tcgttgggtg ttttcagcca tacgatcttg
     3241 ccgtagtatt ttccgtcggt ggctttgaat atccggatct tggaagtctt ttcggcattg
     3301 taccaggttt tttcaatggc atgtttctgc gcatgggcag ctacaaaaaa ggtacaggcg
     3361 agcaggcagg caatcatgtt tttcatagtc gtgttcattt gcaactgcaa taaataaaaa
     3421 atgcgaacac catgttcgca ttataacgtt aaggaataag aagtttattc gccatcgtag
     3481 gcccatttga gccaggtggc gccccaggtg aagcccccgc caaaggcagc caacacaata
     3541 ttgtcgcctt tcttcaggtg tttttcccaa tcatggaggc aaagcggcaa agtgcctgcg
     3601 gtagtattgc cgtacttctg gatattgatc atcaccttgt ctttgtcgag acccatgcgg
     3661 ttggccgtgg catcaatgat gcgcaggttg gcctggtgcg gcaccagcca ggcaatgtcg
     3721 tcggcagtca ggttgttgcg ctccatcagt tcggcgctca catcggccat gcccttcacg
     3781 gcaaatttga aaacagcctg gccttcctgg tacacataat gttcccgggc cataaccgtt
     3841 tcaatggtag caggcttggc agagccacct gcacatgaaa gcgggtgggt gcagccactg
     3901 ccatcgctgc gcaatatgct gtcgagcacg ccgtagcctt cggtattagg ctcaagtaga
     3961 acggcaccac caccatcgcc aaaaatgatg caggtggtac gatcggtata atcaataatg
     4021 gaggtcattt tatcggcgcc caccacgatc acttttttgt aacggccgct ttcaataaag
     4081 ctggcgccag tagtgagggc atacaggaac ccgctgcagg cagcattgat gtcgaagctc
     4141 caggcgtttt tagcccctac gcggtcggct atcaggttgg ccgtggcagg gaacatcatg
     4201 tcgggcgtaa cagtggcaca gataatacaa tcgatctcaa gtgggtcgag ccctttcttc
     4261 tctatgatct gttgtacggc cggtgtgccc aggtggctgg tgcctttgcc ttcccctttc
     4321 aggatccttc tttcttcaat gccggtgcgg gtgcggatcc actcatcgtt ggtatccact
     4381 attttttcga ggtcgaaatt ggtcagttta tcggggggca caaaaccgcc aacggcggta
     4441 atggctgcgg taattttttg gctcataacg gcggcgaaga taacaaaacg taataaggtg
     4501 gcattcctgc gccttccggc taatgttgta ataaataaaa aatgcctccc ctggaggagg
     4561 caccattcat ttaaagggtg gctggtatgt caacccatat tgtgaaacac tttctgcacg
     4621 tcgtcgtcct gttccaggcg ttcgatcagt ttgctcactt cttcagcctg ctcgtcgttc
     4681 acaggtacag tcgtagtggg gatccattcc acttcagcgc ttaaaggcgt gatgcctttg
     4741 gcatcaaggg cgctttgcag gttgccgaaa tcggtaaagc cacagcgcag caccagcact
     4801 tccctggtgt tgcccatgtt atcaggttct gtggtgcctt cgcccagttc ctccaggccg
     4861 gcgtctatca gttccagttc cagttcttcg gggtcgaggc cggcagggtc gagtttgaat
     4921 acacccattt ttttgaattg gaaggatacg cttccgctat tgcccaatga accgccaccc
     4981 ttggtgaaat ggcttttcac gttggccacg gtgcgcacat ggttgtcggt agcggtttcc
     5041 accaggatgg ctacaccatg aggagcatat ccttcgtaaa ggatttcatc atagttcacc
     5101 atttcctttc cggtggcacg tttgatggcg gcttctacgc ggtctttggg catacccacg
     5161 ctgcgggcat tctgaaaaca acggcgcaag gcagcgttgg tggaggggtc ggaacccccg
     5221 gcttttacag caatggcaat ttccttaccg atgcgggtaa actgcttggc catgcggtcc
     5281 catcgggcaa acatggtggc tttacgtact tc
//
LOCUS       DATIQF010000096         3957 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_153741,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000096 DATIQF010000000
VERSION     DATIQF010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3957
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153741"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1750)
                     /locus_tag="VLL95_01510"
     CDS             complement(<1..1750)
                     /locus_tag="VLL95_01510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37562.1"
                     /translation="MTLMRWNVFIPALLISAALAVPQNMIGCGPMMEPHDYYASFLSK
                     EMIEDKGARPFFYTSLLDFYDDWSEEEAVSEVNENIVAEWQQYAGGKVSREDAAHLVY
                     KANTAEVKQLITALKTPTTPLSPKLKSNSMAQALLKEKKAEALQYLLLAKTIEPFCTT
                     PDQWSDAPPRDSLKINGYISQANTGFSKTTDPFLKNRYAFLRVKLAFYNNRLKDCVGW
                     YDASFDNTNQTAVQPLAFSYKAGALFRMGKGAEAAYSFSRLFAKASPADKKKIFLGFL
                     WSTDRCNPELIEKYTALAPNQQEKAYETALFGLFGEAWQLPILQRTYALDPSCELLPL
                     LAIREMNKLEEKYLTPHIEKQEGSRPYYFSWYERDSILPRDEHVLACIASFEQMTKDA
                     RVPNRPLFATGVAYLQYMRGDYAAARQALAQASGMQSNAAVKDQQQLIGLLIQTSELK
                     QLDAAAEQALLPSLQWLQQKAIKDSRENDYRLFYRNYFSQVLAPLYFRQGDFHKTALA
                     YGMADKSGVPDTSSAHYSGSSIDYLHNDLNTAAIEKLYAYRNNPSPSAFEQFVIKNNG
                     IRNEDVIDMMGTTHLRD"
     gene            complement(1704..2690)
                     /locus_tag="VLL95_01515"
     CDS             complement(1704..2690)
                     /locus_tag="VLL95_01515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37563.1"
                     /translation="MAVICLLSCKTHDEPVVHRGFYYWKSRFALDSTEASALQTLRTE
                     KLYIKFFDVGWDELSRQPAPIAKIQFSQKPPSGVSVVPVVFITNETLQQCSADQLAQL
                     ALKIPQLLSSQLSNNQLPAPKEIQVDCDWTATTKDKYFLLLQLLKKTDFFKDKILSAT
                     IRLHQVKYRNETGVPPADRGLLMCYNMGNLTKPETKNSIIETSVLEQYIGRAREYPLP
                     LDMALPLFDWWVWFRGNEYMGLVYAETLQPTDSKKWRAPKDTSFNGYNFKAGDWLRYE
                     GSDAAEIDKAIRLLKAQRNCQEQNIILYHLDAKNLAHYDPDALERFYSGFAH"
     gene            complement(2764..>3957)
                     /locus_tag="VLL95_01520"
     CDS             complement(2764..>3957)
                     /locus_tag="VLL95_01520"
                     /EC_number="1.17.7.3"
                     /inference="COORDINATES: protein motif:HMM:NF016438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HSR37564.1"
                     /translation="TEDPEFEIPVCRDLVKRYQPQDNRKETNAGLPTPGTALKYSPFE
                     YKRRSTFEVGNIGGKQVPVVIADLSKLDKITPQSLLSIGYSYDAITDKWSIGDMAADY
                     IFTGKAELDFALPGTLKVITWPNHWEAASDKEKYFPIFDIHGFVEAEMESDRMNFVMI
                     DCFNDDTSINDFTFLDEVANDPTVVLCLSSTRNNAMQAVRRMFMELQARDIKNPVVLI
                     TDSNWQTADEHLIHYATETGALLLDGFGDGICLGMSAASYESATVVNASGRNYLNNAT
                     PEQFINNTAFGILQATRTRISKTEYISCPSCGRTLFDLQETTAKIRSRTNHLKGVKIA
                     IMGCIVNGPGEMADADFGYVGSGPGKITLYKGKEIVKRNVDSEVAVDELINLLKENEA
                     WVEPA"
BASE COUNT          857 a          995 c         1038 g         1067 t
ORIGIN      
        1 aatcacgcag gtgagtggtg cccatcatgt caatcacatc ctcattcctg atgccattgt
       61 tctttatcac aaattgttca aaggcagaag gcgaggggtt gttgcggtag gcatacaatt
      121 tttcaatggc tgcggtattc aggtcgttgt ggaggtagtc aatgctgctg ccggagtaat
      181 gcgcactgct ggtatccggc acaccggatt tgtcggccat tccataggcc agtgcggttt
      241 tatgaaaatc tccctgcctg aaataaaggg gtgccagtac ttgtgaaaaa taatttcgat
      301 aaaacaaacg ataatcattc tcccgggaat ctttgatggc tttttgctgc aaccattgca
      361 gtgaaggcag caaagcctgt tcggccgcgg catccagttg tttcagttca ctcgtttgaa
      421 taagcagtcc aatgagctgt tgctggtctt tgacggccgc attgctttgc atgcccgatg
      481 cttgcgccag agcctgccgg gccgcggcat agtcgccccg catgtattgc aggtaggcta
      541 cacccgtggc aaacaaaggc ctattcggta cccgggcatc tttggtcatt tgttcgaagc
      601 tggcgatgca ggccagaaca tgttcatcac gaggcaaaat ggaatctctt tcgtaccagc
      661 tgaagtagta gggcctgctg ccttcctgtt tttcgatgtg aggggtcagg tacttttctt
      721 ccagtttgtt catttcgcga atggcaagca aaggcagcag ttcgcaggaa ggatccagtg
      781 cgtaggtcct ctgcaaaatg ggtagctgcc aggcttctcc aaacaatcca aacagggcgg
      841 tttcataggc tttctcctgc tggttgggtg ccagcgccgt gtacttttca atcaactcag
      901 ggttgcagcg atcggtgctc cacaaaaagc cgaggaagat tttctttttg tcggcagggg
      961 acgctttggc aaaaagcctg ctgaaggaat aagcggcctc cgcgcctttg cccattcgga
     1021 acaaggcccc tgctttgtac gaaaaggcga ggggttgcac cgctgtttgg ttggtgttat
     1081 caaaggatgc atcataccag cccacacaat ctttgagccg gttgttgtag aaagccagct
     1141 tcacccgcag gaaggcgtac cggtttttca gaaaaggatc ggttgttttg gaaaagcctg
     1201 tattggcctg gctgatgtag ccgtttattt tcaggctgtc gcggggaggg gcatcgctcc
     1261 actggtcggg cgtagtgcaa aaaggttcga tggtctttgc cagcagcagg tattgcaagg
     1321 cctccgcttt cttttctttc agcagggcct gcgccatgct gttgcttttc agtttgggag
     1381 aaaggggagt agtcggtgtt ttcaatgccg tgatgagctg cttcacctcc gcggtgtttg
     1441 ctttgtacac caaatgagcg gcgtcttcgc ggcttacttt cccgccggcg tattgctgcc
     1501 attcggctac aatattttcg ttcacttcgc ttaccgcttc ctcttcactc cagtcgtcgt
     1561 aaaaatcaag cagtgaagta tagaagaaag gccgggctcc tttgtcttca atcatttctt
     1621 tcgataagaa gctggcatag taatcatgcg gttccatcat cggcccgcag ccaatcatgt
     1681 tttgcggtac cgccagggcg gcgctaatga gcaaagccgg aataaaaacg ttccaacgca
     1741 tcagggtcat agtgggcaag gtttttggca tcgaggtggt agaggataat gttttgttcc
     1801 tggcagttgc gctgcgcttt cagcaggcga atggctttgt ctatttcagc ggcatcgctg
     1861 ccttcgtagc gcaaccagtc accggcttta aagttatagc cgttgaaact ggtatccttg
     1921 ggcgccctcc atttttttga atccgttggt tgtagcgttt ccgcgtacac caggcccatg
     1981 tattcatttc ccctgaacca tacccaccag tcgaacaacg gcagcgccat atccaagggc
     2041 aaggggtatt ccctggcacg accaatgtat tgctccagca cactggtttc aatgatggag
     2101 tttttggttt ccggtttggt gagattgccc atgttgtagc acattagcaa tccgcggtcg
     2161 gcagggggca cgccggtttc gtttcggtat ttcacctggt gcagccggat ggttgccgac
     2221 aggatcttgt ctttgaaaaa atccgttttc ttcagcaatt gcagcagcag gaagtatttg
     2281 tctttggtcg tggccgtcca gtcgcaatcc acctgtattt ctttgggagc gggcaactgg
     2341 ttgttgctga gctggctgct gagcaactgc ggaattttca atgccagttg cgccagttga
     2401 tccgcactgc attgctgtaa agtttcattt gtaatgaaaa ccaccggcac aaccgaaacg
     2461 ccacttggtg gcttttgtga aaactgaatt ttagcaatgg gtgccggttg cctgctcagc
     2521 tcatcccagc ccacatcaaa aaatttgatg tacagttttt cggtgcgcag tgtttgcagg
     2581 gccgatgctt ccgtgctgtc cagtgcaaac cggctcttcc aataataaaa cccacgatga
     2641 acaacaggct catcgtgggt tttacaggaa agcaggcaga ttactgccaa tataattatg
     2701 gtgaagtgcc gtgtcacagc aactaaataa atcagaaatc agacatcagc catgcacaaa
     2761 tttttacgca ggttccaccc atgcttcatt ttccttcagc aaattgatca gttcatctac
     2821 cgccacctcg ctgtccacat ttcgctttac aatctctttg cctttgtaca atgtgatctt
     2881 gcccggaccg ctgcctacat agccaaagtc ggcatcggcc atttcaccgg gaccgttcac
     2941 aatacagccc atgatggcaa ttttcacgcc tttcaaatgg ttggtgcggc tgcgaatttt
     3001 tgcggtggtt tcctgcaggt caaacaaggt gcggccgcag ctcgggcagc tgatgtattc
     3061 tgttttactg atgcgggtac gcgtagcctg cagtatgcca aaggcagtat tgttgatgaa
     3121 ctgctccggc gtggcgttgt tcaggtaatt gcggccactc gcattcacca cggtggcgct
     3181 ttcatagctg gcggcactca tgcccaagca aatgccatca ccaaaaccat ccagcagcag
     3241 ggcaccggtt tcagtagcgt agtgtatcaa atgctcatcg gcggtttgcc agttgctgtc
     3301 ggtaatgagc accacgggat tcttgatgtc gcgggcctgc agctccatga acatgcggcg
     3361 cacggcctgc atggcattgt tgcgggtgct gctcaggcaa agcaccaccg ttggatcgtt
     3421 ggctacttca tcgaggaagg taaaatcgtt gatgctcgta tcgtcgttga agcaatcgat
     3481 catcacgaag ttcatccggt cgctttccat ttcggcttcc acaaatccat gaatatcgaa
     3541 gatggggaag tacttctctt tatccgaagc agcctcccaa tggttgggcc aggtgatcac
     3601 tttcagcgtg ccaggcaatg caaaatccag ctcggccttg ccggtaaaaa tgtaatcggc
     3661 cgccatatcg ccaatgctcc acttatcggt aatggcatcg tagctgtacc caatgctgag
     3721 gagcgactgc ggcgtgatct tgtccagctt gctcaggtcg gctatcacca ccggcacctg
     3781 cttgccgcct atgttgccca cttcaaatgt ggagcggcgt ttgtactcga aaggggaata
     3841 tttcagtgcg gtaccaggag taggcaaacc tgcatttgtt tccttgcggt tgtcttgcgg
     3901 ctggtagcgt ttcacgagat cgcggcacac cggtatctca aactcggggt cttctgt
//
LOCUS       DATIQF010000097         3913 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_184154,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000097 DATIQF010000000
VERSION     DATIQF010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3913
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184154"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..212)
                     /locus_tag="VLL95_01525"
     CDS             complement(<1..212)
                     /locus_tag="VLL95_01525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37565.1"
                     /translation="MIEYNFWWKVVTNISLRYLLLATLTFVVCYFLLRKPLSKRKIQQ
                     AFPRMNDYARDIVFSLFSIIIFSSIA"
     gene            complement(454..2835)
                     /locus_tag="VLL95_01530"
     CDS             complement(454..2835)
                     /locus_tag="VLL95_01530"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF001955.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_function: GO:0009678 - diphosphate hydrolysis-driven
                     proton transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-translocating pyrophosphatase"
                     /protein_id="HSR37566.1"
                     /translation="MENLIYAVPAMGIIGLLYTFLKFKWVSNQDAGNDRMKEISRYIA
                     EGAMAFLKAEWKILGYFVALVAILLGVMSMSNENSHPLIAGAFVLGAVFSATAGYIGM
                     RIATKANVRTAQAAQSSLSKALNVSFTGGAVMGLGVAGLAVLGLGALFIVFKMLFVPA
                     GAAVTGSEMLRTIEVLTGFSLGAESIALFARVGGGIYTKAADVGADLVGKVEAGIPED
                     DPRNPATIADNVGDNVGDVAGMGADLFGSYVATVLATMVLGQETTAVDAFGGLSPILL
                     PMLIAGIGLIFSIVGTLFVRISDNAGINTDTVQKALNMGNWGSIVLTAFASAGLVYWL
                     LPETMTLRGSEFSRNGVMGAIVVGLAVGTLMSIITEYFTAMGKRPVLSIIRQSATGHA
                     TNVIGGLAVGMESTMLPILVLAGGIYGSYACAGLYGVAIAAAGMMATTAMQLAIDAFG
                     PIADNAGGIAEMSELPKEVREKTDILDAVGNTTAATGKGFAIASAALTALALFAAFVG
                     VAGIEGIDIYKADVLASLFVGGMIPFIFSSLAIRAVGEAAMAMVEEVRRQFRTIPGIM
                     EGKGKPEYDKCVAISTEASIKKMMMPGAIAILSPLAIGFIMGPEALGGFLAGATVSGV
                     LMGMFQNNAGGAWDNAKKSFEKGVEINGEIYFKKSEPHKASVTGDTVGDPFKDTSGPS
                     MNILIKLMSIVSLVIAPTLAQVHGTKAHGHAAQKTVEVTVTHAEQDGAEADAPFINAL
                     KADGLIDGKSFSIELSNNKLVINGTEIDSTTAAKYKALLKDGQQELKIEVKEK"
     gene            complement(2992..3504)
                     /locus_tag="VLL95_01535"
     CDS             complement(2992..3504)
                     /locus_tag="VLL95_01535"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HSR37567.1"
                     /translation="MPRPAEGDYAPLYENYVRLATGDDVFTVLNRSWDQLGLWLGGIP
                     EEKLSYSYAPGKWTVAQMLQHLIDSERVFAYRAMCFARGEKSSLPGFDENAYAERATA
                     EHRSLIAMKEELLALRKATITLYNSFTREDLAESGIAFGYRVTVNAMGYIMAGHIYHH
                     QRIYEERYLA"
     gene            complement(3523..>3913)
                     /locus_tag="VLL95_01540"
     CDS             complement(3523..>3913)
                     /locus_tag="VLL95_01540"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HSR37568.1"
                     /translation="DSSIKNTLVADFTNYGPHTVDVMAPGVKIYSTVPQGNKYSFQQG
                     TSMAAPVVSGIAALLLSYFPTLKATDVKQIIETSVDKRYAEVAFAKPGTEEKEKKETL
                     TFSQLCATGGIVNAYNAVKLAMNWKKN"
BASE COUNT         1016 a         1000 c          952 g          945 t
ORIGIN      
        1 taggcaatac tggaaaaaat aatgatcgag aaaagactga aaacaatatc cctggcgtag
       61 tcattcatcc tggggaatgc ctgctggatt tttcgtttgc tcaacggctt tcgcagcaaa
      121 aaatagcaga ctacaaaagt gagggtggcc agcagcaaat accgcagtga aatattggtg
      181 accactttcc accagaaatt gtactcaatc atgttgaagc cattttcgtt caaattacaa
      241 ggatccttgc aatcgtaaag atgcaaaaag aaaagccccg acgtggacac gacgggactt
      301 ttggaatggt ttgattaaga tttgaaggac aatgtaggaa tatttttcaa caagcccgat
      361 agattattgc aggcgggcca ttcaccggta agcataaaaa aatgccggct catacagaac
      421 cggcattttc atatgaaaca gacagcagcg tccttacttt tctttcacct caattttcaa
      481 ttcctgctga ccgtctttca acaaggcctt gtatttggca gcggtagtgc tgtcaatttc
      541 tgtgccgttg atcaccagtt tgttgttgct cagttcaatg ctgaagctct tgccgtcaat
      601 caggccatcg gctttcaagg cattgatgaa aggagcatcg gcttctgcgc catcctgttc
      661 tgcatgggtt acagttacct caacagtctt ctgagcagcg tggccatgcg ccttggtgcc
      721 atgcacctgc gccagtgtag gagcaattac cagcgacacg atagacatca gcttgatgag
      781 gatgttcata gaaggacctg aggtgtcttt aaatggatca ccaacagtat cacccgttac
      841 agaagccttg tgcggttcgc tcttcttgaa gtagatctcg ccattgatct ctacgccttt
      901 ttcaaagctc ttcttggcat tgtcccaggc gccaccggcg ttgttctgga acatacccat
      961 caatacgcca cttactgtag caccggccaa aaagccaccc agtgcctcag gacccatgat
     1021 gaaaccgata gcaagaggag aaagaatggc aatagcgccg ggcatcatca ttttcttgat
     1081 cgaggcttcg gtagaaatag caacgcattt gtcgtactcg ggtttgcctt tgccttccat
     1141 aatgcccgga atggtacgga actggcgacg tacttcttcc accatggcca tggccgcttc
     1201 gcccacggcg cggatggcca gtgaagagaa gatgaaagga atcatgcccc ctacgaaaag
     1261 gctggccagt acatcggcct tgtaaatgtc aatgccttcg ataccggcta cacctacaaa
     1321 cgctgcaaac aaagccaggg ccgtaagggc agcagaggca atggcgaaac ctttaccggt
     1381 agcagcagta gtattaccaa cggcatcaag gatgtccgtc ttttcacgca cttctttggg
     1441 cagttcgctc atttcagcaa taccaccggc gttgtcggcg atggggccaa aggcgtcgat
     1501 ggccagctgc atggcagtgg tggccatcat accggcagca gcaatggcca caccgtacaa
     1561 accggcgcag gcatatgaac cataaatacc acccgccaaa acaaggatag gcagcatggt
     1621 gctctccata cctactgcca aaccgccaat cacgttggtg gcatggccgg tagcgctctg
     1681 gcggataatg ctcagcacag ggcgcttgcc cattgcggta aagtattcgg taatgatgct
     1741 cataagggta cccacagcaa gacccactac aatagcaccc ataacaccat tgcggctgaa
     1801 ttcagatccg cggagggtca tggtttcggg cagcagccag taaaccaaac cggctgatgc
     1861 aaaagcagtg agaacgatag aaccccagtt gcccatgttg agggctttct gaacagtatc
     1921 agtattgatg cctgcattgt cgctgatgcg aacaaacagg gtacctacaa tagagaagat
     1981 gagaccgatg cctgcaatga gcatgggcag caaaatggga gaaagaccac caaaggcatc
     2041 aacggcggtg gtttcctggc ccagtaccat ggtagccaaa acggtagcta cataggaacc
     2101 aaaaaggtca gcacccatac cagctacgtc acctacgttg tcgcctacgt tatcggcaat
     2161 ggtggcgggg ttgcgggggt catcttccgg aatacctgct tccactttac ccacgaggtc
     2221 agcgcctacg tcggcagcct tggtataaat accaccgcct acccgggcga agagggcaat
     2281 ggattcagca cccagtgaga agccagtaag tacttcgata gtacgcagca tttcgctacc
     2341 agttacggca gcgccggcgg gcacaaaaag cattttgaaa acgatgaaga gcgcaccgag
     2401 gcccagcacg gccaggccgg ctacacccaa acccattaca gcaccaccgg taaaggacac
     2461 attcaatgcc ttactgaggc tgctttgcgc tgcctgggcg gtacgtacgt tggctttggt
     2521 ggcaatccgc atgccgatat aacctgcggt agcactgaat acggcaccca gtacaaaagc
     2581 gccggcaata aggggatggc tgttttcatt gctcatggac attacgccca gcaatatggc
     2641 caccagtgcc acaaaatatc ccaggatttt ccattctgcc ttcaggaagg ccatagcgcc
     2701 ttcagcaatg tacctgctga tttccttcat gcggtcgttg cccgcgtcct ggttgcttac
     2761 ccatttaaac ttgaggaacg tgtacagcag ccctatgatt cccatagccg gtacagcgta
     2821 gatcaaattc tccataataa tgtttatctg ttttttgaaa aggtgggcaa agataggggt
     2881 tggccccata ggaccgctca agaaagcaaa ggctggggaa agcttttgtc ctttccccag
     2941 ccggctcaaa ttagcaggac ctttcctgcc agggttctgc agcaaaactg cttatgccaa
     3001 atagcgttct tcgtaaatac gctggtggtg gtaaatatgt cctgccataa tgtaacccat
     3061 ggcgttgaca gtaacccggt atccaaaagc aatgcctgat tcagcgagat cttcgcgggt
     3121 gaatgaattg tacaatgtga tggtggcctt gcgcaaagcc agcaattctt ctttcatggc
     3181 aatcaaactg cggtgctcag cagttgccct ttctgcgtat gcattttcgt cgaagccggg
     3241 aagcgaactt ttttcgcccc ttgcaaagca catggccctg taggcgaaaa ccctttctga
     3301 atctatcagg tgctgaagca tttgtgccac ggtccacttt cccggagcat aggagtagga
     3361 aagcttttct tcaggaatac cgcccagcca aaggccgagt tgatcccagg aacgatttaa
     3421 aacggtaaaa acatcatctc cggtggcaag ccgaacataa ttttcataca agggtgcata
     3481 gtcgccttct gctggtctgg gcataatcaa tcagtttttc aatcaatttt tcttccagtt
     3541 catggcaagc tttacagcat tataggcatt tactattccg cctgtggcac acaattgtga
     3601 aaacgtcagg gtttcttttt tctctttctc ctccgtgcca ggcttggcaa atgccacttc
     3661 tgcatatcgt ttgtctaccg atgtttcaat gatctgtttt acatcggtgg ctttcagtgt
     3721 ggggaagtag ctcaaaagta atgcagcaat tccacttacc acaggggctg ccatacttgt
     3781 tccttgctga aaggaatatt tatttccttg cggtaccgtt gagtagatct ttacaccggg
     3841 tgccatcacg tccactgtat gggggccata gttggtaaaa tcggcaacca gcgtgttttt
     3901 gatgctgctg tcg
//
LOCUS       DATIQF010000098         2176 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_244958,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000098 DATIQF010000000
VERSION     DATIQF010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244958"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..429)
                     /gene="nadA"
                     /locus_tag="VLL95_01545"
     CDS             complement(<1..429)
                     /gene="nadA"
                     /locus_tag="VLL95_01545"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: protein motif:HMM:NF014498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HSR37569.1"
                     /translation="MAVIDMELARSQVQSRGFLDVEVDPTLDLFAEIERLKKEKNAII
                     LAHYYQEPDIQDVADYIGDSLGLAQKARDTDADIILFAGVHFMAETAKILNPGKKVVL
                     PDLKAGCSLSDSEPPEVFAKWRQNYPDHVVVTYINCSAGMK"
     gene            1011..>2176
                     /locus_tag="VLL95_01550"
     CDS             1011..>2176
                     /locus_tag="VLL95_01550"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HSR37570.1"
                     /translation="MSIIQSIRDKAAPVVIGVIALSLIGFILMDAGRRGFGSNVSPKD
                     AIGSINGESISYEQFMAKIKQNEQAYEMNGRTVDENTRQQIYGDTWRQMIETTLLDQE
                     FAKLGITVSDKEFNDLLFGKNPPEFLKQQFTNPSTGEFDVAAAKQAINELKKSKNNSN
                     RDMVNQFYLDPLVDGTKRQKFFALVQNSAYIPKWMAEKTIADNALIASLSFVSVPYST
                     VADSSVKVSDEQILDYVKKHKSEFEQDEKSRSIAYVAFSFTPSAADTAEVLKNLGDLK
                     EEFRTTQDPGAFVTRSGSTLPFFDGYNSKNRIQIPEKDSIIGAGVGNVYGPYLDVQSY
                     VLSRVVDVKTLPDSVRAKHILIGTYDPRTQQPKLDDSTAKKKIDSVQALINGGA"
BASE COUNT          552 a          455 c          532 g          637 t
ORIGIN      
        1 cttcatgccg gcgctgcagt tgatataggt caccaccaca tggtctgggt agttctgcct
       61 ccatttggca aatacttcgg gaggttcact gtcgctgagg ctgcatccgg ccttcaggtc
      121 gggaagaacc acttttttac cgggattaag gatcttggcc gtttctgcca tgaaatgaac
      181 gccggcgaaa aggataatgt cagcatcggt gtccctggcc ttttgggcca gacccaggct
      241 atcgccaata tagtcagcta catcctgaat atcgggttcc tggtagtagt gtgccaggat
      301 gatcgcattc ttttcctttt tcaggcgctc tatctctgca aacaaatcca gggtgggatc
      361 tacctccaca tccaggaagc cccgggactg cacttgcgac ctggccagtt ccatgtcaat
      421 aactgccata gtattcttta ttaattatta tttatataac ccactaatac tattatgggt
      481 gttgatatcg ggaaattggt ttcccattgt tttacaaatg tagtttgtac accccgatcc
      541 acagttttcc tcatggttgc acacatgatc gttccttact actggcgttt tctatgctgt
      601 ttatcctcag ttgtgtgttt ctgaattcac agtgtttttg tgaataggcg gcaatcaacg
      661 agctgtgtgg attagtgtta ttcgattttc ttgagagagg ccaatgggta tttgaaggag
      721 ttttggcagg cctacttttc agttttttgc acacaatagc ggcctttgaa tagtcgagtt
      781 gtacactgtg ttaaaggaat attaacagct gttttgaatc agcgtttcac atgggtgttc
      841 catggcaagg gattccggcg tgtgggtttt tgttttgata gttctggggc attttcaggg
      901 ttcgttggga ggcttgactg tattggtttc agggctgttt tccacaattt tttcatagag
      961 tcgattcccc ctatttttgc catcctttta aaattgtata gactcatatt atgtccatca
     1021 ttcagtcaat cagagataag gcagcacctg ttgtgatcgg tgtgattgcg ctcagtctta
     1081 ttggatttat ccttatggat gccggccgtc gcggttttgg cagcaacgtt agtccgaaag
     1141 atgccatagg ttccataaat ggtgaaagca tcagctatga acagtttatg gccaagatca
     1201 agcaaaatga acaggcttat gaaatgaatg gcaggacggt agatgaaaat acccgccagc
     1261 agatctatgg tgacacctgg aggcaaatga ttgaaacgac gctcttggac caggaatttg
     1321 ccaagttggg tatcacagta agtgataaag aattcaatga cttactgttt ggtaagaatc
     1381 cacctgagtt cttgaagcag caatttacca atccttccac tggggaattt gatgtggctg
     1441 cagccaagca ggctattaat gaactgaaga aaagcaagaa taacagcaac cgtgacatgg
     1501 tgaaccagtt ttacctcgat ccgctggtag atggcacgaa gcgccaaaag ttctttgcct
     1561 tggtgcagaa cagtgcgtat atccctaaat ggatggctga aaaaacaatt gctgataatg
     1621 ctttaatcgc cagcctttct tttgtaagtg ttccatacag caccgttgcc gatagcagtg
     1681 taaaggtttc tgatgagcaa atcctggact atgtcaaaaa acataagtct gaatttgagc
     1741 aggatgagaa atcacgcagc atcgcatatg ttgctttctc tttcactcct tcagccgccg
     1801 atactgcaga agttttgaaa aacctgggtg atttgaagga ggagtttcgt accactcaag
     1861 atccgggtgc ttttgtaacg cgcagtggca gcaccttgcc attctttgat ggctacaaca
     1921 gtaagaacag gatccagatt cctgaaaagg attccatcat tggtgcaggc gtgggtaatg
     1981 tttacggacc ttacctggat gtgcagagtt acgtgttgag ccgtgtggtg gatgtaaaga
     2041 cgttgcctga cagtgttagg gcgaagcaca ttctgattgg tacttacgat ccgcggacgc
     2101 agcagcccaa actggatgat tcaaccgcca aaaagaaaat tgacagcgtg caggcattga
     2161 taaacggcgg tgccga
//
LOCUS       DATIQF010000099         1707 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_1674, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000099 DATIQF010000000
VERSION     DATIQF010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1674"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..689
                     /locus_tag="VLL95_01555"
     CDS             <1..689
                     /locus_tag="VLL95_01555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37571.1"
                     /translation="YADASRIYGLELEHLLSPNRITFLTSGDTLIEEHIPGIPGDVFI
                     NQYLKDESLNKIRLAKEFVKFNERCFVRLLGDMRSYNFVVNVTPDVEDYQYRIRPIDF
                     DQQSYEGRRNLYLPQFLKENLPLVDLTLKSLNRDSIEQHQAEERTLMAFRLVAARYRV
                     KHLLDIMSNDYLSPQEKTDQLKNELAEYFESSAFLRCKSMGEVVKTNLKATLRKSLLL
                     VPKMRGGYED"
     gene            complement(695..1390)
                     /locus_tag="VLL95_01560"
     CDS             complement(695..1390)
                     /locus_tag="VLL95_01560"
                     /inference="COORDINATES: protein motif:HMM:TIGR00730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HSR37572.1"
                     /translation="MNGVVKSAEPRRWAESKAHSSWQIFKIMAEFVEGFEALSRIGPC
                     ISIFGSARTQPGQPHYELAVEIARELAHEGFGIITGGGPGIMEAGNKGAFLAGGKSVG
                     LNIELPFEQKPNSFIDRDKSLHFDYFFVRKTIFVKYSQGFVMMPGGFGTQDEFFEVIT
                     LVQTNKMHRVPMVLVGREYWKGLVDWINNTMLGENYIHEKDLELFTVVDTPKEVTEYI
                     LNYYTRHKLEPNF"
     gene            complement(1469..>1707)
                     /locus_tag="VLL95_01565"
     CDS             complement(1469..>1707)
                     /locus_tag="VLL95_01565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37573.1"
                     /translation="YGPLLGLFTFGIITKRTVTDKLVPWICIAAPLICFFIDKYQQQL
                     FGSFEIGLELLIINGLLTFIGLWMVSSKPSNAQA"
BASE COUNT          423 a          419 c          430 g          435 t
ORIGIN      
        1 agtatgccga tgcctcccgc atttacgggt tggagctcga gcatctgctg tctcccaatc
       61 gcatcacttt tctcaccagt ggcgatacgc tgatagaaga acacatacct ggcataccag
      121 gcgatgtgtt catcaatcaa tacctgaaag atgaatcgct caataagatc aggctggcga
      181 aggagtttgt gaagttcaat gaacgctgtt ttgtgcggtt gctgggcgat atgcgcagct
      241 acaattttgt ggtgaacgta acgcccgatg tggaagacta tcaataccgc atccggccca
      301 tcgattttga tcagcagagc tatgagggcc gaagaaacct ctacctgcca caattcctga
      361 aagagaattt gccgttagtt gatctcaccc tcaaaagcct gaaccgcgat tcgattgaac
      421 aacaccaggc tgaagaaaga acgctgatgg cattcaggtt ggtggcggcc cgctaccgag
      481 tcaagcattt gctcgacatc atgtccaacg attacttatc gccgcaagaa aagaccgacc
      541 agttgaaaaa tgaactggcc gagtattttg aatccagcgc tttcctgcgt tgcaaatcga
      601 tgggcgaagt ggtgaagacc aacctgaaag ccacgttgcg caaaagcctg ctgctggtac
      661 ccaaaatgcg gggcggctac gaagattgag tcgcttagaa attgggctcc agtttgtgcc
      721 tggtgtagta gttgagaatg tattccgtta cttccttcgg tgtatccact acggtaaaca
      781 gttccaggtc tttttcgtga atatagtttt cgcccagcat ggtgttgttg atccagtcga
      841 ccaaaccttt ccagtattcg cggcctacca gcaccatggg tacacggtgc attttgttgg
      901 tttgcaccag cgtgatcact tcaaaaaatt catcctgcgt accaaaacca ccgggcatca
      961 tcacgaagcc ctgcgagtat tttacaaata tggttttgcg cacaaagaag taatcgaaat
     1021 gcaaactctt gtcgcggtcg ataaagctgt tgggtttttg ctcgaagggc aattcgatgt
     1081 tgaggcctac cgacttgcca cctgccagga aggcaccttt gttgccagct tccataatgc
     1141 cgggtccgcc gccggtgatg atgccaaatc cttcatgcgc cagttcacgg gctatttcca
     1201 cggccagttc ataatggggc tgcccgggtt gtgtacgggc actgccgaag atgctgatgc
     1261 aagggccaat gcgtgaaagc gcttcaaagc cctccacaaa ctcggccatg atcttgaata
     1321 tctgccagct gctgtgtgct ttgctttccg cccatcgccg gggttctgct gattttacta
     1381 ctccgttcat cgcttactca tttttactgc taacgctgta tcgtcaacag ggttgtgttt
     1441 gacaggtata tgtgcccgaa tttaacactc atgcttgtgc attcgagggt ttggaagaaa
     1501 ccatccacag gccaatgaag gtgagcaggc cgtttatgat caacagttcc aaaccaattt
     1561 cgaaggagcc aaacagttgc tgctggtact tgtcgataaa aaagcagatc aatggggctg
     1621 ctatgcagat ccagggtacc agtttatcgg tcacggtgcg tttggtaatg atgccgaatg
     1681 tgaacaagcc gagcaatggg ccgtagg
//
LOCUS       DATIQF010000100         3277 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_168859,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000100 DATIQF010000000
VERSION     DATIQF010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3277
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168859"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..827
                     /locus_tag="VLL95_01570"
     CDS             <1..827
                     /locus_tag="VLL95_01570"
                     /inference="COORDINATES: protein motif:HMM:NF013961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transglutaminase-like domain-containing protein"
                     /protein_id="HSR37574.1"
                     /translation="PIKKYYTGKLNEILKPSFAGSNSTLDSARQIALALSTQPTKGHG
                     TDQSDDLLNCVSLVAKGFGKCSDYAQSFAAACLENNIMVREVSNMTHTFNEIYLSSQN
                     KWVFFDAQYCLTAHDNAGNWLSALDIFNAYANHTPFSFSSFAPYHKFQSELQDIDGFY
                     EVNGNSDAYQYLVVTNGINVFQVNKWNQYLNLIPKPARQFVLLSLGIQPGYLVYDPNN
                     QIRPSLMLYRFAFVFAILLVFLINLAAFRLWSRTANRKSTEDEGAQFIPQPSFARA"
     gene            complement(921..2903)
                     /gene="gyrB"
                     /locus_tag="VLL95_01575"
     CDS             complement(921..2903)
                     /gene="gyrB"
                     /locus_tag="VLL95_01575"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF004189.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009330 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) complex [Evidence
                     IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HSR37575.1"
                     /translation="MSTENQDLQPQQPSGYGADSIQVLEGLEAVRKRPAMYIGDVGVK
                     GLHHLVYEVVDNSIDEALAGYCKNISVTIHEDNSISVQDDGRGIPTAMHTKEKRSALE
                     VVMTVLHAGGKFDKNTYKVSGGLHGVGVSCVNALSTKLHVTVQREGKVFEQEYKIGVP
                     QYPVREIGTSEVTGTRVQFWPDLSIFSSGIYNKEILQGRLRELAYLNRGIRITLTDLR
                     EIVEETNEPYQAEFYSEGGIVEFVQMLDDTANRTNLIPTPIFCEGRDEATNVAVEVAM
                     NYNSSYSEHIFSYVNNINTIEGGTHVTGFRQAITRVFKTYGDKEGMFEKAKVEIEGDD
                     FREGLSAVISVKVPEPQFEGQTKTKLGNSDVAGTVQTTLSSALQNFLEENPKEAKTII
                     QKVILAAQARAAARKAREMVQRKSGLSGGGLPGKLADCSEKDPSKCELYLVEGDSAGG
                     TAKQGRDRSFQAILPLRGKILNVEKAMEHKIYDNEEIRNMFTALGVKIGTPEDPKALD
                     LSRLRYHKLIIMTDADVDGSHIATLILTFIFRYMKELVENGYVYIAQPPLYLVKKGKN
                     QEYAWNEEQRKALIEKLGAGSESGIVVQRYKGLGEMNADQLRDTTMNPENRTLKQVTI
                     ESAAEADRIFSMLMGDEVAPRREFIESHAKYAKLDI"
BASE COUNT          725 a          893 c          771 g          888 t
ORIGIN      
        1 accccataaa gaaatactat acaggaaaac tcaatgagat cctgaagcct tcttttgccg
       61 gatctaatag cacccttgat tctgccaggc aaattgctct tgcattaagc acccagccca
      121 caaaaggtca tggcaccgat cagtctgacg acctgctcaa ctgcgtttca ctggtggcaa
      181 aaggatttgg caaatgctca gactatgcgc aaagtttcgc ggcggcttgt cttgaaaaca
      241 acatcatggt tcgggaggta agcaacatga cccacacctt caacgagatc tatttatcca
      301 gccagaacaa atgggtcttt tttgatgcgc aatactgcct aaccgcccat gacaatgccg
      361 gtaattggtt atcggcattg gacattttca atgcttatgc caaccacaca ccgttcagct
      421 tttcctcctt cgccccttac cacaaattcc agtcagaact gcaggatatt gatgggtttt
      481 acgaagtcaa tggcaacagc gatgcatacc aatacctggt cgtcaccaat ggtatcaacg
      541 ttttccaggt aaacaagtgg aaccagtatt tgaacttgat ccctaagcca gccaggcaat
      601 ttgtcctgtt gtcattgggc attcagccag gttatcttgt ttatgatccc aacaaccaaa
      661 taaggcccag cctaatgctt taccggtttg cttttgtatt cgccattttg ctggtattcc
      721 taatcaacct ggcagccttc aggctgtggt caagaacagc caatagaaag tcaaccgagg
      781 atgagggtgc ccaattcatt ccccaacctt ctttcgcccg tgcctgatgt aacagcatgg
      841 cgccagtttg tctttaaatg ttgaaacccg ctgtcagcaa ggctttcagc gggtttcagt
      901 gtattcaggt ttgatagctg tcagatatcc agtttggcat atttggcatg gctttcaatg
      961 aactccctgc ggggagccac ctcatcaccc atcagcatgc tgaaaattcg atcggcttcg
     1021 gcagcacttt caatggttac ctgcttcagc gtacggtttt caggattcat ggtagtgtct
     1081 cgcaactggt cggcattcat ttcacccaaa cccttgtagc gctgaaccac aatcccgctt
     1141 tcgctgccgg cccccagttt ttcaatcagg gctttgcgct gttcttcatt ccaggcatac
     1201 tcctggtttt tacccttttt caccaggtaa agcggtggct gggcaatgta tacataccca
     1261 ttttccacca gttctttcat gtagcggaaa atgaaagtga gaatcaaggt cgcgatgtgg
     1321 ctgccatcca catcggcatc ggtcatgatg atgagtttgt gatagcgcag cctgctcagg
     1381 tcaagtgcct tgggatcttc aggagtacca atcttcactc caagcgccgt gaacatgttg
     1441 cggatctcct cgttgtcgta gatcttatgc tccatggcct tctccacgtt caggatttta
     1501 ccccgcaagg gtagaatggc ctggaaactg cggtcgcggc cctgcttggc agtaccaccg
     1561 gccgagtcac cttccaccag gtagagttcg catttcgaag gatccttttc agagcagtcg
     1621 gccagtttgc cgggcagtcc gccgccactc aggccgcttt tacgctgtac catctcgcgg
     1681 gccttgcggg ctgcggcacg tgcctgtgcg gcaaggatca ctttctgaat gatggtcttg
     1741 gcttccttcg ggttctcctc caaaaagttt tgcaatgcgg agctcagtgt ggtctgcacc
     1801 gtgccggcca catcactgtt gcccaacttg gttttggtct gaccttcaaa ctggggttca
     1861 ggtactttta cactgatcac tgcactcaag ccttcgcgga agtcatcgcc ttcaatttcc
     1921 accttggctt tttcaaacat gccctcttta tcaccgtagg ttttgaacac acgggtaatg
     1981 gcctgccgga aaccggttac atgcgtaccg ccttcgatgg tattgatgtt gttgacgtag
     2041 ctgaaaatgt gttcgctgta gctgctgttg tagttcatgg ctacttccac cgctacattg
     2101 gtggcttcat cccttccttc acaaaaaatg ggcgtaggaa tcagattggt gcggttggct
     2161 gtatcatcca gcatttgcac aaactccaca ataccacctt cgctgtaaaa ctcagcctgg
     2221 tagggttcgt tggtctcttc tacgatttcc ctgagatcgg tcagcgtaat gcggatgcct
     2281 ctgttgaggt aagccaattc gcgaagacga ccctgcaaaa tctctttgtt gtaaataccg
     2341 gagctgaaaa tgctcaggtc gggccaaaat tgcacccggg taccggtaac ctcgctggtg
     2401 cctatttcac gcacaggata ttgcggaacc ccaatcttgt attcctgctc aaatactttg
     2461 ccttcgcgtt gcacggtaac gtgcagtttg gtgctcagtg cgttcacgca actcacgccc
     2521 acaccgtgca agccgcccga aaccttgtag gtattcttgt cgaacttacc accggcatgc
     2581 agcacggtca ttaccacttc cagcgcactg cgcttttctt tggtgtgcat ggcggtaggg
     2641 ataccacgac catcatcctg cacgctgatg ctgttgtctt cgtgaatggt aacgctgatg
     2701 tttttgcagt aaccggccag ggcttcgtcg atggagttgt ctaccacttc gtacaccagg
     2761 tggtgcagac cctttacgcc cacatcgcca atgtacatcg cgggcctttt gcgcaccgct
     2821 tccaaacctt ccaatacctg tatactgtcc gcaccataac cactgggctg ctgcggttgc
     2881 aaatcctgat tttctgtact cataagggaa agatcacccg ttgtttttag cgaaaattct
     2941 gtttttgtcc ggaccatgct gcaaggctca tcatccctgc ccgactgtca ggcggggttg
     3001 cgtcgcacac ttcagcggca gtgcaaaact gcccctgccc ggaggcgggc aaatgtaacg
     3061 aaatgggggc agttgggcca atggaaaaac accccgaaat ggccaacttt tccccaattt
     3121 aagcggcttt tgcaggcccc ggcagtatgg tcttctcttt tggcaaaaac ggggtcgttc
     3181 accggggctt ttcgaagcaa aggcaatgct gccaggggag atttgtcatg tttttcagca
     3241 atcggaagcc ggctgcctgc cactctttta cggcttg
//
LOCUS       DATIQF010000101         2434 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_92888, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000101 DATIQF010000000
VERSION     DATIQF010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2434
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92888"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..495
                     /locus_tag="VLL95_01580"
     CDS             <1..495
                     /locus_tag="VLL95_01580"
                     /inference="COORDINATES: protein motif:HMM:NF016064.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE thiosulfate transporter family
                     protein"
                     /protein_id="HSR37576.1"
                     /translation="ALLMLGNRSFGISSSLRHICAACVPAKIPFFTYDWKKEVWNLFF
                     VAGILVGGFLAAQFLANPEPIAIHPDLATDMAAYGISDTNHIVPADLFSWSALGTLRG
                     FIMIVLGGFLVGFGTRYAGGCTSGHAIMGLSTLQWPSLVATCCFMAGGFIMTHFILPY
                     ILAL"
     gene            526..1068
                     /locus_tag="VLL95_01585"
     CDS             526..1068
                     /locus_tag="VLL95_01585"
                     /inference="COORDINATES: protein motif:HMM:NF042761.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6691 family protein"
                     /protein_id="HSR37577.1"
                     /translation="MKTTDNKQLNVDAANVTGAASNTDFEVRSDNAMCVNQSELDKPI
                     TSNIKYLVYGVLFGIIAVKSEIISWFRIQEMFRFESFHMYGVIGSAVVVGMISVALIK
                     KFKVKSIEGEPITFSKKTFNKGQIFGGLTFGLGWAITGACPGPLYAQIGAGATVIVVT
                     LLSAIAGTWVYGRFREKLPH"
     gene            complement(1206..1907)
                     /locus_tag="VLL95_01590"
     CDS             complement(1206..1907)
                     /locus_tag="VLL95_01590"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HSR37578.1"
                     /translation="MLNKMGYGSIDDVMKHGLVALSVADFKNAWKATDALVIDTRNKD
                     VFPMDFIPGSIFIGIDDTFAPWVGTLIPDLQQAILFLADEGKEEELVIRLARVGYDNC
                     IGYLKGGIEAWMEEGNETDSIQECTPEKFAQYFAEQEGLHLLDVRRQSEFESQHVIGA
                     ESFPLDFINRNMNKLDKNLTYYVHCAGGYRSMIACSILKARGFENLVNIKGGFNALKA
                     TNLPMTQYHAPVTML"
     gene            complement(1935..>2434)
                     /locus_tag="VLL95_01595"
     CDS             complement(1935..>2434)
                     /locus_tag="VLL95_01595"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSR37579.1"
                     /translation="HIDLAKATGATIVYGPSAEPNFKAHVAKDGEVLKVGELEIVVLH
                     TPGHTMESSTFLLRDERGRDVAIFTGDTLFIGDVGRPDLAVKSNLSREDLAGYLYQSL
                     QQKILPLADEVIVYPGHGAGSACGKNMSKETTDTLGHQKAVNYALRKGITREEFVAAV
                     TEGLV"
BASE COUNT          574 a          633 c          578 g          649 t
ORIGIN      
        1 gccttgctga tgttgggcaa cagaagtttt ggcatctcgt cttccctgcg tcacatatgc
       61 gctgcctgcg ttccggccaa aatccccttc ttcacctacg actggaaaaa ggaagtctgg
      121 aatttgtttt ttgtagccgg cattttggtg ggtggtttct tagcagcgca gttcctggca
      181 aaccctgaac ccattgccat ccatcctgac ctggcaacgg atatggccgc ctatggcatc
      241 agcgacacca atcacattgt gccagccgac ttgtttagct ggagtgcact tggtacgctg
      301 cgcggtttta tcatgatagt attgggtggc ttcctcgtgg gcttcggcac acgctatgcc
      361 ggcggatgta cttcgggcca tgccatcatg ggattgagta ccctgcaatg gccttcgctg
      421 gtagctacct gctgtttcat ggccggcggt tttattatga cccatttcat cctgccttac
      481 atcctggcgc tttaagtcat tggcaaaacc acaaaacaat tacgaatgaa aacgacagat
      541 aacaaacaac tcaatgttga tgccgccaat gtaaccggcg ccgccagcaa tacggatttc
      601 gaagttcgat ccgacaacgc gatgtgtgtg aaccaaagcg aactggacaa gccaatcact
      661 tccaacatca aataccttgt atatggtgtg ctgtttggca tcattgccgt gaagtctgag
      721 atcatttcct ggtttcggat ccaggagatg tttcgcttcg aaagctttca catgtacggt
      781 gttatcggca gcgccgtagt agtgggcatg atcagcgtgg ccctgatcaa aaagttcaag
      841 gtgaaatcta tagaaggcga acccatcacc ttcagcaaaa agactttcaa caagggacag
      901 atttttggcg ggctcacttt cgggttgggc tgggccatta ccggtgcctg ccccgggcca
      961 ttgtatgctc aaattggcgc tggcgccacg gttatcgtag ttacgctgct cagcgccatt
     1021 gcaggcacct gggtgtatgg acgattccgg gaaaaactgc cgcactaaaa tcacaaggat
     1081 tcaaacacaa aaggtctgct cagggagcag gccttttttc attgcagtca ttaaaaaaag
     1141 ccctgcaaag aattgcaggg ctattaacca taacacacta tgtaaataat aatttccttg
     1201 aaccatcaga gcatggtaac cggggcatgg tattgcgtca ttggcagatt cgtggccttc
     1261 aacgcgttga atccgccttt tatattgacg agattttcaa agcccctggc tttcagaata
     1321 gagcaggcta tcatagaacg gtatccacct gcgcagtgca cgtaataggt caggttctta
     1381 tccagtttat tcatgttgcg gttgataaag tcgaggggga agctctcggc accaatcaca
     1441 tgttgcgatt caaattcact ctggcgccgc acatccagca ggtgtaggcc ttcctgttct
     1501 gcaaagtatt gcgcaaactt ttcaggggtg cattcctgta tgctgtctgt ttcattgccc
     1561 tcctccatcc atgcttcaat accgcctttc aaatagccaa tgcaattgtc gtatcccact
     1621 cttgccagtc gaatcaccaa ttcctcttct tttccctcat cagccaaaaa caaaattgcc
     1681 tgctgcaagt cgggaataag cgtacccacc cacggtgcga atgtgtcgtc aatgcctatg
     1741 aaaatagaac ccggtatgaa atccatcggg aatacatcct tgttgcgggt gtcaatgacc
     1801 aaagcatcag tggctttcca ggcattcttg aaatcggcga cggatagtgc caccaggcca
     1861 tgcttcatta cgtcatcaat gctgccataa cccattttat tcagcactgc gtttttgggg
     1921 aaatactgcg gtggctatac caatccttcg gtcactgccg ctacaaattc ttcgcgggtg
     1981 atgcctttgc gcaatgcata attcacggcc ttttggtggc ccaatgtatc ggtggtttcc
     2041 ttactcatgt ttttgccaca ggcgctgcct gcaccatgac cgggatatac tatcacttca
     2101 tcggccaacg gcagaatttt ctgctgcagt gattggtaca gataaccagc caggtcttcg
     2161 cggctgagat ttgacttcac cgccaggtcg ggccggccta catcgcctat aaagagtgtg
     2221 tcgccggtga agatggccac atccctgcct ctttcatcac gcagtaaaaa agtggatgac
     2281 tccatggtat ggccgggtgt gtgcagtact acaatttcca gctctcctac tttcaacacc
     2341 tcgccgtctt tggccacatg agctttgaaa ttgggctcgg cgctaggccc atacactatg
     2401 gtggcaccag ttgctttggc caggtcaata tgac
//
LOCUS       DATIQF010000102         2283 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_77737, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000102 DATIQF010000000
VERSION     DATIQF010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77737"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..341)
                     /locus_tag="VLL95_01600"
     CDS             complement(<1..341)
                     /locus_tag="VLL95_01600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37580.1"
                     /translation="MSQVRKIKVMAGNPADKSLTLVPKEVIAWRGDFIVWEIDPYSGV
                     KSIDKIEMKRGAKNVFLAPPHANGKNWTAEIDGEANEDDVCTYSIIWTGIDGKRRVFD
                     PIITIKPTQDQV"
     gene            complement(796..2115)
                     /locus_tag="VLL95_01605"
     CDS             complement(796..2115)
                     /locus_tag="VLL95_01605"
                     /inference="COORDINATES: protein motif:HMM:NF017280.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylxylan esterase"
                     /protein_id="HSR37581.1"
                     /translation="MNPMFRFCTPFRLMAVLLLSLVMHFSMAQPGTPYVKVIVAPDHT
                     DWTYKTGEPVKFTITVLQNGNPVKNAVLKYETGPEKMEPQQKDSLVLPNGSLVVDAGS
                     MKTPGFLRCVALATVNGKTYRGLGTAAFDPLKIEPAASMPADFTTFWDNAKADLAKVP
                     MDARMTLLPDRCTETVNVYHVNLQNYNVGTRLYGILCVPKKEGKYPAILHVPGAGARP
                     YAGDIANAEKGFITFQIGIHGIPVNMDVSVYNNLMSGAIAGYWNYNLDDRDRYYYKRV
                     YVGCVRANDFLVSLPQYDGSNLAVTGGSQGGALSIVTAALDQRVKYVAAVFPALSDLT
                     GYLQGRAGGWPHLFDKNNATFNNTKEKINTAGYYDVVNFARQLKVPVFYTMGFNDETC
                     PPTSMYAAYNAITAPKELFIAQETGHWTYPEQNEKLTNWLLGKLMGK"
BASE COUNT          547 a          579 c          568 g          589 t
ORIGIN      
        1 acttgatcct gagtaggttt aatagtaata atgggatcga agacacgacg cttcccatct
       61 atgccggtcc aaatgatgga ataggtgcat acatcatctt catttgcttc accatctatt
      121 tctgctgtcc aattctttcc attggcatga ggtggtgcca gaaatacatt tttggcccct
      181 ctcttcattt cgatcttgtc tatggatttc acacctgaat agggatcaat ttcccaaaca
      241 ataaaatcgc cgcgccaggc aatcacctct ttgggaacaa gcgtaaggga tttgtcggcg
      301 ggatttccgg ccattacttt gattttgcga acctgtgaca tagcttacat tttagggtgg
      361 tgaaaaaatt gaaatgtttt atcggaatga acagttcaaa gtctcctgtt taagctggat
      421 agtcctgtat gcgttgacgc ttacaataat tggcaaaacg ttgatcccgg gagatgcccc
      481 cgtctcagaa agataaaaat ttttatgcgg taaggcgaat tttacaagcc ctaataaaaa
      541 aatgaatgtg aaatattcat aaagtgagca caccccgctc tgccgctcgt cgacattggc
      601 aatgtctcag tctttatagc ggattggccc cagtcctgtc cctggtggca gacacgccaa
      661 ggacccgttg tctcttttct tatccgcgaa aatcagcggg atatgcggga actcttcccg
      721 tcacaacatc aaagctatct accatgtgta ggcaatagca tcccatttcc tgtgctgcct
      781 ccggaagacc ggaaattatt tccccattag cttgcccagc agccagttgg tcagtttttc
      841 attttgctcg gggtaggtcc aatggcctgt ttcctgggct atgaataatt ctttgggggc
      901 tgtgatcgcg ttataggccg catacatgga agtgggaggg caggtttcat cattgaagcc
      961 catggtgtag aataccggca ctttcaactg cctggcaaaa ttgaccacat cgtaataacc
     1021 ggcggtgttg atcttctctt tggtgttgtt gaaggtcgcg ttgttcttat cgaacaggtg
     1081 cggccagcct ccggcacgtc cctggagata ccccgtaaga tcggacagcg ccggaaatac
     1141 ggcagctaca tatttcaccc gctggtcaag ggcagcggtt acaatggaca aggccccgcc
     1201 ctggctgcca cccgttacgg ccaggttgct gccatcatac tgcggcaggc tcaccaaaaa
     1261 atcattggcc cgaacgcagc cgacgtacac ccgcttgtaa taataacgat ccctgtcgtc
     1321 gaggttataa ttccagtagc cggcaatggc cccgctcatc aggttattgt ataccgatac
     1381 atccatgttc accggaatgc catggatccc tatttggaaa gtgatgaacc ccttttctgc
     1441 attggcgata tcgccggcat agggccgggc gccggcgccg ggcacgtgta aaatagccgg
     1501 gtatttacct tcttttttgg gcacacagag aatgccgtag agccgggtac ccacgttata
     1561 gttttgaagg ttcacgtggt atacgtttac cgtttctgta caccggtctg gcaacagggt
     1621 catcctggcg tccatgggca ctttggcaag atcggctttg gcattgtccc agaaagtggt
     1681 gaaatcagca ggcatgctgg cagcaggttc aatcttcaga ggatcgaatg ctgcggtacc
     1741 aagtccacgg taggttttgc cgttgacagt ggccagggcc acacagcgca ggaagccggg
     1801 cgttttcata gagccggcat ccaccaccag gcttccattg ggcagcacca gcgaatcttt
     1861 ttgctgcggc tccatttttt cgggaccggt ttcatatttc agtaccgcgt tcttcaccgg
     1921 gttgccgttc tgcaatacgg taatggtaaa cttcaccggt tccccggttt tataggtcca
     1981 gtcggtgtgg tcgggcgcca cgatcacttt gacataaggc gtgcccggct gggccatgct
     2041 gaaatgcatt accaacgaca gcagcaaaac cgccatcaaa cggaaaggcg tgcagaaacg
     2101 gaacatggga ttcatatgca taattattgg caggtaattt actgaaagaa agccgcagcc
     2161 aggcctactt cttgctgaga tggcggcaag cctggcagga cgcttggcac gcaccaaata
     2221 acaacggtcc gccgctgggc aaatgattac attagttcac caaatcctcc ttccacatga
     2281 agc
//
LOCUS       DATIQF010000103         4419 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_47433, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000103 DATIQF010000000
VERSION     DATIQF010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4419)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4419)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4419
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47433"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            508..1089
                     /locus_tag="VLL95_01610"
     CDS             508..1089
                     /locus_tag="VLL95_01610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37582.1"
                     /translation="MKYYFPFCLFLLFSIVARSQLTKGTWIAGGAASFYSTQNKYASN
                     IANQTSDVLRLSINPSIGYFLADKFAIGLRPNYTKNKAQVTSTSGLATNENRFDIGPF
                     ARYYFLQAEKQFNLLADISYQYGVYWFKPTKGNRNTFSASAGTVVFFNSSVGLELLLG
                     YYTQKETINDAVKTINEQKGLQMTIGFQFHLEN"
     gene            1101..1562
                     /locus_tag="VLL95_01615"
     CDS             1101..1562
                     /locus_tag="VLL95_01615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37583.1"
                     /translation="MKQVYLFLIVILISKFSDAQVISPDRSGEYCPGSNITFTVTIAG
                     QSVQSVTPKALNIAPLVVQQPFNISVNGGNITFSFVGSFTDNNNKQTFTVNYTNSIGQ
                     PSTWDATYIKIKSLLTTNVFSHSNSTNTDKYNGTEMSNSKFLNQFSECELW"
     gene            1549..2652
                     /locus_tag="VLL95_01620"
     CDS             1549..2652
                     /locus_tag="VLL95_01620"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HSR37584.1"
                     /translation="MSYGNPWEIPAIGYGSITNYQYLLPAGWSLNGTISTGSWMNGSN
                     NATVTSDLASGVNGFIRIRPINSQCGTGLQPGQEVVIPINRPAPTLTITGTQDYICNT
                     GQTASYTMNGMPAGSTIVWQLSNPSVATIVGCSTCPTVTVQKSANFTGFVNLSATVSH
                     CTFSYPVGPREIALGTGRTTLFFSQLTATCEAPSRAYFYGAVEGFTSATNYDWYAKDM
                     TIASNPFVLKQSGLSATADFPLGSKGNRYYTIRVIATTPCGTVSTIDSEGLLWAPSCS
                     GESLMLSVSPNPATDNLAISLVEPTEAKLEPEKQNIQWVEIQDRNGNIVLKQKQGGNS
                     QRANINVSMLRADYYIVRVWTGTQWLSSKLMKQ"
     gene            complement(2802..2960)
                     /locus_tag="VLL95_01625"
     CDS             complement(2802..2960)
                     /locus_tag="VLL95_01625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37585.1"
                     /translation="MKIGELVLFPAVRNAANDLIIAAPGTSCRHQVKDGTGRKALHPV
                     EVLWDALA"
     gene            3378..>4419
                     /locus_tag="VLL95_01630"
     CDS             3378..>4419
                     /locus_tag="VLL95_01630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37586.1"
                     /translation="MMGCQKQRFEPTNEQPASPPAQDVLTIIDSLQTADFFVKNRPSP
                     DVPVSRQSITSPFNLLNDSDLEYTDETFMQLGSQLVNPYSIPIMTQAYNSWFALSLTS
                     VPATHKYVRFNPTSESQIALLDDSLELDLYTHPLDYEMLSDGDVYVPPGGNIEDMPIL
                     YTVVPANYDLPSGIPYAVLEMLHLPEGEPALMLEELAESIAAGAQYNGSTYNTNSTLV
                     TRLDVTNSNGLHPTFTHQDSPCEISIDLEFIFDCPPPPPPPPPPPPPPPPPSTICGLP
                     GLSCQQGGYPRGRIRVWDTQLNQCVPVNDIQVRAKRWFKIRNQHTNAQGEFSIGTRYI
                     NNTRIRVIFRNGE"
BASE COUNT         1313 a          995 c          920 g         1191 t
ORIGIN      
        1 aactcttaga caactgggaa ttatgtagca aacatcacaa ccgaagaccc gtagaaagtt
       61 gtttccgaag tttcagctac cccaccagct gccagcgccg cattaaaatt ttacactttg
      121 gaatttgaca tatgtcaaaa atccagaaga ttctaccaga caaagtgccc gaacttgtga
      181 aaaatgggtg ttttcacggt aggtactctg aaaatactac tgcacttttg cttgtagggt
      241 atttaattac tagccaaagc aacaaaaatg tgggtgtggc taaaatgggc tactaataat
      301 accaaaagtt caagctgaaa gggactgatt cgtctgttaa aaccgatata gaaaaatgat
      361 actttgtcaa taaatgagca ttaagccaaa atgtgcttgt tgatgccggt taaaccttaa
      421 atggaaacaa ttaccgaatg atttaatcct attgcataat aatcctcaca ataattcttc
      481 atttaacaaa ccatcaatta tttttccatg aaatattact tccctttttg cctatttcta
      541 ctattttcta tagttgccag aagccagtta acgaagggca cttggattgc cggaggtgcg
      601 gcgagttttt attctacaca gaataaatac gctagtaata tagctaatca aacttcggat
      661 gtattgcgtt taagtattaa cccgagtatt gggtatttct tggcagacaa atttgcaatt
      721 ggtctccgtc caaattatac gaagaataag gctcaggtca cttcaactag tgggcttgct
      781 acgaatgaaa accgattcga tataggccca tttgctcgtt attacttttt gcaggcagag
      841 aaacaattca atctacttgc agatataagc tatcaatatg gagtttactg gtttaagcca
      901 acaaagggaa accgaaacac tttttcggct tcagctggta cggttgtttt tttcaattca
      961 tcagtggggc tagaattatt actaggctat tacacgcaaa aagaaacaat taatgatgct
     1021 gttaaaacca taaacgaaca aaagggtttg caaatgacta ttgggtttca atttcattta
     1081 gaaaattaaa aatcagtttt atgaaacagg tttatctttt tctgatagta attttaatat
     1141 cgaagttttc agatgcgcaa gtaatttcac ctgaccgtag tggtgaatat tgtcccggat
     1201 cgaacattac tttcactgta actattgccg gacaaagtgt gcaaagtgta actcctaaag
     1261 ccctgaatat tgcaccatta gttgtacaac aaccttttaa tatttcggtg aatgggggga
     1321 atatcacatt tagctttgta ggaagtttta cggataacaa caataagcaa acgttcactg
     1381 ttaattatac gaattcaatc ggccaacctt ctacttggga tgcaacatac attaaaataa
     1441 aatctctatt gactacaaac gtattttctc actcaaatag caccaacacc gacaagtata
     1501 acggcacaga gatgtcaaat tcaaaatttc tcaatcagtt ttccgaatgt gagttatggt
     1561 aacccttggg aaatcccagc gattggatat ggatcgataa ctaattatca atatttatta
     1621 cccgctggat ggagtttgaa tggaactata tccacaggta gttggatgaa tgggagcaac
     1681 aacgccactg tcacttcaga tcttgcatct ggtgtaaacg gatttatacg aatacgccca
     1741 attaatagtc aatgtggcac cgggctacag ccaggtcagg aagtagttat cccaataaac
     1801 cgaccagcac ctacacttac tattaccgga acgcaagatt acatttgcaa taccggtcaa
     1861 actgcaagtt acactatgaa tggtatgccg gcaggttcaa caattgtttg gcaactttct
     1921 aacccttcgg ttgcaaccat tgtggggtgt agtacctgcc cgacagtaac cgttcagaaa
     1981 agcgcaaatt tcaccggctt tgtaaacctt tccgccacag tgtcgcattg tacatttagc
     2041 tatccggtgg ggccgaggga aatagcattg ggtactggga gaacaacatt attttttagc
     2101 cagctcactg ccacttgcga ggcgccaagc agggcatatt tttatggagc agtggaagga
     2161 tttacctcag ctactaatta cgactggtat gcaaaagata tgactattgc ttcgaacccc
     2221 tttgtattga aacaatcggg tttgtcagcc actgccgatt ttcccttagg aagtaaaggc
     2281 aatcgttatt ataccatacg ggtgattgcc actacaccct gcggaacagt atctaccatt
     2341 gacagcgaag gattgttatg ggccccatct tgctctggtg aaagtttaat gctttccgtt
     2401 tcacccaacc ctgctactga taatttggcg ataagcctgg ttgaaccaac agaagcaaaa
     2461 ttggaaccag aaaagcagaa cattcaatgg gtggaaatac aagaccgaaa cggcaacatt
     2521 gtcctcaagc agaaacaagg aggcaattcc caaagagcga atatcaatgt gtcaatgtta
     2581 cgggcagatt attacattgt aagggtatgg acaggtaccc agtggttgag tagtaaattg
     2641 atgaaacagt aactagcaaa caaacggcgg aagcctaaat ccgccgtttg ttttcatttc
     2701 tcattcattg ccacgtctcc ggaacgggac gttgcgcatt tgcatttgct ggttgttgat
     2761 gacgcaatgt cccctgtggg agacattgct ggaaaggaaa attaggccag cgcatcccac
     2821 aacacttcta ccgggtgcag ggctttgcgg ccggtgccat cttttacctg gtggcggcag
     2881 ctggtgccgg gtgcggcaat gatcaaatca ttggcggcat tgcgtaccgc aggaaacaat
     2941 accagctcgc caattttcat gctcagctcg tagtgttctt ttcattcatt gccacgtctc
     3001 cggaacggga cgttgcgcat ttgaatttgc tgcttggtga tgacgcaatt ttccctgcgg
     3061 gagacattgc tggaaaggag acaaagactg gcagaatgat gaggctgaac aggccttcaa
     3121 cagcagacaa gttgcgccaa cggggtgcct tcacttgcaa taaatggatt cttccggatc
     3181 agtggggacg acggcttttg aatgaattgc ccgataaatg ccatacccac attcatgttg
     3241 acactacttg attatttctt gtcttttcaa cagttattat ttaaattgat gttttaacaa
     3301 taagtgatat gaagcttaga aaatgtcagc cacttcgcat ttggtttagc atatatgccg
     3361 cgatggcaat tattattttg atgggctgcc aaaagcagcg ctttgaacca acaaacgaac
     3421 agcctgcctc accaccagca caggatgtgc taaccattat tgacagttta caaacggccg
     3481 acttttttgt taaaaaccgc cccagccccg acgtgccggt atccaggcaa tccattacca
     3541 gccccttcaa tctactcaac gatagcgacc tagaatacac cgatgagact tttatgcaat
     3601 tgggttcgca actggtaaat ccttatagca tacccattat gacacaggca tacaattcgt
     3661 ggtttgcgct atcgcttacc agcgtgcctg ctacccataa atatgtacga tttaacccca
     3721 cctccgaatc gcaaatagcc ctgctcgacg atagtctgga acttgacctc tacacccacc
     3781 cacttgacta cgaaatgctg agcgatggcg atgtgtatgt accaccgggg ggcaacatag
     3841 aagatatgcc catactgtac acagtagtgc ccgccaatta tgacttacct tctggcatac
     3901 cctatgcagt gctggaaatg ctgcacctgc ccgaaggaga accagccctt atgttggaag
     3961 aactggcaga aagcatagcc gcaggggcac aatacaatgg cagtacctac aatacaaact
     4021 ctaccctggt tacacgctta gatgtaacca atagcaacgg attacacccc acatttacgc
     4081 atcaggattc gccatgtgaa atttcgattg atctggaatt catcttcgat tgcccaccac
     4141 cacctccgcc gccaccgcca ccaccacctc ctccaccgcc accttctacc atttgtggtt
     4201 tacccggcct tagctgccag cagggtggct atccaagggg gcgcatacgg gtgtgggata
     4261 cacagcttaa ccaatgcgta cctgtaaatg atattcaggt aagggccaaa cgctggttta
     4321 aaatacgcaa ccaacacacc aatgcgcaag gcgagttcag tataggcacc cgctacatta
     4381 acaacacccg gatcagagtt attttcagaa acggcgaat
//
LOCUS       DATIQF010000104         1695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_1706, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000104 DATIQF010000000
VERSION     DATIQF010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1706"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..362)
                     /locus_tag="VLL95_01635"
     CDS             complement(<1..362)
                     /locus_tag="VLL95_01635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37587.1"
                     /translation="MKKNLLCIALALFAFSMIHAQDSATRANPDEAYLKKKKTAKGLI
                     IGGGISLGASVALGVVAMAQVTEEVFVSPWTDQNFNENAGEGAAIASTVLFIGGAAML
                     TAGLIINGNANRMNRGGAV"
     gene            552..>1695
                     /gene="htpG"
                     /locus_tag="VLL95_01640"
     CDS             552..>1695
                     /gene="htpG"
                     /locus_tag="VLL95_01640"
                     /inference="COORDINATES: protein motif:HMM:NF003555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HSR37588.1"
                     /translation="MATGNIRVSSENIFPIIKKFLYSDHEIFIRELVSNAVDATRKLK
                     TLASVGEFTGDLGEPKIEVVLDAKKKTISIIDQGIGMTAEEVDKYLNQVAFSSAEEFL
                     AKYKGQNEASIIGHFGLGFYSSFMVASQVEVFTKSWKTDAQAVRWECDGSPEYQLEET
                     TERTERGTEIRLHIDKDSEEFLDEFRLKGMLEKFCKFLPVPIYFRDANAKEEKPKEGE
                     EPAVPQPINNTNPAWIRKPSELTKEDYEAFYKELYGPFSETPLFWIHLNVDYPFNLTG
                     ILYFPKIKQSYEIQKDKIQLYSNQVFVTDEVKDIVPEFLMLLHGVIDSPDIPLNVSRS
                     YLQGDPNVKKINAHITKKVADKLDEIFRNDRADFEAKWESLGLFVKY"
BASE COUNT          479 a          422 c          416 g          378 t
ORIGIN      
        1 acagcccctc ctctgttcat gcggttggca tttccattga tgataagccc ggcggtcagc
       61 atggcggccc cgcctatgaa taagacggtg ctggctatag cggccccttc tcctgcattt
      121 tcattgaagt tctggtctgt ccatggcgac acaaagacct cctcggtcac ctgcgccatg
      181 gccaccactc ccaatgccac actggccccc aggctaatgc ctcccccaat gataaggcct
      241 ttggctgttt tcttcttttt gagataggct tcgtccgggt tggcacgggt ggctgaatcc
      301 tgggcatgaa tcatggaaaa tgcaaagagt gcaagggcaa tacaaagcag gttctttttc
      361 atgcaaatcc tttgtggaaa gttactccag tactccggca aattcaaaac aaactggcaa
      421 gggacctgtc aaaaaaaaac gggtccgtcc ccacacccga aattttgtca gttggacatg
      481 gcacggcatt gcttttgatg cagaatcggt gcttctacta ttcatttttc ttaaacaaac
      541 aaccaagtaa tatggctacc ggaaacatca gagtgagttc ggaaaacatt ttcccgatca
      601 tcaagaaatt cctgtacagt gaccacgaga tctttatccg cgaactggtg agcaacgcgg
      661 tagatgctac ccgtaagtta aaaacactgg ccagtgtagg cgaattcacc ggcgacctgg
      721 gcgagcctaa aatcgaagta gtgctcgacg ccaaaaagaa aaccatcagc attattgacc
      781 agggcattgg tatgaccgcc gaagaagtgg acaagtacct gaaccaggtg gcattcagca
      841 gtgccgagga gtttttggcc aaatacaaag gccagaacga agccagcatc attggccatt
      901 tcggattggg tttttacagc tcattcatgg tggccagcca ggtggaagta tttacaaaaa
      961 gctggaagac tgatgcacag gctgttcgct gggagtgcga tggcagcccg gaataccaac
     1021 tggaagaaac cacagaacgc acggagcggg gtaccgaaat tcgcttgcat atcgataagg
     1081 acagcgaaga attcctggat gaatttcgcc tgaagggcat gctggaaaaa ttctgcaagt
     1141 tcctgccggt gcccatctac ttccgcgatg cgaatgccaa agaagaaaaa ccaaaagaag
     1201 gggaagagcc cgctgttccc cagcccatca acaataccaa ccccgcctgg atccgcaaac
     1261 ccagcgaact gacaaaggag gattacgaag cattctataa agagctatac ggccccttca
     1321 gcgaaacgcc gcttttctgg attcatttga atgttgatta tcccttcaac cttaccggca
     1381 tcctgtactt cccgaaaatc aagcagagct acgaaataca aaaggacaag atccagttgt
     1441 acagcaacca ggtgtttgta accgatgaag tgaaggacat tgttcctgaa tttttgatgc
     1501 tgctgcatgg tgtgatcgac agccctgata ttccgctgaa tgtgagtcgc agctacctgc
     1561 agggcgatcc caacgtaaag aagatcaatg cgcacataac caaaaaagtg gcggacaagc
     1621 tggatgagat cttccgcaac gacagggctg atttcgaagc caagtgggaa agcctgggat
     1681 tgtttgtaaa gtacg
//
LOCUS       DATIQF010000105         3581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_214627,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000105 DATIQF010000000
VERSION     DATIQF010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3581
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214627"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            220..591
                     /locus_tag="VLL95_01645"
     CDS             220..591
                     /locus_tag="VLL95_01645"
                     /inference="COORDINATES: protein motif:HMM:NF015898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HSR37589.1"
                     /translation="MQKTTAKSLTKAEEQVMHALWQIGEGFLKDIVEAMPAPQPHSNT
                     VATLLKILMEKGFVTSQAVGRNNLYKPLLSKAGYSKQSLGQLVSSYFDGSYSSAVSFL
                     VDQKKLSVQDLELLLKELKNK"
     gene            595..1620
                     /locus_tag="VLL95_01650"
     CDS             595..1620
                     /locus_tag="VLL95_01650"
                     /inference="COORDINATES: protein motif:HMM:NF017390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M56 family metallopeptidase"
                     /protein_id="HSR37590.1"
                     /translation="MQPVLVYLLKMLLCSAVLLGYYWVALRNERFHKWNRFYLLSAFV
                     LSVVIPFFNIPLLKPEEPTAVITFVGALPWNQNMLLKPTAFAWGWKETGMMVAALVSL
                     LLLLHLLVSVVRIVRMYKRNTPTYFNEVSVVITEERSAPFSFFRWLFWRSDIDPDTEN
                     GQRMLQHELTHISERHSADKLFVELLLIVCWVNPFFWLMRRELYAIHEFLADQKAIAR
                     HDGAAFAAMILQATQTTPYALTNPFFSSHLKRRLQMITNSKSPKYSYLRRISGLVLMV
                     AVGALLVVSIDHATAQKTPSKASKTKAPEPPFHPMRPMANGRNFPTASSRQRCFTGKA
                     FATSGTT"
     gene            1617..2450
                     /locus_tag="VLL95_01655"
     CDS             1617..2450
                     /locus_tag="VLL95_01655"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSR37591.1"
                     /translation="MKDGRKLVYELNEAKKKGYFIPPPPPPPPAPAAPDQPDAPAPPQ
                     NGKQGSMITTTGTDGKSPLYIYAGQEISEAQMQQVDPNQIERIDVLKGDAALKVYGEK
                     GRNGVVKITPKNADYSQRTSGSQVNSIATTGQPPLYYFDGIRISEEHMKMIDPSTIAT
                     VHVWKGDKAIDKFGTDAQYGVVEIISKANAEVATFVSPPSSSQSLKAKATMSSLLQSA
                     SSATARPLILLNDKEITAEEMKNLDPKSIMEIKVIKGADAFKQYGAKGMNGVIIIKEG
                     C"
     gene            complement(2503..>3581)
                     /locus_tag="VLL95_01660"
     CDS             complement(2503..>3581)
                     /locus_tag="VLL95_01660"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004185 - serine-type carboxypeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HSR37592.1"
                     /translation="WTCYAGMKYLGDSLVSGYLQPQDESTVLLKSNGDPTFLHPDYAG
                     HPLADALKKYKTVQWQNATMQTTEYGNGWSWNDYDATYMTPRSSLPLFGNVATYAVKN
                     GALVSEPAAALGLVGNADNFKDTALRIFRKFDDPYFTVMDQGRAKRVTTTLFLTPQSA
                     SQLAAVHLGNDWYFDLKAAAAGTWKAVYSQPTDSMLKPLMHRSDNFFAEQTLLMISNQ
                     WFGVMNENKVIDSFLKADLKALPDKPRWADGSGLSRYNLFTPADYIWLLRQMQQEFPM
                     ERLKEILPTGNDGTLTNYYKSLEGKLFAKTGTLAGVVALSGYMYAKSGKLLLFSTIVN
                     NHNGAAPAVRRAVEKYLLTVWEKN"
BASE COUNT          922 a          929 c          896 g          834 t
ORIGIN      
        1 cctctgtggt tcaacaattc tttaacaact aaaaaattag ttgtttcact aaaaagttag
       61 ttatattcga ttcggaattc cttccgggtg gttgcaaaca tctggacaca agtacgaagt
      121 acgaaaaacg aagtacgaag ggaaatggcc ggggatggga caagagctcg ttgcatcctt
      181 tgtagttttc cttcttgctt cctaagaaaa aaagtaacaa tgcaaaagac aaccgctaaa
      241 tcactcacca aagccgaaga acaggtaatg catgccctgt ggcaaattgg cgaaggcttt
      301 ctgaaagaca ttgtggaagc catgccggcg ccgcagccgc acagcaacac cgtggctacc
      361 ttgctgaaaa tcctgatgga aaaggggttt gtgacttcgc aggccgttgg acgcaacaac
      421 ctgtacaaac cactgctcag caaagccggc tacagcaagc agagcctggg gcagttggtc
      481 agcagctatt tcgatgggtc gtacagcagc gccgtcagct ttctcgttga tcagaaaaag
      541 ctgagtgtgc aggacctgga actgttattg aaagaactga aaaacaaata gcctatgcaa
      601 ccggtattgg tatacctcct gaaaatgctg ctgtgcagcg ccgtgctgct gggctactac
      661 tgggtggcgc ttcgcaatga aaggtttcat aagtggaacc ggttttacct gctcagtgct
      721 tttgtattga gtgtggtcat tcccttcttc aacatcccgt tgctgaagcc ggaagaacct
      781 acagccgtca tcacttttgt aggcgccttg ccctggaacc aaaatatgct gttgaagcca
      841 actgcctttg catggggctg gaaagaaaca ggcatgatgg tggccgcatt ggtttcgttg
      901 ttgttgctcc tgcacctgct ggtatcagtg gtgcgcattg tacggatgta caaacgcaac
      961 acgcccacct atttcaacga agtgagtgtg gtgatcacag aagaacgcag tgcgcctttt
     1021 tcattcttcc gctggttgtt ttggcgcagc gatatcgacc ccgatactga aaatggacaa
     1081 cgcatgctgc agcacgaact cacccacatc agcgagaggc acagtgccga caagctcttt
     1141 gtggaactgc tgctcatcgt atgctgggtg aatcctttct tctggctcat gcggcgcgaa
     1201 ctctatgcca ttcatgagtt ccttgccgat cagaaagcca ttgcccgcca tgatggcgcc
     1261 gcttttgccg ccatgatact gcaggccaca caaaccacac cgtatgcact taccaatccc
     1321 tttttctcct cacatcttaa acgtcgttta caaatgataa cgaattcaaa atctcctaaa
     1381 tacagctacc tgcgccgcat cagcggattg gtattgatgg tagccgttgg cgccttgttg
     1441 gtggtcagca ttgaccatgc gactgctcag aaaacgccat cgaaagccag caaaacaaag
     1501 gctccggaac cgccatttca ccctatgcgc ccgatggcca atggaaggaa cttcccgaca
     1561 gcatcaagtc ggcagaggtg ctttaccgga aaggcgtttg ctacatccgg tacaacatga
     1621 aagatggccg caaactggtg tatgaactga acgaagcgaa gaagaagggc tacttcatac
     1681 cgccgccacc accaccccca cctgcacctg ccgctcccga ccagcctgat gcgcctgccc
     1741 ctcctcaaaa tggaaagcag gggtcgatga taaccactac agggacggat ggaaaatcac
     1801 cgctgtacat ttatgccggg caagaaatat ccgaagcgca aatgcaacag gtagatccca
     1861 accagattga acgcattgat gtattgaaag gagatgcggc gttgaaagtg tatggagaaa
     1921 agggccggaa cggggtggta aagatcacac caaaaaatgc agactattct caaagaactt
     1981 ccggcagcca ggtcaactca attgcaacca caggccaacc tccgctctat tattttgatg
     2041 gcattcgcat cagcgaagag cacatgaaaa tgatagatcc atccaccatc gctactgtac
     2101 atgtgtggaa gggcgacaag gccattgaca aatttggcac ggatgcccag tatggcgtgg
     2161 tggagatcat ttcaaaagcc aacgctgagg tagccacttt cgtatcacca ccctcttcca
     2221 gccaatcgtt gaaggcgaaa gccaccatga gttccctgct gcaatctgcc agcagcgcca
     2281 ccgcacgtcc gctcattttg ctgaatgaca aggaaatcac ggcagaggaa atgaaaaacc
     2341 ttgatcccaa atccatcatg gagataaaag tgatcaaagg ggccgatgca tttaagcaat
     2401 acggcgccaa aggaatgaat ggtgtcatca ttattaaaga aggctgctga tcagcaagtc
     2461 agttccttca gcgtgctgat ggcttcctcc ctggggaagc cattagtttt tctcccaaac
     2521 cgtaagcagg tatttttcaa cggccctgcg cactgcaggg gctgccccat tgtgattgtt
     2581 cacgatggta ctgaagagca gcagcttgcc gcttttggca tacatatacc cactgagcgc
     2641 caccacgccg gccagcgtgc cggttttggc aaacagtttt ccttccagcg atttgtaata
     2701 attggtgagc gttccgtcat tgccggtggg cagtatctct ttcaatcgct ccatgggaaa
     2761 ctcctgttgc atttggcgaa gcaaccaaat gtaatcggca ggcgtaaaga gattgtaacg
     2821 gctgagcccg ctgccatctg cccaacgggg tttgtcgggc aatgctttca ggtcggcttt
     2881 cagaaaggag tcgatcactt tgttttcatt catcacacca aaccattggt tgctgatcat
     2941 cagcagggtt tgctcagcaa aaaaattatc gctgcggtgc atcagcggct tcagcatgct
     3001 gtcggtgggt tgcgagtata ccgccttcca ggtgccggca gccgcggcct tcaggtcaaa
     3061 gtaccagtcg ttgcccaaat gaacggcagc cagttgcgaa gccgactgcg gtgtcaggaa
     3121 cagtgtagtg gtgacccgtt tggctctccc ctggtccatc acggtgaaat agggatcatc
     3181 gaactttcgg aaaattcgaa gagcggtatc cttgaaattg tcggcattgc ccaccagccc
     3241 caatgccgct gcaggttctg ataccagggc gccgtttttc acggcatagg ttgccacatt
     3301 tccaaacagc ggcaggctgc tgcggggcgt catataggta gcatcgtaat cattccagct
     3361 ccagccattg ccgtactcgg tggtttgcat cgtcgcattt tgccattgca ccgttttgta
     3421 tttcttcaag gcatcagcca atggatgccc ggcataatcc gggtgcagga aagtggggtc
     3481 accgtttgat ttcaacagca cagtagattc atcctgtggc tgcaggtacc cggacaccag
     3541 gctgtcgccc aggtatttca taccggcata acaagtccag a
//
LOCUS       DATIQF010000106         1936 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_47512, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000106 DATIQF010000000
VERSION     DATIQF010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1936
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47512"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1069)
                     /locus_tag="VLL95_01665"
     CDS             complement(<1..1069)
                     /locus_tag="VLL95_01665"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HSR37593.1"
                     /translation="MYVLKFGGSSVANSHNIKLVSDIFLNHAAARKIVVVSALGGITD
                     QLIACGQLAEKGDEKYADILQAVEKRHLETVKELLPVNNQSACLSMVKQLCNELEAIC
                     EGVFRLQELSARSKDRIVSFGELLSSKILSGYLTAINVSHTWLDSRALIKTNSNYGNA
                     AVSFTTTNQNIQEAVNAAGSPLFVAPGFISSNGDGLTTTLGRGGSDYTAAIYAAAVKA
                     AVLEIWTDVSGMMTADPRWVSNARPLPVISYQEAMELSHFGAKVIYPPTLQPAMLLKI
                     PVWIKNTFAPNDHGTVIQHETTKEDGFIRGISSISQISLLSLEGSGMIGIPGFSKRLF
                     EALANEKINVILITQGSSEHSI"
     gene            complement(1461..>1936)
                     /locus_tag="VLL95_01670"
     CDS             complement(1461..>1936)
                     /locus_tag="VLL95_01670"
                     /inference="COORDINATES: protein motif:HMM:NF019268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HSR37594.1"
                     /translation="NGKLKLFLNYIGGKSNDSAKMNQYDAVVTMAVSDKFSMGYNGTI
                     ARFKNKTDGKWSESNNWWGSALYFNFDASEVFGLTLRSELFEDNKQITVFGGVPGIAG
                     GHVFANTLSANIRLGGLTLIPEVRFENASQNIFYDKAGNGTKTAANVLMAAVYAF"
BASE COUNT          493 a          429 c          495 g          519 t
ORIGIN      
        1 aaatggaatg ttctgatgat ccttgcgtga tcaggatgac attgatcttt tcattggcca
       61 aagcttcaaa caaccgttta gagaaaccgg gtatgcctat catgccgctg ccttcgaggc
      121 tcagcaggct gatctggctg atgctcgata tgcccctgat gaatccatct tcttttgtgg
      181 tctcgtgctg gatgactgtg ccatgatcgt tgggggcaaa cgtgttcttg atccacactg
      241 gtattttcaa tagcatggca ggttgcaggg taggagggta aatcaccttg gcgccaaagt
      301 gcgaaagttc cattgcttcc tggtaagata taaccggaag gggacgggca ttgcttaccc
      361 agcgggggtc tgcagtcatc atgccgctca catcggtcca tatttccaaa acggctgctt
      421 ttacagcagc ggcataaata gcagcggtat agtcggatcc tccccggccc agggtagtgg
      481 taaggccatc gccattggag gaaatgaagc cgggggctac aaagagggga ctgcccgcag
      541 cgttaacggc ttcttgaata ttttggttgg tagtagtaaa tgatacggcc gcgttgccat
      601 agttgctgtt ggttttgatc aaggctcgtg aatcaagcca ggtatgcgaa acattgatgg
      661 cggtaagata gccggacagg attttggaag atagcagttc gccaaaactc acgatccggt
      721 ccttgctgcg ggccgataac tcctgcaacc ggaacactcc ttcgcaaatg gcttcgagtt
      781 cattgcacaa ctgctttacc atcgacaggc aggcgctctg attgttcacc ggcagtaatt
      841 cttttactgt ttcgagatga cgtttttcaa cggcctggag aatgtcagca tatttttcat
      901 cgcctttttc ggccaattgt ccgcaggcaa tgagttggtc agtaatgccg ccgagagcag
      961 atacgaccac tatttttcgg gccgcagcat gattcaggaa aatgtcactt accagtttga
     1021 tgttatggct gttggctact gatgaaccgc caaactttag aacgtacata tgtgaaggtt
     1081 gtaataaggg aaaacgaaaa caaagtagat tgatggcagg atgttacccg tggggatcag
     1141 cccgaaggcc cgaagtttaa tatcatgaaa acacaaccct cagcgggttg taatggtggt
     1201 aataatggtg gtgccggtaa atggcatgcc acccaacagg tcagcaccac caccatggta
     1261 tatggagtgg ctcattgaat gatatggatg acctgttttc attttgctcg gcaaatatag
     1321 ggggggaact atttgttttg acaatttgcc gtaaaaatta aatttcagta gaggacgtat
     1381 tgatttgttt aaagatcatt agaaaataaa aaagcaatcc gggaaaggat tgctttttct
     1441 tacaggggct atggagaggg tcagaaggcg tacacagcag ccatcaacac gttggcagcg
     1501 gttttggtac cattgccggc tttgtcgtaa aagatgttct ggctggcgtt ttcaaacctg
     1561 acctctggta tcagcgtcag gccacccagc cggatattgg ccgataacgt attggcgaat
     1621 acgtggccac cagcaatacc cggtacacca ccaaacaccg tgatctgctt gttgtcttca
     1681 aacaattcgc tgcggagcgt aagtccaaaa acttcactgg cgtcgaaatt gaaatacagg
     1741 gccgatcccc accagttgtt cgattcactc catttgccat ctgttttgtt tttgaagcgg
     1801 gcaatggtac cgttgtatcc catggagaat ttatctgaaa ccgccatggt aacaacggca
     1861 tcatactggt tcattttggc ggagtcattc gatttgccac ctatgtaatt caggaataat
     1921 ttcaacttgc catttt
//
LOCUS       DATIQF010000107         1560 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_17043, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000107 DATIQF010000000
VERSION     DATIQF010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17043"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..986)
                     /locus_tag="VLL95_01675"
     CDS             complement(<1..986)
                     /locus_tag="VLL95_01675"
                     /inference="COORDINATES: protein motif:HMM:NF017046.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P N-terminal domain-containing
                     protein"
                     /protein_id="HSR37595.1"
                     /translation="MLKLITSLLLMAMCCAVQAQLPLPADYLSADFHKGRREALRQLM
                     PANSVTVIFAYPERVFSRDVTYSYHPNPDLFYFSGYKEPNAVLLIFKETQEGTHGAYN
                     ELFFVRKRNPLQERWSGRRLGTEGVKQTLGFTHVYNDEEFAAFPIDFGKFGKVLYDAF
                     PDDAGPGMLNTLLNAFQSKAGITHRMSKNLIEDLNILMQNTYPSNIPARVNRFKTRMA
                     ELDDEEYRSNPILNELVRNPDAATLEKLIARIKANPFQSYEYNQLVSSLREIKTPEEL
                     VLLRKSSFYSAMAHVEVMKAIHPDMSETELMGTFEYIHKKYGAEGEGYPPIVG"
     gene            1351..>1560
                     /locus_tag="VLL95_01680"
     CDS             1351..>1560
                     /locus_tag="VLL95_01680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37596.1"
                     /translation="MKKATLRRIAICLLLAQMTGFAIAQQTKPWSVRRAYINFSAALN
                     DGSTAQLNLHFNNRWVGFIGHDVGHP"
BASE COUNT          380 a          369 c          405 g          406 t
ORIGIN      
        1 cctacaatgg gcggatagcc ttcgccttcg gcaccgtatt tcttatggat gtattcaaat
       61 gtgcccatca gttcagtttc cgacatatcg gggtgaatcg ctttcatcac ctctacgtgg
      121 gccatggcag aataaaaaga agacttccgg agcaatacca gctcttccgg cgtttttatt
      181 tcccgcaaag aacttaccag ctggttgtac tcatacgatt gaaaaggatt ggctttgatc
      241 cgggcaatca atttttccag ggttgcagcg tccgggttgc gcaccagttc gttcagaatg
      301 ggattcgacc ggtattcttc atcatccagt tcggccattc gtgttttgaa gcgattgact
      361 ctcgcaggaa tattggaagg ataagtgttt tgcatcagga tgttcaggtc ttcgatcagg
      421 tttttgctca tgcggtgtgt gatgcctgct ttcgattgga aggcattcaa cagcgtattc
      481 aacataccgg ggcctgcgtc atcaggaaag gcatcgtaca gcaccttccc gaatttgcca
      541 aaatcaatgg ggaaggcagc aaattcttca tcgttgtaca catgggtgaa gcccaatgtt
      601 tgttttaccc cttctgtgcc gaggcgcctt cctgaccagc gctcctgtaa gggattgcgc
      661 ttgcgcacaa aaaacagttc gttgtatgcc ccatgggtgc cctcctgcgt ttctttgaaa
      721 atgagcagta ctgcattggg ttctttataa cccgagaaat agaagaggtc ggggttggga
      781 tggtaactgt acgttacatc gcgggaaaac accctttcgg ggtacgcaaa gatgacggtg
      841 accgaattgg ccggcatcag ttggcgcagg gcttcgcggc ggcctttatg aaaatcggcg
      901 ctgaggtaat cggcgggcaa tggcagttgc gcctgcacag cacagcacat tgccatcagc
      961 agcaggcttg taataagttt tagcatgagt aggaaaatgt ggttggatag aatgggctat
     1021 tgcggctaaa tatacagaag ttgagcggct gtgcggggtg ggtgatccgg agcccgtggg
     1081 taaagatttg gattagccaa caactaaaga ttgcaaatgc cgaaccgcgg cgaacctgaa
     1141 ggccagcgct ttctttcgca ttcggagtca ttcaccgcag atgcatttgc gcaattccgt
     1201 aattcctgcc attgtgcccc cggtcattac ttgccaattg gcaaatactg ccagcggcca
     1261 ggcgaacccg gcgaaattca attattgacc gccagggcgg aaggatagtt tcacactgca
     1321 attaaaaccg aaccctcaaa aagacatttt atgaaaaaag ctacccttcg ccgaatcgct
     1381 atatgccttt tgcttgcaca aatgacaggc tttgctattg cccagcaaac aaaaccctgg
     1441 agtgttcgca gggcttacat caatttcagc gccgcactca atgatggcag tactgcacag
     1501 ttgaacctgc actttaataa ccggtgggtt gggtttattg gtcatgatgt gggtcatcca
//
LOCUS       DATIQF010000108         2423 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_153920,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000108 DATIQF010000000
VERSION     DATIQF010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2423
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153920"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2184
                     /gene="ppk1"
                     /locus_tag="VLL95_01685"
     CDS             <1..2184
                     /gene="ppk1"
                     /locus_tag="VLL95_01685"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: protein motif:HMM:NF003917.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009358 - polyphosphate kinase complex
                     [Evidence IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006799 - polyphosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HSR37597.1"
                     /translation="SCIISGTFGQIVLTLLGMSLKKNIIPRDISWLSFNARVLQEAND
                     PTVPLKERIRFLGIHSNNQDEFFRVRVATLKRMTQLMKKGVKAAMHLEKSAEYILEEI
                     QKIVLQQQHEFARIWDNIQKELAKEKIFLLNDQKLNKEQQAFVEKFYDEVVSPNLIPL
                     MIEDIPQMPYLRDKSIYLGVVMRKKDSAYNQKYSLIEIPAKAIGRLVILPAKAGEKNI
                     MLLEDVIRFNLKHIFSFFDYDTFSAHIFKVTKDAEIDIDNDISTDIAQRISKGIKKRR
                     EGKPTRFVYDKEMDAGLLEYLMRRLNLTRKDNIIPGGRIHNFRHFMDFPNVFPRQSER
                     KPSFIHPALDDGKRISDVLRQHDVLLSFPYHSFTSLIHMLREAAMDPEVASIRITAYR
                     LASNSKIINALINAVRNGKKVTVVLELRARFDEEANLEWKEVLEQEGVKVITGFPNMK
                     VHAKLCLIKKVSGKKVYQYGFVSTGNLNEKTATIYGDHCLLTSDRRIMADMNRIFNFL
                     EKPAPTMAPLRKCKTLLVCPTGMRKSLEALINNEIANAKAGKEAAITIKVNSLSDELL
                     INQLYRAAGEGVNIKMIVRGIYCAVFENMNSKKFEKPYCISIVDEYLEHARVLAFHNN
                     GAPRVYLSSADFMVRNLDHRIEAAVPVTDPVIQQELFDILDIQLQDNVKARVLTKKLQ
                     NEYVKSKGKKIKSQVEIYKYLATKKIASPAHPRFDDKHKIKLSSK"
     gene            2242..>2423
                     /locus_tag="VLL95_01690"
     CDS             2242..>2423
                     /locus_tag="VLL95_01690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37598.1"
                     /translation="MRLAAIDIGSNAARLLICDVLHNAKGEPVFNKINLVRVPLRLGI
                     DVFADGEISKQRIGMV"
BASE COUNT          725 a          612 c          548 g          538 t
ORIGIN      
        1 tcctgcatta tcagcggtac ctttggtcaa attgtactta ccctacttgg tatgagcctt
       61 aagaaaaata tcattccccg cgacatcagc tggctgagct ttaatgcaag agtgctgcag
      121 gaagccaacg atcccactgt accgctcaaa gaacgcattc gcttcctggg catccacagc
      181 aacaaccagg atgaattttt cagggtgcgg gtagccaccc tgaaaaggat gacccagctg
      241 atgaaaaaag gggtgaaagc cgcgatgcac ctcgaaaaat ctgcggagta catactggag
      301 gaaatccaga aaattgtatt gcagcaacaa catgaattcg cccgtatctg ggacaatatc
      361 caaaaagaac tggcgaagga aaagatcttc ctgctgaacg atcagaaact caacaaggag
      421 caacaagcct ttgtcgaaaa attttatgat gaagtggtaa gtcccaacct cattccactg
      481 atgattgagg acattccgca aatgccctac ctacgtgaca aatccattta cctgggtgtg
      541 gtaatgcgca agaaagattc agcctacaac cagaagtatt cattgatcga gatccccgcc
      601 aaagcaattg gccgattagt gatcctgccc gctaaggccg gcgagaaaaa catcatgctg
      661 ctggaagatg tgatccgctt caacctgaaa cacatattct ccttcttcga ctatgatacc
      721 ttttcggcac atattttcaa agtgacgaaa gacgcggaaa tcgatatcga caacgacatc
      781 agcaccgaca ttgcgcaacg catttcaaaa ggcatcaaga aacgccgcga agggaaaccc
      841 acccgctttg tgtacgataa agaaatggat gcaggcctgc tggaatacct gatgcgccga
      901 ttgaacctca ccaggaaaga caacatcatt cccgggggac gcattcacaa cttccggcac
      961 ttcatggact tccccaatgt gttccccagg caaagcgaac gaaaaccttc atttattcat
     1021 cctgccctgg atgatggcaa acgcatttcc gatgtgctca ggcaacacga tgtgctcctc
     1081 tcctttccct atcattcctt cacttccctc atccacatgc tgcgggaagc agccatggat
     1141 ccggaggtgg ccagcatcag gatcacagct taccgcctcg ccagcaattc caagatcatc
     1201 aatgccctca taaacgccgt acgcaatgga aaaaaggtga cggtagtttt ggaactacga
     1261 gcaagattcg atgaagaagc caacctggaa tggaaggaag tattggaaca ggaaggtgta
     1321 aaagtgatca ccggttttcc caacatgaag gtgcacgcca aactctgcct catcaaaaag
     1381 gtaagtggca aaaaagtgta ccagtatggt tttgtaagta ccggcaacct gaacgaaaaa
     1441 acagccacca tttacggcga ccactgcctg ctcaccagcg acaggcgcat catggccgac
     1501 atgaaccgca tcttcaattt cctggaaaag ccggccccca ccatggcgcc actgcgcaag
     1561 tgtaagacct tgctggtttg cccaactggc atgcgcaaat cgctggaagc gctaatcaac
     1621 aatgaaatag cgaatgccaa ggctggcaag gaagccgcca ttaccatcaa agtcaattca
     1681 ctgagtgatg aactactcat caaccaattg taccgggctg ctggtgaagg cgttaatata
     1741 aaaatgattg taagagggat ctattgtgcc gtgtttgaaa acatgaactc caagaagttt
     1801 gaaaaaccct attgcatcag tattgttgat gagtatctgg aacacgcaag ggtgctggca
     1861 tttcataata atggggctcc cagggtctat ctttcttcgg cagatttcat ggtcaggaat
     1921 ctcgatcatc gcattgaagc ggctgttccg gttacagatc ctgtcatcca gcaggaactg
     1981 ttcgacatac tcgacatcca actgcaagac aacgtgaagg caagagtcct caccaaaaaa
     2041 ctgcagaatg aatacgtcaa atcgaagggc aaaaagatca agtcacaggt ggagatctac
     2101 aaatacctgg cgaccaaaaa aatcgcctcc cctgcccacc cccgcttcga cgacaagcat
     2161 aaaataaagc tctcatcaaa gtaaaccgct tgtgttgaca atgggtggcc tgcatttcgg
     2221 taaaatgcat tttatttgac catgcgtctt gcggcaattg atataggaag taacgcggcc
     2281 cgcctgctca tttgtgatgt gctgcacaac gcaaagggtg aacctgtttt caacaagatc
     2341 aacctggttc gtgtacctct ccggcttggt attgatgtat ttgccgacgg cgagatcagc
     2401 aaacaacgta tcggcatggt gtt
//
LOCUS       DATIQF010000109         2511 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_275496,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000109 DATIQF010000000
VERSION     DATIQF010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275496"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..421
                     /locus_tag="VLL95_01695"
     CDS             <1..421
                     /locus_tag="VLL95_01695"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HSR37599.1"
                     /translation="DYRNEKTRILVATDILSRGIDIDIIDLVINYDVPHDGEDYVHRV
                     GHTARAERNGTALTIINPRDQRKFAHIERLLEKEVPKLPLPPELGPGPDWKPFERREG
                     GGGHKGGQKPYRGGKGKGGGPHRGKPRPQGGGKPPAS"
     gene            345..1628
                     /locus_tag="VLL95_01700"
     CDS             345..1628
                     /locus_tag="VLL95_01700"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HSR37600.1"
                     /translation="MAKERVEDHTAESRDHKVEGSRLLPEIKDNFLKVSHCVTHRKMQ
                     KHYLLAGLIMLLGAFSVKGQTPVFISGQEGYRSFRIPAIISWQADTLLAFCEGRVNGA
                     ADFGDVDIVMKRSTDGGQTWSALQNVVDNGALQAGNPAPVVDLTDPAYPRGRVFLFYN
                     SGNRNEQEVRKGNGLREVWYITSTDAGQSWSQPVNITTQVHKPNQPGVNAEYRFSEDW
                     RSYANTPGHAIQLKQGQYRGRLYVAANHSAGPPLPKFEDYRAHGYYSDDHGKSFQLST
                     NVELPGSNEAMAAELHDGRLVMNIRNQQGGVRRRIVAISSNGGNTWDSAWFHPQLIDP
                     VCQGSLLTIGRKGKHSILAFCNPASAGRRDSLTLRISYNSGATWDKQILLDANPSVDD
                     YTAYSDLVLLSNGSLGVLYERNNYGEIVFRKVIWK"
     gene            complement(1689..>2511)
                     /locus_tag="VLL95_01705"
     CDS             complement(1689..>2511)
                     /locus_tag="VLL95_01705"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HSR37601.1"
                     /translation="NRLVFGSGDGRIYCLDVKKGNELWRFTTKAAVLGSPLINGEKVF
                     IGGSDHSFRCIDLKTGKQLWSFDSLKGPVVSTPVVSNGQVIFGAWDTYLYALDAVTGQ
                     LKWKWSNGTSVRNFSPAACVPTVHDSVVYVVAPDRYITAIDAVTGKTLWRSNEATVRE
                     SMGMSGDGRFVYGKTMQDTVVAFATGKARQSAALKMHVGYGYEHAPSMLIENEGIVFF
                     GTRNGVVYAIDPANHSVRWAHKIDNSMVNTVRLLNNGRLLASTMDGKLVMLQWEK"
BASE COUNT          621 a          714 c          655 g          521 t
ORIGIN      
        1 ggattatcgc aacgaaaaga cccgcatcct ggtagccacc gatatcctga gccgcggcat
       61 cgacatcgat atcattgatc tcgtgatcaa ctacgatgtg ccccacgacg gcgaagacta
      121 tgtgcaccgt gtaggccaca ctgcccgtgc cgaaaggaat ggcacggccc ttaccatcat
      181 caaccccagg gatcagcgca agtttgcgca tattgaaagg ttgctggaga aggaagtgcc
      241 caagctgccg ctgccgccag aattgggccc cggaccagat tggaaaccct ttgagcgccg
      301 ggaaggtggc ggtgggcata aaggcggcca aaaaccctac cggggtggca aaggaaaggg
      361 tggaggacca caccgcggaa agccgagacc acaaggtgga gggaagccgc ctgcttcctg
      421 agataaaaga caacttcctc aaagtgtcgc attgcgtgac ccatagaaaa atgcagaagc
      481 actacttact ggcaggattg attatgctgc taggtgcatt ttcggtgaaa gggcaaaccc
      541 ccgtattcat ctcgggccag gagggctacc gcagttttcg cattccggcc attatttcct
      601 ggcaggccga taccctgctg gccttttgcg aaggccgggt gaacggggcg gccgattttg
      661 gcgatgtgga catcgtgatg aagcgcagca ccgatggcgg ccaaacatgg tcggccctgc
      721 aaaacgtggt ggataatggt gcgctacagg ccggcaaccc agcgccggtg gtcgatctca
      781 cggatcctgc ctatccccgg ggccgggtct ttttgtttta caactcgggc aaccgcaatg
      841 agcaggaagt aagaaaaggc aatggccttc gcgaagtgtg gtacatcact tcaaccgatg
      901 ccggccaaag ctggagccaa cccgtgaaca tcactacgca agtgcacaaa cccaaccagc
      961 ccggcgtgaa cgccgaatac cgcttttccg aagactggcg cagttatgcc aacacacccg
     1021 gtcatgccat tcaattgaaa cagggccaat accgcggccg cctgtatgtg gcggccaacc
     1081 actccgccgg cccgccattg ccaaaatttg aagactaccg ggcccatggc tactacagcg
     1141 atgaccacgg gaaaagcttt cagctgagca caaacgtgga actgcccggc agcaatgaag
     1201 ccatggctgc cgaactgcat gacggccgcc tggtgatgaa tatccgcaac cagcaggggg
     1261 gggtgcgccg ccgcatagtg gccatcagca gcaacggcgg caatacctgg gacagtgcct
     1321 ggttccaccc tcaactcatc gatccggtat gccagggcag cctcctcacc attggccgaa
     1381 aagggaagca cagcatcttg gccttttgca acccggcctc ggccggcagg cgggatagcc
     1441 ttaccctccg catcagctac aacagtggcg ccacctggga caaacaaata ctactggatg
     1501 ccaacccttc agtggatgat tacaccgctt attcagacct ggtattgctg agcaatggca
     1561 gcctgggtgt tttatatgag cgcaacaact atggtgagat tgttttcagg aaggtgattt
     1621 ggaaataacg cgaagctgcc ctttgaggtt attgcatttg ttgagccaca cactcattgc
     1681 cgggttggct atttttccca ttgcagcatt accagcttcc catccatggt actggccaac
     1741 aagcggccat tgttcagcag acgaacggta ttgaccattg agttgtcgat tttgtgagcc
     1801 cagcgaacag aatgatttgc cgggtcgatg gcatacacca cgccattgcg ggtaccaaag
     1861 aaaacgatgc cttcattttc tatcaacatt gaaggtgcat gttcatatcc atagcccacg
     1921 tgcattttca aagcagccga ttgcctggct ttgccggtgg caaaagcaac caccgtgtcc
     1981 tgcatggttt tcccataaac aaatctgcca tcccccgaca tgcccattga ttcacgtaca
     2041 gtggcttcat tgctgcgcca cagtgttttt cccgtaacag catcaatggc tgtgatatac
     2101 cggtcgggag ctaccacgta caccacactg tcatgcacgg tcggcacaca ggctgcgggc
     2161 gaaaaattcc gcacactggt cccgttgctc catttccatt tcagttggcc ggtaacagca
     2221 tccagcgcat agaggtaggt gtcccaggca ccaaaaatca cctggccatt ggatactacc
     2281 ggcgtagaca ctacaggtcc tttcaaacta tcaaatgacc aaagctgctt accggtcttc
     2341 aggtcaatgc aacggaaact atgatcgctt ccgccaataa aaactttttc gccattgatg
     2401 agtggtgaac caagcactgc cgccttggtg gtaaaccgcc acaattcatt tccctttttg
     2461 acatcgagac agtaaatgcg gccatctccc gatccaaata ccagcctgtt g
//
LOCUS       DATIQF010000110         3212 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_32219, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000110 DATIQF010000000
VERSION     DATIQF010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3212
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32219"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..344)
                     /locus_tag="VLL95_01710"
     CDS             complement(<1..344)
                     /locus_tag="VLL95_01710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37602.1"
                     /translation="MRKILVLLFTAAALLAKSQPITHPVSARYLGVFALSARQSDVLV
                     ARHNPAVHAGLKQAAAGAYAERRFMLEDLNLVNLSAGFNTRSGNFGVHTGYFGFAEQN
                     QLQASLAYGRKLG"
     gene            421..1344
                     /locus_tag="VLL95_01715"
     CDS             421..1344
                     /locus_tag="VLL95_01715"
                     /inference="COORDINATES: protein motif:HMM:NF014881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 5,10-methylenetetrahydrofolate
                     dehydrogenase/5,10-methenyltetrahydrofolate
                     cyclohydrolase"
                     /protein_id="HSR37603.1"
                     /translation="MSPRPMANPYLCAMQIMDGKVASAAIKEKVKQLVDERRVKGLKT
                     PHLAAILVGSDGASETYVASKVKTCGELGFASTLIRLDESTDEATLLDQIKKLNDDVD
                     VDGILVQLPLPKHISEDKVIETIDPSKDVDGFHPVSVGRLVQGLESFIPATPYGIMLM
                     LEHFQIPTVGKHAVVIGRSNIVGRPMSILLSSQLPYGNCTVTVCHSKTKNLKELTLQA
                     DIIVAALGRPGFLTGDMVKEGAVVIDVGITRVPDETKKKGFAIKGDVDFDSVAPHSSW
                     ITPVPGGVGLMTIGALMMNTLAACERKQVLI"
     gene            1406..2029
                     /locus_tag="VLL95_01720"
     CDS             1406..2029
                     /locus_tag="VLL95_01720"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HSR37604.1"
                     /translation="MTTIHTATDSQLPVMEAFYTLQGEGFHTGKAAYFIRLGGCDVGC
                     VWCDVKESWDASKHPRQSVAQIVQDALQFPGRMVVITGGEPLMHNLDALTAALHHAGF
                     SINIETSGSSPLSGQLDWICVSPKKFKAPLPEVLEQAHELKVVVFNKSDFEWAEKHAA
                     MVPANCKLYLQPEWDKRNEMTPLIVSYIQQHPQWQLSLQTHKYIGVP"
     gene            2120..2866
                     /gene="ubiE"
                     /locus_tag="VLL95_01725"
     CDS             2120..2866
                     /gene="ubiE"
                     /locus_tag="VLL95_01725"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: protein motif:HMM:NF001244.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052624 - 2-phytyl-1,4-naphthoquinone
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0042372 - phylloquinone biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HSR37605.1"
                     /translation="MYEHDSIKPFEGAEGSKKEQVATMFDQIAHRYDFLNRFLSAGID
                     VSWRKKAIRELKTVKPKYILDVATGTADVAILTYQLLQPKPEKIAGIDISDGMLELGR
                     KKLKERNLDPFITLYNGDSEAINFPDNTFDAITVAFGVRNFANLEKGLSEMLRVLKPG
                     GKLVILEFSKPTLPGIKGFYNLYTRMIAPKAGKVIARNEAAYKYLNDSIQAFPEGKRF
                     VSIMEKCGYAHCYKKALSLGICTIYCGSKL"
     gene            2911..>3212
                     /locus_tag="VLL95_01730"
     CDS             2911..>3212
                     /locus_tag="VLL95_01730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37606.1"
                     /translation="MKVLYREDRDNVPFYFGLSLGYASATFQPSKHPTFLQNDSILVA
                     EPVKSPGYSLRLMATARLNKRWEIRTNPGLVLGIERQFTYTLGSRQAYEEEKTVQK"
BASE COUNT          860 a          788 c          846 g          718 t
ORIGIN      
        1 cccagtttac ggccataggc caggctcgcc tgcagttggt tttgttccgc aaatccaaaa
       61 tagccggtgt gtacgccaaa gttgccgctg cgggtgttga atcccgccga caggttgacc
      121 aggttcagat cttcgagcat gaagcgacgt tcggcatagg cgcctgccgc ggcttgcttc
      181 aaacccgcat gcacggcagg attgtggcgg gccaccagca catcggactg ccgggccgac
      241 aaggcaaaca cgccaaggta acgggccgat accgggtggg tgatcggctg tgattttgcc
      301 agcagggcgg cggctgtaaa caacaggacg aggatcttgc gcaagggatg tgtggaattg
      361 tggaggggaa aattaaaaat ttcttcaggc tgttacaacc gaaagatcaa gtcgttatcg
      421 atgtcgcctc gccctatggc caacccttat ctttgcgcca tgcaaataat ggatgggaag
      481 gtggcatcgg ccgccattaa ggaaaaagta aaacaactgg tggacgaaag aagggtgaaa
      541 ggcttgaaaa cgccgcatct tgccgccata ctggtaggct ccgatggcgc cagcgaaact
      601 tatgtagcca gcaaggtgaa gacctgcggc gaacttggat ttgcttctac cctcatcagg
      661 ctggatgaaa gcaccgatga agccaccctg ctcgaccaga tcaaaaaact gaacgacgac
      721 gtggatgtgg atggcatttt ggtgcagctg cccctgccca aacacatttc ggaagacaag
      781 gtgattgaga ccattgaccc ctccaaagac gttgacgggt ttcacccggt aagcgtgggc
      841 cgactggtgc aggggctgga aagctttatt cctgccaccc cttatggcat catgctcatg
      901 cttgagcatt tccaaatacc taccgtgggc aaacatgccg tggtgatagg acgcagcaat
      961 attgtaggcc gccccatgag cattttgctc agcagccagt tgccctatgg taattgtacg
     1021 gtgaccgttt gccacagtaa aacaaaaaac ctgaaggaac tgaccctgca ggccgatatc
     1081 atagtggctg cgctgggccg gccaggattc ctgactggcg atatggtgaa ggaaggcgcg
     1141 gtagttattg atgtgggcat tacccgtgtg ccagacgaaa ccaagaagaa aggctttgcc
     1201 atcaagggcg atgtcgactt cgacagtgtg gccccccatt catcctggat cacgccagtg
     1261 cctggtggcg taggcctcat gaccattggt gcgctgatga tgaacacgct ggcggcctgc
     1321 gaaaggaaac aggtgcttat ttgatctttg gcccgaaaac cattgctggt aagaaatccc
     1381 atttcttcgc gtttcttttt tgttgatgac tacaattcat acggctactg attcccaact
     1441 tccggtgatg gaagcctttt acaccctgca gggtgaagga tttcacacag gcaaggcggc
     1501 ctatttcata agattaggcg gctgcgatgt gggctgtgta tggtgcgatg taaaagaaag
     1561 ctgggacgcc tccaaacatc ccaggcaatc ggtagcgcaa attgtgcaag acgccctgca
     1621 attcccgggt cgaatggtag tgataaccgg cggggaaccg ctcatgcaca acctggatgc
     1681 actgactgcg gcgctgcacc atgccgggtt cagcatcaac attgaaacct ccggctcctc
     1741 tcccctgtcc ggtcaactgg attggatctg tgtgtcgccc aaaaagttca aagctcccct
     1801 gcccgaagta ttggaacagg cccatgaact gaaggtggtg gtgttcaata aatcggattt
     1861 tgaatgggcc gaaaaacatg ccgccatggt gcccgcaaat tgcaagcttt atttgcagcc
     1921 tgagtgggac aagcgcaacg aaatgacccc attgattgta tcgtatatac aacaacaccc
     1981 gcaatggcag ctgagcctgc aaacacacaa gtatattgga gtaccataaa tggttgacgg
     2041 attatagttg acggttgatg gttgatggaa aaatcttaaa acattcccgg tagaaacggg
     2101 aatcagaaat taccaataga tgtacgaaca cgacagtata aagccatttg aaggcgccga
     2161 aggaagcaag aaagaacagg tagccaccat gttcgatcaa attgcccacc ggtacgattt
     2221 cctgaaccgt tttttgagtg caggcattga tgtgagctgg cgcaaaaagg ccatccgcga
     2281 attgaaaacg gtaaagccaa aatacatttt ggatgttgcc accggcactg ccgatgtagc
     2341 catccttacc taccagttgt tgcagcccaa accggaaaaa attgccggta tcgatatcag
     2401 cgatggaatg cttgaattgg gtcgcaagaa actgaaggaa agaaacctcg acccattcat
     2461 aacgctttac aatggcgaca gcgaggcaat aaattttcct gataatacgt ttgatgccat
     2521 tacagtagcg tttggcgtca gaaattttgc caaccttgaa aaagggctct ctgaaatgtt
     2581 gcgggtgctg aaacccggcg gaaaactcgt gatcctggaa ttcagcaaac ccaccctacc
     2641 cggcatcaaa ggcttttaca acctgtatac caggatgata gcgcccaaag caggaaaggt
     2701 gattgcccgc aatgaggctg cttacaaata cctgaatgac agcattcagg ccttccccga
     2761 aggaaaaagg tttgtaagca ttatggaaaa atgcggctat gcgcactgtt ataaaaaagc
     2821 gttgagttta ggaatatgta ctatctactg cggaagcaag ctatagtgtg tttttgctta
     2881 ctgactaccc tggccgtgca agcacaaaat atgaaggtgc tgtatcgcga agaccgcgat
     2941 aatgtaccct tctatttcgg gcttagtttg ggctatgcct ctgctacctt ccaaccgtcc
     3001 aagcatccca cttttttgca gaacgacagc atcctggtgg cagaaccggt aaaaagtccc
     3061 ggctattctc tcaggctcat ggccactgcc cgcctcaaca aacgctggga aattcgtacc
     3121 aaccccggct tggtgctggg catcgaaaga cagttcactt ataccctggg ttcgcggcag
     3181 gcttatgaag aggaaaaaac ggtacagaaa at
//
LOCUS       DATIQF010000111         7324 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_108301,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000111 DATIQF010000000
VERSION     DATIQF010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7324
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108301"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..511)
                     /locus_tag="VLL95_01735"
     CDS             complement(<1..511)
                     /locus_tag="VLL95_01735"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR37607.1"
                     /translation="MIRNFFKVAIRNLLKSKGFSIINLLGLSIGMASAMLICIWIVNE
                     LRFEQFHEKKDRIYEVWNKAAFSGKMNAWNTTPKVLARTLEKDVPEVEAAVRVDWTQN
                     KLFSIGEKRLMIRGNPVDSNFLQVLSFPLLQGNPAKALDGPRNLVITEDLAEKLFGTK
                     DAMGKEVKVD"
     gene            complement(531..2942)
                     /locus_tag="VLL95_01740"
     CDS             complement(531..2942)
                     /locus_tag="VLL95_01740"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSR37608.1"
                     /translation="MIGTYFKIAMRNLLRHKQHAILNILGLSTAMAACLVIFLVLRHE
                     TSYNKYLKDYKQLYHLTTIETSSDGQSVSGGTPFPAIDFLRKDFPQYQFGRTMVQTGN
                     QITVRTAANNTTAAKFYESDPLYFLDSNMLSFLDLKYLVGSAADLRDPSTVAISRSHA
                     EKYFGDYRQAIGRRLRINLYAADVQVGAVFEDIPHTSDFPMFMAGSFEFFKQQDGTGW
                     PLDDWGALSSNHQVYAKIPDAASAAGFKKTLEKYYTRYDRNSTKPRLGSLRPASSIHF
                     DEEVESNGDHVTRWSSIYTLAFVGLLILIMACINFVNLSTALSLTRNKEIGVRKVLGS
                     SSQQVRWQMLAETGVLVLVSMLLAWVLAWLTLPYIKHFMAVQSPLSLLSPWVLIFSAA
                     LMLATILLAGIYPAFFMSRFSPMAALRDKINVSGTRSSITRRTLVALQFACSQILIIA
                     TIISVAQMQFINSSDLGFNKSAILNVTVSSDSANYATLKVFKQALLARNDIEAVGFGF
                     YAPSSQNSWSSNFAFETTEDKPYNVRLKFADRDYYKVYGLKMAAGEVYGESDTTQSFI
                     VNEAFVQKAGLKNAGDAIGKMVRLGGGTPRPITGVVADYKQESLRTEVQPILMMPRSL
                     YYSMASIKLRSNNLSNSRQQIESLWNQYFPDLVFQAGFYDEDIENFYQQDQRLTSMYQ
                     AFALLAVIISCLGLYGLVSFMVVQKTREVGIRKVLGASIGHIVYMLSKEYVLLVIISF
                     ALAAPVGWWIMQNWLREFAYKVSLGPAVFLGALVISVLIAFGAVGYKSLKAATGNPVD
                     SLRSE"
     gene            complement(3007..3684)
                     /locus_tag="VLL95_01745"
     CDS             complement(3007..3684)
                     /locus_tag="VLL95_01745"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR37609.1"
                     /translation="MIKISNLEKYYRTEEVETVALNKLSLEVKEGEFVAVMGPSGCGK
                     STLLNIIGLLDDPDGGSFLFNGIEVAGFNERKRADLRKRNIGFVFQSFNLIDELTVFE
                     NVELPLIYCNVKPAERKARVEEVLDKMQIMHRRNHYPQQLSGGQQQRVAVARAVVNKP
                     KLILADEPTGNLDSSNGNEVMQLLTELNEQGTTIVMVTHSEHDAKYSHRIIRMLDGQT
                     VTENILV"
     gene            complement(3721..3894)
                     /locus_tag="VLL95_01750"
     CDS             complement(3721..3894)
                     /locus_tag="VLL95_01750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37610.1"
                     /translation="MNRKYYTALLYALLLGLPLLAALPNNRICNNTQKCSVKNTKASK
                     PVKAHHPLDFLMK"
     gene            complement(3917..5170)
                     /locus_tag="VLL95_01755"
     CDS             complement(3917..5170)
                     /locus_tag="VLL95_01755"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSR37611.1"
                     /translation="MDRVIEKKKWSTKKILSIGGIAAIVLLIAASYYFTSGKSKLNVD
                     TERITISTISKGAFQELIPVNGVVLPQTTIYLDALEGGRVEEKFVEDGAIMHKGDPIL
                     RLSNTDLELTLATQETSVFNVLTQMNISKSNATQNTTRQLNQMAEVENALTEAERVYK
                     LNKRLYEQKAIGEQEFRQSEIAYHYQVRRKKLTEDLLQQDAAAVKLMTTQDQKSLAQM
                     QHTLELMRKKVGDLVVRAPIDGQLTSLDAEIGQNITKGQRLGQLDDTTGFKVRVDIDE
                     HYISRVFTGQYGTFTFAGKDYKLRIKKVYTQVVNGRFQVDMEFENETPTGIRRGQTLQ
                     IRLALSDETQAILLSKGGFYQQTGGNWIFKVSEDGRKAFRVDISIGRQNPDYYELLQG
                     LKPGDKVITSSYENFGDIQELILKQ"
     gene            5248..5505
                     /locus_tag="VLL95_01760"
     CDS             5248..5505
                     /locus_tag="VLL95_01760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37612.1"
                     /translation="MPKPKSLKIKCSKNHLLKKCPLSIQILFAFVTLIHNRTGALKTV
                     ACNSANGFAGAAATATFEKGRHAVGSTPQTLAGFTEFQPIQ"
     gene            5502..6863
                     /locus_tag="VLL95_01765"
     CDS             5502..6863
                     /locus_tag="VLL95_01765"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HSR37613.1"
                     /translation="MTLKNANLLVIDDDVDVLTAVRLLLKSQVKSVTTEKEPSNIPSL
                     FSGGKDYDIIMLDMNFHASVNTGNEGLYWLRQIKQLGSKAAIIMITAYADVDLAVRSL
                     KEGATDFVVKPWQNDRLIETLKECLQKNTGTAAATLKPKTPGEKDWQMLGQSEAMQEV
                     FQKIEKVAPTDANILILGENGTGKDLVAKAIHEHSLRATGPYIKVDVGALTETLFESE
                     LFGHVKGAFTDAREDRIGRFEAANGGTLFLDEIGNISLQQQSKLLTVLQNRQVIRLGT
                     NQPHDIDIRLLCATNLPVQELAKESRFRKDLIYRINTVEIVLPPLRKRGNDIALLAQH
                     FVEMYAGKYMKPSIELHASAVDKLMKYHFPGNVRELQYAIERAVIMCDGAVIRDTDLI
                     FSPIEMAAPEEEEPGDTRLNVLERNTILKVIDKNNGNISKAAKELGLTRTALYRRLNK
                     YDI"
     gene            6853..>7324
                     /locus_tag="VLL95_01770"
     CDS             6853..>7324
                     /locus_tag="VLL95_01770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37614.1"
                     /translation="MTFKDYRIRLAIRTMLLFAVAFSIAFLFVKGYKQYAILLSLVAA
                     WQVYDLYLLLKRAQDEVKEFAESIHYRDFSRYFNVKTAPTELQPLREGFNEINNTFKE
                     IRSEKEMQYQYLQKILELVDTGILSFKTESGEINWINDTFKRMLNIPYMRTIESL"
BASE COUNT         1766 a         1797 c         1855 g         1906 t
ORIGIN      
        1 tatctacttt cacttccttg cccatggcgt ctttggtgcc aaaaagcttc tcagccagat
       61 cctctgtgat gaccaggttt cgtgggccat ccaatgcttt cgcaggattg ccttgcagca
      121 atggaaagct taacacctgc aggaagttgc tgtcaacagg attgccgcgg atcatgagcc
      181 ttttctcacc aatgctgaac agcttgttct gtgtccagtc cacccgcact gccgcttcta
      241 cttcaggcac atctttttcg agtgtgcggg ccaatacttt gggagtagta ttccacgcat
      301 tcattttgcc gctgaatgcc gctttgttcc aaacctcata aatgcggtcc ttcttttcgt
      361 ggaattgttc aaaccgtaat tcattcacga tccaaataca aatgagcatg gcgctggcca
      421 ttccaatgga taaacccagc aggttgataa tggagaagcc tttgctcttt agcaggttgc
      481 gtatcgctac tttgaaaaaa ttcctgatca tttattactg tttgtcgtaa ttattcagaa
      541 cgtaaactgt caaccgggtt accggtagct gctttcagcg atttgtatcc cacggcacca
      601 aaagcaatga gtacggatat caccagggca cccaggaata cggcaggtcc caggctcact
      661 ttgtaggcaa attccctgag ccagttttgc atgatccacc agcccacagg cgctgccagt
      721 gcaaaagaga tgatcaccag cagtacatat tctttcgaga gcatgtaaac aatatgcccg
      781 atactggcac ccagcacttt tcggatgccc acttccctgg ttttttgtac caccatgaat
      841 gaaacaaggc catacaaacc gaggcagctg atgataacag ccagcaaggc aaatgcctgg
      901 tacatgctgg taaggcgctg gtcctgttga tagaaattct cgatgtcttc gtcgtagaat
      961 ccggcctgga acaccaggtc ggggaaatat tgattccaga ggctttcaat ttgctgccgg
     1021 ctgttggaaa ggttattgct gcgcagtttg atgctggcca tgctgtaata aaggctgcgg
     1081 ggcatcatca ggatgggttg tacttctgtg cgcaacgatt cctgcttgta gtcagccacc
     1141 acgcctgtga tagggcgagg ggtgccgcca cccagtctta ccattttccc aatggcatca
     1201 ccggcatttt tcaaaccagc cttctgcaca aaggcttcat ttactataaa ggattgtgtg
     1261 gtgtcacttt caccatacac ttcaccggca gccatcttca ggccatacac tttgtaatag
     1321 tccctgtcgg caaatttcag gcgcacattg tagggtttgt cttccgtagt ttcaaaagcg
     1381 aagttggacg accaggagtt ctggctgctg ggtgcataaa agccaaatcc aactgcttcg
     1441 atatcatttc gggccagcaa cgcctgtttg aaaaccttga gtgtggcata gttggcactg
     1501 tcactcgaaa cagtcacatt gagtatggct gatttattga agccgaggtc gctgctattg
     1561 atgaactgca tttgcgccac cgaaatgatg gtggcaatga tgaggatttg agaacaggca
     1621 aactgcaaag caaccagtgt gcgacgggta atggagctgc gggtgccact gacatttatt
     1681 ttgtcgcgaa gcgctgccat gggcgaaaag cgactcatga agaatgccgg gtagatgccc
     1741 gccagcaaaa tagttgccag cattaatgca gcggagaaaa taagtaccca cgggcttagc
     1801 agcgacaatg gcgactgtac cgccatgaag tgtttgatat aaggcagtgt caaccaggca
     1861 agcacccacg ccagcagcat ggataccaaa acgagtacac ctgtttcagc cagcatttgc
     1921 cagcgcactt gctgcgagct gctgcccagt accttgcgta cgccaatctc tttattgcgg
     1981 gtcagcgaaa gggcagtgct gaggttgacg aagttgatgc aggccatgat gagaatgaga
     2041 aggcctacaa atgccagtgt gtaaatgctg ctccaccgtg ttacatgatc gccgttgctt
     2101 tctacctctt catcaaagtg aatgctgctg gcaggacgca aagagcccag ccttggtttc
     2161 gtgctgttgc ggtcatagcg ggtgtaatat ttctctagtg tttttttgaa gcctgctgct
     2221 gaggcggcat ccggaatttt cgcatatacc tggtgattgc tgctcagtgc tccccaatca
     2281 tccaatggcc agccggttcc atcctgctgt ttgaaaaatt caaaactgcc cgccatgaac
     2341 atcgggaagt cggaagtgtg gggtatgtct tcaaatacag cacccacttg cacatcggcg
     2401 gcatacaggt tgatgcgcaa acggcggcca atggcctgcc ggtaatcgcc aaaatacttt
     2461 tcggcatgcg aacggctgat ggctacagtg gagggatcac gaaggtctgc cgcactgccc
     2521 accaggtatt tcagatcgag aaaagacagc atgttgctgt cgagaaaata gaggggatca
     2581 ctttcgtaga acttggccgc tgtggtatta ttggcagccg tgcgaacagt aatttggtta
     2641 cctgtttgca ccatggtgcg gccaaactgg tattgcggga aatctttgcg caggaaatcg
     2701 atggcaggaa atggcgtacc accagaaaca gattggccat cagaacttgt ttcaatggta
     2761 gtcaggtggt agagttgctt gtaatctttg aggtatttgt tgtagctcgt ttcgtggcgc
     2821 aataccagga agatgacaag gcaggcagcc atagcggtac tcaggccaag gatattcaat
     2881 atcgcatgct gcttgtgacg cagcaggttc cgcatggcta ttttgaagta ggtaccaatc
     2941 atgtgtttcg gtgtaaatgg ttagggggtg agtcgtgtaa gaaaacagcg atgcttccgt
     3001 tccatcctat accaggatgt tctccgttac tgtctggccg tccagcatgc ggatgatacg
     3061 gtggctgtat ttggcatcgt gttcgctgtg cgttaccatc acgatagtgg tgccttgttc
     3121 attcagctcg gtcagcagtt gcatcacttc gttgccattg ctgctgtcca ggtttccggt
     3181 gggttcgtca gccaatatca gtttgggttt gtttacaacc gccctggcca ctgccaccct
     3241 ttgttgctgg ccaccgctca gttgctgcgg gtagtggttg cggcgatgca tgatctgcat
     3301 tttgtcgagt acttcttcca ccctggcctt tctttcggca ggctttacat tgcagtagat
     3361 cagcggaagc tctacgttct caaaaacagt gagttcatca atgaggttga agctctggaa
     3421 cacgaagcca atattgcgct tgcgcagatc ggcccgtttg cgttcgttga agccggctac
     3481 ttcaatgcca ttgaacagga agctgccacc atcgggatcg tcgagcaacc cgatgatgtt
     3541 gagcagggta ctcttgccac agccgctggg tcccatcact gctacaaact cgccttcttt
     3601 tacttccagc gacagtttat tgagcgctac ggtttccact tcttccgtgc ggtaatactt
     3661 ttcaaggttg gagatcttta tcatagtgtt ttttcagtta ttgattgcag gatggttgaa
     3721 ttacttcatg agaaagtcaa gcgggtgatg tgctttcaca ggctttgacg ctttcgtgtt
     3781 tttaacggaa cacttctgtg tattgttaca gatccggttg tttggcaaag cagccagcaa
     3841 tggcaggcca agcaacaatg catacagcag ggcggtgtag tattttctgt tcatggcggg
     3901 gtgtttatgg cggtggttat tgtttaagga tgagttcctg tatgtctccg aaattttcgt
     3961 agctgctggt gatcactttg tcgccgggct tcaggccttg cagcaattca tagtaatcgg
     4021 ggttttggcg gccaatagaa atgtcgaccc tgaatgcttt cctgccatct tccgatactt
     4081 tgaagatcca gttgccaccg gtttgctggt agaaaccacc tttgctcagc aggatggcct
     4141 gggtttcatc gctcagcgcc aaacgtatct gcagggtttg gccgcgacgg ataccagttg
     4201 gggtttcgtt ctcaaattcc atatccacct ggaagcggcc attcaccacc tgcgtgtaca
     4261 ccttcttgat ccgcagtttg tagtctttgc cggcaaaagt gaatgtgccg tactggccgg
     4321 tgaatacgcg gctgatgtaa tgctcgtcga tatccacccg cactttgaac ccggtggtgt
     4381 catccagctg gccaaggcgc tgacccttgg tgatgttctg cccgatttcc gcatccagtg
     4441 aggtcagttg cccgtcgatg ggagccctta ctaccaggtc gccgactttc ttacgcatca
     4501 gctcgagtgt gtgttgcatt tgggccagcg atttctggtc ctgtgtggtc atgagtttta
     4561 ccgctgctgc gtcttgttgt aacagatctt ctgtgagctt tttgcggcgc acctggtagt
     4621 ggtaggctat ttccgactgc ctgaattcct gctccccgat tgctttctgt tcgtacaatc
     4681 gcttgttcag cttgtacact cgttctgctt cggtgagtgc attttctact tcggccatct
     4741 ggttcaactg gcgggtggtg ttttgtgtgg cgttgctttt cgaaatgttc atttgtgtga
     4801 gtacgttgaa cacagaagtt tcctgggtag ccagggtcaa ttcgaggtca gtattgctga
     4861 gtcgaaggat ggggtcgccc ttgtgcatga tggccccatc ttctacaaat ttttcttcca
     4921 cccttccgcc ttccagggca tccaggtaga tggtggtttg tggcagcaca acaccgttta
     4981 caggaatcag ttcctggaaa gcacccttgc tgatggtgct gatggtgatg cgttcagtgt
     5041 ctacattcag cttgcttttg ccactggtga aataatagct ggctgcaatg agcagtacaa
     5101 tggctgctat gccaccaatg ctgagaatct tctttgtcga ccattttttc ttttcaatta
     5161 cgcgatccac tgtgctgttg ttttactgtt ttgcaatgtg ccgttgtgtg tgcacgggtg
     5221 tgtgatacca aactacctgt aaacaatgtg ccaaaaccta aatcattgaa aatcaagtgc
     5281 tctaaaaatc accttttaaa aaagtgtccg ctttcgatac aaattctgtt cgctttcgtt
     5341 acactgatac acaaccggac tggtgcgttg aaaacagttg cctgcaattc cgcaaacggc
     5401 tttgcaggtg cagccgcaac tgctacattt gaaaaaggca ggcacgctgt tggttcaaca
     5461 ccgcaaacgc tggccggctt caccgaattt caaccaatac aatgacccta aagaacgcca
     5521 acctgctggt gatagacgac gatgtggacg tgctgaccgc cgttcgcctg ctgctgaaat
     5581 cgcaggtaaa atcggtgaca acggaaaagg aaccttccaa tattccatcc ctcttcagtg
     5641 gcggaaaaga ctatgacatc attatgctcg acatgaattt tcatgcgagt gtaaataccg
     5701 ggaatgaagg tttgtactgg ctgcgccaaa taaaacagtt gggcagcaag gcggccatca
     5761 tcatgataac ggcttacgcc gatgtagacc tggcagtacg cagcctgaaa gaaggagcta
     5821 ctgattttgt ggtgaagccc tggcaaaacg accggttgat tgaaaccctg aaagaatgcc
     5881 tgcaaaaaaa tacagggacc gcggcagcaa cgctcaagcc gaaaacaccc ggcgaaaaag
     5941 actggcagat gctgggccaa agcgaggcca tgcaggaagt gttccaaaaa attgagaaag
     6001 tagcccccac ggatgccaac atcctgatac tgggtgaaaa cggtaccggc aaagacctgg
     6061 tggcgaaggc catccatgaa cattctttgc gggccactgg cccctacatt aaggtggatg
     6121 tgggtgcgtt gacagaaaca cttttcgaga gtgaattatt cggccacgta aaaggcgctt
     6181 tcaccgatgc ccgcgaagac cgcatcggtc gctttgaagc agccaacggc ggtacgcttt
     6241 tcctggatga gatcggtaac atcagtttac aacagcaatc gaaactgctg accgtgctgc
     6301 aaaacaggca ggtgatacgg ctcggtacca accagccaca cgatatcgac atcaggctgc
     6361 tgtgcgccac caacctgccg gtgcaggaac tggccaaaga aagccgcttt cgcaaagacc
     6421 tgatctaccg catcaacacc gtggaaattg tattgccgcc ccttcgcaaa agaggcaacg
     6481 atattgccct gctggcacag cacttcgtgg aaatgtatgc aggcaagtac atgaagcctt
     6541 ccattgaatt gcatgcttca gcggtagaca aactcatgaa gtaccatttc cccggcaatg
     6601 ttcgcgaact gcaatacgcc atcgaaagag cggtgatcat gtgcgacggt gctgtcatcc
     6661 gcgataccga tctgattttc tctcccatag aaatggcggc gcctgaagaa gaagaacccg
     6721 gcgatacccg cctgaatgtg ctggaacgaa acactattct taaagtgatt gacaagaata
     6781 atggcaacat cagcaaagca gccaaagaac tgggcctgac caggactgcc ttgtatcgcc
     6841 gcctcaacaa gtatgacatt taaagattat cgcatacggc tggccatcag aacaatgctg
     6901 ctttttgcag tggcattcag cattgccttc ttgtttgtga aaggctacaa gcaatacgcc
     6961 atcctcctgt cgctggtcgc ggcatggcag gtatacgatt tgtacttgtt gctgaagcgg
     7021 gcacaggatg aagtgaagga gtttgccgaa agcattcact accgcgactt cagccgctat
     7081 ttcaacgtga agacggcgcc tactgaattg cagccattgc gggagggctt caatgaaatc
     7141 aacaacacct tcaaggaaat acgcagcgaa aaagaaatgc aataccagta cctgcaaaag
     7201 atccttgaac tggtagatac cggtatcctt tccttcaaaa cggaaagcgg cgaaatcaac
     7261 tggatcaacg atacattcaa acgcatgctg aacattccct acatgcgcac cattgaatcg
     7321 ctgc
//
LOCUS       DATIQF010000112         2453 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_229966,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000112 DATIQF010000000
VERSION     DATIQF010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2453
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229966"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..494)
                     /gene="rplJ"
                     /locus_tag="VLL95_01775"
     CDS             complement(<1..494)
                     /gene="rplJ"
                     /locus_tag="VLL95_01775"
                     /inference="COORDINATES: protein motif:HMM:NF000955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HSR37615.1"
                     /translation="MTKEQKNEVIEVLKEKFSQYSNFYVTNTESLTVAQVSKLRRVCF
                     DKQVEMKVAKNTLIKKALEALDAEKYAGVYESLNNVTALMFSESPKEPALILSSFRTE
                     SKGEKPVLKAAFINGDVFVGDNQLVTLTKIKTKNELIGEVIGLLQSPAKRVLSALLNK
                     AEGGA"
     gene            complement(574..1266)
                     /gene="rplA"
                     /locus_tag="VLL95_01780"
     CDS             complement(574..1266)
                     /gene="rplA"
                     /locus_tag="VLL95_01780"
                     /inference="COORDINATES: protein motif:HMM:TIGR01169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HSR37616.1"
                     /translation="MKLTKKRKVAEARVDKNKVYTLSEAASLVKEINCTKFDSSVDLH
                     IRLGVDPKKADQAIRGTVTLPHGTGKTKRVLVLCTPDKENEAKAAGADFVGLDEFIQK
                     IEGGWTDVDVIVATPAVMPKIGKLGKILGPRNLMPNPKTGTVTNDVAAAVNDLKGGKI
                     AFKVDKAGIIHASIGRVSFAPEKIAENTNELVNAIIKLKPSTAKGTYLKGISIASTMS
                     PGIAVDTKTFIH"
     gene            complement(1293..1739)
                     /gene="rplK"
                     /locus_tag="VLL95_01785"
     CDS             complement(1293..1739)
                     /gene="rplK"
                     /locus_tag="VLL95_01785"
                     /inference="COORDINATES: protein motif:HMM:TIGR01632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HSR37617.1"
                     /translation="MAKEITGYVKLQCKGGQANPAPPIGPALGSKGLNIMEFCKQFNA
                     RTQDKMGKVLPVLITVYNDKSFDFVIKTAPAAVQLMEAAKIQKGSKESNRQKVGKVTW
                     EQVEAIAKDKMPDLNCFTLESAMKMVAGTARSMGLNVEGKAPWENN"
     gene            2079..>2453
                     /locus_tag="VLL95_01790"
     CDS             2079..>2453
                     /locus_tag="VLL95_01790"
                     /inference="COORDINATES: protein motif:HMM:NF012893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-transporting P-type ATPase"
                     /protein_id="HSR37618.1"
                     /translation="MNLPSTMANQAFHAIDIPAIEEELQTSRHTGLSSTEAGRRLTFY
                     GANKLPSKGRTSILTIIGRQLLNPLVFILIAAALASLAIGDSKDAIFICAIILLNTAL
                     GAYQEYNAEKSASSLQQMLRIKA"
BASE COUNT          592 a          594 c          553 g          714 t
ORIGIN      
        1 gcaccacctt cagccttatt caacaaagca ctcagcacac gcttggcagg gctttggagc
       61 agaccgatca cttcaccaat cagttcattc ttggtcttga tcttagtgag cgtaaccagc
      121 tgattgtcgc ctacaaacac atcaccattg atgaaggccg ctttcaatac cggcttttca
      181 ccttttgatt cagtgcggaa agagctgagg atcaaagcag gctccttggg gctttcagaa
      241 aacatcaacg cagttacgtt gttgaggctt tcatacacgc cagcatactt ttcagcatcc
      301 agggcttcga gggccttctt gatgagggtg ttcttggcca ccttcatttc cacctgcttg
      361 tcgaagcaaa cgcgacgcag tttgcttacc tgtgctaccg tcaggctttc ggtatttgta
      421 acgtagaaat tgctgtactg ggagaatttc tccttcagca cctcaatcac ttcatttttt
      481 tgttctttag tcatttcgat tcgttttgag tgttattgga tatcaacact cctcttaggc
      541 cttccgcctc agcggagagg gttcggaggg gccttagtga atgaacgttt tagtgtcaac
      601 ggcgatacca ggactcatgg tgctggcaat gctgatgcct ttcaggtagg ttcccttagc
      661 agtgctgggc ttcagcttga tgatggcatt cacgagttcg ttggtgtttt cagcaatctt
      721 ttcaggtgcg aaagacacac gaccgataga agcgtgaatg ataccagcct tgtccacctt
      781 gaaagcgatc ttaccgcctt tcaagtcgtt aacggcagca gctacatcat tggtaacggt
      841 accagtcttg gggttgggca tcaggttgcg gggaccgagg atcttaccca gcttaccaat
      901 cttaggcata actgcaggag tagctacaat tacatctaca tcggtccagc caccttcaat
      961 cttctggata aattcatcca ggcctacaaa atcagcgccg gctgccttgg cttcattctc
     1021 cttgtcagga gtgcaaagaa ccagtacacg cttggtttta ccagtgccat gaggcagggt
     1081 aacggtacca cgaatagcct ggtcggcttt cttggggtct acgcccaaac ggatatgcag
     1141 gtcaacagag ctgtcgaatt tggtgcagtt gatctctttt accagagagg ctgcctcgct
     1201 cagggtatat actttgttct tatcaaccct ggcttcagcc acttttcttt tcttagtcag
     1261 tttcatgatt aatacttttt aggttgatag aattagttgt tttcccaagg cgctttgcct
     1321 tctacattca ggcccatgct gcgggcagta ccggcaacca ttttcatggc gctttccagg
     1381 gtgaagcagt tcaggtcggg catcttgtct tttgcaatag cctctacctg ttcccaagtc
     1441 accttaccta ccttctggcg gttgctttcc ttcgatcctt tctggatctt ggcagcttcc
     1501 atcagctgta cggcagcggg agcggtttta ataacgaagt cgaaagattt gtcgttgtaa
     1561 acagtaatca acactggaag aaccttaccc attttgtcct gggtacgggc gttgaattgc
     1621 ttacagaact ccatgatgtt caggccctta gaacccaaag caggtccaat tgggggcgca
     1681 gggttggctt gtcctccttt gcattggagc ttcacatagc cagtgatttc tttagccatt
     1741 ctaaaaattt ttttggtgtt aacgtagggg ccctattgcc actactccca aatccatgag
     1801 ctgtttttgc cgaagcatac cacagcgtcc aaagaacttt ttggggccgc aaaagtaggt
     1861 atccttattg taatcaacaa cttattgatt tcttttttgg cccaccgatt gaattttaac
     1921 gagataggat tgtacctaat cgcttttgcg gctacaaaaa tgaaataatg tgccttgcca
     1981 tggcatagaa ttcttcaaat caggcaaaag aagaatttta cagtattttg atcagctggc
     2041 taccagcatt gaataatttg aagcacaatt atcgccgaat gaatttaccc tctaccatgg
     2101 ccaaccaggc ctttcatgcc attgatattc ctgccattga agaagaattg caaaccagca
     2161 gacacacagg tttgtccagt accgaagccg ggcgaagact aacgttttac ggtgcaaata
     2221 agctgcccag caagggccgc acaagtattc tcaccattat aggccgccag ttgttgaatc
     2281 cgttggtttt tattcttatt gccgcagcat tggcttcatt ggcaataggc gatagcaaag
     2341 acgccatttt catttgtgca attattctgc tgaacactgc actgggtgcc taccaggaat
     2401 acaatgccga aaaaagtgct tccagtttgc agcaaatgct cagaataaag gca
//
LOCUS       DATIQF010000113         1743 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_199569,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000113 DATIQF010000000
VERSION     DATIQF010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199569"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..271
                     /locus_tag="VLL95_01795"
     CDS             <1..271
                     /locus_tag="VLL95_01795"
                     /inference="COORDINATES: protein motif:HMM:NF016152.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HSR37619.1"
                     /translation="YKVAGKMFALTDINTFESINLKCDPDLAVELRERYPAVLPGYHM
                     NKKHWNTVLMDGSISNQLIRDWFRQSYDLVAASLPKATREKYGFN"
     gene            344..>1743
                     /locus_tag="VLL95_01800"
     CDS             344..>1743
                     /locus_tag="VLL95_01800"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSR37620.1"
                     /translation="MRRLLAILIAFGTTAQAQVKEIPDLVAAQQQALLKEYLDFLAIP
                     NIMGDSVNIHRNAAFIKNMMEQRGIKTEVLTLPVKGASPLVYGEVMVPGATTTIGFYA
                     HYDGQPVNPAQWAKGLEPFKPQLTTDRLDRGGKMIDNNTLPAKVPDTWRIYGRGSSDD
                     KAGVFAIIAAYEMFTKSGKMPKANLKFIFEGEEEAGSVNLGQYFNQHQSKLKTDLWII
                     CDGPRHVSGRKQLVFGVRGDVNADLTVYASARPLHSGNYGNWAPNPAMRLAQLLAGMK
                     DEKGMVTIPGFYDDVVPLTAEEKEAIKNIPDVTATLRDELAMINPDGDGRNFQELLNI
                     PTLNINGIAAANVGSMASNIIPAEAKAVLDMRLVKGNSVEGQFNKVKRYIESKGYHVL
                     DHDPSMEERKQYPLIAKLTMRSGGYPAQKTSMSLPMAAKVIAAIQTTTPDPVIKQPTV
                     GGSLPLYIFETILQSPP"
BASE COUNT          483 a          446 c          458 g          356 t
ORIGIN      
        1 gtacaaggtg gccgggaaga tgtttgccct caccgacatc aacacttttg aaagcatcaa
       61 cctgaaatgc gatccagacc ttgcggttga gcttcgcgaa cgatatcccg ctgtgctgcc
      121 cggctaccac atgaacaaaa agcattggaa cacggtgctg atggatggca gcatcagcaa
      181 tcagctgatc cgcgattggt tcaggcagtc gtatgacctg gtggccgctt cgctgccaaa
      241 agcgacacgg gagaaatatg gattcaactg aatccctggc cgggaaaatc ttttgcctta
      301 ttagaagcgg aaatcataga ttggcattct acaactgacg catatgagaa gattgctggc
      361 gatccttatt gcctttggta caactgcaca ggcacaggta aaagaaattc cggacctggt
      421 tgctgcacaa cagcaggcct tgttgaaaga gtacctcgac ttcctggcca ttcccaacat
      481 catgggcgac agtgtgaaca ttcatcgcaa cgccgcattc atcaaaaaca tgatggagca
      541 aaggggaatc aaaacggaag tactcaccct gccagtgaag ggggcgagtc ccctggtgta
      601 cggcgaagtg atggtgcccg gcgccactac caccattggc ttttatgcgc attacgacgg
      661 gcagcccgta aaccctgcac aatgggccaa aggtttggaa cccttcaaac cacagctgac
      721 cactgaccga ttggaccgtg gtggcaaaat gatcgataat aataccttac cggccaaagt
      781 gcccgatacg tggcgcattt acggaagggg cagtagcgat gacaaggctg gcgtgtttgc
      841 catcattgca gcgtatgaaa tgtttaccaa aagcgggaaa atgcccaaag ccaacctcaa
      901 gttcattttc gagggagagg aagaagcagg ttccgtcaac cttggtcagt atttcaacca
      961 acaccaatca aaactgaaaa cagatctctg gatcatttgc gacgggccgc gtcatgtgag
     1021 tggacgcaag caactggtat ttggggtgag gggtgatgtg aacgctgacc tcaccgtgta
     1081 tgcatcagca cgtcccttgc acagtggcaa ctatggcaac tgggccccca acccggccat
     1141 gcgcctggca caactgctgg ctggcatgaa ggacgagaaa gggatggtga ccataccggg
     1201 tttttatgat gatgtggtgc cgctgactgc tgaagaaaag gaagccatca aaaacatacc
     1261 ggatgtaacg gcaacactgc gggatgaact ggcaatgata aaccccgatg gcgatggccg
     1321 caacttccag gaattgctca acatccctac gctcaacatc aacggaatag cagctgccaa
     1381 tgtgggcagc atggccagca atatcattcc ggcggaagcc aaagcagtgc ttgatatgcg
     1441 tttggtaaaa ggaaattcgg tggaaggtca gttcaacaaa gtgaagcgat acattgaaag
     1501 caaaggctac cacgtgttgg accacgatcc ttccatggaa gaaagaaagc agtacccgct
     1561 gatcgccaaa ctgacgatgc gcagtggcgg ctacccggcg cagaagacct ccatgagttt
     1621 gcccatggct gccaaagtga ttgcggccat ccaaaccacc acccctgatc ctgtgatcaa
     1681 gcagcctact gtgggtggca gtttgccact ttacatattt gaaaccatcc tgcagtcacc
     1741 acc
//
LOCUS       DATIQF010000114         1825 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_138842,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000114 DATIQF010000000
VERSION     DATIQF010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138842"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..493
                     /locus_tag="VLL95_01805"
     CDS             <1..493
                     /locus_tag="VLL95_01805"
                     /inference="COORDINATES: protein motif:HMM:NF012379.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
                     /protein_id="HSR37621.1"
                     /translation="MDEAQLRDVCKQLHIEVAPSMGKGKLIDEIFGATSEHTFIQPTF
                     IIDYPVEMSPLTKKHRSKPGLVERFELMVNGKELANAYTELNDPIDQRQRFEDQLKLM
                     QRGDDEAMFIDFDFLRALEYGMPPTSGIGIGIDRLCMYMMNQVSIQDVLFFPMMRPEK
                     FEE"
     gene            631..1656
                     /gene="pheS"
                     /locus_tag="VLL95_01810"
     CDS             631..1656
                     /gene="pheS"
                     /locus_tag="VLL95_01810"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HSR37622.1"
                     /translation="MTELVSQIERYKAEIADFNADNAEALETFRIKFLGTKGLVKSLM
                     GEMKNVPNEQKREFGQIMNSFKQVAEERYEALKTALENNTEFSFNYDITLPGDALPLG
                     SRHPISLVRNRIVDIFKRLGFAVAEGPEIEDDWHNFGALNLPEDHPARDMQDTFYISQ
                     DPAWLLRTHTSNVQIREMEKGQLPIRLIMPGKVYRNETISARAHCFFHQVEGLYVAEN
                     VSFADLKQTLYFFVKEMFGQSVKIRFRPSYFPFTEPSAEMDISCLICGGKGCNVCKHT
                     GWVEILGCGMVHPNVLQNCGIDPNKYTGFAFGMGIERITMLKYGVKDLRLFSENDVRF
                     LKQFTGA"
BASE COUNT          453 a          499 c          469 g          404 t
ORIGIN      
        1 tatggacgaa gcgcagctgc gtgacgtgtg caagcagcta cacattgaag tggctcccag
       61 catgggcaaa ggcaagctga tcgacgagat ctttggtgcc accagcgagc atactttcat
      121 tcagcccacg ttcatcatcg actacccggt agagatgagc ccgctgacca aaaagcaccg
      181 aagcaagccg gggctggtag agcgttttga gctgatggtg aatggcaagg aactggccaa
      241 cgcctacacc gaactgaacg accccatcga ccagcgccag cgttttgaag accagctgaa
      301 actgatgcag cgtggcgatg acgaagccat gttcatcgat ttcgacttcc tgcgtgccct
      361 cgaatacggc atgccgccta cctcgggcat cggcatcggg atcgaccgcc tgtgcatgta
      421 catgatgaac caggtgagca tccaggatgt gctgttcttc ccgatgatgc ggccggagaa
      481 gtttgaagaa tgactttgat ttaaccacgg aggcgaagga ggtaaacaca gaggccctca
      541 gtgctactct gtgaaagcct ctgattcctc tgtggttaat tagcaataac ctaaaatcac
      601 acccattcca tcatttacct ttgacagacc atgacagaac tagtttctca aatagaacga
      661 tacaaagccg agatcgccga tttcaatgcc gataatgccg aagcattgga aactttccgc
      721 atcaaattcc tgggcacgaa gggcctggtg aaaagcctga tgggcgaaat gaaaaatgtg
      781 cccaacgagc agaagcggga gtttggccag atcatgaaca gcttcaagca ggtggctgaa
      841 gaacgctacg aggccctgaa aacggctttg gaaaacaaca ctgagttcag cttcaactac
      901 gacatcaccc tgccgggcga cgcgttgcca ctcggtagcc gtcaccccat cagcctggta
      961 cgcaatcgca ttgtcgacat tttcaagcgc ctgggttttg ccgtggcaga aggtccggag
     1021 attgaagacg actggcacaa cttcggcgcc ctcaacctgc ccgaagacca tccggcccgc
     1081 gacatgcagg ataccttcta catcagccag gacccagcgt ggttgctgcg tacgcatacc
     1141 agcaatgtgc agatccgtga aatggagaaa ggccagctgc ccattcgcct tatcatgccg
     1201 ggcaaggtat accgcaatga aaccatcagt gcccgtgccc actgcttctt ccaccaggta
     1261 gaaggtttgt acgtggccga aaatgtaagc ttcgccgatc tcaagcaaac actgtacttc
     1321 tttgtgaagg agatgtttgg ccaaagcgtg aagatccgtt tccgtcccag ctattttccc
     1381 tttaccgaac ccagcgccga aatggacatc agttgcctga tctgcggtgg caagggttgc
     1441 aatgtgtgca agcacaccgg ctgggttgaa attctgggtt gcggcatggt gcatcccaac
     1501 gtgttgcaga attgcggcat cgaccccaac aagtacaccg gctttgcctt tggtatgggc
     1561 attgagcgca tcaccatgct gaagtacggc gttaaagatc tgcgcctgtt cagcgaaaac
     1621 gatgtgcgct tcctgaagca gtttacagga gcgtaacccc caacccccta aagggggctt
     1681 acaagtattt ttccatcgtc cccgtctccc ggcggggacg atttgttttc atcgactttt
     1741 gtcgatagcc cgcattcatt tcttttcttt gccgcatgcc attttcaacc attcatacca
     1801 tttgcgtatg cggcgccggt accat
//
LOCUS       DATIQF010000115         1698 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_62659, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000115 DATIQF010000000
VERSION     DATIQF010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1698
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62659"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1698
                     /locus_tag="VLL95_01815"
     CDS             <1..>1698
                     /locus_tag="VLL95_01815"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37623.1"
                     /translation="HDLWIDPENGKRMIVADDGGAQVSFDGGVNWSTYMNQPTVQVYR
                     VSTDNAFPYHILGGQQDNGAFRIKSRTYGSAITNADLEDAAGSESGYVVADPLNPDIT
                     YGGNYHGMLERKDHRTDESKLINVWPIDNMGAGADVAKYRFQWNYPIFFSPHNPKRLY
                     AAGNHLFVTENEGRSWEMISPDLTTNDKSKQGPSGGPITKDNTTVEYYCTIFTAAESQ
                     LEKDLLWTGSDDGLIHVSKDGGKNWENVTPKGIPAQMMWNCVEVDPFKKGAAYFVGTR
                     YKLDDFAPYLFKTEDYGKTWKRIDGNIPRLHFTRALRADQKRPGLIYVGTEYGMYMSY
                     DDGANWNTFQLNMPMVPITDMTIKNNDLIVGTQGRSIYILDDLTPVQEYKSESANANL
                     KVFTPAPAYRMQGGGFFFGFGGGGGDKNVGKNPPKGAVIPFYLKAAPDTLKGSVTVMD
                     KNRNVIKTFSTDSKDNKLEVKEGLNMFAWDLNYPEGEKVPETVILWNRARMIPMAPPG
                     DYIAKFKMGNDSAETKFTVLADPNYKVSQEEYEAQFNFLRKAQGKFDEVMKAQKDMG"
BASE COUNT          479 a          472 c          422 g          325 t
ORIGIN      
        1 accacgatct ctggatcgac ccggaaaatg gcaagcgcat gatagtggcc gatgatggcg
       61 gcgcccaggt aagttttgat ggcggcgtaa actggagtac ttacatgaac cagcccaccg
      121 tgcaggtgta ccgcgttagc accgacaatg ctttccccta tcatatcctt ggtggccagc
      181 aggacaatgg cgccttccgc atcaagagcc gcacctatgg cagcgccatt accaatgccg
      241 acctggaaga tgcagccggc agtgaaagcg gttacgtggt agccgatccg ctgaaccccg
      301 acatcactta tggtggcaac taccatggca tgctcgaacg caaagaccac cgcaccgatg
      361 aaagcaaact catcaacgta tggcccatcg acaacatggg tgccggcgct gatgtggcca
      421 aataccgctt ccagtggaac taccccatct tcttcagccc gcacaatccc aagcgcctgt
      481 atgctgccgg caaccatttg ttcgtgaccg aaaatgaagg ccgcagctgg gaaatgatca
      541 gccccgacct gaccaccaac gacaagagca agcaaggccc cagcggcggt cccattacca
      601 aagacaatac cactgttgaa tactattgca ccattttcac agcggcagaa agccaactgg
      661 aaaaagacct gctctggacc ggcagcgatg atggcctcat ccatgtaagc aaagacggtg
      721 gcaaaaactg ggagaacgtt acgcccaaag gcatcccggc ccaaatgatg tggaactgcg
      781 tggaagtgga tcccttcaaa aaaggcgccg cttactttgt gggtacccgc tacaagctgg
      841 atgactttgc gccttacctc ttcaagacag aagactacgg caagacctgg aaacgaatag
      901 atggcaatat cccccgcctg catttcacca gggccctgcg tgccgatcaa aaacgccccg
      961 ggcttattta tgtgggcacc gagtatggca tgtacatgag ctacgatgat ggggccaact
     1021 ggaatacttt ccagctcaat atgccgatgg tacccattac cgacatgacc attaaaaaca
     1081 acgatctcat cgtaggtaca caaggccgca gcatttacat cctggatgat cttactcctg
     1141 tgcaggaata caaatcagaa tctgctaatg ccaacctgaa ggtatttacg ccggcacctg
     1201 cctatcgcat gcagggcgga ggatttttct ttggctttgg tggcggtggt ggcgacaaga
     1261 atgtcggcaa aaacccaccc aagggtgctg tcattccatt ctacctgaag gctgcacctg
     1321 acaccctcaa gggaagtgtg accgtaatgg acaaaaaccg gaacgtgatc aaaaccttca
     1381 gcaccgacag caaagacaat aaactcgaag tgaaagaagg cctcaacatg tttgcctggg
     1441 atctcaatta tcctgaagga gaaaaagtgc ctgaaaccgt tattctctgg aaccgtgccc
     1501 gcatgatacc catggcgcct cccggtgact acatcgccaa attcaaaatg ggcaacgaca
     1561 gcgccgaaac caaattcacc gtactggccg atcccaacta caaagtgagc caggaagagt
     1621 atgaagcgca gttcaacttc ctgcgcaaag cacagggcaa atttgatgag gtaatgaaag
     1681 cgcagaagga catgggcg
//
LOCUS       DATIQF010000116         1518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_214758,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000116 DATIQF010000000
VERSION     DATIQF010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214758"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..564)
                     /locus_tag="VLL95_01820"
     CDS             complement(<1..564)
                     /locus_tag="VLL95_01820"
                     /inference="COORDINATES: protein motif:HMM:NF021492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR37624.1"
                     /translation="MADNKNIQFEEVVDESTAVIAKAKGFWGRFSKPIIYVGSAIIII
                     LGGYYGYQKFYVEPQEEKAAEAIWHAQQYFQQDSLQLALNGDGQHQGFEKVAKSYGGT
                     KVGNLAKFYAGVCALRLGDFKKAEGYLKDFSTDSKEIQAIAYSRLADVYAEQGKKAEA
                     VDMYAKAGHFYPEQEALSDENLFRAGLL"
     gene            complement(604..>1518)
                     /gene="pdhA"
                     /locus_tag="VLL95_01825"
     CDS             complement(604..>1518)
                     /gene="pdhA"
                     /locus_tag="VLL95_01825"
                     /inference="COORDINATES: protein motif:HMM:TIGR03182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045250 - cytosolic pyruvate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HSR37625.1"
                     /translation="EMYKMAGKIRGFFHAYVGQEAIAAGCMTATRLEDPYVTGYRDHG
                     LAIAKGISPQSCMAELYGKATGYAKGKGGSMHFFGVENFFFGGHGIVGAQIGTGAGLA
                     FAEQYKGTDNVCLTFFGDGAARQGMLHEVFNMAMTWKLPVIFICENNNYAMGTSVERT
                     SNVRDIYTLADAYDMPGDEVDGMHPEAVHEAVERAVKRAREGGGPTLLEMKTYRYKGH
                     SISDPQKYRTKEEVEEYKQRDPIEQILMTIRGEGLATQEELEVIHQRVDAIVEDSVKF
                     AEESPWPDDSEVLKDVYAVDEPHLFVND"
BASE COUNT          316 a          421 c          372 g          409 t
ORIGIN      
        1 taagagtcct gcacggaaca ggttttcatc gctcagtgct tcctgctcgg ggtagaaatg
       61 accagccttg gcatacatgt caacagcttc tgctttcttt ccctgctcgg cataaacatc
      121 cgccagtctt gaataggcaa tagcctggat ctccttggaa tcagtgctga aatctttcag
      181 gtagccttct gcttttttga aatcgccgag acgcagggcg caaacaccgg cataaaactt
      241 agcgaggttg ccaaccttgg tgccgccata gctcttcgcc actttttcaa aaccctggtg
      301 ctggccatcg ccattcagcg ccagttgcag gctgtcttgc tgaaagtatt gctgcgcatg
      361 ccagatggct tcggcagctt tttcttcctg gggctccacg taaaacttct ggtagccata
      421 gtagccgcca aggatgatga tgatggcact gcccacataa atgatcggct tgctgaagcg
      481 tccccaaaag cccttggctt tggcgatcac cgcggtcgat tcatccacta cttcttcaaa
      541 ctggatattc ttgttatcag ccattttttg ttcgttgtaa ttgaatattg gtattgatgg
      601 ttattaatcg ttcacaaaga gatggggctc atccacagcg tacacatctt tcagtacttc
      661 gctgtcatcg ggccaggggc tttcttccgc aaacttcacg ctgtcttcta caatggcgtc
      721 caccctttga tggatcactt ccagttcttc ttgggtagcc agtccttcgc cacgtatggt
      781 catcaggatc tgctcgatgg ggtcgcgttg cttgtactct tccacttctt ccttggtacg
      841 gtatttctgc ggatcgctga tggagtgccc tttgtagcga taggtcttca tttcgagcaa
      901 ggtggggcca ccgccttcac gggcacgctt cacggctctt tccaccgctt cgtgtaccgc
      961 ttcgggatgc atgccgtcca cctcgtcgcc gggcatatcg taagcatcgg ccagggtgta
     1021 aatgtcacgc acattggaag tacgttcaac tgaagtaccc atggcgtagt tgttgttttc
     1081 gcaaatgaag atcaccggta atttccaggt catggccatg ttgaacactt cgtgcaacat
     1141 gccctggcgg gcagcgccat cgccgaagaa agtgagacac acattgtcgg tgcctttgta
     1201 ttgctcggca aatgccagtc cggccccggt gccaatttga gcacccacga tgccgtggcc
     1261 accaaagaaa aagttttcga caccaaagaa gtgcatgcta ccgcctttgc ccttggcata
     1321 acctgtcgcc ttgccataca gttcggccat acagctctgc gggctgatgc ctttggcaat
     1381 ggccaggcca tggtctcggt aaccggtcac ataaggatct tccaaacgtg tggcggtcat
     1441 gcaaccggcg gcaatggctt cctgccctac ataggcgtga aaaaagccac ggatcttgcc
     1501 ggccattttg tacatctc
//
LOCUS       DATIQF010000117         1516 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_230011,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000117 DATIQF010000000
VERSION     DATIQF010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230011"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1109)
                     /gene="ligA"
                     /locus_tag="VLL95_01830"
     CDS             complement(<1..1109)
                     /gene="ligA"
                     /locus_tag="VLL95_01830"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF005932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HSR37626.1"
                     /translation="MKHSWNAVTYWQQKTEAWLKDDQAVNRPEALEDLRNVLRFHEHR
                     YYVLDDTLIADKQYDTLYKKLEQTEATHPEWITPDSPTQRVGSSLNAGFETVAHLVPM
                     LSLENSYDETDLQDWDRKARELTGLSQIEYCVEPKFDGASISLLYENGHLVRSATRGD
                     GVQGDDITTNSKRIRNIPLSAPFDKYGIGTIEIRGEVLLSKKHFRAFNDKLAEEGIPP
                     LANPRNAASGSLRMKDPAEVGRRNLEAFLYHVSYTTPTAVHGHGQPLPQTHGDMLEML
                     WECGFRSPVKEMQVVKGIEKVIEICRSYELKRDDLPYEIDGMVIKVNDLALQEKMGMT
                     THHPRWAIAFKFKARQATSKLRSVEFQVGRTGAVTP"
     gene            1314..>1516
                     /locus_tag="VLL95_01835"
     CDS             1314..>1516
                     /locus_tag="VLL95_01835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37627.1"
                     /translation="MKSAKNQAVAEKTPLLKDADKLVQQYPCVPLTVDCVIFGFEENK
                     LKVLLIRSDLEVYKGKWSLLGDVV"
BASE COUNT          308 a          361 c          417 g          430 t
ORIGIN      
        1 ggggtaaccg cgccggtacg ccccacctgg aactccacgc tgcgcagttt gctggtggcc
       61 tgcctggctt tgaacttgaa cgcaatggcc cagcggggat ggtgggtcgt cattcccatt
      121 ttttcctgca gggcaaggtc gttcaccttt atcaccatgc catcgatttc atagggaagg
      181 tcatcccttt ttagttcgta cgaccggcat atttcaatga ctttttcaat gccttttacc
      241 acctgcattt ccttcacggg gctgcgaaag ccgcattccc aaagcatttc gagcatgtca
      301 ccatgcgttt ggggcagggg ctggccgtgg ccatgtacgg ctgttggggt ggtatagcta
      361 acgtggtata gaaaagcttc gaggttgcgc ctgcctactt ctgcagggtc cttcatgcgc
      421 aaagacccgg aggccgcatt gcggggattg gctagtgggg ggatcccctc ttccgccaat
      481 ttatcattga acgctcgaaa atgttttttg ctcaacagca cttcgcccct gatctctatg
      541 gtgccgatac catatttgtc aaaaggggct gacaacggga tattcctgat gcgtttgctg
      601 ttggtggtaa tgtcatcccc ctgcacgcca tcgcctcgtg tggcgctgcg caccaaatga
      661 ccattttcat acaggagcga aatgctggcg ccatcaaatt tgggttccac acaatattca
      721 atttgcgaaa ggcctgtcag ttctcttgcc ttgcgatccc agtcttgcag gtcggtttca
      781 tcatagctgt tttccaggct cagcatgggc acaaggtggg ccaccgtttc aaagcctgca
      841 ttgagtgaac tgcccacccg ctgggtagga gagtctggtg ttatccattc ggggtgggtg
      901 gcttcggttt gctccagttt tttgtacagg gtatcgtact gcttgtcggc aatgagggta
      961 tcgtcgagta cataatagcg gtgttcatga aaccggagta cgttgcgcaa gtcttcgagt
     1021 gcttcaggcc ggtttacggc ctggtcgtct ttcagccagg cttctgtttt ttgctgccaa
     1081 taggtcactg cattccacga gtgtttcatt gcgggccatg tttgatgagg gggtgtcaaa
     1141 gctaactgcc attggcattg tttggcaggt tgggcaacag gcattttttg agcggtgctg
     1201 cagtttgcac ctgcaccagg aaatggggta gcggggtgtt gttaaatgta atttgtacac
     1261 attcacttag atttgctcca acgttttctc ccttttgacg atcaagattt gctatgaaaa
     1321 gtgccaaaaa ccaagctgtt gcagaaaaga ccccgcttct taaggatgct gacaaactgg
     1381 tgcagcagta tccctgtgtg ccgttaacag tggactgtgt gatttttggt tttgaagaaa
     1441 acaaactcaa ggttttgctc atcaggagcg atttggaggt gtacaaaggg aaatggtcgc
     1501 tgctgggcga tgtggt
//
LOCUS       DATIQF010000118         1828 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_245222,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000118 DATIQF010000000
VERSION     DATIQF010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1828
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245222"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            50..553
                     /locus_tag="VLL95_01840"
     CDS             50..553
                     /locus_tag="VLL95_01840"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSR37628.1"
                     /translation="MDEAYLDFTPQASLSSLIHDHPNMIIAKTFSKMYGLAGARIGYA
                     IAAAPTIASVSRLQSSPNEGVSVLSRLAALASLKDQQFVADYTAKNEAARKYTISELE
                     KLRFHCIPSHTNFIYFSLAGYQKDYFRQLKDHQIEGTGIYEEDGKWTRITVGTMDEMK
                     TFIKALQ"
     gene            719..1462
                     /locus_tag="VLL95_01845"
     CDS             719..1462
                     /locus_tag="VLL95_01845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37629.1"
                     /translation="MEVHHHAHHDHGKRNWKSYFWEFLMLFLAVFCGFLAEYQLEQTI
                     ERHREKEFILSMIEDAATDTANIHDAIAFNEVRIQHADTLARASLHFKGTQAEQTSIY
                     MANRRTVYYPDLIYPTDRTLFQLKNSGGMRLIKNKQAVESIIAYDNSGKRVVNQQAYY
                     EHHLTALTNASSRLMNFAELLVYEQPKGKKMYENAKLVNPSPEKLLELGNNAMMFQGV
                     MMQYIVRLQEMEKDAVQLMNTLRKEYGLK"
BASE COUNT          574 a          438 c          372 g          444 t
ORIGIN      
        1 aggctagttg cattactttt aataccccgc cctagccagc agcatcctgg tggacgaagc
       61 ctatctcgat tttaccccac aagcttcgct cagcagcctc attcatgatc accccaacat
      121 gatcattgcc aaaaccttct cgaaaatgta cggactggcg ggggctcgca tcgggtatgc
      181 cattgccgcc gcacccacca ttgcctcagt tagcagatta cagtcgtcgc ccaatgaagg
      241 cgtaagcgta ctatcccgac tggccgcttt ggcttctttg aaagaccaac aatttgtggc
      301 tgactacacg gcaaaaaatg aagccgccag aaaatacacc atcagtgaac tggaaaagtt
      361 gcgtttccac tgcatccctt cgcataccaa ctttatttat ttctcgctgg ccggctacca
      421 aaaagattat ttccggcaat tgaaagacca tcaaattgaa ggcaccggca tttatgaaga
      481 agatggcaaa tggacgagga tcacagtggg aacgatggat gaaatgaaaa catttataaa
      541 ggcgctgcaa taatctcaag ccgtaaacct ccaacaacct tatatggaag aaaatgcctc
      601 cagggagcat ttggaaaatc ctgctgattc ccctccggat ttttcaacaa ccgaaccgga
      661 aacctcagat tcagcaccag caaacgaacc cgctctcccc catcaatcat cagaaaacat
      721 ggaagtacat catcatgccc atcacgatca tggcaaacgc aactggaaat cttatttctg
      781 ggaattttta atgctgttcc tcgccgtgtt ttgcggtttc ttggcagagt atcagctgga
      841 gcaaaccatt gaacgacaca gggaaaaaga attcatcctg tcgatgattg aagatgccgc
      901 caccgataca gcaaatattc atgatgccat tgcattcaac gaagtaagga tacagcatgc
      961 agacaccctg gcaagagcaa gcttgcattt taagggaacc caggccgagc aaacgagcat
     1021 ctacatggcc aacagaagaa ccgtatacta ccctgatttg atttatccta ctgacagaac
     1081 attgtttcag ctcaagaata gcggtggcat gcggctcatc aaaaacaagc aggctgttga
     1141 aagtattatt gcctacgaca acagtggaaa acgggtagta aaccagcaag cctattacga
     1201 gcatcacctc actgcgctta ccaatgcttc ttcgcgactt atgaatttcg ctgagttgct
     1261 ggtgtacgag cagcccaaag gaaaaaaaat gtatgagaac gccaaattgg tgaatccgtc
     1321 tccggaaaaa ctactggaac tcggcaataa tgccatgatg tttcaaggcg ttatgatgca
     1381 atacatcgtt cgcttgcagg aaatggaaaa ggatgcagtg caacttatga atacacttcg
     1441 taaggaatat ggtctgaaat aaatcagaac ctttgagaca ctttgattct tcattaagta
     1501 caaatggatg acagtcgatt gcactccaat catgctgatg cagcaatgta actgagcccc
     1561 atcctgttca ggtatattca gcacaaggta tgtgcacgca ttttcatatt aatgcccatt
     1621 tcaaaaaaac caggcattgc aaactttttc tgttaagtat gacatatgca caaacgtcaa
     1681 ctccacaata atcaataccc gaaaatggtt atgaatcaat cctgcctgta caatcggtat
     1741 tattctctac caaatagtat ttcgctgaaa aacccggcac tatgaatagg caatgctgga
     1801 atgagaagat ttgttaattg aaaattga
//
LOCUS       DATIQF010000119         1737 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_1927, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000119 DATIQF010000000
VERSION     DATIQF010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1927"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..623)
                     /locus_tag="VLL95_01850"
     CDS             complement(<1..623)
                     /locus_tag="VLL95_01850"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSR37630.1"
                     /translation="MLVTFGAMQQQPEWIDPLLSKLEIKALNEMQSAAFKAQETHHDI
                     MLLSATGSGKTLAFLLPLVPLLRTATTSSLALVIVPSRELALQIETVFKSMGLGVKAT
                     CCYGGHKVEIEENNLRQPPALLIGTPGRLADHIRRGNITTTSIQTLVLDEFDKSLELG
                     FQEEMAFIIGSLPNLSRRILTSATSIDKVPDFVGLQDPQILDFVSNS"
     gene            767..>1737
                     /locus_tag="VLL95_01855"
     CDS             767..>1737
                     /locus_tag="VLL95_01855"
                     /inference="COORDINATES: protein motif:HMM:NF025714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4403 family protein"
                     /protein_id="HSR37631.1"
                     /translation="MRKFLWFLLGFLIILAFVLWWYLRQHEQKKLDIPVAKQDTVPVQ
                     VPGSTFHLPVSYALADLQQFLNQKIAGKFLETTLSPTGNEKDQVKLEMARVGTIGLSA
                     QGQQLVIQFPLQVKASIIQSRLRFITKGIKPVVTQVTLTLKTPVSLNAGWRLVTKFDL
                     SEVKWIQPPEVMLAGIKIDLTKKCDEAIQKNKKQLTTLLDTEINKAVSLREPVGKIWE
                     DLQKPIVIAKKPAPVYLRFICQEIAGDFALNAKELVCATTIKAIVAMIARTDANIPVL
                     PLPSFKKQKPASPISDAYVYAFVGFDILNREVSKALQGKSIAAKGLST"
BASE COUNT          459 a          410 c          427 g          441 t
ORIGIN      
        1 tcgctgttcg atacaaagtc caggatctgc gggtcctgaa gtccgacaaa atccggcacc
       61 ttgtcaatgc ttgtcgccga tgtcagtatt cgccgggaaa gattgggcag cgatccaatg
      121 ataaaagcca tttcctcttg aaaaccgagc tccagcgatt tgtcgaattc atcgagtacg
      181 agggtttgta tgctcgtggt agtgatattg ccacgcctga tgtgatctgc caacctgccc
      241 ggggtaccaa tgagcagggc cggtggttgc cgcagattgt tttcttcaat ttccactttg
      301 tggccgccat aacagcaggt ggcttttacg cccagcccca tgcttttgaa taccgtttca
      361 atttggaggg ccaactcccg gctgggtaca atcaccaggg ctagcgagga agtagtagcg
      421 gtgcgcaata atggcaccag tggcagcaga aaggccagcg ttttgcccga gccagtggcg
      481 gacaacagca tgatgtcatg atgcgtttcc tgggctttga acgcagctga ctgcatttcg
      541 ttcaaggcct ttatttccaa ttttgataac aggggatcaa tccactccgg ttgttgctgc
      601 atagcgccga aggtaaccaa caattcgtcc cccgtggctt gaatggtatg gccccgccgt
      661 ctctctggtc tttatgatgc cctttatcta aagatttctt ttgaaggtgc taattatcag
      721 tcagcacatc ttatttcaga ttgtagattt gaatacaact ccttgcatgc gcaaatttct
      781 ttggttcttg ttgggattcc tcatcatttt ggcgttcgtg ctttggtggt atttgcgcca
      841 gcacgagcaa aaaaagttgg atatacccgt ggcgaagcag gatacggttc cggtacaagt
      901 gcctggctct actttccacc tgccggtcag ttatgcgctg gcagatttgc agcaattcct
      961 gaatcaaaaa atcgccggaa aatttctgga aaccacactc agccctacag gcaatgaaaa
     1021 agaccaggtg aaattggaaa tggcaagggt aggtaccatt ggattatcgg cgcaaggaca
     1081 acagttggtc atccaattcc cattgcaggt aaaagcaagc atcatccagt caaggttgcg
     1141 atttattacc aaaggcatca agccggtagt cacgcaggtc acactcacct tgaagacccc
     1201 agtttcattg aatgctggct ggcgcctggt cacaaaattt gatctgtctg aggtgaaatg
     1261 gattcaaccg ccggaagtaa tgctggcagg aataaagatt gaccttacga agaaatgtga
     1321 cgaagcgatc cagaaaaaca agaagcagct gaccacactg ctggataccg aaatcaacaa
     1381 agcggtttca ttaagagaac cagtaggcaa aatatgggag gacctgcaga aaccaattgt
     1441 gattgcaaaa aagcctgcac cggtttacct gaggttcatt tgccaggaga ttgccggcga
     1501 ttttgctttg aatgctaaag aactggtatg cgctaccacc atcaaggcaa ttgttgccat
     1561 gattgccaga acagatgcca acattcctgt gctgccgctg ccatccttta aaaaacaaaa
     1621 accagcttcc ccaatttcgg atgcctatgt gtatgcattt gttggatttg atattctcaa
     1681 tcgcgaagtg agcaaagcgc tgcagggaaa atccattgcg gccaaaggat taagcac
//
LOCUS       DATIQF010000120         1785 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_245245,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000120 DATIQF010000000
VERSION     DATIQF010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1785
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245245"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(24..416)
                     /locus_tag="VLL95_01860"
     CDS             complement(24..416)
                     /locus_tag="VLL95_01860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37632.1"
                     /translation="MRKFVFFTTLVIIVAALALFWWRFYFVFGEGVKSGELNFVVRKG
                     YLFKTWEGRMIQTGYKSQVPGSIQSNEFDFSIVDETIAEKLKVSGGMIIEVGYKEHLG
                     ALPWRGNSKYVVDTIMAIKEKPGPASPY"
     gene            567..1703
                     /gene="bshA"
                     /locus_tag="VLL95_01865"
     CDS             567..1703
                     /gene="bshA"
                     /locus_tag="VLL95_01865"
                     /inference="COORDINATES: protein motif:HMM:TIGR03999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071793 - bacillithiol biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-alpha-D-glucosaminyl L-malate synthase
                     BshA"
                     /protein_id="HSR37633.1"
                     /translation="MRIGIVLYPTFGGSGVLATELGMALADKGHQVHFITYRQPVRLS
                     SFNANIFFHEVRINTYPLFEYPPYESALASTIVDVVLNQKLDLLHVHYAIPHALSAYI
                     ARKILEKNDGIRLPVITTLHGTDITLVGRDKTYEPVVTFSINESDAITAVSENLKEET
                     YKSFHIKKNIQVISNFVDVSRFSKKPIDAFRKAVAPNGERILIHASNFRKLKRVDDII
                     RIFAKVRQEVPAKLMMVGDGPERHMAEELSRELDVCNDVRFVGKQEQMEDIMVISDLF
                     LLTSEYESFGLSALEAMAASVPVLSSNAGGIPEINVHGVTGYMAPVGHIDEMADYAIS
                     MLKDNDTLAAFKKRAYEHACKFDIHQIVPQYEALYESVLAAELA"
BASE COUNT          474 a          469 c          419 g          423 t
ORIGIN      
        1 tgcacaagcg cccggctata tttttaatag ggtgatgccg ggcccggctt ttctttgatg
       61 gccatgatgg tatctaccac atatttgctg ttgccccgcc agggaagcgc acccaggtgt
      121 tccttgtagc ccacttcaat gatcatgcct ccgcttactt tcagcttttc ggcaatggtc
      181 tcgtccacaa tgctgaaatc aaattcattg ctctgaatcg atcccggcac ctgtgacttg
      241 tatcctgtct ggatcatgcg tccttcccat gtcttgaaga gatagccctt gcgcaccaca
      301 aaattcaact ccccagactt cacaccctcg ccaaatacaa aataaaaacg ccaccaaaaa
      361 agcgccaggg ctgccacaat gataacgagg gtggtaaaga atacaaactt gcgcatgagc
      421 ggaggatttg ctacgaatat aattcagtaa cttattggcc aaaaatttcg atgacaaccg
      481 gcccggcttt tccattcatg gattaggttg aaccttaaca cgaattcttc gttacttcac
      541 attataatca ttcctgataa ttcaacatga gaattggaat agtgctgtac cccacctttg
      601 gaggtagcgg cgtgcttgct acagaactgg gcatggccct ggccgacaag ggccaccagg
      661 tgcattttat tacctacagg caaccggtca ggctgagttc cttcaatgcc aatattttct
      721 ttcacgaggt acgcatcaac acctacccgt tgtttgaata cccgccatac gaatcggcgc
      781 tggcaagcac cattgtagac gtggtgctca accaaaagct cgacctgctg catgtgcact
      841 atgcgattcc ccatgcactg tcggcctata tcgcccggaa gatcctggag aagaacgacg
      901 gcatccgcct gccggtgatc accaccctgc atggcaccga tattacgctg gtaggccgcg
      961 acaaaaccta tgagccggtg gtcaccttca gcatcaacga gagtgatgcc attaccgccg
     1021 tatccgagaa cctgaaagag gaaacctaca agtcgttcca catcaagaaa aacattcagg
     1081 tcatttccaa cttcgtcgac gtgagccgtt tttccaaaaa gcctatcgat gcattccgca
     1141 aagcggtagc gcccaacggg gaacggatcc tgatccatgc ttccaacttc cgcaaactga
     1201 aacgggtgga tgacatcatc cgcatttttg cgaaagtgcg ccaggaagtg cctgccaaac
     1261 tgatgatggt gggcgatggc cccgaacgtc acatggcaga agaactgagc cgcgaattgg
     1321 atgtgtgcaa cgatgttcgc tttgtgggca agcaggagca aatggaagac atcatggtaa
     1381 tcagcgatct tttcctgctc acttcagaat acgagagctt tggattgagt gccctcgaag
     1441 ccatggcagc cagcgtgccg gtgctgagca gtaatgcagg tggcattccc gagataaacg
     1501 tgcacggcgt aacggggtac atggcaccgg tagggcatat tgatgaaatg gctgactatg
     1561 ccattagcat gctgaaggac aacgataccc tggcagcctt caaaaaaaga gcctacgaac
     1621 acgcctgcaa atttgatatc caccagatag taccgcaata cgaagctttg tatgaatcgg
     1681 tattggcggc agagttggct taatttttgt tcaatgagcc attaaataaa gtttcgaacc
     1741 ggcaaacttc cagttgactc caatcagctg gccaaatgct tatct
//
LOCUS       DATIQF010000121         4245 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_275642,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000121 DATIQF010000000
VERSION     DATIQF010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4245
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275642"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..525
                     /locus_tag="VLL95_01870"
     CDS             <1..525
                     /locus_tag="VLL95_01870"
                     /EC_number="2.3.1.275"
                     /inference="COORDINATES: protein motif:HMM:NF014690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043772 - acyl-phosphate
                     glycerol-3-phosphate acyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate acyltransferase"
                     /protein_id="HSR37634.1"
                     /translation="TNTVRVLGKGWGSFVMAVEILKGVLASFLYLLLPYYLTDEFHRT
                     NLMVGLGMAAVLGHIFPIWAGFKGGKGVATVFGMVLAIQPLVALAVVGIFLLVLFLTR
                     FVSLSSILASLALPILILVIFNEPEPLYRIFAIAVALLVILTHQKNIQRLLNGNESKA
                     RILKYRDRKRERRF"
     gene            642..1448
                     /locus_tag="VLL95_01875"
     CDS             642..1448
                     /locus_tag="VLL95_01875"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HSR37635.1"
                     /translation="MKEIVIVLAISMMAFACSQNKITDRRQLNIVSNDFMTNMADTQY
                     KSVISQGKVVNSGKDVSMVRNVAGNIAKAVEAYYKVNNMTDALKGYKWEFNLLESKQV
                     NAWCMPGGKIAVYTGLLPVTQDKHGLAVVLGHEIAHALAEHGKERFNQQLLAQGGALT
                     LQLFMAQKPAMTRDLFLQAFGVATELGVLLPFSRKQELEADKLGLMFAARAGYNPNAA
                     IGLWERMGKLSEGAQPPEFASTHPSEDSRIEALKKLMPEANKLYEASQKK"
     gene            1732..2046
                     /locus_tag="VLL95_01880"
     CDS             1732..2046
                     /locus_tag="VLL95_01880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37636.1"
                     /translation="MKSRRIDWALVFAVNENQLTNILKDVLPAMKEGGKLWVAYPKST
                     SKIVSDLNREGSWTCLTCKGFAGVEEVALDHVWSAIWWKIGGLEEAIEEVLEEELMLS
                     KG"
     gene            complement(2175..4091)
                     /locus_tag="VLL95_01885"
     CDS             complement(2175..4091)
                     /locus_tag="VLL95_01885"
                     /inference="COORDINATES: protein motif:HMM:TIGR00976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HSR37637.1"
                     /translation="MRFINLVLLAIVSKFALAQPFAAYSAFIVDNYVKWERMVPMRDG
                     TRLFTSIYVPKDSAVKHPILMTRTPYSSGPYGEGKFRAIWNTNHGLYAMKKYILVFQD
                     VRGRFMSEGTFEDVRPFNPNKQGHEYDEASDTYDAIEWLINNVPGNNRNVGVFGISYP
                     GFYSTMAALSGHPALKAVSPQAPVTDWFMGDDFHHNGAFMLIDAFEFYTGFGVPRPSP
                     VTRYNRGFERTEKDAYHFYLRTGALPNFNRQYLGDSILFWNTLMSQPVYNAWWQQRNT
                     RNHVANIKPAMLVVGGTFDAEDCFGAWNLYKAIEEKNNGGQHNKVVMGPWFHGAWGGR
                     STGEKLGDVKFGSTTSFWYQQYIEVPFFEHYLNNGPVAPISEATVFFTGENSWKQFDE
                     WPSKKVALTPIYFQPRGKLSFAKPKSLKAAQKPIEANSFTMYVSDPANPVPHEGSDTI
                     AERTREYMINDQRFASKRKDVITFKTDVLKDALTLAGPVYADLMVSIGSTDADFVVKI
                     IDEFPGNVSSAATGPDTLYRGDSKMNGFQMLVRGEVMRGKFRNSFETPEPFVPNKITQ
                     VKFYLPDVAHTFQKGHRMVIQVQSSWFPLVDRNPQVFTDIYKAQDGEFLKTEVRLFHA
                     DGVASKILLPVLKQ"
     gene            4102..4245
                     /locus_tag="VLL95_01890"
     CDS             4102..4245
                     /locus_tag="VLL95_01890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37638.1"
                     /translation="MKWAFNFGETTNKKTGQPGFVMIIYKMCQLPWSSFSSLMALASK
                     LAS"
BASE COUNT         1125 a          910 c         1028 g         1182 t
ORIGIN      
        1 accaatactg ttcgggtact cggaaaaggg tggggatctt ttgtaatggc ggttgagatt
       61 ctgaaaggag tgttggcttc gttcctttac ctcctgttgc cctattacct aacagatgag
      121 tttcatcgca ccaacctgat ggttggtttg ggaatggcgg ctgtactggg gcacatattt
      181 ccaatttggg ctggtttcaa aggcggcaaa ggagtggcca ctgtttttgg aatggtactg
      241 gccatacaac cattggtggc tcttgcagtg gttggtattt tcttgctggt tcttttcctg
      301 acacgatttg tttcacttag ttcaatcctt gccagtttgg ccttgcccat attgattctc
      361 gtaatattca atgaaccgga accgctctat cgcatctttg ccatcgcggt tgccttgctc
      421 gtcatactta cccatcagaa aaatattcag cgcttgctca atggaaacga gagcaaagca
      481 agaattctga agtacagaga ccgtaaaagg gagagaagat tctaatcctt tactcaatca
      541 ccgactgctt ttgatagaac ctgcgctatg tcgcaggttt tagtttttct gaaacaaatt
      601 gtggcacact tttcaggatt ataccatcga taatgcctct tatgaaagaa atagttattg
      661 tacttgccat ttccatgatg gcttttgcct gcagtcaaaa caaaatcact gacaggcggc
      721 aattgaacat tgtttcaaat gatttcatga cgaatatggc agatacgcag tataagtctg
      781 tcatcagtca aggcaaggtg gtgaactcgg gcaaggatgt gagtatggtg cgtaatgtag
      841 ctggtaacat tgcgaaggct gtggaggctt attacaaggt caataacatg actgatgcat
      901 taaaggggta caagtgggaa tttaacttgc tggaaagcaa gcaggtaaat gcctggtgca
      961 tgcctggtgg caagattgca gtatatacag ggttgttgcc ggtaacccag gacaaacatg
     1021 ggttagcggt ggtgctgggc catgaaatag cgcatgcact tgcagaacat ggcaaggaaa
     1081 gattcaatca gcagctattg gcgcagggcg gggcactcac gttgcagttg ttcatggcac
     1141 agaaaccagc aatgacgaga gatctcttct tgcaggcatt tggtgtcgct accgaactgg
     1201 gtgtgctgct gcctttcagt agaaagcagg agttggaagc cgataaattg ggtttgatgt
     1261 ttgcggccag ggcaggctac aatcctaatg cggccatagg tctttgggaa cggatgggta
     1321 aactgagcga aggcgcacag cctcctgaat ttgcaagcac acatcccagc gaagattcaa
     1381 ggattgaggc tttaaagaaa ctgatgccgg aggcaaataa actttacgaa gcctctcaaa
     1441 agaaatgagc cccggctcat tgattaatta ttttatcaat aagaaggcct gaatattatg
     1501 aaatgatttc aaaaaaggcc aaatcggaag gtaatgtttt ggatattttt tatacctttg
     1561 cccttccgta ttgttaacct ttttcaaaca gttttttgag tgatgtcgca gccaagtatt
     1621 gttgaaaaac tccgtttgac tgatgagaaa aatctcctga ttcaaggtct tccttcttcc
     1681 atcgaaaaac aatttgccaa gctttcgttc gcaaaaaatg taacaccctt attgaagtca
     1741 agaagaattg actgggcatt ggtgtttgca gtgaatgaaa accaattgac aaatattttg
     1801 aaggatgtat tgccggcaat gaaggaaggc ggcaaactgt gggtagcata tcccaaaagc
     1861 acttcaaaaa ttgtaagcga cctgaatagg gaagggagct ggacttgcct tacctgcaaa
     1921 ggttttgccg gtgtggaaga agtggcactg gatcatgttt ggagtgccat ctggtggaaa
     1981 atcggtggtt tggaagaagc cattgaagaa gtgttggaag aagaattaat gctgagcaaa
     2041 ggctaataaa tacattcaac ttattgtatg aaaaggtgat caagataatt gatcaccttt
     2101 tttaatgtaa cctactacaa aagtacttga tcatttttgc ctcgattcac gaccattatc
     2161 ctgcataaag ggcttcactg cttcaacaca gggaggagaa tcttgctggc tacgccatct
     2221 gcatgaaaca aacgcacttc tgtttttaga aactcgccgt cttgagcttt gtaaatatcc
     2281 gtgaagacct ggggatttct gtcgaccagg ggaaaccaac tactctgtac ctgtatcacc
     2341 atccggtgtc ctttctgaaa agtatgtgcc acatcgggca agtagaattt cacttgagtg
     2401 atcttgttag gtacaaatgg ctcaggtgtt tcaaaactgt ttctgaattt tcccctcatc
     2461 acttcacctc tcactaacat ttgaaagcca ttcatttttg aatcacccct gtaaagtgtg
     2521 tcgggacctg ttgcggccga actcacattg cccggaaatt catcgatgat cttcaccacg
     2581 aagtcagcat cggttgaacc tatgcttacc ataaggtcgg catacactgg tcctgcaagg
     2641 gtgagtgcat ctttaagcac atcggttttg aaagtaatca catcttttcg cttgctggca
     2701 aatcgctggt cattgatcat gtattccctt gttcgctccg cgatggtgtc agatccttcg
     2761 tgaggcacgg gattggccgg gtcgcttaca tacatcgtaa atgaattggc ttcaatgggc
     2821 ttttgtgcgg ccttcagcga tttaggtttt gcaaacgata gctttccacg gggttgaaaa
     2881 taaatggggg taagagccac cttttttgag ggccattcat caaactgttt ccaactgttt
     2941 tcgcctgtaa aaaagaccgt tgcttcgcta atgggagcaa ctgggccatt gttcaggtaa
     3001 tgctcaaaaa aaggcacttc aatgtattgt tgataccaga aagaagtagt gctgccaaat
     3061 ttcacatcac ccagcttttc tccggtactg cggccacccc aggcgccatg aaaccatggg
     3121 cccattacca ccttgttgtg ctgccccccg ttgtttttct cttcaattgc cttgtacaaa
     3181 ttccaggcgc caaagcagtc ttctgcatcg aaggtgccac ccaccaccag catggctggc
     3241 tttatgttgg ccacatggtt cctggtgttg cgttgctgcc accaggcatt ataaaccggt
     3301 tgactcatca gcgtgttcca gaaaaggata ctgtctccaa ggtattgccg gttgaaattg
     3361 gggagggcgc cggtacgcag gtaaaaatgg taggcatctt tttctgtgcg ttcaaatccg
     3421 cggttataac gggtaacggg cgaggggcga ggtactccaa atcctgtata aaattcaaag
     3481 gcatctatca gcataaatgc accgttgtgg tggaagtcgt cgcccataaa ccaatcggtc
     3541 actggtgcct gtggcgaaac tgctttcaag gccgggtggc cactcaaggc cgccatggta
     3601 ctgtaaaaac cggggtaaga gatgccgaat acacccacgt tgcggttgtt gccgggtaca
     3661 ttgttgatga gccattcgat ggcatcatag gtgtcggatg cttcatcgta ttcatgaccc
     3721 tgtttgttgg gattaaatgg tcgcacatcc tcaaaagtgc cttcactcat gaaccttccc
     3781 ctgacatcct ggaacacgag gatatacttt ttcatggcat ataatccatg attggtattc
     3841 catattgccc gaaactttcc ttcgccatag ggaccactgc tgtaaggtgt tcttgtcatc
     3901 aggatagggt gcttcactgc tgagtccttg ggcacataaa tggaagtgaa aagcctggtg
     3961 ccatcccgca tggggaccat cctttcccac tttacgtaat tgtctacaat aaatgctgag
     4021 taggcggcaa agggttgggc caaggcaaac tttgaaacga tggccagcag gactaaattg
     4081 atgaatcgca taccggaatt tatgaaatgg gctttcaatt tcggtgaaac caccaataaa
     4141 aaaaccgggc aacccggttt tgtgatgatc atttacaaga tgtgccaatt gccctggtcc
     4201 agcttcagca gtttgatggc gctggcttca aaactggctt cataa
//
LOCUS       DATIQF010000122         5111 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_93184, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000122 DATIQF010000000
VERSION     DATIQF010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5111
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93184"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1123)
                     /locus_tag="VLL95_01895"
     CDS             complement(<1..1123)
                     /locus_tag="VLL95_01895"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSR37639.1"
                     /translation="MKKMLWLSLLAAMNVPAAAGPGKEKAEKVEPAVIDKIRDEGLNR
                     SQVMKTAWHLTDVSGPRLTVSPGYKQAANWAISELKKYGLQNARLEPWGEFGKGWVQE
                     KCYVAMRAPYYNPLIAIPKVWTSSTPGSGLFTSEVVLVEATDTTTFLSKYKGQLKGKI
                     VMMANRDTLRPSFRGDGSRFTDEELDKMAKAAPQQPGAQQGNRGGGRGGAFAEMRRVG
                     EMLNAEEPALILSMTANGNDGTIFVQGGGSYAKDSKPAPASVVISSDEYLRMQRLIQN
                     GIPVKVEAEIRTRFLTDDMNGYNVIAEIPGTDLKEEVVMLGAHLDSWQGSTGATDNAA
                     GSAVMIEAVRIIQTLGVKPRRTIRIALWSGEEQGLHGSRN"
     gene            1254..1904
                     /locus_tag="VLL95_01900"
     CDS             1254..1904
                     /locus_tag="VLL95_01900"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HSR37640.1"
                     /translation="MPVKDYYKILGVEPGATEQEIKKGFRHLAKRFHPDTNQGNKYSD
                     AWFRELQEAYDTLTDPAKKEAYLQERWLAKSQGRSMARPVPLTPETIVMEARELATQV
                     AQIDHFRMDHEKLAANLLELLNEERMDVLLAYNETSANRQVTSLLLNASSPVVYPLLA
                     PLYKRLFHLCRNDAAYAGLIKKEQQKRHREYWWSRHQWWVMLLATLLLCSVVYWLA"
     gene            1917..2231
                     /locus_tag="VLL95_01905"
     CDS             1917..2231
                     /locus_tag="VLL95_01905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37641.1"
                     /translation="MHRIYWTGYCLGERMSVIQQVENVIQPFGFITDFKRFSDVALTL
                     IIELPAGHLEQLYLELTAIMEMKEWKPGEDTTAKHCEIALEINFGSASGQLTIDTPAV
                     PG"
     gene            complement(2352..3113)
                     /locus_tag="VLL95_01910"
     CDS             complement(2352..3113)
                     /locus_tag="VLL95_01910"
                     /inference="COORDINATES: protein motif:HMM:NF024946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HSR37642.1"
                     /translation="MKRIFIAAFSMLIASAASAQADSAALEKLRRESGVDPTRVQSRA
                     GYSLLYQDQPGTKATITNRLSLNLGVGRWALQVRTEAVTRTPEVPGQGFQSGFGDLRF
                     NVLNAFFVKGKHALAANAEFYVPTGGTRYGVGYFSVTPAITYSYTIKPSLVLAVQPQY
                     TFDISRDPLYPALSVITIRSFLAKFTESGYFFVIEPRPSFDLENHKNDFVLSPIVGKA
                     LGAGFNLIFLAEIAFTENRRNTWGHVYQIGFNKNF"
     gene            complement(3251..4219)
                     /locus_tag="VLL95_01915"
     CDS             complement(3251..4219)
                     /locus_tag="VLL95_01915"
                     /inference="COORDINATES: protein motif:HMM:NF024946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HSR37643.1"
                     /translation="MKILRKILFRGLLPMLLMILVQPTAKAQGHYAGSSFNPNDYFIP
                     PVSGWVFALYYSYTNMNYYNGAGKKADVIQLSQNPPLNIAVGQQAVTHSAIPMFIRFG
                     KGKILNANWGYLVLPMFNNPNANMALDYYLGQTNVGSQSMKFNSFGLGDMYIQPVWLT
                     WEKKKLSTTFSYGVWLPVGKYEPNSTDNIGMGYWSHNFRVANRYKPSAQYSIMGALTL
                     EVNSQQKGNDFKEAPHLAFDFGGSYSFPKGHEIGLMGYGQWQLGEDQGSKATLPQDRI
                     YSLGTYGAYWIKPGKLSVLGRFNYNFGARNRFAGLSFQLGINFLLM"
     gene            complement(4454..>5111)
                     /locus_tag="VLL95_01920"
     CDS             complement(4454..>5111)
                     /locus_tag="VLL95_01920"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HSR37644.1"
                     /translation="LKKLEELGLAKNTIVVFTTDNGAMVDWFPDAGTTPFRGEKATTW
                     EGGVRVPLLVRWPASIPAGKKSNGIQDHCDLFSTLAAAAGVADAPGKLKTSHKVYIDG
                     VDNLKHWTGNAPSARTFEIYYNENDLTAVRIGNWKSHMQVREGFFDYNRPSALLINLR
                     MDPFERHTEWKSREVAMRMGIAWGGQIQDLMSAHYKTLADFPPRQKGGSLLVTPKNNP
                     "
BASE COUNT         1238 a         1333 c         1248 g         1292 t
ORIGIN      
        1 agttgcggct gccatgcagg ccctgttctt ccccactcca taatgcgatg cgaatggtgc
       61 gtcgtggctt cacacccagg gtttgaatga tgcgtaccgc ttcgatcata acggcactgc
      121 cggcggcatt gtcggtagca ccggtgctgc cctgccagct gtcgaggtgg gcgcccagca
      181 tcaccacttc ttctttcaga tcggtacccg gtatttcagc gatcacgttg tacccattca
      241 tatcatcggt caggaaacgg gtgcggatct ccgcttccac ttttaccggt atgccatttt
      301 gtatgaggcg ctgcatgcgc aggtattcat cgctgctgat gaccacgctg gccggcgccg
      361 gtttgctgtc tttggcatag ctgccgccac cttgcacaaa aatggttcca tcattgccgt
      421 tggccgtcat gctcagtatg agtgctggtt cttccgcatt gagcatttct ccgacccggc
      481 gcatttcggc aaaggcacca ccgcgaccac caccgcggtt gccttgctgc gcccccggct
      541 gctgtggtgc agctttggcc atcttgtcga gctcttcatc agtaaatcgg ctgccgtccc
      601 ctctgaacga aggacgcaac gtatcgcggt tggccatcat cacaattttg cctttcagct
      661 ggcctttgta tttgctgaga aaagtggtcg tgtcagtggc ttccaccagc actacttcgg
      721 aagtgaataa accactgccg ggcgtgctgc tggtccaaac tttggggatg gcgataaggg
      781 ggttgtaata aggagcccgc atggctacat agcacttttc ctgtacccag cctttcccaa
      841 attcacccca tggctccaac ctggcatttt gcaagccata ttttttcaac tcgctgatgg
      901 cccaattggc tgcctgcttg tagccgggag aaactgtcag cctgggacca ctcacatcgg
      961 tgagatgcca tgccgttttc atcacctggc tgcggttcaa gccctcgtca cggatcttgt
     1021 caatgaccgc cggctccacc ttctctgctt tttccttacc cggaccagct gcggccggaa
     1081 cattcatggc agccagcagg ctcaaccaaa gcattttttt cataacagtt gtttttcgta
     1141 aatggaatga tttcttggac gccgttttga attcaatcat ctgcttttgt accgcagaaa
     1201 cattccaaga taagcaaact gcacccgctt tccgactcct acatttgcaa tccatgccgg
     1261 taaaagacta ttacaaaata ctgggcgtag aacctggcgc cacggagcag gaaatcaaaa
     1321 aagggtttcg ccacctggcc aagcgcttcc accccgacac gaaccagggc aataaataca
     1381 gcgatgcgtg gttccgcgaa ctgcaggaag cctatgacac gctgaccgac ccggcaaaaa
     1441 aagaagccta cctgcaggag cgatggctgg ccaaaagcca gggcaggtcg atggcaaggc
     1501 ccgtgccgct gacacctgaa accattgtaa tggaagcccg tgaactggcc acacaggtgg
     1561 cgcagatcga tcacttccgc atggaccatg aaaaactagc ggccaacctg ctggaattgc
     1621 tgaatgaaga aagaatggat gtgctgctgg cctacaatga aacatcggcc aaccgccagg
     1681 tgacaagcct cctgctgaat gcctcttcac cggtggtgta ccccttgctg gcccctttgt
     1741 acaaaaggct attccacctt tgccgcaacg atgcagccta tgcaggtctt atcaaaaaag
     1801 aacaacaaaa acgacaccgc gaatactggt ggagccgcca ccaatggtgg gtaatgctgc
     1861 tggctacgct gttgctgtgt agcgtcgtat attggttggc ataaagggtt gacaacatgc
     1921 atcgcattta ttggaccgga tattgtttgg gggaaagaat gtccgtgatc cagcaggttg
     1981 aaaacgtcat tcaaccattc ggctttatca ctgacttcaa gagattttct gatgtcgccc
     2041 tgacactgat cattgaatta ccagccgggc atcttgaaca actttacctg gaattgactg
     2101 ccattatgga aatgaaagag tggaaacccg gtgaagacac aacagcaaag cactgcgaaa
     2161 ttgcactcga aataaatttt ggctccgcat caggccaatt gactattgac acacctgcag
     2221 taccaggctg aaaagatttc gatttcctct aatgcaggtt acaatcattt gaaaagttga
     2281 ttgttctaaa aatcttgcca gcgtttatga ttgtttgaaa aggtttgaaa tcattttcaa
     2341 tgcctgcctg cttagaaatt cttattgaag ccaatttggt aaacatgccc ccaggtattc
     2401 ctgcggtttt ccgtaaatgc tatttccgcc aaaaaaatca ggttgaagcc cgcccccaat
     2461 gctttaccta caatgggtga aagcacgaaa tcgtttttgt gattttccaa atcgaaactg
     2521 gggcgaggtt caattacaaa aaagtaaccg gattcagtga acttggccag gaaactgcga
     2581 atggtgatca cactgagcgc tggatacaat ggatcccggg aaatatcgaa cgtgtattgt
     2641 ggctgcacgg ctaataccag tgatggcttg atggtatacg aataggtgat ggccggtgtg
     2701 acgctgaaat atccaacgcc ataacgggtt ccaccggtgg gcacataaaa ctcagcattg
     2761 gcagccagtg catgtttgcc ttttacaaag aatgcgttga gcacattgaa ccggaggtca
     2821 ccaaaaccgc tctgaaagcc ttgtcccggc acttcgggtg tacgcgttac tgcttcggtc
     2881 cgcacctgga gcgcccaacg gcccacccct aaattgagag atagcctgtt ggtaatggtt
     2941 gcctttgtac caggctgatc ctggtaaagc agcgaatatc cagctctcga ttgcacccgg
     3001 gtgggatcga ctccgctttc tcgccgtagt ttttcaagcg ccgcagaatc ggcctgggct
     3061 gaagccgcag aagcgatcag catggaaaat gcagcgatga atatccgttt catttttgga
     3121 gaggatgatg aatgagtcaa tttgcagacg gcaatcacgg ttttgaataa tggttatcag
     3181 ggccttgttt aacagtgcat gactcactgg ttataaatgg cccggaacaa atcgcaatga
     3241 atcaatttgg ctacatcaaa aggaagttga tgcccaattg aaagctcaat ccggcaaacc
     3301 tgttcctggc gccaaaattg taattgaacc ttcccagcac gctcaatttt cccggcttga
     3361 tccagtaggc cccgtaagtc cccaatgaat agatcctgtc ttgcggcaag gttgcctttg
     3421 aaccctgatc ttctcccaat tgccattgac catatcccat caaacctatt tcatgccctt
     3481 tgggaaagga ataggaaccg ccgaagtcga atgccagatg gggtgcttcc ttgaagtcat
     3541 tgcctttttg ctggctgttc acttccagtg tgagtgcacc cattatgctg tactgcgccg
     3601 atggcttgta acgattcgcc acccggaaat tgtgcgacca ataccccatg ccaatgttgt
     3661 cggtgctgtt cggttcatac ttacccaccg gcagccacac accgtaagaa aatgtagtag
     3721 agagtttttt cttttcccag gtgagccaaa cgggctgtat atacatatcg cccagcccga
     3781 aagaattaaa cttcatggat tggctcccca cattagtttg gccgaggtag taatcgaggg
     3841 ccatgttggc attggggttg ttgaacatgg gaagcacgag gtaaccccag tttgcattca
     3901 ggatctttcc ttttccaaaa cgaatgaaca tgggaatggc agaatgagtg accgcttgct
     3961 ggcctacagc aatattcaat ggaggattct ggctcagttg aatcacatcc gccttcttgc
     4021 ccgcaccgtt gtaataattc atattggtgt aggaataata gagcgcaaac acccaaccgg
     4081 aaacgggggg aataaaataa tcgttggggt tgaaactgct gccagcatag tggccctggg
     4141 ctttcgcagt gggctgcacc aaaatcatca gcaacattgg aagcaagccc ctgaacaaaa
     4201 tttttcgcag aattttcatc gcaataattg ttttgaaatg ataaatgggg cagggttgat
     4261 cttccttcca gtgctgaatg gatttgcatg ccgaatgctt gtgtctgtct ggcatcaacc
     4321 acaggtcatg caactgaatg tgctaagaat tgaagcggta agagcagcat gatcttcttc
     4381 tgaaaaacat gctgctcttt gaaacctgct gaatgccggc gattccagtt cgagcatcgc
     4441 catctacctg atattatgga ttgttctttg gcgtcaccag caagcttccc cccttttgtc
     4501 ttggcggaaa atctgccagt gttttatagt gcgccgacat gaggtcctgt atttgtccgc
     4561 cccaggctat gcccatgcgc atggccactt ccctgctttt ccattcggta tgtcgctcaa
     4621 aaggatccat ccgcaggttg atgagcaaag cactcggccg attgtaatcg aagaagcctt
     4681 cccttacctg catgtgcgat ttccagttcc ctatccgcac tgccgtgagg tcattttcgt
     4741 tgtagtaaat ctcaaacgta cgggccgagg gggcattccc tgtccagtgc ttcaggttgt
     4801 ctaccccatc tatgtacacc ttgtgcgaag tcttgagttt gccgggcgca tcagccacac
     4861 cggctgcggc ggccagggta gagaaaagat cgcagtggtc ctgtatgcca ttcgactttt
     4921 tgcctgcggg gatgctggcc ggccagcgca ccagcagggg cacccttaca ccaccttccc
     4981 aggtagtggc tttttcacca cgaaaagggg tggtaccagc atcgggaaac caatcgacca
     5041 tggccccgtt atcggtagtg aacaccacga tggtattctt cgccaatccc aattcttcca
     5101 gctttttcag c
//
LOCUS       DATIQF010000123         2343 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_93185, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000123 DATIQF010000000
VERSION     DATIQF010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93185"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            209..955
                     /locus_tag="VLL95_01925"
     CDS             209..955
                     /locus_tag="VLL95_01925"
                     /inference="COORDINATES: protein motif:HMM:NF013793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HSR37645.1"
                     /translation="MTTIALYNIKGGVGKTAGCVNLAYLASEEGKQVLLWDLDPQGSA
                     SFYFKIDPHLKGGAKKLLGGDAATFEANIQPTEYDNLSLLPADFSNRHLDVIIEETKQ
                     AKKKLKSLLASLQGSYDYLFIDCPPGIGPLSEAIFAAADFVVLPTIPTTLSIRTYEMV
                     HQFFESNKLDENRIIPYFSMVDIRKNLHNETLGKYYKNKQFLKNYIPYLSTVEKMGNH
                     LAPVAHFAASSYAAQCYRDVWKELKKKIGA"
     gene            complement(1020..1964)
                     /locus_tag="VLL95_01930"
     CDS             complement(1020..1964)
                     /locus_tag="VLL95_01930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37646.1"
                     /translation="MKNPASFILLSVCAILFSMGLYAQSSLKEWADGNVLKNAEFRPK
                     PKFYKADFINVDEDGHGKTPYFPALKIKKIAIICFAVQDDQQFKQSGNKYFRVTETRW
                     TSDNAVKHITETSFPMAVNALKAFGSQNNIEFVTLSELIKSNPQLESVYNNYQLEASW
                     LGNALLVNNIDGSIFTADGTRYINAASAYPDYKFGNSLGLMAKALGVDAVMVIQNEIF
                     SSKEGIAFSKLSLHLLGPNPIPKKDKKYAGFNGAGYNEAMYYLGTEFISKDGAIVIKT
                     DKKGKWEGEDFSGYETLVSKNIQNIFDRMKEVTEQLTK"
     gene            2093..>2343
                     /locus_tag="VLL95_01935"
     CDS             2093..>2343
                     /locus_tag="VLL95_01935"
                     /inference="COORDINATES: protein motif:HMM:NF019135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HSR37647.1"
                     /translation="MARRLFTYLLLLVLPCCTGFISMAQLFVFRQLTTADGLPSNFVN
                     GLQQDTKGNMWFATDKGAAAYNGQSWLTLTTDDGLPSNMV"
BASE COUNT          619 a          592 c          519 g          613 t
ORIGIN      
        1 tataaaagcc gcagcgaatg gtacgaaacc gatgcgccgg ccattgccag cagcaacagc
       61 aaagaccgca ccaccaccac ctacctgatg aaccgcctgg cctttcggtt gggctggaaa
      121 ttctgaacac cgctgacggc ccgcacttgc cagaaaatgc ccctacccaa ttcctgaatg
      181 tgttacatta gaaaaaaatt caggacgtat gaccacgatt gcgttgtaca acatcaaggg
      241 cggtgtgggc aaaaccgcgg gttgtgtaaa cctggcctac ctggccagtg aagaaggcaa
      301 acaggtgttg ctatgggacc tcgatccaca agggtccgcc tccttttact tcaaaataga
      361 tcctcatctg aagggcggcg ccaaaaaact gctgggcggc gacgctgcca cttttgaagc
      421 caatatccaa cccaccgaat acgacaactt atcgctgctg ccagccgatt tcagcaaccg
      481 acatctcgat gtgatcattg aggaaaccaa gcaggccaag aagaaactga agagcctgct
      541 ggcctcttta cagggcagct acgattacct gttcattgat tgtccacccg gcattggccc
      601 gttgagcgaa gccatttttg ctgccgccga tttcgtggtg ttgcctacca ttcccaccac
      661 gctcagcatc cgcacttacg aaatggtgca ccagtttttc gaaagcaaca agctcgatga
      721 aaaccgcatc attccttact tcagcatggt ggacatcagg aaaaacctgc acaacgaaac
      781 actgggcaag tattacaaaa acaagcagtt cctgaaaaac tatatcccct acctgagcac
      841 ggtagaaaag atgggcaacc acctggcgcc tgtggctcat ttcgcggcga gcagctacgc
      901 agcgcagtgc taccgggatg tttggaagga actgaagaaa aagattggcg cctgaaaaat
      961 catggccctc taataaaaaa gacctccggt gagcggaggt ctttttgcta tggacatgtc
     1021 tatttagtca attgctcggt tacttctttc atcctgtcga agatgttctg aatgtttttt
     1081 gaaaccaggg tttcataccc ggaaaaatct tcgccctccc attttccctt tttatcagtt
     1141 ttgatcacaa tggctccgtc cttactgatg aattctgtgc cgaggtaata catggcctcg
     1201 ttataaccgg caccattgaa tccggcatac ttcttatcct ttttcggaat gggattgggc
     1261 ccgagcaggt gtaaggataa tttagaaaaa gcgatgcctt ctttgctgct gaaaatttca
     1321 ttttgaataa ccataaccgc atctacgccc aaggcttttg ccatcaggcc taaggaattt
     1381 ccaaacttgt aatcaggata ggcactggct gcatttatgt acctggtacc atcggcagta
     1441 aaaatggatc cgtctatgtt atttaccaac aacgcattgc ccaaccagga tgcttccaac
     1501 tggtaattat tataaacaga ctccaactga ggattacttt ttatcaactc gctcagggta
     1561 acgaattcaa tattgttctg acttccaaaa gccttcagcg cattcactgc catgggaaag
     1621 gaggtttcag tgatgtgctt aacggcgttg tcactggtcc acctggtttc tgtaaccctg
     1681 aagtatttgt tgcccgactg tttgaattgc tgatcatctt gtacagcaaa acatatgatg
     1741 gcgatcttct taattttcaa agccgggaaa taaggcgttt ttccgtggcc atcttcatcc
     1801 acattgatga aatcagcttt gtagaatttt ggcttcgggc ggaattcggc attcttcaga
     1861 acattgccat cggcccattc tttcaggctg ctttgtgcat acaatcccat gctaaacagg
     1921 atggcgcaaa ctgataacag gataaaactt gcagggtttt tcatgctttg aaatttgcca
     1981 atgaagttct accggtctgt tacggtcgcc aatactgcat ttatagtatt ttcccagtga
     2041 gcagatcaag caatcctgtc gttcgctatc ttctcagcct caattgtgat acatggcccg
     2101 ccgccttttt acatacctgc tactgttggt attgccatgc tgcacaggct ttataagcat
     2161 ggcgcaattg tttgtattca ggcaactcac caccgccgat ggcctgccca gcaattttgt
     2221 aaatggattg cagcaggata ccaaaggcaa tatgtggttt gctaccgaca aaggtgctgc
     2281 cgcttacaac gggcaaagct ggctcacact gacaaccgat gatggactgc ccagcaatat
     2341 ggt
//
LOCUS       DATIQF010000124         1592 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_108490,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000124 DATIQF010000000
VERSION     DATIQF010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1592
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108490"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..203
                     /locus_tag="VLL95_01940"
     CDS             <1..203
                     /locus_tag="VLL95_01940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37648.1"
                     /translation="SDGILNDDKYDIDDIGHPFLYQIGQSIYQYELKRERKHRPDLKA
                     FQLKYGQRDPNDKRPPVRNADN"
     gene            271..693
                     /gene="rnpA"
                     /locus_tag="VLL95_01945"
     CDS             271..693
                     /gene="rnpA"
                     /locus_tag="VLL95_01945"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: protein motif:HMM:NF013022.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HSR37649.1"
                     /translation="MSATQKENTLGKAEKLKSRKQIELLFAEGKGFTAFPVKVVYLVR
                     QTDGPEMDIDSAAIQLGVSASTRHFKHATDRNRIKRLLREAYRQQKHELQETAAQKGV
                     GLSVFFIYLDKTLPGYDLLFDKMRYCLKRLRKTLEELP"
     gene            690..971
                     /gene="yidD"
                     /locus_tag="VLL95_01950"
     CDS             690..971
                     /gene="yidD"
                     /locus_tag="VLL95_01950"
                     /inference="COORDINATES: protein motif:HMM:NF013932.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HSR37650.1"
                     /translation="MKSCCAEAMGDAPKSNKPAWWKQVLAFPFILIIRFYQLVISPWL
                     GPKCRYTPTCSQYALEAFRKYGPFKGFWLSIKRISSCHPWGGHGYDPVP"
     gene            1008..>1592
                     /locus_tag="VLL95_01955"
     CDS             1008..>1592
                     /locus_tag="VLL95_01955"
                     /inference="COORDINATES: protein motif:HMM:NF015279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37651.1"
                     /translation="MPTPVYQSLASSVQNGDFKSLARCISLVENQVPGTDDFLQQLPS
                     SDTPVIGITGPPGAGKSTLVDGLIDHWVKAGKKVGVLCVDPSSPFNLGALLGDRIRMS
                     EWYNHPHVFIRSLATRGSLGGLHPYILEITDVMKLAGFDYILVETVGVGQSEVEIAGL
                     ADCTVVVVVPEAGDEIQTMKAGLMEIADVFVVNKA"
BASE COUNT          412 a          405 c          416 g          359 t
ORIGIN      
        1 acagcgatgg cattctgaat gatgataaat atgacatcga cgacattggc caccccttcc
       61 tgtaccaaat tggccagtcc atttaccaat atgaattgaa aagggagaga aagcaccggc
      121 ccgatctcaa agcgtttcaa ctgaagtatg gccagcgtga ccccaatgac aaacggccac
      181 cggtgcgaaa tgcagacaac tgatctggag gactttcatt aacaaaccac ccctccaaac
      241 tttgctactt ttgcccacgc attattatca atgagtgcca ctcagaaaga aaacaccctg
      301 ggcaaagcag aaaagctgaa aagccgcaag cagattgaat tgctgtttgc ggaaggcaaa
      361 ggctttacgg cattcccggt gaaagtggta tacctggtcc gtcaaacaga tgggccggaa
      421 atggatattg atagtgcagc aatacaattg ggcgttagcg caagtacccg ccatttcaaa
      481 cacgccacag atcgcaatcg catcaagcgg ttgcttcgcg aagcctaccg ccagcaaaag
      541 catgaactgc aggaaacagc cgcgcaaaaa ggtgtgggct tgtcggtatt cttcatttac
      601 ctcgacaaga ccctgcctgg ttatgacctg ctttttgata agatgcggta ttgcctgaag
      661 cgactgcgta aaacactgga ggagttgccg tgaagagttg ttgtgccgaa gcgatgggcg
      721 atgcgcccaa aagcaataag cctgcctggt ggaaacaggt gctggcattc ccttttatac
      781 tcatcatccg cttttaccaa ttggtcatca gtccctggct gggccccaaa tgccgctaca
      841 cgcctacctg cagtcaatac gcgttggagg cattcaggaa atatggacca ttcaaaggtt
      901 tctggctctc catcaaacgc atcagcagct gccatccctg gggtggacac ggttacgatc
      961 cggtgccata acagcaagca cgattgcgtt acatttgaag cattgtgatg ccgacccctg
     1021 tttatcaatc attagcttcc tctgttcaaa atggcgattt caaatcgctg gcccgttgca
     1081 tttcgctggt agaaaaccag gtgccgggaa cggatgattt tctgcaacaa ttgccctctt
     1141 cggatacgcc cgtcattggc attacgggtc cgccgggcgc cggcaaaagc acgctggtgg
     1201 atggcctgat tgaccactgg gtaaaggccg gaaaaaaagt gggagtcctt tgcgtggatc
     1261 cttcctcacc tttcaacctg ggcgccttgc tgggcgaccg cattcgcatg agtgaatggt
     1321 acaatcatcc ccatgttttc atacggtcgc tggctacccg tggttccctc ggcggcctgc
     1381 atccttacat tttggagata accgatgtga tgaagctggc gggattcgat tacatcctgg
     1441 tggaaacagt aggcgtagga caaagcgaag tggagatagc cgggctggcc gactgcaccg
     1501 tggtggtggt ggtgcccgag gccggcgatg aaatacaaac catgaaagcc ggcctgatgg
     1561 aaatagcgga cgtgtttgta gtgaacaaag cc
//
LOCUS       DATIQF010000125         5532 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_260514,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000125 DATIQF010000000
VERSION     DATIQF010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5532
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260514"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1913)
                     /locus_tag="VLL95_01960"
     CDS             complement(<1..1913)
                     /locus_tag="VLL95_01960"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HSR37652.1"
                     /translation="MKNLLLSVATLFLLILEPLSGWAQAPATFILNGKVLNTRNQPVA
                     GATISVAGKNTAANADGEFAIKLPSGKYAIKVSAVGYQSKEVADVEVRAGIDNTLDVL
                     LQDKKSELDEVVVRSTRRQESTGTLLTFQKNNISMSSGLAADFIRRTPDKNTGEVLRR
                     VSGASIQDNKFVVVRGLGDRYNSAMINGAQMPSSEPDKKAFSFDIIPSQMIDNIVINK
                     TATPDMTGEFTGGLVQVTTKDIPTKNLVNLGMSFGFNTQSFGKDFVSNKRGKNDWLGF
                     DDGQRALPASYPTKYRAFDRLPESERYAISRDFNDAVFDEVNSKAGPIQQYNVTWANA
                     SRFKNGDAFGSVLGLTYRNSKLLFPEVDRQIFDFDGTPLLDYVDAQNKYSVTWGALAN
                     FAYTHGKTKIAFKNLFNQLFEDNYYRRKGVNIDNLQDVDMRSSVLNQRSLYSGQLELT
                     HQFANKFRVVANGNYYFNNKQQPDLRVQTYGRAYGTNEAFVINNRGNNTNRFWSDLKD
                     EGLGGTVKLEMPFNLKGVKQVATVGGGALSRVRTFSAVIMAVNDPADRNLTKLPFNQI
                     FASENFNPNGFRYITDLQNVNDRYFGASALSNAFVMFDNKFAEKFRLVWGVRGEYFEQ
                     VVETNATKQLEVDT"
     gene            complement(2021..3325)
                     /locus_tag="VLL95_01965"
     CDS             complement(2021..3325)
                     /locus_tag="VLL95_01965"
                     /inference="COORDINATES: protein motif:HMM:NF019042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HSR37653.1"
                     /translation="MRKSLWALLSTERTIALSKAKGSKIPCHVAKFVLAIFCIGMALP
                     AAFSQVARPDSVALKPASQPKKWYENFSIRGYAQVRYNRLLETNPQLKCEQCDRSWGE
                     GGGFFLRRVRVIISGHISDRVFIYIQPDFASSASATGLHFGQLRDAYFDVAFDKKKTF
                     RARFGQSKIPYGFENMQSSQNRLPLDRNDGLNSAVVNERDLGVFLYWAPAAKRELFER
                     LVRDCLKGSGDYCIAAFGVYNGQTANRPELNDAPHMVGRFTWPFEMSNGQIVEAGIQG
                     YVGKYVISDTTKGVKVTMPKGSFDDRRIAGSFILYPQPLGIQAEYNIGTGPQFDPATN
                     SIKQTNLSGGYILVSYMFKPGNMVVIPFSRYHYFEGGKKHELDARSHSVNEFEAGIEW
                     QITRNFEFTTMYTISDRRFEDGRLPVNSQSGSLLRLQAQVNF"
     gene            3457..4104
                     /locus_tag="VLL95_01970"
     CDS             3457..4104
                     /locus_tag="VLL95_01970"
                     /inference="COORDINATES: protein motif:HMM:NF013982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HSR37654.1"
                     /translation="MALNSILKFFLPKDRIFYELFESVADNLELMGKKLKDIVSETDF
                     DKRAALIKQVEDLEHKNDEVTHRIFTELGRNFITPFDREDIHYLASALDDIADYIYAS
                     AKKINFYRVNPNDIGISKFAELIDQGCMQVKIAVKELRNMKNVRNITEALVRVNSIEN
                     QADDVFDLSIERLFASEPDAKEVIKKREIYQVLELVTDKFEDAGNVIESIIIKYA"
     gene            4157..>5532
                     /locus_tag="VLL95_01975"
     CDS             4157..>5532
                     /locus_tag="VLL95_01975"
                     /inference="COORDINATES: protein motif:HMM:NF013543.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HSR37655.1"
                     /translation="MTLLIVIIALALIFDYINGFHDAANSIATVVSTKVLTPFQAVVW
                     AAIFNSVAYFIFKDHAVANTISKTVNKEFITLPVIFAGLLAAIFWNLLTWWYGIPSSS
                     SHTLIGGFAGAAIAHALSIKGMGYSWSKIVESDIILNTVLFIFLAPLIGMLISIFITI
                     VTIMRNVWLRIGIIAVVTAITVLLFDHFEASKMDENLQKFLKVDKYKKEVKESLAKKE
                     ANPADTAAIKAFAVATEKLEKALPNYEKIALLVNDYDKLGATKIARIAADSGWLKDIE
                     ASRLKDDVRNANDYLILEAKATSDAAAKKEFDFAKEATEKYKDPLKKYFKGEYSLDST
                     MVALNAIFPIKEANTEKIRKKIEQFSIEKAFAKDIDKADNSAIVWGIIAASIMFCLVY
                     LYVEKIKTPTAYKVGNMFKKLQLFSSAAFSIGHGGNDAQKVMGIIGAALIANGSIQNF
                     SDLPNWVPV"
BASE COUNT         1433 a         1356 c         1320 g         1423 t
ORIGIN      
        1 gtatccactt ccagttgctt ggtagcattg gtttccacca cctgctcaaa atattcgccg
       61 cgtacacccc acaccaggcg gaacttttca gcaaacttgt tgtcgaacat cacgaaggca
      121 ttgctgaggg ccgaagcgcc aaagtagcgg tcgtttacgt tttgcaggtc ggtaatgtag
      181 cggaagccgt tggggttgaa attttcgctg gcgaagatct ggttgaaagg cagcttggta
      241 aggttgcgat cagcaggatc attcacggcc atgatgactg cgctgaacgt acgcaccctg
      301 ctcaaagcac caccgccaac agtggccacc tgcttcactc ctttcaggtt gaaaggcatt
      361 tccaatttca ctgttccacc gaggccttcg tctttcagat cactccagaa acggttggtg
      421 ttgtttccgc ggttgttgat cacaaaagct tcattggtgc cataggcacg tccataagtt
      481 tgtacccgca gatcgggctg ttgtttgttg ttgaagtagt aattgccgtt ggccaccacc
      541 cggaatttat tcgcaaactg gtgggtcagt tccaactgcc cgctgtacaa actgcgctgg
      601 ttcaaaaccg aagaacgcat gtccacatcc tgcaggttgt cgatgttcac acctttgcgg
      661 cggtagtagt tgtcttcaaa aagctggttg aatagattct tgaaagcaat ctttgttttg
      721 ccgtgtgtgt aggcaaaatt ggccagggct ccccaggtca cactgtactt gttttgtgca
      781 tccacataat ccagcaaagg cgtgccgtcg aaatcgaaga tctggcgatc cacttcaggg
      841 aaaagcagtt ttgaattgcg gtaggtaagg cctaacaccg aaccaaaagc atccccgttt
      901 ttgaaccggg aggcattggc ccaggtaaca ttgtactgct gaattgggcc cgcttttgaa
      961 ttgacctcat caaaaacagc gtcattgaaa tcgcggctga tggcatagcg ttcgctttcg
     1021 ggaaggcggt cgaatgcacg gtatttggtg ggataggaag ctggcaaggc tcgctggccg
     1081 tcatcaaaac ccagccagtc gtttttgccc cgcttattgc ttacaaaatc ttttccaaaa
     1141 gactgggtgt tgaagccaaa gctcatgcca aggttcacca ggtttttggt aggtatgtct
     1201 ttggtggtta cctgcaccaa acctccggta aattcccctg tcatgtcggg ggtggccgtc
     1261 ttgttgatga cgatattgtc aatcatctgc gacggaatga tatcgaaaga gaaagctttc
     1321 ttgtcgggct cagaactggg catctgtgcc ccattgatca tggccgaatt gtagcggtcg
     1381 cccaaaccac gtaccaccac aaatttgttg tcctggatgg aagcgccact caccctgcgc
     1441 aaaacctctc cggtattctt gtcgggtgta cgcctgatga aatcggccgc caacccgctg
     1501 ctcatggaaa tgttgttctt ctggaaagtg agcagtgtac ctgtgctttc ctggcgccgg
     1561 gtactgcgca ccactacttc atccaattca gatttcttat cctgcagtaa tacgtccagc
     1621 gtgttgtcaa taccggcacg aacttccaca tcggccacct ctttgctttg gtaacccacc
     1681 gcggaaactt tgatagcgta ttttccggaa ggcagtttta tggcaaattc tccatcggca
     1741 ttggcggctg tgtttttgcc ggccacgcta atggtggcgc cggctacggg ctggttcctt
     1801 gtgttcagca cctttccgtt tagtatgaag gtggcagggg cttgtgccca tcctgacaaa
     1861 ggttccagga tcaacaaaaa cagggtagcg actgacaaca gcagattctt cacgtgagcg
     1921 attttgattt cgctgcaaag tgaatggagc catattaccg ctttgttacc tccatattaa
     1981 ggatttgtaa cgctgtatta ccgcaatgtt aagtacaggg tcagaagttt acctgcgcct
     2041 gcagcctcaa caagctgcca gactggctgt ttacaggtag gcggccgtct tcaaacctgc
     2101 gatcagaaat ggtgtacatg gtggtgaatt cgaaattccg ggtgatctgc cattcaatgc
     2161 cggcctcaaa ctcatttaca ctgtggctcc tggcgtcgag ttcatgcttc tttccccctt
     2221 caaaataatg atagcgggaa aagggaatta ccaccatatt gccgggcttg aacatatagc
     2281 taacaagaat atacccaccc gacaaattcg tttgtttgat gctgttggtg gccggatcaa
     2341 actgtggacc agtgccaatg ttgtattctg cctgtatgcc cagcggttgt ggatacaata
     2401 tgaaagagcc ggcaatcctg cggtcgtcaa atgaaccctt cggcatggtc accttcaccc
     2461 ctttggtagt atcggagatc acatacttgc ccacataacc ctgaatgcct gcttctacaa
     2521 tttgtccatt ggacatttca aacggccacg taaacctgcc caccatgtgc ggagcatcgt
     2581 tcaattcggg gcggttggct gtctggccat tatatacacc aaaagctgcg atacaataat
     2641 caccggagcc tttcaaacaa tcacgcacca gccgttcgaa aagttctctt ttggcagccg
     2701 gggcccaata caggaataca ccaagatcac gttcattcac tacagcactg ttcagtccat
     2761 cgttccgatc caatggcagg cggttctggc tactctgcat attttcgaaa ccgtagggta
     2821 ttttgctttg gccaaaacga gccctgaatg ttttcttctt gtcgaaagcg acatcaaaat
     2881 aggcatcacg caactgccca aagtgcaggc cggtggcaga ggcactcgaa gcaaaatcgg
     2941 gctggatgta aatgaaaacc ctgtcagaaa tatgaccgct gataatgacc cggacccggc
     3001 gcaggaagaa gccgccccct tcgccccagc tacggtcgca ttgctcgcat ttgagttggg
     3061 gattggtttc cagcaaacga ttatagcgca cctgggcata accacgaatg gaaaagttct
     3121 cataccattt cttgggctgg ctggcaggct tcagtgcgac actgtcaggc ctggctacct
     3181 ggctgaatgc tgcaggcaaa gccatgccga tacagaaaat tgccaatacg aatttggcaa
     3241 catgacatgg gattttagag ccttttgcct tcgacagagc aatagtacgc tccgtggaca
     3301 gcaatgccca gagtgatttt ctcattttta cgaattcaag ccgcaaatgt cattcagagc
     3361 cccattaagt ttagattaag aaattgttac catcccgata ttcgccggta aaacaccccg
     3421 caaagccgca attttgcgga cgaaaaaaac aacaacatgg cgctaaattc tattttgaag
     3481 ttctttttgc ccaaggaccg catcttttac gaattgttcg aatctgtggc tgacaacctg
     3541 gaattgatgg gcaaaaaact gaaagacatt gtttctgaaa ccgacttcga taagagagca
     3601 gcgctgatca aacaggtgga agacctggaa cacaaaaatg atgaagtaac gcaccgcatt
     3661 tttactgagt tgggccgcaa cttcatcacc ccctttgacc gcgaagacat ccactacctg
     3721 gcttctgccc ttgatgatat cgcggactac atttatgctt ctgccaagaa aataaacttc
     3781 taccgggtta accccaatga tatcggcatt tcaaaattcg ccgaactcat tgaccagggg
     3841 tgcatgcagg taaaaattgc agtgaaagaa ttgcgcaaca tgaaaaatgt gcgcaacatt
     3901 accgaagcgc tggtgcgggt aaacagcatc gagaaccagg ctgatgatgt gtttgacctg
     3961 agcatcgaac gcctttttgc gagtgaacct gatgccaaag aagtgatcaa gaaaagggag
     4021 atctaccagg tgcttgaact ggtgaccgac aagtttgagg atgccggcaa tgtgattgaa
     4081 tctatcatca tcaagtatgc gtaatgaacg caggtttgcc tgagtcgttt tcacaagaac
     4141 ctttaccgat ccctttatga cattattgat tgttattata gcactggcat tgatctttga
     4201 ttacatcaat ggctttcatg atgctgccaa ctctattgcc acggtggtga gcaccaaggt
     4261 gctgacgcct ttccaggctg tggtttgggc tgccatcttc aattccgtgg cctacttcat
     4321 tttcaaagac catgcggtag ccaacaccat cagcaaaacg gtaaacaaag agttcattac
     4381 gcttccggta atttttgccg gtttgctggc cgctattttc tggaacctgc tcacctggtg
     4441 gtatggaatt ccttcttctt catcgcacac gcttatcggt ggatttgccg gcgccgctat
     4501 tgcgcatgct ttgtccataa aaggcatggg gtattcgtgg agcaaaattg ttgagtctga
     4561 tatcattctc aataccgtgc tcttcatttt cctggcacca cttatcggta tgttgatctc
     4621 catcttcatc accattgtca ccatcatgcg caatgtgtgg ttgcgcattg gcatcattgc
     4681 agtggttacc gctataacgg tactgctgtt cgatcatttt gaagccagca aaatggacga
     4741 gaacctccag aaattcctga aggtagacaa gtacaaaaaa gaggtgaagg aatcgctggc
     4801 taaaaaagaa gccaatcctg ctgatacagc agccatcaaa gcctttgcag tagctacgga
     4861 aaaactggag aaggcgctgc ccaattatga aaagatcgcc ctgctggtaa atgattacga
     4921 caagttgggc gctactaaaa tagccaggat cgccgccgat tcaggatggt tgaaagacat
     4981 tgaagccagc cgcctgaaag atgatgtgcg caatgccaac gactacctca ttcttgaggc
     5041 aaaagccact tcggatgcag cagccaaaaa agaattcgac ttcgcaaaag aggccaccga
     5101 gaaatacaag gatcctttga aaaaatactt taagggtgaa tactcgctgg atagtaccat
     5161 ggtggcgctc aatgcgatct tccccatcaa ggaagccaac actgaaaaga tcagaaagaa
     5221 gattgagcag ttcagtatag agaaagcatt tgcaaaagac attgacaaag cagataacag
     5281 cgccattgtt tggggcatca ttgcagcctc tatcatgttc tgcctcgtct atctctatgt
     5341 tgaaaaaata aagacgccta ctgcctataa ggtgggcaac atgttcaaga aattgcagtt
     5401 gttcagctca gctgccttca gcattggtca tggcggaaac gatgcccaaa aagtgatggg
     5461 tataattggc gccgcactca ttgccaatgg cagcatccag aacttctctg atcttcccaa
     5521 ctgggtgccg gt
//
LOCUS       DATIQF010000126         3940 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_93209, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000126 DATIQF010000000
VERSION     DATIQF010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3940
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93209"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1375)
                     /locus_tag="VLL95_01980"
     CDS             complement(<1..1375)
                     /locus_tag="VLL95_01980"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HSR37656.1"
                     /translation="MRIVLIAVATLLLAQSPASAQQNGNYALAARLSPKKLEKLLFST
                     SVDAHWLKNGDRFWYMYQTTEGKQWWLVDDATGSKKPLFDNDKMAAEITKIVKDPFDG
                     KHLPIDRIKFVKNESAFQFEVKSTEEIEKKDTTKKGAEPTKEKKSYWFEYDIATGAVT
                     ELKDHQKPKERPNWASISPDGRIVVFSKKNNLYWMDSANYRKALANEDDSTIAETQMT
                     TDGVEDFSYGGSRNETNVEKEKNKNKRKPAFIYWSPDSKNFAIIRSDERQVKDLWVIN
                     NVAEPRPTLETYKYHMPGEKEAPVRHLYVFSVDSKASTIINTAAFKNQELGLWSAPMK
                     ENTRDDDYRPNIWLGTNQYFFVNRTSRDLKKIDICRVDIATGKLTALIEERLNTYVEI
                     RRPGLINGGKEIVHWSERDGWGHFYLYDENGKLLRQITSGPWHAEDIEGIDEASRTLY
                     FTANGREK"
     gene            1517..2962
                     /locus_tag="VLL95_01985"
     CDS             1517..2962
                     /locus_tag="VLL95_01985"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HSR37657.1"
                     /translation="MAEQTHFKQSLGLMDGTLIVIGSMIGSGIFIVSADITRNVGSAG
                     WLIAVWLITGFMTLTAALSYGELSGMFPKAGGQYVYLKEAYNPLMGFLYGWSFFAVIQ
                     TATIAAVGVAFSKFLAYLVPQLGNNYFLFDAGITKVYSGQLVAIAIIFLLTYINSKGV
                     KEGKWIQTIFTTAKLLALFGLIVLGFLLAKENFWAENWNSGFNSMQDLGQKDADGTLI
                     PTSWVGISGGALMGAIASAMVGSIFSSDSWNNVTFIAGEMKNPKRNIGLSLFLGTLIV
                     TIIYVSANLMYLYVVPLNELAFPVDDRVAVAAANRIFPSFGTILVAVLIMISTFGCNN
                     GLIMAGARVYYTMAKDGLFFKQAATLNKNAVPQWALWAQFIVASVLCLSGRYGDLLDM
                     ISFVVVLFYVLTIIGIFILRKKAPDHERPYKAFGYPVLPIVYIVLGISFCTLLLLYKP
                     AYTWPGFIIVAIGIPLYFVARRTFEPVASDD"
     gene            3026..>3940
                     /locus_tag="VLL95_01990"
     CDS             3026..>3940
                     /locus_tag="VLL95_01990"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HSR37658.1"
                     /translation="MFDSIFNEFEKLHVAVVGDIMLDTYWWGIADRISPEAPVPVVNV
                     KSKEYRIGGAGNVALNLLNLGARVSMHSVTGTDEDGLLLEIMMKDKGINTDGVWKSDD
                     RLTTNKIRIVSRNQQLLRLDYENSNDLLPEKEQRFIEKTIALFDADKPDVVIFEDYNK
                     GVLTEKIIESLIAYCQQQGIMTAVDPKRRNFFAYKGVDIFKPNLKEAREALNLTDGMV
                     ELEYCNGIHNKLAAMLKHSISLITLSEHGVFVHDGQAGKIIPAHLRNIADVSGAGDTV
                     IAVASLVYAATKDATMMAEISNLAGGIVC"
BASE COUNT          888 a          906 c         1012 g         1134 t
ORIGIN      
        1 ttttctcccg tccattggcg gtgaagtaca aggtgcggct ggcttcatct atgccttcaa
       61 tatcttctgc atgccagggg ccactggtga tctggcgcaa cagtttgcca ttttcatcgt
      121 acaggtaaaa gtgaccccag ccatcgcgtt cactccagtg tacaatttcc ttgccaccgt
      181 tgatcaatcc cgggcgacgg atttcgacat aggtattcag cctttcttca atcagggcgg
      241 tgagtttgcc tgttgcaatg tccacccggc agatatcaat ctttttcaaa tcgcggctgg
      301 tgcggttcac aaagaagtat tgattggtgc ccagccaaat gttggggcgg tagtcgtcat
      361 cacgggtatt ctctttcata ggggcactcc aaagtcccaa ttcctggttc ttgaaagcag
      421 ctgtatttat gatggtggaa gctttgctgt ctacagaaaa cacatacagg tgacgaacag
      481 gagcttcttt ttcaccgggc atatggtact tgtatgtctc cagcgtgggc cggggttcag
      541 caacgttgtt gatcacccat aggtctttta cctgcctttc gtcgctgcgg atgatggcaa
      601 agttttttga atcgggtgac cagtaaatga aggcgggctt gcgcttgttc ttgttttttt
      661 ccttctccac attcgtttca ttgcggctgc caccatagct gaaatcttcc acaccatccg
      721 tggtcatttg agtttctgca atggtgctgt cgtcttcatt ggccagggct ttgcggtaat
      781 tggcagagtc catccaatac aggttgttct tcttcgagaa aaccacaatg cggccatcag
      841 gcgaaatgga agcccagttc gggcgttcct tgggcttttg gtggtctttg agttcggtta
      901 cggccccggt tgcgatgtcg tattcaaacc aatagctttt tttctctttg gttggttcag
      961 cgcctttttt ggtcgtatcc tttttctcaa tctcttctgt actcttcact tcaaattgga
     1021 aggcggattc attttttaca aacttgatgc ggtcaatggg gaggtgtttg ccatcgaaag
     1081 gatcctttac gattttggtg atttcggcgg ccattttatc attatcgaaa agaggcttct
     1141 tgcttcccgt agcgtcatcc accagccacc attgcttgcc ttcggtggtt tgatacatat
     1201 accagaaacg atctccgttt ttcagccagt gggcatccac gctggtgctg aagaggagct
     1261 tttccaattt cttgggagat aacctggcag ccagtgcata gttgccattt tgctgagcgg
     1321 aggccggaga ttgggctaac aacagggtag ccacagctat caatactatt ctcataacag
     1381 cagtttattg aaaaatgaat atatgacgat tatgccgggc aataccgtca ggctggcggt
     1441 gctggttgtg ggaatctcgc aggtgtctgc ttcggctatt tgactatatt gcccgcttca
     1501 taaccaaaag aaaaacatgg ctgaacaaac ccatttcaaa caatcgcttg gcctgatgga
     1561 tggcaccctc atcgtgattg gttccatgat cgggtccggt atttttattg taagtgccga
     1621 tatcacccgc aatgtgggca gtgcaggttg gttgatcgct gtatggctga tcaccggttt
     1681 catgacactg acggcggcac tcagttatgg cgagttgagt ggcatgtttc ccaaagccgg
     1741 cggccagtat gtgtatctca aggaggcgta taatcctttg atgggctttt tgtacggttg
     1801 gagttttttt gccgtgattc aaacggctac cattgctgca gtgggcgtgg cgttttctaa
     1861 attcctcgcc tacctggtac ctcaattggg caacaactat ttcctgttcg atgccggcat
     1921 caccaaagtt tattcaggac aattggtggc cattgccatc atctttttgc tcacctacat
     1981 caattcaaag ggagtgaaag aaggcaagtg gatacagacc atttttacta ctgccaaatt
     2041 gctggcgttg ttcggactca ttgtgttggg ttttttgctg gcgaaagaaa atttctgggc
     2101 ggaaaactgg aactcgggtt tcaattccat gcaggatctc gggcagaaag acgccgatgg
     2161 taccctgata cctaccagtt gggtgggcat atcaggcggc gctttgatgg gggctatcgc
     2221 ttctgccatg gtgggttcca ttttcagcag tgattcctgg aacaatgtca ctttcattgc
     2281 cggcgaaatg aagaacccca aacgaaacat tggcctgagt ttgtttttag gtacactgat
     2341 cgtgaccatc atttatgtgt cggccaacct tatgtatttg tacgtggtgc cgttgaatga
     2401 actcgctttc ccggtggacg acagggtagc ggtagctgct gccaaccgga tctttccatc
     2461 cttcggtacc atactggtgg ccgtcctcat catgatctcc acctttggtt gcaacaacgg
     2521 gttgatcatg gctggtgccc gggtatatta taccatggcc aaggatggct tgtttttcaa
     2581 gcaggcagca accctgaata aaaacgcagt gccgcagtgg gctttgtggg cgcaattcat
     2641 tgtagcgtca gtattgtgcc tcagcggccg ctacggcgat ttgctcgaca tgatttcatt
     2701 tgtagtggtg cttttctatg tactcaccat tatcggcatc tttattctgc gcaaaaaagc
     2761 gcctgatcat gagcggcctt acaaagcatt tggttacccg gtactgccaa tagtctacat
     2821 cgttttgggt atttcatttt gtacactgtt gctgctgtat aagccggcgt atacctggcc
     2881 tggctttatc attgtggcca taggcattcc tttgtacttt gtggcccggc gcacatttga
     2941 gcctgtggct tccgatgatt aatgcgcaga ataaaatgac ccggcggcaa gctgtatttt
     3001 tgccctaatg gaaacaggcg tcgttatgtt tgattcaatt ttcaatgagt ttgaaaaact
     3061 gcatgtggcc gtggtcggtg atatcatgct tgatacctac tggtggggga ttgctgatcg
     3121 gatttctccc gaagcgccag tgcctgtggt gaatgtaaaa tcgaaggagt acaggattgg
     3181 cggcgccggc aacgtggcat tgaaccttct gaacctgggt gcccgggtga gcatgcattc
     3241 ggtaaccgga acggatgagg atggtttgtt gctcgagatc atgatgaagg acaaggggat
     3301 caacaccgat ggtgtttgga aaagtgatga ccgccttacc accaacaaga tccggatcgt
     3361 gagccgcaat cagcagctgc tgcgtcttga ttatgaaaac agcaatgacc tgttgcccga
     3421 aaaggaacag cgattcatag aaaagaccat tgcccttttt gatgccgaca aacctgatgt
     3481 ggtcattttt gaagattaca acaaaggggt actcaccgaa aagatcatcg agtcattgat
     3541 tgcttattgt caacagcagg gcatcatgac tgcggtggat ccgaagcggc gcaacttctt
     3601 tgcctacaaa ggggtggaca tattcaagcc aaatttgaaa gaagctcgtg aagccttgaa
     3661 cctgactgat ggcatggtgg agcttgaata ctgcaatgga atacacaaca agctggcggc
     3721 catgctgaag cattctattt cgctgatcac cctcagcgaa catggcgttt ttgtacatga
     3781 cggacaagcc ggcaaaatca ttcccgctca tctgcgcaac atagccgatg taagtggcgc
     3841 cggcgataca gtcattgcag tggcatcact ggtttatgct gctaccaaag acgccacgat
     3901 gatggcagag atttcgaacc tggcaggcgg aattgtttgc
//
LOCUS       DATIQF010000127         5534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_290886,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000127 DATIQF010000000
VERSION     DATIQF010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5534
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290886"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            46..657
                     /gene="mqnB"
                     /locus_tag="VLL95_01995"
     CDS             46..657
                     /gene="mqnB"
                     /locus_tag="VLL95_01995"
                     /EC_number="3.2.2.26"
                     /inference="COORDINATES: protein motif:HMM:TIGR03664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="futalosine hydrolase"
                     /protein_id="HSR37659.1"
                     /translation="MKILLVSATQLEIQEYLLSAPHHDILITGVGLHHAIYELTDQLH
                     GHHYDLVIQAGVAGAFEGSGLNMGDVVAVKQDAFGDAGSFEKEKFLSLLSLGLTTDKE
                     WMINQNSLLGKLKIPQVKSITINTITDYMPFVNALQQKWKADIESMEGAALHFVCAKK
                     NVPYLQLRAISNFVGERDKNKWLLATAIGNLNGALKALIGSLS"
     gene            724..1560
                     /locus_tag="VLL95_02000"
     CDS             724..1560
                     /locus_tag="VLL95_02000"
                     /inference="COORDINATES: protein motif:HMM:NF014658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-6-naphthoate synthase"
                     /protein_id="HSR37660.1"
                     /translation="MKLTLGFSPCPNDTFIFDALVNGKIDTGGLEFDVLLEDVQTLNQ
                     WAREGKLDISKISYGVLPRIIDEYVVLSSGGALGNGVGPLLISKHETNGTKAEVEQKV
                     NNTVVAIPGEDTTAHFLFSQAFPNATHKKFLRFDEIENFVAEGKGLGVIIHENRFTYQ
                     SKGLHKVIDLGDYWEQTTGNPIPLGGIVMKRSFGPALANHVDQLIHQSLENAFAQYPM
                     VTNYVRCHAQEMSEDVMRQHIDLYVNDYSLSLGAAGKAAVLQLLHTLSGKAFPEAAIF
                     TS"
     gene            1620..2330
                     /locus_tag="VLL95_02005"
     CDS             1620..2330
                     /locus_tag="VLL95_02005"
                     /inference="COORDINATES: protein motif:HMM:NF025702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4397 domain-containing protein"
                     /protein_id="HSR37661.1"
                     /translation="MKKISSFLLLFTCMIGLVAIIPGCKKDDPDSGNAKIMFVHMSPD
                     APPVDILIDNSKINTTALAYTGNTGYSSVAAGTLNIKINAAGTSTTALDVNINGVEKD
                     KHYSVFAINWLSSITAVATEDNLTAPATGKAHIRFMHLSPGTPNVTVGYVSGSTFNPL
                     YTNRAFETPTSVGTYAGFTPIDAGSYNLEVRVAGTSGVLLSAPGVVLQSGKIYTLIAR
                     GVVGSATTPVGASVIVHN"
     gene            2590..3294
                     /locus_tag="VLL95_02010"
     CDS             2590..3294
                     /locus_tag="VLL95_02010"
                     /inference="COORDINATES: protein motif:HMM:NF025702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4397 domain-containing protein"
                     /protein_id="HSR37662.1"
                     /translation="MKRKFSLLSLTLFTALSVALVGCDKDDPQPDQSKVLVVHASPDA
                     PGVDLLVDNQKVNSSALTFPNNTGYLTVNAGTRNIKVNVAGTSTTAINADLTLTKDKN
                     YSVFAIDKVATIKAIAVEDNLAAPASGKAHIRFFHLSPGAPAVTVGVLSGSTFTPVFS
                     NRAFETQATAAANQAFAPVDAGTYTFDVRVAGTTTSVLTLTGINLQAGKIYTVFARGI
                     VGNATTPLGATIITNN"
     gene            3427..4584
                     /locus_tag="VLL95_02015"
     CDS             3427..4584
                     /locus_tag="VLL95_02015"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR37663.1"
                     /translation="MAITSSVSQHARQHRIAVSVFFFVAGCTFASWASRIPHIQAQLH
                     LNEAQLGAVLFALPIGLLVSSFVIGNLVARFGSKTMLHIAATSYSLVLLCLGLANATW
                     QLVLCLFFFGIAGNMFNVSVNTQAIGVEKLYGRSIMASFHGTWSLAGFSGAAIGTIMI
                     WLQLLPWQHFLFISAAGLVASSVFVSKTLMQAGSGQKKKGFAWPDKKLLQLGLIAFGN
                     LVCEGTMFDWSGVYFKKVVMAPASLTTLGYAAFMACMATGRFLADRIVMRIGSRRMLQ
                     YAGILIALGFLLSTVFPSVVMATMGFMLVGFGVSSVVPIVYSQAGQTKKMHPGQALAS
                     VTTIGFAGFLAGPPIIGFVAQATSLRWSFVLVAVIGLSTSILAATLPRKAE"
     gene            complement(4665..>5534)
                     /locus_tag="VLL95_02020"
     CDS             complement(4665..>5534)
                     /locus_tag="VLL95_02020"
                     /EC_number="4.1.99.3"
                     /inference="COORDINATES: protein motif:HMM:NF015406.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003904 - deoxyribodipyrimidine
                     photo-lyase activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HSR37664.1"
                     /translation="YTVFTPYSRKWKAKLTPVHLESYPTEKHFDHFYKQAPVAIPGME
                     QMGFTSVDKPFPARMIKADLITKYKEQRDIPSIEGTSRLGVHLRFGTLSIRKLAKYAQ
                     PLSEGFLNELIWREFYHMILWHFPHVGHGHAFKKEYDRIEWRNNEEEFKAWCEGRTGY
                     PIVDAGMRELNATGFMHNRVRMITASFLIKHLLIDWRWGEAYFAEKLLDFDFAANNGG
                     WQWAASSGCDAAPYFRVFNPTLQMQKFDPELKYVRKWVPEFESLSYPRPIVNHEMARK
                     RVLEVYKKALGNN"
BASE COUNT         1384 a         1379 c         1293 g         1478 t
ORIGIN      
        1 catttggttt agtaaatcga tctttcacgc cgaaaaaaga aacaaatgaa aatactattg
       61 gtatcagcta cccaacttga aatacaggag tatttgctga gcgctccgca tcacgacatt
      121 ctcatcaccg gggtgggcct gcaccacgcc atatacgaac tcaccgatca actgcatggc
      181 catcactacg acctggtcat tcaggcaggc gtggcaggcg catttgaagg cagcggactc
      241 aacatgggtg atgtggtagc agtaaagcag gatgcctttg gcgatgcagg ctcttttgaa
      301 aaagaaaagt tcctttcatt gctttcgctg gggctgacaa ccgataaaga atggatgatc
      361 aatcaaaaca gtttgctggg caaactgaaa ataccacaag tgaaatcgat caccatcaat
      421 accattaccg attacatgcc ttttgtaaat gctttgcaac aaaaatggaa ggctgatatc
      481 gaaagcatgg aaggcgcggc cctgcatttt gtttgtgcca aaaagaatgt gccttacctg
      541 caattgcgtg ccatcagcaa ttttgtgggt gaacgcgaca aaaacaaatg gctgctggct
      601 acggccatcg gcaatttgaa tggtgctctc aaggccctca taggatcatt atcgtaattg
      661 ttacggtttc cggatcatga atgctgctgt tattccttca ttcattactt gctctgattg
      721 gttatgaagc tgacacttgg cttttcgcct tgccccaacg acactttcat atttgatgca
      781 ctggtgaacg gtaagattga cactggtgga ttggagtttg atgtgctgtt ggaagacgtg
      841 caaacgctga accaatgggc ccgggaaggc aaactcgata tcagcaagat cagctatggt
      901 gtgctccctc gcatcattga tgaatatgtg gtgttgagca gcgggggcgc attaggcaat
      961 ggcgtggggc ctttgctgat cagtaaacat gaaacgaacg gtaccaaagc cgaagtggag
     1021 caaaaggtga acaacactgt tgtggccatt ccgggagagg ataccacagc gcattttttg
     1081 ttttcccagg cctttcccaa tgccactcac aaaaaattcc tacggttcga tgaaattgaa
     1141 aatttcgtgg ccgaaggaaa aggtcttggt gtgatcattc atgaaaacag gtttacctac
     1201 caatcgaaag gcttgcacaa ggtgattgac ctcggcgatt actgggagca aaccaccggc
     1261 aaccctatcc cattgggtgg cattgtaatg aaacgcagct tcggcccggc gctggcaaat
     1321 catgttgatc agctcattca tcaaagcctt gaaaacgctt ttgcacaata cccaatggta
     1381 accaactatg tacgctgcca cgcccaggaa atgagtgagg atgtaatgcg gcagcacatc
     1441 gatctttatg taaatgatta ctcattatcg ttgggcgccg ccggcaaggc ggctgtcctc
     1501 cagttattac atacactttc aggaaaagct ttcccggaag cagctatttt tacaagctaa
     1561 tgagcattgc tgcagttttg cagtattcat atccggccat gtataatcaa gaaatttcta
     1621 tgaaaaagat ttccagcttc cttctgttat ttacctgtat gatcggcctg gttgccatca
     1681 tccctggctg taaaaaagac gacccagact cgggcaacgc caagattatg tttgtacata
     1741 tgtcgcccga tgccccgccg gttgacatac tgattgacaa tagcaagatc aatacaacgg
     1801 ccctggccta caccggcaat acgggctatt cctctgtagc tgcaggcacc cttaacatta
     1861 aaataaatgc tgcaggcacc tccaccactg ccctggatgt caacatcaat ggcgttgaga
     1921 aggacaagca ctattcagtg tttgccatta actggctgtc cagcattact gccgttgcca
     1981 ccgaggacaa tcttacagcg cctgccacgg gcaaggccca tatccggttt atgcacctga
     2041 gccctggaac acctaatgta acagtggggt atgtaagcgg cagtactttc aatccattat
     2101 ataccaaccg ggcgtttgaa accccaacga gtgtcggcac ctatgcagga tttacaccca
     2161 ttgatgccgg aagctataac cttgaagtac gtgtggcagg cacttcgggt gtattgttgt
     2221 cagcaccggg cgtggttttg cagtcaggca aaatatatac actcattgcc cggggagtgg
     2281 ttggcagtgc aacaaccccg gtgggtgcgt cggtcatagt gcacaactag aattgtaatt
     2341 atcacatata aaattttggg tcgtgtaaca ctacatgacc cttttttata accaaatggc
     2401 ataagcgtca ttggggtaca aatgcattga taatcaaatt tcagtgaaga caccctgcgg
     2461 aaagtccatc cgttttgttt aacgtaatgc cccatttttg gcttgatttc cgaaccaaat
     2521 gttttgcaaa aacgctaagc gccatgaacc aactatgcat tcgtgtgtca tttgctaaac
     2581 actacttcta tgaaaaggaa attctctctt ttaagcctta cgctttttac agctctctct
     2641 gttgcgctgg ttggttgcga taaagacgat ccacagccag accagtccaa agttttggta
     2701 gtacacgcct caccggatgc tccaggagtt gatttgttgg tagacaacca aaaagtaaat
     2761 tcttcggcac tcaccttccc taataacaca ggctacctca ccgtgaatgc aggcacccgc
     2821 aacattaagg taaatgtagc cggcacttcc accactgcca tcaatgccga tcttactttg
     2881 accaaggata aaaactattc tgtgtttgcc attgacaagg tggcaaccat taaagcaata
     2941 gcggtagaag acaatcttgc cgcacccgct tccggtaagg cacatattcg cttctttcac
     3001 ctgagccccg gcgctcctgc agtaaccgtt ggcgtactca gtggttctac tttcacgccg
     3061 gtattttcaa accgtgcatt tgaaactcag gccaccgccg ctgccaacca ggcatttgca
     3121 ccagtagatg ccggcaccta cacatttgat gtacgtgttg caggaactac cacttctgtg
     3181 ctcacactta ctggcatcaa tcttcaggct ggcaagatct acactgtgtt tgcccgtgga
     3241 attgttggaa acgccaccac cccgctggga gccaccatta tcaccaataa ttaatcgcaa
     3301 acagtcccta taggtttgtc tcatacagtt tttagttggc ctgcacgttt cattcgtgca
     3361 ggctttttta tgttcggcag gcgggctttt gcaagatgcc ttgggtagtt ctgtaacttg
     3421 cccgctatgg cgatcacctc atccgtatcc caacatgccc ggcaacaccg catcgccgta
     3481 tctgtgttct tttttgtggc gggatgcact tttgccagtt gggccagtcg cataccccac
     3541 atacaggccc aactgcactt aaatgaagcg cagttggggg cagtactttt tgcccttcct
     3601 attggcttgt tggtaagttc ttttgtgata ggcaatcttg ttgcgcggtt tggcagcaaa
     3661 accatgctgc acatcgccgc cacctcttac agtctcgtct tgttgtgcct tggtttggcc
     3721 aatgccacct ggcaattggt gctctgcctt tttttctttg gcatagcggg caacatgttc
     3781 aatgtatccg ttaatacaca ggccattgga gttgaaaaat tgtatggccg ttccatcatg
     3841 gcatcctttc atggcacctg gagcctggca ggtttttcag gtgcagccat cggtaccatc
     3901 atgatctggc tacagctttt gccctggcaa catttcttat tcatcagcgc agcagggctg
     3961 gttgccagca gcgtttttgt cagcaaaaca ttgatgcagg ctggcagtgg tcaaaagaaa
     4021 aaaggatttg cctggcccga caaaaaactc cttcaacttg ggctgattgc ctttgggaac
     4081 ctggtgtgcg aaggcaccat gttcgactgg agtggtgtct atttcaaaaa agtagtaatg
     4141 gccccggcaa gtttgacaac actgggctac gcggcattta tggcgtgcat ggctacaggc
     4201 cgctttcttg cagaccgcat cgtcatgcgc ataggttcgc gccgtatgct gcaatatgct
     4261 ggcatcctga ttgcattggg atttctactc tctaccgttt ttccttcggt tgttatggcc
     4321 accatgggat tcatgctggt cggttttggg gttagcagtg tagtgcccat tgtttacagc
     4381 caggcgggcc aaacaaaaaa aatgcacccc gggcaggcat tggcctcagt cacaaccatt
     4441 ggttttgccg gcttcctggc tgggccaccc attatcgggt ttgtggcaca agccaccagc
     4501 ctccgttgga gttttgtgtt ggttgccgtt atcggtctgt ccaccagcat attggctgcc
     4561 accttgccca ggaaggctga ataattgcat gccacccatc ggccattgtc ggcatcagtg
     4621 aatgacagca ttttctgctg gcagggcatt ctttaaagat gttcctaatt attgcctaaa
     4681 gccttcttgt atacttccaa tacccgcttt cgtgccattt catgattcac tattggacgg
     4741 gggtaagaca ggctctcaaa ttccggcacc cattttcgca catacttcaa ttcgggatcg
     4801 aatttctgca tctgcaaagt aggattaaac acccggaaat aaggcgccgc atcgcagcca
     4861 ctgctggcgg cccattgcca gccgccatta ttggcagcaa aatcaaagtc aaggagcttt
     4921 tcagcgaaat aagcttcccc ccagcgccag tcaatcagca aatgcttgat gagaaaggaa
     4981 gccgtgatca tgcgcaccct gttgtgcata aaaccagtgg cgttcaattc acgcatgccg
     5041 gcatccacaa taggatagcc ggtgcggcct tcgcaccagg ctttgaattc ctcttcatta
     5101 ttgcgccact caatgcgatc gtattctttc ttaaatgcgt gaccatggcc aacatgcgga
     5161 aaatgccata agatcatgtg gtagaattca cgccatatca attcattcag gaagccttcg
     5221 ctcaacggtt gtgcatactt tgccagtttg cgaatgctga gggtgccaaa gcgcaggtgc
     5281 acacccaacc tcgaagtccc ttcgatggaa ggaatatcac gctgctcctt gtacttcgtg
     5341 atgaggtctg cctttatcat tcgagcagga aaaggcttgt cgactgaagt aaaacccatt
     5401 tgctccatcc cgggaattgc tacaggcgcc tgcttataaa agtggtcaaa gtgtttttca
     5461 gttggatatg attccaaatg aaccggcgtc agttttgcct tccatttgcg actgtagggt
     5521 gtgaatactg tata
//
LOCUS       DATIQF010000128         4409 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_260531,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000128 DATIQF010000000
VERSION     DATIQF010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4409
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260531"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1998)
                     /locus_tag="VLL95_02025"
     CDS             complement(<1..1998)
                     /locus_tag="VLL95_02025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37665.1"
                     /translation="MKATTRSSSLLRAILCTYIGRKSSYSLDVSLSRVVLLAFSVLFA
                     GVSSAQIYSHSFGTTAISDYPYNAGPGTLNSNLNSSSWTNNATTWASETGASGVSPDQ
                     ALQMPVVNAGAQMTLSMNVASTYQASITSFSFWAKSGVNGPTGWSMTINGISVGSGSL
                     TPGAAGAATGTINVSNAVNNQTTSLAVVLTLTGGTGGTFAIDDFVLNGSVCLPTPTVS
                     ISPSLAGPICSGTSVTFTPTITNGGTGTLQWKLNGSNISTSNPYTTSTLPVGNNSIVL
                     DYTRTDAGCGATVTSNTVNLTVNPQTTPSVSISNVMPATTFCAGTSVTFTASASNAGT
                     SPLYQWRVNGVNVGSNTTSNTFTSSTLSNNDQVSVVVTSNDPCPTVATATSAAVTVTV
                     NPVLTPSVAVTNVTPSTTVCAGTPVTVTVTPTNGGAAPTYQWRINGVNTGSVTSSNTF
                     TSSTLNNNDQVSVVMTSSYVCPSTPTATATPVIVTVNPNVTATASISASKTNICPAES
                     VTFSSVVVNGGATPVYQWKLNGSNVGTNSPTYTNASLSNGNVVTLEVTSSNACASPKP
                     ALSNSVAMTVNPNLPVSVSISASATSICPGSSVMFTAFPNNGGTSPSYQWRLNGVNVG
                     TNSDTYTTSTLNNNDVVSVVMTSNATPCAVGSPATSNSITIT"
     gene            complement(2387..>4409)
                     /locus_tag="VLL95_02030"
     CDS             complement(2387..>4409)
                     /locus_tag="VLL95_02030"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HSR37666.1"
                     /translation="VDILVQPRPSVTITGSYDCMSGMANLTLTVAGNGPVSGVLQPGN
                     IAFSGTAPGTITIPPMAIAASTTYNVSSLTVGSCSASGAGLGSPLTISTLGTGPAGLW
                     TGAVDTDWFNKCNWANYQVPDNTVDVTIDNSAVRICVIDPDTSPFAATYNDIARSRNI
                     TISNNQLQFASDAGKLSYLYAAGNLTINGATGYLNMEEGGHIDLAGNWTNNRGTLGFD
                     EGLGTIQLMGTTQQTVQTVLGATEDFHNLIINNTLDLAAHNEVVMNSPTTIDGVFTLI
                     DGHVQTTAANLLTVNNPAVNAVVGGAVNSYVNGPMARNTNSAADYNYPVGKPNGPYTT
                     YRPAIIAPATTAPTVYRTEYMVQATNPTALAPRTMLGILNTEYWDISRTSGTADAIVK
                     LNYINPNNNNHWADAGPCFDCNVAIAKTYPTPPPQPPAPPGTPPPTWYFTNYINTSSG
                     FNMTLPETRWNGDNGLIWSKLLDNFGLFTFAYDYNVVLGHPQLPVVKLNAFNATLVGK
                     NGELDWNIAGVSNLESVVLEHSTDGVQYSRLAAFGATLYGFYNYTHAQLSHGKHYYRL
                     RVVDKQRQFILSDVRILEVARARTIIHDLPITVIRTIIPVDIESATDQQVSIRIVTVA
                     GVALSSSAAKLEEGANRIGVQVPYLSQGIYFIQLTTEDGVRRVMKFMKE"
BASE COUNT         1104 a          997 c         1150 g         1158 t
ORIGIN      
        1 tgtgatcgtg atgctgttac tggtagcagg gcttccaacg gcgcaagggg tggcattgga
       61 agtcattacc acgcttacca catcattatt attgagggtg ctggtagtgt acgtatcact
      121 atttgtgccc acattcaccc cgttcaagcg ccactggtag ctggggctcg tgccgccgtt
      181 gttagggaag gctgtaaaca tgaccgaact acccgggcaa atgctggtgg ctgaagcact
      241 gatggaaacc gataccggga ggttcggatt cacggtcatg gcaacactgt tgctcagcgc
      301 aggtttgggg gaagcacagg cattgctgga agtaacctcc aaggttacta cattaccatt
      361 tgacaaggat gcatttgtgt aagttgggct gtttgttcct acgttggaac cattgagctt
      421 ccattggtaa accggagtgg ctccaccgtt caccacaact gaagagaagg tcacactctc
      481 ggccgggcat atgttggttt tggaagcaga aatgctggca gtagcggtca cattcgggtt
      541 aacggtaacg atcaccggag tcgccgtggc tgttggtgtg ctggggcaca catagctgga
      601 ggtcattaca accgatacct ggtcgttatt attgagcgtg gacgatgtga aagtgttgga
      661 agaggtaacc gaaccagtat ttacgccatt gatacgccat tggtaagtgg gagccgcacc
      721 tccgttcgtg ggtgtcacgg tcaccgtcac aggtgttccg gcgcagacag tggtggaggg
      781 cgttacgttg gtaacagcaa ctgagggtgt cagaacagga ttgacagtta cagttactgc
      841 agcactggta gcggtggcaa ctgtaggaca aggatcattg gaagtaacca ctaccgaaac
      901 ctggtcatta ttactaagcg tactcgatgt aaaagtgttg gatgtggtat tgcttcccac
      961 gtttacacca ttcacccgcc attgatacaa aggagaggtg ccggcgtttg aagcgcttgc
     1021 agtaaaggtt acgctggtgc ctgcacaaaa agtggtagcc ggcattacat tactgatcga
     1081 tacggaaggt gttgtctgag gattgacagt aagatttact gtattgctgg ttacagtggc
     1141 accgcaaccc gcatctgttc gggtataatc cagcactatg gagttgttgc caacagggag
     1201 tgtgctggta gtatatggat tcgaggtaga gatattcgag ccattcaatt tccattgcag
     1261 ggtgccagtt cctccattgg taatagtggg tgtaaatgtc actgaagtgc cgctgcatat
     1321 ggggcctgcc aaagagggtg aaatagaaac agttggggtg ggcagacaaa ctgaaccgtt
     1381 caaaacaaaa tcatctatag caaaagtgcc gccagttcca cctgtaaggg tgagtaccac
     1441 cgcgaggctg gtggtctgat tattgacagc attgctaacg ttgatggtgc cggtagcagc
     1501 tcctgctgca ccgggagtca atgaacctga accaaccgag atgccattga tggtcatact
     1561 ccaaccagta gggccattca caccgctttt tgcccaaaat gaaaaactgg taatggaagc
     1621 ctggtaggta ctggccacat tcatcgacaa ggtcatctgg gcgcctgcat ttaccactgg
     1681 catttgcaaa gcctggtcag gcgatacccc tgaagcgccg gtttcggatg cccaggttgt
     1741 ggcattatta gtccaggagg agctattgag gttgctgttt aatgtaccgg gaccagcatt
     1801 ataaggataa tctgagatgg cagtggtacc aaagctgtgg ctgtaaattt gggcggatga
     1861 taccccggcg aaaagcactg aaaaagccaa aagcactacc ctgctcaatg aaacatcgag
     1921 tgagtaagag gactttctgc ctatataggt gcacagaata gcccttaaca gtgaagatga
     1981 ccgtgtagtg gctttcacat gtagaatttt gggtagtaat gggtgagtaa aaataatgat
     2041 taaacatcgt ttgtccacac gttgttcact tttttttgca acatcgtttc atattgattg
     2101 tttcttcggc cagttttgaa cttgattatt gtcaaactgg cacaaaagtc aattgatttt
     2161 caacccgatt atcgatgtta aaactgcgac tcaatggcta ttgtagtgga taactttcca
     2221 ttaaattggg cctaaccccc tcggtttttg ggtgttttga tgctgaaacc gggccaaaaa
     2281 ttgctgtatt gcttccttca agacagctgc cagcaggcca aaaagcggaa agcagattga
     2341 gaacaacctg ctttctttga aatctgcaac ctataaaacc agtatcctat tctttcatga
     2401 atttcatcac tcgccttacg ccatcttccg tggtcagttg tatgaagtaa atgccctgcg
     2461 acaggtaggg cacctgcact ccaatcctgt ttgcgccttc ttcgagtttg gcagcactgc
     2521 tcgatagggc aacacctgcc acggttacaa tccgtatgct cacctgctga tcagtcgcag
     2581 actcaatatc caccggaata attgtcctga tcactgtaat aggaaggtca tggataatgg
     2641 tgcgagcccg tgccacttca aggatgcgaa catcactcaa tataaattgg cgctgtttgt
     2701 ccaccactct caacctgtaa taatgtttac catgagacaa ttgtgcgtgg gtgtagttat
     2761 agaacccata caaggtggct ccgaatgcag caagcctgct gtattgtacc ccatcagtac
     2821 tgtgctcaag caccactgat tcaaggttgc taacaccggc aatgttccag tccaattccc
     2881 cattctttcc cacaagcgtt gcattgaaag cattcaattt gacaacgggc aattgcggat
     2941 gacccaacac gacgttgtaa tcataggcaa aggtgaataa tccgaaatta tccagcagtt
     3001 tgctccagat caatccattg tccccattcc acctcgtttc gggtaaggtc atattgaacc
     3061 ctgaagacgt attgatgtag tttgtaaaat accaggtggg aggaggtgta cccggaggcg
     3121 ccggcggttg tggtggcggt gtagggtagg tttttgcaat ggccacatta cagtcgaagc
     3181 atggccctgc atctgcccag tgattgttgt tattcggatt gatgtaattc aattttacta
     3241 tggcgtcggc ggtgccactt gttctgctga tgtcccaata ttcggtattc agaatgccca
     3301 acatagtacg tggagcgagg gccgtcggat tggtcgcctg aaccatgtat tccgttctgt
     3361 atactgttgg tgccgtggta gctggcgcaa taatggccgg gcgataagtg gtatatggac
     3421 cgttcggttt gccaacaggg tagttgtagt cggcggcact attggtattt ctcgccatgg
     3481 gtccgttcac atagctgttc acagcgccgc ctactacagc attcactgcc gggttattga
     3541 cagtaagcag gttggcagca gtggtctgaa cgtggccgtc aatcaaagtg aacaccccat
     3601 caatggtagt aggactgttc atcaccactt cattatgcgc tgcgaggtca agcgtgttgt
     3661 tgatgatcag gttgtggaag tcttctgtgg cgcccaatac tgtttgtacg gtttgctgcg
     3721 tggtgcccat gagttgtatg gtgcccaggc cttcatcaaa tcctagtgta cctcggttgt
     3781 tggtccagtt tccggcaaga tctatatggc cgccttcttc catgttcaaa tagccagtgg
     3841 caccattgat agtcaggttg ccagcagcat ataagtatga aagcttgcca gcgtctgaag
     3901 caaactgcaa ttgattgttg ctgatagtga tgtttctgga cctggctata tcattatagg
     3961 tagctgcaaa aggtgaagta tcaggatcta tcacacaaat tcgaacagca gagttgtcaa
     4021 tcgttacatc cactgtattg tctggtacct ggtagttggc ccagttgcac ttattgaacc
     4081 agtcagtatc gacggcgcct gtccaaaggc cggcaggacc agtgccaagc gttgagattg
     4141 ttaacggact tcccaaacca gcgcccgaag cggaacaact gcctactgta agtgaagaga
     4201 cattataagt agtagaggca gcgatagcca ttggaggaat ggtaattgta cccggtgcag
     4261 ttccactgaa agcaatattg cccggttgca agacacctga tacaggtcca ttccccgcca
     4321 cagtcaatgt gaggtttgcc atgccactca tacaatcata gctgcccgta atagtgacag
     4381 atggccgtgg ctgcactaaa atatcgacc
//
LOCUS       DATIQF010000129         2021 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_93224, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000129 DATIQF010000000
VERSION     DATIQF010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93224"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..421
                     /locus_tag="VLL95_02035"
     CDS             <1..421
                     /locus_tag="VLL95_02035"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HSR37667.1"
                     /translation="NRAAELTTASGLKFAYHNHAFEFEKFGDTSGYDLLLNETDKNMV
                     KMELDLYWVYNAGKDPFELFKQHPGRFVMWHVKDMDKNDKNKQTEVGNGSIDFKAIFK
                     KAKQSGLEYFFVEQENYDVSPYDSIEKSIRYVKANLV"
     gene            complement(498..1205)
                     /locus_tag="VLL95_02040"
     CDS             complement(498..1205)
                     /locus_tag="VLL95_02040"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HSR37668.1"
                     /translation="MQVFIKAALISSALTVTTGLMAQQEKGFKPLFDGKTTQGWHTYN
                     KTGIGAAWKVEDGTLHFDPAARVQEQGKWTGGGDIVTNEEYENFHLKLEWKVAPGGNS
                     GIMFYVKEDPSLPYSFHSGPEMQVLDNAAHPDAKIFKHRAGDLYDLIPCSKETVKPAG
                     EWNLAEIIANKGSIELRLNGETVVQTSYGDEAWKKLVAGSKFKSMPAFGTFSKGRICL
                     QDHGDKVWYRHIMIKAL"
     gene            complement(1225..1617)
                     /locus_tag="VLL95_02045"
     CDS             complement(1225..1617)
                     /locus_tag="VLL95_02045"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HSR37669.1"
                     /translation="MKKTLLAFAAVTLLFACGGETKSDSNAEAPAAEKKESLSDNPDY
                     KKGLELVAKSDCLTCHKVSEASTGPAYKDVAARYGNAADTTIERMANHIIKGGSGQWG
                     AIPMTPHPAVSVDDAKAMVKYVLLLNNQ"
     gene            complement(1651..>2021)
                     /locus_tag="VLL95_02050"
     CDS             complement(1651..>2021)
                     /locus_tag="VLL95_02050"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HSR37670.1"
                     /translation="SYIDHYHERIKAFHVKDAEFRPNGKQGAFGGYQNWANRAGRYRS
                     LGDGQVYFKRIFSKLTQYGYDGWAVMEWECVLKHPEDGAREGAAFIRDHIIRVTERAF
                     DDFAGSGINAQLNRTILGLD"
BASE COUNT          474 a          510 c          507 g          530 t
ORIGIN      
        1 gaacagggcc gcggaactca ccactgcaag tggattgaaa ttcgcttacc acaaccatgc
       61 tttcgaattc gaaaaattcg gcgacaccag tgggtacgac ctcttactga acgaaactga
      121 taagaacatg gtgaagatgg aactggattt gtactgggtg tacaatgccg gtaaagaccc
      181 gttcgaattg ttcaagcaac atcccggccg ctttgtaatg tggcacgtaa aagacatgga
      241 caagaatgac aaaaacaaac agaccgaagt gggcaatggc agcatcgatt tcaaagccat
      301 tttcaaaaag gccaaacagt cggggctgga atactttttc gtagagcagg agaattatga
      361 tgtgtcgcct tacgacagca ttgagaagag tatcaggtac gtgaaggcca acctggtctg
      421 accacaacaa gcgcaaccaa caaaaagaga cataccaaaa ggcatgtctc tttttttatt
      481 gaaaaggctc caatctttta caaggccttg atcatgatat ggcgatacca aactttgtcg
      541 ccatggtcct gcaggcaaat gcggcctttg ctaaaggtgc cgaaggcagg catgcttttg
      601 aatttgctgc cggccaccag ttttttccag gcttcatcgc catagctggt ttgcaccacg
      661 gtttcgccat tcaaccgcaa ttcaatgctg cctttgttgg caatgatttc agccaggttc
      721 cattcgccgg caggcttcac cgtttccttg ctgcagggaa tcaggtcgta caggtcgccg
      781 gcccggtgct tgaaaatttt ggcatcggga tgggccgcat tgtcgagcac ctgcatttca
      841 ggacccgaat gaaatgaata tggcagcgag ggatcttcct ttacgtaaaa catgataccg
      901 ctgttgccgc cgggcgccac tttccattcc agtttcaggt gaaaattctc atactcttca
      961 ttggttacta tgtcgccgcc cccggtccat tttccctgct cctgcaccct ggcggcagga
     1021 tcaaaatgga gcgtgccatc ttccactttc caggcggcac cgatacctgt tttgttgtag
     1081 gtatgccatc cctgggtggt ctttccatcg aacaaaggct taaaaccttt ttcctgctgg
     1141 gccatcaatc cggttgtaac ggttaaggca ctgctgatga gtgccgcttt tatgaatact
     1201 tgcatgttgg tgcttccgca ggttttattg gttattgaga agcaacacgt atttcaccat
     1261 ggctttggcg tcatccaccg atacagcggg gtgtggcgtc atcgggatgg ctccccactg
     1321 cccggagcct cctttgatga tgtgattggc catgcgttca atcgtggtat ccgccgcatt
     1381 gccatagcgg gctgccacat ccttgtaggc aggaccggta gatgcttcgc tcactttgtg
     1441 gcaggtgagg cagtctgatt tggccacgag ttccagtcct ttcttgtaat caggattgtc
     1501 ggaaaggctt tccttttttt cagcagcagg tgcttcggcg ttgctgtcag attttgtttc
     1561 gccaccacag gcaaacagga gggtaacagc ggcaaaggcc agtaatgttt ttttcatatc
     1621 aggtatttta ttgtttgaaa ggttgaagaa ttaatccaat cccaggatgg tgcgattcag
     1681 ttgggcgttg atgccgctgc cggcaaaatc gtcgaatgct ctttccgtga cgcggatgat
     1741 gtgatcacga atgaaggccg cgccttcacg ggctccgtct tcgggatgct tgagcacaca
     1801 ctcccactcc atcaccgccc agccatcgta gccgtactgg gtaagcttgc tgaaaatgcg
     1861 tttgaaatac acctgtccat cacccaatga acgatagcgg ccggcacggt tggcccagtt
     1921 ttggtacccg ccaaaagcac cctgttttcc gttgggcctg aactccgcat ccttcacatg
     1981 aaatgccttg atgcgttcgt ggtaatgatc gatatagctc a
//
LOCUS       DATIQF010000130         3921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_290896,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000130 DATIQF010000000
VERSION     DATIQF010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3921
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290896"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..276
                     /locus_tag="VLL95_02055"
     CDS             <1..276
                     /locus_tag="VLL95_02055"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: protein motif:HMM:NF024897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HSR37671.1"
                     /translation="KIPIAHGEGRYFADDSTLDSLEANNQVIYRYATENGDINADANP
                     NGAMRNIAGICNSNRNVFGMMPHPERACSTALGNTDGMKVFHELGLV"
     gene            475..927
                     /locus_tag="VLL95_02060"
     CDS             475..927
                     /locus_tag="VLL95_02060"
                     /inference="COORDINATES: protein motif:HMM:NF022853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD
                     domain-containing protein"
                     /protein_id="HSR37672.1"
                     /translation="MRKATLALAFALMSIAGMAQIKNPVKWTFSAKKLDATTYELHLT
                     AIMDPTWHIYTIDHTGDIGVPTSIRFKSNPLGTYSGKPKVVGKAVSLKDPSTGEMVKF
                     YEKSVNFVQIVKLKAPVKTNIAGTVEFMACDDKQCLPPTEKEFSIPLQ"
     gene            955..2934
                     /locus_tag="VLL95_02065"
     CDS             955..2934
                     /locus_tag="VLL95_02065"
                     /inference="COORDINATES: protein motif:HMM:NF014713.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HSR37673.1"
                     /translation="MKRLLTLMLALLCMQVFGQNSQYVKFNTSFERSSDTTGFVVIKA
                     AMSEKFQLFSIKKRGEDDPFITAVQFDSTSAKMRLATDTTTELGTLLAVPSGSGSHYR
                     MFADSVTFKIPVHFAADFAGNISGSIAWLGTLPGDEFPSGEESFSVKVETAAATADGS
                     EPSAAPPTGQEEKSLWRIFLEGFLAGLGAFIMPCIYAMVPVTVSFFTKRSKTRKQGIK
                     NAAIYAGSIIAIFTLIGFLITIIFGKGALNDMASSAWFNVGVFLLFMVFGISFLGAFE
                     ITLPASWSNKIDSKSGLNSYSGIFFLALTLVIVSFSCTVPFIGALTVLIAKGSFWAPL
                     VGFFAFSLALALPFAIFTVFPSLLNNMAKSGGWLNTIKVSLGFLELALALKFLSSADL
                     AYHWGILDREVYLSLWIVIFGLMGFYLLGKLKFHHDDDLPRNEYGHPYLTVTRLFFAI
                     ATLSFTVYMIPGLWGAPLNGISAWLPEMKTQDFKLQSGNSLSAPAASLAGPQPKKYTD
                     LLESEIPGVNSFFDYDEALAAAKALKKPLMIDFTGHSCANCRKMEREVLSNPEVMQKL
                     QNDFVVVSLYVDDKFQLPESEWTKSMLDGKLLKRMGEKNLDFEVALTNNNAQPYYVFV
                     DNDGKLLVPEGYGYDPDIQKFLKHLDRIKAKFDGE"
     gene            complement(3206..3790)
                     /locus_tag="VLL95_02070"
     CDS             complement(3206..3790)
                     /locus_tag="VLL95_02070"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSR37674.1"
                     /translation="MMASYANRSDSQLIKAYNAGDAAALEELVNRYKDRVYTSIFFLV
                     KDKYLAEDLFQDVFIKIIDTIRNNRYNDEGKFVSWAMRIAHNLCVDHFRRVKRSPSII
                     NAEGKDVFEWLHFSDENAEGGMMRRQSHDRVQRMLELLPEEQKEVIVLRHYGNLSFKE
                     IAEVTNCSINTALGRMRYGLINLRKMMLEKQISL"
BASE COUNT          994 a          976 c          930 g         1021 t
ORIGIN      
        1 aaaataccca tcgcccacgg agaaggccgc tattttgccg acgacagcac cctcgattcc
       61 ctggaagcca acaaccaggt gatctatcga tatgctacag aaaatggtga tatcaatgct
      121 gatgccaatc ccaatggggc catgcgcaat attgccggca tttgcaacag caaccgaaat
      181 gtatttggta tgatgcctca ccctgaaagg gcttgctcaa cggcgctggg gaatacggac
      241 ggcatgaagg tatttcatga actaggcctc gtttaggatc tgcgttgttg aataatcgat
      301 ccctttggtg atgtaaatta cttgctcagc caaaggggtt tttcattttt gcacaacaaa
      361 tccttaattg tcctttgaaa tggaaggttt accagtttta aatccgccat tcgaaggcta
      421 taaacttact ttgcattgta tatcaagttg aacactacac gttactttat caatatgaga
      481 aaagcaaccc tggcactggc atttgcattg atgagcatcg ccggtatggc acaaatcaag
      541 aacccggtaa aatggacctt cagcgccaag aagctggatg ccactaccta tgaattgcat
      601 ttgaccgcca tcatggatcc tacgtggcac atctacacca tcgaccacac cggtgacatc
      661 ggggtgccta ccagcatcag gttcaaatcc aatccgctgg gaacctacag tggcaagcct
      721 aaagtagtgg gcaaggccgt gtcgctgaaa gatccatcca ctggtgagat ggtcaagttt
      781 tatgaaaagt ctgtgaattt tgtgcaaatc gtcaaattga aagcgccggt caaaacgaat
      841 attgccggta cggttgaatt catggcctgc gacgacaagc aatgcctgcc ccccactgaa
      901 aaagagttca gcattccgct ccaataacct gctttctaac catccacctt tggcatgaaa
      961 cgactgctta ccttgatgct tgccctgctg tgtatgcagg tttttgggca gaatagccag
     1021 tacgtaaaat tcaacaccag ttttgaacgc agttcggata cgaccggatt tgtcgtcatc
     1081 aaagctgcca tgtcagagaa attccagttg ttttccataa agaagcgggg cgaagatgat
     1141 ccgttcatca cagcggttca attcgacagt acctccgcca aaatgcgact ggccacagat
     1201 actactaccg aactgggtac gctgctggcg gttccttcgg gcagtggcag ccactaccgc
     1261 atgtttgcgg atagtgtgac atttaagatc ccggttcact ttgccgccga cttcgccgga
     1321 aacatcagcg gatccattgc ctggctggga accttgccag gggatgaatt tcccagcggt
     1381 gaagaaagct tttcggtgaa ggtggaaaca gctgcggcaa cggcagatgg cagcgagcca
     1441 tcagcagcgc cccccacagg gcaggaagaa aaatcgctgt ggcgcatttt cctcgaaggc
     1501 ttcctcgcag gtttgggcgc cttcatcatg ccttgtattt atgccatggt gcctgttacc
     1561 gtcagtttct ttacaaagcg aagcaaaacc cgcaagcagg gcatcaagaa cgccgccatt
     1621 tacgcaggct ctatcattgc catttttacg cttatcgggt ttcttatcac catcatattc
     1681 ggcaaaggcg ctttgaacga tatggccagc tcagcctggt tcaatgtggg cgtattcctg
     1741 ttgttcatgg tgttcggcat ctcgttcctg ggtgcgtttg agatcaccct tccggcgagt
     1801 tggagcaata agatcgacag caagagcgga ttgaacagtt actcgggcat tttcttttta
     1861 gcgcttaccc tggtgatcgt ttcattcagt tgtaccgttc cttttattgg tgcccttacg
     1921 gtgcttattg ccaaaggaag tttctgggca ccactggtag gtttctttgc gttctctttg
     1981 gcgctggccc tgccctttgc catcttcact gtttttccca gcctcctcaa caatatggcc
     2041 aaaagcggcg gctggctcaa taccatcaag gtttcactcg gtttcctcga actcgcattg
     2101 gccctcaaat tcctgagcag cgccgatctc gcttaccatt ggggcatact cgaccgggaa
     2161 gtttacctga gcctgtggat cgtgatcttt ggattgatgg gattctacct gctcggaaag
     2221 ttgaaatttc accacgatga cgacctgccg cggaatgaat atggccaccc ctacctgacc
     2281 gttacacggt tgttctttgc catagccacg ctttccttta cagtttacat gattccgggt
     2341 ttgtggggcg ctccgcttaa tggcatcagc gcctggctgc ccgaaatgaa aacacaggac
     2401 ttcaaacttc agtcgggaaa cagcctgtct gctcctgctg caagcctggc tggcccacaa
     2461 cccaaaaaat ataccgacct gctggaaagc gaaatacccg gcgtcaatag tttctttgat
     2521 tatgacgagg cattggcagc tgccaaagcc ctgaaaaaac ccctgatgat cgacttcacc
     2581 ggccacagct gcgccaactg ccgcaagatg gaacgcgaag tgctgagcaa cccggaagtg
     2641 atgcaaaaac tgcagaatga ttttgtagtg gtttcactgt atgtagatga taagtttcag
     2701 ttgcctgaat cggaatggac aaagtcaatg ctggatggca aattgctcaa acgcatgggt
     2761 gaaaagaacc tcgattttga agtagcgctg accaacaaca acgcccagcc ttactatgtg
     2821 tttgtagaca acgacggcaa actgctggtg ccggaaggct atggttatga ccctgacatc
     2881 cagaagttcc tgaaacatct tgacaggatc aaagccaaat ttgatggcga ataactcgtt
     2941 tgaactgacc taaataagaa agccccgaag aatattcggg gcttttgctt tgtcaatttg
     3001 gttgtcactc tgcaatagcc gtctgcgcat acattggcag gcgaatcgtt aagcccttgc
     3061 agttggaatc acagagtgac agttatgttc gtcaatccta actgtctggt ttcagaacgc
     3121 aattttaaag aatgttcgta ttccgaaaat gctaaaaaac acacaacgta ttgaacaatg
     3181 ttcaaaacag tttcacgacc ccttattaca gtgaaatttg cttctccagc atcattttgc
     3241 gcaggttgat caggccataa cgcatgcggc ccaaagctgt gttgatgctg caattggtca
     3301 cctcggcaat ctccttgaaa ctgaggttgc cgtaatgccg caacacaatc acttctttct
     3361 gttcctccgg cagcaattcg agcatgcgct gcacccggtc gtggctctgg cgccgcatca
     3421 tgccgccttc ggcgttctcg tccgaaaaat gcagccactc gaacacatcc ttgccttcgg
     3481 cattgatgat ggagggcgac cttttgacgc ggcggaaatg atcgacacac aagttgtgcg
     3541 caatgcgcat agcccaactc acgaacttgc cctcgtcgtt gtacctgttg ttgcggatgg
     3601 tatcaatgat cttgatgaac acatcctgga acaggtcttc tgccaggtac ttgtctttta
     3661 cgaggaaaaa aatggaagtg taaaccctgt ctttgtagcg atttaccaat tcttccaatg
     3721 cggcagcgtc gccggcattg tatgccttaa taagctgcga atctgaacga tttgcgtaag
     3781 atgccatcat ttctcccttt aggtgtggtg taacagataa tagataccgg gtagaaatga
     3841 atctataggc gtagaattaa ttggttgaaa gcaaattagc cagcttggtt gggaacattt
     3901 tgtttgtgct gcaaaaatta t
//
LOCUS       DATIQF010000131         3265 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_17339, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000131 DATIQF010000000
VERSION     DATIQF010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3265
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17339"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1135)
                     /locus_tag="VLL95_02075"
     CDS             complement(<1..1135)
                     /locus_tag="VLL95_02075"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF037667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HSR37675.1"
                     /translation="MKKYALLATIGTIVVTALLAQSSAVTKPSSVTLPISTQSDYQPT
                     AEKKFDLRHVKLEVKFDYQQRRMAGKAWLTLAPHFYPQQVLALDAKGMFIHKVAIVTG
                     ATQKPLNFDYQDSLQLKITLDRSYTRSEPFNIYIEYTARPDEIKTKGSAAITNAKGLY
                     FINPDGKDSTKPIQIWTQGETEATSVWCPIIDKPNQKTTQEIAMTVPAKYVSLSNGVL
                     VKQVNNNDGTRTDHWKMDQPHSPYLFFMGVGDFAVIKDKYKNIPVDYYVEKQEAPLAK
                     SIFGDTPAMMEYFSKLVGVEYPWPKYAQMVGRDYVSGAMENTSSTLHGSAAYQNGRQL
                     KDGNSWEIVVAHELFHQWFGDLATAESWSNLTVNESFADYSEYL"
     gene            1262..2599
                     /locus_tag="VLL95_02080"
     CDS             1262..2599
                     /locus_tag="VLL95_02080"
                     /inference="COORDINATES: protein motif:HMM:NF026121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4476 domain-containing protein"
                     /protein_id="HSR37676.1"
                     /translation="MGRFLTAIVMTLLLMCTKGQAQREHFVYLQTENMTPFYIKMNGK
                     TISSTYSGYLILGKLKDSIYPIKLGMLGVDEVQDYGLKVDGRNAGYLVKKLGDRGWGI
                     VDLQTNEEQVSMEWSSAIAAETARQEFMAAEQKRVADSIANASAAVAVADTAAANPAV
                     AVAAAVVADTVAKSEAKPAADTASRIVESPKNEQQRLQDSIANVIAEKEKELKALQAM
                     LAGTAGAAVVAGKNADSGKTANSAAEKTAGGLATGAAVAAGAGVVSAVTGDGNKDKSK
                     AASDSTTQTNAPPPSADSSHANAAAVAVVADSVKAIAEPVVKADTATATVDSAGAKKA
                     TTDSVATAPKLQREPCVDVLGREEVEALINKTASIADGDEIIALYKKAFKEKCVSTSN
                     LKKICNAMASDVTRYRILEAAYPHCLDFYAFPDLESLLKDSYYITKFKALVQQ"
     gene            2605..>3265
                     /gene="truA"
                     /locus_tag="VLL95_02085"
     CDS             2605..>3265
                     /gene="truA"
                     /locus_tag="VLL95_02085"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HSR37677.1"
                     /translation="MRYLFEVSYKGTNYAGFQVQENAITIQWQLEQVLRTFYKQEIAL
                     TGSSRTDAGVHALQNFFHADIAELDFDPKQVYNLNAMLPPDIVLKSMRPIPDDLHCRF
                     HASHRLYQYHLYQTKNPFLNDRAWYFPYPLDLEKLNEAAALLMQYTDFTSFSKRNTQT
                     KTMLCNIQESHWVQEGEEFVYTVKANRFLRGMVRGLVGTMLQYGRGKISLPEFISIIE
                     AK"
BASE COUNT          816 a          774 c          884 g          791 t
ORIGIN      
        1 acaggtattc gctgtagtcg gcaaagctct cgttcacggt aaggttgctc cagctttcag
       61 cagtggccag gtcgccaaac cattgatgga agagttcgtg tgctactaca atttcccagc
      121 tattgccgtc cttcaactgt cggccatttt ggtaggcagc ggagccatgc aaggtagatg
      181 acgtgttttc catcgcgccg ctcacataat cgcgacccac catttgcgca tacttcggcc
      241 agggatattc cacgcccacc agcttgctga aatattccat catggctggg gtgtcgccaa
      301 aaatggattt ggcaaggggc gcttcctgtt tttctacgta ataatcaacc ggtatgtttt
      361 tgtatttgtc tttgatcact gcaaaatcgc ctacgcccat aaaaaacagg taaggcgaat
      421 gaggctgatc catcttccaa tgatcagtgc gggtgccgtc gttgttgttt acctgtttta
      481 ccaatacgcc attgctcagc gacacatatt tggccggaac ggtcatggca atttcctggg
      541 tggtcttctg gttgggcttg tcgatgatag ggcaccatac actggtggct tcggtttcgc
      601 cctgcgtcca aatctgtatg ggtttggtgc tgtctttccc gtcggggttg atgaagtaaa
      661 gccccttggc attggtgatg gccgcactgc ctttggtctt tatttcgtcg gggcgtgcag
      721 tatactcgat gtaaatgttg aaaggctcgc tgcgggtata gcttctatcg agagtgatct
      781 ttagttgcag gctgtcctgg tagtcgaaat tcagcggttt ttgcgtagcg ccggtcacga
      841 tggctacttt atggataaac atccctttcg catctaatgc cagtacttgt tggggataga
      901 aatggggcgc cagggtgagc caggctttgc ccgccatgcg gcgctgttgg tagtcgaatt
      961 tcacttccag ctttacatgc ctgaggtcga atttcttttc ggcagtaggc tggtagtcag
     1021 attgggtgga aatggggagg gtgacagagg agggtttggt aacggcggaa gattgggcaa
     1081 gcagagcggt caccacaatg gtaccaatgg tggccagcag cgcatatttt ttcattggag
     1141 tcaaaattgt tggcgcaaaa gtatcccggc aggtaccttg catttgttaa tatttaagaa
     1201 ctaccgaaga ggccaaagcc ttgatttatt gtaggtttgc ccaagcgtat aagattcaat
     1261 tatgggaaga tttctgacag cgatcgtgat gactttgttg ctgatgtgta caaagggcca
     1321 ggctcagcgt gaacactttg tatacctgca aacggaaaac atgacgccct tctatataaa
     1381 aatgaatggc aaaaccattt cctccaccta ctccggttac ctgattttgg gtaaactgaa
     1441 agacagcatc tatcccatta aactgggcat gctgggggtg gatgaagtac aggattatgg
     1501 tttgaaagtg gatggccgca atgccgggta cctggtgaag aaactgggcg acaggggttg
     1561 gggcatcgta gacctgcaaa ccaatgaaga gcaggtaagc atggaatggt ctagtgccat
     1621 tgcggctgaa acagcaagac aggagtttat ggcggccgag cagaaacggg tggccgatag
     1681 cattgccaat gcttctgccg ccgtggcggt ggccgatact gctgcggcga atcctgcagt
     1741 ggccgtagcc gccgctgttg tggcagatac tgtagccaaa tccgaagcaa agcctgccgc
     1801 cgatacggct tcccggatag tggaaagccc caaaaacgaa caacaacgcc tgcaggacag
     1861 cattgccaat gtgatagccg aaaaagagaa agaattgaaa gcgctgcagg ccatgctggc
     1921 aggtacagca ggcgctgccg tggtggccgg taagaacgcg gactcaggca aaacagcaaa
     1981 cagcgctgct gaaaaaacag ccggcgggtt ggcaacgggt gctgcagtgg cggctggtgc
     2041 cggagtggtg agtgctgtga ccggcgatgg aaacaaagac aaatcaaaag cggcatcaga
     2101 tagtaccacc caaaccaatg cgcctcctcc gtcagccgat tccagccatg ccaatgcagc
     2161 agcggtggct gtggtggctg attctgtcaa agccattgcc gaacctgtgg ttaaagccga
     2221 tactgcgaca gccactgtgg acagcgcagg tgctaaaaaa gcgaccactg attccgtagc
     2281 gaccgctccg aaactgcagc gggaaccctg tgtggatgtg ttgggaaggg aagaagtgga
     2341 agctttgatc aataagactg cctccattgc cgatggcgat gaaatcattg cactgtacaa
     2401 aaaagcattc aaggaaaaat gcgtgagcac ttccaacctc aagaagatct gtaacgcgat
     2461 ggccagtgat gttacccgct accggatact ggaagcggcg tatccgcatt gtctcgactt
     2521 ttacgctttt cccgacctgg aatccttgct gaaagattcc tattacatca cgaagtttaa
     2581 agcgctggtg cagcaatagg ccgcatgcgt tacctgtttg aagtctcata caagggcacc
     2641 aactacgctg gcttccaggt gcaggaaaat gccattacca tccaatggca attggagcag
     2701 gtgcttcgta cgttttacaa acaggaaata gcactgaccg gttcttcgcg taccgatgcc
     2761 ggcgtacatg ccttgcagaa tttttttcac gccgatatag cggaacttga ttttgatccc
     2821 aaacaggtgt acaacctcaa tgccatgttg ccgccggata tcgtgttgaa aagcatgcgc
     2881 ccgatccccg atgatttgca ttgccgcttt catgcctcgc atcggctgta ccaataccat
     2941 ttgtaccaaa ccaagaatcc ttttctcaac gacagggcct ggtattttcc gtacccgctg
     3001 gatcttgaaa aattgaacga agcagccgcc ctgctgatgc aatacaccga ttttaccagt
     3061 ttctcaaaac gcaacaccca aaccaaaacg atgctgtgca acatacagga aagccattgg
     3121 gtgcaggaag gcgaagaatt tgtttatacc gtaaaagcca accgcttttt gcggggcatg
     3181 gtacgtggtt tggtaggcac tatgttgcaa tatggccggg gcaaaatatc actgccggaa
     3241 ttcatcagca tcattgaagc aaagg
//
LOCUS       DATIQF010000132         1608 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_275789,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000132 DATIQF010000000
VERSION     DATIQF010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1608
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275789"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(113..751)
                     /locus_tag="VLL95_02090"
     CDS             complement(113..751)
                     /locus_tag="VLL95_02090"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HSR37678.1"
                     /translation="MRSLFLYITVGIAVLLGSLHAQWTGFPPSVPNNYPASTAWLVES
                     DSRLTISGKSNFGGINCDNEKVKKADTILICRTPVGDSFACKGRFYLNIVDFSCHNYF
                     YTYNLRKTLKMDQYPHMSVRLVRLDRALPLQEGAYCRANSVVEITLAGVTRQFEVPVE
                     FSQQTNGESWLKGSRMFRLQDFNLKSPVKYGGLIKVKNEFVVQFQLSMKRIG"
     gene            complement(837..>1608)
                     /locus_tag="VLL95_02095"
     CDS             complement(837..>1608)
                     /locus_tag="VLL95_02095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37679.1"
                     /translation="QPEAINSAGVVPTKRTPSIFAKAAYDKQISEKLRVRLSGSIYHN
                     PNIQRNTLFAGDRNGSNYVGVMDPQLSRSSVSPFYYVPISLGTSPSNPATQSGPFFTS
                     GRLDPGMSNRITAISIDPFIKYGGLELYAGYQNLSGSVYADTSKGAWNKRSFNQMYGE
                     VVYRFFNDHVYVGARYVSVNGEPNGVRYSSSDAGKTAGQQAEINSNRFAIAAGYFPIK
                     NLLLKLEYVKQTYNDYPYLDIRNKGQFDGLTVQAIVGF"
BASE COUNT          446 a          361 c          404 g          397 t
ORIGIN      
        1 tttaatcagg ccgccataca agaaggttga ttgtaagcat caaccttctc atttaagaat
       61 gcaatgatat tgttggggga aggcacgcca caaaaataag tggcagcgct gctcagccga
      121 tgcgtttcat ggatagctgg aattggacca cgaattcatt cttcacttta atcaggccgc
      181 catacttcac cggcgatttc aggttgaaat cctgcaggcg gaacattcgt gatcctttga
      241 gccagctttc gccattggtt tgctggctga attcaaccgg tacttcaaac tgacgcgtca
      301 ctcctgccag cgtgatctct accacgctgt tggcccggca gtaagcacct tcctgaagcg
      361 gcaaagccct gtcgagtcgc accaggcgca ccgacatgtg cgggtactgg tccatcttca
      421 atgtcttccg caggttgtac gtgtagaaat aattgtgaca ggaaaagtcg acaatgttga
      481 ggtagaaacg ccccttgcag gcaaagctgt cgccgacggg ggtacggcaa atcaggatgg
      541 tgtcagcctt cttcactttt tcattgtcgc agttgatgcc tccgaaattg gatttgccac
      601 taatggtaag gcggctgtcg ctttctacca gccaggcagt gctggcagga tagttgttgg
      661 gaacactggg tggaaagcct gtccattgcg catgcaggct gcccagcagc accgctatac
      721 caacagtgat atacaaaaac aagcttctca tgaaaatgga aaatacagaa taggcagtta
      781 gggagataaa aaaagggtca gcttagaaaa gccgacccgt aaacggaatc aatccatcag
      841 aagcccacaa tagcttgtac agtcaatccg tcaaattgtc ctttgttcct gatgtccagg
      901 taaggataat cgttgtatgt ctgttttacg tattcaagtt tcaggagcag gtttttaatg
      961 gggaagtagc ctgctgcaat ggcgaaacgg ttagagttga tctcagcttg ctgacctgca
     1021 gtttttccag cgtcagagct gctgtaccta acaccattgg gttcaccatt cacgcttaca
     1081 tagcgagcac caacatatac atgatcgttg aagaaacggt ataccacttc accatacatc
     1141 tggttaaagc tacgcttgtt ccaggcacct ttggaagtat cagcatatac tgaaccactc
     1201 agattttgat agccggcata cagttccaaa ccaccatact taatgaaagg atcgattgaa
     1261 atagcggtga tgcggttaga cataccagga tctaaacgac cagaggtaaa gaaaggacca
     1321 gattgggtag cggggttgga aggagaagta cccagagaaa tgggaacata gtagaaagga
     1381 gatactgaac ttctggaaag ttgaggatcc atcacaccta catagtttga accgttacgg
     1441 tcgccagcaa acagggtgtt acgctgaata tttgggttgt ggtaaattga accagacaaa
     1501 cgaacgcgga gtttttcact gatttgcttg tcgtaagcag cttttgcaaa aatggaaggc
     1561 gtacgcttgg tgggaaccac gccggcagag ttaatggctt caggttgc
//
LOCUS       DATIQF010000133         2080 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_199846,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000133 DATIQF010000000
VERSION     DATIQF010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2080
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199846"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..316)
                     /locus_tag="VLL95_02100"
     CDS             complement(<1..316)
                     /locus_tag="VLL95_02100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37680.1"
                     /translation="MNHSTWRQRLTYISHFIPVRLYLLLFLAASAIALWWVNRQYPAE
                     PSLGGSLLQLLVKASIAAALLLLLLSFLSVFIPFAWFAWKVYRRQVQVAIDNAEEAGK
                     KEI"
     gene            514..1416
                     /locus_tag="VLL95_02105"
     CDS             514..1416
                     /locus_tag="VLL95_02105"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSR37681.1"
                     /translation="MSLSIIHYTACPVCEDKNNREVMVCKDFTVSHQTFPILECGACS
                     TRFTQHVPAQESIGPYYQSETYISYSDTSKGLISKLYKLARRYTLQKKVKNVKRVSGL
                     DKGKLLDIGCGTGAFLHAMQTAGWQVTGLEPDSGARSLAFQLHGLQVQDSEHLYSLPT
                     GEYDVITLWHVLEHIHDLHGYMQQIVRLLKPNGTVIIAVSNYTSKDAQHYQQFWAAYD
                     VPRHLYHFTPRSMAHLAGTHLLKVQAIQPMWLDAFYIALLSEQYQHGRQRLLPAFVQG
                     LKSVIHAYTHAGTCSSQVYVLKKA"
     gene            1501..>2080
                     /locus_tag="VLL95_02110"
     CDS             1501..>2080
                     /locus_tag="VLL95_02110"
                     /inference="COORDINATES: protein motif:HMM:NF013122.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HSR37682.1"
                     /translation="MFAIVDIETTGGSAGNSGITEIAIVLHNGREVEGKFATLINPQQ
                     KIPRYITALTGISDYMVADAPTFEQIADRIFNLLQHRVFVAHNVNFDYSFVLNHLVEA
                     GFQWQARKLCTVRYARKVMPGHPSYHTGSDDRWRAANWINEYTLKNVHAELSAEAVFA
                     AEVQVDEPLSESEAKTQATELSSLRDWELQIRR"
BASE COUNT          527 a          546 c          550 g          457 t
ORIGIN      
        1 cgatttcctt tttgccggct tcttcggcat tgtcaatagc tacctgcacc tgccggcggt
       61 acactttcca ggcaaaccaa gcaaacggaa tgaatacgct gaggaaacta agcagcaaca
      121 acaggagcgc cgctgcaatg gacgccttca ccaacaattg gagcaaacta ccccccaggg
      181 atggttcggc aggatactgc ctgttgaccc accacaatgc aatggcggag gctgccagaa
      241 acagcagcag gtaaagccgg accgggatga agtgagatat gtaggtgagg cgttgccgcc
      301 acgtagaatg gttcatgatg taagggacct gcaaattaac gagataccca atgcaaaaga
      361 tgccgtgtag tgggtagttg catttaagga aaccataaat gatggcctga caagaaagca
      421 cggtgcaggg ccaaccatgg cagggaacga aagccaatga tggcaacggg ccggcgggtt
      481 caacttaagt ccacttccct acatttgcgc accatgtcgc tgtccatcat ccattatact
      541 gcctgcccgg tttgcgaaga caagaataac cgggaggtaa tggtctgcaa agactttaca
      601 gtgagtcacc agacttttcc cattttggag tgtggggcct gttccacccg cttcacgcag
      661 catgtgccgg cacaggaatc catcggtccc tattaccagt cggaaacgta catctcctac
      721 agcgatacca gcaaaggtct catcagcaaa ttgtacaaac tggcccggcg ttacacgctt
      781 cagaagaaag taaagaacgt aaaacgtgtc agtggactcg acaaaggaaa gctgttggat
      841 attggttgtg gtaccggcgc cttcctgcac gccatgcaaa cggcaggctg gcaggtaacc
      901 gggttggaac cagacagtgg tgccaggagc ctcgcttttc aactgcatgg tttgcaggtg
      961 caagacagcg agcatctcta ttcattgcca acaggcgagt acgatgtcat taccctctgg
     1021 catgtgctgg agcatattca tgatttgcat ggctatatgc agcagatagt ccggctgttg
     1081 aaacctaatg gcacggtcat cattgctgtt tccaattata ccagtaaaga cgcccagcat
     1141 taccagcaat tttgggcggc ctacgatgtg ccccggcacc tgtatcattt cactcccagg
     1201 agcatggcac acctggccgg tacccacctg ttgaaagtgc aggccatcca gcccatgtgg
     1261 ctcgatgcat tctacattgc cttgctgagt gagcaatacc aacatgggcg ccagcgactg
     1321 ttgcctgcct ttgtgcaggg tttgaaaagt gtcatccatg cctataccca tgccggcact
     1381 tgcagttcgc aggtgtatgt gctgaagaaa gcctaacctt cttgcacgaa gcattatcaa
     1441 ccagccaggt tcttgtttca gcccgttgca gactaaataa tttagcatat tttcgggctt
     1501 gtgtttgcaa tagttgacat agaaaccacc gggggaagtg ctggcaacag tggcattact
     1561 gaaatagcca ttgtactgca caacggacgc gaagtggaag gcaagtttgc caccctgatc
     1621 aatccgcaac agaaaattcc gaggtacatc acggccctta caggcatcag tgactacatg
     1681 gtggcggatg cgcccacttt tgaacagatt gccgaccgca ttttcaattt gctgcagcac
     1741 cgcgttttcg tagcgcacaa tgtcaatttc gattactcct ttgtgctgaa ccacctggtg
     1801 gaagcaggtt tccagtggca ggcccggaaa ctctgcacgg ttcgttatgc ccgcaaagtg
     1861 atgccggggc atccttcgta ccataccggc agcgacgacc gttggcgcgc ggccaattgg
     1921 atcaacgagt atacccttaa gaacgtgcat gccgagctct cggccgaagc ggtcttcgcc
     1981 gccgaagtgc aggtcgacga gccgcttagc gagagcgaag ccaagacgca ggcgaccgag
     2041 ttgagtagcc tcagggattg ggagctacag attcggcgcg
//
LOCUS       DATIQF010000134         2186 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_32567, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000134 DATIQF010000000
VERSION     DATIQF010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2186)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2186)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2186
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32567"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..880
                     /locus_tag="VLL95_02115"
     CDS             <1..880
                     /locus_tag="VLL95_02115"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSR37683.1"
                     /translation="STLSVTSLRYYLPANNRYTYLAALIVLPGLLWFVLCRSLLMVIP
                     YHEADYDQFWSQSAPIRLAVGMLLLAFVTLMHVLWYTLQQHREDDKRKSELEQLAREA
                     ELYHLKEQLHPHFLFNSLNSINALIGSKPEAARSMIQELSDFLRGTLKHDHKQWQSLK
                     DELQHLELYLGIEKVRFGHRLQTVVQCKEGLEETRIPAMLLQPVVENAIKFGLYDTTQ
                     SVLISIDARMAGTQLVIDVTNPFDPETVSRKKGTGFGLRSVERRLHLLFAQTGLLTTQ
                     EHDNYFTTTLKIPQRK"
     gene            877..1617
                     /locus_tag="VLL95_02120"
     CDS             877..1617
                     /locus_tag="VLL95_02120"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSR37684.1"
                     /translation="MTAVIVIDDEPLARAMVMEYLQAYPDLQVVAECGDGFEGVKAIQ
                     HHKPGLVFLDIQMPKINGFEMLELLEQPPPVIFTTAFDEYAIKAFESNALDYLLKPFS
                     KERFDKALQRWRSQPVQAVQQAQSNLLQEEVLSPVQQERIVVKTGGNIRIIPVHEVVY
                     LEAADDYVKVHTVDGSFLKHKTMAFFEKTLDPQQFVRVHRSYIVAVKNITKIDPYEKE
                     SYLALLKQGARVPVSKAGYNKLREVLGM"
     gene            1644..>2186
                     /locus_tag="VLL95_02125"
     CDS             1644..>2186
                     /locus_tag="VLL95_02125"
                     /inference="COORDINATES: protein motif:HMM:NF015451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HSR37685.1"
                     /translation="MAVSSKHLVVIGGGAAGFFCAVNAARMSPGLRVTIVEKSGKVLQ
                     KVKVSGGGRCNLTHDCDSIATMAKCYPRGEKFVKKLFHHFFTHDTVEWFTSRGVPVKA
                     ERDGRMFPKSDSSQSVIDCLLGEANKFHVDLVLHFAVEKIAHSEKGWKIVAADKRSLE
                     ADYLCIACGGFPKQEMFHWIT"
BASE COUNT          580 a          519 c          569 g          518 t
ORIGIN      
        1 cagcacgtta agcgttacat cgcttcgtta ctacctgccg gccaacaacc gctacaccta
       61 cctggcggca ttgattgtat tgcctgggct gctctggttt gtactgtgcc gcagtttact
      121 catggtcatt ccttaccacg aagcagatta tgatcagttc tggagtcaat cggcccccat
      181 acgcctggca gtgggcatgt tgttgctggc ctttgtcacg ctgatgcatg tgctgtggta
      241 cacgctgcag cagcaccggg aagacgataa gcgcaaatct gaactggaac aactagcccg
      301 agaagccgaa ctctatcatt tgaaagaaca gttgcatccg cattttctgt tcaacagcct
      361 caacagcatc aatgcactca taggctctaa accggaagcc gcccgcagca tgatccagga
      421 attgtccgac tttttgcggg gcacattgaa gcacgatcac aaacaatggc aatcgctgaa
      481 ggatgagttg caacacctgg agctttacct cggcattgaa aaagtgaggt tcgggcatcg
      541 gctgcagaca gttgtccaat gtaaagaagg gctggaggag acacgtatac ccgccatgct
      601 gttacagccc gtggttgaaa atgccatcaa atttggtttg tacgacacca cgcagtctgt
      661 gcttatctcc attgatgccc gaatggcagg cacacaattg gtgatagatg taaccaatcc
      721 ctttgacccg gaaacggttt cccgtaaaaa agggaccggc tttggtttgc gctccgtgga
      781 aagaaggttg catcttttgt ttgcgcaaac aggactgctc accacacagg aacacgacaa
      841 ttattttacc accacgctaa aaattccgca acgcaaatga ctgctgttat tgtgatagac
      901 gatgaaccgc tggccagggc catggtgatg gaatacctgc aggcttaccc ggatttgcag
      961 gtagtggccg aatgcggcga cggttttgaa ggagtgaaag ccattcaaca tcataaaccc
     1021 ggcctggtat tcctggatat ccaaatgccc aagatcaatg gatttgaaat gctggaattg
     1081 cttgaacagc cgccaccagt catattcacc actgcttttg atgaatacgc catcaaagcg
     1141 ttcgaatcaa atgcgttgga ttatttattg aaacccttca gcaaagaacg tttcgacaag
     1201 gcgctgcagc gttggcgcag ccagccggtg caggcagtac agcaggcgca aagcaacctg
     1261 ttgcaggagg aggtgctgtc gccggtgcag caggaacgca ttgtggtaaa aacaggaggt
     1321 aatatccgca tcatacctgt gcacgaggtg gtgtacctgg aagcggctga tgattatgtg
     1381 aaagtgcata ccgtcgatgg cagttttctg aagcacaaga ccatggcctt ctttgaaaaa
     1441 acactggacc cgcagcagtt tgtgagggta catcgttcct atatcgtggc ggtgaagaac
     1501 attaccaaga ttgatcctta cgaaaaagaa agttacctcg ccctgctgaa acaaggtgcc
     1561 agggttccgg tgagcaaagc cggctacaat aaacttcgcg aagtattggg catgtaatca
     1621 aaacatcgcc catctttgac gttgtggcag tttcctcaaa acatctggtg gtaattggcg
     1681 gtggtgccgc tggttttttt tgtgcagtga atgctgcccg aatgagcccc gggcttcgtg
     1741 ttaccattgt tgagaagagc ggcaaagtgc tgcagaaagt gaaagtaagt ggcggcggca
     1801 ggtgcaacct gacgcatgat tgcgacagca tcgccaccat ggccaaatgc tatccaagag
     1861 gagagaagtt cgtaaaaaaa ttgttccatc actttttcac ccacgataca gtggaatggt
     1921 ttaccagtcg tggtgtgcca gtcaaagcgg agcgtgatgg ccgcatgttt ccaaaatcgg
     1981 acagttcaca atcggtgatt gactgcctgc tcggggaagc caataagttt catgtagacc
     2041 tggtgctgca ttttgctgta gagaaaatag cacacagcga aaaaggctgg aagattgtgg
     2101 ccgccgacaa aagaagtctt gaagcagatt atctctgcat cgcttgcggc ggttttccca
     2161 aacaggaaat gttccattgg attaca
//
LOCUS       DATIQF010000135         3038 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_17390, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000135 DATIQF010000000
VERSION     DATIQF010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3038
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17390"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..703
                     /locus_tag="VLL95_02130"
     CDS             <1..703
                     /locus_tag="VLL95_02130"
                     /inference="COORDINATES: protein motif:HMM:NF019042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="porin"
                     /protein_id="HSR37686.1"
                     /translation="FLSGIQAQFVATNQHIFTAQILNSRTKTYKELYDSIPGVTEARF
                     PAALVMNWRGNFGNGKFTTLWSYSRFIEAKNKSMFYLALGNMYNFKKGSITYDFKWSY
                     EEIDRKGIISDIIPDNLYPYRAQNAEYREHWLQLQYRFAPKWNAALIGMVSQAFWKDN
                     PDNSPGKDDLLRTSWGVIPTIEFYPFKDLNLRFFATHVARMYRFSDYAKQRGGAENYN
                     TGRFMLGFITPLLIL"
     gene            743..1513
                     /locus_tag="VLL95_02135"
     CDS             743..1513
                     /locus_tag="VLL95_02135"
                     /inference="COORDINATES: protein motif:HMM:NF022142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2490 domain-containing protein"
                     /protein_id="HSR37687.1"
                     /translation="MTGCLAMGSFFYTDGLQAQTPQKEVNHQVQTWFSINSTWHLSDR
                     WGVIGDFHVRRNNFLSDPSFYFVRVGANYWFQDRFTVSAGYGRMWIAPSNFGWKYYAR
                     ENRLHQQALLSTKLERTGIVLRIRNEQRWVQLVANDQPTGKYRFVNRVRYLMSFSFPL
                     SKKSDKWALVAADEVLLNFGRDVVYNTFDQNRLFIGLRNKINKDWSYDIGYMNVYQQR
                     PLGFLYDMNHTFRWFFYYNPDLRKNKALHRQLIDSREE"
     gene            complement(1543..>3038)
                     /locus_tag="VLL95_02140"
     CDS             complement(1543..>3038)
                     /locus_tag="VLL95_02140"
                     /inference="COORDINATES: protein motif:HMM:NF013109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015116 - sulfate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HSR37688.1"
                     /translation="CCMAGGLLFAIFTKGRQVAVGPTSAISLMVGTSLALLSGGDPAK
                     WVAMAQLTALGVFMVCVAAYLLKLSSLVNFIGHNVLIGFKTGAACVIAATQLPKLFGV
                     EGGGANFFDRIYRLVLHLPETNLTVLFFGLAALAVLIAGNRLLPGRPVSLLVVVGSIV
                     LVGTTSIANQGLHLTGHIPSGLPDLAWPGLRFREVDEIFGLVLGVFFMGFIETSSVVR
                     TFANKHKYPADARQELLSLGMANLATGLASGYPVSGGLSQSTVNDKAGAKTPLSLIIC
                     SLVLGIILLYFTGLFTKLPEVILAVVVLDAISGLMKIKEIKHLYSLSKVEFAVALIAV
                     LGVLTFGILKGVLIAAIVSLALLIKRVATPNVAVLGQIPGTSKFSDIKRHADNVELPG
                     IKILRIESSILYFNEQHVSEQIRSIVSNTAGIHLLVLDLSNVSIVDVSGSEMLLELCE
                     HFSEKKINVRIVEAHSEVRDLLRQQGIEDLVDHVSRKLDINDVVRNA"
BASE COUNT          858 a          770 c          711 g          699 t
ORIGIN      
        1 ctttttatcg gggatacaag cacagtttgt cgctaccaat cagcatattt tcaccgccca
       61 gatactcaat tcaagaacca aaacctataa ggaattatac gacagcattc cgggtgtaac
      121 ggaagcaaga ttcccggccg cactggttat gaactggagg ggcaatttcg gaaatggcaa
      181 attcaccacg ctgtggtctt acagccgttt tattgaagcc aaaaacaaaa gcatgtttta
      241 tctcgccctg ggtaacatgt acaatttcaa aaagggaagc atcacctacg acttcaaatg
      301 gagctatgaa gagatcgacc ggaagggaat tatttcggac attatccccg ataatcttta
      361 tccatatagg gcacaaaatg cagaataccg tgaacactgg ctgcaattgc aataccgttt
      421 tgcacccaag tggaacgcgg cgctcatcgg catggtaagc caggcctttt ggaaagacaa
      481 tcctgacaac agtcccggca aggatgacct gttgcgcact tcgtggggcg tgattcctac
      541 cattgaattt tatccattca aagacctgaa tcttcgtttc tttgcaacgc atgtggctcg
      601 catgtatcgg ttctctgatt atgcgaagca aaggggcggc gctgagaact acaacaccgg
      661 tcgtttcatg cttggcttta ttacgccact attgattttg tgaggaccgt tttgttttat
      721 gaaaagttat ctcaaacgat taatgacggg ctgcctggca atgggcagct ttttttatac
      781 tgatggtttg caggctcaaa caccgcaaaa agaagtgaac catcaggtgc aaacatggtt
      841 cagcattaac agcacctggc atttgtcaga tcgctggggc gtgattggcg atttccatgt
      901 acgcaggaac aacttcctga gcgatcccag cttttatttc gttcgtgtcg gggccaacta
      961 ttggttccag gacagattca ctgtttcggc aggctatggc cgcatgtgga ttgcgcccag
     1021 caactttggc tggaagtatt atgcccgcga aaaccgattg caccagcaag cattgctcag
     1081 caccaaactg gaacgcaccg gcattgtact ccgcatcaga aatgaacagc gttgggtaca
     1141 gttggtagcc aatgaccagc ctaccggtaa atatcgtttc gtgaaccggg tgaggtacct
     1201 gatgagtttt agttttccgc tatcaaaaaa atcagacaag tgggcgctgg tagctgcgga
     1261 tgaagtgctg ctcaatttcg gcagggatgt ggtgtacaac acgtttgacc agaaccgcct
     1321 cttcattgga ctgcgcaata aaatcaacaa agactggagc tacgacattg gctacatgaa
     1381 cgtataccaa caacgaccgt taggctttct gtacgatatg aaccacacct ttcgctggtt
     1441 cttttactac aaccctgatc tcaggaagaa caaagcctta catcgccaac tgatcgacag
     1501 ccgggaagaa taagcatggc ctgtgctgag ctaagcaacc gatcaggcat ttctgaccac
     1561 atcattgatg tcgagtttcc tgcttacatg atccaccagg tcctcaattc cctgctgacg
     1621 cagcaaatcc ctcacttccg aatgggcttc gacgatgcgc acattgatct tcttttctga
     1681 aaaatgctcg cataactcaa gcaacatttc agacccagac acatcaacga tagaaacatt
     1741 agaaagatcg agcaccaaca agtgaatacc tgctgtattt gaaacaatgg aacgaatctg
     1801 ctcgctgacg tgttgctcat tgaaatacag aatggaggat tcaatacgca ggatcttgat
     1861 acccggcagt tcaacattat cagcatgtcg tttgatatct gaaaacttgc tggtgcccgg
     1921 gatctggccc agaacggcca cattaggggt ggccactctt ttgatgagca gggccagcga
     1981 aacaatggcg gcgatcaata cccccttcaa aataccaaag gtgagcacgc ccaacacggc
     2041 gatcagggca acagcaaact caactttgct cagcgaatac agatgtttga tctctttaat
     2101 cttcatcagg ccactgatag catccaacac cactaccgcc aatatcactt caggaagctt
     2161 cgtgaacagg ccggtgaagt aaagaagaat aattccgagt accagtgagc aaataatgag
     2221 agatagcggg gttttggctc ctgccttgtc atttacagta gactgcgaca agccaccgga
     2281 aaccgggtag ccacttgcca aaccggtagc caggttggcc attcccaacg acaacagctc
     2341 ctgcctggca tcggcagggt atttgtgttt gttggcaaaa gtgcgtacca cggaagacgt
     2401 ctcaataaat cccatgaaga aaacgcccag caccaggcca aatatttcat ccacttcccg
     2461 aaaacgcaaa cctggccatg ccagatctgg cagtccggac ggaatatgac ccgttaaatg
     2521 tagaccctgg ttggctatgg atgtggtgcc caccaaaact atggagccaa ccaccaccag
     2581 tagcgatact ggccgaccgg gtagtaaccg gttgcctgca atgagtacgg ccaaggctgc
     2641 caacccaaaa aacaatacgg ttaaattggt ttcgggcagg tgcagcacca gccggtaaat
     2701 gcggtcaaaa aaattggcac caccaccttc cactccaaaa agtttgggca gttgggtggc
     2761 agcaataacg caggcagctc cagttttaaa gccaatgagc acattgtgcc caataaaatt
     2821 gaccaggcta ctcagcttta gcaaataagc tgctacgcaa accataaata cacccaaggc
     2881 agtgagctgt gccatggcca cccatttggc ggggtcgcca cccgaaagca atgccaggct
     2941 ggtgcctacc atcagcgaaa tggcagaagt agggccaaca gccacctgcc tgcccttggt
     3001 aaatatggcg aatagcagcc cgcccgccat gcagcagt
//
LOCUS       DATIQF010000136         4836 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_62901, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000136 DATIQF010000000
VERSION     DATIQF010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4836
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62901"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1496
                     /locus_tag="VLL95_02145"
     CDS             <1..1496
                     /locus_tag="VLL95_02145"
                     /inference="COORDINATES: protein motif:HMM:NF012348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37689.1"
                     /translation="DIILTGRTVFGHSSAKGQQLEDHYFGSIPERVYAFMRDFENESY
                     KLGIPLRTRHNEVAPGQFECAPIFEEANLAVDHNILLMDVMTRLAKRHNLKVLLHEKP
                     FAGINGSGKHNNWSLSTNTGVNLLAPGRTPKTNLMFLTFFVNVIKAVHEYADLLRASI
                     ASAGNDHRLGANEAPPAIISIFIGKYLSEVLAEVKERVGDNFSEQDEILLKLDIHKTI
                     PELLLDNTDRNRTSPFAFTGNKFEFRAVGSSANCANAMTVLNAIMAATLNAFKQEVDG
                     LIEKGEKKEVAIMEVIKQYIVDAEKVLFEGDGYSEEWHAEAARRGLPNVPTTPLALDA
                     YLTQKAKEMFESLAIYNHAELEARHEIMLEDYIKRVQIESRIMGELCTSHILPSAIKY
                     QNILIENIKGLKDLGIMGDAFSNQVQILQKISKHIAEVSECVEQMIEARKVCNAMSNT
                     RTKAIAYCTQVKEAYFDKLRYHVDKLELLVDDQYWLLPKYREMLFLR"
     gene            complement(1575..2033)
                     /locus_tag="VLL95_02150"
     CDS             complement(1575..2033)
                     /locus_tag="VLL95_02150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37690.1"
                     /translation="MKRILLFLLVLFSLQSGIAQGPPPGGPGGRKEELEALRIAFISK
                     QLELTPAEAEKFWPVYNSYQGDLRKMVREHHEKGGSELDLEERVLNLRKRYKTDFTRC
                     ISDEKFDKLMRVERTWSEMLRKELQRRREGGERPMIYGRQRPGGGSPVRQ"
     gene            complement(2060..2791)
                     /locus_tag="VLL95_02155"
     CDS             complement(2060..2791)
                     /locus_tag="VLL95_02155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37691.1"
                     /translation="MNRDPYIQSELNETAPMLASLSNSMPYSIPAGYFDTLTDGIVEK
                     VLLADGNEKYQGPAIAIPEGYFDQLPDLILGRIKAEEASLELQDVAPVLASLEKRNPY
                     TVPAGYFEQFEAMSSVQQEAIKARTVQIFSGKMMLRVAAAIVLLLSAFMIWKMSGQTK
                     SGDAPVEITLKPADSVMLHQSLAAIDDTSLSTYFNDWGVAQEVKSVGIMLETDNIEQA
                     LSSFSESELETQLTEIPAPAIESGI"
     gene            complement(2837..3391)
                     /locus_tag="VLL95_02160"
     CDS             complement(2837..3391)
                     /locus_tag="VLL95_02160"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSR37692.1"
                     /translation="MHLDDKTLMLQFREPATREKAFTAIVRKYQEKLYWHIRRMVVEH
                     EDANDVLQNVFIKVWNGLENFREDSQLYTWLYRIGTNESLSYLEQKKRKATAVTIGED
                     GSLDLENSIKADKHFDANKLEWRLQLAINQLPEKQRLVFNLRYYDEMPYEEMSKVLGT
                     SAGALKASYHHAAKKIEEYITRHA"
     gene            complement(3470..3736)
                     /locus_tag="VLL95_02165"
     CDS             complement(3470..3736)
                     /locus_tag="VLL95_02165"
                     /inference="COORDINATES: protein motif:HMM:NF024252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSR37693.1"
                     /translation="MPGTIIKKLREKKGLKQEAVAMEMGISQAAYSKIENNLTELTVR
                     HCKILSRIFGENVYEYLEDEFEIRRHKPQKEQQQDEGMLKDLVA"
     gene            complement(3827..4795)
                     /locus_tag="VLL95_02170"
     CDS             complement(3827..4795)
                     /locus_tag="VLL95_02170"
                     /inference="COORDINATES: protein motif:HMM:NF014798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase family protein"
                     /protein_id="HSR37694.1"
                     /translation="MPQLSDIVVQNEKETRGGFGEGIHEAGKRNPKVVALTADLAGSL
                     KLGPFMKDFPDRFFQIGIAEANMMGIAAGLTIGGHIPYTTTFANFSTGRVYDQIRQSI
                     AYSHKNVKICASHAGLTLGEDGATHQILEDIGLMKMLPGMTVIVPCDFNQTKAATIAI
                     ADHSGPVYLRFGRPKWPNFTKEDGSDFEIGKAQLLAEGSDVSLFACGHMVWKAIEAAR
                     LLAQEGISAEVINIHTIKPLDEAAIIASISKTRCAVTAEEHNVLGGLGDSVAQVAAKN
                     LPIPIEYIGTNDTFGESGKPNELLSKFGLDTPFIVAAAKKAISRKG"
BASE COUNT         1142 a         1233 c         1200 g         1261 t
ORIGIN      
        1 cggatattat ccttaccggt cgcactgtct tcggccattc ttccgccaaa ggacagcagt
       61 tggaagatca ttatttcggc tccattcctg aaagggtata tgccttcatg cgtgatttcg
      121 aaaatgaatc ctacaaactg ggcatccccc tgcgcacccg tcacaacgaa gtggcgccgg
      181 gccagtttga atgtgcaccc atttttgaag aggccaacct cgccgtggat cacaacatct
      241 tgctgatgga cgtgatgact cgccttgcca agcgtcacaa cctgaaagtg ttgctgcacg
      301 aaaaaccttt tgccggcatc aatggcagtg gcaagcacaa caactggagc ctgagcacca
      361 acacgggtgt aaacctcttg gctccgggcc gtacgcccaa aaccaacctg atgttcctca
      421 ccttctttgt gaatgtgata aaggctgttc acgaatatgc tgacctgttg agggccagca
      481 ttgccagcgc cggcaacgac caccgcctcg gagccaacga agcgcctcct gccatcattt
      541 ccattttcat tggcaaatac ctgagcgaag tattggccga agtgaaagag agagtaggcg
      601 acaacttcag cgagcaggac gagatattgc tgaagctcga cattcacaaa accattcctg
      661 aattgctgct tgacaatacc gatcgcaacc gtacttcacc ttttgccttc accggcaaca
      721 agtttgagtt cagggcggtg ggcagcagtg ccaactgtgc caatgccatg acggtgctga
      781 acgccattat ggccgccaca ctgaatgctt tcaagcaaga agtagatggc ctgatcgaaa
      841 aaggagagaa gaaggaagtg gccattatgg aagtgatcaa gcaatacatt gtagatgccg
      901 aaaaggtatt gtttgaaggc gatggataca gcgaagaatg gcatgctgaa gcggcccgca
      961 ggggactgcc gaatgtgccc accaccccgc tggccctgga tgcctacctt acgcagaagg
     1021 ccaaggaaat gtttgaaagc ctggccattt acaaccatgc cgaattggaa gcccgtcatg
     1081 aaatcatgct ggaagattac atcaaaaggg tgcagatcga aagccgcatc atgggcgagt
     1141 tgtgcaccag ccatattctg cccagcgcca tcaagtacca gaacatcctg atcgaaaaca
     1201 tcaaagggtt gaaagacctg ggcatcatgg gcgatgcatt cagcaaccag gtgcagattc
     1261 tgcaaaagat aagcaagcat atagctgaag tgagcgaatg cgtggagcag atgattgaag
     1321 cacgcaaagt gtgcaatgcc atgagcaata cccgcaccaa agcaatcgcc tattgcacac
     1381 aagtaaaaga agcctacttc gataagctcc gttaccatgt agacaagctg gagttgttgg
     1441 tagacgacca gtattggttg ctgcccaaat accgcgaaat gcttttcctg aggtaggaat
     1501 ggcgcctgta gaaaaatccc cggaagatga tttccgggga ttttttttgg tgaaaatatg
     1561 gtgagcgatg aggactattg ccttacggga gaacctccac ccgggcgttg ccgcccatat
     1621 atcatggggc gttcaccgcc ttcacgccgg cgttgcagtt ctttgcgcag catttcgctc
     1681 caggtacgtt ctacccgcat cagcttgtca aacttttcgt cgctgatgca ccgggtgaaa
     1741 tctgtcttgt accttttgcg caggttcagc accctttctt ccaggtccag ttcgctgcca
     1801 cctttttcgt gatgctcacg aaccattttg cgcaggtcgc cctggtagct gttgtacacg
     1861 ggccagaatt tttcggcttc ggcaggtgtt agttccagtt gcttgctgat gaaagctatc
     1921 cgcaatgcct cgagttcctc cttccgtccg ccgggcccgc caggaggtgg cccttgtgca
     1981 atgccggatt gcaggctgaa caaaacgagc aaaaagagta aaatacgttt catatgataa
     2041 tggtttcagg gtgagtcaat caaatgccac tctcaatggc aggagcgggt atctctgtca
     2101 attgggtttc caattccgat tcgctgaatg aagaaagcgc ttgttcaata ttatctgttt
     2161 cgagcatgat gccaaccgat ttcacttcct gtgccacccc ccagtcattg aaataggtgc
     2221 tgagggaagt gtcgtcgatg gcagccagcg actgatgaag cattacagaa tcggcaggct
     2281 tcagggtgat ttcaactggt gcgtcgcccg atttggtttg tccactcatt ttccaaatca
     2341 taaaagccga aagcaacaac acaatggcgg cggccacccg cagcatcatt ttgccggaga
     2401 aaatctgcac agttcttgcc ttaatggcct cttgttgaac agaggacatt gcttcaaact
     2461 gttcaaaata acccgcaggt acagtatagg gattgcgctt ttccaatgac gccagtacgg
     2521 gcgctacatc ctgcaattca agtgatgctt cctccgcctt tattcggcca agaatcagat
     2581 caggcaattg atcgaagtag ccttccggaa ttgctatcgc cggtccctgg tacttttcat
     2641 ttccatcggc cagcaacact ttttcaacga tgccatctgt cagcgtgtcg aagtaacccg
     2701 ccggaatgct gtagggcatg ctgttgctca gcgatgccag catgggtgcg gtttcgttca
     2761 gttcactttg tatgtatgga tcgcggttca ttttgctcaa ttatctgaca aggaatgtta
     2821 ttaaaagttt aatgccttat gcatgccggg tgatgtattc ctcaattttt ttggcggcat
     2881 gatgatagct ggctttcaat gctcctgccg acgtgcccag caccttgctc atttcttcat
     2941 acggcatttc atcataatac cgcagattga ataccagtcg ttgcttttcg ggtagttggt
     3001 tgatggccag ttgcaagcgc cactccagtt tattggcatc aaaatgcttg tcggctttga
     3061 tgctgttttc caggtccagg ctgccatctt cgccaatggt taccgcggta gctttccttt
     3121 tcttctgttc aagatagctg aggctttcat tggtgccaat gcgatacaac catgtataca
     3181 attggctgtc ttccctgaaa ttttcgagcc cgttccaaac cttgatgaaa acattctgaa
     3241 gaacatcgtt ggcatcttca tgttccacca ccatgcgccg gatgtgccag tataattttt
     3301 cctggtactt ccttacaatg gctgtgaatg ctttttcccg ggtggcaggt tcccgaaact
     3361 gaagcattag tgttttgtcg tcgaggtgca tgcaggcagg ggttgcattt aaaaatacag
     3421 cccttcgact aaggaagggc tgtaaggttt aattcgcaaa tattttgctt caggcaacca
     3481 ggtcttttaa catgccctcg tcctgttgtt gttctttctg cggtttatgt cgcctgatct
     3541 caaattcgtc ctccaggtat tcatacacgt tttcgccaaa tatgcggctg agtatcttgc
     3601 aatgcctcac tgtcagctcg gtaagattgt tctcaatctt gctgtaagcg gcttgcgaaa
     3661 tgcccatttc catggcgacc gcttcctgct tcagcccttt tttctctcgc aactttttga
     3721 tgatggttcc tggcatttct aaagcgtttc agtgtttaac gaagaaaagg tcggtttgtt
     3781 taaccataaa ttcaaaaaaa actaaataaa tgcaacaggc ccgatcttac cccttacggc
     3841 tgatggcttt tttggcagca gccactatga acggcgtgtc caggccaaat ttggaaagca
     3901 gctcgttggg tttgccgctt tcgccaaaag tatcgttggt gccaatgtac tcaatgggga
     3961 tgggcaggtt tttggccgct acctgggcta ctgaatcgcc caggccgccc agcacattgt
     4021 gctcttcggc cgttacggca cagcgggttt tgctgatgct ggcaataatg gccgcctcat
     4081 ccaacggctt aatggtgtgg atattgatca cctcggcgct gatgccttcc tgggccaaca
     4141 gcctggcggc ttcaatcgct ttccagacca tatgaccgca ggcaaacagg gaaacatcgc
     4201 ttccttcagc cagcaactgg gctttgccaa tttcaaaatc gctgccatct tctttggtga
     4261 aattgggcca cttggggcgg ccaaagcgca aatacaccgg gccgctgtga tcggcaatgg
     4321 caatggtggc cgccttggtc tggttgaagt cgcaaggcac gatcactgtc atgccgggca
     4381 gcatcttcat caggccgata tcttccagta tctggtgggt ggcgccatct tcgcccaggg
     4441 taaggccggc atggctggcg cagatcttta cattcttatg gctgtaggca atgctctggc
     4501 gaatttgatc gtacacccgg ccggtgctga aattggcaaa cgtggtggtg tacgggatat
     4561 gaccgccaat ggtaagcccg gcggcaatgc ccatcatgtt ggcttcagca atgccaatct
     4621 ggaaaaacct gtccgggaaa tctttcatga agggccccag tttcagtgat ccggcgagat
     4681 cggcggtgag ggctaccacc ttggggttgc gcttacctgc ttcatggatt ccttcaccaa
     4741 atccaccgcg ggtttctttc tcattttgca ctacgatatc cgataactgg ggcatgctgt
     4801 ttcattttgt gccgcgaaaa tagcccttac ccaaac
//
LOCUS       DATIQF010000137         3371 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_260647,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000137 DATIQF010000000
VERSION     DATIQF010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3371
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260647"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2049)
                     /locus_tag="VLL95_02175"
     CDS             complement(<1..2049)
                     /locus_tag="VLL95_02175"
                     /EC_number="1.1.1.40"
                     /inference="COORDINATES: protein motif:HMM:NF013665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004470 - malic enzyme activity [Evidence
                     IEA];
                     GO_function: GO:0004471 - malate dehydrogenase
                     (decarboxylating) (NAD+) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HSR37695.1"
                     /translation="MQNDSRKQQALEYHAKGRPGKIEVVPTKEAKTQRDLSLAYSPGV
                     AEPCKEIKADPSSVYTYTAKGNLVAVISNCTAVLGLGDIGPEDSKPVMEGKGVLFKIF
                     ADIDVFDIEVNEKDPDKFCDIVKALEPTFGGVNLEDIKAPECFYIEKRLREEMKIPVM
                     HDDQHGTAIISSAALLNALELQKKKIEKVRFVVNGAGAAAIACIKLYIALGARPENFV
                     VFDINGVLHKERTDLDNFKMTIAVDPTKKHWTLREAMKDADMFLGLSVGNVVTADMVK
                     SMAKNPVVFACANPDPEIMYDVAMAARKDVIVATGRSDTPNQVNNVLGFPYIFRGALD
                     VRATTINEAMKLAAVKALADLAKSPVPDIVNLAYNEKNISFGPHYIIPKPLDPRLLAV
                     VAPAVAKAAIESGVAQNPIKNWDNYEIELNKRLGLDNQLFRVIGLKARKDPRHVIFAE
                     ADNVKVLKAAEICRDENVCYPILMGEEKKIRRIADENGLSLDDMVIIDPKEEKYEDKR
                     QEFGDQFFLMRGRKGFNNYEAIKAMKDRMYFACMMVNNGEADAVIAGPSRDYSGLIRP
                     ALQTVGTEPGVKKIAGMYIMLTKKGPLFLADATVNFNPTAEEIADITMLTAKEVRSFN
                     LQPRIALLSYSNFGSSNSPEARMMAEARNIVKQRDPNLIVDGEMQGVVAFNNEILSEN
                     Y"
     gene            complement(2131..2511)
                     /locus_tag="VLL95_02180"
     CDS             complement(2131..2511)
                     /locus_tag="VLL95_02180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37696.1"
                     /translation="MFLNKLHLFSSSKNMAMPAKCPVCNQPMEIEVGFYYGTGYVSYA
                     LTVAISVATFVAYWVLFGISINDNSLFIWLGVNIAVLVLMLPYLMRLSRAIWLSFFVK
                     YDPDWQHHAPPKSERIVKEHMGNW"
     gene            complement(2671..3309)
                     /locus_tag="VLL95_02185"
     CDS             complement(2671..3309)
                     /locus_tag="VLL95_02185"
                     /inference="COORDINATES: protein motif:HMM:NF014874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HSR37697.1"
                     /translation="MLYDPTGLKDVHWYGTASGEIVGEVIESEPFLKVQISKGFEAPM
                     TIATNLVGSYNIYNVLAAAVVGKQFNVPAAQIKEAIEHYVPTNSRSQLVEQRGNKVIL
                     DAYNANPTSMAAAIENFAKLHAENKMLFIGGMMEMGEDSEKEHTQVIQLINKFPWKDV
                     ILVGGDFAKVPHPYRYFPNSEEAAAWWKANETEGNYLLVKGSRSMKMEKIVE"
BASE COUNT          755 a          841 c          811 g          964 t
ORIGIN      
        1 atagttttcg ctgagtattt cattgttgaa ggctacaacg ccctgcatct cgccatccac
       61 aatcaggttg gggtcgcgtt gttttacaat gttgcgggct tcggccatca tgcgggcttc
      121 cggcgaattg ctgctgccaa aattggaata ggagagcagt gctattcgcg gttgcaggtt
      181 gaagctgcgc acttcctttg ccgtcagcat ggtaatgtca gcaatctctt cagcagtggg
      241 gttaaagtta acggtggcat ctgccaaaaa gagtggtcct tttttggtaa gcatgatgta
      301 catgccggcg atctttttca caccgggctc ggtgcctact gtttgcaggg ctggacgaat
      361 gaggccggag tagtctcggc tgggtcctgc aatgacggca tcggcttcgc cattgttcac
      421 catcatgcag gcaaaataca tgcggtcttt catggctttg atggcctcat aattgttgaa
      481 accctttctt ccccgcatca ggaagaattg atctccaaac tcctgtcgct tgtcttcgta
      541 cttctcttcc ttggggtcga tgatgaccat atcatccagc gacaagccat tctcatctgc
      601 tatccgcctg atctttttct cttcgcccat caaaatgggg tagcacacgt tttcgtcgcg
      661 gcatatttct gcggccttca gcactttcac gttgtcggcc tctgcaaaaa tcacatggcg
      721 cggatctttt cttgctttca gtccaatgac acggaacaac tggttatcga ggccgagacg
      781 tttgttcaac tcaatttcgt agttgtccca gttcttgata ggattctgtg ccacaccact
      841 ttcgatggcg gctttggcca ctgcaggtgc taccacagcc aacaaacggg gatcaagtgg
      901 tttgggaatg atgtagtgag ggccgaatga aatgttcttt tcgttgtagg cgaggtttac
      961 gatatcgggt accggcgact tggccaggtc ggccagcgcc tttaccgcag ccagtttcat
     1021 ggcttcgttg atggtggtgg ctcttacatc tagcgcccca cgaaagatgt aggggaagcc
     1081 cagtacattg ttcacctggt tgggcgtatc gctgcggccg gtggccacaa tcacatcttt
     1141 acgggcagcc atggccacat cgtacatgat ctcaggatcg ggattggcgc aggcaaatac
     1201 caccgggttt ttggccatgc ttttcaccat gtcggcggtt actacattgc ccacactcag
     1261 tcccaggaac atatcggcat ccttcatggc ttcacgaagt gtccagtgtt tctttgtagg
     1321 gtctacagca attgtcattt tgaaattgtc gagatcggtg cgttccttgt gcagcacgcc
     1381 attgatatcg aacactacaa aattctcagg tcttgctccc agtgctatgt agagtttgat
     1441 gcaggcgatg gccgctgctc ctgctccatt cactacaaag cgaaccttct cgattttctt
     1501 tttctgcagt tccagcgcat tcaatagtgc agcactgctg atgatagcgg ttccatgctg
     1561 gtcatcgtgc atcaccggga tcttcatctc ttcccgcaaa cgcttttcta tgtaaaaaca
     1621 ttccggtgct ttgatgtctt ccaggttgac cccaccgaaa gtgggttcca gcgcttttac
     1681 tatgtcgcaa aatttatccg gatctttttc attcacttca atgtcgaata catcgatatc
     1741 ggcaaagatc ttgaagagta cccccttgcc ttccatcacc ggtttgctgt cttccggacc
     1801 aatatcgccc aggcccagta cggcagtaca attgctgata acggccacca ggtttccttt
     1861 ggcagtgtag gtatatactg aggaaggatc ggctttgatt tctttgcatg gttcggccac
     1921 acccgggctg taagcaaggc tgaggtcgcg ttgagttttt gcttctttgg taggaacaac
     1981 ttcaattttt ccaggccggc cctttgcatg gtattccagg gcttgctgtt tacgcgaatc
     2041 gttttgcata ggaggcaaat gtaaggacat tgtttttgga caacagccct gtgatcattt
     2101 gccggaccaa acatttgtat gagtggagca ttaccagttg cccatgtgtt cttttactat
     2161 acgctctgat ttgggtggcg catgatgctg ccagtcaggg tcgtatttta caaaaaaaga
     2221 aagccagatg gcccggctga gccgcatgag gtacggcagc atgagaacca atacggcaat
     2281 gtttacgccg agccaaatga acaagctgtt gtcgttgatg ctgatgccaa aaagcaccca
     2341 ataggctaca aaagtggcaa ctgaaatggc gaccgtcagt gcatagctta catagccggt
     2401 accataatag aatcccactt caatttccat gggttgatta caaaccgggc atttggcagg
     2461 catggccatg tttttcgaag aagaaaacag atgcagtttg ttcagaaaca tattgccttc
     2521 tctgcaccgt gcacatttgc attgcaatac actgggcaaa taggctggtc tcttttgttg
     2581 gggttgatcc atggtaaata aggctgttgg cgaagagggt gtaaaaatac tgccatacta
     2641 tccaggtggg gtgataataa tcaccacggc ctattccaca atcttctcca tcttcatgct
     2701 gcggctgcct tttaccagca ggtagttgcc ttcagtctca ttggccttcc accaggccgc
     2761 tgcttcttct gaattgggga aataccgata ggggtggggt actttcgcaa aatcgcctcc
     2821 taccaggatt acatctttcc atgggaactt attgatcaac tgtataacct gtgtgtgttc
     2881 cttttcgcta tcctcaccca tctccatcat gccgccaata aaaagcattt tgttttcagc
     2941 atgcagtttg gcaaaatttt caatggcggc ggccatgctg gtggggttgg cgttatacgc
     3001 atccaaaatg accttgttcc cacgctgttc caccaactgg cttctgctgt tggtgggcac
     3061 atagtgctca atggcttcct ttatttgtgc cgcaggtacg ttgaattgtt ttccgaccac
     3121 tgctgccgcc agtacgttgt aaatgttgta tgatcccacc aggttggtag caatggtcat
     3181 gggcgcttca aatccttttg aaatctgcac cttcaaaaag ggttcgcttt caattacctc
     3241 gcccactatt tcacccgaag cagtaccgta ccagtgcaca tcctttaaac ctgtgggatc
     3301 atacaacatt tacaacgtac tggcagcagc agtggtcgga aaacaattca acgtacctgc
     3361 ggcacaaata a
//
LOCUS       DATIQF010000138         1968 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_199902,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000138 DATIQF010000000
VERSION     DATIQF010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199902"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..436)
                     /locus_tag="VLL95_02190"
     CDS             complement(<1..436)
                     /locus_tag="VLL95_02190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37698.1"
                     /translation="MPLIKERVSKKATLIAAMVWCILLLVNAWIFLHRSEGYNYRRLA
                     TYDELYVPSEKQHIKKLYFKSDSAIIEMANPMNAQAWRFVRDDSIVAQALVNGHRLAI
                     PLKKGIHTYHFVASGINQPAFECALDFVCEPNGGPGHCRNEWL"
     gene            544..>1968
                     /gene="ggt"
                     /locus_tag="VLL95_02195"
     CDS             544..>1968
                     /gene="ggt"
                     /locus_tag="VLL95_02195"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HSR37699.1"
                     /translation="MKIKRVLFGIMFLWACFFVATAQVSPFNYSLNKSATFDKAAVSC
                     AHPLASEVGAMVLKQGGNAVDAAIAMQWALAVVYPTAGNIGGGGFMVATLANGKTVAL
                     DYREMAPGNAKENMYVDPATGKANTRLSQSGHLASGVPGTPAGLFASHQYAKLSMKKL
                     IQPAIDLAEKGFVITEREANRLNGLQTQLERTNTTLPVFYKTTPWKAGDTLVQKDLAN
                     TLKRIRNKGQAGFYEGETAALIVNEMERGGGIISKEDLKNYKAVWRDPVRFQYKGYDI
                     VSMPPPSSGGILIHQMLKMLEDRPLPSYGFQTVKSVQLITEVERRAYADRAEHLGDPD
                     FYKVPMKGLVDPAYIRQRMADYDSTKASVSANIKPGVIKESMETTHLSVLDKDGNAVS
                     VTTTLNGGYGSKVVVAGAGFFLNNEMDDFSVQPGVPNMFGAIGGAANAIAPGKRMLSS
                     MTPTIVLKNNKPFMVVGTPGGTTII"
BASE COUNT          528 a          507 c          482 g          451 t
ORIGIN      
        1 acaaccattc gttcctgcaa tggccggggc cgccattggg ttcacacaca aaatccaggg
       61 cacattcaaa tgccggctgg tttatgccgg aggctacaaa atgataagta tgtatgccct
      121 ttttcaaagg gatggcaagg cggtgaccat tcaccaaagc ctgggctact attgaatcat
      181 cccgcacaaa acgccaggct tgtgcattca taggatttgc catttcaata atggccgaat
      241 cacttttgaa ataaagcttt ttgatgtgct gcttttcgga tggcacgtac aattcatcgt
      301 aggttgccag cctgcgataa ttgtagcctt cggaccggtg caggaatatc caggcattca
      361 ccagcaataa aatgcaccat accatggccg ctataagtgt tgctttcttt gagactcttt
      421 ctttaatcag cggcataatg ttttgttgaa aaccctaatt ggcataggag cccatttctt
      481 tggataaatc ccagatattt gattggccag tatgaattgc attcaatgaa ataatctttc
      541 aatatgaaaa ttaagcgggt tttattcggt atcatgtttt tgtgggcatg ttttttcgtt
      601 gccaccgcac aggtatctcc attcaactac agtcttaata aatcggccac attcgacaaa
      661 gccgctgtca gttgtgccca tccgctggcc agcgaagtag gcgccatggt attgaagcaa
      721 ggtggcaacg ccgtggatgc cgcgattgcc atgcagtggg cactggcagt ggtatatcct
      781 acagccggca acattggtgg cggcggtttc atggtagcca ccctggccaa tggaaaaacg
      841 gtagcccttg actaccgcga aatggcacct ggcaatgcca aagagaacat gtacgtggat
      901 ccggccactg gcaaagcaaa tacgaggctt tcgcagagcg gccacctggc cagcggcgtg
      961 cccggcaccc cggcaggctt gttcgcttcc caccagtatg ccaaactctc gatgaaaaaa
     1021 ttgatacagc ccgccattga cctggcagaa aaaggatttg tgatcactga aagggaagcc
     1081 aaccggttga acggcttgca aacccaactg gaacgcacca ataccacgct gccggtgttt
     1141 tacaaaacca ctccctggaa ggcaggcgac acgctggttc aaaaagacct ggccaatacc
     1201 ctcaaacgca tcaggaacaa gggacaggcg ggcttttatg aaggtgaaac cgctgcgctt
     1261 attgtgaatg aaatggaacg gggcggtggc atcatcagca aagaagacct gaaaaactac
     1321 aaggctgttt ggcgtgatcc agttcgcttc cagtacaagg gctatgatat tgtttcgatg
     1381 ccaccaccca gcagcggggg catccttatt caccagatgc tgaaaatgct cgaagacagg
     1441 cctcttccct cctatggttt tcaaaccgtg aagagtgtgc agctcatcac cgaagtagaa
     1501 cgtcgtgcct atgccgaccg tgccgaacac ctcggcgatc ccgattttta caaagtaccc
     1561 atgaaaggcc tggtggatcc tgcttacatc aggcaacgca tggccgacta tgacagcacc
     1621 aaagcatcag tgagtgccaa tatcaaaccc ggtgttatca aagaaagcat ggaaaccacg
     1681 cacctgagcg tactggataa agacggcaac gctgtatcag ttaccaccac actgaatggc
     1741 ggctatggca gcaaagtggt agtggccggg gctggctttt tcctcaacaa tgaaatggat
     1801 gatttcagcg tgcaaccagg cgttcccaat atgtttggcg ccattggtgg cgcagccaac
     1861 gctattgctc cgggcaaacg catgctcagc agcatgacac caaccatcgt actcaaaaac
     1921 aacaaacctt ttatggtggt aggcaccccc ggtggcacca ccatcatc
//
LOCUS       DATIQF010000139         3441 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_184745,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000139 DATIQF010000000
VERSION     DATIQF010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3441)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3441)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3441
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184745"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            160..348
                     /locus_tag="VLL95_02200"
     CDS             160..348
                     /locus_tag="VLL95_02200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37700.1"
                     /translation="MKKFPNGVPKSLAHSNMDFKRLRKVKEYPRFEPKISDREIEKAA
                     VVAAFVENFSLINYTKPI"
     gene            426..806
                     /locus_tag="VLL95_02205"
     CDS             426..806
                     /locus_tag="VLL95_02205"
                     /inference="COORDINATES: protein motif:HMM:NF039344.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="START-like domain-containing protein"
                     /protein_id="HSR37701.1"
                     /translation="MSKKQKFTLEYPVRCSPTILFEFLSTSNGLQEWFADKVDDKEDV
                     FSFTWNGSTDKAEVVEKELDRFIRFHWLHAPTEEYFEFRIEKTEVSNQTILVISDFAE
                     KAEIKDQSQLWDYQVKDLFHRLGN"
     gene            complement(803..1393)
                     /locus_tag="VLL95_02210"
     CDS             complement(803..1393)
                     /locus_tag="VLL95_02210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37702.1"
                     /translation="MELSKVALSDAEWQMAAVPDFILTKNRVIDAVYEIFGELADDYR
                     KVFARSASGYPELAVWSPKISRGEKYEDMPWVMLDYPRCFSETEGHFAIRSFFWWGHY
                     FSMQLHISGKYLQEFGPVLPALQASGWYAGYSTEPWNNQLPNAGWTKLDEEQPVTQAG
                     IFGKAAKKMPILEWASAKRFYEENYRELNAALFPGA"
     gene            1415..2863
                     /locus_tag="VLL95_02215"
     CDS             1415..2863
                     /locus_tag="VLL95_02215"
                     /inference="COORDINATES: protein motif:HMM:NF015684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HSR37703.1"
                     /translation="MIKQLDKLILKAFIGPFLATFLIAIFVLILQFFWLWIDDFVGKG
                     IDMPTLGKVVLYVAASWVPVALPLAMLLSTIMTFGNLGETYELVAIKAAGISLRRFMM
                     PIMAASLLVVGVAFMFNNYIIPVVNLRLNTLKYEIVYSKPAFDIKPGVFYTNINGYVI
                     RLGSKDADGQRLKDIIIYERGNFLQDNLIMADRGSMTVSDDKRFLKFHLVNGSRIEER
                     GMRAATNTELIRVSFQEYDKVFDLTSFFKVQSNDSMFKDNYRMLSTRQLSRFMDSVSK
                     KKDSLRTRIVRDITLSFDFMKSHDSGKLKPVVPAKTPTSIKQIIPDSARLTSIDMALS
                     KISAAKSNGDVFYGEYSARSRDVREYNLGWHQKFALSFACFVMFLIGAPLGSIIRKGG
                     IGTPLVFAVIFFAIFHLLNTSGEKLAKEGVLPVPIGTWLPSLVLIPVGIFLTIKAMRD
                     SQLFNKEFYYRSVVQLKKFTSRITRKSPNDHS"
     gene            2875..>3441
                     /locus_tag="VLL95_02220"
     CDS             2875..>3441
                     /locus_tag="VLL95_02220"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF012310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HSR37704.1"
                     /translation="MNRRNFLGQTAKATTGTLLAGSIIAVTESCSSSKKTGSSNKYYK
                     DSPGLTQAPLGYDYKALQPAIDAMTMEIHHTKHAAAYTKNMTEALAAEMPDAKHLEDV
                     FSSISKYSAKLRNNAGGHYNHESYWRWMTPGGKAMSDAFKTNIENAFGSVSDMRSKFN
                     AAATSRFGSGWAWLVLGADKKLQIGSTPN"
BASE COUNT          923 a          832 c          788 g          898 t
ORIGIN      
        1 tgaacctctt cttccggggt aatcagttct acccttccga tttcttgcag gtacttctcg
       61 aggctttgtg attcacgatt ggtgatggac ttcgtgattt tgagttggcg catgctcata
      121 ggccaggttt ttggtggtta aaaaagtgag agtttaagtg tgaaaaaatt tccaaatggt
      181 gtaccaaaat cacttgctca ttctaatatg gacttcaaac gtttaaggaa agttaaggaa
      241 taccctaggt ttgaaccaaa aatttctgat cgtgaaatcg aaaaagcagc agtggtggca
      301 gcatttgtgg agaatttcag cctcattaac tacacaaaac cgatttaaaa tttattttga
      361 tggtttgatt aattttctat tattgcacgc ctccgaatac tttgaatcct aatcttaagg
      421 ccctgatgag caaaaagcaa aagttcacac tcgaatatcc cgtaagatgt tctccaacga
      481 ttctgttcga attcctgagc acctccaatg gtttgcagga gtggttcgca gataaggtgg
      541 acgacaagga agatgtgttt tccttcacat ggaatggcag taccgataaa gcagaggttg
      601 ttgaaaaaga gttggatcgc ttcatccggt ttcactggct acacgctcct accgaagaat
      661 acttcgaatt caggatagaa aaaacagaag taagcaacca gaccatcctc gtgatttctg
      721 attttgctga aaaagctgag atcaaagacc aatcgcaatt gtgggattac caggtgaaag
      781 atctgttcca tcgccttggc aactaagccc ccggaaataa tgcagcattt aattcccggt
      841 agttttcttc ataaaatctt ttagcagatg cccattcaag aatgggcatt ttttttgcgg
      901 ctttcccaaa aatcccggcc tgtgttacgg gttgctcctc atccagtttg gtccaacctg
      961 cattcggaag ttggttattc catggttcgg tgctgtagcc cgcataccaa ccgctggctt
     1021 gtaatgcagg gagcacagga ccgaattctt gcaggtattt tcctgaaata tgcaactgca
     1081 tgctgaaata atggccccac caaaaaaagg agcggatggc aaagtggcct tctgtttctg
     1141 aaaagcatcg aggataatcg agcattaccc agggcatgtc ttcatacttt tcacccctgg
     1201 aaattttagg cgaccacaca gccaactctg gataccctga ggcagacctg gcaaatactt
     1261 tccggtagtc atctgccagt tctccgaaaa tctcgtacac tgcgtctatc acccggttct
     1321 tcgttaaaat aaaatcgggc acagcagcca tctgccattc tgcatctgaa agtgctactt
     1381 ttgacaactc cattggcaaa ctcattttta ggtagtgatc aagcaactcg acaaactcat
     1441 actgaaggcg tttattggtc cgttccttgc cacctttctt atagccatct tcgtactgat
     1501 cctgcagttc ttctggctgt ggatcgatga ctttgtgggt aaaggtattg atatgcccac
     1561 gcttggcaag gtggtactgt atgtggcagc cagttgggtg ccggtagcat tgccattggc
     1621 catgctgctt tccaccatca tgacttttgg caacctaggt gaaacctacg aactggtggc
     1681 tatcaaagca gccggcattt cgctgcggcg cttcatgatg ccaattatgg cggccagttt
     1741 gttggtcgtg ggtgttgcct tcatgttcaa caactacatc attccggtgg tcaatctcag
     1801 gctgaacacg ctgaagtatg agatcgtgta ttcgaaaccg gcgttcgata tcaagccggg
     1861 cgtgttttat accaacatca acgggtatgt gatcaggctg ggaagtaagg atgctgatgg
     1921 ccagcgcctg aaagacatca tcatttacga acgaggcaat ttcctgcagg acaaccttat
     1981 tatggccgac cgcggctcaa tgaccgtgag cgacgataaa cgtttcctga aatttcacct
     2041 ggtaaatggt tctcgcattg aagaacgtgg catgcgtgcc gccaccaata ctgagttgat
     2101 acgggtcagt ttccaggaat acgataaagt atttgacctg acgagttttt tcaaagtgca
     2161 gtcgaatgac agcatgttca aagacaacta ccgcatgctg agtacacgtc aactcagccg
     2221 cttcatggat tcggtttcca aaaagaaaga ctcgctgcgc acaaggattg ttcgcgacat
     2281 cacgctgagt tttgatttca tgaaaagcca tgacagtggc aaactgaaac ccgttgttcc
     2341 cgccaagacc cccacttcaa ttaagcaaat cattcctgat agtgcccgcc ttacctccat
     2401 cgatatggcg ctttccaaga tttcggccgc caaaagcaat ggcgatgttt tttacgggga
     2461 atactcagcc cgcagccgcg atgtgaggga atacaatttg ggctggcacc agaaattcgc
     2521 attgtccttt gcctgctttg tcatgttcct gattggcgcg cctctcgggt ccattattcg
     2581 caaaggaggt attggtaccc cattggtatt tgccgttatt ttcttcgcca tctttcacct
     2641 gttgaatacc agtggcgaga aactggccaa ggaaggcgtg ttgccagtac ccataggcac
     2701 ctggctgccg tcattggtac tgatccctgt tggcattttc cttaccatca aggccatgcg
     2761 tgactcccaa ctgttcaaca aggaattcta ttaccggtcg gtggtgcagc tgaaaaaatt
     2821 caccagccgg attacccgca aatctcccaa cgatcattcg taaattcaac tgccatgaac
     2881 agaagaaatt ttctcggtca aaccgccaaa gcaaccaccg gaacactgct ggcaggtagc
     2941 attattgctg taactgaaag ttgcagcagt agcaaaaaaa caggcagtag caataagtat
     3001 tacaaagatt cgccaggcct tacacaggcc ccattgggct acgactacaa agcgctgcag
     3061 ccagccattg atgccatgac aatggaaata caccatacca agcatgcagc ggcctatacc
     3121 aaaaacatga cagaagcact ggctgcggaa atgccggatg ccaaacacct ggaagacgtt
     3181 ttcagcagta tctccaaata cagcgccaaa ctgcgcaaca acgctggcgg ccattacaac
     3241 cacgagagct actggcgctg gatgaccccc ggcggcaaag ccatgtctga tgctttcaaa
     3301 accaacatag aaaatgcttt tggttcagtg agcgacatgc gcagcaaatt caatgctgcc
     3361 gccacctccc gctttggaag cggctgggcg tggctggtat taggtgccga taaaaaattg
     3421 cagatcggca gcactcccaa c
//
LOCUS       DATIQF010000140         2649 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_230352,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000140 DATIQF010000000
VERSION     DATIQF010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2649
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230352"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            349..723
                     /locus_tag="VLL95_02225"
     CDS             349..723
                     /locus_tag="VLL95_02225"
                     /inference="COORDINATES: protein motif:HMM:NF022769.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3127 domain-containing protein"
                     /protein_id="HSR37705.1"
                     /translation="MAYEMTGKIAAIYPTVQRTETFKTREFVVEKTEDIGSRTITNYA
                     KFQCVQDKTALLDKLKVGDDVKVHFNIKGTKWVKEGRENYITNLDAWRIENFVPGGAP
                     QGAPDQFVDMPPADFAPDDLPF"
     gene            770..2368
                     /locus_tag="VLL95_02230"
     CDS             770..2368
                     /locus_tag="VLL95_02230"
                     /inference="COORDINATES: protein motif:HMM:NF044849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HSR37706.1"
                     /translation="MQKLVDLRVLPSEAADDAVIRKLLAGEAGVAASRITGYFKTRQS
                     IDARGKTVWMNLQVNVFIDEPFQQRPHYPFHFREVRNADRQVIIVGAGPAGLFAALRC
                     LELGVKPIILERGKDVRSRRRDLAAMNKQGEVNPESNYCFGEGGAGTYSDGKLYTRSN
                     KRGDVNRILQLLVHFGAEEKILFQSHPHIGTNKLPHIITAIREHIIACGGEVHFEAKV
                     TGLLLNGDQLTGVQTADGSQWKGEACLLATGHSARDVFALLHQQNILIEPKPFALGVR
                     IEHPQAIIDSAQYHCLVRDEYLPPASYSLVHQADGRGVFSFCMCPGGIIAPAATAPGE
                     IVVNGWSPSKRNNPFANSGMVVEIRLSDLPSIRKDIEQVVGVPSSALDSPLGMMYFQQ
                     YVERKAFAAGGGKLVAPAQRMIDFVNKKASPDLPDCSYLPGIAPADLGTVLPGFVAHT
                     LREGFKAFGKKMKGYYTNEAVVVATESRTSSPVRIPRDPITHQHPQIKGLYPCAEGAG
                     YAGGIVSAAMDGENTIAKAIEQWR"
BASE COUNT          661 a          703 c          688 g          597 t
ORIGIN      
        1 gttcacattg gcagcgtaag gtgccagcat ggtttgcata ctgctgacac ccgtaccggg
       61 cttcacatcg tacttgctgt aggctacttt gctggcaggc tggtacaatg ccggcgagca
      121 ggcggtcatc agcagcgcca aaagcagtaa agaagagttg cggattctca taaggggcgg
      181 caaaattgca agtcaaagta ctaaccttcc aaatttgctt tcatgacgaa taaaaaaatg
      241 ctgaaagcaa aatgaatgta gctttaccgc ccattttttt catcaaaccg gctgctacgg
      301 atacttattt tgaagaccgt caaccaaccg gaattaagaa ctctcaacat ggcctacgaa
      361 atgaccggca agattgccgc tatttatcct actgttcagc gtaccgaaac tttcaaaacc
      421 cgcgaattcg tggtggagaa aacagaagac attggcagcc gcaccattac caattatgcc
      481 aagtttcagt gcgtacaaga taaaaccgcc ctcctcgaca agttgaaagt gggcgatgac
      541 gtgaaggtgc acttcaacat caagggcacc aagtgggtga aagagggacg tgagaactac
      601 atcaccaacc ttgatgcctg gcgcattgaa aactttgttc cgggtggtgc cccccagggt
      661 gctcctgacc agttcgtgga catgcccccg gccgatttcg ccccggatga cctgccgttc
      721 tgatggaaag ccgattgatt ttttaggata gaaacctgaa catcgaacta tgcaaaaact
      781 ggttgacctg cgggtgctgc cttcggaggc ggcagatgat gcggtcattc gcaaactgct
      841 ggctggcgaa gctggcgtgg ccgcatctcg cattaccggg tatttcaaaa cccggcagtc
      901 gattgatgcc cgtggtaaaa ccgtgtggat gaacctgcag gtaaatgtgt tcatagatga
      961 accatttcag cagcgtccgc attatccgtt tcatttcagg gaagtacgaa atgccgacag
     1021 gcaggtaata atagtaggcg caggacctgc cgggttgttc gcggcactgc gctgcctgga
     1081 actgggcgtg aaacccatca tactggaaag ggggaaggat gtacgcagcc ggcgccgtga
     1141 tttggccgcc atgaacaaac agggcgaagt aaatcctgaa agcaattact gtttcgggga
     1201 aggcggggcc ggcacttaca gcgatggcaa actgtatacc cgcagcaaca agcggggcga
     1261 tgtcaaccgc atcctgcaac tgctggtgca ttttggcgcc gaggaaaaaa ttctcttcca
     1321 gtcgcatccg catattggca ccaacaagct gccgcatatc atcaccgcca tccgcgaaca
     1381 catcattgcc tgcggaggtg aagtgcattt tgaagccaaa gtgactggct tgctgctcaa
     1441 cggcgatcaa ctcaccggcg tgcaaaccgc cgacggctca caatggaaag gagaggcctg
     1501 cctgctggcc accggtcatt cggcccgcga tgtgtttgcc ctgctgcatc agcaaaacat
     1561 tctcatcgaa cccaagcctt ttgccctggg cgttcgcatt gagcatccgc aagccattat
     1621 tgattcggca caataccact gtttggtacg ggatgaatac ttgccaccgg cctcctacag
     1681 cctggtgcac caggccgatg gaaggggcgt attctcattt tgtatgtgtc ccggaggcat
     1741 catagcgcca gccgccactg cccccggcga aattgtggtg aatggctgga gccccagcaa
     1801 gcgcaacaat ccttttgcca atagcggcat ggtggtggaa atacgattga gcgaccttcc
     1861 ctctatccgc aaggatattg agcaagtggt gggtgtaccc tccagcgcat tggatagccc
     1921 gctggggatg atgtattttc agcaatacgt ggaacgcaaa gcctttgcag ccggcggagg
     1981 aaaactggta gcgccggcac aacgcatgat tgatttcgtc aacaaaaagg catcgcccga
     2041 tctgcccgac tgttcttatt tacccggcat tgcgccggcc gatttgggta ctgtgttgcc
     2101 gggcttcgtg gcacataccc ttcgcgaagg tttcaaggca tttggcaaaa agatgaaagg
     2161 gtactatacc aatgaagcgg tggtggtagc taccgaaagc cgcacctcct caccggttcg
     2221 aattccccgc gatcccataa cccatcagca cccgcaaatc aaagggcttt atccctgtgc
     2281 cgaaggcgcc gggtatgccg ggggaattgt aagtgcggct atggatgggg agaataccat
     2341 tgccaaagcg attgaacaat ggcgctagca ttttccgctg gtcttttgct gccttttaat
     2401 tattaatcgc tccttaccac tcatggaatt gaaatgtgcc aaaccacatt cgacttatct
     2461 tcattccacc tatcctaact tcttatggca ctattacagg tcaacaatct ggtgaagcgt
     2521 tttgcaacac agctcgccgt cgatcacgtc agtttctcta tcgaacaagg aaccatcttc
     2581 gggatgctgg gccccaacgg cgccggcaaa acgaccctga tccgaatgat caccggcatt
     2641 ttttacccc
//
LOCUS       DATIQF010000141         1826 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_2239, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000141 DATIQF010000000
VERSION     DATIQF010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1826
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2239"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(78..680)
                     /gene="hisH"
                     /locus_tag="VLL95_02235"
     CDS             complement(78..680)
                     /gene="hisH"
                     /locus_tag="VLL95_02235"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR01855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HSR37707.1"
                     /translation="MKTVAIIKYNAGNIRSVLFALERLGVEAVVTDDHEQIRKASHVI
                     FPGVGAANSAMPYLQERGLDTLMRSLTQPFLGICLGMQLMCRHSEEGDTPCLGMFDIE
                     VKRFPPTDADGLRLKTPHMGWNALYDLRSPIMKDVKEGDYVYFVHSYYAELSTHAIGT
                     CNYGLPFSAALHKDNFYGVQFHTEKSAGPGEQILKNFLTL"
     gene            complement(783..>1826)
                     /gene="hisB"
                     /locus_tag="VLL95_02240"
     CDS             complement(783..>1826)
                     /gene="hisB"
                     /locus_tag="VLL95_02240"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF003937.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004401 - histidinol-phosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HSR37708.1"
                     /translation="DVFKYMRLIAEELDYELVLVTNQDGLGTDSFPEPTFWPVHNFVM
                     RSLAHEGIQFADELIDRSFAHENKPTRKPSIGMFGRYLDNPEYDLVNSFVIGDRITDV
                     QLAKNLGCKAIWMNADPNLGLNDTAMDVQVLRANTVALETTEWKKIYEFLKLGMRVVQ
                     HERNTKETQISVALNLDGSGKAAIQTELGFFDHMLDQIARHGNIDLAVQVNGDLHIDE
                     HHTIEDTGIALGEAFAKGLADKRGMERYGFCLPMDDCEAQVSIDFGGRNWIVWEAEFK
                     REKIGDMPTEMFFHFFKSFSDASKCNLIVRATGSNEHHKIEAIFKAFAKAIKMAVKRE
                     PSKLFLPSTKGVL"
BASE COUNT          406 a          481 c          454 g          485 t
ORIGIN      
        1 actttttcgt tgaaatagaa cagcactaat cagccagtag aacatttagt gagccacaag
       61 tctcccttta gggagattca gagggttaaa aagtttttca gtatttgttc gccggggcca
      121 gcgcttttct ctgtatgaaa ctgcaccccg taaaaattat ccttgtgcaa ggccgcactg
      181 aatggcaatc cgtagttaca ggtaccaatg gcatgtgtac tcagctccgc ataataactg
      241 tgcacgaagt acacatagtc gccttccttc acgtccttca tgattggaga acgcaggtcg
      301 tacaaagcat tccagcccat gtgtggtgtt ttcaatcgca acccgtccgc atcggtgggt
      361 gggaaacgtt ttacttcaat atcaaacatg ccgagacaag gcgtatcgcc ttcttcgctg
      421 tggcggcaca tcagttgcat gccgaggcaa atgcccagga agggttgtgt gagcgaacgc
      481 atcagcgtat caagcccccg ctcctgcagg taaggcatgg cgctgttggc agcccccacg
      541 cccgggaaga tgacatggct ggctttgcgg atctgttcat gatcatcggt tactaccgct
      601 tccacgccca gccgttccag tgcaaacaat accgagcgga tattgccggc gttgtatttt
      661 atgatggcga cggttttcaa gtttttggtt tgttgttttt agtttttggt tagaggctcg
      721 tgtagactat cacatttatc attcccccga tgcttcaact cgtgaactct ggaacttgtg
      781 aactacaaaa ctccttttgt agacggcagg aacaattttg aaggctcacg tttcaccgcc
      841 attttgatgg ctttggcaaa ggccttgaaa atcgcttcga tcttgtggtg ttcattgctg
      901 ccggtggccc gcacaatgag gttgcacttg ctggcatcgc tgaacgattt gaagaaatgg
      961 aagaacattt ccgtaggcat gtcgccgatc ttttcgcgtt tgaattccgc ttcccacaca
     1021 atccagttgc ggccaccaaa atcaatgctc acctgtgctt cgcaatcatc catgggcagg
     1081 cagaagccgt aacgctccat gccgcgtttg tcggccagtc ctttggcgaa agcctcgccc
     1141 agggcaatgc cggtgtcttc aatggtatgg tgttcgtcaa tgtgcaagtc accattcacc
     1201 tgcacagcca aatcgatatt gccatgacgg gcaatctggt ccagcatgtg atcgaaaaag
     1261 ccaagctccg tttggatggc ggctttgcca ctgccatcga gattgagcgc cacgctgatc
     1321 tgcgtttctt tggtgttgcg ttcatgctgt accactcgca ttcccaactt caggaactcg
     1381 tagatctttt tccattctgt cgtttccagc gctacggtgt tggcgcgcaa gacctgcacg
     1441 tccatggcgg tatcattcaa tcccaggttg gggtcggcat tcatccagat ggctttgcag
     1501 cccaggttct tggccagttg cacatcggtg atgcgatcgc caatcacaaa ggaattgacg
     1561 aggtcatact cggggttgtc cagataccgg ccaaacatgc cgatgctcgg cttgcgggtg
     1621 ggtttgtttt catgcgcaaa actccggtcg atcagttcat cggcaaactg gatgccttca
     1681 tgcgccaggc tgcgcatcac aaaattgtgt accggccaaa aggtaggctc cgggaaactg
     1741 tcggtaccca gcccatcctg gttagtcacc agcaccagtt cgtaatccag ttcctccgct
     1801 atcagccgca tgtatttgaa cacatc
//
LOCUS       DATIQF010000142         1942 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_139214,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000142 DATIQF010000000
VERSION     DATIQF010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1942
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139214"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..548
                     /locus_tag="VLL95_02245"
     CDS             <1..548
                     /locus_tag="VLL95_02245"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HSR37709.1"
                     /translation="DDLIRPGDLLHVDIGITYLRLNTDVQQHAYVRRPGETTLPESLR
                     KAMINANRLQDILTTQFKEGKTGNQVLLSALDQAKREGISATIYTHPLGLHGHAAGPT
                     IGLWDQQGGVPGSGDYPIYPRTAYSIELNAATDIPEWKKSIRIMLEEDGYFDGQGFRY
                     ISGRQKEIYLIPRVQVHISGS"
     gene            729..1850
                     /locus_tag="VLL95_02250"
     CDS             729..1850
                     /locus_tag="VLL95_02250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37710.1"
                     /translation="MTRKYLFATIGFFTCINAIGQVFTNREIDPLDSLALVEAKKKEY
                     PYVLPILGKKAAAAGFDLPYSAGVNVQYFTQTSDIILENLKVGFNGGELYDLSGLVKF
                     DLAKARASAITVRPDVWLFPFLNVYGILGRAQASTEVKYRVDVPEDINNTIPIFSGSS
                     LVEFQTTTFGFGVMPAIGIKGAFFILDMNIAWTDVPQLSRPTRTFVIGPRIGKNFALR
                     KPEQSIAIWVGGFRVSLDAASEGSLPISEALDVDDLGGRIDVAASKVDAGQTKVDNWW
                     ASLSPIEQRNPLNIARYNAANRVLTTAGNLVAAADNAINMAANSTVEYSLDRRPKDPW
                     NFLTGIQYQFNKHWMFRAEAGYFSSRTQFTFGLQYRFGL"
BASE COUNT          527 a          444 c          474 g          497 t
ORIGIN      
        1 aggacgacct gatccggccg ggagacctgc tgcatgtaga cattggcata acttacctgc
       61 gattgaatac ggacgtgcag caacatgcgt acgtacgccg gcccggggaa accacgcttc
      121 ccgaaagcct gcgcaaagcg atgatcaacg caaaccgcct gcaggatatc cttaccacac
      181 agtttaagga aggaaaaacc gggaaccagg tactgttatc cgcgctggac caggccaaac
      241 gggaaggcat atccgcaacc atttacacgc acccgctggg cttgcacgga cacgcggcag
      301 gacctactat cggtctctgg gaccagcaag gcggcgttcc gggcagcggc gattatccca
      361 tctacccgag gactgcctac tccattgaac tcaatgcagc aaccgatatt cccgagtgga
      421 aaaaatccat caggatcatg ctcgaagaag atggatactt tgatggccag ggcttccggt
      481 atatcagcgg caggcaaaag gaaatctacc ttatccccag ggtgcaagtg cacattagtg
      541 gatcatgagg ctattacaaa ttttgtccgc ctcccgtgta accttttgag ggaaaggaca
      601 ccaaatcctt gtcatgacat gatctcctgg atgttgaacc aggatatgca atgcgataat
      661 tctgaatctt tttttatgag ttctgtttta attgctaaaa ttgccgacag aaaagttctt
      721 tcatgtgtat gaccagaaaa tacttatttg ccactattgg gtttttcacc tgtataaatg
      781 ctataggtca ggtatttacc aatcgggaaa ttgaccccct tgattcattg gcattggttg
      841 aagccaaaaa aaaagaatac ccttacgtgt tgccgattct tggtaagaaa gctgctgctg
      901 ccggcttcga tttgccatac tcggccgggg tgaatgtgca atattttacg caaacctcgg
      961 atatcattct tgagaacctg aaagttggtt tcaatggcgg agaactgtat gacctatcag
     1021 gtctggtgaa gtttgacctg gcaaaggcac gtgcatcggc cattaccgta cggcctgatg
     1081 tctggctgtt tcctttcttg aatgtgtatg gcattctcgg aagggcgcag gcctccacag
     1141 aagtaaaata ccgggtggat gttcctgaag acattaacaa taccataccc atattttcag
     1201 gctcttctct ggttgaattc cagacaacga cttttggctt tggcgttatg cctgccatag
     1261 ggattaaagg cgccttcttt attctggata tgaacatagc atggaccgac gtgccgcaac
     1321 ttagcaggcc taccagaacc tttgttattg gtcccaggat tggaaaaaat tttgcgcttc
     1381 gaaaacccga acaatccata gcaatctggg tgggcggatt cagggttagt ttagatgcag
     1441 cctcggaagg atctttgcca atcagcgaag cattagacgt cgatgatttg gggggcagga
     1501 ttgatgttgc agccagtaaa gtagatgccg gacaaacgaa agtggataat tggtgggcat
     1561 ccttatcccc aatcgaacaa agaaatccgc taaatattgc ccgttacaat gctgcgaaca
     1621 gggttttgac aactgcagga aatttggtgg cagcagccga caacgctatc aatatggctg
     1681 ctaactcaac cgttgaatat tctctcgaca gaaggccgaa agatccctgg aattttttga
     1741 caggaattca gtaccaattt aataaacact ggatgtttag ggcggaggcc ggctattttt
     1801 catccaggac acagtttacc ttcggtttac aatacagatt tgggttgtaa gtcaagcaga
     1861 atctgttagc ctgcgttcag tgctcatttg ctttgttgtt ggcgaagcaa gaagaaaata
     1921 tagtctccaa aacaagatct gt
//
LOCUS       DATIQF010000143         2138 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_93455, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000143 DATIQF010000000
VERSION     DATIQF010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2138
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93455"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..828
                     /locus_tag="VLL95_02255"
     CDS             <1..828
                     /locus_tag="VLL95_02255"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HSR37711.1"
                     /translation="KMTIVIDDGNVTINGKPADQYKGDGRIIIDDDIVINGNMVRVPG
                     ARGGVTVRKAEPRAFLGVSTEKDEKGARVSEVIEESAAQKAGLQNNDIITSVNGVKVS
                     DSESLLEAVRKCKPGQQVDVAFLRDGKEKKVKATLGKTDDAYAFTMPQDYMQGFDRNF
                     NFRMVEPPMMPGAPRGMWYWNEDRPKFGMGVEDNPDGDGVKVSNVEAESQAAKAGLQK
                     DDIITEVEGKTIKNVDELREELAEGRDKPSLSVKVLRSGKAETLTLRVPKKIKTAEL"
     gene            920..>2138
                     /gene="gatB"
                     /locus_tag="VLL95_02260"
     CDS             920..>2138
                     /gene="gatB"
                     /locus_tag="VLL95_02260"
                     /inference="COORDINATES: protein motif:HMM:NF004014.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HSR37712.1"
                     /translation="MATSYETVVGLEVHIQLLTQTKLFCADSTHFGAAPNSQVSPISL
                     AHPGTLPILNKEAVQLAIKLGLALHCDIARHSHFDRKHYFYPDLPKGYQTSQLTEPIL
                     NGGFVDTSFGRVPIHHIHLEEDAGKSIHDADPDYSCIDLNRAGMPLLELVTDPAIHSS
                     DQAFAFLTELRKLVRWLGVCDGNMEEGSLRCDANISVRPVGEKKLGTKVEVKNLNSIR
                     NVKRAIDSEVQRQIAMLERGERIVQETRGYNADNNSTSPQREKEEANDYRYFPCPDLP
                     PFTTTDEQVAAIRETMPALPHALQQQWVSQYQLPLQDAQVLTEDRAIADYFSQLLAAG
                     APAKPAANWMIGPVKSWLNEQQAEMEQFPVGAGQMAAVIDIVQGGKVNFSMAATRLLP
                     ALIREPNAVVAALA"
BASE COUNT          582 a          576 c          578 g          402 t
ORIGIN      
        1 aaaatgacca ttgtaattga tgatggcaac gtgaccatca atggcaaacc cgctgatcaa
       61 tacaaaggcg atggccgcat catcattgat gacgatatcg tgatcaatgg taacatggtg
      121 cgtgtgcccg gtgcccgtgg aggtgttacg gtgcgcaagg cagaaccgag ggctttcctc
      181 ggggtatcta ccgaaaagga tgaaaaaggt gcacgggtga gtgaagtgat tgaagaaagt
      241 gctgcgcaga aagccggcct tcagaacaat gacatcatca ccagtgtaaa cggcgtaaaa
      301 gtgagcgaca gcgaaagcct gctggaagcg gtgcgcaaat gcaagcccgg tcagcaggtg
      361 gatgtagcct ttttgcggga tggcaaagag aaaaaagtga aagccacttt gggaaaaaca
      421 gatgatgcct atgcttttac gatgccgcag gattacatgc agggtttcga ccgcaatttc
      481 aatttcagga tggtagaacc tcccatgatg cccggcgccc ctcgtggcat gtggtattgg
      541 aatgaggacc gcccgaaatt cggcatgggc gtggaagaca acccggatgg cgatggcgtg
      601 aaagtgagca atgtggaagc ggaaagccag gcagccaaag caggcctgca gaaagacgat
      661 atcatcaccg aagtagaagg aaagaccatt aagaatgtgg atgaacttcg ggaagaactg
      721 gctgaaggtc gcgacaaacc gagcctttcc gtaaaagtgc tgcgcagtgg caaagcagaa
      781 acgctgaccc tgcgggttcc caagaagata aagactgccg agctgtaacc acttctcata
      841 ccctacagtt ttagatggcc gcttgcttct gcaggcggct ttctttttag ggcaagcagc
      901 ctgccattac atttgcgcca tggctacatc gtacgaaaca gtggtgggat tggaagtgca
      961 catccagctg ctcacccaaa ccaaactctt ttgcgccgac agcacccatt ttggcgccgc
     1021 acccaacagc caggtttctc ccatcagcct ggcgcatccc ggcacactcc ccatcctcaa
     1081 caaagaagcc gtgcagttgg ccatcaaact ggggctggcg ttgcattgcg acattgcccg
     1141 ccacagccac ttcgaccgca aacattattt ctatcctgat ttacccaaag gctaccaaac
     1201 atcgcaactc accgaaccca tattgaacgg tggttttgta gacacttcgt ttggcagggt
     1261 gcccattcac cacattcacc tggaagaaga tgccggcaaa agcatccacg atgctgatcc
     1321 cgattacagt tgtattgact tgaaccgggc cggcatgccc ttgcttgagt tggtaaccga
     1381 ccctgccatc cacagcagcg accaggcttt tgctttcctc acagagctgc gcaaactggt
     1441 gcgctggctg ggcgtatgcg atggcaacat ggaagaaggc agcctgcgct gcgatgccaa
     1501 catctccgtg cgtccagtgg gcgaaaaaaa actgggcacc aaagtggaag taaaaaacct
     1561 caacagcata cgaaatgtaa aacgggccat tgactcggaa gtgcaaaggc aaattgctat
     1621 gctggaaaga ggggaacgca ttgtgcagga aacccgcggc tacaatgccg acaacaacag
     1681 caccagcccg caacgcgaaa aagaagaagc caacgactac cgctatttcc cctgccccga
     1741 tctgccgcca ttcaccacca ccgatgaaca ggtagccgcc atcagggaaa caatgccggc
     1801 attgccgcat gcactgcagc agcaatgggt atcgcaatac cagctgccct tgcaggatgc
     1861 acaagtattg acggaagacc gcgccatagc ggattatttc agccagttgc tggcagcagg
     1921 cgcccctgcc aaacccgccg ccaactggat gatcggcccg gtaaaaagct ggctcaacga
     1981 gcagcaggcc gaaatggaac agttcccggt tggtgccggc caaatggcgg cggtaattga
     2041 cattgtacaa ggcggcaagg tcaacttcag catggcagcc acccgcttac tgcccgccct
     2101 catcagagaa ccgaatgcag tggtggcagc gctggccc
//
LOCUS       DATIQF010000144         9954 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_108757,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000144 DATIQF010000000
VERSION     DATIQF010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 9954)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9954)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9954
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108757"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(111..1409)
                     /locus_tag="VLL95_02265"
     CDS             complement(111..1409)
                     /locus_tag="VLL95_02265"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HSR37713.1"
                     /translation="MSSRRSFLGKVAAGTSGAFGIQSIFNQLHAADLKQAFQLLDENN
                     PQSDATNEEFWTIFQQAYTVNPNIINLNNGGVSPAPRVVQEALRRYNDMANEGPSYYM
                     WRIMDQGREPLRSKLAQLGGCDPEEIAINRNTTEALLTVIYGLPLQKGDEVVGTLQDY
                     PNMIQAWKQRQLRDGIVYKQISFDFPIEDDDAIVQKFADAMTPKTKVVHLTHIINWVG
                     QILPVRKIADMAHSRGAEVIIDAAHSFALLDYKIPELGGDYYGTSLHKFLSAPIGSGM
                     MWIKKEKIEKIWPLICADKPNSSDIRKFENLGTRSFCIEQAIGEAVNFQEAIGSLRKE
                     NRIRYLKNYWAEKALQIPKVKINTSLKPAYSCSIAGVSIDGMKPADLENKLFSKFKIH
                     SVAIVWENISCVRITPHVYTRIQDLDRLVMALEQIAAGKV"
     gene            complement(1508..2197)
                     /locus_tag="VLL95_02270"
     CDS             complement(1508..2197)
                     /locus_tag="VLL95_02270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37714.1"
                     /translation="MMNQKVFVAFAVISLTLIGLDTRAQKSVGNPLFLHMHDNMVKVD
                     KYANVNGTPFLNDEWQMAAVMLANDVLAENVKVRINLLENTLHYLDEEGKEMVSTQPI
                     KSVVFKNAASDTSAVFVTRRFVKEGGEKLPDAWMQLLQKGKASLLKMVHKELKDDPKQ
                     YGSATVTQSIVTDMRYYVWYQNELTRVKNVTEIADLLVNSKLYARVDKMKKNSKSEED
                     MRSAIAYFNNL"
     gene            complement(2249..3322)
                     /locus_tag="VLL95_02275"
     CDS             complement(2249..3322)
                     /locus_tag="VLL95_02275"
                     /inference="COORDINATES: protein motif:HMM:NF012678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase family
                     protein"
                     /protein_id="HSR37715.1"
                     /translation="MQFRNFKMVGYVVYGRGSFNQLDGILAPHRKEGAPMVFLLDHYF
                     KGKALENRIPLRGNDKLLYADVTHEPKTTQVDALAQQLKDEFGTVSGIIGIGGGSTMD
                     LAKAVSLMMTNPGSSADYQGWDLVKLPGVYKVGIPTLSGTGAEVSRTTVLTGPTRKLG
                     MNSDFTPFDQIVLDPELTKDAPKNQRFYTGMDCYIHCIESLEGTYLNEFSKSYGEKAL
                     ELCRDVFLDADEWTDECDDKLMMASYAGGMSIAYSQVGVAHAVSYGLSYLLGTKHGIG
                     NCIVFDKLEEYYPTGVAEFKRMVKKDGYAIPQGICKNLTDEQFDTMINVSLGMKPLWE
                     NALGKDWEKIMTRQKLRALYERL"
     gene            3463..5040
                     /locus_tag="VLL95_02280"
     CDS             3463..5040
                     /locus_tag="VLL95_02280"
                     /inference="COORDINATES: protein motif:HMM:NF037725.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ligase PGM1-related protein"
                     /protein_id="HSR37716.1"
                     /translation="MSDNYATPTMHWPPFHSSPVAPAEGSEEEKEIFRHLQDQLANQF
                     ETAFPDNLAAKTVVIIPSLTLDQEILQKIDGIVHYEERMLCMLMLLRMPRTHIVFVTS
                     VPIAPEIIDYYLHLLPGITGFHARQRLTLLSCFDSSPISLTQKILERPRLMERIVKCI
                     PPGHVAHMTCFNVTPLERSLSVKLNLPVYGCDPDLFSVGNKSNGRKLFRECGLNVPDG
                     FEDLNSETEIAEALVALKKRHPELRKAVIKINEGFSGEGNAIFTYPEALDVHSISPQR
                     MLQMMDRYMSIVARNLAWRDYLEKFRQMGGIVEVFLEGFVKASPSVQCRINPVGDCDV
                     ISTHDQVLGGDGDQVFLGAYFPAKKEYAVELANITLPLCQSLRDKGVIGRFGVDFMSI
                     KNIEGTWDHYAIEINLRKGGTTHPYIMLNFLTDGTYHADKGTYLIKSGQERYYFSTDN
                     LVDPLYRGLIPQDLIDIAMDNELMYNGASQEGVMFHMIGALSQYGKLGVVSIGKTPAD
                     ARSYYDRTKEVLFKNCQ"
     gene            complement(5128..5424)
                     /locus_tag="VLL95_02285"
     CDS             complement(5128..5424)
                     /locus_tag="VLL95_02285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37717.1"
                     /translation="MGKDSTCVDLWKNGRGDLFIRLPLQNLQSHLVVPVVDETMITFC
                     MDECTLNDILHWSPTPFATLQEGDTKRTMYLPDAEIALLHPNFTYSQLKDASAV"
     gene            complement(5645..6244)
                     /locus_tag="VLL95_02290"
     CDS             complement(5645..6244)
                     /locus_tag="VLL95_02290"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HSR37718.1"
                     /translation="MKNAFPNPFFHRFHETLNSYHPVSQEITRQFLDEFEPVSFKKGE
                     VLLRQGEVCKHLYYILKGGVRCFMLDENGKEVNLHFYFEDELASEFKSLRTEEPSERN
                     LVAMVPTKALKAAKPDYIPVLESNIEFMQAALRFFQEKFLQEEQHSEMLRKLSAEERY
                     QHILSEQPHLLQRVSLTQLSSWLGLSRESLSRIRSKISS"
     gene            complement(6285..7013)
                     /gene="kdsB"
                     /locus_tag="VLL95_02295"
     CDS             complement(6285..7013)
                     /gene="kdsB"
                     /locus_tag="VLL95_02295"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: protein motif:HMM:NF003952.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HSR37719.1"
                     /translation="MNTIAMIPARYAATRFPAKLMQMLGPKTVIRHTYDNTVATGLFD
                     EVMVVTDSDIIYNEITNHGGKAKMSVKQHESGSDRIAEAIADMEVDIVVNVQGDEPFV
                     KKEPLQKLLQVFDGEAGAQVQVASLMQVLTHAESIADPNYVKVAVDLNMNSLMFSRSP
                     IPYHRDKNVTPVYYEHIGVYAFRKQALLQFTHWPMTPLEAAEKIECLRYLEHGIPLKM
                     VVSDYMGVEIDTPEDLVKARQLLD"
     gene            complement(7022..7318)
                     /locus_tag="VLL95_02300"
     CDS             complement(7022..7318)
                     /locus_tag="VLL95_02300"
                     /inference="COORDINATES: protein motif:HMM:NF014022.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-binding protein"
                     /protein_id="HSR37720.1"
                     /translation="MHQYFINASLQLIPIDHASKAMPQIDKAIDIIKASGLPSEVGPF
                     GTTVEGTYQQVTELIDTLNEMMAQNSEAEWVLNIQMHISPSANITMQGKTSKHR"
     gene            complement(7327..8376)
                     /locus_tag="VLL95_02305"
     CDS             complement(7327..8376)
                     /locus_tag="VLL95_02305"
                     /inference="COORDINATES: protein motif:HMM:NF021497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A deacylase LpxR family protein"
                     /protein_id="HSR37721.1"
                     /translation="MLSVRFPYYVLLLGLAGVLHSTCLQGQGVRYVKEGDSLVAKPIY
                     NHFRNEILMVSENDNYTMQIRDGYYTNGLMFRFSYVGNLKGNNTLRFDKKVQSFELGQ
                     QIFNPVRFDSIRLAGQDRPFAGYLYGRFEQKLFPTGTNSAIIWNASAGFTGKNSFAKQ
                     VQRWYHGVIGIYDVQGWHTQIASEFTLNLGATYARSFFAKPQEDRRYDISGVVQANLG
                     NAFTDAGAGILLRAGLMENYGNSAHWGSRISGEATTAPKHHKEFYFFIHPSVVWQGYN
                     AMLQGGMLTNGKSPRTVPIEPFYFVTQIGFKLAQNRGTLGMHYVNRTRQAAGQIRNEN
                     YLSIQIAYRTGNYKK"
     gene            complement(8403..8882)
                     /locus_tag="VLL95_02310"
     CDS             complement(8403..8882)
                     /locus_tag="VLL95_02310"
                     /inference="COORDINATES: protein motif:HMM:NF014668.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein RecX"
                     /protein_id="HSR37722.1"
                     /translation="MNQRANTLTPAQAWEKMKGWCAYQERCQQEVYQKLRQAGLTAME
                     ADTIIARLIEENYLNEERYAIQFAGGHFRQKKWGRQKILYALRQKQISEYCIKKAMQQ
                     IPAADYDETLMKLATAKWNAVKAGTPAQRWAKTKLYLLQKGYASNDVLAALQSLQKK"
     gene            9034..>9954
                     /gene="dnaN"
                     /locus_tag="VLL95_02315"
     CDS             9034..>9954
                     /gene="dnaN"
                     /locus_tag="VLL95_02315"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HSR37723.1"
                     /translation="MKFIVSSSLLLKQLQQINGVIQANNVLPILEDFLFEVNKGQLTV
                     TATDLETVMRVTLDVEAKDAGKVCVPAKILMDSLKNLPDQPLTFNIDKNYGIELTSDS
                     GKYKVMGENPDNFPKEPSADDTNSFAMTSTGLVTAINKTLFAVSNDDLRPAMTGVFFE
                     LMKDGLQFVATDAHRLVKYKRTDVSCPKTDNFIVPKKPLNLLKSALPDNEDEITVSYN
                     ANHLFVVHGTTQMSCRLIDARFPDYKVVIPVDNPYKMTVSKSDFQQALRRVSIFSNKS
                     TNQVALTITGSQLQLQAQDIDFSFEGSERMP"
BASE COUNT         2315 a         2468 c         2483 g         2688 t
ORIGIN      
        1 cttgtttcca ttttggcaag tcttgaaaat gctgttttgt atgtagcgat catagagagc
       61 tgcagctccg gatcaagtta ttttgatcat ttagtgaagt agtaaatgcc tcacactttt
      121 cctgccgcaa tttgctccag cgccatcacc agccggtcaa ggtcttgaat gcgggtgtac
      181 acatgtggcg tgatgcgcac acaactgatg ttttcccata cgatggccac cgagtggatc
      241 ttaaacttgc tgaagagttt gttttccagg tcggcaggtt tcatgccatc gatgcttacg
      301 cctgcaatgg agcaggagta ggctggtttc agcgaagtat tgatttttac tttcggtatt
      361 tgcagcgctt tttcagccca gtaattttta aggtagcgga tgcggttctc ttttcgcagt
      421 gaaccgatgg cttcctggaa attcaccgct tcgccaatgg cctgctcaat gcaaaagctg
      481 cgggtaccga ggttttcaaa cttgcggatg tcgctgctgt tgggcttgtc ggcgcaaata
      541 agcggccata tcttttcgat cttttctttt ttgatccaca tcatgccgct gccaatagga
      601 gcactcaaaa atttgtgcaa cgaagtgccg tagtaatcgc cgcccaattc ggggatcttg
      661 taatccagca aagcaaagga gtgcgccgcg tcaataatga cttcggcacc tcggctgtgt
      721 gccatgtctg caatcttcct gaccggtaag atctgcccca cccaattaat gatgtgtgtc
      781 aggtgcacca ctttggtttt gggcgtcata gcatcggcaa atttttgcac gatggcatca
      841 tcatcttcta tggggaagtc gaatgaaatt tgcttgtaca cgatgccatc gcgtaattgc
      901 cgctgtttcc aggcttgtat catgttggga tagtcctgca gcgtgccaac tacttcatct
      961 cctttctgca atggcaatcc gtagatcacg gtcagcaagg cctcggtagt attgcggttg
     1021 atggcgatct cctccggatc gcaaccaccc aattgtgcca gcttgctgcg cagcggttca
     1081 cggccctggt ccataatgcg ccacatgtaa taactgggcc cttcgttggc catatcgttg
     1141 tagcggcgca aggcttcctg caccaccctg ggggcggggc ttacgccacc attgttgagg
     1201 ttgatgatgt tcggattgac cgtataggct tgctggaata tggtccagaa ttcctcgttc
     1261 gtggcatcac tctgcggatt gttttcatcc agcaattgaa aggcctgctt cagatcggct
     1321 gcatgcagtt ggttgaaaat gctttgtatg ccaaaggcgc ctgaggtacc ggcggctact
     1381 ttgcccagga atgacctgcg agaagacatg agatagattt tgataaatgt aaaaacaatc
     1441 ttgcagcagc aatgaaaaat gccgcgaacc agtcgcggca tttccaggca tgcaaggagg
     1501 tgctctctta caaattgttg aaataggcaa tagccgatct catatcttct tccgatttcg
     1561 aattcttctt cattttgtcg acacgggcat acagttttga attcaccagc agatcggcaa
     1621 tttcagttac gtttttcact ctcgtcaact cgttctggta ccatacatag taacgcatat
     1681 cagtaacaat tgactgggta accgtggctg aaccgtattg cttggggtcg tctttcagtt
     1741 ctttgtgcac catcttcagg aggctggctt ttcctttttg taacaattgc atccaggcat
     1801 ccggcagttt ttcgccgcct tctttcacaa accttcgggt tacaaacaca gcggatgtat
     1861 cgctggcagc gtttttaaac actaccgatt tgatcggttg tgtagagacc atttctttgc
     1921 cttcctcatc aagatagtgc aaggtgttct ccagcaaatt gatacgcact ttcacgttct
     1981 ctgccagcac atcattggcc agcattaccg cggccatttg ccactcatca ttcaggaagg
     2041 gggtgccgtt cacattggca tacttgtcca cctttaccat gttgtcgtgc atgtgcaaaa
     2101 acaacgggtt ccccactgat ttttgggccc gggtatccag gccaattaaa gtgaggctga
     2161 tgacggcgaa tgccacaaaa actttctggt tcatcattga gtatttgtca aagaatggag
     2221 aaagaatcta tccgttggtt ggagacaatt acagcctttc gtacagtgcc cgcagctttt
     2281 ggcgggtcat tattttttcc cagtcttttc ccagcgcatt ttcccaaagc ggcttcatgc
     2341 ccaggctcac attgatcatg gtatcgaatt gctcatcggt aaggtttttg cagatgcctt
     2401 gtggtattgc gtaaccgtcc ttttttacca tgcgtttgaa ttcggcaacg cctgtagggt
     2461 aatactcttc caacttgtcg aacacaatgc agttgccaat gccatgcttg gtgcccagca
     2521 aataactgag tccatagctc actgcatgcg ccacgcccac ctggctgtag gcaatgctca
     2581 tgccgccggc atagctggcc atcatcagtt tgtcatcaca ttcatcggtc cattcatcgg
     2641 catccaaaaa cacgtcgcgg cacagctcca gcgctttctc accgtagctc ttgctgaatt
     2701 cattgaggta ggttccctcg agactttcaa tgcaatggat atagcaatcc atgccggtat
     2761 aaaagcgttg gttcttgggt gcgtctttgg tcaactcagg atcgagtacg atctggtcga
     2821 aaggggtgaa gtcgctgttc atgcccagtt tgcgtgtcgg gccggtcagt acggtggtgc
     2881 ggctcacttc ggcgccggtt ccgctgaggg tagggatgcc cactttgtac acgcctggca
     2941 gttttacaag atcccatccc tggtagtcgg cactgctgcc ggggttggtc atcatcaggc
     3001 tcaccgcttt ggccaggtcc atggtgctgc caccgccaat gccaatgatg ccactcactg
     3061 taccgaactc atctttcaat tgttgcgcca atgcgtcaac ctgtgtggtt ttgggctcgt
     3121 gggttacatc ggcatacagc agtttgtcgt tgccacgaag cggtatgcgg ttttcaagcg
     3181 cctttccctt gaaataatgg tcgagtaaaa aaaccatggg agcgccttct ttccggtggg
     3241 gggccagtat gccatccaat tggttgaaac tgccgcggcc atacaccaca tagcctacca
     3301 ttttgaaatt tctgaactgc atatatgctc gatttgattg aagccacgaa gatagtcgaa
     3361 tgcggcttgc gggtggctgc cctgggtgac atgcatcatg gtttggttgc taattctatt
     3421 gttacttgtt agcctttccc cgttgcaaaa atttactgaa gcatgagcga caactatgcc
     3481 actccaacaa tgcactggcc tccttttcat tccagcccgg tagcaccagc cgaaggatcg
     3541 gaggaagaaa aggaaatatt caggcacctg caggaccagt tggccaatca gtttgaaacg
     3601 gcttttcccg ataaccttgc cgccaaaaca gtggtcatca ttcccagtct tacacttgac
     3661 caggaaatcc tccagaaaat tgacggcatc gtgcattatg aagaacgcat gctttgcatg
     3721 ctgatgttgc tccgaatgcc ccgaacccat attgtttttg tcaccagtgt gcccattgct
     3781 cccgagatca tcgattacta cctgcacctg ctgccgggca tcactggttt tcatgcccgc
     3841 cagcggctta ccctgcttag ttgtttcgat tcttccccca tatcgctcac acaaaaaata
     3901 ctggaacgtc cgcggctgat ggaacggatt gtgaagtgca ttccaccggg ccatgtagcg
     3961 cacatgacct gcttcaatgt aacgccgctg gagcggtctc tttcggtaaa actcaacctg
     4021 ccggtgtacg gctgtgatcc cgacctgttt tcagtgggca acaaaagcaa cggcagaaaa
     4081 ttgtttcgcg aatgtgggct gaatgtgccg gatggttttg aggaccttaa ttcagaaacg
     4141 gaaattgcag aagcgctggt agcccttaag aaaaggcatc ccgaattgcg caaagctgtc
     4201 atcaaaatca atgaaggttt ttcaggagaa ggcaacgcca tctttaccta ccccgaggcg
     4261 ttggatgtgc acagtatttc gccgcaacgc atgctgcaga tgatggacag gtacatgtca
     4321 attgtggcac gaaacctggc atggagagac tatttggaga agttccggca aatgggaggc
     4381 attgtggagg ttttcctgga aggatttgta aaggcatcac catcggtgca atgccgcatt
     4441 aatcctgtgg gtgattgtga tgtcatcagc acccacgacc aggtgttggg cggcgatggc
     4501 gaccaggtat tcctgggtgc ctatttccct gccaaaaaag agtatgccgt agaattggcc
     4561 aacattaccc tgccattgtg ccaaagcctg cgtgacaaag gggtgatagg gaggttcggg
     4621 gttgatttca tgtctatcaa aaacattgaa ggcacctggg accattacgc cattgaaatc
     4681 aacctgagga aaggaggaac tacgcatcct tacatcatgc tgaacttcct gaccgatggt
     4741 acttatcatg ccgacaaagg cacctacctt atcaaaagcg ggcaggagcg gtattacttc
     4801 agcaccgata atttggtgga tccgctgtac cgtggcctga tccctcagga tctcatcgac
     4861 attgccatgg acaatgaact gatgtacaac ggcgcctcac aggaaggggt gatgtttcac
     4921 atgattggag cactgagtca atatggcaag ttgggggtgg taagcattgg taaaacaccc
     4981 gccgatgccc gcagttatta cgacagaacc aaggaagtgc tcttcaaaaa ctgccaatga
     5041 aaaaagcgaa tcggtttccg cgattcgctc tttctgaata agggttcagg aatgatgata
     5101 ttggaaaggt tagtggtttg tcttttatca aactgccgaa gcatctttca gctggctgta
     5161 agtgaagttt ggatgcaaca atgcaatttc tgcatcaggc aggtacatgg ttcgttttgt
     5221 atctccttcc tgcagcgtgg cgaaaggggt tggactccaa tgcaggatat cgttcagtgt
     5281 gcattcatcc atgcaaaatg taatcatcgt ttcatccacc acaggcacca ccaaatgact
     5341 ctgcaggttt tgaagcggta aacgaataaa caggtcgcca cggccattct tccacaagtc
     5401 cacacaagta gaatccttac ccacaaggat tttaatgaac cgtagcgaat cctgtttttc
     5461 tacacccacc atcttaaaaa acctatgaaa actagtacgc ttggtctgtt ctcgattgct
     5521 gacacaaaaa tcattcaagc aattggcatt cacctgcggc atccgtcaca aagcaggttt
     5581 ggccccaatg caaaagccct gaaatgcttg atttcagggc tttttaacag gttgttgtat
     5641 agtgtcaact gctgatcttg ctgcgaatgc ggctgaggct ttcgcggctc aggcccagcc
     5701 acgatgaaag ctgggtgagt gaaacacgtt gcagcaaatg tggctgttcg ctaaggatat
     5761 gctggtaccg ttcttcggcc gataatttgc gcagcatttc gctgtgctgt tcttcctgca
     5821 aaaacttttc ctggaaaaaa cgcagggctg cctgcatgaa ttcgatgttg ctttccagca
     5881 ccgggatgta atcgggtttg gcggctttga gtgctttggt gggaaccatg gccaccaggt
     5941 ttctttcgct gggctcttct gtgcggaggc ttttgaattc actggccagc tcatcttcaa
     6001 agtaaaaatg caggttcacc tccttgccgt tttcatcgag catgaagcag cgcactccgc
     6061 ctttcaaaat ataatacagg tgtttgcata cttcgccctg gcgcaacagc acttctcctt
     6121 ttttgaagga gaccggctca aattcatcca agaactgcct cgttatttcc tgagaaacgg
     6181 gatggtagct gttgagtgtt tcgtggaaac gatgaaagaa gggatttggg aaggcgtttt
     6241 tcaatggatg tgttttgtag tgagtgaaaa atacggatag tttttcaatc cagtaattgc
     6301 cgggccttca ccaggtcttc aggcgtatca atttccaccc ccatgtaatc agataccacc
     6361 attttcaagg ggatgccatg ctccaggtat cggaggcatt caattttttc ggccgcttcc
     6421 aatggagtca ttggccaatg ggtgaattgc agaagggctt gtttgcggaa ggcgtataca
     6481 ccaatgtgct cgtagtatac gggggtcaca tttttgtcgc ggtggtaggg tatgggcgaa
     6541 cggctgaaca tcaggctgtt catgttcagg tccacggcca ctttcacgta gttggggtcg
     6601 gcaatgcttt cggcatgggt tagcacctgc atcaaactgg ccacttgcac ttgtgcgccg
     6661 gcttcaccat caaatacctg caacaacttt tgcaatggct cttttttcac aaagggttca
     6721 tccccctgca cattcaccac aatatccact tccatgtcgg caatggcttc cgcaatgcgg
     6781 tcgctgccgc tttcgtgttg tttcacactc attttggctt tgccgccatg gttggttatt
     6841 tcgttgtaaa tgatatcgct gtcggtcacc accatcactt catcaaaaag gccggtagcc
     6901 actgtattgt cgtaggtgtg gcggatcact gttttagggc ccagcatttg catcagcttg
     6961 gcggggaaac gagtggccgc gtagcgggcc ggtatcatgg caatagtatt catactgcaa
     7021 actaacgatg tttcgatgtt ttgccctgca tggtgatgtt ggcggaaggg ctgatgtgca
     7081 tttgaatgtt cagcacccat tctgcttcgc tgttttgtgc catcatttca ttgagcgtgt
     7141 cgatcaattc ggtcacttgc tggtaggtgc cttccacggt ggtgccgaaa ggtcctactt
     7201 cactgggcag gcccgatgct ttgatgatgt ctatggcctt gtcgatctgc ggcattgcct
     7261 tggaggcatg gtcaatgggg atcaattgca gcgatgcatt gataaaatac tgatgcatgg
     7321 agagtattac tttttgtagt tgcctgttcg ataggctatt tggatagaaa ggtagttttc
     7381 attgcgaatc tgccctgcag cctgtcgggt tctgttcaca taatgcatgc ccagtgttcc
     7441 gcggttttgc gccagcttaa aaccgatctg cgttacaaag taaaaaggct caataggtac
     7501 cgtgcggggg ctttttccat tggtgagcat gccaccctgc aacatggcat tgtagccctg
     7561 ccataccact gacggatgaa tgaagaagta aaactccttg tggtgtttgg gagccgtagt
     7621 ggcttcgccg gaaatgcggc ttccccaatg cgcactgttg ccataatttt ccatcaggcc
     7681 ggcccgcagc aaaatgccgg caccggcatc ggtaaaggca ttgccgaggt tggcctgcac
     7741 tacacccgaa atatcatagc gtcggtcttc ttgtggcttg gcaaaaaagc tgcgggcata
     7801 ggtggcgcca agattaaggg tgaactcact ggctatttgc gtgtgccagc cttgcacatc
     7861 gtaaatgcca atgacaccgt ggtaccagcg ctgcacctgc ttggcgaagg aatttttgcc
     7921 cgtaaagcct gccgatgcat tccagattat tgcgctgttg gtgcctgtgg gaaacaactt
     7981 ctgttcgaac cgtccgtaga gataacctgc aaagggcctg tcctggccgg ccagccgaat
     8041 gctgtcgaat cgtaccgggt tgaagatttg ctgtcccaat tcaaagctct gcactttctt
     8101 gtcgaagcgc agggtgttgt tgcctttcaa attgcccaca taactgaagc gaaacatcag
     8161 gccattggta taatagccat ccctgatctg catggtgtag ttgtcatttt ccgataccat
     8221 cagaatttca tttctgaaat ggttgtagat aggtttggca accaggctgt cgccctcttt
     8281 tacgtaccga acaccctggc cctgcaggca ggtgctgtgc agcacgccag ccagccccag
     8341 gagtaaaacg taataaggaa agcgtaccga aagcatgagg ggtcaatatt accaatagcc
     8401 gttcattttt tttgcaagga ttgcagggcg gccaaaacat cgttggaggc ataccctttt
     8461 tgcagcaggt ataatttggt tttggcccac cgctgtgccg gcgtgccggc tttcactgcg
     8521 ttccatttgg ccgtggccag tttcataagc gtttcatcat aatcggcggc gggtatttgc
     8581 tgcatggcct ttttgatgca gtattcgctg atctgctttt gtcgcagggc atacaatatt
     8641 ttttgacggc cccatttctt ctgccggaaa tgcccccctg caaactggat ggcataccgt
     8701 tcctcgttca ggtagttttc ttctatcagc cgggctatta tggtgtcggc ttccatggcg
     8761 gtaagaccgg cctgccgcag tttttgatac acttcctgct ggcagcgctc ctggtaggcg
     8821 caccagcctt tcattttctc ccaggcctgc gccggggtga gggtatttgc ccgttggttc
     8881 atgcagcctg caatttatca acagggctga ttttgggcgg gaatatccca aaaaaattgc
     8941 cttaggtttg tcgccgtcct gcatctttgc ggaaatggcc cccgcagggg caagcaacca
     9001 aactctagaa agcatacgct aaaaactgcc gatatgaagt ttatcgtttc ctcatcatta
     9061 ctgctgaaac aactgcaaca aatcaatggt gttatccagg ccaacaacgt gttgcccatt
     9121 ctcgaagatt ttttgtttga agtaaacaaa ggacagctga cggtgaccgc taccgacctt
     9181 gaaaccgtaa tgcgggtaac ccttgatgtg gaagcgaaag atgcaggcaa agtatgtgtg
     9241 cctgccaaga tcctgatgga ctctttgaag aacctgcccg atcagccgct cactttcaat
     9301 attgacaaga actatggcat tgagctgacc agcgacagcg gtaagtacaa ggtgatgggc
     9361 gaaaatcccg acaacttccc caaagagccg agcgccgatg ataccaacag ctttgccatg
     9421 accagcaccg gtttggtgac tgctatcaat aaaacactgt tcgctgtaag caacgacgac
     9481 ctgcgccctg ccatgacagg tgtcttcttc gaactgatga aagacggcct gcagtttgtg
     9541 gctaccgatg cccaccgcct ggtgaagtac aagcgtaccg atgtttcctg ccccaagacc
     9601 gacaacttca ttgtacccaa aaaaccgctg aacctgctga agagcgcctt gccggataat
     9661 gaagatgaaa taaccgtgag ctacaatgcc aaccaccttt ttgtggtgca tggtaccacg
     9721 caaatgagtt gccgactgat tgatgcccgc ttccctgatt acaaagtggt gatccctgtt
     9781 gacaacccct acaaaatgac tgtaagcaag agcgacttcc agcaggcgct gcgccgggtg
     9841 agcatcttta gtaataagag caccaaccag gtagcgctta ccattaccgg cagccagctg
     9901 cagctgcagg cacaggatat cgacttcagc tttgaaggca gcgaacgcat gcct
//
LOCUS       DATIQF010000145         4110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_291144,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000145 DATIQF010000000
VERSION     DATIQF010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4110
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291144"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2302)
                     /locus_tag="VLL95_02320"
     CDS             complement(<1..2302)
                     /locus_tag="VLL95_02320"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR37724.1"
                     /translation="MSFNNIKIAWRNLVKHRTTSFINLFGLAVGFGCFLLISAYVLDE
                     LSYDRFHEKADRIYRVNADIKFGGNEMKIAVSSDPMGATLKKDYPEVEQYTRIYNSSG
                     SRQIRKGSEYINEVAVCYADSTLFDVFTLPVIDGNASHALDAPNTVVISETAARKYFN
                     RTNVAGQVVEVMEDVPHPYKITAVIKDMPSNSHMRFDFIFSMDNLTDYQFGNFLSHNF
                     HTYILLKPGADPSAFKQHFQQVIEKYIFPQASQIMQLKSMKDFEAAGNRLQYSLIPLT
                     DIHLKSNRFPELRAPGNVHYVYIFSIAALFILLLACVNFINLATANSGSRSREIGIRK
                     VLGSERAALVRQFLSESVLIALFSVVMALLIIWAALGFFNDLSGKQFSMADFLMPGRL
                     GLVLSLAIVVGIVAGTYPALVISSFQPIAALKGKLKLSSSKSYLRNGLVVFQFFVATI
                     LIVSTIVVYKQITFIRNAKLGFTKEQVLLLDDTWVLRNNTDAFMNKLREMKGVEMVSK
                     AGFLPVTSSARSDNTYSMEPTMNPTNAFNMQTWRVDYDYIPLLDMKMVQGRNFSRDYG
                     ADSAAFIVNEACAKLMGGGNVIGRKFYTLEAPNVPPTVYTVIGVVKDFHYNSMHETIG
                     PLCMQLGNANWTIALKVSTTNLQPLINNIQSTFKSMAAGKPLSYRFLDESFDEMYKAE
                     QRVGNLALAFSIIAICIACLGLFGLATYMAQQRVKEIGVRKVLGASVANIVSLLSADF
                     VKLVAIAAVIAFPVAWYAMHSWLQDFA"
     gene            complement(2314..>4110)
                     /locus_tag="VLL95_02325"
     CDS             complement(2314..>4110)
                     /locus_tag="VLL95_02325"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSR37725.1"
                     /translation="FDFEYLMPWSVLREAGNDDPYWGNNSTRTYVLLKQNASFDAAMK
                     KVKPLKTRYDNEEPKWELFLYPMAKWHLYSSFSDGKEDGEGRILFVKLFAIVAAFILL
                     IACINFMNLSTARSEKRAREVGIRKVVGAQKQSLVLQFLGESLMLALLSGIMAVLLVH
                     LFLPSFGELIDRKMEVEYSNPWFWTGLLSFVIITGLLAGSYPAFFLSSFQPVKVLKGT
                     LQKANALIAPRKVLVVLQFTFSIILIICTIIVKQQIDHAQERDNGYDKQNLIYHLYTG
                     DIEKNSNLIRQELLSAGVATSVTKTSAPITQSWSDGWGQEWEGKDPNDRTDFYRYNQD
                     EKLGTTAGLQFIKGRDFDLAKYPTDSNGVIINESSLKVMKFKEPLGQIIRDNGREWHV
                     VGVIKDFILTNPYEPTRPMLIYGANSWLSTMLIRLNEKNNTSDNLKKAEAIFKKYNPE
                     YPFEFRFVDEEYNAKFENEKRTGILASLFAGLTIFITCLGLFGLATYMAENRIKEIGV
                     RKVLGASVASITTLMSREFLALVAISFLVASPIAWWMMHSWLSNYSYAVSVQWWVFAL
                     AALLALGISAISVSYQSIRAATSNPVKSLRTE"
BASE COUNT         1069 a         1023 c          974 g         1044 t
ORIGIN      
        1 aagcaaaatc ctgcagccag ctgtgcatgg cataccatgc cacaggaaag gcaataacgg
       61 cggcgatggc aaccagcttc acaaaatcgg ccgacaatag tgacacgata ttggccacgg
      121 aagcaccaag cactttgcgt acaccaattt cctttacccg ctgttgtgcc atgtaagtag
      181 ccaaaccaaa caatcccagg caggcgatgc aaatggcaat gatgctgaat gccaacgcca
      241 ggtttcccac ccgctgctcc gctttgtaca tctcatcaaa agattcgtcg aggaaccgat
      301 agcttaatgg ttttcccgct gccatcgatt taaaggtgga ttgaatgttg ttgatcagcg
      361 gttgcagatt ggtagtcgac actttgagtg caatggtcca gttggcattg cccaactgca
      421 tgcaaagcgg cccaatggtt tcgtgcattg aattgtaatg gaaatctttt accactccga
      481 taaccgtata aactgtgggc ggcacattgg gtgcttccag ggtgtagaat tttcgtccaa
      541 ttacattgcc gccccccatc aatttggcac aggcctcatt cacaataaat gcggctgagt
      601 ctgctccata atcgcggctg aaattcctgc cctgcaccat tttcatatcc agcagcggga
      661 tgtaatcata atccacccgc catgtctgca tgttgaatgc gttggtggga ttcatggtgg
      721 gctccatgga ataagtattg tcgctgcggg ctgaactggt gaccggcaag aacccggcct
      781 tcgataccat ttccacaccc ttcatctcac gcagtttgtt catgaatgca tcggtgttat
      841 tcctcagcac ccaggtatca tccaacagca gtacctgttc tttggtaaaa ccaagtttcg
      901 cattccgaat aaaggtgatc tgcttgtaca ccacaatggt gctgacgata agaatggtgg
      961 ccacaaaaaa ctggaacacc accaatccat tgcgcaggta gcttttggaa gaagacagtt
     1021 tcaatttgcc cttgagcgcc gcaataggct gaaaagaaga aatgaccaag gccgggtaag
     1081 ttccggccac tataccaacc acaatggcca gtgacagtac caaacccaag cggcccggca
     1141 tcaggaaatc agccatggaa aattgtttgc cggagagatc attgaagaag cctaaagccg
     1201 cccaaataat gagcaacgcc attacaaccg agaacaatgc gatcaatacc gattcagaca
     1261 ggaactgtct taccagcgct gctctttcgc tgcccaacac tttgcggata ccaatttcgc
     1321 gactgcggct gcccgagttg gcggtagcca ggttgatgaa attgacacag gccaacagca
     1381 aaatgaaaag agccgctatt gaaaaaatgt agacataatg aacattgcct ggcgctctca
     1441 gttcgggaaa acgattcgac ttgagatgaa tatcggtaag cgggatgagg ctgtactgca
     1501 gcctgtttcc ggctgcctcg aaatctttca tcgatttcaa ctgcatgatc tggctggcct
     1561 gcgggaaaat gtatttttca atcacctgct gaaaatgttg tttgaaagca gatggatcag
     1621 cgccaggttt cagcaggatg taggtgtgaa aattgtggct caggaaattg ccaaactggt
     1681 agtcagtcag gttgtccatc gagaaaataa aatcgaaccg catgtggctg ttggatggca
     1741 tatccttgat caccgcggtt attttatacg gatgcggcac atcttccatc acttccacta
     1801 cctggcctgc tacattggtg cgattgaaat atttgcgggc cgctgtttca gagatcacca
     1861 ccgtattggg tgcatcgagt gcatgtgatg cattgccatc aatcaccgga agcgtgaaca
     1921 catcgaacaa tgtggaatcg gcgtagcaaa ccgccacctc attgatatac tcgcttccct
     1981 tcctgatttg cctgctgccc gaagagttgt agatccttgt gtattgttcc acttcgggat
     2041 agtccttctt gagggtggcc cccatgggat cagagctcac cgcaattttc atttcattgc
     2101 cgccaaactt tatgtcggca ttcacccggt atatgcgatc tgccttttca tgaaagcggt
     2161 catagctcag ttcatccagc acataagcgc tgatgagcag aaaacatcca aagccaacag
     2221 ccagcccaaa caggttgatg aaagaagtgg tcctgtgttt gaccaggttt ctccaggcta
     2281 tttttatgtt attgaatgac atggcaaatt attttactcg gtacgtaatg attttaccgg
     2341 attggaggtg gcagccctga tggattgata gctcacggaa atagcggata tgcctaaggc
     2401 cagtagggcc gccagtgcaa acacccacca ttgcacgctg accgcataag aataattgct
     2461 gagccagctg tgcatcatcc accaggcaat gggagaagct accaggaatg aaatggcaac
     2521 caaggccagg aactccctcg acatcagggt ggtgatactg gccacactgg cgccaagcac
     2581 ttttcgaacc ccgatctctt tgatcctgtt ttccgccatg taggtagcca atccaaacaa
     2641 cccgaggcag gtgatgaaaa tggtgaggcc cgcaaacaaa gaagccaaaa tgccggtgcg
     2701 cttttcattc tcgaacttgg cattgtattc ttcatccaca aacctgaact caaacgggta
     2761 ttcgggattg tattttttga agatggcttc ggcctttttc aaattgtcgg aggtgttgtt
     2821 cttttcgttc agtcggatga gcatggtaga cagccaactg ttggcaccgt agatcagcat
     2881 gggtcgggta ggttcgtacg gattggtaag aataaaatct ttgatcacac ctaccacatg
     2941 ccattcgcgt ccattatcac gaatgatctg ccccaggggt tctttaaact tcatcacttt
     3001 caatgaagat tcgtttatga tcaccccatt ggaatcggtt ggatatttcg ccaggtcaaa
     3061 atctcttcct ttgatgaatt gcaagccggc agtggtaccc agcttttcat cctggttgta
     3121 ccgatagaaa tcggttctgt cgttgggatc tttgccctcc cattcctgtc cccagccatc
     3181 gctccagctt tgtgtaatgg gcgcactggt tttggtaaca ctggtggcca cccctgcgct
     3241 cagcaattcc tgcctgatga gattgctgtt cttctcaata tcaccggtat aaagatggta
     3301 gatgaggttc tgcttgtcat agccgttgtc acgttcttgt gcatggtcta tttgctgctt
     3361 tactatgatg gtgcaaatga tgaggatgat ggaaaaggtg aattgcaaca ccaccagcac
     3421 cttgcgggga gcaatgagtg catttgcttt ttgcagggta cccttcagta ctttcaccgg
     3481 ctggaaagaa gagaggaaaa aggcaggata actgccggcc agcaaaccgg tgatgataac
     3541 aaacgacaac aaacccgtcc aaaaccatgg gttgctgtac tccacttcca tcttccggtc
     3601 gatgagttcg ccaaaagaag gcaggaataa gtgcacaagt aacaccgcca tgatacccga
     3661 cagcagcgcc agcatcaatg attcgccgag gaactgcaaa accagcgatt gcttttgggc
     3721 gcccactact ttgcgaatgc ccacttcgcg ggcacgtttc tcactgcgtg ccgtgctcag
     3781 gttcatgaag ttgatgcagg cgatcagcag gatgaacgct gctacaatgg caaagagttt
     3841 tacaaacagg atgcgtcctt cgccgtcttc cttcccatca gaaaaactgc tgtacaaatg
     3901 ccatttggcc attggataca aaaacagttc ccatttaggt tcctcattat cataacgggt
     3961 tttcagcggc ttcacttttt tcatggccgc atcgaacgag gcattttgct tgagcagcac
     4021 atacgtcctg gtgctgttgt tgccccagta aggatcatcg ttaccggctt ctcttaaaac
     4081 actccatggc atcaggtatt caaaatcgaa
//
LOCUS       DATIQF010000146         2041 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_63043, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000146 DATIQF010000000
VERSION     DATIQF010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2041
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63043"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1157)
                     /locus_tag="VLL95_02330"
     CDS             complement(<1..1157)
                     /locus_tag="VLL95_02330"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HSR37726.1"
                     /translation="MPIQHLSQCSCQHCEEQRLLTEAEKKLHIEISENSRREFLRKAG
                     RLGLSLGIGGGLIHQPLAAASLNHDDAAYKSASMAKNKAVQDGKASMISLLHTADIHS
                     QLMIHDEFFMENGKPVFKKRGGFATLKTMINTLRNQNAANTLVIDGGDCFQGSGVASL
                     SQGQAIIPLMNNIGYDIMLPGNWEVVYGKEMMMKDMFAYDGVKVCANMFHDTKDELNG
                     DLIFPPYFVKHIGGLKLGFIGYNDPMTPKRQSPAYSEGIRFTFPEKNVAKYVKLLREY
                     EQCDLVFLITHMGLAQQVGLANMPEVKGVDYILGADTHERVREPINGVYTKVTEPGAF
                     ASFVARMDIVIENGQIKDHNYQLLDVDPEVYKEDDEMKRMVNEARAPYAKEL"
     gene            complement(1191..>2041)
                     /locus_tag="VLL95_02335"
     CDS             complement(1191..>2041)
                     /locus_tag="VLL95_02335"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HSR37727.1"
                     /translation="ERELVVYGSQLVAHTDQYFGPGGSINAITNGMNCQNCHLDAGRK
                     AWGNNYGAVASTYPKFRDRSGSVETISKRVNDCFERSLNGQAIDTNSREMQAIVAYIK
                     WLGKDVPKGEKPAGSGISDLPYLDRAASPENGKIVFQNKCLSCHGANGEGQLDENGRY
                     VYPPLWGPHSYNNGAGLFRLSRFAGYVMDNMPFKQATHDAPNLSNEEAWDVAAFVNSQ
                     PRPSRDLSHDWPDISKKPIDHPFGPYTDGFSEQQHKYGPYKPIVAARKAMKGKQEELK
                     GKTASK"
BASE COUNT          435 a          530 c          493 g          583 t
ORIGIN      
        1 agttctttgg cataaggcgc ccgggcttcg ttcaccattc gcttcatttc atcatcttct
       61 ttgtatacct caggatctac atcgagtaat tggtagttgt ggtcttttat ttgaccattc
      121 tcaatcacga tgtccatgcg ggccacaaag gaggcaaagg ctccgggctc tgtcactttg
      181 gtgtacacgc cattgatcgg ttctcttacc cgttcatgcg tgtcggcacc gagtatgtaa
      241 tcaacacctt tcacctcggg catgttggca aggcccacct gctgcgccag gcccatgtgt
      301 gttatgagaa aaacaagatc acattgttcg tattcccgca acagcttcac atatttggct
      361 acattttttt cggggaaggt gaacctgatg ccttcgctgt aggccggcga ttggcgtttg
      421 ggtgtcatgg ggtcgttata cccaatgaag ccgagtttaa gacctccgat gtgtttcacg
      481 aaataaggag ggaagatgag gtcgccattc agttcgtcct tcgtgtcgtg aaacatgttg
      541 gcacaaacct ttacgccgtc ataggcaaac atgtccttca tcatcatttc cttgccatac
      601 accacttccc agttgcccgg cagcataatg tcgtagccga tattattcat gagcggtatg
      661 attgcctgtc cctggctgag cgaggccacc ccgcttccct ggaaacaatc gccgccatca
      721 atcaccagcg tattggctgc attctggttg cgcaacgtat ttatcatggt tttgagcgtg
      781 gcaaacccgc ctctcttttt gaaaacaggc ttgccgttct ccatgaaaaa ctcatcgtgt
      841 atcatcaact gcgaatggat atcggctgta tgcagcagtg atatcatgga tgctttgcca
      901 tcctgcaccg ctttgttttt ggccatgctg gcagatttgt aggcagcatc atcatggttg
      961 agggaggcgg cagccaatgg ttgatggatc aatccaccac caatgcccag cgacaaccca
     1021 agtcttccgg cctttcgcaa aaactcacgc ctggagttct ccgaaatttc aatgtgcaat
     1081 ttcttttccg cttctgtgag cagtcgttgt tcttcgcaat gctggcaaga gcattgagac
     1141 aaatgttgta ttggcatgca atcgtttttt tgttgacaac aaagcaggtg ctacttactg
     1201 gctgtttttc ctttcagttc ttcctgcttt cccttcatgg cttttcttgc cgccacaata
     1261 ggcttgtaag ggccatactt gtgttgttgt tctgaaaaac catctgtata aggaccaaac
     1321 ggatgatcga ttggtttctt tgaaatgtcg ggccagtcgt ggctgaggtc cctggaggga
     1381 cgtggctgtg aattcacgaa tgcggccaca tcccaggctt cttcattgct caggttcggc
     1441 gcatcgtgag tggcctgttt gaaaggcatg ttgtccatta cataaccggc aaagcgtgaa
     1501 agcctgaaca agccagcgcc attgttgtag ctgtgcgggc cccacaaagg cggatacacg
     1561 tagcgcccat tttcatccaa ctggccttcg ccattggcgc catggcaact caggcattta
     1621 ttctgaaata cgatttttcc attttccggt gatgcggccc gatcgagata gggcaggtca
     1681 gagatgccgc tgcctgccgg cttttctcct ttcggaacat ccttgcccaa ccatttgata
     1741 taggctacaa tggcctgcat ttcgcggctg ttggtatcaa tggcctgccc attgaggctc
     1801 cgttcaaaac aatcatttac tctcttcgaa atggtttcca ctgatccgct ccggtcacgg
     1861 aatttcggat aggtggatgc aacggcgccg tagttattgc cccatgcttt tctgcctgca
     1921 tcgagatggc agttctggca gttcatccca ttggtgatgg cattgatgct gccgccgggc
     1981 ccaaaatact gatcggtatg cgccaccaat tgtgaaccgt aaaccaccag ttcccgttcg
     2041 g
//
LOCUS       DATIQF010000147         5652 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_215137,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000147 DATIQF010000000
VERSION     DATIQF010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5652
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215137"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..363
                     /locus_tag="VLL95_02340"
     CDS             <1..363
                     /locus_tag="VLL95_02340"
                     /inference="COORDINATES: protein motif:HMM:NF012758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37728.1"
                     /translation="LAMATMDMIKLSGGEPANFLDVGGTANAQTVEAGFRIILKDPKV
                     KAILINIFGGIVRCDRVAQGVIDAYQSIGQINIPIIVRLQGTNAEEAKKLIDESGLKV
                     ESAILLSEAAELVNKAVA"
     gene            465..1178
                     /locus_tag="VLL95_02345"
     CDS             465..1178
                     /locus_tag="VLL95_02345"
                     /inference="COORDINATES: protein motif:HMM:NF017085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAD domain-containing protein"
                     /protein_id="HSR37729.1"
                     /translation="MANAKATWLSREAKKAKVLVDQIKGSSRRKAIHDFRVCIKKIRA
                     VVSNADQPDDFKKHYPALTKIFRKTGRLRDLQIIHSRLATLPSWLHAPVANQLIRAQH
                     KDRKNAILDWLQHTEQAEGVMIELQEIIDFKNHGKKAIRKHAALTQNESEWHEVRKQI
                     KTEMYQQDANARPMAPETKMHRQLDEMQKALGNWHDWEITRKWLETQKPLLPAGEFWL
                     LYQQSSAALHKAADLCRTD"
     gene            complement(1194..4004)
                     /locus_tag="VLL95_02350"
     CDS             complement(1194..4004)
                     /locus_tag="VLL95_02350"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding and (Fe-S)-binding domain-containing
                     protein"
                     /protein_id="HSR37730.1"
                     /translation="MANILQKLQELLPAESIKTSLIDRLSYASDAGFYQLIPQAVVLP
                     ATEQEIAALFRLSHQYHVPLVFRAAGTSLSGQSITDGILVDISRYWRKIKLLDNGAAV
                     LVQPGVTGGIVNHYLKKHGTKIGPDPASIHAAMMGGILSNNASGMCCGVAYNSYHTMK
                     ALRFMMPDGKMYDTRAEKDYDRFVNEQPGLSSTLSALRLQVLQNEALNHRIRHKYKTK
                     NTVGYSLNALIDYEHPLDIFSHLLIGAEGTLAFISEAELHTIPDKPFKAAALLYFPGI
                     FEACDSIVALRDGGAEALELMDRASLRSVEHLPGLPDFFRSLPEGAAALLCEFQANSP
                     ESLEQLVAKASTMLQSLPLLHAAHFTTDETERTFYWKLRKGMFPSVGAVRKRGTTVIL
                     EDVAFPVDKLAYALLDLQQLFVKYEYDSAIIFGHAKDGNIHFVITQLLDTTTEVQRYD
                     AFMREVVDLVLKKYDGALKGEHGTGRNMAPFVEAEWGGDAFNMMQQIKNAADPMGLLN
                     PGVIINGSENAHIENLKDLPQVEEEVDKCIECGFCEVNCPSRDATMTPRRRIVARRAL
                     QRLKKEGKSGEIKQLLKEYAYDGLDTCATDGLCATDCPVDINTGELVKRLRHEQHGAL
                     AKRIAAVMSRHYGVVEKLSRASIGFISWMDNLAGMQLVTKLTRGMHKYVPALPVWLHQ
                     VKGARTLPKTGQQKADYLFFTSCINRVMESNPPQEKSLQQTLLSLSEKAGFKLVIPDN
                     INGSCCGQPFSSKGFFEAGVSLLEKTIDNLLVWTNDGQVPVVCDFSSCTYTFLQNAKR
                     LSPGYHQKFSKLKFVDSVAFIHDAILPRITLRPTGDKVVLHPTCAVTKMKLNQSLLEI
                     AKTASSDVLVPAHAGCCGMAGDRGFLVPELTAAAARQELDEVKELQGASCYASATTCE
                     ISLSNLAGKPYRHIAYLVDALS"
     gene            4075..4566
                     /locus_tag="VLL95_02355"
     CDS             4075..4566
                     /locus_tag="VLL95_02355"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR37731.1"
                     /translation="MQFKDFTIRTITPDDNAALARIIRSTLEEFKANHPGTVYYDEET
                     DQLSRVFEATGSWYFVAEAQGEIVGGAGIFPTNGLPEGTCELVKMYLLPSARGTGLGK
                     CLLHSCFDKARELGYTQMYLETMPELIIAVPMYEKNGFKYLEGPLGNSGHFGCAIQML
                     KKL"
     gene            complement(4569..4868)
                     /locus_tag="VLL95_02360"
     CDS             complement(4569..4868)
                     /locus_tag="VLL95_02360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37732.1"
                     /translation="MVHYNGIFPDDIAHELKRMLGNPAATTAGEDDLQRVLRKYDERK
                     PGHATVEDLPEGVQFKLSDGRVFVRGKQIRKRIRCIEWPSQRIYLFHPLYEVLTA"
     gene            complement(4820..5185)
                     /locus_tag="VLL95_02365"
     CDS             complement(4820..5185)
                     /locus_tag="VLL95_02365"
                     /inference="COORDINATES: protein motif:HMM:NF021759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT-like domain-containing protein"
                     /protein_id="HSR37733.1"
                     /translation="MPKIRAHFEALKAYLPAGSFEPVMDLIERHKVHLTISKERQTKL
                     GDYRHAWHHENHRISVNGNLNVYAFLITLLHELAHLLAFEQFGGRIPAHGKEWKMLYS
                     QLLKWYITMAFFPMTSPMN"
     gene            complement(5228..>5652)
                     /locus_tag="VLL95_02370"
     CDS             complement(5228..>5652)
                     /locus_tag="VLL95_02370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37734.1"
                     /translation="KIEIHNGAHHQHKAVNRGWMPLVGVFAIVTIVVLSSREWLDGKG
                     FDYRVLLGGNALLFLASMLAFLLYSSAMNNKKGYGFVQQVYTGFILKFFVLVVGAIVY
                     FYFASEVNKPGVFACMALYLVYNFLGTSQVVKKKNKKK"
BASE COUNT         1413 a         1482 c         1375 g         1382 t
ORIGIN      
        1 cttgcgatgg caacaatgga catgatcaaa ctcagcggtg gcgaacctgc gaacttcctt
       61 gatgttggtg gaacggcgaa tgctcaaaca gttgaagccg gcttccgcat catcctgaag
      121 gaccctaaag tgaaggctat cctcatcaat attttcggtg gtatcgttcg ctgcgaccgc
      181 gtggcacagg gcgttattga cgcttaccag tccattggcc agatcaatat tcccatcatc
      241 gtgcgcctgc agggcaccaa tgccgaagaa gccaagaaac tgattgacga aagcggactg
      301 aaagtggaaa gcgccatcct gctgagcgaa gcggcagaat tggtgaacaa ggcagttgcc
      361 tgattttttc accgcaacca gcaatgatat ttcaagctaa ggttccatct tcatgatgga
      421 accttttttt gtgttgctgt cttgcggcac cttaatttgg cagtatggca aatgcaaaag
      481 ctacctggct gagcagagaa gcaaaaaaag cgaaggtgct ggtggatcaa atcaaaggat
      541 cctcccgtcg caaggccatt catgacttca gggtttgcat caaaaaaatt cgggcagtgg
      601 tcagcaatgc cgaccagcct gatgatttta aaaaacatta tcctgccctc accaaaattt
      661 tcaggaaaac aggcaggctt cgcgatctgc aaatcattca cagccgcctg gccacactcc
      721 cctcctggct tcatgcacct gtggccaacc aactgatcag ggctcaacac aaagatcgaa
      781 agaatgcgat tcttgactgg ttgcagcata cagaacaggc ggagggagtg atgattgaac
      841 tgcaggaaat cattgacttt aaaaatcacg gcaagaaagc catacgaaag catgcggcac
      901 ttacccaaaa cgaatccgaa tggcatgagg taagaaagca aatcaaaacg gagatgtacc
      961 aacaggatgc gaatgccagg cccatggctc cggaaacgaa aatgcacagg cagcttgacg
     1021 aaatgcaaaa agcgctgggc aattggcacg actgggagat caccaggaaa tggctggaaa
     1081 cgcaaaagcc attgttgccg gctggcgaat tttggctgct ttaccaacaa tcatccgccg
     1141 ccctgcacaa agccgcagac ctctgcagaa cagactgaag atcgccgcaa catttaagac
     1201 agggcatcca cgaggtaggc gatatgcctg tatggcttac ctgcaagatt tgaaagcgaa
     1261 atttcgcagg tggtggccga tgcatagcac gatgcaccct gcaattcctt cacctcatcc
     1321 aattcctggc gggccgcagc tgctgtgagt tcgggcacca ggaatccgcg atcacctgcc
     1381 attccacaac aaccggcgtg tgccggcacc agtacatcgc tgctggccgt tttggctatt
     1441 tccaacaacg actggttcag tttcattttg gtaacggcac aggtaggatg cagtaccacc
     1501 ttgtcaccag ttgggcgaag cgtaatgcgt ggcagtatgg cgtcatgaat gaaggcgaca
     1561 ctgtcaacaa acttcagttt ggaaaacttt tgatgatagc ccggtgataa ccgctttgca
     1621 ttttgaagga aagtataggt gcaggatgaa aagtcacaca ccaccggcac ttgtccatcg
     1681 tttgtccaaa ccagcaggtt atcaattgtc ttctccagca gtgaaacccc ggcctcgaaa
     1741 aatcctttgc tcgaaaaagg ctgaccacag caggacccgt tgatgttgtc gggaataacc
     1801 agtttgaacc ccgctttttc cgacagactg agcaaggttt gctgcaatga tttttcctgt
     1861 ggcgggttgc tttccattac ccggttgata caactggtga aaaacaaata gtctgccttt
     1921 tgctggcccg ttttgggaag tgttctcgct ccttttacct ggtgcagcca caccggcaag
     1981 gcaggaacat acttatgcat gcctcttgtc agcttcgtaa ccagttgcat gcctgcgagg
     2041 ttgtccatcc acgaaataaa cccaatgctt gcccgagaca acttttcgac gacgccgtaa
     2101 tgacggctca taactgctgc tattcttttg gcaagggctc cgtgttgttc atgtcgcagt
     2161 cgcttcacca gttcaccagt gttgatgtcc accgggcaat cggtggcgca caatccatcg
     2221 gtggcgcagg tgtccagtcc atcatacgca tactctttca gcaactgctt tatttctccc
     2281 gatttcccct ccttcttcaa ccgctgtaat gccctcctgg ccactattcg acggcgtggt
     2341 gtcatggtag catcccggct ggggcaattc acttcgcaaa aaccgcattc aatgcattta
     2401 tccacttcct cctctacctg gggcaggtct ttcaaatttt cgatatgggc attctcgctg
     2461 ccgttgatga tgacgccggg attgagcaat cccatgggat cagccgcatt ttttatctgc
     2521 tgcatcatgt tgaatgcatc tccaccccat tcagcctcta cgaacggagc catattgcgg
     2581 ccggtgccgt gttctccctt caatgcccca tcgtattttt tcaataccag gtccaccact
     2641 tcacgcatga acgcatcgta gcgttggacc tcagtggtgg tgtcgagcag ttgggtgatc
     2701 acaaaatgga tgtttccgtc tttggcatgt ccaaaaatga tggcgctgtc gtattcgtat
     2761 tttacaaata actgttgcag atcgagcaag gcataggcca gtttgtcaac cgggaaagcc
     2821 acatcttcca ggataacggt ggtgccccgc tttctcactg ctcccacact tgggaacatg
     2881 cctttgcgca gtttccaata aaaagttcgt tcagtttcat cagtggtaaa atgggctgca
     2941 tgcagcaacg gcaatgactg caacatggtg ctggcttttg ccaccaactg ctccagcgat
     3001 tcggggctgt tggcctggaa ctcgcacagc aaggctgcgg ccccttcggg caaacttctg
     3061 aaaaaatcgg gcagccccgg caagtgctcc accgagcgaa gagaggccct gtccatcaat
     3121 tccaaagctt ccgcaccgcc atccctcaat gcaactattg aatcacaggc ttcgaatatg
     3181 ccggggaaat acaacagggc agccgccttg aaaggcttgt caggtatggt gtgcagttcc
     3241 gcctccgata tgaatgccag tgtgccttcg gccccaatga gcaggtgcga aaaaatatct
     3301 agcggatgct catagtcgat caacgcattg agtgagtagc ctaccgtgtt ttttgttttg
     3361 tacttgtgac ggatgcgatg gttcaacgcc tcattttgca acacctgcaa tcgcagtgct
     3421 gacagtgtac tggaaagacc aggttgttca tttacaaacc ggtcatagtc tttttccgcc
     3481 ctggtatcat acattttccc gtcgggcatc atgaagcgaa gcgctttcat ggtatggtag
     3541 ctgttgtacg ctaccccgca acacatacct gaggcattgt tgctaaggat accccccatc
     3601 atggctgcat gtatgctggc ggggtcgggg ccaattttgg tgccgtgttt tttgagatag
     3661 tgattgacga tgcccccggt aacacccggc tgcaccagca ccgcggcgcc attgtccaac
     3721 agctttattt ttcgccagta ccggctgatg tctaccaaaa tgccatcggt gatgctttgc
     3781 ccgctcaaac tggtaccggc cgccctgaac accagcggaa catggtattg atgactcaaa
     3841 cgaaaaagcg cagcgatctc ctgctcagtg gcaggcaaaa ccactgcctg cggaatgagt
     3901 tggtaaaagc cggcatctga agcataggat aaccgatcaa taagacttgt tttgatactc
     3961 tcggcaggca ggagttcctg caacttttgt aggatgttgg ccatgatatg aaggaggttc
     4021 gaatgtaagt cgcctcttct gtttgcaaca tgacatcccc cctatttttg tgccatgcag
     4081 ttcaaagatt ttaccatacg aaccattacg cctgatgata atgccgccct ggccagaatc
     4141 atacgcagca cgctggaaga attcaaagcc aatcatccgg gcaccgtata ctacgacgag
     4201 gaaactgatc aactgagccg ggtttttgag gctaccggtt cctggtattt tgtggccgag
     4261 gcccaaggcg aaatagtagg tggcgcaggc attttcccta ccaatggtct tcccgaaggc
     4321 acctgcgaac tggtaaaaat gtacctgctt ccgtcagcaa gaggtaccgg gctcggcaag
     4381 tgcctgctgc actcctgctt tgacaaagca agggaattgg gctacacaca aatgtatctt
     4441 gagaccatgc ccgaactcat cattgccgtg cccatgtatg aaaagaatgg gttcaaatac
     4501 ctggaggggc cgttgggaaa cagcggtcat tttggctgcg ccatacaaat gttgaaaaag
     4561 ttgtaggatc aggcggtgag cacttcgtac aaggggtgga acaaatatat gcgctgactg
     4621 ggccattcga tacagcgaat gcgcttcctg atttgcttgc cgcgtacaaa cacccttcca
     4681 tcactcaatt tgaactgcac gccttccggc aggtcttcca ccgtggcatg gccgggtttg
     4741 cgttcgtcgt atttcctgag tacccgctgc aagtcatcct cgccggcggt agtggcagca
     4801 ggattgccca gcatccgttt caattcatgg gcgatgtcat cgggaaaaat gccattgtaa
     4861 tgtaccattt cagcagttgg ctgtaaagca ttttccactc tttgccatgc gctggtatgc
     4921 ggccgccaaa ttgttcgaat gccaataaat gagccagttc gtgcagcagc gtaatgagaa
     4981 aggcgtacac attcaaattg ccgttcactg aaatacggtg gttctcatga tgccaggcat
     5041 gccggtaatc gcccagtttg gtctgcctct ccttgctgat ggtaagatga accttatgcc
     5101 gttcaatcaa gtccatcacc ggctcaaaac tgccggctgg caagtaggct ttcaatgctt
     5161 cgaaatgagc acggatcttt ggcatgtttc aaaataaatc gctctccaag atctaccgga
     5221 gacttgttca ctttttcttg ttcttcttct tcactacctg cgacgttccc aggaaattgt
     5281 acaccaggta caacgccatg caggcaaaca caccgggctt gttcacttcg ctggcaaaat
     5341 agaaatacac aatggcgccc accaccagca caaagaactt caggataaac ccggtataaa
     5401 cctgctgcac aaaaccatag ccttttttgt tattcatggc agacgagtat agcaggaacg
     5461 ccagcatgga tgccaagaat aaaagggcat tgccaccgag cagtaccctg taatcaaagc
     5521 ctttgccatc cagccattcg cggctgctca aaaccacaat cgtcactatg gcgaatacgc
     5581 ctaccaaagg catccatccc ctgtttactg ctttgtgttg gtggtgggcg ccattgtgta
     5641 tttctatttt gc
//
LOCUS       DATIQF010000148         2735 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_48036, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000148 DATIQF010000000
VERSION     DATIQF010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2735
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48036"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1510)
                     /locus_tag="VLL95_02375"
     CDS             complement(<1..1510)
                     /locus_tag="VLL95_02375"
                     /inference="COORDINATES: protein motif:HMM:NF012618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HSR37735.1"
                     /translation="MTRSLLSFFMYLLVAMAPAQTPQLVLPVGHTLGVYCTDFSADGK
                     RIVTGGRDNTALVWDAASGKLLRVLRGHSQLIASVQFSPDGQRVLTASYDNLAAVWDV
                     GTGKYIGVLQPKRSPFPADVLYEANYNADGSLILTRGSTYGIMLWDANTYKLLYKVPQ
                     ESPYDQQAVFSNDGKQLLVTDGPHILVLDARTGQLLRKLAGGQSSITALSPGAGPSLL
                     LALSEKEGATVWNLADGSKKSTLAETQNVSSAFLSPDGRYALFLAAGPQSISAGKYSV
                     WDVQSNKKLYDGAEKTNYLRCHQFSADGKYFVTSPNTSTAKIWETKSGKLINQFIGDS
                     VYGLVDCARFSPNGKQLLTGGFDRAAHLWDVSAGYQISKLSGHTLYTNTLRFSKDGKY
                     YVTASDDGSARIIEAATGAAVLALKGHKGEILYSEFSPDGQKVLTVSRDATARIWDSR
                     GNLLQVLHGHTALIFRGEFSPDGTRVITASNDSTAKVWDAGSGKLLLDLRGHK"
     gene            complement(1653..>2735)
                     /locus_tag="VLL95_02380"
     CDS             complement(1653..>2735)
                     /locus_tag="VLL95_02380"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HSR37736.1"
                     /translation="CLLDYFPKDFLCIIDESHQTIPQVAGIYGGDRSRKMVLVDYGFR
                     LPSALDNRPLNFHEFEYMVNQVVYVSATPGDYELEQTGGVVVEQVVRPTGLLDPPIEV
                     RPSINQIDDLLDEIDKRVSKGDRVLVTTLTKRMAEEMDKYLHRINIRSKYIHSEVDTL
                     ERVEILRQLRLGDIDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNEKSLTQTAGR
                     AARNVEGLVIFYADTITESMQKTMDETLRRREKQIAYNIEHGITPTTVKKSIEDVMKQ
                     TSVLDIKGFDETKPTAIPYEADILPGNIAADDGEVYKTIPQMEKEVAKVKKQMEKAAR
                     DMDFIEAARLRDEMFRLQKELEDMKA"
BASE COUNT          571 a          750 c          728 g          686 t
ORIGIN      
        1 ttttgtggcc gcgcaaatcc agcaacaatt tgccgctgcc ggcgtcccac actttggcag
       61 tggagtcatt gctggcggtg atcacccggg tgccgtcggg agaaaattcg ccacgaaaga
      121 tgagcgccgt gtgtccgtgc agcacctgca acaggttgcc acggctgtcc caaatacggg
      181 cagtggcatc ccttgaaacg gtgagcacct tttggccgtc ggggctgaat tcgctgtaga
      241 ggatctcgcc cttgtgtcct ttcaacgcca ggacggcagc gccggtagcc gcttcaatga
      301 tacgggccga gccatcgtcg gaagcggtta cataatactt gccatccttg ctgaagcgaa
      361 gcgtattggt gtacagggtg tggccgctca gtttgctgat ttggtatccg gcgcttacat
      421 cccacaaatg ggctgcccta tcgaaaccac ccgtcagcaa ttgcttgcca ttcgggctga
      481 agcgggcaca atccaccagg ccatacaccg aatcgcctat aaactggttg atcagtttgc
      541 cgcttttcgt ttcccatatt ttggcagtgc tggtgttggg agaagtgacg aaatattttc
      601 catcagcaga aaattgatgg cagcgcaggt agttggtttt ttctgcgcca tcgtatagtt
      661 ttttattgga ctgtacatcc cacaccgaat acttgccggc acttattgat tgggggccgg
      721 cggctaagaa caaagcatac cggccatcag gcgaaagaaa ggcgctggaa acattttgcg
      781 tttcagccag tgtggatttt ttgctgccat ccgccaggtt ccaaacagta gcgccttcct
      841 tttcagaaag ggccagcaac agcgatggcc cggccccagg cgacaaggct gtgatggacg
      901 attgcccgcc tgccagtttg cgcaacagtt gtcctgtgcg ggcatccagt accagtatat
      961 ggggcccgtc ggtcaccagc agttgtttgc catcgttgct gaaaacggct tgttgatcgt
     1021 agggcgattc ctgcggtact ttgtacagca atttgtaagt gttggcatcc cacagcatga
     1081 tgccataggt tgatcccctt gtcaaaatca ggctgccatc ggcattgtag ttggcttcat
     1141 acaatacatc ggccggaaag ggggatcgtt tgggttgcag cacgccgatg tatttgccgg
     1201 tgccgacgtc ccacactgcc gcgaggttgt cgtacgaagc tgtgagcacc cgctgcccat
     1261 cgggactgaa ctgcacactg gcaatgagtt gcgaatggcc acgcaataca cgaagcagtt
     1321 tgccactcgc cgcatcccac accagggcag tgttgtcgcg acccccggtt actatccttt
     1381 tgccatcggc tgaaaaatcg gtgcagtaca cgcccagggt atggcccacc ggcagcacca
     1441 gttggggcgt ttgtgcgggg gccattgcca ccagcaggta cataaagaat gaaagtaggg
     1501 accgggtcat tggcgaatca agctactgaa agtaatgctc cagtatgatg aagtaatacc
     1561 cacaccatgg tattaatgca ggtgtcagcc aggtgaatga accgtgccat tcacataatc
     1621 cgtgctattc gcatcattcg tgtggttcct ggctacgcct tcatatcctc cagctccttc
     1681 tgcaaccgga acatctcatc ccgcaacctg gccgcttcaa taaagtccat atcccgcgcc
     1741 gctttttcca tttgcttctt cactttggcc acttcttttt ccatttgcgg gatggtcttg
     1801 tacacttcac catcatcggc ggctatattg ccgggtagga tatcggcctc gtaaggaatg
     1861 gccgtgggtt tggtttcgtc aaagcctttg atgtcgagca cgctggtttg cttcatcaca
     1921 tcttcaatgc tcttcttcac ggtagtgggc gtaatgccgt gttcaatgtt gtaggcaatt
     1981 tgtttttcgc ggcgacgcag ggtttcatcc attgttttct gcatgctctc cgtgatggta
     2041 tcggcataaa aaatgacaag gccttccacg ttacgggcgg cacggcctgc tgtttgcgtc
     2101 aatgattttt cgttgcgcaa aaagccttcc ttgtcggcat cgagtatggc cacgagtgat
     2161 acttcaggca ggtccagtcc ttcccgcagc aggttcacgc ctaccagcac atcaatgtcg
     2221 ccgaggcgca gctgccgcag gatctctacc cgctccagcg tatccacttc gctgtggatg
     2281 tatttgctgc ggatgttgat gcggtgtaaa tacttgtcca tctcttcggc catgcgtttg
     2341 gtgagggtcg ttaccagtac ccggtcgccc ttgctcaccc gcttgtctat ttcgtccagc
     2401 aggtcgtcaa tctggttgat gctgggccgt acttcaatcg gcggatcaag caggcccgta
     2461 ggacgcacca cctgctccac caccacgcca ccggtttgtt ccagttcgta gtcaccgggc
     2521 gtggcactta cgtaaaccac ctggttcacc atgtattcaa actcatgaaa attcaggggc
     2581 cggttgtcga gggctgaggg cagccggaaa ccataatcca ccagcaccat cttgcggctg
     2641 cggtcgccgc cataaatgcc cgctacctgc ggaatggtct ggtggctctc atcgatgatg
     2701 cagagaaaat ctttggggaa ataatcaagc aaaca
//
LOCUS       DATIQF010000149         7534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_169490,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000149 DATIQF010000000
VERSION     DATIQF010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7534
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169490"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            202..1653
                     /locus_tag="VLL95_02385"
     CDS             202..1653
                     /locus_tag="VLL95_02385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37737.1"
                     /translation="MKDFPIDMHIAYLFSLFFISVCNMEIYRLLSNGILLSSFQYARP
                     ELFQESDLIWGLGSAFILMGIAVPVKKRPKMVVYWELPVSKFTLFFVLGLAMTFKDVW
                     LPIQLPGTFDNILSILPLAATFFLTFNGVMHDNTRWQMYGFIICMVFLIKAALYYYLR
                     LDIILPALVFILAQLPGTFDNILSILPLAATFFLTFNGVMHDNTRWQMYGFIICMVFL
                     IKAALYSYLRLDIILPALVFILAQFLGTRSLKFMVNKFMLPIYGVLILFFIFFEAFGG
                     LRSNAAVGINRFSDLQQGREQMKTMFRDEEEQLNPFQRSSVVNQISACAGLVEDKGLY
                     MGKASAPLAAALIPRALWPDKPKIALGAWFAVEIGAGVQTETWFNNSINMTIPGQLYL
                     DFGWGGLAIGCMLVGMLLNWLWQHSGFYVSSFNLFGVFFGVFMLYNIVFGLGADLQMF
                     VTMIAMYLIFLVLSKLIPRFNEFIMRRSAVEGQ"
     gene            1613..2656
                     /locus_tag="VLL95_02390"
     CDS             1613..2656
                     /locus_tag="VLL95_02390"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024914.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR37738.1"
                     /translation="MNLLCVGPLWRGSNAGGLFKALSRQGARIEVVDEFYYLSLRGFS
                     KFSKALYKLIRPYQINDFNDEICRQIKNFKPNILLVYKGAFVQPRTLELAKANGVRLV
                     NFYPDVSMFSHGKLLPQTMHYYELVFTNKTFGIKDLHDAFGVSNAIFVPHGFDPDIHR
                     PLQLTAQEWEMYGCDASFIGTWSPKKEMLFSHLKSQLPQLNLHVWGSQWENSHSSVLK
                     SCIKGREILGDLFAVAIQASKINLGILSERVQGASSGDLITSRTFHIPGAGGFLLHER
                     NEESVLYFDENEEAGFFENEHELVDRVSYFLNNEEDRLRIAQNGHQRALRDHSLDRRA
                     QVVMNAMLHQFRQ"
     gene            complement(2791..2928)
                     /locus_tag="VLL95_02395"
     CDS             complement(2791..2928)
                     /locus_tag="VLL95_02395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37739.1"
                     /translation="MVQISLHLANRPDIAPTGTLWVNLVNHEFNLIMQLTLHAVENLF
                     N"
     gene            2950..4818
                     /locus_tag="VLL95_02400"
     CDS             2950..4818
                     /locus_tag="VLL95_02400"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR37740.1"
                     /translation="MALGLPGSRTILTVHDIGYYEQVLKGIRKWIYGLFWWWLPLRRV
                     DKITTVSTFTLNRLRQVFRVPESKMQVLYNPLFEGFSPTGRKFDSACPRIMQIGSGYN
                     KNLERLILAVKGIPCHLVLVNRLSEEQHQQLQLAGISYEHHPRLSQKEVQDMYRSVDI
                     LFFASVYEGFGLPIIEAFASGVPVITSTVTSMPEIAKDAAMLVNPYDVDAIRASLLAI
                     IGDENLRNDLVNKGFSRARDFVPREIAAQYLKIYRSYNHLDWYLPHSTHYHSYFFNKL
                     ADDKRVQLDVYYFSETISKYPWKKQEERKFQFQSLNPGLLNIDWKLVVKNGFKKYCRA
                     VVAGWSNPTTICLLTLWSLRGASFWLYTDTPRQTVRRGVKQWWRRVWLNWIIKRAKGM
                     LVTGEYGREFVLGWQLNNHVYNFPFVVDLDFFHPSPGLNGPDQKVVKMFSSGRLDIDH
                     KGYDIALQALAQIKKQNPAFRFQWKIAGVGPDKEQILSIARQHQLVDDLELLGWKEMD
                     ELPGLLHESDIFLHPSRFDPFPNAILEAMAAGCVVVASDAAGTAYDRIENGSNGFLFR
                     SESVDELASQIWRACQLSAEENKSLRLEARKTAEKWPYQYNLNTLVGIIDSDVMQS"
     gene            4840..5973
                     /locus_tag="VLL95_02405"
     CDS             4840..5973
                     /locus_tag="VLL95_02405"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HSR37741.1"
                     /translation="MELIIDASNIKAGGGLTHLQEIMNTDAAQQAGFNRVFLWAPDAT
                     LASIADRPWLEKCHHPLLNAGYRQVWQWKRGVFEPFARSRNALVYIPGTGGSKSRYVT
                     MCQNLLPLQTKELNRYFFSKDWIRLRLLRSLHKNAYSHAAGVVFLNRYCREYASKLVG
                     RDLADSAIIPHGLSSRFLVNDKLIYTGSFTEERPFRLVYVSIIDVYKHQWVVAEAVYQ
                     LVSEGFNIQLDLIGPAYPKALNRLNRVMQKYASVKNAVHYRGPMPYQTVNAAYAEGDA
                     FVFASSCETFGMVLTEAMAAGLPVMCSSMSSMPETAGDAALYFDPLSVTDTKAAIVKL
                     YEQPMLREALSKKSLAKARSMSWDHCARQTFSFLAQVSQSCAE"
     gene            5961..>7534
                     /gene="asnB"
                     /locus_tag="VLL95_02410"
     CDS             5961..>7534
                     /gene="asnB"
                     /locus_tag="VLL95_02410"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HSR37742.1"
                     /translation="MCGIVGSFGSELSLNALPLQSISHRGPDDQGSYQYNKVLLGHTR
                     LSILDLSANGHQPMTSADDQLVIVYNGEIYNHLDIRKELGETGYKSTSDTETLLFAYR
                     KWGMGMLQKLNGIFAFALLDKSKQKLFVVRDHFGVKPLYYFRKNNTLLFGSELKALLA
                     FPEFDRTVDYTALVNYLNFLWSPGEKTPFQFVRKLLPGHYMEIDLQQETIADPVKYYE
                     VPFNGQYTYKKEDEALAALDAHLTSAVHRQMLSDMPLGFFLSGGLDSSAIVALAAKQQ
                     AADSLTCYTTDVKDNDFEGYANDLPYAKKVAAHLGVRLNVIPSRSDIVRDFDSMIYHL
                     DEPQADPAPFHVLNICKAARQDGIKVMLGGAAGDDIFSGYRSHQALYYERYFKLIPPF
                     AGKGIKEMVSWLGTSNPMARRLRKLTANFDKTTVERMYGYAEWLPLATNKGLFALDKR
                     QQVDAYHPADYYFQLLQQIPQEKNLLNQKLFWEMKGFLPDHNLNYTDKMSMAVGVEAR
                     VPFLDTELVAFSTQLHP"
BASE COUNT         1900 a         1645 c         1837 g         2152 t
ORIGIN      
        1 gttgtattac aaagcctgaa aatactgaag gcaagaacta agcggtttct ggggcaatcg
       61 tgatgaatta tcggttttat gcggatttct ttcaacttta tattcttcgg cctgattgca
      121 tcctttctcg gatcatttta cttatccggc tgggtgtgga ttatctactc actcatcctg
      181 ttgttgcgat caatatggtc agtgaaagat tttcctattg acatgcacat tgcttacctg
      241 ttctccttgt ttttcatatc tgtttgcaac atggagattt acaggttgtt gagcaacgga
      301 atacttcttt cctctttcca atatgcacgt ccggaacttt tccaggaatc cgatttgatt
      361 tggggtttgg gttctgcatt tattctaatg ggcatagcag tgcctgtgaa gaaaaggccc
      421 aagatggtgg tgtattggga acttcccgtc agcaagttca ccttgttttt tgttttagga
      481 ttagcgatga ccttcaaaga cgtatggctt ccgatccaat tgcccggtac cttcgacaac
      541 attctttcca tccttccatt ggcggctacc ttcttcctga ccttcaacgg agtgatgcat
      601 gataataccc ggtggcagat gtatgggttt atcatttgca tggtgtttct cataaaggct
      661 gccttgtatt attacctccg tcttgatatt attctgcctg cattggtatt cattttggca
      721 caattgcccg gcaccttcga caacattctc tccatccttc cattggcggc tacgttcttc
      781 ctgaccttca atggagtgat gcatgataat accaggtggc agatgtatgg ttttatcatt
      841 tgcatggttt ttctcattaa agccgccttg tattcttacc tccgtcttga tattattctg
      901 cctgcattgg tattcatatt ggcacaattc ctcggcaccc gttcactcaa gtttatggtc
      961 aacaaattca tgttgcctat ctacggggtg ctcatattgt tttttatatt ctttgaagcc
     1021 tttggtggat tgcgttccaa tgccgctgtg ggtatcaaca ggttttctga tttgcagcaa
     1081 ggccgggaac aaatgaaaac aatgttccgt gatgaagaag aacagcttaa cccgtttcag
     1141 cgttcctctg tagtcaacca gatatcggcc tgcgccggat tggtggaaga caagggcctt
     1201 tatatgggca aagccagtgc cccattggct gcagccttga ttccacgggc attgtggccc
     1261 gacaagccaa agattgcttt gggcgcctgg tttgccgttg aaattggagc aggggttcaa
     1321 actgaaacat ggttcaataa ctctattaac atgacgattc ccggccagtt atacctcgat
     1381 ttcggttggg gtggtttggc catcggatgc atgttggttg gaatgctgct caattggctt
     1441 tggcaacaca gcggttttta tgtttcctca ttcaatttgt ttggggtttt cttcggtgta
     1501 ttcatgttgt acaacattgt attcggactt ggtgccgact tacagatgtt cgttaccatg
     1561 atcgcgatgt atctcatttt tttggtgctt tcaaaactga tacccaggtt caatgaattt
     1621 attatgcgtc ggtccgctgt ggaggggcag taatgctggc ggcctgttta aggcgctttc
     1681 caggcaaggt gcccggattg aggtggtaga tgagttttac tacctgtcgc tgaggggatt
     1741 ttcaaaattc tccaaagcct tgtacaaact gatcaggcct taccagatca atgatttcaa
     1801 tgacgaaatc tgcaggcaga taaagaattt caaacccaac atattgctgg tatacaaagg
     1861 agcttttgta caacctcgaa cactcgaact tgccaaagca aacggggtgc gactggttaa
     1921 tttttacccc gatgtgagca tgttcagtca tggcaaattg ctgccgcaaa ccatgcatta
     1981 ttatgagttg gtgtttacca acaagacttt tggtataaag gaccttcatg atgctttcgg
     2041 cgtgagcaac gccatttttg tgccgcatgg atttgatcct gacatacatc gtccgctgca
     2101 gttgaccgca caggaatggg agatgtacgg ctgcgatgca agttttatag gcacctggtc
     2161 gcccaaaaaa gaaatgctct tttcgcattt gaaatcgcaa ttgccccaac tgaacctaca
     2221 tgtttgggga agtcagtggg agaattcgca cagttccgtg ttgaaatcct gcatcaaagg
     2281 cagggagatc ctgggcgatt tatttgcagt ggccatccag gccagcaaaa taaaccttgg
     2341 cattctcagc gaacgagtgc agggtgcttc atcaggcgac ctcatcactt ccagaacctt
     2401 tcatatcccg ggagcgggtg ggttcttgct gcatgaaaga aatgaggaat cagtgttata
     2461 cttcgatgaa aatgaagagg caggattctt tgaaaacgaa cacgaactcg tagaccgggt
     2521 atcttatttc ttaaataatg aagaagatcg tcttcgcatt gctcagaatg gccaccaacg
     2581 ggcattgcgg gatcattcac tggacaggcg tgcacaagtg gtaatgaacg caatgcttca
     2641 tcaattcagg cagtagaaaa ttggccgcct ctctacggct gagcattatg tacaacgccg
     2701 ctgcaagagg ggggaacact aaaagcaaga gcgggtaata ttcacatgaa agtttgtttg
     2761 atatacaggg aaagccggcc gggagggttt tcaattgaag agattttcaa ctgcatgcag
     2821 cgtgagttgc atgatcaggt tgaattcgtg gtttaccagg ttgacccaaa gcgttcccgt
     2881 tggagcaata tcaggtcggt tggcaaggtg aaggctgatc tgtaccacat aaccggcgac
     2941 tgtaattaca tggcgttagg tcttcccgga agcagaacga ttcttaccgt gcacgacatt
     3001 gggtactacg aacaagtgct gaaagggatt cgcaaatgga tatatggtct gttctggtgg
     3061 tggctgcctt tgcggagggt tgataaaata actactgttt caaccttcac cctgaatcga
     3121 ctccggcaag tgttcagagt gcctgagagt aaaatgcagg tgctttacaa tcctttgttt
     3181 gaagggttct cgccaaccgg cagaaaattc gattccgctt gtccacgaat catgcaaatt
     3241 ggttctgggt ataacaagaa cctcgaaaga cttatcctgg cagtgaaggg aattccttgt
     3301 caccttgtac tggtcaatag attaagtgaa gaacaacatc agcagttgca attggcaggc
     3361 atttcgtatg agcatcatcc ccgcctgtcg caaaaggagg tacaggatat gtaccgctcc
     3421 gttgatatac tcttttttgc ttctgtttac gaaggttttg gattgcccat cattgaagcc
     3481 tttgcatcag gagtgccggt gatcacatct accgttactt ctatgccaga aatcgcgaag
     3541 gatgctgcca tgttggtgaa tccatatgat gttgacgcca tcagggccag tctgcttgcc
     3601 atcattggcg atgaaaatct tcggaatgac ctggtcaaca aaggattcag cagggcgaga
     3661 gattttgtgc cccgtgaaat tgccgcacaa tacctcaaaa tctacaggtc ctataatcac
     3721 cttgattggt atttgccgca ttccacacac tatcattctt acttcttcaa taagcttgct
     3781 gatgacaagc gggttcaact ggatgtatat tatttcagtg aaaccatttc aaagtacccc
     3841 tggaaaaagc aggaggagcg taagtttcaa ttccagtctc ttaatcctgg gttactgaat
     3901 attgactgga aactggtagt gaaaaatgga ttcaaaaagt attgcagggc agttgtggcc
     3961 ggctggtcca atcctactac catttgcctt ttgacgctct ggagtctcag gggagcttct
     4021 ttttggctgt atacagacac tccaaggcaa actgttcgca gaggcgtaaa gcaatggtgg
     4081 cgaagggttt ggctcaattg gattatcaaa agagccaaag gcatgctggt aacgggtgag
     4141 tatggcagag aatttgtatt gggctggcaa ttgaataatc atgtttacaa ttttccattc
     4201 gtagtcgacc ttgatttctt tcatccatca cctggtttga atggccccga tcagaaggtc
     4261 gtgaagatgt tttcgagtgg ccgactggac atagatcaca aaggctacga cattgctttg
     4321 caggcgttgg cacaaatcaa aaaacagaat cctgcattca ggtttcaatg gaaaattgca
     4381 ggtgtggggc ccgataagga acaaattttg tctatcgccc gtcagcatca gctggtagat
     4441 gatctcgaat tactgggttg gaaagaaatg gatgaattgc cggggctgtt gcatgaatca
     4501 gatatttttc tgcatccatc caggttcgat ccctttccca atgcaatact tgaagccatg
     4561 gcggcaggtt gcgttgtggt agcatccgat gcggcaggta ctgcgtatga caggatcgag
     4621 aatggcagca atggatttct ttttcgctca gaatcagtcg atgaacttgc ctcccaaata
     4681 tggcgagctt gccagttgtc agctgaggaa aacaaatcac tacgactgga agccaggaag
     4741 actgctgaaa aatggcctta tcaatacaac ttgaatacac ttgtcggaat catcgacagt
     4801 gatgtgatgc aatcttgagt agtagaaaac tctcttcttt tggaacttat cattgatgca
     4861 tcgaatatca aagccggagg gggccttacc cacctgcagg agatcatgaa taccgatgcg
     4921 gcccagcagg ccgggttcaa cagggttttt ttgtgggcac cggatgcaac cctggccagc
     4981 attgctgata ggccatggct ggaaaagtgt catcatcctt tgctcaatgc gggctacagg
     5041 caggtgtggc agtggaagcg gggggtgttt gaaccatttg cacgaagccg taacgctttg
     5101 gtgtatatac ccggtaccgg cggatccaaa agcaggtatg tcaccatgtg tcaaaacctg
     5161 ctgccgttgc aaaccaaaga actgaacagg tatttttttt caaaggattg gattcgtttg
     5221 cgcttgctga gatcgcttca taaaaatgcc tacagtcatg cagcgggtgt cgtatttctc
     5281 aaccgttatt gccgggaata tgcctcaaaa ctggtgggtc gtgatttggc tgatagcgcc
     5341 atcattccac atggtctttc ttcccgcttc ctggtaaatg acaagctgat atataccggt
     5401 tcctttacgg aggaacgtcc cttcaggctg gtttatgtat ctatcattga tgtgtacaaa
     5461 caccaatggg tagtagctga agcagtgtat caattggtat ctgaaggatt caacattcag
     5521 cttgatttga ttgggcctgc ttaccccaaa gcattgaaca ggttgaaccg agtcatgcag
     5581 aaatatgcat cagtgaaaaa tgcggtacac tatcgtggcc ccatgccata ccaaactgtg
     5641 aatgccgctt atgcggaagg cgatgctttc gtattcgcct ccagttgcga aacctttggc
     5701 atggtgctta cagaagccat ggcagcaggt ttgccggtca tgtgttcttc tatgagctca
     5761 atgcccgaaa cagcaggcga tgcggctttg tattttgatc cgctgagtgt aacggatacc
     5821 aaagctgcta tagtgaagct ttatgagcag ccaatgctgc gtgaagcatt aagtaaaaaa
     5881 tcgttggcca aagcccgctc tatgagttgg gaccattgtg cccgtcaaac attttcattt
     5941 ctagcccaag taagtcaatc atgtgcggaa tagttggcag ttttggttct gaactttcgc
     6001 tgaatgccct gcctttgcaa agcattagcc atcgaggtcc cgatgaccag ggaagctatc
     6061 aatacaacaa agtattgctt gggcataccc gtctttccat cctcgatctt tcggccaatg
     6121 gccaccaacc catgacttcc gctgatgatc agttggtaat agtttacaac ggagagattt
     6181 ataatcacct cgatatcagg aaagagttgg gtgaaaccgg ttataaatcc acctcggata
     6241 cagaaacgct gttgtttgcc tatcgcaaat ggggcatggg tatgctccaa aagctcaatg
     6301 gaatatttgc ctttgccttg ctcgataaat caaagcagaa gctgtttgtt gttcgcgatc
     6361 attttggagt gaagccactg tattatttcc gcaagaacaa tactttgttg tttggaagtg
     6421 agctgaaggc cttgcttgca tttcctgaat tcgacagaac cgttgattat actgcacttg
     6481 tcaattacct caatttcctc tggtcgcccg gtgagaagac gcctttccag tttgtaagaa
     6541 aattactgcc tggccactac atggagatcg atttgcagca ggagaccatt gcggatccgg
     6601 taaagtatta tgaagtgcca ttcaatggcc agtatactta caagaaggaa gatgaagcct
     6661 tggctgcttt ggatgctcat ctcaccagtg ccgtgcatcg gcagatgttg tcggatatgc
     6721 cgctgggctt ctttctgtcc ggcggacttg attcttcagc catagtggcg ctggcggcca
     6781 agcagcaggc agccgattca cttacctgtt acactaccga tgtaaaggac aatgattttg
     6841 aaggatatgc caatgacttg ccctatgcca aaaaagttgc cgcccacctg ggtgtcaggc
     6901 tcaatgtcat tccttcaagg tctgatatcg tcagggattt tgatagtatg atctatcacc
     6961 ttgatgagcc gcaggcagat cctgcgcctt ttcatgtgct gaatatttgc aaggcggcca
     7021 ggcaggatgg tatcaaggtg atgctgggcg gagctgcagg cgatgatatt ttttctggtt
     7081 acagaagtca ccaggcactt tactatgaac gttatttcaa gctgatccct ccctttgctg
     7141 gcaaaggcat taaagagatg gtgagttggt tgggaacatc aaatcccatg gctcgcaggc
     7201 tgcgcaaact cacagccaat tttgataaga ctaccgtgga gcgcatgtat ggctatgccg
     7261 aatggcttcc ccttgctacc aacaaaggac tgtttgcttt ggataaaagg cagcaggtag
     7321 atgcgtacca tccggctgat tactacttcc aattgctgca acagatcccg caggagaaga
     7381 atttgctcaa tcaaaaactg ttctgggaaa tgaaagggtt tcttcccgat cataacctta
     7441 actataccga taaaatgagc atggcagttg gtgtggaagc cagggtacct ttcctggata
     7501 ctgaattggt tgccttttcg acccaattgc atcc
//
LOCUS       DATIQF010000150         5114 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_93501, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000150 DATIQF010000000
VERSION     DATIQF010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5114
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93501"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            39..407
                     /gene="crcB"
                     /locus_tag="VLL95_02415"
     CDS             39..407
                     /gene="crcB"
                     /locus_tag="VLL95_02415"
                     /inference="COORDINATES: protein motif:HMM:NF014584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:1903425 - fluoride transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:1903424 - fluoride transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HSR37743.1"
                     /translation="MKQILILGSGGFIGTLLRYWVQVFFARQFSILFPIGTFIVNITG
                     CLAIGLLYGMANRHNWLSTEWRLFLITGFCGGYTTFSAFAFEGVSMLKQGHWMPFLLY
                     TLLSVMVGLLATMVGYALTK"
     gene            complement(526..1989)
                     /locus_tag="VLL95_02420"
     CDS             complement(526..1989)
                     /locus_tag="VLL95_02420"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HSR37744.1"
                     /translation="MTASNMHHIKIVHLSLLTGFLLLIGGCKKSSDLAPSVPVDEVIV
                     SPPNPLFRTSVPRSDYDIVAVRPTRNSITLSILSYKTCDAKIEYSVAGRADFKTLSIS
                     LTGNNPALAVLDNLLPAQAYDYYYSYKLAGTSSYIKSPKYSFTTARDAGQPFVLALTA
                     DSHLDMRTDTAVYRKTLDNLFEDKPDFMVELGDTYMNDKYGSDFSMAFYNYLAQRYFF
                     GKVCHSMPLFFVQGNHDGEAGIYNDMTAQSRAVWSNNMRKKYFPMPEPGTYYRGNANK
                     DTYAGYLQNYYAWEWSNALFIVLDPFWYSPVASANDPWARTLGEEQYNWLKETLQNSR
                     ATFKFVFLHNLVGGIDIDGKGRGGVEAVPFFEWGGKSLSGLNEFAARRPKFEMPIHQL
                     LVKYGVNAVFHGHDHFYGYQQMDGIVYQEIPQPSTITGSNPVQAADYGYRQGTFMGGS
                     GYLRLTIGASSAKVEYIGTDIQVQSRNKSVWHQYILN"
     gene            complement(2005..3426)
                     /locus_tag="VLL95_02425"
     CDS             complement(2005..3426)
                     /locus_tag="VLL95_02425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37745.1"
                     /translation="MNSSIRSVASLLIMMVAGIGCSKQFNDAGSSQLENVPVSYDTSG
                     KVMAGVPTNSSVTLNLLFPYATECSVSYGISPDALMPASETISLSAGVPKEMVLRNLQ
                     AGKKYFYRLHYKEPGSSTSQSSPLYSFVTQRQPGASFSFGVQGDSHPERTGKMFSSDL
                     YKTNMRNVSSQGVDMYFTMGDDFSLQRLIQFNTANQLNVEGIYALQRPYLGMVASNAS
                     VFLVNGNHEEAAMYRLDGTATNPAVLAGNARKKFFPVPQPGSIYTGDANPLNFVGNLA
                     DYYAFNWGDALFVVIDPYWHTPVNGDLWDITLGKEQYDWFKATLLNSTAKFKFVFTHH
                     VLGTGRGGIEMANLAEWGGRSPNGQWEFDKFRPGWNDPIHQIMVKAGVTVFFQAHDHL
                     YCRQELDGIVYQSVPNPADDTYTAFNDSAYTSGVKLPNSGFLKVQVSPQSVKVDYINA
                     VLPANESTTNRNGMIRHSYTITK"
     gene            complement(3432..4751)
                     /locus_tag="VLL95_02430"
     CDS             complement(3432..4751)
                     /locus_tag="VLL95_02430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37746.1"
                     /translation="MKTSWILIPAVCLHLAACKKETIYTPLNNPVDYTQQMAPVSTRY
                     SLEQAMSDNGQLMTIAFSGLAFITGSDGADAFFPPGKVADFFGFQYMRDIDDAGYGHN
                     TQFLTRAANNVLKILNSTQKAKLVSLAKEQASLYTQFAYNRFPLMNAFRRNLNGDIPA
                     GSTGFSMERAKAYTAKLYKLDADLSYNRAVMMGELVQSLTADQKTYLAAMLFNNFNTW
                     PDVPEDADLKRGMTNNEFVAVMTYASEFFSWYKGGLNADIYFCPERHGTYFGGFFLKD
                     YPAMNNPNYFIPLDQTGECGKAFLEALNTTQRSLIATIIPEQKATLAEIATVRESICK
                     EMRKAMNGQAIDKAAIFQWINRYGELDGYMSALYATRFAEVKKTLTAAQMQTLKTIRN
                     LDVVPIGAFRFATSVAMPALPNTDFFFGVGEMPANAGSFTPPADFSK"
     gene            complement(4825..>5114)
                     /locus_tag="VLL95_02435"
     CDS             complement(4825..>5114)
                     /locus_tag="VLL95_02435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37747.1"
                     /translation="VVGAMRGKVALDPATPAPENQILPQAFAKGTRPATTPLNGAQIT
                     DFVKQGDIGYLLTYRIGTKNGYVQYSWDASNKYTFRLTDTSGAVTVNVYQR"
BASE COUNT         1208 a         1246 c         1280 g         1380 t
ORIGIN      
        1 gaacatccac gactttcaaa ttcttaccaa ctcgttcaat gaaacaaatc ctcattcttg
       61 gttccggcgg attcattggc accctgttgc gctactgggt gcaggtcttt tttgcccggc
      121 agttttccat cttgtttccc atcggcactt tcatcgtcaa cattaccggg tgtcttgcca
      181 ttggtttgct ttatggaatg gccaatcgcc acaactggct cagcaccgaa tggcgccttt
      241 tcctcatcac cggcttctgt ggtggttaca ccaccttttc tgcttttgca tttgaaggag
      301 tgtcgatgct gaaacaaggc cattggatgc ctttcttgtt gtacacgctg ctgagcgtaa
      361 tggtgggctt gcttgctacc atggtgggtt acgcactcac caaataagtc agttcgataa
      421 aaacaacagt tgaaaatact gcacccgatt ctgactaaca tcgatgatga atatcagatg
      481 gcattgagca acggcgttgg ccgggcatcc ttttccgatc cattttcagt tgagaatgta
      541 ttggtgccaa acagatttgt tgcgggactg tacctggata tcggtgccta tgtattctac
      601 ctttgctgag ctggcaccaa tggtaagacg cagatacccc gagccaccca taaatgtacc
      661 ctgccgatat ccataatcgg ctgcctgcac cggatttgaa ccggtaatgg tagaaggctg
      721 cggaatttcc tggtaaacaa tgccatccat ttgctgatag ccgtaaaaat ggtcatgccc
      781 atgaaaaacc gcattcacac cgtatttcac cagcaattgg tgaatgggca tttcaaactt
      841 tggccgcctc gctgcaaact cattcaggcc actcaggctt ttgccacccc attcaaaaaa
      901 gggcaccgct tccactccgc cacgcccttt gccgtcgata tcaatcccac cgacaaggtt
      961 gtgcagaaag acgaatttga aagtggcacg gctattctgt aaggtttcct tcaaccaatt
     1021 gtactgttct tcaccaaggg tgcgggccca tgggtcgttg gcactggcca caggtgaata
     1081 ccagaatgga tcaagcacaa taaagagggc gttggaccac tcccaggcat aataattctg
     1141 caggtagcct gcataggtgt ctttgttggc gtttcccctg taataggtcc ccggttcagg
     1201 catcggaaaa tattttttcc gcatgttgtt ggaccaaact gcacggctct gtgcagtcat
     1261 gtcgttgtaa atgccggctt cgccatcgtg attgccctgc acaaaaaaca ggggcatgga
     1321 atggcatact ttcccgaaga aataccgctg cgccaggtag ttgtaaaacg ccatcgaaaa
     1381 atcgctgccg tatttatcgt tcatgtaggt atcgcccagt tcaaccatga agtcaggctt
     1441 gtcttcaaaa agattgtcga gtgtttttct gtacaccgcc gtgtcggtac gcatgtcgag
     1501 atgcgaatcg gctgtaagtg ccagcacaaa aggctgccct gcatcacgag ccgtggtaaa
     1561 actatattta ggcgatttga tgtaggagga agtgcctgcc agtttgtagc tataataata
     1621 atcgtaggct tgtgccggta agagattatc gagcactgct agggccggat tgttaccagt
     1681 tagtgaaata ctcagcgtct taaagtcagc acggccagca acactgtatt caattttagc
     1741 atcgcaggtt ttgtacgaca atatggagag tgtgatggag ttgcgggtcg gtcgtacagc
     1801 tacaatatca taatcggacc gcggtacaga tgtacggaac aatggattgg gtggggatac
     1861 aatcacttca tccacaggaa ccgatggtgc caggtcggag gatttcttgc atccgccgat
     1921 cagcagcaga aaaccggtca gcagggaaag atgaactatt ttgatatggt gcatgttcga
     1981 tgctgtcatt tcaattggtt tatgtcactt cgtgatggtg tatgaatgcc gtatcattcc
     2041 gtttctgttg gtggtgcttt cattggctgg taacaccgca tttatgtaat ccacttttac
     2101 cgattgaggc gatacctgca ctttcaggaa tcctgaattg ggtagtttga cgccacttgt
     2161 gtatgccgaa tcattaaatg ccgtgtaggt atcatcggcc gggttgggta ccgactggta
     2221 cactatgcca tcaagttcct gcctgcaata caaatggtcg tgggcctgga aaaaaacggt
     2281 gacgccggct ttcaccatga tttggtgaat gggatcgttc catcccggcc ggaatttgtc
     2341 aaactcccac tggccattgg ggctacggcc accccattcg gccaggttgg ccatttctat
     2401 accgcccctg cctgtgccca gcacatggtg ggtaaataca aacttgaatt tggctgtgct
     2461 gttgagcaag gtggctttga accaatcata ctgctccttg ccgagggtaa tatcccatag
     2521 gtcaccgttt actggcgtat gccaataggg atcgatcacc acgaataagg catcgcccca
     2581 gttgaaggca taatagtcag caagattgcc cacaaaattc aacgggttgg catcgccggt
     2641 gtaaatactg cctggttgtg gcacagggaa aaatttcttc cgggcattgc cggcaagcac
     2701 ggcagggttg gttgctgttc catcaagccg gtacatcgct gcttcttcat gattgccgtt
     2761 gaccaaaaac accgaagcat tggatgcaac catacccaga taagggcgct gcaacgcata
     2821 aatgccctct acattgagct ggttggcagt attgaattgg atgaggcgtt gaagactgaa
     2881 atcatcgccc atggtgaagt acatgtccac gccttgagat gaaacattac gcatgtttgt
     2941 tttgtacaag tccgagctga acatcttgcc cgttctttca ggatgcgaat cgccttgcac
     3001 accaaaagaa aagctggcgc cgggttggcg ctgggttaca aaactgtaga ggggtgatga
     3061 ttgcgaagtg gaagaccccg gctccttgta atgcagccgg tagaaatatt ttttgcctgc
     3121 ctgcaaattc cgcagcacca tttccttagg cacacctgcc gaaaggctga tggtttcaga
     3181 agcaggcatc aacgcatcgg gcgaaatgcc ataactcacg ctacactcgg tagcgtacgg
     3241 aaaaagcaaa ttgagtgtaa cggaactatt ggtaggtacg ccagccatca ccttccccga
     3301 cgtatcatag cttaccggca cattttccag ctggctgctt cccgcatcat tgaactgctt
     3361 tgagcagcca atgcctgcaa ccatcatgat aagcaatgag gcaactgatc tgatcgatga
     3421 attcatttgt cttattttga aaagtcggct ggtggggtaa agcttccggc attggcaggc
     3481 atttcgccca cgccaaagaa gaaatcggta ttgggtaaag cgggcattgc caccgatgtg
     3541 gcaaaccgga atgctcctat tggcaccacg tcaagattcc tgatggtttt caaggtctgc
     3601 atttgtgcag ccgtcagggt cttcttcact tcggcaaacc gtgtggcata cagcgccgac
     3661 atgtagccat ccaattcacc atacctgttt atccattgga aaatggcggc cttatcgatg
     3721 gcttgtccat tcatggcttt gcgcatttcc ttgcatatcg attctctcac ggtggctatt
     3781 tcagccagcg ttgctttttg ttcgggtatg atggttgcaa tcaggcttcg ctgcgtagta
     3841 ttcagtgctt ccaggaaggc ctttccgcat tctccggttt ggtcgagtgg aataaaatag
     3901 ttggggttgt tcatagccgg gtagtctttc aggaagaacc cgccgaaata cgtaccgtgg
     3961 cgttcagggc agaaatagat atcggcattg agcccgcctt tataccacga aaagaattca
     4021 ctggcgtaag tcattactgc cacaaactcg ttgttggtca tgccccgctt cagatcagca
     4081 tcttccggca catcgggcca ggtgttgaaa ttgttgaaca gcatggcagc gaggtaggtc
     4141 ttctgatcgg cggtcaggct ttgcaccagt tcgcccatca tcacggcccg gttgtaactc
     4201 aggtcggcat ccagtttgta cagcttagcc gtgtaggctt tggccctttc catactaaag
     4261 cctgttgatc cggcaggaat atcaccgttc aggtttcttc tgaaagcatt cataagcgga
     4321 aaacggttgt aagcaaactg tgtgtacagc gatgcctgct cttttgccag gcttaccaat
     4381 ttggcttttt gcgtgctgtt caaaatcttg agcacattat tggcggcacg ggtaaggaac
     4441 tgtgtgttgt gaccatagcc tgcatcatca atgtcccgca tgtattggaa accaaaaaag
     4501 tcggccactt ttcctggcgg gaaaaaggca tcagcaccat cgctgccggt aataaatgcc
     4561 agtccgctaa aagcaatggt catcagctga ccgttgtcgc tcatggcctg ctccaggctg
     4621 tagcgagtgc tcaccggcgc catttgctgg gtataatcta ccgggttgtt cagtggggta
     4681 tagatggttt cttttttgca ggctgcaagg tgcaagcaaa cagcggggat cagtatccat
     4741 gaagttttca tatcgttgat tttacatttt ctggctattg ttattaatct cggttgcggc
     4801 atcatcattg accgatgttg cccgtcatcg ctggtaaaca tttaccgtta cggcgccgga
     4861 agtatctgtc agcctgaatg tgtatttgtt gctggcatcc caactgtatt gcacatagcc
     4921 atttttggtg ccaatacggt aggtgagcaa atacccaatg tcgccctgct ttacgaaatc
     4981 cgttatctgc gctccgttca atggcgtggt agctggtcgt gtccctttgg cgaatgcttg
     5041 cggtaaaatc tgattttcag gagccggggt ggcggggtcc agcgcaacct ttccccgcat
     5101 ggcgcctact acat
//
LOCUS       DATIQF010000151         3092 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_200076,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000151 DATIQF010000000
VERSION     DATIQF010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3092
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200076"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1127
                     /locus_tag="VLL95_02440"
     CDS             <1..1127
                     /locus_tag="VLL95_02440"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF013015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HSR37748.1"
                     /translation="GRSDRAVVAACSYETRRYGVRSGMAMKLARRLCPHAIIISGDAD
                     SYSHHSRMVTDIIASRVPVYEKSSIDEFYVDLTGMDRFFGCEKYIAEVRQYIMKESGL
                     PISYGLSANKLVSKVATGEAKPCGTLAVARGTERFFLHPLDIEKMPMIGEKTGTLLRQ
                     MGVETIGTLSQIPAIYLENLLGKNGIELWRRAQGMDDSPVIPYREQKSIGTESTFETD
                     TIDMQFLHRTLVRMTEQTAFELRQQNRLTGCVTVKIRYSDFNTVTKQQVIPYTSADHV
                     LLQTAKDLFAKLYDRRLLVRLMGVRFSHLIPGNYQIHLWDDTEEMINLYQAIDSVKNR
                     FGEDALLKGGGLQETSAERKTGLRQKMPVGRLRRKAGKPG"
     gene            1270..1416
                     /locus_tag="VLL95_02445"
     CDS             1270..1416
                     /locus_tag="VLL95_02445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37749.1"
                     /translation="MKSFRMIIQRGLGGILLAATMFSLQASAQGTRLLRQPSVSATQV
                     AFVY"
     gene            1429..3066
                     /locus_tag="VLL95_02450"
     CDS             1429..3066
                     /locus_tag="VLL95_02450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37750.1"
                     /translation="MADLNGQNVLRLTSTPAVETDPHFSPDGQWIAFTSNRSGSNAVY
                     VVSAKGGEAVRLTWHPASSVARGWTPDDSQVLYASDRETAPVTYNRLWTVSVKGGPPS
                     LLARQWGNDGSYAPDGKRMVIDKMDRWDVEWRAYRGGQNTPLIILNLADYSETLLPNP
                     NRSTDIQPLWLGNKIFFLSDREGGVANVWSYDPANGSLSQLTKFKGADVKWLAGHGNM
                     LVYEREGWLHQMDLNGNGSKQIAINVVGDFPWAAPRWQNVGRSISWASISPTGKRAVM
                     ESRGEVFTVPVENGDVRNITQSSGAADRAPLWSPKGDNIAWFSDAGGKGYQLMLASQD
                     GMGKPRSISIGESKMAWEPTWSPDGKYIAFADDDVRIRIIDVAAGTIETADVGGVNIE
                     RGDMGLTWSPDGQWLAYSKSGSNMLRSIKVYNVKTKKVQSLTNAFADAFSPAWDRDNK
                     HLYFLASTELALGSGWANTSSQNARPEYEAYVINLRKGDQSPFKPTSDEEEVKKEEKP
                     EAKTEEKPKTEEKPKTEEKPKEPAKNGADKPKDEVVI"
BASE COUNT          794 a          819 c          893 g          586 t
ORIGIN      
        1 gcggccgcag cgaccgggca gtggtggcgg cctgcagcta cgaaacgcgg cgctatgggg
       61 tgcgcagtgg catggccatg aaactggccc gccgcctttg tccgcatgcc atcatcatca
      121 gtggcgatgc tgacagttac agtcatcaca gccgcatggt taccgatatc atagccagca
      181 gggtgccggt gtacgaaaaa agcagcatcg atgaatttta tgtggacctc acgggcatgg
      241 accgtttttt tggctgcgaa aaatacattg ccgaagtgcg gcagtacatc atgaaagaaa
      301 gcggcctgcc catcagttat ggcctcagtg ccaacaaact ggtgagcaag gtggccaccg
      361 gcgaagccaa gccctgtggt acgctggctg tggcccgtgg caccgaacgt ttttttctgc
      421 atccgctgga cattgagaaa atgccgatga taggagagaa gaccggcacg ctgttgcggc
      481 aaatgggcgt ggagaccatc ggtacgctca gccagatacc ggccatttac ctggaaaacc
      541 tgctgggcaa aaacggcata gaactgtggc gtcgggcaca gggcatggac gattcgccgg
      601 taatacccta ccgggagcaa aaaagcattg gcacggagag cacgtttgaa accgatacca
      661 tcgacatgca gtttttgcat cgtaccctgg tgcgcatgac ggagcaaaca gcatttgaac
      721 tgcggcagca aaaccggctt accggttgtg ttacggtcaa gatccgttac agcgatttta
      781 atacggttac caagcaacaa gtcattcctt acacttctgc cgatcatgtg ctgctgcaaa
      841 ccgcgaagga tctttttgcg aaactgtacg atcgcaggtt gcttgtgcgc ctcatggggg
      901 tacgtttcag ccatcttatt cccggcaatt accagataca tctttgggat gatacagaag
      961 aaatgatcaa tctctaccag gccatcgaca gtgtaaagaa ccgctttggc gaagatgcct
     1021 tgctgaaggg cggcggcttg caggaaacga gtgccgaacg caaaacaggc ctgcgtcaaa
     1081 aaatgccggt ggggcggctg cgccgaaagg ccgggaaacc ggggtaggca gcattgagca
     1141 gtccagccgg cagaaatccc catgaccggt cactggcttt tgatcaatgg tttttttgcc
     1201 ccgccaattg cgcttacatt gaagcgtttt caaaaaataa tgcttgtcat cattcaaaac
     1261 acctactgca tgaaatcatt tcgaatgatc atccaacgtg ggctgggagg catcctgctg
     1321 gctgccacca tgttcagcct gcaggccagc gcacagggca cccgcctgct gcgccagccc
     1381 agcgtaagcg ccacccaggt ggcttttgta tactgagccg acctctgggt ggccgacctc
     1441 aacgggcaga acgtgctgcg tctcaccagc acgccggccg tagaaacaga tccgcatttt
     1501 tcacccgatg gccagtggat cgcctttacc agcaaccgca gcggcagcaa tgccgtgtat
     1561 gtggtaagtg ccaaaggtgg cgaagccgta aggcttacct ggcatcctgc cagttcggtg
     1621 gcccgtggct ggacacccga tgacagccag gtgctgtatg cttcggacag ggaaacagca
     1681 ccggtaacgt ataaccgctt gtggactgta tccgtaaaag gcggaccgcc cagcctgttg
     1741 gcccgccagt ggggcaatga tggcagctat gcccctgatg gcaaacgcat ggtgatcgac
     1801 aaaatggatc gctgggatgt ggaatggcgg gcttaccgcg gcggacagaa cacaccgctc
     1861 atcatcctca acctggccga ttacagtgaa accctattgc ccaatcccaa ccgcagcacc
     1921 gatatccagc cgctgtggct cggcaacaaa atattcttcc taagcgaccg cgaaggaggg
     1981 gtggccaatg tatggagcta tgatcctgcc aatggaagtc tcagtcagct caccaagttc
     2041 aaaggggccg atgtgaaatg gctggccggc catggcaata tgctggtata cgaaagggaa
     2101 ggctggctgc accagatgga cctcaatgga aacggcagta aacaaatagc tattaacgtc
     2161 gtaggtgatt ttccatgggc cgcaccccgc tggcaaaatg tgggtcgcag catcagctgg
     2221 gccagcatca gccccacggg caagcgtgcc gtgatggagt cccgcggcga ggtatttacg
     2281 gtgccggtgg agaatggcga tgtgcgcaac attacgcaaa gcagcggcgc tgccgaccgt
     2341 gccccgttgt ggtcgcccaa gggtgacaat attgcctggt tcagcgacgc tggcggcaaa
     2401 ggttaccaat tgatgctggc atcgcaggat ggcatgggaa agccccgcag catcagcatc
     2461 ggcgaatcga agatggcttg ggaacccacg tggagccctg acggcaaata catcgctttt
     2521 gccgatgatg atgttcgcat tcgcatcatc gatgtagcgg ccggaaccat agaaacggct
     2581 gatgtgggtg gcgtgaatat tgagcgggga gatatgggtc ttacctggag ccccgatggc
     2641 cagtggttgg catacagcaa atcaggcagc aacatgctgc gcagcatcaa ggtgtacaac
     2701 gtaaaaacca aaaaggtaca aagccttacc aacgcttttg ccgacgcatt ctcaccagcc
     2761 tgggaccgcg acaacaagca cctatatttt ttggccagta ccgaactggc actgggcagc
     2821 ggctgggcca atacgagctc gcaaaatgca aggcccgaat atgaagccta cgtgatcaat
     2881 ttgcgcaaag gcgaccagag tccgttcaag cccaccagcg acgaggagga agtgaaaaag
     2941 gaagaaaagc cggaagcgaa aacggaagaa aaaccgaaga cggaagaaaa acccaagacc
     3001 gaggaaaagc caaaggaacc agccaaaaat ggcgccgaca aaccgaaaga tgaggtggtg
     3061 atatagatcg gcacatgccg gcgaccatca tg
//
LOCUS       DATIQF010000152         1657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_93512, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000152 DATIQF010000000
VERSION     DATIQF010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93512"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1574)
                     /locus_tag="VLL95_02455"
     CDS             complement(<1..1574)
                     /locus_tag="VLL95_02455"
                     /inference="COORDINATES: protein motif:HMM:NF026035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37751.1"
                     /translation="MGNKVYFRSDRNGEFNLYSYDVASKAVAQHSRFDDFPVIWLNAN
                     GGDIIFAQAGYLHVFNTAANKTNTLKIGIAADLLDQRERYYKGDEYIRSGHVSPSGAR
                     VVVDFRGDIITLPAQKGDPINLTNTPGVHETYPAWSPDGKSIAYFSDASGEYALHIKN
                     QNGLEEAKAFPLKGSGFYSNLHWSPDSKKLCFIDNGRRLYLMEVATGKVTTIAEDVHY
                     VPGPFRELFGSWSNDGQFVSYTQITATNFERAFVYSVAENKSYPVSDGLSNVSEPVFD
                     PSGKYLYMLASTNAGPVVNWFDQSNQDMRATNTIYLVTLQADTKSPLARENDMEEVKE
                     AAAEKPDTSKAKAASKTMRIDWAGLDQRILPLPIPQGDYRNLAVGKEGEIYYIAAAAS
                     GPSQLFQYSLKKRKAENIMPAEAFMIAAKGDKMFYYSGGKWGMTATGQKPGPDAIINT
                     GSLQVKNAPAEEWANIFNEAWRVNRDYFYDPGMHGANWEAMRKKYAVFLPHVAAKSDL
                     YNVMQWMFSELAVGHHR"
BASE COUNT          307 a          437 c          484 g          429 t
ORIGIN      
        1 cggtggtggc ccactgccag ttcgctaaac atccattgca tcacgttgta caggtcgctc
       61 ttggctgcca catgcggcag gaacaccgca tactttttgc gcatggcttc ccaattggcg
      121 ccgtgcatac cggggtcgta gaaataatcg cggttcaccc gccatgcttc gttgaagata
      181 ttggcccatt cttccgccgg ggcatttttc acctgcagcg aaccggtgtt gatgatggca
      241 tcgggcccgg gcttttggcc ggtggccgtc atgccccatt tgccgccgct gtagtaaaac
      301 attttgtcgc ccttggcggc gatcatgaat gcttcggccg gcatgatgtt ttcagccttg
      361 cgctttttga ggctgtattg gaacagctgc gaaggcccgc tggcagcggc ggcgatgtaa
      421 tagatctcgc cttctttgcc cacggccagg ttgcggtagt cgccttgtgg tatgggcagg
      481 ggcagtatgc gctgatcgag accggcccaa tcgatgcgca tggttttgga agccgctttt
      541 gccttgctgg tatccggttt ttcggcagcc gcttctttta cttcttccat atcattctca
      601 cgggccagtg gcgatttggt atcggcctgc agcgtcacca ggtaaatagt attggtggca
      661 cgcatgtcct ggttcgactg gtcgaaccag ttgaccacgg ggccggcgtt ggtactggcc
      721 agcatgtaga ggtacttgcc cgaagggtcg aacacgggtt cactcacatt gctgaggcca
      781 tcgcttacgg ggtacgattt gttttcggct acgctgtaca caaaggcccg ctcaaaattg
      841 gtggcggtga tctgcgtata cgaaacaaac tgcccgtcat tagaccagct gccaaacagt
      901 tcgcggaaag gaccgggcac atagtgcaca tcttctgcaa tcgtggtcac tttgccggtg
      961 gccacttcca tgaggtacag gcggcggcca ttgtctataa aacagagttt tttgctgtcg
     1021 gggctccagt gcaggttgga atagaagcca gagcctttca atggaaatgc ctttgcttct
     1081 tcgaggccgt tctggttctt gatgtgcagg gcatattcac cgctggcatc gctgaagtaa
     1141 gcgatcgatt ttccatcggg gctccaggcg gggtaggttt cgtgcacacc cggcgtattg
     1201 gtcaggttga tggggtcgcc tttttgtgcc ggcagtgtga tgatatcgcc acgaaaatcc
     1261 accactaccc gtgcacctga gggtgacaca tggccgctgc ggatgtattc atcgcctttg
     1321 taatagcgct cccgctggtc gagcaggtcg gcggcgatgc ctattttaag ggtgttcgtt
     1381 ttgttggccg cggtgttgaa cacatgcagg taaccggcct gtgcaaaaat gatatcgccg
     1441 ccattggcat tcagccagat cacggggaag tcatcaaagc ggctgtgctg tgccactgct
     1501 ttgctggcta catcgtagct atagaggttg aactcgccat tgcggtcgct gcggaaatac
     1561 actttgttgc ccacccatac cggcttggtg tcgttgctgc caccggcggg tttggggatc
     1621 taggtaacgg catgcgtttt cacatcgtac acccaaa
//
LOCUS       DATIQF010000153         1688 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_154440,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000153 DATIQF010000000
VERSION     DATIQF010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1688
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154440"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..727
                     /gene="pgk"
                     /locus_tag="VLL95_02460"
     CDS             <1..727
                     /gene="pgk"
                     /locus_tag="VLL95_02460"
                     /inference="COORDINATES: protein motif:HMM:NF012389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HSR37752.1"
                     /translation="VIADYFEAGKKMFGLLMEGEVLAAEKVLHESRRPFTAILGGAKV
                     SDKILIIENLLERATDIIIGGGMAYTFMKATGGKIGGSLCEEDRIQTAIDLLKKAEEK
                     GVQIHLPSDSIIADKFDAEANTSAAPSNNIPDGWLGLDIGPEACGQFSNVIKASKTIL
                     WNGPMGVFEMAKFQHGTKAIADAVAEATEAGAFSLVGGGDSVAAVNKFGYTDKVSYVS
                     TGGGAMLEYFEGKVLPGIAAIKE"
     gene            807..1529
                     /locus_tag="VLL95_02465"
     CDS             807..1529
                     /locus_tag="VLL95_02465"
                     /inference="COORDINATES: protein motif:HMM:NF025221.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4197 domain-containing protein"
                     /protein_id="HSR37753.1"
                     /translation="MKTLIRSLIIMMAAFAMNSCASLQKAAGLTELEAILGLKDALNQ
                     GMFRSFDAFANPNQEGNAIVRFALPEQAAAIQSTLNSLGLGSALDKATAKFTKAMGDA
                     VVAAKPIFTNSIKKLTIKDAFNILVTDNMHAATDYFKRVNKPLLLDAFRPIVDSTIAA
                     EQADLDWKKVTSVYNLIPLKKEPLEPNLTDFISARVIDGMCLIMANEEENVRSKYSFR
                     KTDMMQKAFGYAEQELKRRMTR"
BASE COUNT          480 a          419 c          409 g          380 t
ORIGIN      
        1 cgtgattgcc gattactttg aagccggtaa gaaaatgttt ggcctgctga tggaaggtga
       61 agttttggcc gctgaaaaag tactgcatga aagccggagg ccctttactg ccattttggg
      121 cggggccaaa gtgagcgaca aaatcctgat cattgaaaac cttttggaac gtgccaccga
      181 catcattatt ggtggcggca tggcctacac ttttatgaag gccaccggcg gtaaaatcgg
      241 cggcagtctt tgtgaagaag accgcatcca aactgccatc gacctgctga aaaaagcgga
      301 agaaaaaggt gtacagatcc acctgcccag cgacagcatc attgccgaca agtttgatgc
      361 cgaagccaac acctctgccg ctcccagcaa caacattcct gacggatggc tgggactcga
      421 cattgggccg gaagcatgtg gtcaattttc aaacgtaatc aaggcttcaa aaacaatact
      481 ctggaacggg ccgatgggtg tatttgaaat ggcgaaattt caacacggca ccaaagccat
      541 tgccgatgct gtagccgaag ccactgaagc cggtgcattc agcctggtag gtggtggcga
      601 cagtgtggcc gccgtcaaca agtttggtta taccgataaa gtaagctacg tgagcaccgg
      661 cggtggagcc atgctggaat actttgaagg caaagtactg cccggtatag ctgccatcaa
      721 ggaataatcc aggtgttgat tcgaaagtat tctgcttaac ttgtaagcgc agtcgataat
      781 tgactgcgct tattttttgc atgattatga aaacactgat ccggtcactc atcattatga
      841 tggcggcatt cgccatgaac agctgtgcct ccttgcaaaa agcggcaggc ctcaccgaac
      901 tggaagccat cctggggttg aaagatgcat tgaaccaggg catgttcaga agctttgatg
      961 cttttgcgaa tcccaaccag gaaggcaacg ccattgtaag atttgcactg cctgaacaag
     1021 cggcagccat tcaatcaaca ctcaatagcc tgggcctggg cagcgcactg gacaaagcca
     1081 ccgccaaatt caccaaggca atgggtgacg cggtggtagc agccaaacct attttcacca
     1141 actccatcaa aaaactcacc ataaaggatg cattcaatat cctggtgaca gacaacatgc
     1201 acgcagccac cgattacttc aaacgggtca acaaaccctt gctgctcgat gccttccgcc
     1261 ccattgtaga cagcactatt gccgccgaac aggccgacct tgactggaag aaagtgacat
     1321 ccgtttacaa tttgatccca ttgaaaaaag agccattgga acccaacctc accgatttta
     1381 tttcagccag ggtcattgac ggcatgtgcc tcatcatggc caacgaagag gagaatgtcc
     1441 ggtcaaaata ttctttccgc aaaacagata tgatgcaaaa ggcatttggt tatgccgagc
     1501 aggaattaaa gcgaaggatg acacgatgaa aaaataatgc ccgaaaggaa ccaacttgtt
     1561 cctaaaaaac aatctcatct cccaatgcaa tttggccggg ttgcactacc aggagatttt
     1621 gcccgaacat tactttgttg ccggtcttcc ggtaagtgct taatgtgcga agaggctcct
     1681 ctcccttt
//
LOCUS       DATIQF010000154         2614 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_63113, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000154 DATIQF010000000
VERSION     DATIQF010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2614
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63113"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..474)
                     /locus_tag="VLL95_02470"
     CDS             complement(<1..474)
                     /locus_tag="VLL95_02470"
                     /inference="COORDINATES: protein motif:HMM:NF024724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HSR37754.1"
                     /translation="MESTINSIRTYNLNEEQERKEILRKYRALLRVLKPKLKPGDRAL
                     VRRAFEMAADAHKTMRRKSGEPYILHPIAVAMICVEEIGLGVRSTICALMHDTVEDTE
                     LTLEDVQREFGNEIARIVDGLTKISNVIDTSSSQQAENFKKILLTLTDDPRVILIK"
     gene            complement(552..923)
                     /locus_tag="VLL95_02475"
     CDS             complement(552..923)
                     /locus_tag="VLL95_02475"
                     /inference="COORDINATES: protein motif:HMM:NF012393.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES family protein"
                     /protein_id="HSR37755.1"
                     /translation="MMLTLDNTLKKLIVIGDRVLVRPSKADERTASGLYLPPGVQEKE
                     KVQQGYVIKTGPGYAIPVPVEDEPWKAGEEQVKYIPLQAREGDLAIFLLSGATEVMYE
                     GEKYFIVPQNAILMLEREEEF"
     gene            1123..1827
                     /locus_tag="VLL95_02480"
     CDS             1123..1827
                     /locus_tag="VLL95_02480"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR37756.1"
                     /translation="MDSKKYKILLCEDDTNLGMVLKNYLEINDYDVTLERDGRLGLAA
                     FQREKFDICLLDVMMPNMDGFTLAEEIRDVDPDIPLFFLSAKTMKEDIIQGYKLGADD
                     YITKPFDSEVLMHKIKAILKRNEELNREQENMEFDLGKFHFNPKLRELSIAGKTQTLS
                     PKENELLRMLAEHKNDLLPREKALKKIWGSDTYFNGRSMDVYIAKLRKYLKEDENLEI
                     VNIHGNGFRLVEKEVS"
     gene            2109..2411
                     /locus_tag="VLL95_02485"
     CDS             2109..2411
                     /locus_tag="VLL95_02485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37757.1"
                     /translation="MKNRKTLSVLRNLLLLFWFGWFALAGIIVTGIAVWLTSLSLSMT
                     NILLVGSVGGIVVGGFSAGFMLYLLWRKFGAAFLNGYVTLKMLRDSLFSLNTRLKP"
BASE COUNT          656 a          639 c          602 g          717 t
ORIGIN      
        1 tttgatcagg attaccctgg gatcatcggt aagggtcagc aatatcttct tgaaattctc
       61 ggcctgctgg ctgctgctgg tgtctattac gttgctgatt ttggtaagtc cgtctacaat
      121 gcgggctatt tcatttccaa actcacgctg tacatcttcg agggtgagtt cggtatcttc
      181 taccgtatcg tgcatcaggg cgcaaatggt actgcgcacc cccaggccaa tttcttccac
      241 acagatcatt gccacggcaa tcgggtgcaa gatgtaaggc tcgccacttt tgcgacgcat
      301 ggttttgtgt gcatcggccg ccatctcaaa ggcacgccga accagggcac ggtcgcccgg
      361 tttcaactta ggcttcagca cccgcagcag ggcacggtat ttccgcagga tctctttgcg
      421 ttcctgctct tcgttgaggt tgtaagtcct tatgctgttg atggtacttt ccaaaggcta
      481 tcgtgtggtt ggtaaatata ctagcaagat atgcgcttat gcggtttcgc tgcgtatcct
      541 accccttcca atcagaattc ctcttccctt tccagcatca ggatggcatt ctgcggcaca
      601 atgaaatact tctccccttc atacatcact tcagtagctc cgctgagcag gaagatggcg
      661 aggtcgcctt cacgggcctg caggggtatg tatttcacct gctcttcgcc tgctttccag
      721 ggttcgtctt ccaccggcac aggtatggca tagccgggcc ctgttttgat gacatagccc
      781 tgctgcactt tttccttctc ctgcacaccg ggcggcaggt aaagtccact ggccgtgcgt
      841 tcatcggctt tggaaggacg gaccagcaca cggtcgccaa tcacaatcag tttcttgagc
      901 gtattgtcta atgtcagcat catagcgaat gcgagtttac aaattgtatt tacaaatatt
      961 gtacagcgaa ggccatgcaa acaaattggc agacgccagt attcaggcta ccttccagca
     1021 ggcaatatgg caggattacc aaatagttaa ccgcctcatt aacaatttat tggacaggcc
     1081 cccagtaatt tctaatttta tttgtacaaa ccccataaca atatggatag caaaaaatac
     1141 aagattcttc tgtgcgaaga tgacaccaat ctcggcatgg tacttaaaaa ctacctagag
     1201 atcaacgact acgatgtaac actcgaacgt gatggtcgcc tcggattagc cgcctttcag
     1261 cgtgaaaaat tcgatatatg cctgctggat gtaatgatgc ccaacatgga tggctttaca
     1321 ctggctgaag aaattcgtga cgttgaccct gatattcccc tgttcttcct gagcgccaaa
     1381 accatgaaag aagacataat ccagggctac aaactgggcg ctgatgacta catcaccaag
     1441 ccttttgaca gtgaagtgct gatgcacaaa ataaaagcca tcctgaagcg caatgaagaa
     1501 ttgaaccgcg aacaggagaa catggaattc gacctgggca agttccactt caatcccaag
     1561 ttgcgtgaac tgagcattgc cggcaaaacg caaacgctga gccccaagga aaacgaattg
     1621 ctgcgcatgc tggcagaaca caagaacgac ctgttgcccc gcgaaaaagc cctgaaaaaa
     1681 atctggggca gcgataccta cttcaatggc cgcagcatgg atgtgtacat tgccaagctc
     1741 cgcaaatacc tgaaagaaga tgagaacctg gaaattgtga atatccacgg caacggtttc
     1801 aggctggtag aaaaagaagt gagctgattt ccagatattt agaattgaga aaattcccga
     1861 tgcccggcgc ttcctgtgcc gggcatcttt ttttgcacag gcaccaacaa aagccattta
     1921 taaatcgtta tttcagcaag gcttttgtgc acttttctac ccccgcttcg aatggcagtc
     1981 ttttcacttt tttgattgtg ccgcacatca caccttcctg caaatagttt cttaaatggc
     2041 attaaatgct gtcacatttg tggtcagcga ttcgttttgg tatagtatta gtaagtaatg
     2101 ctgtgcgtat gaaaaacaga aagacattaa gcgtgttgag aaacctcctt ctcttgttct
     2161 ggttcggatg gtttgctttg gccggcatca ttgttaccgg cattgctgtt tggctcactt
     2221 ccctgagcct ttccatgacc aatatattgc tggtgggcag tgttggtggt attgtggttg
     2281 gtggattttc agccgggttc atgctttacc ttctttggag aaagtttggc gccgcattcc
     2341 tgaatggcta tgtaaccctg aagatgttgc gtgattcatt gtttagcctg aacacacgcc
     2401 ttaagcctta atttcattcc cattttgttt ccggatcagg attatgatcg cgactggcag
     2461 tagccagccc ggtaggtttt aggattggtt gaagtgtgtt agttttaacc aaatcaattg
     2521 ccatgttgcc cggtacaaaa tttgaatcca tcgcagcata ccatgccgcc tttccccgtg
     2581 aagtacaatc gaaactgaag caaatgcacg acac
//
LOCUS       DATIQF010000155         3745 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_154468,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000155 DATIQF010000000
VERSION     DATIQF010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3745
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154468"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..189
                     /locus_tag="VLL95_02490"
     CDS             <1..189
                     /locus_tag="VLL95_02490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37758.1"
                     /translation="AERKRVEAQGISDYQRIISESLTDKQLQYENIKAMKELAQSQNS
                     KMIIMGRGSAPIILDGKN"
     gene            complement(367..693)
                     /locus_tag="VLL95_02495"
     CDS             complement(367..693)
                     /locus_tag="VLL95_02495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37759.1"
                     /translation="MAGRLLILPQPSIGIQSNSVIDLARQPLSPTVSSLGGRRALSVS
                     GDASGMAFSALYNCSQVQLGVAIDFPNRGPKKSLQRSSGRGASLNVCMSAESLLPSAG
                     KRLGLA"
     gene            1207..1761
                     /locus_tag="VLL95_02500"
     CDS             1207..1761
                     /locus_tag="VLL95_02500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSR37760.1"
                     /translation="MKQYLLAAGIALLSVACGNQADQPETTPEAASPEAAAAPAPTEI
                     GDPKLMDMGKAGLANLSKGDVAAWMNDFADNAVYQWNNGDSLAGKEAISKYWTDRRTN
                     ALDSITFSNDIWLPLKVNQPQNDRVAPGVWLLSWYQVDAKYKNGSKMTQWIHTTMHMN
                     DAGKIDRVIQYLDRAPINKAMSGK"
     gene            complement(1841..2392)
                     /locus_tag="VLL95_02505"
     CDS             complement(1841..2392)
                     /locus_tag="VLL95_02505"
                     /inference="COORDINATES: protein motif:HMM:NF022588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2911 domain-containing protein"
                     /protein_id="HSR37761.1"
                     /translation="MRSIITIVSLFIASASFAQSACLPLDEKLQADTSRKSVKTYAAT
                     AWGKDSVVINWYAPAVRNRTIWGGLVPFTEVWVTGAHFATHIDFRKKVTVNGVKLDKG
                     RYALFTIPRQNDWIVIINKNWEQHLADEYDPKDDVVRVTVQTQTTCPQAERLQWGFSA
                     TDAATGLLYMRWEKLQVAVPVSR"
     gene            complement(2413..>3745)
                     /locus_tag="VLL95_02510"
     CDS             complement(2413..>3745)
                     /locus_tag="VLL95_02510"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: protein motif:HMM:NF013565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HSR37762.1"
                     /translation="FRFAAFFFKVAGVGHVAYVAEDTIAKKAVLEKLEPMELVTKYTN
                     LFRWAMRQFNNIDPSIEPTATGHIVEQIEMIKKIMAEGYAYEVNGSVYFDVRRYADDF
                     KDSNPYGKLSGRVIDDMLETTRELEGQEEKRNKADFALWKKAPPEHIMRWASPWGEGF
                     PGWHIECSAMSSKYLGEEFDIHGGGMDLQFPHHESEIAQSSICHHGRLMARYWLHNNM
                     ITINGRKMGKSYNNVIKLTELFSGEHPLLEQPYHPMTIRFFILQSHYRSTLDFSNEAL
                     QASEKALKRLWEAYENLLKLDATAFPATGSDAALNDRVGKLVASFADDMNDDLNSAKV
                     IANMFELAPVINSIKGGQVKTEAVSAATIRLLQQEMKTWLEDIFGLQNPSAAAGSDDN
                     KLTAVMQVLIELRRQARARKDFQTSDAIRNQLAELGIQLKDEKDGTVSWTI"
BASE COUNT          809 a          972 c         1088 g          876 t
ORIGIN      
        1 gcagaacgca agcgggtgga agcgcagggc atcagcgatt accagcgcat catcagtgaa
       61 agcctgaccg acaagcagct gcagtatgaa aacatcaaag ccatgaaaga gctggcgcaa
      121 agccagaaca gcaagatgat catcatgggc aggggcagtg caccgattat tctggatggg
      181 aagaattagg gtgtcaaggt tgcatttatt gcgagctgca gcaggatgaa aagggatgcg
      241 aagcgacaag cttcgcacag ccagatccca ctgctattct tgtgcctgag gcaagtacca
      301 gtgcaaggtt ttgaaaaaaa atgtttccac tttttggcat tgccccaaaa agtggagcaa
      361 aaaggtctag gcgagcccaa ggcgtttgcc agctgatgga agcaacgatt ctgccgacat
      421 acatacgttt aggctggcac cgcggccgct gctgcgctgc aggctttttt tcggcccgcg
      481 gttgggaaag tcaattgcta cacctaattg tacctggctg caattataca aggccgaaaa
      541 cgccattccg ctggcatctc cgctaacgct gagggcccgc cggcctccca acgaacttac
      601 ggtagggctg agcggctgcc gggctaaatc aattacacta tttgattgta tgccgatcga
      661 aggctgaggc aagatgagaa gcctacctgc catttgcctc tgtttcatcg gaagggagga
      721 cgcctgccac cggcctgcca attattaacc actcaggatt ggaagtatcc cactggcacc
      781 gatgcgctgc agtttgccac aaagggggag gtgttggccc ggcaagccgg ccggaggcat
      841 cgggcttgcc ttgacttttt ggtccttttg cgtcaaggca aaaggacaag aatagtgtca
      901 gcatttatcc aggccttata gggagttggc tgctttgcca gatgctaaag atatggtgca
      961 caggttttgc caataatcag caatgaaaag gctgcagggt gtggggacac ttaccgccaa
     1021 aaaaggtttg tttctggcag gtccgctaac gaagggggcc ggccggcgaa cgagcattcg
     1081 gaattaccaa gcatgttcaa acatgcaaaa taaatttcat gtgatggctt gcattttgga
     1141 atggcgggca ttaccttact ggagcaccag cctgtggctg tggcattcac caaaaatcca
     1201 aaccccatga aacagtattt gctggcagcc ggcattgcgc tgctatcggt tgcctgtggc
     1261 aaccaggccg accaacccga aaccacccct gaggccgctt cacctgaagc cgcggccgcc
     1321 cctgctccta ccgaaattgg cgatcccaaa ctgatggaca tgggcaaggc cggactggcc
     1381 aacctgtcga aaggcgatgt agctgcctgg atgaatgatt ttgccgacaa tgccgtgtac
     1441 caatggaaca atggcgacag cctggccggc aaggaagcca tttcgaagta ctggaccgac
     1501 cgccgcacaa atgcgctgga ttccattaca ttctccaatg atatctggct gccgctgaaa
     1561 gtgaaccagc cgcagaatga ccgcgtggca cccggcgttt ggttgttgag ctggtaccag
     1621 gtggatgcca agtacaagaa tggcagcaag atgacccagt ggatccatac caccatgcat
     1681 atgaacgatg cgggtaaaat agaccgggtc attcaatacc tcgacagggc tccgatcaac
     1741 aaagccatgt cgggcaagta atcagtggta gatggtgttg tattcaaaca caaaagcctc
     1801 ccgacaagga ggcttttttt attaggttca tcaggtcgtt ttaccgggaa accggcacgg
     1861 ccacctgcag tttttcccag cgcatgtaca agaggccggt ggctgcatcg gtggcgctga
     1921 agccccattg cagccgctct gcctgagggc aggtggtttg cgtttgtacg gtcacccgca
     1981 ccacatcgtc tttggggtcg tattcatcgg ccaggtgctg ctcccagttt ttgttgatga
     2041 tcacgatcca gtcgttttgc cggggaatgg taaaaagggc atagcgtccc ttgtccagct
     2101 tcaccccatt gaccgtcact tttttgcgaa agtcgatatg ggtggcaaaa tgcgccccgg
     2161 tcacccacac ttcggtgaag ggcaccagtc cgccccagat ggtgcggttg cgcacggccg
     2221 gtgcatacca gttgatcacc acgctgtctt tgccccaggc ggtggcagca taggttttca
     2281 cgcttttgcg ggaggtatcg gcctgcagtt tttcgtcgag gggaagacag gccgactggg
     2341 cgaaggacgc agaggcgatg aacagggaaa cgatggttat gatgctgcgc atgctgttga
     2401 atgattgatg aattaaatag tccaggagac cgtgccgtcc ttttcgtctt tcagttgaat
     2461 gcccagttcg gccagctggt tgcggatggc atcgctggtc tggaagtctt tgcgggccct
     2521 tgcctgccgg cgcagttcga tgagcacctg catcacagcg gtgagtttgt tgtcgtcgct
     2581 gccggcggct gccgaaggat tttgcaaacc gaagatgtct tccagccagg ttttcatttc
     2641 ctgctgcagc aggcggatgg tggcggcact gaccgcttct gtttttacct gcccgccttt
     2701 gatgctgttg atgaccggtg ccagttcgaa catattggcg atcactttgg cgctgttgag
     2761 gtcgtcgttc atgtcgtcgg caaagctggc tacgagttta ccaacgcggt cgttgagggc
     2821 cgcatcgctg cccgtggcag gaaaggcggt ggcatccagt ttcagcaggt tctcgtaggc
     2881 ttcccagagg cgtttcagcg ctttctccga tgcctgcaag gcctcgttgc tgaaatcgag
     2941 ggtgctgcgg tagtggctct gcaatatgaa gaagcggatg gtcatgggat ggtaaggctg
     3001 ctccagcaag ggatgctccc cactgaacaa ctcagtcagc tttatgacgt tgttgtagct
     3061 cttgcccatt ttgcggccgt tgatggtgat catgttgttg tgcaaccagt agcgggccat
     3121 cagcctgccg tggtggcaaa tgctgctttg ggcgatctcg ctttcgtggt gcggaaactg
     3181 caggtccatg ccgccgccgt ggatgtcgaa ttcctcgccg aggtatttgc tgctcatggc
     3241 cgagcattcg atgtgccatc ccgggaagcc ttcgccccag gggctggccc agcgcatgat
     3301 gtgttccggt ggggcttttt tccagagggc gaagtcggcc ttgttgcgtt tctcctcctg
     3361 cccttccagc tcacgggtgg tttcgagcat atcgtctatc acccggccgc tcagcttgcc
     3421 gtagggattg ctgtccttga aatcatcggc atagcgacgc acatcaaagt acacgctgcc
     3481 gttcacttca taggcataac cttcggccat gatcttcttg atcatttcta tctgctccac
     3541 gatgtggccg gtggcggtgg gttcgatgct gggatcgatg ttgttgaact ggcgcatggc
     3601 ccagcggaac aggttggtgt atttggtcac cagttccatg ggctccagtt tttcgagcac
     3661 ggcttttttg gcaatcgtgt cttccgctac gtacgcaacg tgaccgacgc cggccacttt
     3721 gaagaagaag gccgcgaagc ggaag
//
LOCUS       DATIQF010000156         2946 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_63132, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000156 DATIQF010000000
VERSION     DATIQF010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2946
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63132"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1010
                     /locus_tag="VLL95_02515"
     CDS             <1..1010
                     /locus_tag="VLL95_02515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37763.1"
                     /translation="FRDRLSHRRYAVSSFGRVASFVKALEEDGKFLSTKAPKFRLQKV
                     NILFKDGKRGFPVHKLVAEHFLTKPSKDHTYVLHLDKDLHNNKTDNLKWATFDEATRH
                     FSGKDISKPQKIKFGAKEEVKVLRLPGLKKKYAITNTGRLISFSRTIEDGSELSLNIH
                     PQGYRIWRFRVNGESTHYLIHRLVAENFIKKPSKLHDYVIHLDHSKTNNNIKNLKWVT
                     YEEQRAHSAQSEASKANALRLSQWSRITGKGKKLTEANVRKIKEKLQASGKVNMKKIA
                     DDFGITPMQLYRIKNGENWDWVKVEGKAKAAKAAKPAKAAKAAKAAPKKAAAKKAAKK
                     K"
     gene            1085..>2946
                     /locus_tag="VLL95_02520"
     CDS             1085..>2946
                     /locus_tag="VLL95_02520"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HSR37764.1"
                     /translation="MPLSNTIEIYKASAGSGKTFSLTLKFLELALQHPQHYRRILAVT
                     FTNKATAEMKHRILEVLHGLATESKEVDHYRQKLLEKLPALSATDLQQLAHKIYANIL
                     HDYSRFSVTTIDSFVQRIIRGFAWELGIDGGFKLQLNTEPVKEALADKLYLRLDDDIH
                     LQRWVVDMARERLQEGKRWDFRDDMLNLSGELFKETFRKFETAISAYSPDELNHHFSE
                     LNKKVHAAIKGLENKWKEEGEAMLALLQQHGLQVEDFAYGTSGFANYFNKAAGGEIVE
                     PGARVLAVIADASKMLSKKPDADLKQKVDAISLTLQRSLQKMTDWYPDDINEYNTAKA
                     IKLNLAVLRLMHVFAEELGSYRKENNALLISDTHFLLRKLTEDSSASFIYEKTGQRYQ
                     HYLIDEFQDTSAFQWDNFVPLLTEALSYGQYNLIVGDVKQAIYRWRNGDWRLLLYKVQ
                     QRLKEFAPQVSTLQENYRSTQQVIAFNNLLFHLAPQLLQAELSASMSSADRQTKAALE
                     NAGYATVFNDAYSDSFQQMPARARQGGQVHIQWLEENEDSNYDEQVLPLLYEKIQQLL
                     ADGFSPSDMAVLTRTNKEAKQVVEYLVSAQQHSGQAFRVLSGEALMLAGNQAIQ"
BASE COUNT          850 a          783 c          711 g          602 t
ORIGIN      
        1 aattccgcga ccggctcagc caccgtcgct atgccgtatc cagcttcggc agagtggcca
       61 gttttgtaaa agccctggag gaagacggca aatttctttc gaccaaggct cccaagttca
      121 gactgcaaaa agtaaacatc ctgtttaagg atggcaaacg cgggtttcct gttcataagc
      181 tcgttgctga acacttcctg accaagccat ccaaggatca cacttatgtt ttgcacctcg
      241 acaaggattt gcataacaac aaaactgaca acctgaaatg ggccactttc gatgaagcca
      301 cccgtcactt cagcggcaaa gacatttcca agccacagaa aatcaagttc ggtgccaagg
      361 aagaggtcaa agtgctgcgc ctgccgggcc tgaaaaagaa gtacgccatc acgaataccg
      421 gaagactcat cagtttctcc cggactattg aagatggcag tgagctttca ctgaacatcc
      481 atccccaggg ctaccgcatc tggcgtttca gggtgaacgg tgaatctacc cactacctca
      541 tccacaggct ggtggcagaa aacttcatca agaagccaag caagctgcac gattacgtga
      601 tccatcttga tcattccaag accaacaaca acatcaagaa cctgaaatgg gtgacttacg
      661 aagagcagcg ggcccactcc gctcaaagcg aggcttccaa agccaatgct ttgcgtcttt
      721 cccaatggtc acgcatcacc ggcaaaggga agaaactgac tgaagccaat gtgcgtaaga
      781 tcaaggaaaa actgcaggca agcggcaaag tgaacatgaa gaaaattgcc gatgattttg
      841 gcatcacccc catgcaattg taccgcatca aaaacggtga gaattgggat tgggtaaaag
      901 tggaaggcaa ggccaaggct gctaaagcag ccaaacctgc caaggcagcg aaagcagcta
      961 aagcagctcc taaaaaagca gccgccaaaa aagctgctaa aaagaagtaa cacagttatc
     1021 cactactgat actttgaaag ccgtttgaat ggaaattgcc tttccgattc aaacggcttt
     1081 tttcatgccc ttatccaaca ccattgaaat atataaggcc agtgccggca gcggcaagac
     1141 cttctcactt accctgaaat tcctggagct ggcgcttcag catccccaac actaccggcg
     1201 cattctggct gttacattta ccaacaaggc caccgccgaa atgaagcacc gcatcctgga
     1261 agtgcttcac gggctggcca ccgaaagcaa ggaggtagac cactaccgcc aaaagctgtt
     1321 ggaaaaactg cctgctttat cagccaccga cttgcagcaa ctggcccata agatttacgc
     1381 caacatcctg cacgactaca gccgcttcag cgtcaccacc atcgattcat ttgtgcaacg
     1441 catcattcgc ggttttgcct gggagttggg aattgatggc ggcttcaaac tgcaactcaa
     1501 cacagagccg gtaaaggaag ccctggccga caaactatac ctgcgcctcg acgatgatat
     1561 ccatctgcaa cgatgggtag tagacatggc ccgtgagcgg ctgcaggaag gaaaacgctg
     1621 ggatttcagg gacgacatgc tgaatctttc cggcgaattg ttcaaagaaa ctttccgcaa
     1681 gtttgaaacg gccatcagtg catacagccc cgatgaactg aatcatcatt tcagcgagct
     1741 caataaaaaa gtgcatgcgg ccatcaaagg cctggaaaac aaatggaagg aggaaggcga
     1801 agccatgctt gcattgttgc agcaacatgg cctgcaggtg gaagactttg cgtatggcac
     1861 cagcggcttc gcgaattatt tcaacaaagc ggccggcggg gagattgtgg aaccaggcgc
     1921 aagagtattg gccgtaatag ctgatgccag caagatgctc agcaaaaaac ccgacgctga
     1981 cctgaaacaa aaagtagatg ccataagcct aacgctgcaa cggtcgctgc aaaaaatgac
     2041 tgattggtat cctgatgata tcaatgaata caacaccgcc aaggccataa aactcaacct
     2101 ggctgtactc cgcctcatgc acgtatttgc cgaggagttg ggcagctatc gcaaagaaaa
     2161 caatgcactg ctcatcagcg atacacactt cctgcttcgc aaattgaccg aggacagcag
     2221 cgcctctttc atttacgaaa aaaccgggca gcggtaccag cattacctca tcgatgagtt
     2281 ccaggacacc agcgcatttc agtgggacaa ttttgttccc ttgcttactg aagccttgag
     2341 ttacggtcaa tacaacctga ttgtaggcga cgtgaagcag gccatttacc gctggcgcaa
     2401 tggcgactgg cggctgctgc tgtacaaggt gcagcagcgc ctgaaagaat ttgctcccca
     2461 ggtaagcacc ttacaggaaa actaccgcag tacacaacag gtcattgcat tcaataacct
     2521 gttgtttcac ctggctccgc aattgctgca ggccgagctt tccgcatcca tgagcagtgc
     2581 cgacagacaa acgaaggctg ccctggaaaa cgcaggctac gctaccgttt tcaacgatgc
     2641 ttattccgac agctttcagc aaatgccagc ccgtgcccgc caagggggac aggtacacat
     2701 ccaatggctg gaggaaaacg aagacagcaa ttatgatgag caggtgcttc ccttgcttta
     2761 tgaaaaaata cagcagctgc ttgccgatgg tttttcgccc tccgacatgg cagtgctgac
     2821 ccgcaccaac aaagaagcaa agcaggtggt ggaatacctg gtcagtgcgc aacagcattc
     2881 cgggcaggcg tttcgcgttt tgtcgggtga ggcgctgatg ctggctggta accaggccat
     2941 tcaaat
//
LOCUS       DATIQF010000157         3149 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_124170,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000157 DATIQF010000000
VERSION     DATIQF010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124170"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..944
                     /locus_tag="VLL95_02525"
     CDS             <1..944
                     /locus_tag="VLL95_02525"
                     /inference="COORDINATES: protein motif:HMM:NF012640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HSR37765.1"
                     /translation="VQCNGETVSISGSNEDAAVRVFDDIAAQPATVLPIPAVQYKSLI
                     SKEDYLQIIHLLKEHIRRGDCYEINFCQEFLAENVTVDPASLYLKLSRLSPNPFSCYY
                     RQQHMHLACASPERYVKGNGRKVISQPIKGTSARDKQSAEGDLQQKNELQASAKDRTE
                     NVMVVDLVRNDLSKVCKRGTVKVEELFGIYTYPQVHQMISTIGGELGQEVSFTDLIAA
                     TFPMGSMTGAPKKRVLELINQYEPSARGIFSGSVGYIQPNGDFDFNVVIRSMVYNQQS
                     NQISFHVGSGITWYSQAENEYEECLWKAAAIEQVLQG"
     gene            complement(951..2021)
                     /locus_tag="VLL95_02530"
     CDS             complement(951..2021)
                     /locus_tag="VLL95_02530"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HSR37766.1"
                     /translation="MALLSVAGGQVYAGETDPRKKTAVKKDSTTSSLEDKGFRELFAD
                     NYPNPGNPYKAALNPQVMPFVEDYLKKHEKNLTAMKGWAGPYFNMMDGILSSYGLPKE
                     LKYLAVIESNLKSQALSWAGAVGPWQFMPETGRRMGLRISSRVDERTDYIKSTHAAAK
                     YLRELYDDLGDWLLVIAAYNGGPGKVQSAIRRSGSNSFWALQYYLPEESRNHVKKFIS
                     THYVMEGSGGQTTSTKAEWADHQLKMADQVLAMQTQINPQILGNTETTEVQGRYNSVV
                     VANALSLDITAFNSLNPGFDQMVATEKGYTLRLPKDKMEVFKANRFAILYQSITTTIQ
                     SATAPANYPSADAKAPAPRKTK"
     gene            complement(2075..>3149)
                     /locus_tag="VLL95_02535"
     CDS             complement(2075..>3149)
                     /locus_tag="VLL95_02535"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HSR37767.1"
                     /translation="EFAMGSTNENSAYGPVRNAADESRVPGGSSGGAAVAVQAGLCMI
                     SLGSDTGGSVRQPADFCGVVGLKPSYGRISRYGLIGYASSFDSIGILGLSVADVAAAY
                     NIIAGPDGRDSTVMLEKPQPVTEMAVPSGQLKFAWLEPTLSATSPDAEIQQSLRSTFA
                     RLEELGHTVKAVPFDSLDYIVPAYYVLTTAEASSNLGRFDGIRYGHAAADSGDDLTAF
                     YKRNRSEGFGAEVQRRIMLGTFVLSAGYYDAYFTKAQQVRQRIINETELIFKEFDAIL
                     MPVSPTTAPRLGEQLTDPVAMYLADIYTVFANLAGLPAMALPLYKHSNGLPYGLQVLT
                     NRGKEVPLHGISMYIERHCTAKN"
BASE COUNT          726 a          801 c          844 g          778 t
ORIGIN      
        1 tggtgcaatg caatggtgaa accgtttcca tcagcggctc caatgaagat gctgcggtgc
       61 gggtatttga cgatattgct gcgcaaccgg caacggtatt gcccattccg gcagtacagt
      121 acaaatcgtt gatcagcaag gaagattatt tgcagatcat tcatttgctc aaggagcaca
      181 ttcgtcgcgg cgattgttat gaaatcaatt tctgccagga gtttttggct gaaaatgtga
      241 cggtggatcc ggccagcctg tacctgaaac tcagcaggct ttcgcccaat ccattttcct
      301 gctattaccg ccagcaacac atgcacctgg cctgcgccag cccggagcga tatgtgaaag
      361 gcaatggtcg caaagtgatc agccagccca ttaaaggcac ttcggcaaga gacaagcaaa
      421 gcgccgaagg cgacctgcag caaaagaatg aactgcaagc cagtgccaaa gacaggaccg
      481 agaatgtaat ggtagttgac ctggtgcgga atgacctgtc gaaagtgtgc aagcggggca
      541 ctgtaaaggt tgaagaactg tttggcattt acacctatcc gcaggtgcat caaatgatct
      601 ccaccattgg cggcgaactc gggcaggagg tatcttttac cgatttgatt gccgctacat
      661 tccccatggg aagcatgaca ggcgctccca agaaaagggt gcttgaactc atcaatcaat
      721 acgagccatc cgcccggggc attttttcgg gatcggtagg gtatattcag cccaacggcg
      781 acttcgattt caacgtggtg atcaggagca tggtttacaa ccagcagtcc aatcagatat
      841 cattccatgt aggcagtggc attacctggt atagccaggc tgagaatgaa tacgaagaat
      901 gtttgtggaa agcggcagcg attgagcaag tgctgcaggg ataagaaaaa ttactttgtc
      961 ttcctggggg ctggtgcttt tgcatcagca gaaggatagt tggcaggggc ggtggcgctt
     1021 tggatggtag tagtgataga ctggtaaagg atcgcaaagc gattggcttt gaatacttcc
     1081 attttatcct tcggcaagcg aagggtgtat cctttttctg ttgccaccat ttgatcaaac
     1141 ccggggttga gcgaattgaa agcggtgatg tccagggaaa gggcattggc caccacaacc
     1201 gagttgtaac gcccttgcac ttctgtcgtt tcggtattgc ccagtatttg tggattgatc
     1261 tgagtttgca tggccagcac ctggtcagcc attttcaatt ggtggtcggc ccactccgct
     1321 ttggtgctgg tggtttgtcc gccactgcct tccattacat aatgggtgct gatgaatttc
     1381 tttacgtggt tgcggctttc ctcgggcagg tagtattgca gtgcccagaa gctgttgctg
     1441 ccacttctcc tgatggctga ctgcactttg ccggggcccc cgttataagc cgctattacc
     1501 agcaaccaat cacctaagtc atcatacaat tcccgcaggt atttggcggc ggcatgggtg
     1561 cttttgatgt agtctgtccg ctcgtctacc cggctgctga tgcgcaaacc catgcgacgg
     1621 ccggtttcgg gcataaactg ccagggacct accgcacctg cccaactcag ggcttgtgat
     1681 ttcaggttgc tttctatcac ggccaggtat ttcaattctt tgggaaggcc atagctggaa
     1741 aggatgccgt ccatcatgtt gaaatacgga cccgcccaac ccttcatggc tgtcagattt
     1801 ttttcatgct tcttcaggta gtcttccaca aatggcatca cctgaggatt caaagcggct
     1861 ttgtagggat tacccggatt ggggtaatta tccgcaaaca actcccggaa tcctttgtcc
     1921 tccaacgaag aagtggtgct gtcttttttg accgctgtct tttttctcgg atcggtttcg
     1981 ccggcataca cctgtccccc cgccacgctt aaaagcgcca cgcagaaaag tattttaata
     2041 tgcctgaatg ccagctccaa tggtcaaagt caatttagtt ttttgcagtg caatgccttt
     2101 caatatacat tgaaatgccg tgcaaaggta cttctttacc ccggttggtg agcacctgga
     2161 ggccataggg cagtccattg ctgtgtttgt acaagggcaa tgccatggcc ggcagaccgg
     2221 caaggttggc aaaaacggtg taaatatcgg ccaggtacat ggccaccgga tcggtgagct
     2281 gctcgccaag gcgaggggcg gttgtggggc tcactggcat caaaatggca tcaaactctt
     2341 tgaaaatcag ttctgtttca ttgatgatgc gttggcgtac ctgctgcgcc ttcgtgaaat
     2401 aggcatcgta atagccggcg ctcaatacaa atgtgcccag catgatccgc cgctgtactt
     2461 cggcgccaaa accttcgctg cggttgcgct tgtaaaaggc tgttaaatca tccccgctat
     2521 cggcagcggc atgaccatac cgaatgccat caaaccgtcc aaggttgctg ctggcttcgg
     2581 cagtggtaag tacataatag gccggcacaa tgtaatctag cgagtcaaat ggcactgctt
     2641 tcaccgtatg tcccaattct tccaaacggg caaaggtgga cctcagtgat tgctggattt
     2701 cggcatcggg gctggtggca gagagggtgg gctccagcca tgcaaatttt agttggccgg
     2761 agggaactgc catctccgtg accggctggg gcttttccag catgacggta ctatccctgc
     2821 catctggacc ggcaatgatg ttgtaggccg ctgcgacatc agccacgctg aggccaagga
     2881 tgccaatgct atcaaatgaa ctggcatagc cgatcaaccc gtaccggctg atgcggccat
     2941 agctgggttt gagacccacc acgccgcaga aatcggcagg ttggcgtacc gatcccccgg
     3001 tatcgctgcc caggctgatc atgcacaagc ctgcctgcac ggctaccgct gctccacctg
     3061 aagaaccgcc cggaaccctg ctttcatcgg cagcgttgcg caccgggcca taggctgaat
     3121 tttcattggt actgcccatg gcaaattcg
//
LOCUS       DATIQF010000158         3518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_215280,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000158 DATIQF010000000
VERSION     DATIQF010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3518
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215280"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..194
                     /locus_tag="VLL95_02540"
     CDS             <1..194
                     /locus_tag="VLL95_02540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37768.1"
                     /translation="EQITILIAHRLSTIMHADRIFVLEQGEIVETGTHESLIAEKGLY
                     YAMWRQQIGERKKQPAVLA"
     gene            231..869
                     /locus_tag="VLL95_02545"
     CDS             231..869
                     /locus_tag="VLL95_02545"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HSR37769.1"
                     /translation="MSSFATSIQKAFPEFEPELAETMEHEAVFRQIPAGTELMRPGQF
                     IRSTMLVLDGLIKVYREDGEGNEFFMYYLKPGDGCALSMTCMVGQEKSTIAAKTVQDT
                     EVIMVPLEKMDEWMGQYKSWYHFVVKTYRNRFEELLQTLDNVAFRNMDERLEFYLKRQ
                     QETQNSHIIPTTHQEIAQDLNSSREVISRLLKKMAERGKVKLHRYHIEIVKL"
     gene            946..1752
                     /locus_tag="VLL95_02550"
     CDS             946..1752
                     /locus_tag="VLL95_02550"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HSR37770.1"
                     /translation="MEIVGYLASLLIGISLGLIGGGGSILTVPVLVYLFGVDPVLATS
                     YSLFIVGATSLVGAFPKYRHGLVNMKTAIIFGIPSIAAVYATRKFLVPLIPQEVFTVG
                     SFTVTKPVLMMILFAVLMVFASYSMISDKNGNGEVDKKEGPQQFNYPMILLEGAVVGV
                     LTGLVGAGGGFLIIPALVLLSKLPMKQAVGTSLLIIAAKSLIGFTGDLGHYTMNWKLL
                     GIVTALAVGGIFLGSWLSHKIHGDKLKKAFGWFVLIMGIYIIVKELFLSA"
     gene            1842..3260
                     /locus_tag="VLL95_02555"
     CDS             1842..3260
                     /locus_tag="VLL95_02555"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HSR37771.1"
                     /translation="MKIEQIYTGCLAQGAYYIESEGEAVVIDPLCEVQPYLDRAAKDG
                     ATIKYVFETHFHADFVSGHLDLSKKTGAPIVYGPTAKPGFDALVATDGQEFKVGKITF
                     KVLHTPGHTMESTCYLLKDAQGKDVAMFTGDTLFIGDVGRPDLAQKVVADLTQDKLAG
                     HLFDSLRNKIMPLADDIIVYPAHGAGSACGKNMSKETTDTLGNQKKTNYALRSDMTKE
                     EFIKEVTTGLMPPPAYFPLNVMMNISGYDSIDEVMKRGQHALSPKAFETAANETGALL
                     LDTRAPQVFAKGFVPNSINIGIDGSFAPWVGAMIPDVKQQILLITEVGREEEVITRLA
                     RVGYDFTIGYLEGGFEAWQKAGMEVDHIESISAAELSDRASQGEVNILDVRKSSEYQS
                     EHVEAAVNAPLDYINDSMLLVDKNKKYYVHCAGGYRSMIFASILKARGYDNLVDVDGG
                     FKAIKDSGKFKVTDYVCPSTLL"
     gene            3326..>3518
                     /locus_tag="VLL95_02560"
     CDS             3326..>3518
                     /locus_tag="VLL95_02560"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HSR37772.1"
                     /translation="MMNDLLRKEPKTIIDVRETWEYEQEHFPGAVNIPLTLVPLRLSE
                     IRDMPKPILLYCRSGNRSGM"
BASE COUNT          967 a          823 c          880 g          848 t
ORIGIN      
        1 aggagcagat caccatcctg atagcccacc gcctgagcac catcatgcat gcagacagaa
       61 ttttcgtttt ggaacagggt gaaatagtgg aaaccggcac ccatgagtca ttgatcgccg
      121 aaaaaggctt gtattatgct atgtggcgtc agcaaattgg tgaaagaaaa aaacaacccg
      181 cggtacttgc gtaactttat catcatttat tgaaacatca acgattcaag atgtcatcct
      241 ttgcgacttc catacaaaaa gccttccctg aatttgaacc agaactggcg gaaaccatgg
      301 agcacgaggc cgtgtttcgg caaatacctg ccggcaccga actgatgcgc ccgggccagt
      361 tcattcgctc caccatgctg gtactcgatg gattgatcaa agtgtaccgt gaggacggag
      421 aaggcaatga attcttcatg tattacctga aacccggcga tggttgcgca ttgagcatga
      481 cctgcatggt aggacaggaa aaaagcacca ttgccgccaa gaccgttcag gatacggagg
      541 taataatggt gccgctggaa aagatggacg aatggatggg gcagtacaag agttggtacc
      601 actttgtggt aaagacctac cgcaatcgct ttgaagaact gctgcaaaca ctggacaatg
      661 ttgcctttcg caacatggat gaaagactgg agttttacct gaagcggcaa caggaaaccc
      721 aaaacagcca catcattcct acaacgcacc aggaaattgc gcaggatctc aattcaagca
      781 gggaagtaat ttcaagatta ttgaagaaaa tggcggaacg aggcaaagtg aaactgcacc
      841 gctaccatat tgaaattgtg aagctttagg ggtagtgatt aatatcaccg tgcactttta
      901 ccaggggcaa caatttcgca ccctacaaat cacaaagcac ggcaaatgga aatagttggt
      961 tatctcgctt ctttactcat aggaatttca ctgggattga ttggtggagg aggctccatc
     1021 ttaactgtac cggttttggt ttacttgttt ggtgtcgatc cggtgctggc aacctcctat
     1081 tcactgttca ttgtgggtgc caccagcctg gtaggtgcat ttcccaaata ccgtcatgga
     1141 ctggtgaaca tgaaaaccgc catcattttt ggcatcccat ccattgcggc agtatatgcc
     1201 acacgcaaat tcctggtccc tctcattccg caggaagtat ttaccgttgg ttcttttaca
     1261 gttacgaagc ctgttctcat gatgatcctt tttgctgtgc tgatggtttt tgcctcgtac
     1321 agcatgatca gcgataaaaa tggcaatggt gaggtggaca aaaaagaagg ccctcagcag
     1381 ttcaattatc ccatgatctt attggaaggc gccgtggtgg gtgtactcac tggcctggta
     1441 ggcgctggtg gcggcttcct catcattccg gcgctggtgc tgctgagcaa actgcccatg
     1501 aagcaagcgg ttggcacttc gctcctcata atcgcggcca agtcgttgat tggatttacc
     1561 ggcgatctcg gtcattatac catgaactgg aaactgctgg gtattgtaac tgccctggca
     1621 gtgggtggca tctttttggg cagttggctc agccataaaa ttcacggcga caaactgaaa
     1681 aaagcctttg gctggttcgt actcataatg ggcatttata ttatcgtgaa agagttgttt
     1741 ctctcggcct gatgagttat tttattgagt gatgctagtc acagtaaatg gccctttgat
     1801 acctgaattt tgctttactc cattttaaaa aaccataaag aatgaaaata gaacagatct
     1861 acaccggctg cctggcacaa ggtgcctact acattgaaag cgaaggcgaa gcagtggtca
     1921 ttgacccgct gtgtgaagta cagccctacc ttgacagggc tgccaaagac ggcgctacca
     1981 tcaagtatgt gttcgaaacg cacttccatg ccgacttcgt aagtggccac ctcgacctga
     2041 gcaaaaagac cggcgctccg attgtgtacg gaccgaccgc aaagcctgga ttcgatgctt
     2101 tggtagcaac cgatggacag gaatttaaag tgggcaaaat caccttcaaa gtgctgcata
     2161 cgcccggcca taccatggaa agcacctgct acctgctgaa agacgcacaa ggcaaggatg
     2221 tagccatgtt taccggcgac acgcttttta ttggtgatgt gggtcgtcct gaccttgccc
     2281 agaaagtggt ggcagatctt acccaggata aactggcagg acacctgttt gattcactgc
     2341 gcaacaagat catgcccctg gcagacgata ttattgttta ccctgcacac ggcgcaggca
     2401 gcgcttgtgg caagaacatg agtaaggaaa ccaccgatac gctgggcaac caaaagaaaa
     2461 ccaactatgc gttgcgttcc gatatgacta aagaagagtt catcaaggaa gtaaccacgg
     2521 gcttgatgcc tcctcccgcc tatttcccgc tgaacgtgat gatgaacatt tcgggctatg
     2581 acagcatcga cgaagtaatg aagcgtggtc agcacgcact aagtcctaaa gctttcgaaa
     2641 ctgcagccaa cgaaaccggt gctttgctgc tcgatacccg ggcaccgcag gtttttgcca
     2701 aaggttttgt gcccaattct atcaacatcg gtattgatgg cagctttgct ccctgggtgg
     2761 gcgccatgat ccctgatgtg aagcagcaaa tcctgctgat cactgaagta ggccgcgaag
     2821 aagaagtgat cacccgtttg gcaagggttg gctacgactt caccatcggc tatctcgaag
     2881 gtggtttcga agcctggcaa aaagccggca tggaagtaga tcacatcgaa tcgatcagtg
     2941 cggcagaatt gtccgatcgt gccagtcagg gcgaagtgaa tattcttgat gtgagaaaga
     3001 gcagcgagta ccagagtgaa cacgtggaag ccgctgtcaa cgcgccactg gattatatca
     3061 atgacagcat gctgctggta gataagaaca aaaaatacta tgtgcattgc gccggcggat
     3121 accgctccat gatctttgcc tccattctga aagcaagagg ttatgacaac ctggttgatg
     3181 tggacggcgg tttcaaagcg atcaaagact caggaaagtt caaggtgacc gactatgtgt
     3241 gtcccagcac tttgctgtaa acaaatacag gaaggttgct gaaaagcaac cttcttaatt
     3301 taaaactgaa aatttattac caaagatgat gaacgatttg ttgcgtaagg agccaaaaac
     3361 aattattgac gtacgtgaaa cctgggaata cgaacaggag catttcccgg gagcagtaaa
     3421 tattccactg acgctggtgc cattgcgcct gtctgaaatc cgcgacatgc ccaaacccat
     3481 tttgctgtat tgccgcagcg gcaatagaag cggcatgg
//
LOCUS       DATIQF010000159         1674 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_185013,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000159 DATIQF010000000
VERSION     DATIQF010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185013"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1674
                     /locus_tag="VLL95_02565"
     CDS             <1..>1674
                     /locus_tag="VLL95_02565"
                     /inference="COORDINATES: protein motif:HMM:TIGR00614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HSR37773.1"
                     /translation="GQESIIQSVLEGNDTLALLPTGGGKSVCYQLPALAMDGICLVIT
                     PLIALMKDQVRQLRKRNVAAMALHSGMNFFEVKKVLEIACEGHLKFLYLSPERLQTNL
                     FKEYLPGLNVNLVAVDEAHCISQWGYDFRPAYLQIASLRDEMPHVPMLALTASATSRV
                     QQDIMAQLHFSMARKLFRQSFARPNLSFISFELPQKVNKLIQVLQSVPGSALVYCRNR
                     KRTKEIAALLQLQGISATHYHAGLPSEERNQKQDNWLHNKVRVMVCTNAFGMGIDKPD
                     VRSVIHMDVPDSVEAYYQEAGRAGRDGKRAYAVLLYSKEEISLLRQLPNQKFLPSNEI
                     REIYQQLCDYLQVPAGAGEQQYFNFDLGKFCEAFKKEAVKVMHALSALQSAGYMSFAE
                     QVFIPSKVQVVASREYLEQLEQDKPQLEPLIKLLLRTYEGILDYPVSIREKSLAGFLK
                     LSEAEIGQQLKLLTVYQAIEYEPRKDTPQLYFLYNRVPAGQLMLNEKEYAERKKHYEA
                     QVAATVQYAQLQALTCRSSFIRLYFGDDNVEDCGICDHCLAKKQSPSSS"
BASE COUNT          426 a          403 c          468 g          377 t
ORIGIN      
        1 ccgggcagga atccattatt cagtctgtgc tggagggcaa cgatacgctg gccctgcttc
       61 ctaccggagg cggcaagtcg gtttgctacc agctgcctgc attggccatg gatggcattt
      121 gcctcgtgat cacgccgctc attgctttga tgaaagacca ggtgcgacag ttgcgcaagc
      181 gcaacgtggc agccatggcg ttgcacagcg gcatgaattt tttcgaggta aaaaaagtgc
      241 tggagattgc ctgcgaagga cacctcaagt ttctgtacct gtcgcctgaa agattgcaaa
      301 ccaatttgtt caaagaatac ctgccgggtt taaatgtcaa cctcgttgct gtggatgaag
      361 cgcattgtat ttcgcagtgg ggctatgact tcaggcctgc ctatttgcag attgcttcgt
      421 tgcgggatga aatgccccac gtgcccatgc tggcgctcac ggcttcggcc accagccggg
      481 tgcagcagga catcatggcg cagctgcatt tttccatggc ccgcaaattg tttcggcaat
      541 catttgcccg gcccaatctt tccttcatct catttgaact gccgcagaaa gtgaacaagc
      601 tgatacaagt gctgcagagt gtgcccggtt cggcactggt gtattgtcgc aatcgcaagc
      661 ggaccaaaga gatagcggca ctcctgcaac tacagggcat cagcgctacg cattaccatg
      721 cgggtttacc atctgaagag cgaaatcaaa aacaggacaa ctggctgcac aacaaagtgc
      781 gggtaatggt atgcaccaac gcatttggca tgggtatcga caagccggat gtgcgcagcg
      841 taatacacat ggatgtgccg gatagtgtgg aagcctacta ccaggaggcg ggtcgtgcgg
      901 gccgtgatgg caagagagcg tatgcggtat tgttgtacag caaagaagag atcagtttgc
      961 tgcggcaatt gccgaaccag aagtttctgc cctccaatga gatcagggag atctaccagc
     1021 agctttgcga ttacctgcag gtgccggcag gagcaggaga gcagcagtat ttcaattttg
     1081 atttgggcaa gttttgcgaa gcgttcaaaa aagaggctgt gaaagtgatg catgccttga
     1141 gcgccttgca aagtgccggg tacatgtcgt ttgccgaaca ggtcttcatt ccatcgaaag
     1201 tacaggtggt ggcgagccgg gaatacctgg agcaactgga gcaggacaag ccccaactgg
     1261 agccgttgat caagttgttg ttgcgcactt atgaaggcat tctcgattat ccagtaagca
     1321 tccgcgaaaa atcgctggct ggttttttaa aattgagcga agcggaaata gggcaacagc
     1381 tgaagctgct taccgtgtac caggccattg aatacgaacc ccgtaaagac acaccacagc
     1441 tttatttcct gtacaaccgg gtgcccgccg gccagctgat gctgaatgaa aaggaatacg
     1501 cagaaaggaa aaagcattac gaggcacagg tggctgcaac ggtacaatac gcacaattgc
     1561 aggcgctaac ttgccgaagc tctttcatac gactgtattt cggagatgat aacgtggagg
     1621 attgtggaat atgtgatcac tgcctggcca aaaagcagtc gccatccagc agca
//
LOCUS       DATIQF010000160         4926 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_48204, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000160 DATIQF010000000
VERSION     DATIQF010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4926
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48204"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>4926
                     /locus_tag="VLL95_02570"
     CDS             <1..>4926
                     /locus_tag="VLL95_02570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37774.1"
                     /translation="PPFEAPTTKDELFMQMRKGAEEGKSLHVVEMGGKSLVKHYQYMR
                     TLPVVGEILDSIIEAGHPLPTFQIMHQAYFSKGFLLFITYEPVPAVHETFKRFANVFD
                     QIYTRFLDLQRAEAQAREAQVEAALERVRSRSMAMHKSEELADLSLELVKQVQALGVA
                     TWFCAFNIYDDDANSSIEWGSNGQGVFSKYRTPRDGVFLQYYKAGKRGETLHVHEIPE
                     DKCAAHYEYLCSLPGVGDQLLQMKAAGIPFPKYQIDHVAFFKQGYLLFITYEPVPEAH
                     DIFKRFARVFEQSFTRFLDLKNAEAQAREAEIQLALERVRARSLAMHHTDELQEVVNV
                     VAQQLLQMGIDMDGGIFIAINDEVNYDLPFWAAAGATDYVQKVTIPFFNQPIYTQLCN
                     AIKKRDSFITEYYTKAEKNEFLKHMFRHHPWNQNSAERKAELLAREGGYARSVAVNQH
                     TTIGITNHHGKKFSDADNAILRRFGSVLEQSYTRFLDLQKAEEQAREAKIEAALERVR
                     SRSLAMHHSSELSAVVDTLLSEFTNLEFALTFCIINLIDEQDRSNTVWAANPETGKAP
                     ESYYMKFEDYPFHHAMWDAWKAQKKHFIYTIEGKEKKIYDEYLYTKTEFRRFPKHVQE
                     ANKALKRYVAGFTFFKYSGLQTVSENHISNEDLNILERFGRVFEQCYTRFLDLQKAEA
                     QAREAQIEASLEKVRSRSMAMQQPEELVEVAELLRKEMGQLGVEELETSSIYIVEKET
                     KQAECWYAIKDVREEDTRLVSDEMTLLLTDTWVGKQMWKFYQSCEDRTSILMKGERRR
                     EWINYCAQHSRVLQGYYGDEIPDRTYHLVKFNGGYIGAAAPGDISAESWDLLKRVSTV
                     FSLAYTRFKDLQDAAARAREAQIELALERVRSRSMAMHKSEELKEVIRLVLDQFIHLN
                     INAEHAGFYIDYKVHDDMHIWLADPNIEPYFAVLPYFDTPTWNSFLESKAKGIAFHTD
                     LLDFKEKNKFYKSLFKLFEIPEEAKRFYLKCKGLAVSTVLLDNVGLYIENFQGIPYSE
                     EENKILMRFGKVFQQTYTRFLDLQKAEAQAREAEIQLALERVRARAMAMQKSDELAEA
                     ATILFQQVKALGIETYTSGFTIWDNDEKDLVSWMCNADGSVNPPFRMPALQNEWHRQQ
                     YESWKRGDEFIVHDFAGEEMQEHYAYLRSFPLLDEAFKKSEAAGVPTPKRQVHHAFNF
                     TQGNLLFITLQPVPEAYPIFKRFAATFEQTYTRFLDLQKAEAQAWEAQVEAALERVRA
                     KAMAMHTSQELSDVVHELRMQMGRLGQKDLDTCVIHLHDESPDFISAWAAMKTPESEE
                     GILEASAQVPKRGLLIIEEALQAYAANKGEYVIVNEGEKISQWMTFLQQVSPAAFEKL
                     QESIDHLPQKEVRSYWSFADFSGGALLIVTTDPPIEETRQLLRRFSNVFGLAYRRFSD
                     IKHAEAQAREAQIEAALERVRSRTMGMQKSTELNEVAFVLFKQIRLLGGKLWGTGFAL
                     CNAEDGHDEFWFANEMGVMPPVSIPNTEDDVHVAMLQCWKEHKDYLSSQKEGEALAAH
                     YRYLYSLPQMKAFFDPMLEAGFEFPNWQQWHAAYFSKGYLLIITTEPYAEPDIFIRFA
                     KVFDQTYTRFLDLQKAEAQARESQIQLSLERV"
BASE COUNT         1427 a         1091 c         1256 g         1152 t
ORIGIN      
        1 ccaccgttcg aagcacctac taccaaggat gaattattca tgcagatgcg caaaggagcc
       61 gaagagggta aatcattgca tgtagtggaa atgggtggca agagtttggt gaagcattat
      121 caatacatgc gaacactgcc ggtggtgggt gaaattctgg attccatcat agaggcaggc
      181 catccgctac ccacttttca aatcatgcac caggcctatt tctcaaaagg gttcttgttg
      241 ttcattacct atgagccggt gcctgcggta catgagacat tcaaacgctt tgccaatgta
      301 ttcgatcaaa tctatacccg tttcctggat cttcaaagag ccgaagcaca agcaagagaa
      361 gcacaggtag aagcagcgct ggaaagagtg cgcagccggt cgatggccat gcacaagagt
      421 gaggaactgg cagacctttc tcttgaattg gtaaagcagg tccaggcatt gggagtggct
      481 acctggtttt gtgctttcaa tatttacgat gacgatgcca acagttccat tgaatggggt
      541 agcaatgggc aaggggtttt ttcaaaatac agaacaccac gggatggtgt atttcttcaa
      601 tattacaaag cgggcaagcg gggtgaaacc ttacacgttc atgagattcc tgaagacaaa
      661 tgcgcagcgc actatgaata cctgtgcagc ctgcccggtg tgggcgacca gttgctgcag
      721 atgaaagctg cgggcatccc ctttccgaaa taccagatag atcatgtggc ttttttcaaa
      781 caaggctacc tgcttttcat tacctatgag ccggttcctg aagctcatga tattttcaag
      841 cgatttgccc gggtgtttga acaatccttt acccgtttcc tcgacctgaa aaatgcggaa
      901 gcacaagcca gggaagcaga aatacaactg gcactggaaa gggtgcgtgc aagaagcctt
      961 gccatgcacc ataccgatga actgcaggaa gtggtgaatg tggtggcgca gcaactgctg
     1021 caaatgggca ttgatatgga cggtggtatt ttcattgcca tcaacgatga agtgaactat
     1081 gatcttcctt tctgggccgc tgccggcgct acagattatg tgcagaaagt gaccattccg
     1141 ttcttcaacc aacccattta cacgcagctg tgcaatgcca tcaaaaagcg ggattccttc
     1201 attaccgaat actatacaaa agcggagaag aatgaatttt tgaagcatat gttccggcat
     1261 catccgtgga accagaacag tgcagagcgg aaagcggaac tactggccag ggaagggggc
     1321 tatgcgaggt cggtggcagt gaaccagcac acgacgattg gcatcaccaa ccatcatggc
     1381 aaaaaattct ctgatgctga taatgccatt ctccggcgtt ttggatcggt gctcgaacaa
     1441 tcctacaccc gattcctcga tttgcaaaaa gccgaagaac aggcaagaga agcaaagatt
     1501 gaagcagcat tggagagagt aagatcccgc agcctggcga tgcatcattc ctccgagttg
     1561 tccgctgtgg tggatacgct cctcagtgag ttcaccaatc ttgaatttgc acttacgttt
     1621 tgtatcatca accttattga tgagcaagac aggagcaata cggtttgggc cgctaaccct
     1681 gaaacgggaa aggccccaga gtcgtactac atgaaatttg aagattatcc ctttcatcac
     1741 gccatgtggg atgcatggaa agcacagaag aagcatttca tctataccat cgaagggaaa
     1801 gagaagaaaa tctacgatga atacctttat accaagactg aattccggcg attccctaaa
     1861 catgtgcagg aagcgaacaa agccctcaaa aggtatgtag cgggcttcac atttttcaag
     1921 tacagcgggc tccaaacagt cagtgaaaat cacattagca acgaagacct gaatatcctc
     1981 gaacgttttg gcagggtttt cgaacagtgc tatacccgat tcctcgatct ccaaaaggcg
     2041 gaagcgcagg caagggaagc gcaaatagaa gcttccctgg agaaagtgcg ttcccgctcc
     2101 atggccatgc aacaaccgga agagttggtg gaggtagcgg aattgctgcg caaggaaatg
     2161 gggcagttgg gagtagaaga attggagacc agttccattt acattgttga aaaggaaacc
     2221 aagcaggcag aatgctggta tgccataaag gatgtgagag aggaggatac ccggctggta
     2281 agcgatgaaa tgaccctgtt attgaccgat acctgggtgg gtaagcaaat gtggaagttc
     2341 taccagtctt gtgaggaccg cacatcgata ctcatgaaag gcgaaaggag aagggaatgg
     2401 atcaactatt gtgcgcagca ctccagagta ttacaagggt attatggtga tgaaatacct
     2461 gatcgcacct atcacctggt caaattcaac ggaggatata ttggagcggc ggcgcccggc
     2521 gatatctcgg cagaaagctg ggacctgctg aaaagagtgt ccaccgtttt ttcgttggcg
     2581 tatacaaggt ttaaagatct gcaggatgcg gcagcaaggg ccagggaagc acaaattgaa
     2641 ttggcgctgg aaagggtgcg cagccgcagc atggctatgc ataaaagtga ggaactcaaa
     2701 gaagtgatac ggctggtgct tgaccaattc attcacttga acataaatgc agaacatgcc
     2761 ggtttttaca tcgactataa agtgcatgat gacatgcaca tctggttggc tgacccgaac
     2821 atagaaccct actttgctgt acttccctat tttgacacac ctacctggaa tagttttctg
     2881 gaatcgaaag caaagggcat cgcctttcac acagacctgc tggactttaa agaaaagaac
     2941 aagttctata aatcactttt caaattattc gagatacccg aagaagcgaa gcggttttat
     3001 ttgaaatgca aaggtcttgc tgtgtccact gttttgttgg acaacgttgg gttatacatc
     3061 gaaaatttcc agggcattcc ttattccgaa gaagagaaca agatattgat gcgcttcgga
     3121 aaagtattcc agcagaccta cacccgcttc cttgatctgc agaaagcaga agcacaggcc
     3181 agagaagccg aaatccaact ggcattagaa agggtgcgtg cccgtgctat ggccatgcaa
     3241 aaaagtgatg agctggcgga agcggctacc attctttttc agcaggtaaa ggcgctggga
     3301 atagaaacat acaccagtgg atttacgata tgggataacg atgaaaaaga ccttgtatca
     3361 tggatgtgca atgcagacgg atcggtgaac ccaccgttca gaatgcctgc cctgcaaaac
     3421 gaatggcaca ggcagcaata tgaatcatgg aagcggggcg atgaatttat tgtacatgat
     3481 tttgcaggag aagaaatgca agaacactat gcctacctgc gatcgtttcc tttattggat
     3541 gaagctttta aaaagtcgga ggctgcaggg gtgccaacgc caaagcgaca ggtgcatcat
     3601 gccttcaact tcacacaggg caatctgctt ttcatcaccc tgcaaccggt acctgaagcg
     3661 taccctatat tcaagcgttt tgctgccact ttcgaacaaa cctatacccg ctttctcgac
     3721 cttcaaaagg cagaagcaca ggcatgggaa gcacaggttg aagcggcgct ggagcgggtg
     3781 cgagcaaaag ccatggccat gcatacatcg caagagctta gcgatgtggt tcatgaattg
     3841 cgaatgcaaa tgggcaggtt aggacaaaaa gatctggata cctgcgtgat ccatttgcac
     3901 gatgagtctc ccgatttcat ttcggcatgg gctgccatga aaacacctga aagtgaggaa
     3961 ggtatcctgg aagcctcagc acaggttcct aaaaggggct tattgattat tgaggaagca
     4021 ttgcaggcat atgctgccaa taagggtgaa tatgtgattg taaatgaagg cgagaaaatc
     4081 agccagtgga tgacattcct acagcaagtg tcgcctgcag catttgaaaa acttcaggaa
     4141 tctatagacc acttgccaca aaaggaagta cgttcctact ggtcgtttgc cgatttttca
     4201 ggcggggcat tgctcatcgt gactacagat cctcctattg aagaaacccg acaattgctg
     4261 cgacgttttt ccaacgtgtt tggccttgca tatcgaagat tttcggacat taaacatgct
     4321 gaggcgcagg caagggaagc acagattgaa gcagcgctgg agcgggtacg aagccgtacc
     4381 atgggtatgc aaaaaagtac ggaactaaat gaagtagcct ttgtgttgtt taagcaaata
     4441 agattattgg gcggcaagct gtggggaacc ggctttgcac tttgtaatgc agaggatggc
     4501 catgatgaat tctggtttgc caatgaaatg ggcgtcatgc ccccggtgag tatacccaat
     4561 accgaagacg atgtacatgt tgccatgctg cagtgctgga aggaacataa ggactatctc
     4621 tcatcacaga aagaagggga agcgctggca gcacattacc ggtacctcta ttcgctgccc
     4681 caaatgaagg ccttcttcga tccaatgttg gaggccggtt tcgaatttcc caactggcaa
     4741 caatggcacg ctgcctattt ttcaaaaggc tacctgctca tcattaccac agaaccctat
     4801 gctgagcctg atattttcat acgctttgcc aaagtatttg atcagaccta tactcgtttc
     4861 cttgatcttc aaaaagctga agcgcaggca agagagtctc aaatccagtt atccctcgag
     4921 agagta
//
LOCUS       DATIQF010000161         2145 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_139468,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000161 DATIQF010000000
VERSION     DATIQF010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139468"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..756)
                     /locus_tag="VLL95_02575"
     CDS             complement(<1..756)
                     /locus_tag="VLL95_02575"
                     /inference="COORDINATES: protein motif:HMM:TIGR01777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HSR37775.1"
                     /translation="MNSKTILITGGTGLVGKALSQRLLQAGHSVIVLTRNPGKQKPSH
                     PQLTYAAWDVNAGTIDGNAISQAHAIVHLAGAGVVDKPWTQAYKEEIVSSRVKSSELI
                     IKALQQYPNQVEVVVSASAIGWYGADKAGHGPFVETDPPNRAFLGETCRLWEASILPV
                     QQLGKRLVICRIGIVLANEGGALPEFKKSLAFRVAGILGSGEQVVSWIHINDLCSIFM
                     KGITDVNMQGVYNAVAPHPVTNRQLNLSLAKAMY"
     gene            complement(879..>2145)
                     /locus_tag="VLL95_02580"
     CDS             complement(879..>2145)
                     /locus_tag="VLL95_02580"
                     /inference="COORDINATES: protein motif:HMM:NF023746.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37776.1"
                     /translation="GENRALKAIESATNSPLLNDNDIRGAKWILLNITSSEGDHEYTM
                     EEVEIIQNYVREQTGETTDVILGMGYDDTLGEQIGITIIATGFHHKDPFEKAPARKPE
                     VKQVEEPAIFMTLGVEGEERKMEAPVFTAPEPVPAPQPEPVAIVEETVVVEEETFTLE
                     LPVMEEAAPAEPEALYEPPVMDVLKTVETESAPIIFELSVSEEPFFQEVAEPVATHTT
                     EVINETPAEEEAEAPSVPGFLSKPAQIYFEPAPSAEAEEVTAEKEVKEEESLMPVMQE
                     MTEELPAAKEEWKPTLTEEWNEEDAAVAGISLSVSDHVPAPTASEKQMDMFQQPDGMQ
                     DLSEDEEQKRRAKERINRLRNLSYNPHNLDNNSEFEQVPAYLRRDMNLHNSIANVEDF
                     YSRAQVKSDDNNQGHISTLNNFLHGEKPD"
BASE COUNT          422 a          582 c          556 g          585 t
ORIGIN      
        1 atacatggct ttcgccaggg aaaggttgag ttggcggttc gtcacggggt gaggcgctac
       61 ggcattgtac accccctgca tattcacatc cgttattccc ttcatgaaaa tgctgcacag
      121 gtcgttgatg tgtatccagc tcaccacctg ctccccgctg cccagtatgc cggctacgcg
      181 gaatgccagc gactttttga attcgggcaa tgcaccgcct tcgttggcca gcacgatgcc
      241 aatgcggcaa atgaccagcc gtttgcccag ctgctgtacc ggcaatatgg aggcttccca
      301 taagcggcag gtttcgccca gaaaggcacg gttgggcgga tcggtttcca caaaaggtcc
      361 atgccctgct ttgtcggcac cataccagcc aatggccgaa gcactcacca ctacctccac
      421 ttggttgggg tattgctgca gggctttgat gatgagttcg ctgctcttca cccggctcga
      481 tacgatttcc tctttgtagg cttgcgtcca gggtttgtcg accacgccgg cacctgccag
      541 gtgcacaatg gcatgggctt gggaaatggc gtttccatca atggttccag cgtttacatc
      601 ccaagcagca tacgtcaact gcggatgcga gggcttttgt tttcctggat tcctggtgag
      661 cacaatgacg gagtgacccg cctgcagcaa ccgctggctc agtgctttgc ctaccaatcc
      721 agtgccgcca gtgatgagta tagtcttgct gttcataatg cttgatgaat gtacaacaac
      781 ctgtcgccac tgctgttcga aatggccaga aagaagtagg ccccgctaaa aatagcaggg
      841 ccgttacttc aactaaaaac acaatctaag caaggttatc agtcaggctt ttcgccatgc
      901 aggaagttgt tgagggtgct gatatgtccc tggttgttgt cgtcgctctt tacctgggca
      961 cggctgtaga agtcttctac attggcaatg ctgttgtgca ggttcatatc gcgacgcagg
     1021 taagcaggca cctgttcaaa ctcgctgttg ttgtcgaggt tgtgcgggtt gtagctcagg
     1081 ttgcgcaggc ggttgatgcg ctccttggca cgacgcttct gctcctcgtc ttcactcagg
     1141 tcctgcatgc catccggttg ctggaacata tccatttgct tttctgaagc ggtaggcgca
     1201 ggcacatggt ctgacaccga aaggctgatg ccggctacgg ctgcatcttc ttcgttccac
     1261 tcttcggtca acgttggctt ccactcttct ttggcggcag gcagttcttc agtcatttcc
     1321 tgcatcaccg gcatgaggct ttcttcttcc tttacttcct tttcagcagt tacttcttct
     1381 gcttctgcgg acggagcagg ttcaaaatag atttgcgcag gtttactgag aaaacccggc
     1441 accgaaggtg cttcggcctc ctcctccgct ggggtttcat tgattacctc tgtagtatgg
     1501 gtagcaacag gttcagccac ttcctgaaag aatggttctt ctgaaacact caattcaaaa
     1561 atgatcggcg ccgattctgt ttctaccgtt ttcagtacat ccatcaccgg gggttcgtac
     1621 aatgcctcgg gttcagcagg agcggcttct tccatcaccg gcaattccaa tgtgaaggtt
     1681 tcctcttcca ccaccactgt ttcttccacg atggctaccg gctcgggctg aggagcgggc
     1741 acgggttccg gtgctgtaaa cacgggagct tccattttcc tttcctctcc ttctacaccc
     1801 agcgtcatga agatggccgg ctcttccacc tgctttactt caggcttgcg ggcaggggcc
     1861 ttttcgaagg gatctttgtg atggaaacca gtggctatga tggtgatacc gatttgctcg
     1921 cccagtgtat cgtcgtatcc catacccagg atcacatcag tggtttcgcc ggtttgttcg
     1981 cgaacataat tctgaatgat ctccacttct tccatggtgt attcatggtc accttcggaa
     2041 gacgtaatgt tgagcagtat ccacttggca ccacggatat cgttgtcgtt gagcagcgga
     2101 gagttggtag cagactcaat ggctttgagg gcacggtttt caccg
//
LOCUS       DATIQF010000162         1632 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_2510, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000162 DATIQF010000000
VERSION     DATIQF010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2510"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..624
                     /locus_tag="VLL95_02585"
     CDS             <1..624
                     /locus_tag="VLL95_02585"
                     /inference="COORDINATES: protein motif:HMM:NF018530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37777.1"
                     /translation="RMVGPKSQLKEAESILGNSRKRLEEPELASIFVGIILGMLLGSI
                     PLAIPGIPVPIKLGMAAGPLIVAILISRYGGLSRLHSYMNQSAAWFMRDFGIALFFAA
                     VGIQAGKTLYQNFMENNGWWWLLYGIAITSIPVIFIALVARLVFKINFLQIAGMIGGT
                     YTSPPTLAFCNGYFEGDVPAQAYATVYPLVTISRILAAQLFILLFVR"
     gene            692..>1632
                     /locus_tag="VLL95_02590"
     CDS             692..>1632
                     /locus_tag="VLL95_02590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37778.1"
                     /translation="MRISAFLLTAGLVCCQMASAQDASQLHETGVRYLQQSDYGNAII
                     VLKKAMELAPTDKEIVNDLGLAYFMAGQYKSGYDLLAPFAETKYCDDRTYVIAALCQR
                     GGKNIKEAETVYQIGLQNFPKSGALYCDYGEFLQITRGGTDECIKLWEKGILSDPVYP
                     GNYYNASRYYGQLDNNLWSVIYGEVFVNMESYSNRTVEIKNQLYESYKRLFAYELENI
                     GKLKGGFEKAVATTLKKQESLAINGINPETLTAIRTRFVLDWFGKNDKQFPFRLFEHQ
                     QQLLEEGIFDAYNQWLFGSVANLNAFQNWTKTHPDEYV"
BASE COUNT          405 a          417 c          411 g          399 t
ORIGIN      
        1 cgcatggtag gccccaagag ccaactgaag gaagccgaat ccattttagg caacagccgc
       61 aagcgactgg aagagcctga actggcttcc atttttgtgg gcatcatact gggcatgcta
      121 ttgggttcca ttccgctggc catcccgggc ataccggtgc ccatcaaatt gggcatggct
      181 gccggccccc tgatcgtggc cattctcatc agccgctatg gtggtttgag caggcttcac
      241 tcgtacatga accaaagcgc tgcctggttc atgcgtgact ttggcatcgc cctgtttttt
      301 gctgccgtgg gcatacaggc cggtaaaaca ctataccaga atttcatgga aaacaacggg
      361 tggtggtggc ttttgtatgg cattgccatt acatccatcc cggtcatctt catagcactg
      421 gtggcccgcc tcgttttcaa gatcaatttc ctgcagattg ccggcatgat tggcggtacc
      481 tacaccagcc cgcccacact ggctttttgc aacggctatt ttgaaggcga tgtacccgcg
      541 caggcttatg ccaccgtgta cccgttggtg accatttccc ggatactcgc tgcgcagttg
      601 ttcattctac tgtttgtccg gtaaagggca ttcgccagta gtgtcttgtt aattaaacat
      661 gccattaccc gcaggtacat aaatttgctg catgcgtatt tcagcattct tattgaccgc
      721 agggctggtg tgctgccaaa tggccagcgc acaggatgcc agccaactgc acgaaacagg
      781 ggttcgttac ctgcaacaaa gcgattatgg caatgccatc attgtactga aaaaggcaat
      841 ggaactggcc cctaccgata aagaaatcgt gaatgacctg ggactggcgt atttcatggc
      901 cggccaatac aaatcagggt atgatctgct ggcaccgttt gccgaaacca agtattgcga
      961 cgaccgcact tacgtgattg ctgcgctttg ccagcggggt ggcaagaaca tcaaggaagc
     1021 agaaaccgtt taccagatcg ggctgcagaa ttttcccaaa agcggtgcgt tgtactgcga
     1081 ctacggcgag tttctccaga taacccgggg tggcaccgat gagtgcatta aactttggga
     1141 aaaggggatc ctgtctgatc cggtctatcc cggcaattat tacaatgctt cgcgttatta
     1201 cggccagctt gacaacaacc tgtggtcggt gatctatggc gaagtgttcg tgaacatgga
     1261 aagctattcc aaccgcaccg tggagatcaa gaatcaattg tacgaaagct acaagcgcct
     1321 gtttgcgtat gagctggaaa acatcggtaa gctgaagggt ggctttgaaa aagcagtagc
     1381 cactaccttg aaaaaacaag agtcgctggc catcaacggc atcaacccgg aaacgctcac
     1441 tgccatcaga acacgtttcg ttctggattg gtttggcaag aacgacaagc aattcccttt
     1501 ccgtcttttc gaacaccaac agcaattatt ggaagaaggc atttttgatg cctacaacca
     1561 atggctcttt ggcagtgtag ccaacctgaa tgcttttcaa aactggacca aaacacaccc
     1621 ggatgaatat gt
//
LOCUS       DATIQF010000163         2410 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_2516, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000163 DATIQF010000000
VERSION     DATIQF010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2410
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2516"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1178)
                     /locus_tag="VLL95_02595"
     CDS             complement(<1..1178)
                     /locus_tag="VLL95_02595"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HSR37779.1"
                     /translation="MKIAIAQQNYHVGNFAANTQKIIDAINEAKALGADIVLFSEQSV
                     CGYPARDFLEFDDFIRKSKDAVEKIAAHCTDIAALIGAPERNPHLKGKDLFNSAFFLY
                     EGKVQQAIHKTLLPTYDVFDENRYFEPAYEWDIVHFKGKKLAVTICEDIWNLGDNPLY
                     RICPMDELMKHSPDVMLNLSASPFDYTHDEDRKATIKANVTKYKLPMFYCNAVGSQTE
                     IVFDGASLVFDKGANLCGQLPMFEESLQVFELNDDGSINAPILEPASRVPDKELTPHA
                     LEAELNMAQIHDAIILGIRDYFGKMGFKQAIVASSGGIDSAVTLALAVRALGAENVRA
                     VLLPSQFSTSHSVDDAVQLSKNLNNPYDIIPIKNIFDQFVTELKPVFGDLPFNVAEEN
                     "
     gene            1321..>2410
                     /locus_tag="VLL95_02600"
     CDS             1321..>2410
                     /locus_tag="VLL95_02600"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HSR37780.1"
                     /translation="MQSPLHAFLHWEQQMPDKIILRQPFEDGMRTWTWQQAGDEARRM
                     ARGLQQLGLQKGDRVALLSKNCAHWIMADIAIMMGGFVSVPLYATITAETIQQILDHS
                     GSKAIIIGKLDHFATQAAGIPERVADIHVEAYGNRGTYSWEAWLQEHMPLAQPLLPTD
                     DEELLTVMYTSGTTGNPKGVMHTVGTFRNTTNLLDVIGIQKHPVIFSFLPLSHIAERI
                     GIEITGIMLCGSFSFLLSIESFPQDLQATQPTHFFAVPRLWQKFREKINEKLPDSKLN
                     TLLKIPILSSIVKKKIRKGLGLSNATRIFVGAAPISVELLQWYKKLDIEILQAYAMTE
                     DCIYGHFNLPGANKLGTVGRPLPGVQSRI"
BASE COUNT          547 a          615 c          670 g          578 t
ORIGIN      
        1 atgttttcct ccgccacgtt gaagggcagg tcgccaaaca cgggtttcaa ttcggtgacg
       61 aactggtcga agatgttttt gatgggaatg atgtcgtagg gattgttgag attcttactc
      121 agctgcacgg catcatccac gctatggctg gtgctgaact gcgaaggcag cagaacggcc
      181 cgcacatttt cggcgcctaa tgcccgcacg gccagtgcca gcgttacggc actgtcgata
      241 ccaccgctgc tggccacaat ggcttgtttg aaacccatct taccaaagta gtcgcggatg
      301 ccgagaatga tggcatcgtg aatttgtgcc atgttcaatt cggcttccag ggcatgcggt
      361 gtcagttctt tatcgggtac ccggctggcg ggttcgagga taggggcgtt gatgctgccg
      421 tcatcgttca attcaaacac ttgtaagctt tcttcaaaca tgggcagctg tccgcagagg
      481 ttggccccct tgtcaaacac caggctggcg ccgtcgaata cgatttcggt ttggctgccc
      541 acggcgttgc agtaaaacat gggcagcttg tacttcgtca cattggcctt gatggtggcc
      601 ttgcggtctt catcatgcgt atagtcgaat ggcgaagcgc tgaggttgag catcacatcg
      661 gggctgtgtt tcatcagctc gtccataggg cagatgcggt acagcgggtt gtcgccgagg
      721 ttccagatgt cttcgcaaat ggtgacggcc agtttcttgc ccttgaagtg cacgatgtcc
      781 cattcataag ccggttcgaa gtagcggttc tcatcaaaca catcgtaggt gggcagcagg
      841 gttttgtgga tggcttgttg caccttgcct tcgtacaaaa agaaagcgct gttgaaaagg
      901 tccttgccct tgaggtgggg gttgcgttcg ggagcaccaa tgagggcggc aatgtcggtg
      961 cagtgggcgg cgatcttctc cacggcatcc ttgcttttgc gaatgaaatc gtcgaactcc
     1021 aggaagtcgc gggccgggta gccgcacaca ctttgctcgc tgaacagtac gatgtcggcg
     1081 ccgagggctt ttgcttcgtt gatggcgtcg atgatctttt gggtgttggc ggcaaagttg
     1141 cctacgtggt agttctgctg ggcaatggcg attttcatat tccggtgctt gctataactt
     1201 ctggtaataa tctgcggggg taaaagtaat acggcatctc ggattagtag ttttgataat
     1261 gaaatgatgt gctaaacttg cgcttctgca tatatttagc ctgttcaata aatcaacgat
     1321 atgcaatcgc cattacatgc cttcctgcat tgggagcaac aaatgcccga caaaatcatt
     1381 ttgcgccagc cttttgaaga cggcatgcgc acctggacct ggcagcaagc cggtgacgaa
     1441 gcccgccgca tggccagggg actgcaacaa ctgggtttgc aaaaaggaga ccgcgtagca
     1501 ctgctcagta aaaactgtgc gcactggatc atggccgata tcgctatcat gatgggtggt
     1561 tttgtgagtg tgcctctgta cgccaccatc acggccgaaa ccattcagca gatactggac
     1621 cacagcggca gcaaagccat tatcattggc aaactcgacc attttgccac gcaggcagcg
     1681 ggcatccccg aaagagtggc cgacattcat gtggaagcct atggcaaccg cggcacctac
     1741 agctgggaag cctggctgca ggagcacatg ccgctggcac agccgttatt gcccaccgac
     1801 gatgaagaat tgctgaccgt catgtataca tcgggcacca ccggcaatcc caaaggggtg
     1861 atgcatacgg tgggcacttt ccgcaatacg acgaacctgc tggatgtgat cggtatacaa
     1921 aagcatcctg tcatcttcag cttcctgcca ctgagccata ttgcggagcg catcggtatc
     1981 gagatcaccg gcatcatgct gtgcggcagc ttcagtttcc tcttgtctat tgaaagtttc
     2041 cctcaggacc tgcaggctac gcaacccacg catttctttg ccgtgccgag gctctggcaa
     2101 aagttccgcg aaaagatcaa cgaaaaattg cccgacagca aactgaatac gttactgaag
     2161 atccccatcc tgagcagcat tgtaaaaaag aagatccgga aagggctggg cctctccaat
     2221 gccacccgca ttttcgtggg ggcagcaccc atttcggtag aactgttgca gtggtacaaa
     2281 aagctggaca tcgaaatatt gcaggcctat gccatgacgg aggattgcat ttacggccac
     2341 ttcaacctgc cgggtgccaa caaactggga acggtaggca ggcccttgcc gggtgtacaa
     2401 tcacgcattt
//
LOCUS       DATIQF010000164         1534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_17764, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000164 DATIQF010000000
VERSION     DATIQF010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17764"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1534
                     /locus_tag="VLL95_02605"
     CDS             <1..>1534
                     /locus_tag="VLL95_02605"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR37781.1"
                     /translation="QFGGMLNFVLRDGSDINKPFQFETQNTVGTYGLVNTYNAIGGET
                     EKVHYYGFYDHRSADGWRQNSRYRVGTGFATVTYKLNKKWNIAAEYTNWHANSQQPGG
                     LTDAQFAQNDKQSFRARNWFDLQWNIAAIKSTYEFNEHSRLQATFFGFTGDRSSVGFM
                     QPMTVKDSINAATLQYNNRVVSVDKYRNKGAEFRYITDYKLLKGKSTLSAGVRYYDGL
                     TKRYNNGKGTTGNDFDLTLVEDYQQKLQFNTQNVAAFAENIFHIGSKFIIIPGLRFEH
                     IANQVTGQIGVSNGNPVKAADASKTRNFLLAGVGAEYHIGNTELYANWSQAYRPVLFS
                     DMTANVTTDVIDPNLQDAKGYNADLGYRGKIKDYLFFDVSAFYLQYNNRIGLIAQQNP
                     DGSFYNLRTNVGNSTSKGVEAMAEFNPIKAFSNNLKNGSFSVFASIGYTDARYADYSI
                     TSRQGNTLVTTTYNNKKVENAPEWIVRYGINYFWKGLTATMQWSYVSDAFSDANNTLA
                     PTA"
BASE COUNT          431 a          429 c          357 g          317 t
ORIGIN      
        1 gcagtttggt ggcatgctca attttgtgtt gcgtgatggc agcgacatca acaagccttt
       61 ccagtttgag acccaaaaca ccgttggcac ctatggcctc gtcaacacct acaacgccat
      121 aggcggcgaa actgagaaag tacattacta cggcttctat gatcaccgca gcgccgatgg
      181 ctggcggcaa aacagccgat accgggtggg cacaggcttt gctaccgtta cttacaagct
      241 gaacaagaaa tggaacattg cagccgaata caccaactgg cacgccaaca gccagcagcc
      301 cggcggcctc accgatgcac agtttgcaca aaacgataag cagagtttca gagcccgaaa
      361 ctggttcgac ctgcaatgga atattgccgc catcaaaagc acttacgaat tcaatgaaca
      421 cagccgtttg caggctacct tttttggttt caccggcgat cgcagcagcg tcggcttcat
      481 gcagcccatg accgtgaagg atagcatcaa tgccgccact ttgcagtaca acaaccgggt
      541 agtatcagta gacaagtacc gcaacaaagg cgctgagttc cgctacatca ccgattacaa
      601 attgctaaaa ggcaaaagca ctttgtctgc cggtgtgcgc tattacgatg gcctcaccaa
      661 acgctacaac aatggcaaag gcaccacggg caacgacttc gacctcaccc tggtggagga
      721 ctaccagcaa aaactgcaat tcaataccca gaacgtagcg gcatttgcgg agaacatatt
      781 tcacatcggc agcaaattca tcatcattcc cggtttgcgt tttgaacaca ttgccaacca
      841 ggtaacaggt cagatcggcg tgtcaaatgg caacccggtg aaagccgctg atgccagcaa
      901 gacccgcaac ttcctgcttg caggcgtggg tgctgaatac catattggca acactgaatt
      961 gtatgccaac tggagccagg cttatcgtcc cgtgctcttc agcgacatga cggcgaacgt
     1021 caccacggat gtgatcgatc ccaacctgca agatgccaaa ggctacaacg ccgaccttgg
     1081 ctaccggggc aaaatcaaag actacctgtt ctttgatgta agcgcctttt acctgcaata
     1141 caacaaccgc attggtttga ttgcgcagca aaaccccgac ggcagttttt acaacctgcg
     1201 caccaatgtg ggcaacagta ccagcaaggg cgtggaagca atggctgaat tcaatcccat
     1261 caaagcgttt tccaacaacc tgaaaaatgg ttccttcagc gtgtttgctt ccataggcta
     1321 taccgatgcc cgctatgccg actacagcat caccagccgc cagggtaaca cactggtgac
     1381 caccacgtac aacaacaaaa aagtggagaa tgccccggaa tggatcgtac gttatggcat
     1441 caactatttc tggaaaggcc ttactgccac tatgcaatgg agttatgtga gcgatgcttt
     1501 cagcgatgcc aacaataccc tggctccaac agca
//
LOCUS       DATIQF010000165         2485 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_2563, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000165 DATIQF010000000
VERSION     DATIQF010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2485)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2485)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2485
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2563"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(235..1611)
                     /locus_tag="VLL95_02610"
     CDS             complement(235..1611)
                     /locus_tag="VLL95_02610"
                     /inference="COORDINATES: protein motif:HMM:TIGR04131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type B sorting domain-containing protein"
                     /protein_id="HSR37782.1"
                     /translation="MPAQLCTGSLGDPVVKIDFGNGSGTGGYVPTNAYQYSNSGCPND
                     GYYTIATSIPVCWGGVWHTPVADHTGGGAFLLVNATFTPGDFFVSKVSGLCPGTTYEF
                     AAWMMNVLKGGGIRPNVTFRIEDVNGNVLQSYNTGDVPNTALPEWRQYGFFFTTSNSA
                     TEVVLRMTNNAPGGIGNDIAMDDITFRPCGPTVNSIIVGYGDSAAACVEQPNSYSMTA
                     VVSAGYNNPLYQWEVSDDGGSNWTNIAGATTLSYTRPSSAPGNYLYRVAVAESVNGNR
                     ASCNVHSNLLKVTVHPPPIVNAGPDRTSLSGNTITLNASVTGDQPTYVWRPSVFLSDS
                     VSLTPTLTPLNDQVYTLHATSKYGCSAMDEMMVWVANDIYVPNAFTPNNDGLNDYWRI
                     PFLDPGLGATVRVFNRYGQVVYQVTADNVNWDGKWKGKEQPAGAYAYQVTFKDGRPTM
                     KGTVMLIR"
     gene            complement(1733..>2485)
                     /locus_tag="VLL95_02615"
     CDS             complement(1733..>2485)
                     /locus_tag="VLL95_02615"
                     /inference="COORDINATES: protein motif:HMM:NF004489.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HSR37783.1"
                     /translation="EFSILRIADMSIHISASPGSIAKTVLMPGDPLRAKIIAEKYLQE
                     PRLVNQTRNVLMYTGFYDGVPVSIAASGMGCPSIGIYSYELYTEFEVENIIRIGTCGA
                     YTTDMKLFDLINVSQSASESTFALYAWGIEGEVLLPSSHIFEKINDIARQGQEAHTAW
                     SRLLQAPVHCSDIFYRQSMDLPAVAARHHCVAVEMESFALFANAQHLGKQAACLLTVS
                     DVIPTHEKISADQREQSLHPMIELALETARHL"
BASE COUNT          636 a          645 c          623 g          581 t
ORIGIN      
        1 gccggcatgg tgatagtggc cgacggtacc aatgaggccg catcaaggct ggcccgtgtg
       61 ttgcgcaacg atccgggcat gggcgttatt cgtcatgcag acgcgggtta cgatatcgcc
      121 aaagacaccg cgaggaaaca ccgcctcgat ttgaatgagc gtcttcacta aacaacaaac
      181 cgaaacattt tcaaaacgaa aaatcctgct gaccggcagg attttttgtg cttgctaacg
      241 aatgagcatc accgtaccct tcatggtggg gcgtccgtct ttaaaggtca cctggtaagc
      301 ataggcgccg gcaggttgtt cttttccttt ccatttaccg tcccagttca cgttgtcggc
      361 agtcacctgg taaaccacct gcccgtaacg attgaacacc ctgacagtgg ctcccaaccc
      421 cggatccaaa aagggaatgc gccagtaatc gttcaaccca tcattgttgg gtgtaaatgc
      481 attgggcaca taaatatcat tggccaccca caccatcatt tcatccattg cactgcatcc
      541 gtatttgctg gtggcatgca gcgtataaac ctggtcattc agcggagtca aggtgggagt
      601 aagcgaaaca gaatcgctta agaaaaccga aggacgccac acataagtag gttggtcgcc
      661 ggttacagat gcattcaggg tgatggtatt gccactgagt gaggtacggt cgggccctgc
      721 attgacgatg ggcggcggat gcacggtcac tttcaacaaa ttggaatgca cgttgcagga
      781 ggcccggttg ccgttcactg attcggccac cgccacacgg tacaggtagt tgcccggcgc
      841 agaggatggc cgggtataac taagcgttgt ggcgccggcg atgttggtcc agttgctgcc
      901 accatcatca ctcacctccc attggtacag cgggttgttg tagcctgcag atacaacggc
      961 tgtcatgctg taagaatttg gctgttccac acaggcagct gcagaatcgc catatccaac
     1021 aatgatactg ttcacagtag gtccgcaggg ccgaaaggtg atgtcatcca ttgcaatatc
     1081 gtttccaata ccgccgggag cattgttggt catgcgcagc accacttcgg tggccgaatt
     1141 gctggtggta aaaaagaacc cgtattgcct ccattcaggc agcgctgtat tgggaacatc
     1201 gcccgtgtta tacgactgca aaacattgcc gttcacatct tcaatcctga aggtgacatt
     1261 tggcctgatc ccacctccct taagcacatt catcatccag gcagcgaatt cataggtggt
     1321 acccgggcat aaaccggaaa ccttgcttac aaaaaaatcg cccggcgtga aagtggcatt
     1381 caccagcagg aaggcgccac cacccgtatg atcagcaaca ggagtatgcc aaaccccacc
     1441 ccagcaaaca ggaatagagg tcgcgatagt atagtagccg tcattggggc agccggaatt
     1501 gctgtattgg taagcattgg tgggaacata gccgccggtt ccactgccat tgccgaaatc
     1561 aatcttcaca acgggatcac ccaggctgcc cgtgcacaat tgggcaggca atgaagtttg
     1621 agttgcaagc aacattgcaa tcaacaacag gtgtaagtaa taacggtgtg cgcccatcag
     1681 gaatcggcat tgtgatatgc gaagctattc aatttcggct ggagctgcct tgctacaaat
     1741 gcctcgctgt ttccaatgcc agttcaatca tggggtgcaa cgattgttca cgctggtcgg
     1801 ctgaaatttt ttcatgcgta ggaatgacat ctgaaactgt caagaggcaa gccgcctgct
     1861 tcccaaggtg ttgggcattc gcaaacaatg caaaagattc catttccact gccacgcaat
     1921 gatgcctggc tgccacggct ggcaaatcca tgctttggcg atagaaaata tcgctgcaat
     1981 gcacaggcgc ctggagcagg cgggaccagg ctgtatgcgc ttcttgccct tgcctggcta
     2041 tatcattgat tttctcaaat atgtggctcg aaggcagcaa tacttctccc tctatgcccc
     2101 atgcatacaa cgcgaatgtc gattcactgg cagattgcga cacattgatc aggtcaaaca
     2161 atttcatatc ggtggtgtag gcgccacaag tgccgatacg aatgatgttc tccacttcaa
     2221 attccgtata cagttcatac gagtaaatac cgatggaagg acagcccatc ccgctggcag
     2281 caatgctcac aggaacccca tcgtaaaaac cagtatacat gagcacgttc ctcgtttgat
     2341 tcaccaaacg tggttcctgt aaatattttt cagcaatgat tttggcccga agcggatcgc
     2401 ccggcatcaa aactgttttg gctatactac cgggggaggc actaatgtga atactcatat
     2461 ctgcaattcg aaggattgaa aattc
//
LOCUS       DATIQF010000166         1625 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_200309,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000166 DATIQF010000000
VERSION     DATIQF010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1625
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200309"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..564)
                     /locus_tag="VLL95_02620"
     CDS             complement(<1..564)
                     /locus_tag="VLL95_02620"
                     /inference="COORDINATES: protein motif:HMM:NF012361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HSR37784.1"
                     /translation="MSVRYKEFSGLNLPALEQEILAKWSAEQAFEKSVSLREGAEPFV
                     FYEGPPSANGMPGIHHVISRTLKDLVCRYKTMKGYQVKRKGGWDTHGLPIELGVEKEL
                     GITKEDIGKKITVAEYNQKCREAVLRFKDKWDEITRKMGYWVDLNDPYITFENNYIES
                     LWWLLKKMYDRGLLYQSVSIQPYSPAAG"
     gene            687..>1625
                     /locus_tag="VLL95_02625"
     CDS             687..>1625
                     /locus_tag="VLL95_02625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37785.1"
                     /translation="MRKSFTYLLLSLASLLGMNPLFAAVFTVTTKADAGPGSFRDALT
                     KAANNGASEKDSILFNLPGATDADRTIILLSKLPEMTSNLVIDGTSQPGPGFGTGFAK
                     VRLEVANVPQPFDPYNIPSILEASKQEDISIFGLVFFYSNWTIFSTNEKCGGVKFSEC
                     KRIKIGAAGKGNIFKGVTYAISCLSQFATANYDPKAGGLIVQGNMVGYTENGDFPYLS
                     GAYFNYTEYFLATSYFGNILIGGDKVEDGNVVNASNISIWGWSSIGTDDIRIANNSFC
                     VSSRRNPGIDSSQNSITIRIRDQNQGVIVENNIINGF"
BASE COUNT          420 a          367 c          390 g          448 t
ORIGIN      
        1 gccagcagca gggctgtagg gctgaatgct tacactctgg taaagcagtc cgcggtcgta
       61 catctttttg agcagccacc acaggctttc gatgtagttg ttttcgaagg tgatgtaggg
      121 atcgttcagg tccacccaat agcccatttt gcgggtgatc tcatcccact tgtctttgaa
      181 gcggaggacc gcttcgcggc atttctggtt gtattcagct acggtgatct ttttgccaat
      241 gtcctctttg gtgatgccca attccttttc cacgcccagt tcaattggca ggccatgggt
      301 atcccagccg cccttgcgtt ttacctggta gcccttcatg gttttgtagc ggcacaccag
      361 gtctttgagg gtacggctga tgacgtggtg gatgccgggc atgccgttgg cactgggcgg
      421 gccttcgtaa aacacgaaag gctcagcgcc ttcgcgcagg cttacacttt tttcaaaagc
      481 ttgttcggca ctccatttgg ccagtatttc ctgctcaagg gcaggcaggt tcaatcctga
      541 aaactcttta tagcgaacgg acatagtata aaaaggctaa aaatgggtgc aaaggtaagg
      601 tttgaggcag ttgaatgtgg caaagaaaaa cctgcacaac atacccagtc atgtgttatg
      661 tttgtcgcaa catcgaatca ggatttgtga ggaaatcatt cacttactta ctactctctt
      721 tggccagcct tttgggcatg aacccacttt ttgcagccgt ttttactgta accaccaaag
      781 cagatgccgg gcccggcagt ttcagagacg ctttaaccaa agcagccaac aatggtgctt
      841 ccgaaaaaga cagcatactg tttaacctgc caggggctac tgatgccgac agaacaataa
      901 ttctgctttc caaattgcct gagatgacct ctaatctggt aattgacggc acatctcaac
      961 ctggacccgg atttggaact ggatttgcaa aagtgaggct ggaagtagcg aatgttcctc
     1021 aaccgtttga tccctataac attccttcca tcttggaagc ctccaaacag gaggacatca
     1081 gcatttttgg attggtattt ttctatagca actggacgat attttctacc aatgagaagt
     1141 gtggaggtgt caaattttca gagtgcaaaa gaattaaaat cggtgcggcc ggaaagggca
     1201 acatcttcaa gggcgtaaca tatgcaatat catgcctgag tcagtttgcc accgcaaact
     1261 acgatccaaa agcgggaggt cttattgttc aaggtaacat ggtaggatat accgagaatg
     1321 gggatttccc ttacttgagc ggcgcctatt ttaactatac agagtatttt ctagccacca
     1381 gctattttgg aaacattctg attggcgggg ataaagtaga ggatggaaat gtagtaaatg
     1441 cttcaaacat cagcatttgg ggttggtcat ctatcggtac cgacgatatt cgaattgcca
     1501 acaactcctt ttgtgtatca tcacgtcgca atccgggcat tgattcgagc cagaattcaa
     1561 taactatccg cattagggat cagaatcaag gtgttattgt cgaaaataac attatcaatg
     1621 gcttt
//
LOCUS       DATIQF010000167         1931 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_78621, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000167 DATIQF010000000
VERSION     DATIQF010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1931
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78621"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1211
                     /locus_tag="VLL95_02630"
     CDS             <1..1211
                     /locus_tag="VLL95_02630"
                     /inference="COORDINATES: protein motif:HMM:NF012700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MutS2/Smr-associated SH3 domain-containing
                     protein"
                     /protein_id="HSR37786.1"
                     /translation="HIELNRAYHPFLYLYNKNSDKPTIPLDIKLDDKSRILVISGPNA
                     GGKTVTMKTIGLCQLMLQAGLLVPVRADSVMGIFKQLFIHIGDTQSIEFELSTYSSHL
                     QHMKYFLELANGKTMFFIDELGSGSDPNLGGAFAEVIMEELARKHSMGVVTTHYLNLK
                     VMANRVPGIINGAMQFDEEKLSPLYKLVVGKPGSSYTFSIAERIGLPKPLIQRARKLV
                     DEDHFTLDKLLNRTEQDLQKLETRQVELQQLMKENERLKKEMEKVLNREKHHQQLELL
                     KQQNRFREDQLTYLKEMERKLKAMVIEWRKTDNKDEVVKLIHALLFKQKEKQTTEKKD
                     KKVDSRYTEISEPIAEGDKVKMKKNRQVGVVKEIRGKKAIVQVGVIPITIDVAELVKV
                     IERPEPAPDL"
     gene            1389..1476
                     /locus_tag="VLL95_02635"
     tRNA            1389..1476
                     /locus_tag="VLL95_02635"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1423..1425,aa:Ser,seq:tga)
     gene            1603..>1931
                     /locus_tag="VLL95_02640"
     CDS             1603..>1931
                     /locus_tag="VLL95_02640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37787.1"
                     /translation="MKKFILSILTFLYIFGTTGTTLSAHYCMGRLADWSIGHSKEDTC
                     GRCGMEKSGDRDNGCCSDEETFVKNTADQKPGSYPCAPLQPPAEHQAYYPVHCEPSMM
                     ACGSIVF"
BASE COUNT          537 a          452 c          530 g          412 t
ORIGIN      
        1 cacacattga attgaacagg gcgtatcacc cgtttctgta cctgtacaac aaaaacagcg
       61 ataagcctac cattcccctg gatataaagc tggatgacaa gagccgaata ctggtgatca
      121 gcgggccgaa tgccggtggc aaaacggtga ccatgaaaac catcggtctt tgccagctga
      181 tgctgcaggc gggattgctg gtgccggtga gggcggatag cgtgatgggc attttcaaac
      241 aactgttcat tcatattggc gacacgcaaa gcattgagtt tgagctcagc acctacagca
      301 gtcatttgca gcacatgaag tatttcctgg agctggccaa tggcaaaacc atgttcttca
      361 ttgatgagct cggcagtggc agtgatccca acctgggcgg cgctttcgcc gaagtgatta
      421 tggaagaact ggcccgcaag cacagcatgg gggtggtcac cacgcattac ctcaacctga
      481 aggtgatggc caaccgggtg cccggtatca tcaacggcgc catgcagttt gatgaagaaa
      541 aactgagccc gctttacaaa ctcgtagtgg gcaaaccggg gagcagttac actttttcca
      601 ttgccgaaag aattggattg cccaagcctt tgatacagcg ggcacgtaag ctggtcgatg
      661 aagatcattt tacgctggat aaactgctga accgaaccga gcaggatctg caaaagctgg
      721 agacgaggca ggtggaattg cagcagctga tgaaggagaa tgagcggttg aaaaaagaga
      781 tggagaaggt gttgaaccgg gaaaaacacc accagcaact ggaattgctg aagcagcaaa
      841 accggttcag ggaagaccag ctgacctacc tgaaagagat ggagcgcaag ttgaaagcca
      901 tggtgattga gtggcggaaa acagacaaca aggatgaagt ggtgaaactg atccatgcgc
      961 tgcttttcaa acaaaaagaa aaacagacca cagaaaagaa ggataaaaaa gtagacagcc
     1021 gctacaccga aatttcagaa cctattgccg aaggcgataa ggtgaaaatg aaaaagaacc
     1081 ggcaggttgg ggtggtaaaa gagatcaggg gtaaaaaagc catcgtgcag gtgggtgtca
     1141 ttcccatcac cattgatgtg gctgaattgg tgaaagtaat agagcgcccc gaacctgctc
     1201 cagaccttta atactagcgg catggtcacc gcttttccag gcattcagat tgttttaaca
     1261 aattgggata gggctttgcc agcgcctttc attgcctgaa aggcttgtgt ggcaaggctt
     1321 ttggctgatt ttgccggcgg ctcccaagat tttttttgcc aattgaatcg cgaagctatt
     1381 tttgccgcgg agagattgca gagcggtcga atgcggcggt cttgaaaacc gttgaggtga
     1441 aagcctccgg gggttcgaat ccctctctct ccgccagtaa tccactgaag cccctgtgac
     1501 aacacggggg cttcgtcatt taagtccatt ggcaggatcg ttctggcagg gtcaattaac
     1561 atgggccttt ctgaaaatac ctgtacattt gagataacgg tcatgaaaaa gttcatcctt
     1621 tccatactga ccttcctata catcttcggc acgacgggga caaccctgag cgcgcattat
     1681 tgtatgggca ggctggccga ctggagcatc gggcacagca aggaagacac ctgtggccgt
     1741 tgcgggatgg agaaatcagg cgaccgggat aatggatgct gctctgacga ggaaaccttc
     1801 gtcaaaaaca ccgcagacca gaagccggga tcatacccct gcgctcccct gcagccgccc
     1861 gcagaacatc aggcatatta ccccgtccat tgcgagccgt caatgatggc ttgcggatcc
     1921 attgtcttca g
//
LOCUS       DATIQF010000168         1867 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_200337,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000168 DATIQF010000000
VERSION     DATIQF010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1867
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200337"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            483..1508
                     /locus_tag="VLL95_02645"
     CDS             483..1508
                     /locus_tag="VLL95_02645"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HSR37788.1"
                     /translation="MKNLNFFRACFVLTSCAITIGQTNAAEARVNQLYQTNCTNCKLQ
                     QQSVTLTAPTPSNSNFRFISANPSDPAFTGNDLNGTLVYTDINNVTVTIYGTISRTVK
                     NGGTQLGVFMAETNNTYTTLTGKGYVLVIPGQELNIANGQTHNTASDPMDQVLNSPIL
                     PALGLNLKGQKNGKVAVLTWSALSEKNTDKYIVERSINGNAYQAVGSITSNNNAASSS
                     AYTHTDRPEANLPAYYRIRLIDLDGKEALSNIVSINFMQHAGAHQLYPNPSNGLSFLS
                     LGHAGNFQIDLLTTNGQLLHSQTVKATEAGTTTAINRKHLQPGTYIVKVTDRETATTT
                     TRKLMIQ"
     gene            1600..1845
                     /locus_tag="VLL95_02650"
     CDS             1600..1845
                     /locus_tag="VLL95_02650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37789.1"
                     /translation="MPQEYGTQKTVSAHQKLPQLWPSFFVEKEMGESLGGGKVLQRQV
                     QEANKNGGQLKTMAAATVLNQHSQYLGYAGFTYCMWE"
BASE COUNT          549 a          462 c          402 g          454 t
ORIGIN      
        1 aaaaattcct taaacgattg aatccgaatg gccagaagat caggcgaatc ggccaggttt
       61 ttggcctttc cgaagttgat cctgttgttc aattgtgttg aagacatatg cttagaacct
      121 gttttttatc gattgattag ccgcaaaaac accgaaggcc ctgccggtta gccggagagc
      181 ttatttaaga aaccattaaa aatgagctgt ttgtgccccc aatgtgtatt tgccctaatt
      241 taaaaaagga tggcaaaagt aagggtgaca gtctagaaaa ccaaacaggc ttaatatgtc
      301 ctgaaaaatg accccaccaa gggcgcaaag tagggagttt atccggcaaa attggcaagg
      361 ttttcacttt tttgcccgat ctgttcagtg cggcagccca tgaaatcccc accctgtcaa
      421 ttacttggga ttggtttccg gaaggatgcc aagtattttt cgacaaccaa atcccctaac
      481 ccatgaagaa cctgaatttt ttcagggctt gctttgtttt gacaagctgt gcaatcacca
      541 ttggtcaaac gaatgcagcc gaagcccgtg taaaccaatt gtaccaaacc aattgtacca
      601 actgcaaact gcaacagcaa agtgttacat tgaccgcccc cacccccagc aacagcaact
      661 tccgttttat ttccgccaat cccagcgatc cggcatttac cgggaatgac ctgaacggca
      721 ccctggttta cacggacata aacaatgtga cggtaaccat ttatggcacc atttcccgaa
      781 cggtaaagaa tggaggaacc caacttgggg ttttcatggc tgaaaccaac aacacctaca
      841 ccacccttac aggcaaagga tatgtactgg tcattcctgg ccaggaactc aatattgcca
      901 atgggcaaac gcacaacacc gcctctgacc ctatggacca ggtactgaac agccccattt
      961 taccggcact gggcttgaat ctgaaaggac aaaaaaatgg aaaggttgcc gttttaacct
     1021 ggtcggcact ttccgaaaaa aacaccgaca agtacatcgt tgaacgcagt atcaacggga
     1081 acgcctacca ggcggtgggc agcattacct caaacaacaa cgccgccagt tcaagtgcct
     1141 acacccatac cgaccgaccg gaagcaaacc ttcctgccta ctatcgcata aggcttatcg
     1201 atcttgatgg aaaggaagcg ttgtctaata ttgtctccat caattttatg cagcacgctg
     1261 gcgctcatca attgtatccc aatccatcta acggtttgtc ttttctttcc ctgggacatg
     1321 caggcaactt tcaaattgac ctgctcacta ccaatggtca gttgttgcat tctcagactg
     1381 ttaaagcaac agaagccgga acgaccacag ccatcaaccg gaagcatctg caaccaggta
     1441 cctatatcgt taaagtcacc gatcgggaaa cggccactac caccaccagg aaactgatga
     1501 tacaatagcg gttgacttcc ggcatttcat tttgaaaagg gcaattgtca atggcattgc
     1561 tctttttttt acaacaaaca ggtgctgtaa ttgtattgta tgccacagga atatggcaca
     1621 caaaaaaccg tttctgccca ccaaaaactg cctcagttgt ggccgtcctt tttcgtggag
     1681 aaagaaatgg gagaaagttt gggaggaggt aaagtattgc agcgacaggt gcaggaagca
     1741 aacaaaaatg gtgggcagtt gaaaacaatg gctgctgcta ccgtcctgaa tcaacattcc
     1801 caataccttg gctacgcagg tttcacttat tgcatgtggg aatagcaaag gtgttgtggc
     1861 gttttca
//
LOCUS       DATIQF010000169         3296 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_169788,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000169 DATIQF010000000
VERSION     DATIQF010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3296
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169788"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(22..960)
                     /locus_tag="VLL95_02655"
     CDS             complement(22..960)
                     /locus_tag="VLL95_02655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37790.1"
                     /translation="MEANRKLRFGVMTLLYYSEGTIVEMIDNCAPFVDKIYVGFSELP
                     WSDYNKNARTEFKGSASLEVLKDSKWHDKIEVISGVWKSEVDERNDILSKARQDGMDY
                     LIIQDADEFYHPEDYRRNIEGITANPNHPVYRCPWTVFWKNTENVILIRPDMYSKPTT
                     VTTCPNFAVNCNMPDVQFAVTRLANRMNEAFMLTGLCLHLAWVLDDEKVWMKVQTWGH
                     SHQFNGKKWFKHKWLAWKPSTSYIGNITRANYLKAVPFKGELPEQLKTMPQLKQEYVP
                     LTMAEKLDCMIMDATSVVLQSLKILKARTKRLLGQS"
     gene            complement(1102..2970)
                     /gene="asnB"
                     /locus_tag="VLL95_02660"
     CDS             complement(1102..2970)
                     /gene="asnB"
                     /locus_tag="VLL95_02660"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HSR37791.1"
                     /translation="MCGISGILSKNVTSIPEFLQRSIVLLEHRGPDQQAFWHENEVGL
                     GHARLSILDLSPAGAQPMLSADGRYVLAFNGEIYNHLELRKKHLAQHQFRGHSDSETI
                     LELFALKGPSVFAEMVGMWAILIWDKTEKCLYLSRDRFGQKPLYVRKFADGWSFASEM
                     KVLMQEGEWQTPDYTSLVEYVATSNYGHLGERTFFNDIFHFPAASWCRIKVTDSNLQP
                     QSYWSLPVISEKDRVPVGPDQLKTIRELLIDSVLSQTLSDVPIGITLSGGIDSSVIAG
                     ILAQNYQLPLQVFTATSPGHKWDEGGYVNAVMSHWNRKNWELNIADLSSFDFKNDLNT
                     ILWHQEEPFGDPSILAHAELMRMASEKGIKVILGGQCSDELFLGYDHALTPILIQQAK
                     LHEWSLLKENIKGIGWTKMQVARLALTGLLPSLELQLRRASRKARRKHLPEEWLKNVD
                     DKAVRFYRQDQVDNVRQESIYGIHLPHLLHYDDRNAMAYGVEGRTPFLDHRLWEFVST
                     LKTDAFLKNGKRKHILREACSQFLPPMVQQRLDKIGFFTPLDSWLQSNIGTVEQEIHQ
                     FIPAPIEEKIEKHLLDYRAARRSVEGGQLLWRLYVTALWSKQFLKTRFHSSIKDRE"
     gene            complement(2978..>3296)
                     /locus_tag="VLL95_02665"
     CDS             complement(2978..>3296)
                     /locus_tag="VLL95_02665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37792.1"
                     /translation="VSGVEDPESDESSKGLVRLYEVGAVSEAVNQLESVIQNWQPTVP
                     DKARALALEHFSIANCVASYQSFAMHLKPSAKALPFRFSAAKHVGSFLVATLRLIKYK
                     LTK"
BASE COUNT          831 a          845 c          681 g          939 t
ORIGIN      
        1 ccgcataaaa ccgataattc atcacgattg ccccagcaac cgcttcgttc ttgccttcag
       61 tattttcagg ctttgtaata caacactggt agcatccatt atcatgcaat ccaatttttc
      121 agccatcgta agcggcacat attcctgctt caactgaggc attgttttca gttgttccgg
      181 caactcgcct ttgaatggga ctgctttcag ataattggca cgggtaatgt tacctatata
      241 actcgtggat ggtttccacg ccagccattt gtgcttaaac catttctttc cattgaactg
      301 gtggctgtgt ccccaggtct gcactttcat ccagactttt tcatcatcca atacccatgc
      361 caggtgcaag caaaggcctg tgagcatgaa ggcttcattc attctgttgg ccaatctggt
      421 tactgcgaat tgcacatcag gcatattaca gttcacggcg aaattgggac aggtagtcac
      481 agtggttggc ttgctgtaca tgtcaggcct gatcaggatt acattttcag tattcttcca
      541 gaatacagtc catggacagc ggtaaaccgg gtgattggga ttggccgtaa tgccttcaat
      601 atttctcctg taatcttccg ggtgatagaa ttcgtcagca tcctggataa taaggtaatc
      661 cattccatcc tgccttgcct tgctcaaaat gtcatttcgc tcatccactt cagacttcca
      721 aacgccactg atgacttcaa tcttgtcgtg ccatttgctg tcttttaaaa cttcaaggct
      781 ggctgatcct ttgaattcag tcctggcatt tttgttatag tcagaccacg gcaattcact
      841 gaagcccaca tatatcttat cgacaaaagg agcacaattg tcaatcattt ccacaatggt
      901 gccttctgaa taatacaaaa gggtcattac gccgaaacgc agctttctat tagcttccat
      961 gcaaacaacg ttttttttgt aacaacggca cagagcagca tcttactggt accctggatc
     1021 ccagattttt tgagcccccg ttatattgcc gattattata cattttttct tttgggatta
     1081 tttaaatgtg aatgggtatc actactccct gtccttaata ctggaatgaa aacgagtttt
     1141 taaaaactgc ttgctccaca atgccgtcac gtaaagccgc cataataatt ggccaccttc
     1201 cacacttctc ctcgcagccc gataatccag caaatgtttt tcaattttct cttcgatagg
     1261 cgccggaata aactggtgga tttcctgctc tacggttcca atgttgctct gcaaccaact
     1321 gtcgagtggt gtaaagaacc ctatcttatc aagcctttgc tgtaccatgg gaggcaaaaa
     1381 ctggctgcac gcttcccgca gaatatgctt tcgctttcca ttcttaagaa aagcatccgt
     1441 cttcaatgtt gacacaaact cccacaggcg atgatcaagg aacggagtgc gaccttccac
     1501 accataagcc atcgcatttc ggtcgtcgta atgcaaaaga tgcggcaggt gtattccata
     1561 aatcgactcc tgacgaacat tatccacctg gtcctgcctg taaaacctta ccgctttatc
     1621 gtccacattt ttcagccatt cttccggcag gtgctttctc ctggctttcc tgctggccct
     1681 gcgcaattgc agttcaagcg agggcaacag tcctgtcagt gccagtcttg caacctgcat
     1741 tttcgtccat ccgattccct tgatgttttc cttgagcaaa ctccactcat gcagctttgc
     1801 ctgctgaatc aatatcggtg ttaaggcatg gtcatagccg aggaataact catcggaaca
     1861 ttgtccaccc aggatcactt taataccttt ctctgaagcc atccgcatca attccgcatg
     1921 ggccagaata ctgggatctc caaagggttc ttcctggtgc cagagtatgg tgttcagatc
     1981 gttcttgaaa tcaaaggaag acagatccgc aatattcaat tcccagttct tccgattcca
     2041 atgtgacatt accgcgttta catatcctcc ctcatcccat ttatggccgg gtgaagtggc
     2101 tgtgaacacc tgcaatggca attggtaatt ttgtgccaga atgccggcaa tgaccgaact
     2161 gtcaatacct cccgaaagag tgataccaat aggaacatca gacaaggttt gcgacaagac
     2221 ggaatcaatc aacaattcac gaatcgtttt caattgatcg gggcccaccg gcaccctgtc
     2281 tttttcgctt ataaccggca gcgaccagta tgattgtggc tgcaggttac tgtctgttac
     2341 ttttatccgg caccaggaag cggcgggaaa atggaaaatg tcattgaaaa atgtccgctc
     2401 acccaaatgg ccgtaattgc tggtggccac atattccacc aatgaagtat agtcgggagt
     2461 ttgccattcg ccttcctgca tcaacacttt catctcactg gcaaaactcc atccatctgc
     2521 aaacttcctg acgtaaagcg gtttctgtcc gaaacgatca cggctgagat agagacactt
     2581 ctccgtttta tcccaaatga ggatggccca catcccaacc atttctgcaa aaaccgaagg
     2641 cccttttagc gcaaacaatt ccaggatcgt ttcactatct gaatgtcctc tgaattgatg
     2701 ctgcgcaagg tgttttttgc gaagttccag gtgattgtaa atctcgccgt taaaagccaa
     2761 cacatacctt ccatcggcgg aaagcatcgg ttgagctccg gcaggactca gatcaagaat
     2821 actcagacgg gcatgtccaa gtcctacttc attttcatgc cagaatgcct gctgatcggg
     2881 cccccgatgt tccaggagta caatggaacg ctggagaaac tcaggtattg acgttacgtt
     2941 ttttgaaaga atgccgctga tgccgcacat attgatgcta cttggtaagt ttatacttta
     3001 ttaatcgcaa ggttgctaca aggaaactgc caacgtgttt tgctgctgaa aaacggaaag
     3061 gtaatgcttt ggcgcttggt ttcagatgca tggcaaagga ttggtaagat gctacacagt
     3121 tggcaatact aaagtgttcc agtgccaggg ccctggcttt gtcgggcact gttggttgcc
     3181 aattttggat caccgattcc agttggttca ccgcctctga aacagcgccc acttcataca
     3241 gccggaccag ccctttggat gattcatcag actcagggtc ttctacccca ctcacc
//
LOCUS       DATIQF010000170         3085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_93795, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000170 DATIQF010000000
VERSION     DATIQF010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3085
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93795"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..315
                     /locus_tag="VLL95_02670"
     CDS             <1..315
                     /locus_tag="VLL95_02670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37793.1"
                     /translation="PYPTEILLKALADKFQTIAALDDLEYSIMQTSYDLSKETEGENE
                     TIAGLGYSEGLVKFTVVKKDGSSRPISGPFKFYFQFEYGCWSIMYIIFPGMGYPLPAS
                     QS"
     gene            complement(407..2386)
                     /gene="nagB"
                     /locus_tag="VLL95_02675"
     CDS             complement(407..2386)
                     /gene="nagB"
                     /locus_tag="VLL95_02675"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: protein motif:HMM:NF002557.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004342 - glucosamine-6-phosphate
                     deaminase activity [Evidence IEA];
                     GO_process: GO:0006046 - N-acetylglucosamine catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HSR37794.1"
                     /translation="MFTILDNNCLRKRISSQLLATHNNQLTMVTSYEKIPVRIFETPG
                     QGSAFAAQEIANLIRQKQADGKACVLGLATGSTPISMYKELVRLHKQEGLSFKNVITF
                     NLDEYYPLEREAVQSYWTFMHQHLFDHIDIDPANIHIPNGEWKQEEIKKYCLEYEAEI
                     EKAGGIDLQVLGIGNNGHIGFNEPGSSIHSKTRLVTLDNSTRTANSKDFQNISKVPRL
                     AVTMGISTILKARRILLMAWGFKASIVAKSVEGDVTEHVPASLLQQHNDCLFIIDEQA
                     ASELTRIKSPWLAGEIDWIPKMTRRAVINMALKLGKPVLSLTNHDYTENGLGELLVEK
                     GDAYEINLEVFYQLRDSITGWPGGKPNVVIPNHPERSTPYPKRCLLFSPHPDDDIISM
                     GGTFMRLHDQGHEVHVAYQTSGNIAVTDEFVTRFLDFAVGFEDMFGIDTEKSRNILQE
                     ARGFLAQKKPSQVDTPEVRQIKGLIRRCEAAATCRYVGLKEGQWHFQNLPFYETGTIT
                     KNPMGEEDVLQTMELLRKIKPQQVYCAGDLADPHGTHKVCLDIVFESMRRLKAAGDEW
                     VKDCWVWLYKGAWQEWDISEIEMAIPMSPDQVMKKRYGIFIHQSQKDMVPFQGSDNRE
                     FWQRAEERNANTANLYGKLGLTQYAAMEAFVRWHF"
     gene            2483..>3085
                     /locus_tag="VLL95_02680"
     CDS             2483..>3085
                     /locus_tag="VLL95_02680"
                     /inference="COORDINATES: protein motif:HMM:NF024804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HSR37795.1"
                     /translation="MPAVTTRKKILSHFSVDSLSGVAFKDHSRRKRIIERLSGLEEIT
                     INEISESLNISVPKATELLAELQREGFVEERGKRSEGPGRKATFYGLASNSCYFLGLE
                     IKKYKINIGVMGFDKTLVKGSYDIPFFLEDANESLAEIVKQVRKFIDESGVPIEKIVG
                     MGVSISGRINVKTGEILTIYHFSDAPVKQVLEEAFEMPIYL"
BASE COUNT          768 a          707 c          754 g          856 t
ORIGIN      
        1 ccttatccca ccgaaattct attaaaagcc ctcgccgaca aattccagac catcgcggca
       61 ttggatgatc ttgaatacag catcatgcaa accagttacg atctgtcgaa ggaaacagaa
      121 ggtgaaaatg aaaccattgc agggttgggc tattctgaag ggctggtaaa atttacggtg
      181 gtcaagaagg atggtagtag ccgacctatc agtggccctt ttaaattcta tttccagttt
      241 gaatatggtt gctggtccat tatgtacatc attttcccgg gaatggggta tcctttgccg
      301 gcatcacaat cctgaatgat cggcaaccgg ggtaaaacct ggaccaacaa aaaatcctgt
      361 gggatgtgtg ccgcacagga tttttatttt tagcgattac agattgctaa aaatgccagc
      421 gaacaaaagc ctccatggcg gcatactggg taaggcccaa tttgccatac aagttggccg
      481 tgttggcatt cctttcttcg gctctttgcc agaattcacg gttgtcgctg ccctggaaag
      541 gcaccatgtc tttttgtgat tggtgaatga aaatgccgta acgctttttc attacctggt
      601 cggggctcat ggggatggcc atttcaattt ctgaaatatc ccattcctgc caggcgcctt
      661 tgtacaacca tacccagcaa tcttttaccc attcatcgcc ggctgctttc agcctgcgca
      721 tggattcaaa tacgatgtcg aggcatactt tgtgcgtgcc atgcggatcg gccaggtcac
      781 cggcgcaata cacctgttgg ggctttattt tccgaagcaa ttccatggtc tgcagaacat
      841 cttcctcgcc catcggattc ttagtgatgg taccggtttc atagaagggg agattttgaa
      901 aatgccactg gccttctttc aaacccacat agcgacaggt ggcggccgct tcacagcgac
      961 gaatcaaacc ttttatctgg cgcacttcgg gggtatcaac ctggctcggc tttttctgcg
     1021 ccaggaatcc tcttgcttcc tgcagaatat tccttgactt ttcggtatca attccaaaca
     1081 tgtcttcaaa tcctacagca aagtcgagga agcgggtcac gaattcatcg gtcaccgcaa
     1141 tgttgccgct ggtttggtag gccacgtgta cctcatgtcc ctggtcgtgc aggcgcataa
     1201 aggtgccacc catgctgatg atgtcgtcat cggggtgagg cgaaaaaaga aggcaccgct
     1261 tggggtaagg agtgctgcgt tccggatgat tgggaatgac cacattgggt ttgcccccgg
     1321 gccagccggt aatgctgtca cgcagttggt aaaaaacttc aaggttgatc tcgtaagcat
     1381 cgcctttttc taccagcaat tcacccaaac cgttttcagt gtaatcatgg ttggtgaggc
     1441 tcagcacagg tttgcccagt tttagtgcca tgttgatgac ggctcggcgc gtcatcttgg
     1501 gtatccagtc aatttcaccg gccagccagg ggctcttaat gcgtgtcagt tcgctggcgg
     1561 cctgttcatc aatgatgaaa aggcaatcgt tgtgctgctg cagcaggctg gctggcacat
     1621 gttcggttac atcgccttct accgatttgg ccacaattga cgctttgaaa ccccaggcca
     1681 tcagcagtat tcttctggct tttaaaatgg tgctgatgcc catggtaacg gccaggcgag
     1741 gtactttcga aatgttctgg aaatctttgg agttggctgt ccgggtgctg ttatccagcg
     1801 ttaccagccg ggttttgctg tggatgctgg agcccggttc gttgaagcca atgtggccat
     1861 tattaccgat acccaacacc tgcaaatcaa tgccgccggc tttttcgatt tctgcctcgt
     1921 attccaggca gtattttttg atctcttcct gcttccattc gccgttggga atatgaatat
     1981 tggcagggtc aatatcaata tggtcgaata aatgctggtg cataaaagtc caatagctct
     2041 gcaccgcttc tcgttccaat gggtagtatt catcgaggtt gaaagtgatc acgtttttga
     2101 aactcaaccc ttcttgcttg tgaaggcgaa ccagttcctt gtacatggaa atgggggtgg
     2161 agcctgtagc cagccccagc acacaggctt ttccatcggc ctgtttctgc cttataaggt
     2221 tggcaatttc ctgtgcagca aatgcagaac cctggccagg cgtttcaaaa atgcgtaccg
     2281 gaattttttc gtaagaagtt accatagtca attggttgtt gtgggttgct agtagctggg
     2341 acgaaatcct cttccttaaa caattattgt ccaaaattgt aaacaaaatt tcaccgaatg
     2401 aaatttttat aaataaaaat gattaaataa ataaattaat ttacatattt gctggataaa
     2461 attcaattta taattcaata atatgccggc cgtaactaca cgaaagaaaa tattgagtca
     2521 tttcagtgtc gattcgcttt caggggttgc gttcaaggat cattcccgaa ggaagcggat
     2581 cattgagcgg ctgagcggcc tggaagaaat caccatcaac gagatttccg aatccctcaa
     2641 catcagtgta ccaaaagcta ccgaactgtt ggctgaactg cagcgtgaag gttttgtaga
     2701 agaacggggc aagcgttcgg aagggcccgg cagaaaagcc acattttatg gcctggcaag
     2761 caattcctgt tatttcctcg gcctggaaat caagaaatac aagatcaata tcggggtgat
     2821 gggcttcgat aagaccctgg taaaggggag ttatgatatt cctttctttt tggaagatgc
     2881 caatgaatca ctggccgaaa ttgtaaagca ggttaggaag tttattgatg aatcgggtgt
     2941 gcctattgaa aagatagttg gaatgggggt ttctatttct ggccggatca atgtgaagac
     3001 gggagagata ctgaccattt accatttctc agacgctccc gtgaagcagg tgctcgaaga
     3061 agcctttgaa atgcccatct acctc
//
LOCUS       DATIQF010000171         1981 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_276286,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000171 DATIQF010000000
VERSION     DATIQF010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1981
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276286"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..391
                     /locus_tag="VLL95_02685"
     CDS             <1..391
                     /locus_tag="VLL95_02685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37796.1"
                     /translation="IEEQFQTAKAETTLQHGGLEGAWWLEQATWTDGRLGEGRYAQAA
                     SLKLYVYPRFATAMFNKVTGEFLGATGGTYQYDGTTLTEVIDYATWGIPRGEKLSIRI
                     QMAEAGHYKQQWENSIEVWKKLKQNSW"
     gene            complement(408..881)
                     /locus_tag="VLL95_02690"
     CDS             complement(408..881)
                     /locus_tag="VLL95_02690"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR37797.1"
                     /translation="MPDLVLMDASFHPLLNNLPENWINTRWVVLAKNEGEAAEALFAG
                     AHACFLSHQHPEELFPLLQKTLESNEGETLVRIVQQLRSKADNQPAFDTNEYDLTTKE
                     KEILLLMRNGVHLKGIATATGNTYETIRTHVKRIYKKLGVASASEAVLKAMRMNI"
     gene            complement(1032..>1981)
                     /locus_tag="VLL95_02695"
     CDS             complement(1032..>1981)
                     /locus_tag="VLL95_02695"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37798.1"
                     /translation="DAYLQQKQFSPALPYMEEAEVHLERCRASNPAWFGLKIDCLMTK
                     AWSIYFNLHHSQRLDDCLNELNELLLEYGNNRQRMAFFSVVSLGMLRRYQWYNLPLEA
                     ISHSQYSYELARQENNLQAMISVLGELGMIHMFRNELKLAIQAFSKAVELCGEKEIGF
                     KAISTNYIAVCYRMLNKVSECEHWTIQTLALARAHGVKVYEEHANSNLAWIQIKRGNL
                     LTAEELARNSYDYLDKVQHPFIWLPIMPLLYVCLKNGDWRQAGKYAFPLYTPPRKRLP
                     DSMEAHLLPMVNAWLADDGENCLQQLKMLIQEAEITGHL"
BASE COUNT          494 a          466 c          489 g          532 t
ORIGIN      
        1 gatcgaagag caatttcaaa cggcaaaggc tgaaacaacc ttgcagcatg gcgggctgga
       61 aggtgcatgg tggctggagc aggccacatg gacagacggc aggttaggag aaggcaggta
      121 tgcacaagct gcctcgctga aactgtatgt atatccaagg tttgcaaccg ccatgttcaa
      181 taaggtaacc ggggagtttt tgggtgccac aggcggcacc taccagtacg atggcactac
      241 cttaaccgag gtgattgatt atgccacctg ggggattccg cgaggcgaaa aactgagtat
      301 acggatacaa atggctgagg caggacacta taagcagcag tgggaaaaca gcatagaagt
      361 ctggaaaaag ttgaagcaga actcgtggta gcgtttaggt tgtttcatca gatgttcatg
      421 cgcatggctt tcagcaccgc ttccgaggcc gaggctacac caagcttctt ataaatgcgc
      481 tttacatggg tgcggatggt ttcgtaggta ttgccggttg ctgtggcaat gcctttcaga
      541 tgaacgccat tgcgcattaa cagaagtatc tctttttctt tggtggtcag gtcatattca
      601 ttggtgtcga aagcaggttg gttgtctgcc tttgaccgca actgttgcac aatacgcacc
      661 agcgtttctc cttcgtttga ttccagtgtt ttttgcagca ggggaaagag ctcttcggga
      721 tgctgatggc ttaaaaaaca ggcatgggca ccggcaaaca atgcctctgc tgcctctcct
      781 tcatttttgg caagcaccac ccaccgtgtg ttgatccagt tctccggcaa attgttgagc
      841 aaaggatgaa aggaagcgtc catcaatacg agatctggca cgccgttttt tccgggaaag
      901 tcggataatg agtgccacaa atccacctgt cctgcgttgg ctagacggcg tactaatttt
      961 tccaaagctt cctgaacttc ttttcggtga tgcagtataa caatggcaac catttgcatt
     1021 ttgtattcca attaaagatg tccggtgatc tccgcttctt gtatcaacat tttcaactgc
     1081 tgaaggcagt tttcaccatc atctgccagc caggcgttca ccattggcaa taaatgcgct
     1141 tccattgaat ccggcagtct tttccttggg ggagtataca atggaaaggc atatttgcct
     1201 gcctgtcgcc aatctccatt tttcaggcac acataaagca atggcattat cggcaaccaa
     1261 ataaagggat gctgcacctt gtcgaggtag tcataactgt tccgggccaa ttcttcggct
     1321 gtcagcaagt tgccccgctt aatttgtatc caggccagat tgctgttggc atgctcttca
     1381 tacactttta cgccatgtgc cctggcaagg gcaagggttt gaattgtcca gtgttcacat
     1441 tccgatacct tattcagcat gcggtagcaa acagcgatat aattagtgga gatggccttg
     1501 aaaccaatct ctttctcccc acacagttcc acagccttac tgaatgcctg gatggccagt
     1561 ttaagttcgt tgcgaaacat atgaatcata cccaactctc ccagtactga aatcatggct
     1621 tgcaggttgt tctcctgccg tgccagttca taggaatatt gcgaatgcga tatggcttcc
     1681 agtggcaggt tgtaccattg gtaacgcctt agcattccta aagacaccac gctgaaaaat
     1741 gccatgcgct gcctgttgtt tccatattca agtaaaagtt cattgagctc gttcaggcaa
     1801 tcatcaagcc tttgagaatg gtggagattg aagtagatgc tccaagcctt ggtcattagg
     1861 cagtcgatct ttaagccaaa ccaggctggg ttgcttgccc ggcatcgttc caggtgcacc
     1921 tcagcttctt ccatatatgg caaagcggga gaaaattgct tctgctgcaa ataggcatca
     1981 g
//
LOCUS       DATIQF010000172         3729 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_291492,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000172 DATIQF010000000
VERSION     DATIQF010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3729
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291492"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(57..1340)
                     /locus_tag="VLL95_02700"
     CDS             complement(57..1340)
                     /locus_tag="VLL95_02700"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSR37799.1"
                     /translation="MTFSEFNFDSRLQDSIESMGYKTATPVQEQVIPVIMEGRDLIAS
                     AQTGTGKTAAFLLPIIHKLLTEPRDHHSVNCLVIVPTRELAVQISQALEGMSYFTDIG
                     GIPVYGGGDGDLFTQEKKALSTGADIVICTPGRMIAHLNMGYVKLQGLKYLVLDEADR
                     MLDMGFHGDILRIINYLPKERQNLLFSATMPPKIRELAKKILHDPAEVSIAISKPPEK
                     IRQGAFVVYDEQKIKLVTELLRTNPFRLAIVFCSSKESVKRLTFDLKKAHLKVAEIHS
                     DLEQTEREQVLLDYRNEKTRILVATDILSRGIDIDIIDLVINYDVPHDGEDYVHRVGR
                     TARAERNGTALTLINPRDQRKFAHIERLLEKEVPKLPLPPELGPGPEWKPFERREGVG
                     GHKGGQKPYRGGKGKGGGPHRGNPRPQGGGKPAAS"
     gene            complement(1479..2513)
                     /locus_tag="VLL95_02705"
     CDS             complement(1479..2513)
                     /locus_tag="VLL95_02705"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HSR37800.1"
                     /translation="MSTDVAAAPKMTAKDFATDQEVRWCPGCGDYSILAQVQRVMPDL
                     GIPRENIAIISGIGCSSRFPYYMNTYGMHSIHGRATAIASGLKASRPELSVWIVTGDG
                     DSLSIGGNHTIHLLRRNLDVNIMLFNNQIYGLTKGQYSPTSEEHKITKSTPMGSIDHP
                     FNPAALALGADATFVGRSMDRDPKHLQEMLKRAHGHKGTSFLEIYQNCNIFNDGAFEI
                     FTEKGTKADEALFLEHGKPMIFGAEKNKGVRLNGFTPEVVTLGEGYSADDLWIHDERD
                     LYKAQILVRLFDDPHKPNHLPRPFGVFYQTDRPCYEDVMAMQIEEAIAKRGKGSLGKL
                     LRGNETWEIH"
     gene            2573..2758
                     /locus_tag="VLL95_02710"
     CDS             2573..2758
                     /locus_tag="VLL95_02710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37801.1"
                     /translation="MSSCLIVGATLNFKQILTMADTVNKEPARNWGKTLFDFFMLFLA
                     VTLGFLADSYRDKQEER"
     gene            2777..3343
                     /locus_tag="VLL95_02715"
     CDS             2777..3343
                     /locus_tag="VLL95_02715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37802.1"
                     /translation="MELADDLGDDSASFADALSRRALRTEKLEKLFKVLAGNQSVSND
                     SLYKLVSYADYLPQFKSHRGTYEQLTNAGYLNYFDKKIASQLTDYYVACNQLFDMQTI
                     ERQVLLDRLIPFLHLHFHTENFVSWRREAVFAESTALREWDDAAVWQLHNLVNQLQTE
                     NEELMTHFKKLQTTATQLRIGLVASEFK"
     gene            complement(3440..>3729)
                     /locus_tag="VLL95_02720"
     CDS             complement(3440..>3729)
                     /locus_tag="VLL95_02720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37803.1"
                     /translation="ESLGRQLNWLEKWQLKRMEKRMKKGKSGGLFSERDELSEGFQAL
                     PFFGSLLTFGIVYFVMLFTAQDANALRWALWGGLLAVTIVTVIELIGLGAY"
BASE COUNT          799 a          981 c          989 g          960 t
ORIGIN      
        1 ctgcattttc ctatgggtca cgcaatgcga cactttgatg gaagttgtct tttatctcag
       61 gaagcagccg gcttccctcc accttgtggt ctcggatttc cgcggtgtgg tcctccaccc
      121 tttcctttgc caccccggta gggtttttgg ccgcctttgt gcccaccgac accttcgcgg
      181 cgctcaaagg gtttccattc cggtccgggg cccagttcgg gcggcagcgg cagtttgggc
      241 acttccttct ccagcagtct ttcgatatgc gcaaacttgc gctggtccct ggggttgatg
      301 agggtaaggg ccgtgccatt cctttcggca cgggcagtgc ggcctacacg gtgcacatag
      361 tcttcgccgt cgtggggcac atcgtagttg atcacgagat caatgatatc gatgtcgatg
      421 ccgcggctca ggatatcggt ggctaccagg atgcgggtct tttcgttgcg ataatccagc
      481 aacacttgtt cgcgttcggt ttgctccagg tcgctgtgaa tttccgctac tttcaggtgg
      541 gccttcttca ggtcgaaggt caggcgcttc acactttcct tgctgctgca aaacacgatg
      601 gccagccgga aaggattggt gcgcaagagt tcagtcacca gctttatttt ttgctcgtcg
      661 tacaccacaa aggcaccctg cctgatcttt tccggcggct tgctgatggc aatgctcacc
      721 tcggcaggat catgcaaaat cttcttggcc agttcgcgga tcttgggcgg catggtggca
      781 ctgaacaaca ggttctgtct ttccttgggc aggtagttga tgatgcgcag gatgtcgccg
      841 tgaaagccca tgtcgagcat gcggtcggct tcgtcgagca ccaggtactt caggccttgc
      901 agtttcacat aacccatgtt caggtgggct atcatgcggc cgggcgtgca tatcacgatg
      961 tcggcacctg tgctgagcgc ctttttttcc tgggtaaaga gatcgccgtc gccgccaccg
     1021 tacacgggta tgccaccgat gtcggtgaaa tagctcatgc cttccagcgc ctggctgatc
     1081 tgcacggcca gttcacgggt gggcacaatc accaaacagt tgaccgaatg atggtcgcgg
     1141 ggttctgtca gcagtttgtg aatgatgggc agtaaaaagg cggcggtttt gccggtgcct
     1201 gtttgggcgc tggcaatcag gtcgcggcct tccatgatca caggtatcac ctgctcctgc
     1261 accggcgtgg ctgttttgta gcccattgat tcgatgctat cctgcaggcg ggaatcgaag
     1321 ttgaattcgg agaacgtcac ttatctgaat gatctgtttt gtgtaagaaa tgtctgtcgc
     1381 ttgtcgatct ataaaaaatg aagctacacg cttgttgtgt agctccaacg tatgtctgtt
     1441 atgtttctgt caactgtcaa ccatctgccg tccactcatt aatgaatttc ccatgtctca
     1501 ttgccgcgca gcaacttgcc caggctgcct ttgccacgct tggcaatggc ttcttcaatt
     1561 tgcatggcca tcacatcctc gtagcagggg cgatcggttt ggtagaacac gccaaaagga
     1621 cggggcaggt ggttgggctt atgcggatcg tcgaacaaac gaaccaggat ctgtgctttg
     1681 tacaggtctc tttcatcatg tatccacagg tcgtcggcgc tgtagccttc gcccagtgtc
     1741 accacttcgg gggtaaatcc gttcaggcga acacccttgt tcttttcggc gccaaagatc
     1801 atgggcttgc catgttccag gaaaagtgct tcgtcggcct tggtgccttt ttcagtgaaa
     1861 atttcaaagg cgccgtcgtt gaagatgttg cagttctggt agatctccag gaagctggtg
     1921 cccttgtggc catgagcccg cttcagcatt tcctgcaggt gcttgggatc gcggtccatg
     1981 ctgcggccta caaaagtggc atcggctccc aacgccagcg cagccgggtt aaaggggtgg
     2041 tcgatgctgc ccatcggggt actcttggtg atcttgtgtt cttcagaggt aggagaatac
     2101 tgtcccttgg tcagaccata gatctggttg ttgaacagca taatgttcac atccaggttg
     2161 cggcgcaaca ggtgaatggt atggttgccg ccaatgctca ggctgtcgcc gtcgccggtc
     2221 acaatccaca cactcagttc ggggcggctg gctttcagcc cgctggctat ggcggtggca
     2281 cggccgtgga tgctgtgcat gccataggtg ttcatgtaat aagggaagcg gctgctgcaa
     2341 ccaatgccgc tgatgatggc aatattttca cgggggattc ccaggtcggg cattaccctt
     2401 tgtacctgtg ccaggatgct gtaatcgcca cagccggggc accagcgtac ttcctggtcg
     2461 gtggcaaaat ctttggcggt cattttggga gcggcagcta cgtcagtact cattcgaaca
     2521 atacgttttt ttggatagct gcgaatttac cggataaaca catattagac acatgtcttc
     2581 ctgcctgatt gtgggcgcaa cccttaattt caaacaaatt cttacaatgg ccgacacggt
     2641 gaacaaggaa ccagccagaa attggggcaa aacgctgttt gattttttta tgcttttcct
     2701 ggcggtaacc ctggggttcc tggccgatag ctaccgcgac aagcaggagg aacgctaact
     2761 ggcccaatcg ctggcggtgg aactggccga tgacctgggc gacgattcgg cctcctttgc
     2821 cgatgccctg tcgaggcggg ccttgcgaac cgaaaagctg gaaaaacttt ttaaggtgct
     2881 tgccggcaac caatcagtat ccaatgattc gctctacaaa ttggtgagct atgccgacta
     2941 tctgccccag ttcaaatcgc accggggcac ctatgagcaa ctgaccaatg caggctacct
     3001 gaactatttc gacaaaaaaa tagccagtca actgactgat tattacgtgg cctgcaacca
     3061 actcttcgat atgcaaacca tcgagcggca ggtattgctc gaccgcctca ttcccttcct
     3121 gcaccttcac tttcataccg aaaactttgt ttcgtggagg agggaagctg tattcgcaga
     3181 gtcgaccgct ttaagagaat gggacgatgc cgcggtttgg cagctgcaca acctggtcaa
     3241 tcaattgcaa actgagaatg aggaattgat gacccatttt aagaagctac aaacaactgc
     3301 cacacaatta agaattggcc tggttgcgtc ggagtttaaa tagaaatggg cgactgaaag
     3361 tccgtcgccc attatttgcc aatcagcatt ggccgttcat actagtcaaa cccatatgtt
     3421 ctgcaagcat aagtcttgct tagtaggcac caaggccaat gagttcaatc actgtaacga
     3481 tcgtcaccgc taaaaggcca ccccaaaggg cccatcgcaa agcattggca tcctgcgcag
     3541 taaatagcat aacaaaataa acaatgccaa acgtgagcag ggatccgaaa aagggaagcg
     3601 cctgaaagcc ttcgctcaat tcatcccgtt cggaaaagag gccaccggat tttccttttt
     3661 tcatccgctt ttccatcctt ttcagttgcc atttttcgag ccagttcaat tgccgaccca
     3721 agctttctt
//
LOCUS       DATIQF010000173         2627 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_139617,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000173 DATIQF010000000
VERSION     DATIQF010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2627
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139617"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..1298
                     /gene="pcaF"
                     /locus_tag="VLL95_02725"
     CDS             99..1298
                     /gene="pcaF"
                     /locus_tag="VLL95_02725"
                     /EC_number="2.3.1.174"
                     /inference="COORDINATES: protein motif:HMM:TIGR02430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0019619 - 3,4-dihydroxybenzoate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoadipyl-CoA thiolase"
                     /protein_id="HSR37804.1"
                     /translation="MSVYVVDAIRTPIGKYAGALSSVRPDDLLAMAIKALLERNPSVD
                     PTVIEDVIAGAANQSGEDNRNVARMAALLSGLPSSVAGTTVNRLCASGLQAIMDAARA
                     IHHGDGDLYIAGGVESMSRAPFVMAKSEQAFGRAPEIFDTTLGWRFVNSKLSAMYHPY
                     SMGETAENVARQWKISREDQDAFALASQQKYFAAKAAGKWEAEIVAVPVAQKKGDPIL
                     VKDDEHPRMTSPEQLAALKAAFAKDGTVTAGNSSGINDGAAALLLANQSAVDRFNLQP
                     RARLVSMAVAGVDPSIMGIGPVPAVKKALQRAGLQLQDIDLVELNEAFAAQALACIND
                     LGLDPEKVNVNGGAIALGHPLGCSGARISTTLLYEMARRGARYGIATMCVGVGQGAAI
                     VFENLDR"
     gene            1367..1738
                     /locus_tag="VLL95_02730"
     CDS             1367..1738
                     /locus_tag="VLL95_02730"
                     /inference="COORDINATES: protein motif:HMM:NF023380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3471 domain-containing protein"
                     /protein_id="HSR37805.1"
                     /translation="MKKTLLIVFATVFATVLVNAQADSTLKEYTGKYIFPAGSPTPEA
                     TISLDGGTMYIASSMGSATLAKVEGDVFSIVEYNGTATFKRNEQGKIVSVLVAVAGME
                     LVGTKEETALYWWRPNLLFKF"
     gene            1825..>2627
                     /locus_tag="VLL95_02735"
     CDS             1825..>2627
                     /locus_tag="VLL95_02735"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSR37806.1"
                     /translation="MTKNDSSKAWAGVIMVLLSAFLFSCKAVLAKLVYRQATMSVIEL
                     LVMRMLYSLPFYVAMLGWQWKKYRQEPVGLRRSAFFPRKLLFPTIFMGLLGYYISSFF
                     DFWGLKFISAGLERVVLFSYPTLVVLLSALLFRQKIYRYQVGALLLSYVGIAIAFAAD
                     LKQETGSSVWLGGFLIFVCATTFSMYVIFSGRLIPQIGVGLFTAVAMLSATAGIVLHF
                     LLTGNHLQQLLAFHWQIQVLMALMGVFATVVPSFFVSSGIKLIGSSNVA"
BASE COUNT          588 a          612 c          724 g          703 t
ORIGIN      
        1 aggtcttttg cgccggcaaa atgccagtca ccttggagtt tactggattc gggatgcagc
       61 aacaagccta tttttgacca ctccaaagct tgcctgatat gtctgtttac gttgttgatg
      121 ccatccgcac tcccattgga aaatatgccg gtgccctgtc ttctgttcgc cctgatgacc
      181 ttttggccat ggcgatcaaa gcattactgg agcgaaatcc ttctgttgat cctactgtaa
      241 ttgaagatgt gattgccggt gctgccaacc aaagtggaga agacaaccgg aacgtggcac
      301 gcatggctgc tttgctttct ggtttgccct ccagcgtggc aggcactacg gtcaaccggc
      361 tctgtgcttc cggcttgcaa gccatcatgg atgcggcacg tgccattcac cacggcgatg
      421 gtgacctcta catagcaggc ggcgtagaaa gcatgagccg ggcgcctttt gtgatggcca
      481 agagtgaaca ggcttttggg cgggcccccg aaatttttga tactaccctc ggctggcgtt
      541 ttgtcaatag caaattatcg gccatgtacc acccgtacag catgggcgag acggcagaga
      601 atgtggcgag gcaatggaag ataagccggg aagaccagga cgcctttgcg ctggcatcac
      661 agcaaaaata ttttgccgcc aaagcggctg gcaaatggga ggcggaaata gtggctgttc
      721 cggtagccca aaagaagggc gatccaatat tggtaaagga tgatgagcac ccccgcatga
      781 ccagccccga acaactggca gctttgaaag cggcttttgc caaagatgga accgtgacag
      841 ctggtaactc aagcggcatc aatgatggtg ccgccgcact gttgctggcc aaccaatcag
      901 cggtggacag gttcaacctt caaccgaggg ctcgccttgt gagcatggcg gtagccggcg
      961 tagatccttc catcatgggc attggcccgg tgccggctgt gaagaaagct ttgcagcggg
     1021 cagggcttca actgcaggat atcgaccttg tagaattgaa tgaggctttt gctgcgcagg
     1081 cactggcctg catcaacgat ttgggcctcg atcccgaaaa ggtgaatgta aacggtggag
     1141 ccattgcctt gggtcatcct ttgggatgca gcggcgcccg aataagtacc acccttttgt
     1201 atgaaatggc acgaagaggt gcccggtatg gcatagccac catgtgcgtg ggggtggggc
     1261 agggagcggc cattgtgttc gaaaacctgg acaggtgacc attcttattg aacggaattt
     1321 ttcaaattcg gaaactgctg tatttttcaa aaaatttcat cgctacatga aaaagactct
     1381 gctcatcgtt tttgcaacgg tttttgctac tgtgctggta aatgcgcaag ctgacagtac
     1441 cctgaaggaa tacaccggta aatacatttt ccctgcgggc agtcctacac ctgaggctac
     1501 aatcagcctg gatggaggaa ccatgtacat tgcttcttcc atgggttcgg ccacattggc
     1561 caaagtggaa ggcgatgtat tcagtattgt agaatacaat ggtacagcca cttttaaacg
     1621 caatgaacag ggtaaaatag ttagtgtgtt ggtagcggtg gccggtatgg aattggtggg
     1681 caccaaggag gaaacggctc tgtattggtg gcgacccaac ctgctcttca agttttgaaa
     1741 taatttaaat ggataggaat gaggcttcgg cctcattttt tttgcagcag ggcttggcag
     1801 tactttcgca cccaaatttc agggttgaca aaaaacgatt cttcgaaggc atgggcaggg
     1861 gtgatcatgg tgttgctttc cgcatttctc ttttcatgca aagcagtgct ggccaaactg
     1921 gtgtatcggc aggcgaccat gtcggtcatt gaactgctgg tgatgcgcat gctctattca
     1981 ttgccttttt atgtggccat gcttggctgg cagtggaaga agtaccggca ggaacccgtt
     2041 gggctcaggc gttcggcgtt ttttccacgc aaactgttgt tcccaaccat ttttatgggt
     2101 ctgcttggtt attacatcag cagttttttt gatttctggg gattgaagtt catttctgcc
     2161 ggattggaaa gggtcgtgtt gttttcttac cccacattgg tggtgctgct cagtgcgctg
     2221 ctgttcaggc aaaaaatcta tcgctaccag gtgggggcat tgttgctttc ctatgttggt
     2281 attgccattg cttttgccgc agacctgaag caggaaaccg gttccagtgt ttggctggga
     2341 ggctttctca tattcgtatg cgccaccacc ttttcgatgt acgtcatctt cagtggcagg
     2401 ctcattccac aaataggtgt tggattgttt actgcagtgg ccatgctgag cgccactgcc
     2461 ggcattgtgc tacactttct gcttacgggg aatcatttgc agcagttact cgcctttcat
     2521 tggcaaatac aggtgctcat ggcattgatg ggtgtttttg ccacggtagt gccttctttt
     2581 tttgtttcct caggcatcaa attgattggc agcagcaatg tggccat
//
LOCUS       DATIQF010000174         2551 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_154774,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000174 DATIQF010000000
VERSION     DATIQF010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2551
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154774"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..1001)
                     /locus_tag="VLL95_02740"
                     /pseudo
     CDS             complement(1..1001)
                     /locus_tag="VLL95_02740"
                     /inference="COORDINATES: protein motif:HMM:NF012731.4"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
     gene            1085..2272
                     /locus_tag="VLL95_02745"
     CDS             1085..2272
                     /locus_tag="VLL95_02745"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSR37807.1"
                     /translation="MSYVLKLCGWYPSENDVFSGDFVQRHAQSIATQIPVVAVFATKE
                     ANRRTGGIRMEKTIVGQLEEYRFYYPCSWWFDKVISQWYYLKVIKRFIPALLREKGEP
                     AAMHVNIAWKAAIWAGYLRRRFDWPMVVTENSTEYQPGALFNIRNQNRWRQRLTAQLF
                     QNSRSFISVSEQLAKVVQQLYGPLSWTVVPNAVNTNLFFPVEKAVREKFRIIHISTLT
                     HQKNPEGLLQVFGQLLDRSPDLEIEILAPDTALLKQWLQSSVHSNRIIFTGLVPYHQV
                     AQRLQQADLLVLFSRYENLPCVILEALCCGVPVVSTDVGGVPEVISEANGKLVGNEDE
                     KGLLNAILEVKENYHQYDREAIAEEACTQFNFETIGKQFLTAYQKAGISFPTRIVETT
                     KES"
     gene            2269..>2551
                     /locus_tag="VLL95_02750"
     CDS             2269..>2551
                     /locus_tag="VLL95_02750"
                     /inference="COORDINATES: protein motif:HMM:NF013468.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HSR37808.1"
                     /translation="MITEIGTDLEKAAALLRMGELVAIPTETVYGLAGNALNENAVLK
                     IFKAKERPHFNPLIIHLPSWSFASKYAREIPAEIDLLARHFTPGPITFLV"
BASE COUNT          636 a          595 c          612 g          708 t
ORIGIN      
        1 agttcagtta acttgtataa ctggttgatt attacttgtg gaacagcatc cctctttagg
       61 tccaaaacta tccgcgtacc ctctttcagg ttgtattcgt ttttgacgtt agaaatgcct
      121 tcgatcactt tttcattcac caactgcccg atcttatcgg tcagtgtgtc gcggtttacc
      181 tggtaaggca cctcgctgat cacgattttg tcgcggcctt tgtcgtcaga ttctaccgtg
      241 gcctttcctc ttagtaccac ccttcctcag ccagtgagga atccttgctt gatgccatca
      301 aaaccgtgaa ttacacctcc ggtggggaaa tcgggagctt ttacgtactt gatcagttct
      361 tcaatggtga tctctttatt ctcgatatag gcgatgcatc cgtccaccac ctcactaagg
      421 ttgtgaggca tcatattggt ggccatacca acggcaatgc cgctggcacc attcaccagc
      481 aactgaggaa tgcgggtcgg caatacagta ggttcctcca ggctgtcatc aaagttgagt
      541 tgaaaatcaa cggtctcctt ctcgatgtcg gtcagcatgg cttcggcaat gcgttgcaag
      601 cgggcttcag tataacgcat ggccgccggc gggtcaccat cctggtttcc gaagttaccc
      661 tgaccatcga ccagggtgta ccgcatattc caatcctggg ccatgcgcac catggtgtca
      721 tagatcgaag agtcaccgtg tgggtgatac ttacccatca cctctcccac aatacgggca
      781 cttttcttat aaggcttccc ataatccagg cccaactcat tcatggagta cagtaccctg
      841 cgatgcacgg gcttgagacc atcccgtaca tcaggcaaag cacggccaac aattaccgac
      901 atagaatagt ctatgtaggc cgttttcatt tgttcctcga tgttgacctg aattattctg
      961 ttgaaatcgt tcgtttcctg gggcaaattt tgttcttcca tactttttct accaagtttg
     1021 caaatgtagt cttttgaccc tttgaaacgg ggtgcaaatg attgaatgtt aaaaactaat
     1081 cagcatgtct tatgtcctca aattgtgcgg ctggtatcca tcggaaaacg atgttttcag
     1141 tggcgatttt gtgcagcgac atgcgcagtc cattgctacc caaattcccg tggtggcggt
     1201 ttttgcaaca aaggaggcaa atcgtcgaac cggtggcatc cggatggaaa aaaccattgt
     1261 tggccaattg gaagaatacc ggttctacta tccctgttcg tggtggttcg acaaggttat
     1321 ttcgcagtgg tactacctga aagtgatcaa acgcttcatc ccggcattgt tgcgtgaaaa
     1381 gggagaaccg gccgcgatgc acgtgaatat tgcctggaag gctgccatct gggctggtta
     1441 cctgcgcagg cggtttgatt ggccaatggt ggtaacggaa aattcaactg aatatcaacc
     1501 tggtgcgcta tttaatatcc ggaaccagaa cagatggcgg caaaggttga cagcccaact
     1561 gtttcaaaat agcagaagct ttatttcggt ttcagagcaa ctggccaagg ttgtacagca
     1621 gttgtatgga cctttgtcat ggacagtagt gccgaatgct gtaaacacca atctcttttt
     1681 tcctgtggaa aaggcggttc gtgaaaaatt ccggatcatt catatctcaa cactcacgca
     1741 tcaaaaaaat ccggaaggct tgttgcaggt cttcggccaa ttgctggaca ggtcgcctga
     1801 tctggagatt gaaattcttg ctccggatac agcattacta aagcaatggc tgcagtcatc
     1861 agtgcattca aaccgcatta ttttcaccgg gcttgtaccc taccaccagg tggcgcagcg
     1921 tttgcagcag gctgatttgt tggtattgtt cagtcggtat gaaaatcttc cctgcgttat
     1981 cctggaggcg ttgtgttgcg gtgtgccggt ggtgtctact gatgtgggtg gtgtgcctga
     2041 agtgatcagc gaggcgaatg gcaagttggt cgggaacgaa gatgaaaagg gacttcttaa
     2101 tgctattttg gaggtgaagg aaaattatca ccagtatgac cgcgaagcca ttgctgaaga
     2161 ggcttgcact caattcaact ttgaaacaat tggaaagcaa tttctgacag catatcaaaa
     2221 ggcaggaatc tcatttccca caagaatagt ggaaacaact aaggaatcat gatcacagaa
     2281 attggaacag acctggagaa agctgccgcc ttgctgcgga tgggggaatt agtggccata
     2341 cctactgaaa cggtttatgg gttagcaggc aatgcattga atgaaaatgc tgttttgaaa
     2401 atcttcaaag ccaaagaaag accacatttc aatcctttga tcatccattt gccctcatgg
     2461 tcatttgcat ccaaatacgc cagggaaatt cctgcggaaa tcgatttgct ggctcgtcat
     2521 tttacgccgg gtcccatcac ttttttagtt c
//
LOCUS       DATIQF010000175         2773 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_291534,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000175 DATIQF010000000
VERSION     DATIQF010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2773
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291534"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(95..1039)
                     /locus_tag="VLL95_02755"
     CDS             complement(95..1039)
                     /locus_tag="VLL95_02755"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HSR37809.1"
                     /translation="MSRSWLPYFALALTSLVWGTTWVASKIGISSGVHPLFFSAIRQT
                     LGGLCYIAFFVAVGKAEWPTPRQWGYLVLMAFLLFVSSNGLTTWGIKYINSGLGAIIG
                     AIFPLFVAIIDLVRGSKDKPNILSTVGLVLGFAGVAIIFYEHLADFANADFSFGIGLS
                     MIAAFTWAVGTVVTTNKSVQLNRYYALGWQMFIAGIILAIISSASGVAMPLQQVPAQT
                     WYALAYMVTFGSIITFGAFIYSLQHLPTTLASIYAYINPMVAVVLGHFVLGESWSLFL
                     LIGALVTVAGVYMVNSGFRKAAAGEEITWRSLLFGRRA"
     gene            complement(1099..1941)
                     /locus_tag="VLL95_02760"
     CDS             complement(1099..1941)
                     /locus_tag="VLL95_02760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37810.1"
                     /translation="MEELKGLGRSEYWPQVDPEKFVRNLHENLANPERLYQGNRTNFC
                     GYASLTYLFLKRDPLGYATSLVELYKEGNTRCFKAVLQPSVDVRQEAGVMMDRRHLND
                     QHADQLWFLTLADKFKAYLNYWDDKFQTGKENTIWAAVTFNKFNRMVKEILGITTSSD
                     YKPLVRGHTKTLVERLERGLKEGEIVLYVDKNFKRNTWKEYLLPSHFVVLNDLQRLNA
                     DSLTLTYWEYGSEKQMPIRIKVLYSSLRGYSIIRNGHPESEKPFHASASEALGIEVLL
                     RQKP"
     gene            complement(2318..>2773)
                     /locus_tag="VLL95_02765"
     CDS             complement(2318..>2773)
                     /locus_tag="VLL95_02765"
                     /inference="COORDINATES: protein motif:HMM:NF015126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HSR37811.1"
                     /translation="IGFNVRPNQQAARLAENEGIEIKQYSVIYNAINDVKAAMEGLLE
                     PKVEEKEVASVEIREVFKFDKATVAGCYVTSGKIKRDAKVRLYRDGVLIYPRTEGGFA
                     ELASLKRYKDDVKEVLNGMECGLTIKNFADIQVGDTVVAIEEEEVKRTL"
BASE COUNT          762 a          696 c          652 g          663 t
ORIGIN      
        1 cctcaaggcc atttataaat acctccaaac actgaaggcg gttgaaaaag acaatgggcc
       61 cacctatgta aaaggcaaga gttagtgcat agcctcaggc acgtcgacca aacaacaggc
      121 tgcgccaggt aatttcttcc ccggcagccg ccttgcgaaa accgctgttt accatgtaaa
      181 cgccggctac ggtaaccaat gcgccaatca acaggaacaa gctccaagat tcgcccaaga
      241 cgaaatgccc cagcaccaca gctaccattg ggttgatata agcgtaaatg gatgccagcg
      301 tggttggcag gtgctgtaag gaataaataa aggcgccaaa agtgatgatg gacccgaagg
      361 tgaccatata ggccagcgca taccaggttt gggcaggcac ctgttgcaag ggcatggcca
      421 ctcccgacgc tgatgaaata atggccagga tgatgccggc aatgaacatt tgccaaccca
      481 gggcatagta gcgattcaat tgcaccgatt tgttggtggt aaccactgtg cccaccgccc
      541 aggtgaaggc agcaatcatc gacaggccaa taccaaaact gaaatcggca ttggcaaaat
      601 cggccaggtg ttcatagaag atgatggcca caccggcaaa gccaagaacc agaccaacgg
      661 tagaaaggat attgggcttg tctttgctgc cacgaaccaa atcgatgatg gctacaaaca
      721 aaggaaagat ggccccaatg atggcgccca gtccgctgtt gatgtactta atgccccagg
      781 tagtaagacc attgctgctc acaaacaaaa ggaaagccat caggacgagg tagccccact
      841 ggcgtggtgt tggccactcc gcttttccta cagctacaaa aaacgcgatg taacagaggc
      901 cacccaatgt ttgacgtata gccgaaaaaa acaatggatg tacgccagag ctgatgccaa
      961 ttttagaagc cacccaggtg gttccccaaa caagggaagt aagcgctaat gcaaaatatg
     1021 gtaaccagct tctgctcatg aaggcgcaaa ggtaagtgaa ccggcatgct ggccgtttat
     1081 tgaaaactac aattcacatc agggcttttg tcgcagtaag acctctattc ctaatgcctc
     1141 gctggctgaa gcgtgaaaag gcttttcaga ctcaggatga ccatttctta ttatgctata
     1201 accacgaagc gaagagtaga gcactttgat acgaataggc atttgttttt ccgaaccata
     1261 ctcccaataa gtcaaagtca ggctatccgc attcaggcgc tgcaaatcgt tgagcactac
     1321 aaaatgactg ggcaacaggt attctttcca ggtgtttcgc ttgaaattct tgtcgacata
     1381 gagaacaatt tcaccttcct tgagaccacg ttccaggcgc tctacaagtg tttttgtatg
     1441 tcccctcacc aaaggtttat aatcgctgga agtggttatt cccaggatct ctttcaccat
     1501 tcggttgaac ttattgaatg taacggcggc ccaaatggtg ttttcctttc cggtttgaaa
     1561 cttatcatcc caatagttca ggtaagcttt gaatttgtct gccagcgtca gaaaccaaag
     1621 ttgatcggca tgctgatcgt tcaaatgccg gcggtccatc atcacgcctg cctcctgtcg
     1681 cacatccaca ctgggttgaa gaaccgcctt gaagcaacgt gtatttcctt ctttgtataa
     1741 ttcaaccagg gaagtggcat atccgagagg atcgcgtttt aaaaaaaggt aggtgagtga
     1801 tgcatacccg caaaagttgg tacggttgcc ctggtatagc cgctcgggat tggccaaatt
     1861 ttcatgaagg ttgcgcacaa atttttccgg gtccacctgc ggccagtatt cgctcctacc
     1921 aagtcccttt aattcttcca cgaatgcaag ggcttgctca cgtgtggaac gtgcagcgat
     1981 atcgtgatag gaatactgag agcatgtaat agtgggagcg agaattatta ccaaacaaga
     2041 acaaaccaat atgcgagtga actcagccat ggcaaagggt tccacttaaa gggaaacagg
     2101 caattcgcca gggatgggcg tgccagctac cattctataa aggtactcaa tagggctctt
     2161 ccgctttact ctgctcctat ttatgtttta gccaccttcc tccttaagcg aggaggacaa
     2221 gaattgagaa aatcccttcc gtaaaaagag gggctaaaaa aaatccatcc ggcctggcca
     2281 gatggatttt ggtataagaa cgagaataat atcgatgtta cagcgtccgc ttcacttctt
     2341 cttcttcgat ggctactacg gtgtcgccaa cctggatatc tgcgaagttc ttgatggtca
     2401 aaccacactc catgccattc agcacttcct tcacatcatc cttgtaacgc ttcaggctgg
     2461 ccagttcggc aaagccgcct tcggtacgag gatagatcaa tactccatcg cggtacaaac
     2521 gaaccttggc gtcgcgtttg attttgcccg aagtaacata acaaccggcc accgtggcct
     2581 tgtcgaactt gaatacttcg cggatctcca ccgaagccac ttctttctct tccaccttcg
     2641 gttccagcag gccttccatg gctgccttca catcgttgat ggcgttatag atgacagagt
     2701 attgcttgat ctcgatgcct tcattttcag ccaggcgggc agcctgctgg ttggggcgta
     2761 cgttgaagcc tat
//
LOCUS       DATIQF010000176         3533 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_230789,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000176 DATIQF010000000
VERSION     DATIQF010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3533
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230789"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..600)
                     /locus_tag="VLL95_02770"
     CDS             complement(<1..600)
                     /locus_tag="VLL95_02770"
                     /inference="COORDINATES: protein motif:HMM:NF013499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold nucleic acid binding domain-containing
                     protein"
                     /protein_id="HSR37812.1"
                     /translation="MAFNIRTKIKDLLATEPASQDVIVMGWVRTFRSNRFIALNDGST
                     INNIQVVVDFENTPEELLKRITTGACIRIGGQLVPSVGSGQKVEIKASQIDILGDSDP
                     EKFPLQPKKHSLEFLREIAHLRMRTNTFGAVFRVRNTLASATHEFFQGRGFVYWHSPI
                     ITASDAEGAGEMFRVTTLPIDGSAPRLEDGSIDFREDFFG"
     gene            1119..3233
                     /locus_tag="VLL95_02775"
     CDS             1119..3233
                     /locus_tag="VLL95_02775"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HSR37813.1"
                     /translation="MRKIYALLAMLGLFTVASAQINLPVDFESNSETYTFTNFDGGNA
                     TRIDNPQSGGINTSAKVVRMVKGPGGQAWGGSWFALSGPIDFSTKKIMRMKVFSPRVG
                     AKVLLKVENASVGSQAIEINATTTVANQWEDLSFDFGSSPLVNTYQYSKVVVIFELGT
                     VGDGSANFTFLFDDIRQETSSNPAPTFPSLPVDFESDAITFTFESFGGGATATRVDNP
                     QKNGINTSNKTGRVVKNGGEPWSGNWFMLANNIDFSTNKIFKMKVFAPAVGTKVLFKV
                     ENVSDGAVAAERNAVTTKANEWEDLSFDFQNIDLSNNKSYRKIVFIFDIDKVGTGSAS
                     STYLFDDIRQVASSGGGLSQMDLPVTFNDPNVDYGLIGFGGADNSTIVTDPTDPNNKV
                     AKVIKSATAELWAGTTVTAPAQQGFKNKIPFSAGNTKMNVRVWSPDAGIKVRLKVEDH
                     TDPTKSVETEATTTVANGWQDLTFDFSNHAGGTSPINLAYNYTKASIFFNFGTTGATA
                     GEKTYYFDNMVFGVLPLPVKLMYFDAAKSGNAVVLQWATSSEVSSRDFVVERRSAAGT
                     WTEIANVKAAGNSQTVRRYTITDKMPLQGTGYYRLRQTDIDGNVTHSEIKAVQFDRNR
                     STSVLLYPNPAKDRIALVTDAFDGPVRYEIISASGASVLNGTIANPQAETGINISVLK
                     SGNYFIKLTDGNSSATTRFVVR"
BASE COUNT          911 a          889 c          878 g          855 t
ORIGIN      
        1 gccaaagaaa tcctcgcgga agtcgatact gccgtcttcg aggcggggag cgctgccatc
       61 aatgggcagg gtggtgacgc gaaacatttc gccggcccct tccgcatcgc tggcggtaat
      121 gatggggctg tgccagtata caaaaccacg gccctggaag aattcatgcg tggcgctggc
      181 cagggtattg cgcacccgga acacagcgcc aaaggtgttg gtgcgcatgc gcaggtgggc
      241 tatctcccgc aggaattcga ggctgtgctt tttgggctgc agcgggaatt tttcggggtc
      301 gctgtcgccg aggatatcga tctgcgaggc cttgatctct actttctggc cgctgcccac
      361 gctgggtacc agctggccgc caatacggat gcaggcaccg gtagtgatcc gcttcagcag
      421 ttcttcgggc gtattctcga aatcaactac gacctgaata ttgttgatgg tgctgccatc
      481 gttgagggca ataaagcggt tgctgcgaaa ggtgcgcacc cagcccatta ctattacatc
      541 ctggctggca ggttctgttg ccagcaggtc cttgatcttg gttcgaatgt tgaaagccat
      601 attgcttgcc gtttttgccg cagcatgttg tactgcggaa tcagtgagtg acacctgcct
      661 gcctgcaggc aacgatgccg ggaaatccac caaaagctgg ccactttaaa gaaaaaagcc
      721 ccatttgggg cggcaaatat agctgaatgg ccacaaccta ttggtttgag cgggggcaat
      781 aaatcagttt ggcggcggaa agcatgaaat gactttgttc catgcggccg caagcctccc
      841 aatctaaaat ggctcccgtg ctgtggcata cccccaggaa aacacttacc aaggagggtg
      901 catctgtccc ataacctggc ccataaaagg catgatgtag taatgatgta gtgcaaaatc
      961 cagcattttc aagggtttcg gcaattgtga tgtagccaag ttgtaggccg gagttaggtg
     1021 gctgaggaga agcttaatta gctttggaat cctggctgag gtgtggaagc ccgaaagccg
     1081 gtattcatca aattacttcc aaaacaaaac tgtttgctat gcgaaaaatc tacgctctat
     1141 tggccatgct tgggcttttt acagtagcct cggcccaaat taacctgcca gtcgacttcg
     1201 agtcgaattc tgaaacctac acttttacca atttcgatgg gggcaatgcc acccgaatcg
     1261 acaacccgca gtctggcggc atcaacacca gtgccaaagt agttcgcatg gtgaaaggcc
     1321 ccggcggaca ggcttggggt ggtagttggt ttgctctttc cggacctatt gatttttcca
     1381 cgaagaaaat catgcggatg aaagtttttt caccccgcgt tggggctaaa gtgcttctca
     1441 aagtagaaaa tgcctcggtt ggcagtcagg ctattgagat taatgccact accacggtag
     1501 ccaatcaatg ggaagatctt tcttttgatt ttggctcaag ccctcttgtc aatacctacc
     1561 aatacagcaa ggtggtagtg atttttgaac tgggcaccgt tggagatggc tctgccaact
     1621 tcaccttcct gtttgatgac atccgccagg agacaagcag caaccctgct ccaactttcc
     1681 ccagtctgcc ggttgatttc gaatctgacg ccatcacctt cacattcgaa agttttggag
     1741 gcggggcaac tgccaccagg gtagacaacc cccaaaagaa tggaatcaat acttcaaaca
     1801 aaactggccg ggtagtaaag aatggcggag aaccctggag tggcaactgg tttatgcttg
     1861 ccaataacat tgacttcagc accaacaaga tcttcaaaat gaaggtgttt gcccccgccg
     1921 ttggaacgaa agttcttttt aaagttgaaa atgtatcgga cggagccgta gcagccgaaa
     1981 gaaatgctgt tacaacgaag gccaatgaat gggaagatct gtcatttgat tttcagaaca
     2041 tcgatttgag caataataaa tcttatcgaa aaattgtttt cattttcgat atagacaagg
     2101 tgggcactgg ttctgccagc tccacctacc tgttcgacga cattcgccag gtggcatcct
     2161 ccggaggagg tctcagtcaa atggacctgc cagtaacctt taatgatcct aatgtggatt
     2221 atggactgat tggatttggc ggcgccgata attcaaccat tgtaacggac cccactgacc
     2281 cgaataataa ggttgcgaag gtgatcaaga gtgccacggc agaactgtgg gcaggcacca
     2341 ccgttaccgc tccggctcaa caaggcttca agaataaaat accatttagc gccggcaaca
     2401 ccaagatgaa cgttcgcgtt tggtcgcccg atgccggcat caaagttcgc ctgaaagtgg
     2461 aagatcatac tgaccccacc aaatctgttg aaacagaggc taccactacc gtagccaatg
     2521 gttggcagga cctcactttt gatttcagca accatgccgg tggcacatcg cctatcaatc
     2581 ttgcctataa ctacaccaag gcttctatct tcttcaactt tggcactacc ggagctacgg
     2641 caggtgaaaa gacctactac ttcgacaaca tggtgtttgg cgtactgccg cttcctgtga
     2701 agctgatgta cttcgatgcc gccaagtcgg gcaatgccgt ggtattgcag tgggctactt
     2761 ccagcgaagt atctagccgc gactttgtgg ttgagcgccg cagcgctgca ggtacctgga
     2821 cagaaattgc caatgtgaaa gctgccggca attcacaaac cgtgcgtcgc tacaccatta
     2881 ccgataagat gccgctgcag ggaaccggat attaccgcct gcgtcaaacc gatatcgatg
     2941 gcaacgtgac ccattcagaa atcaaggccg tacagttcga ccggaatcgc agcacttctg
     3001 tattgcttta ccccaatccg gccaaagacc gaatcgcgtt ggtgactgac gcctttgatg
     3061 gtccggtacg ttacgagatc atatcggcca gtggagccag tgtgctcaat ggcaccattg
     3121 ccaatccaca agcagaaacc ggtatcaata tcagcgtgct gaaatccggc aactacttca
     3181 tcaaactgac cgatggtaac tcgtctgcta caacacgttt tgtagtacga taattccatg
     3241 ggttagaaca caagaaatcc ccggcctgta cggggtcggg gatttcttct tttcacatga
     3301 attctttaag caaaaaagag agcaatcaaa tagaaaaacc tttcgacatt tcatgttcac
     3361 atcccatgtc gcgtcttgca tctacatggc tcctgtgaaa attcaagtgc gaaggaccat
     3421 aagctttcag tagtagcaaa caagcaacaa ttgccaatga acccggggcc aaccaccctc
     3481 ttcttaaact gctttttcac tgcatagttc actcgtaata tttctataag atg
//
LOCUS       DATIQF010000177         1777 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_124445,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000177 DATIQF010000000
VERSION     DATIQF010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124445"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1703)
                     /locus_tag="VLL95_02780"
     CDS             complement(<1..1703)
                     /locus_tag="VLL95_02780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37814.1"
                     /translation="MALMPALLGALIMLYNKKYWLGGALTAAFTAALVVNNHLQIIYY
                     MLIVVLFMTVAYVIKWIKQGEIKHMLLAGSIALGAAGVGALTSAVNLFTTYDYSKESM
                     RGGKANLLPLTDTSKGAAKATSSGLDAEYAFRWSYGKPETLSLLVPNVNGGASEGLGE
                     DSKFYETLMGAFQGGQVDQQTAQQLSRFGVAYWGDQPFTSGPVYLGAIICLLFALGMF
                     TTNNPHRWWALACSLLAVLMAWGHNFSAFNNFLFDYLPMYNKFRAPSMVLVIPQLLFA
                     MVGIIGLNELVFGNKSPEEKWKAVKFAGISTGVVLLLALLYYFSSDFRSGSEAETLKT
                     IAQSAPQMSEVVKSVVNAAGEDRRAMYMNDFVRSLAFVAAGFILLFAFTRNKVNVTIV
                     LAALLLLNAFDLLAVGRRYLNDDNFQDTENTEARSYVAATNQPLYNVLEQIRKDPDPH
                     FRVFNVTGDVFNDALTSAFVRSVGGYHAAKLSIYQDLIEHQLSSGSPNMQVLNMLDTK
                     YFIVPGQQGPMVQQNPMAFGAAWLVKHVNYVNDAAAEMKALSSTSLYDTAIVQQSFQT
                     G"
BASE COUNT          435 a          449 c          470 g          423 t
ORIGIN      
        1 atgcctgttt ggaagctctg ctgaacaata gccgtgtcgt acaggctggt gctgctgagg
       61 gccttcattt ctgccgcggc gtcattcaca taattcacat gtttcaccaa ccaggcggcg
      121 ccgaatgcca tcgggttttg ctgcaccatg ggcccttgct ggccgggtac aataaagtat
      181 ttggtatcga gcatgttcag cacctgcatg ttgggagagc ctgatgaaag ctggtgttca
      241 atcaggtcct ggtagatgct cagcttagcg gcgtggtagc cacctactga acgaacaaat
      301 gcggaggtca gtgcatcatt gaatacatcg ccggtcacat tgaaaacacg gaaatgcgga
      361 tccgggtctt tgcgtatttg ttccagcaca ttgtacaacg gctggttggt ggctgccaca
      421 taactgcggg cttcggtatt ttcagtgtcc tggaaattgt catcgttcag gtaacgacga
      481 cctactgcca gcaaatcgaa tgcattcagc agcagcaatg cagccaatac gatagtgaca
      541 tttaccttgt tgcgggtgaa ggcaaaaagc aggatgaacc cggcggccac aaaagcgagg
      601 ctgcgaacaa agtcgttcat gtacatggcc ctgcggtctt cgccggcagc gttcaccacc
      661 gacttcacca cttcactcat ttgtggcgca ctttgcgcaa tggttttaag cgtttcagct
      721 tcggagcctg aacggaaatc ggaactgaaa tagtagagca acgccagcaa aagcacgacg
      781 ccggtggaaa tgccggcgaa ttttaccgcc ttccattttt cttcaggcga tttgttgccg
      841 aacaccaact cattcaaacc aatgatgccg accatggcaa acaacaattg cggaatgacc
      901 aataccatgg atggtgccct gaatttgttg tacatcggca ggtagtcgaa aaggaagttg
      961 ttgaaggcag aaaaattatg cccccaggcc attaatacag ccagtagtga acaggccagt
     1021 gcccaccagc gatgcggatt gttggtggtg aacataccca gtgcaaacag caggcaaatg
     1081 atggcaccga gatatacggg tccgctggtg aagggttggt cgccccagta agctacgcca
     1141 aagcggctga gttgctgcgc cgtttgctga tctacctggc cgccctggaa ggcacccatc
     1201 agtgtctcgt aaaacttaga atcttcacca agaccttcgc tggcaccgcc atttacattc
     1261 ggcaccagta ggctcagtgt ttcaggtttg ccatagctcc agcggaaggc atattctgca
     1321 tccaaacctg atgaggtggc tttggctgcg cccttgctgg tatcggtgag tggcagcagg
     1381 ttggctttgc cgccacgcat actttctttg ctgtaatcgt aagtggtaaa caagttaacg
     1441 gcgctggtaa gggcaccaac accagcagca cccagggcaa tggagcctgc caacagcatg
     1501 tgttttattt cgccttgctt aatccatttg atgacatacg ctacagtcat gaacagcacc
     1561 actatgagca tgtagtaaat gatctgcagg tggttgttta ccaccagtgc agcggtgaat
     1621 gccgccgtga gtgccccacc cagccagtac tttttgttgt acaacatgat gagtgctccc
     1681 aatagcgcag gcatcagggc catggtgatc attttggtat ggtgccccgt agcaatgatt
     1741 atcgggttgt agctgcaaaa ggcaaagcca atgctgc
//
LOCUS       DATIQF010000178         2107 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_185268,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000178 DATIQF010000000
VERSION     DATIQF010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2107
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185268"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..492)
                     /locus_tag="VLL95_02785"
     CDS             complement(<1..492)
                     /locus_tag="VLL95_02785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37815.1"
                     /translation="MKLLYTRLALLSVLFAFMMAAGCGKKEKKSMKGDEEVTMQDFVD
                     FFDDMKLPFAFTDTLLKKKGNDSLRIDNKIIEKLWGDTLFKDLYRKEKPKVYALGKFR
                     NGEAETYLLIRTKGSQDGVYIMAADEQLVPKASMLLLASKGPAAEPNLVGIDKRYTIT
                     TVDE"
     gene            551..1204
                     /locus_tag="VLL95_02790"
     CDS             551..1204
                     /locus_tag="VLL95_02790"
                     /inference="COORDINATES: protein motif:HMM:NF015956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HSR37816.1"
                     /translation="MYSVAEENYIKSIYHLQRQNQNVTTNELSVRLHTKPASVTDMVK
                     KLQAKKLLTYEKYYGCRLTAAGNRVALTIIRRHRLWEYFLSEKLGFGWEEVHEIAEQL
                     EHVKSDLLTEKLDAFLGYPRFDPHGDPIPDGMGKMEKPAHTLLSAWPVGKKGILSAVV
                     SQNESLLEMLKQKSLAIGTKLKVRQIFSFDKSVEVELADGTVVTLSEQLSNNLFIKS"
     gene            1214..2038
                     /locus_tag="VLL95_02795"
     CDS             1214..2038
                     /locus_tag="VLL95_02795"
                     /inference="COORDINATES: protein motif:HMM:NF014582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HSR37817.1"
                     /translation="MTSLTQYINEIGPVWAALLATCFTWLVTALGASLVFFFKNLHRG
                     VLDAMLGFTGGVMVAASFWSLLNPCIEMSERLFPSVPWMPAAVGFLAGGFFIFFLDKY
                     LPHLHINFGESETEGVHTQWRRSTLLILAITLHNIPEGLAVGVLFGAAALGMPDATVA
                     GAITLALGIGIQNFPEGFAVAMPLRRHGVSRFRSFWYGQLSAIVEPIAGVIGAVAVIY
                     MQPVLPFALAFAAGAMIYVVVEEVIPETQRDKYTDLAVIGFMGGFTVMMILDVALG"
BASE COUNT          502 a          476 c          567 g          562 t
ORIGIN      
        1 ttcatccacc gttgtaatgg tgtaccgctt gtcgatgcct accaggttgg gctctgccgc
       61 aggtcctttg cttgccagca gcaacatgct ggctttgggt acgagttgct catctgccgc
      121 catgatgtac acgccatcct gcgatccttt ggtgcggata agcaggtagg tttcagcttc
      181 gccattcctg aatttgccca aggcatacac tttgggtttt tccttgcggt acaagtcttt
      241 gaagagtgta tccccccata gtttttcgat gatcttgttg tcgatccgaa ggctgtcgtt
      301 tcctttcttt ttgagcaggg tgtcggtgaa tgcgaagggg agtttcatgt cgtcgaaaaa
      361 gtcaacgaag tcctgcatgg tcacttcttc atcgcctttc atgctcttct tctctttttt
      421 gccacagccg gcagccatca tgaatgcgaa caacactgaa agcagggcca gcctggtata
      481 taatagcttc atcgaaaaaa gtttcggtta atcgaaatgg aattttagct ttgtctaaat
      541 taagggaacc atgtattcgg tagccgagga aaattacatt aaaagcatat accacctgca
      601 acggcaaaac cagaatgtga ccaccaacga actttctgta cgcctgcata ccaaacctgc
      661 ttctgttacc gacatggtga aaaagctgca ggccaagaaa ctattgacct acgaaaaata
      721 ttacggctgc cggctcacag ctgccggcaa cagggtggcc ctcactatca tcaggagaca
      781 tcggctctgg gaatatttcc tttcagaaaa gctgggcttt ggctgggaag aagtgcatga
      841 aatagcggaa caactggagc atgttaagag tgacttgctg acagaaaagc tggatgcttt
      901 tttaggctac cctcggtttg atccgcatgg cgatcctata cctgatggca tgggcaagat
      961 ggaaaagccg gcccatacac tgctcagcgc ctggcctgtt gggaaaaaag gcatactgag
     1021 tgcggtggtt agccagaatg aaagtctgct ggaaatgctg aagcagaaaa gtcttgctat
     1081 cggcaccaaa ctgaaggtca ggcaaatatt cagtttcgat aaatcggtag aggtggaatt
     1141 ggccgacggt actgttgtaa cgctgagcga acagttgagt aacaatctgt ttattaaaag
     1201 ctgagattga cctatgactt cattaacgca atacatcaac gaaatcgggc ctgtatgggc
     1261 cgccttgctg gccacttgtt ttacctggct ggttacggca ctaggcgcca gccttgtgtt
     1321 ctttttcaag aatctgcaca ggggtgtact cgatgcgatg ttggggttca ccggtggggt
     1381 aatggtagca gccagtttct ggagcctgct caatccctgc attgaaatga gcgaaagact
     1441 ttttccttcg gttccatgga tgcctgctgc tgttggattt ctggcaggcg gttttttcat
     1501 tttctttttg gacaaatacc tgccacacct gcacatcaat tttggggaaa gtgaaaccga
     1561 aggtgttcac acgcaatggc gacgcagtac gctgctcatc ctggccatta cgctgcacaa
     1621 tattccggaa ggtttggcag tgggggtatt gtttggagcc gcggctctgg gtatgcccga
     1681 tgcaacggtg gcaggtgcca ttacgctggc gctgggtata ggcatccaga attttccgga
     1741 aggatttgca gtggccatgc ctttgcggcg acatggggtc agccggtttc gcagtttctg
     1801 gtatgggcag ttgagcgcta tagtggaacc tatagccggc gtaatagggg ccgtagcggt
     1861 catatacatg cagccggttt tgccctttgc actggccttt gcggcaggag ccatgatcta
     1921 tgtggtggtg gaagaagtaa tacctgaaac acagcgggat aaatacactg acctggcggt
     1981 aattggattt atgggaggct tcaccgtaat gatgatcctg gacgtggcgc ttggctgatg
     2041 aaagccctaa atttgacatg tctgcggaag tagctcaggg gtagagattc agtttcccaa
     2101 actgaag
//
LOCUS       DATIQF010000179         3366 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_78750, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000179 DATIQF010000000
VERSION     DATIQF010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3366
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78750"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..333
                     /locus_tag="VLL95_02800"
     CDS             <1..333
                     /locus_tag="VLL95_02800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37818.1"
                     /translation="EPVARMFKHLNPNIYVTMQGPSEFGVAGRLVNWDRSKDLPNIKV
                     PTLVIGAMHDTMDPEHMKWMATQVQNGRSLVCPNGSHCAMWDDQENYFNGLISFIKDV
                     DAGKPVKQ"
     gene            complement(464..1414)
                     /locus_tag="VLL95_02805"
     CDS             complement(464..1414)
                     /locus_tag="VLL95_02805"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF022137.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSR37819.1"
                     /translation="MDAAKQQMFINRLSKVYKHVGKLARKQGVSCYRVYDHDLPEFPL
                     CIEFYGDKLYVAEYKRRHGMTEEEHDEWMDETLGIVCSLLEVDKENVFLKLRQRKPGR
                     LGQYQKYDEQQHEFVVEENGLQFIVNLSDYLDTGLFLDHRLTRQLVRQQCSGKRVLNL
                     FAYTGSFSVYAAAGGASYVETVDLSKTYLAWAERNLQLNGFNDPLKYKIVHADVLQYL
                     ATLPPASFDLIVMDPPTFSNSKRMEDFLDIQRDHVRLINQCLDALTPGGTLYFSTNLR
                     TFQLQADALNSQQIKDITRATTPFDFEGKLFRWCYRINKE"
     gene            1661..>3366
                     /locus_tag="VLL95_02810"
     CDS             1661..>3366
                     /locus_tag="VLL95_02810"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR37820.1"
                     /translation="MRKMKLWLAGLVLFMAQAKAQPTFPVNGVASPGSGAYAFTNATI
                     VKDSKTTLTNATLVIRDGRIVAVGSGVAVPKDAVVIDCKEKYIYPSFIDIYSEYGMPA
                     RQQGRGGFDFRAPAQLETNVKGAYGWNQALKADAAAGSLFAPDDAKAKGLREAGFGAV
                     LTHQQDGIARGTGAVVTLAGEKANLVMVKDKASAHYSFSKGSSTQSYPGSLMGTISLL
                     RQTYLDAQWYKSNPKAEGVNLTLKAWNDQQNLPQIMDPTQGGDLWNAMRADRIGDEFG
                     VQYIIKASGKEYQRIPEVAGTKAPLIVSLNYPAAQDVEDPNDARYVSLADMKHWEMAP
                     SNPAALEKAGVTFALTMSDVRDGRTFWSNLRKAMEYGLSETTAMDALTKTPATLLGVY
                     DKVGSLDAGKLANFVIANGPIFSEKTTIHHNWVQGIPYRIKDDNWYNVNGSYALTVNG
                     PAGSVKYNLEVKGSNSAEVSATDTLNTQFSFDGRMVKIGFAPRTRRGGGFGGPGGGGR
                     MGGMMGGAAAPLPASAIRLSGVNNGDVWQGTGLDSLGNTLTWSAVRTKEATPKSDSTA
                     KKA"
BASE COUNT          785 a          905 c          941 g          735 t
ORIGIN      
        1 gaaccggttg cccgcatgtt caagcatctc aatccgaata tttatgtcac tatgcagggg
       61 cccagtgaat tcggcgttgc gggtaggctg gtgaactggg accgcagcaa ggacctaccc
      121 aatattaaag tgcctacact ggtgattggc gccatgcacg ataccatgga tcctgagcac
      181 atgaagtgga tggccacgca agtgcaaaac ggtcgcagcc tggtatgccc caacggcagc
      241 cactgcgcca tgtgggacga ccaggaaaat tatttcaacg ggctcatcag ttttataaaa
      301 gatgtagatg ccgggaagcc ggtgaagcaa taaagctttc tgtttaaagc atcatgtttg
      361 aaccacagcg ccacttcacg gcacaaagag tcacaacgtt gtgttcctcg gtgtcgtcgt
      421 gacgctgtgg ttaaatcatc aatcctaaat ccgaaattct caatcattcc ttattgatgc
      481 ggtagcacca ccgaaacagc ttcccttcaa aatcgaaggg cgtggtagcc cgggtaatgt
      541 ctttgatctg ctggctgttc agcgcatcgg cctgcagttg gaaagtgcgc aggttggtac
      601 tgaagtacaa cgtgcctccg ggcgttaatg catcaaggca ttggttgatg agccttacat
      661 gatcccgctg gatatcgaga aaatcttcca tgcgtttgct gttgctgaag gtgggcgggt
      721 ccatcacgat gaggtcgaag ctggccggtg gcagcgtagc caggtattgc agcacatcgg
      781 catgtacgat cttgtatttc agcggatcgt tgaagccatt gagttgcagg ttgcgttcgg
      841 cccatgccag gtaggttttg ctcaggtcca ccgtttccac atagctggcg ccgccggccg
      901 cggcatacac gctgaaggag ccggtgtagg caaacaggtt gagtacccgc ttgccgctgc
      961 attgctgccg caccaactgg cgggtgaggc gatggtcgag aaacaaaccc gtgtcgaggt
     1021 agtcgctcag gttgacaatg aattgcaggc cgttttcctc caccacgaac tcatgctgtt
     1081 gttcatcgta tttctggtac tggcccaggc gcccgggctt gcgctggcgc agtttcagaa
     1141 atacattttc cttgtccact tccagcaggc tgcatacaat gcccagggtt tcatccatcc
     1201 attcatcgtg ttcctcttcg gtcatgccgt ggcggcgttt gtattcggcc acgtacagct
     1261 tgtcgccata aaactcgatg cacagcggaa actcgggcag gtcatgatcg tacacccggt
     1321 agcaactgac gccctgcttg cgggccagct tgcccacatg cttgtacacc ttgctgaggc
     1381 ggttgatgaa catttgttgt ttggcggcgt ccatgacggc aaagatgtgg agcgataggt
     1441 ttaaatgtgc aggagatgat gagttgtttg gcctttgttc aacggttttg aagataaatg
     1501 cactgcggcc agaagtgagt gacacaacga tgtcgggaca tgcacagcag cccgccccaa
     1561 aaaactccta catttcctgc tgtgtatcgg gactattgtc gtcaaatgcg gtagttttct
     1621 ttttccgttt tacctaacac tatcaataaa ctaaagcact atgagaaaaa tgaagctttg
     1681 gttggcgggt cttgtgctgt ttatggcgca ggccaaagcc cagcctacct tccctgtcaa
     1741 tggtgtggca tcgcccggtt cgggggccta tgcgtttacc aacgccacca ttgtaaaaga
     1801 ctccaaaacc acgcttacca atgccacgct ggtcattcgt gatggccgca ttgtagccgt
     1861 gggcagcggg gtggctgttc ccaaagacgc agtggtgatc gactgcaagg agaagtacat
     1921 ctatccttcg ttcatcgaca tctacagcga atatggcatg cctgcccgcc agcaaggccg
     1981 cggtggtttt gacttccgtg ccccggcaca gctcgaaacc aacgtgaagg gcgcctacgg
     2041 ctggaaccag gccctgaagg ccgatgccgc cgccggcagc ctgtttgccc ccgatgatgc
     2101 caaggccaaa ggcctgcggg aagccggctt tggtgccgtg cttacccacc agcaggatgg
     2161 catagcccgt ggtaccggcg ccgtggtaac actggccggc gaaaaagcca acctggtgat
     2221 ggtgaaggac aaggcttctg cacattattc tttcagcaag ggcagcagca cacagagcta
     2281 cccgggcagc ctcatgggta ccatttcatt gctgcgccaa acctacctgg atgcgcagtg
     2341 gtacaagagc aacccgaaag ctgaaggcgt gaacctgacg ctgaaagcct ggaacgacca
     2401 gcagaacctt ccccagatca tggaccccac gcagggcggc gatctctgga atgccatgcg
     2461 tgccgaccgc attggtgatg agtttggcgt gcaatacatc atcaaagcca gtggcaaaga
     2521 ataccagcgc attccggaag tggcaggcac caaggcgccg ctcatcgtga gcctcaacta
     2581 tcctgccgca caggatgtag aagatcccaa cgatgcccgc tatgtgagcc tggccgatat
     2641 gaagcattgg gaaatggcac cgtcgaaccc cgccgctttg gaaaaagcag gtgtgacctt
     2701 tgcccttacc atgagcgatg tacgtgatgg ccgcactttc tggagcaacc tgcgcaaagc
     2761 catggaatat ggcctgagcg aaaccactgc catggatgcc ctgaccaaaa cacccgccac
     2821 cttgctgggt gtgtatgata aagtgggcag cctcgatgcc ggcaagctgg ccaacttcgt
     2881 gatcgccaat ggtcccatct tcagcgagaa gactaccatc caccacaact gggtgcaggg
     2941 tattccttac cgcattaaag acgacaactg gtacaacgta aatggcagtt atgctcttac
     3001 cgtaaacgga ccagccggaa gcgtgaaata caacctggaa gtaaaaggca gcaacagcgc
     3061 cgaagtaagt gcaacggata cattgaacac ccagttcagc tttgacggcc gcatggtgaa
     3121 aattggtttt gcgcccagaa cccgccgcgg tggcggcttt ggcggccccg gtggcggtgg
     3181 tcgcatgggt ggcatgatgg gtggcgccgc tgctccattg cccgccagtg ccattcgcct
     3241 gagtggtgtg aacaatggcg atgtatggca gggtaccggc ctcgacagcc tgggcaatac
     3301 gctgacatgg tctgcagtgc gtaccaaaga agcgacgcca aaatcggata gtaccgctaa
     3361 aaaggc
//
LOCUS       DATIQF010000180         5266 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_33125, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000180 DATIQF010000000
VERSION     DATIQF010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5266
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33125"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..461)
                     /locus_tag="VLL95_02815"
     CDS             complement(<1..461)
                     /locus_tag="VLL95_02815"
                     /inference="COORDINATES: protein motif:HMM:NF019500.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel"
                     /protein_id="HSR37821.1"
                     /translation="MRSLVWGEESGLLIFTGSLHYMATVKKTNPFARSNNDTGFGNTV
                     GNTGGRFVNKDGSFNIYREGGNPFSWFSMYHTLLNMPSWRFLLTVLILFLGINLLYTG
                     LYILMGADQFTGFVSVSPWDQVKELFYFSMQTFTTVGFGRINPVGDLASFTA"
     gene            535..1308
                     /locus_tag="VLL95_02820"
     CDS             535..1308
                     /locus_tag="VLL95_02820"
                     /inference="COORDINATES: protein motif:HMM:NF014460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR37822.1"
                     /translation="MLWSKTWNAFLDELGGISRFASRFASQVFKPRYEFAEFLKQCYF
                     IGNLSFPLVGLTSFIMGLVLTMQLRPTMVDYGVEAQIPAMVAVAVIRELGPVIIALIF
                     AGKIGSSIGAELGSMRVTEQIDAMEVSGTNPFKYLVVTRVLATTLMLPVLVIIGDTIM
                     LLGSFIGVNLYTPNSFTMFIRQAMDSLTLQEFIPAFIKTFFFGFAIGIIGCYKGFTTS
                     RGTEGVGRSANSAVVVSSVWIFILDLIAVQITDFLGYNG"
     gene            1301..2077
                     /locus_tag="VLL95_02825"
     CDS             1301..2077
                     /locus_tag="VLL95_02825"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSR37823.1"
                     /translation="MDDSLTIANNTKQITNNQVVLEATHLYKSFGDNHVLVDFNFHLQ
                     KGENVVILGKSGSGKSVFIKCVIGLMEPDAGNITVLEQDISNLSMQQLDQLRAKVGFL
                     FQSNALYDSMTVRENLEFPLRRHWLRSESESTKDMVIEVLENVGLAHTVDMMPSELSG
                     GMRKRIALARTLILNPDIILYDEHTTGLDPITAREISELMLEMGAKYSTSSVVISHDM
                     NCIRMVADRVVLLYDGKAFATGTFEELKNSRDSVVRQFFD"
     gene            2092..3087
                     /locus_tag="VLL95_02830"
     CDS             2092..3087
                     /locus_tag="VLL95_02830"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HSR37824.1"
                     /translation="MKRGWNNVKLGLFVFVGLILLITGLYLIGKDTNLFSKNYTLKAR
                     FSNVEGLIAGNNVRFAGIQIGTIKRVKFLSDSVIEVTMTIDDEMLTLIKKNDIASIGT
                     DGLMGNKIVNITPSKTPGPLAQENNILPVREGASTEAMLNTLAGTNENLSFITEQLKK
                     TIQDINTSENLKILLHDKRLPQSIVASLNNIQLTTEKAHRTVADLHLIIADVKSGKGS
                     VGELLRDSTFSDELNKAVTGLHAIEARVDTLAQQLSGLVLTIQRDLATGKGPVPAALH
                     DSLMVAKVHSILSHVDTSTVMLNENLEAMRHNFLFRGYFKKQEKEKQKQAATQKQ"
     gene            3189..5093
                     /locus_tag="VLL95_02835"
     CDS             3189..5093
                     /locus_tag="VLL95_02835"
                     /inference="COORDINATES: protein motif:HMM:NF012931.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 20 glycosylhydrolase"
                     /protein_id="HSR37825.1"
                     /translation="MRKAHRFIWAVVFLSLATALVKAQGVSIIPQPNYLKEEKGSFSL
                     PSNPVILVPARNEAIQNIAAMFAAQLKTTLGRQCTISTTTSKFDVNFSLLEQPLPKLG
                     KEGYTLQINDKGINLRANSDAGIFYGMQTLLQLLPAEIEGKTTANIRQLQLPFLTIVD
                     YPRFGWRGLMLDVARHWFTKQQVKDFIDHMVKYKYNMLHLHLSDDQGWRIEIKSLPKL
                     TEVGAWRAPRQGRWGEWSKPTPDEPKTYGGFYTQDDIREIIAYAKDRYVTVMPEIDVP
                     GHSMAMVAAYPELSCTPGTYSVNAGDRFMIWEGNGKFYGTIDNTLCPANERVYEVLDK
                     VFTEVAQLFPFEYIHMGGDECYKGFWEKSEAVKSLMQKEGLKDMEEVQSYFVKRVGKI
                     IASKGKKMMGWDEIMEGGLADGAAVMSWRGEKGGIEAAHLKHPVVMSPNSYAYVDLYQ
                     GDPVAEPPTYSMLRLNQSYNFDPLPAGVDPQYVLGGQANLWSERLSTVRHAEYMLWPR
                     GWAVAESVWSNPDVKNWDDFVRRTESHFQRWDMAQVNYSRSMYDPIFTIKKSDNNEPV
                     IELSTQLKDLKIHYSFDETNPDQFYPVYDKPLTIPKDAVNLKVVTSRNGKQVGKIINM
                     PVVEIKRRLK"
BASE COUNT         1512 a         1222 c         1289 g         1243 t
ORIGIN      
        1 gcagtaaagg aggcgaggtc gccaacagga ttgattctgc caaaacccac cgtagtaaag
       61 gtttgcatgc tgaaatagaa aagttccttt acctggtccc acgggctaac cgaaacaaac
      121 cccgtgaact ggtcagcgcc cataaggata tataaacccg tataaaggag gttgataccc
      181 aaaaaaagaa tcagcaccgt gagcaaaaag cgccagctgg gcatattcaa cagggtatgg
      241 tacatgctga accatgaaaa cgggttgcct ccctctctgt aaatattgaa gctgccatcc
      301 ttgtttacga atcgaccgcc ggtattacca acggtattac caaatccggt gtcattatta
      361 gaccgtgcaa aggggttggt cttttttact gtggccatat agtgcaatga tccggtgaaa
      421 ataagtaatc ctgattcctc cccccaaacc agggaacgca tgacgaatag catatttcag
      481 ggcctgcctg cggggtaact tagcattgga tgattctgaa ttcaaagaat tgacatgctc
      541 tggagcaaga cttggaacgc atttctggac gagttgggag gcatctcccg ctttgcctcc
      601 aggtttgcca gccaggtttt caaacccagg tacgaatttg cagaattcct gaaacagtgc
      661 tatttcatcg gcaacctgtc tttcccgctg gttggtctca cctcttttat catggggctg
      721 gtgcttacca tgcaacttcg ccccacaatg gtggactatg gcgtagaagc ccagataccc
      781 gccatggtag cggtggccgt cattcgggaa ttgggcccgg tcatcatcgc actcattttc
      841 gctggcaaaa taggcagcag catcggcgca gaactgggaa gcatgcgggt aacggaacaa
      901 attgatgcca tggaggtttc cggcaccaat cctttcaagt acctggtggt cacccgtgtg
      961 ctggctacca ccctcatgct gccagtattg gtcatcattg gcgataccat catgttgttg
     1021 ggttcattca ttggggttaa cctctatacg cccaatagtt tcaccatgtt catcaggcag
     1081 gcaatggatt ctctcacatt gcaggaattc attccggcat tcattaaaac cttctttttt
     1141 ggatttgcca tcggcatcat cggctgttac aaaggtttca ccaccagccg aggcaccgaa
     1201 ggcgtgggca ggtctgccaa ctcagccgtg gtagtgagtt ctgtttggat tttcatttta
     1261 gacctgattg ctgttcagat cactgatttt ttgggataca atggatgatt ccttaaccat
     1321 agcaaacaat acaaaacaga tcaccaacaa ccaggtggtg ctggaagcca cgcacctcta
     1381 caaatccttt ggcgacaacc atgtgcttgt tgatttcaac ttccatttgc aaaaaggtga
     1441 aaatgttgtc atcctgggca aatcgggttc aggaaaatct gttttcatca aatgcgtcat
     1501 tggcttgatg gaacccgatg cgggaaacat caccgtgctg gaacaggata tctccaatct
     1561 ttcgatgcag cagttggacc aactgcgggc caaagtgggc ttcttatttc aaagcaatgc
     1621 gctttatgat tccatgacag taagagaaaa cctggaattt ccgctgcgcc gccactggct
     1681 gcgtagtgaa tccgaatcga ccaaagacat ggtgatagag gtgctggaaa atgtaggact
     1741 tgcccacaca gtagacatga tgccatccga actatcaggt ggcatgcgca aaagaatagc
     1801 cctggccagg acactcatac tgaaccctga catcatcctg tatgatgagc acaccacagg
     1861 gctcgatccc atcacagcga gagaaataag tgagctgatg ctggaaatgg gcgccaaata
     1921 cagcacttca tccgtggtca tttcacacga catgaattgc atcaggatgg tggccgacag
     1981 ggtggtgctg ctttacgatg gtaaagcgtt tgcaacagga acatttgaag aactgaaaaa
     2041 cagtcgcgac agtgttgtgc gacaattttt tgactaaaat ggaagcattg tatgaaacgc
     2101 ggatggaaca atgttaagct cggcttattc gtattcgttg gcctgatcct cctgatcacc
     2161 gggctttatt tgattggaaa ggatacgaac cttttttcga agaactatac actgaaagca
     2221 cggttcagca atgtagaagg attgattgcc gggaacaatg taaggtttgc cggcatacag
     2281 atcggaacga tcaaaagagt gaaattcctc agcgattctg tgatcgaggt gacaatgacc
     2341 atcgacgatg aaatgcttac acttatcaag aaaaacgaca ttgcaagcat aggaaccgat
     2401 ggacttatgg gcaacaaaat cgtgaacatt accccgtcaa aaacacccgg tccattggca
     2461 caggaaaata atatcctgcc tgtacgtgaa ggcgccagta cagaagccat gctaaatacc
     2521 ctggcaggca ccaatgaaaa tctttccttc attaccgaac aactaaagaa aaccatccag
     2581 gatataaaca ccagtgagaa tttaaaaatc cttttgcacg acaaaaggct gccccaaagt
     2641 atagtagcgt ccctgaacaa tattcagttg acaacggaaa aagcccaccg caccgttgcc
     2701 gatttacacc tcatcatcgc cgatgtaaaa tcgggtaaag gcagtgtggg cgaattgctt
     2761 cgcgactcca ctttttccga tgaactgaac aaggcagtta ctggcttgca tgccattgaa
     2821 gccagggtgg atacactggc gcagcaactc tccggtttgg tactgaccat ccaaagagac
     2881 ctggctaccg gcaaaggacc ggttcccgct gcgttgcacg actcgctgat ggtagccaaa
     2941 gtgcacagca tcctgtctca tgtggatacc agcaccgtta tgctgaacga gaacctcgaa
     3001 gccatgcggc acaactttct tttcagggga tatttcaaaa aacaggagaa agaaaagcag
     3061 aaacaggctg ctactcaaaa acaatagtcg cgtcctatac aggacgccaa tttcatttgc
     3121 cgccaatcaa aatttcaatg gcgtttctgg ctacattcac gtggtaaaat tgaaagcaaa
     3181 gtatgaatat gagaaaagca catcgattca tatgggcagt ggtatttctt tcactcgcaa
     3241 cggccctggt aaaggcgcaa ggcgtgtcca ttattccaca gccgaattat ctgaaggaag
     3301 agaaaggtag tttctcattg ccttccaacc cggtaatact ggtaccagcc cgcaatgaag
     3361 ccattcagaa tatagctgcc atgtttgccg cacagctaaa aacaactttg ggcaggcaat
     3421 gtaccatcag tactaccacc agtaaattcg atgtcaattt tagcttgctt gaacagcccc
     3481 ttcccaaatt aggaaaagaa ggatacacac tgcagataaa cgataagggc atcaacctta
     3541 gggccaatag tgatgccggt attttctatg gcatgcaaac cctgctgcaa ttattgcctg
     3601 ctgaaataga gggcaaaacg actgcgaata tcaggcagtt gcaactgcct ttcctcacca
     3661 ttgtagacta cccgcgtttt ggatggcgag gcctgatgct ggacgttgct cgtcattggt
     3721 ttaccaagca gcaggtgaaa gattttattg atcacatggt gaagtacaag tacaatatgc
     3781 tgcacctgca tttgagcgat gaccagggtt ggcgcatcga aataaagagc ctgcccaaac
     3841 tcacagaggt aggtgcatgg cgggcacccc gacagggccg gtggggcgag tggagcaaac
     3901 caacgcctga tgagcccaaa acgtatggag gtttttacac ccaggatgac attagggaga
     3961 tcattgctta cgccaaggat agatatgtga cagtgatgcc tgagatagat gtgcctgggc
     4021 acagcatggc catggtggcc gcttaccccg aattgagttg cacaccgggc acttattcgg
     4081 taaatgccgg tgaccgcttc atgatatggg aaggcaacgg aaagttttac ggcactattg
     4141 acaacaccct gtgcccggcc aatgaaagag tatacgaggt actcgataaa gtgtttacag
     4201 aagtagccca gttgtttccg tttgaataca tacacatggg tggagatgag tgctacaagg
     4261 gcttttggga aaaaagtgaa gcagtgaagt cattgatgca aaaggaaggc ctgaaggaca
     4321 tggaagaagt gcaaagttat tttgtgaaac gagtagggaa gatcattgct tcaaaaggaa
     4381 aaaagatgat gggttgggat gagatcatgg aaggtggcct ggccgatggc gcggcagtca
     4441 tgagttggcg tggagaaaag ggcggcattg aagcagccca tctcaaacac ccggtggtga
     4501 tgagcccgaa cagctacgct tatgtcgatt tgtaccaggg agatccggtg gccgaaccac
     4561 ccacctactc tatgcttcgc ctgaatcaat cctacaattt tgacccgcta cctgccggcg
     4621 tcgatcccca atatgtttta ggtggccagg ccaacctgtg gagcgaaagg ctgagtacgg
     4681 tgcgacatgc cgagtacatg ctctggcctc gtggatgggc agtggccgaa agtgtatgga
     4741 gcaaccctga tgtcaagaat tgggatgatt ttgtcaggag aacagaaagt cattttcagc
     4801 gctgggatat ggcgcaggtc aattattcac gcagcatgta cgacccgatt ttcaccatta
     4861 aaaaatcgga caacaacgaa ccagtgatag aactgtccac gcaattgaaa gacctgaaaa
     4921 tccattacag ctttgatgaa accaatcctg atcagtttta cccggtatac gacaaaccac
     4981 ttaccatacc aaaggacgcc gtgaacctga aggtggtaac cagccgaaat ggcaaacagg
     5041 ttggaaagat catcaatatg cctgtggtgg aaatcaagcg gcgattgaaa taaatagaca
     5101 tcctatgcat acccgaagaa ttattggaac tgtgatagtg ttatttgcct ttgcctcatg
     5161 cagcaagggc tcagacaaca ccaacaatga acccaggaag gtattctaca gttggaatca
     5221 atttgtgatg ggcgccgacc tttcttatgc caacattgtt gaaagc
//
LOCUS       DATIQF010000181         2139 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_33133, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000181 DATIQF010000000
VERSION     DATIQF010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2139
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33133"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            271..648
                     /gene="gcvH"
                     /locus_tag="VLL95_02840"
     CDS             271..648
                     /gene="gcvH"
                     /locus_tag="VLL95_02840"
                     /inference="COORDINATES: protein motif:HMM:NF002270.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HSR37826.1"
                     /translation="MNFPSELRYTKDHEWIKLDGNVATVGITDFAQRELGDIVYVDID
                     TVGKSLEAEAVFGTVEAVKTVSDLFLPVSGKILEVNPNLNNQPELVNSDPYGEGWMMK
                     LEVSNTADVDALMTAEAYQQLVG"
     gene            696..1238
                     /locus_tag="VLL95_02845"
     CDS             696..1238
                     /locus_tag="VLL95_02845"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSR37827.1"
                     /translation="MKAAAPYTEADLLQLLRQRSESGFDYLYTHYSGALLQIIGAIVQ
                     DASSAEDVLQEVFVRIYQKLHLYDEQKSRLYTWMAQIARNAAIDRHRQQQNRPGLHNQ
                     KPLESVHDTVEGANPDTADVRFWVNKLDKPEKEVVVLAYLQGFTQEEIGQLLNTPLGT
                     VKSRIRSGLKKLRQMMTERS"
     gene            1235..2023
                     /locus_tag="VLL95_02850"
     CDS             1235..2023
                     /locus_tag="VLL95_02850"
                     /inference="COORDINATES: protein motif:HMM:NF021604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HSR37828.1"
                     /translation="MNPSEYIASGAIEAYVMGLADAGDQQLHEQMEAAYPEVKAAREA
                     IELELESTARQVPLAGNGLQQQIKQQLQSEKLLTETAAAKTVSLPPAPKPLRWFRTAL
                     AASVLLLMGSILLNFVYWSRYTDYRKRYTALASEQRALVARTKAMEASMKMLASPHVK
                     PVVMQGTPEHTGMLATVYWEQNSKDVYLVVNNLPAPPQGKQYQLWAQVGDEMVDAGLL
                     TWNLDAGVLKMKNIPSASAFAISLEAEGGSKTPTLSSVMVLGKV"
BASE COUNT          560 a          544 c          569 g          466 t
ORIGIN      
        1 ggtttttggc gaactggaaa ttggcttcga tgtgctggac agcattgccg ccaccaaaac
       61 cctgcccggc gaccggccgg aagcagatgt gcggatgcgg atgtttttgc tgaacaaacc
      121 caaattgaag taaggggaaa ccaacccggc acgaagcatg ggaaaggggc aacccttccg
      181 ttgcgcaatc aaaaatgcat tggccgtgca ggccattttt cctttaggtt tgcattcctt
      241 tttatttgca aaccatataa aaacgatacc atgaattttc cgagcgaact gcggtatacc
      301 aaagaccacg aatggatcaa actggatggc aatgtagcca cagtaggcat taccgatttt
      361 gcccagcgtg aattgggcga cattgtgtac gtggacattg ataccgttgg caaaagcctg
      421 gaagctgagg ccgtatttgg cacagtggag gccgtaaaaa ccgtgagtga tttgttcctg
      481 ccggtgagcg gaaagatcct ggaagtgaat cccaacctca acaaccaacc cgaactggtg
      541 aattccgatc cgtatggcga aggctggatg atgaaactgg aagtaagcaa caccgcggat
      601 gtggacgccc tgatgactgc tgaagcttac cagcaattgg tcggttaatg cttaccctgt
      661 ttttcccttt gctatttcac tcccaaccgt agtgtttgaa agctgctgct ccatacacag
      721 aagccgacct gctgcaattg cttcgccagc gcagtgagtc cggttttgat tatttgtaca
      781 cgcattacag cggtgccctg ctgcaaatca ttggtgctat agtgcaggac gcctcttctg
      841 ccgaagatgt gctgcaggaa gtatttgtac gcatttacca aaagctgcac ctgtacgacg
      901 aacagaaaag ccggctgtac acgtggatgg cacagatagc ccgcaatgcg gccattgacc
      961 ggcaccggca gcaacaaaac aggccggggc tgcacaacca aaaaccgttg gaatccgtac
     1021 atgatacggt ggaaggcgcc aaccccgata cagccgatgt tcgtttttgg gtgaacaagc
     1081 tggacaaacc agagaaagaa gtagtagtat tggcttacct gcaagggttt acgcaggaag
     1141 aaatcggcca gttgctcaat acgccacttg gaacggtgaa aagccgcatc cgcagcgggt
     1201 tgaaaaaatt gcggcaaatg atgacagaac gatcatgaac ccgagtgaat acatagccag
     1261 tggggccatt gaggcctacg taatgggcct ggccgatgcc ggggaccagc agctgcatga
     1321 gcagatggaa gctgcctacc ccgaagtgaa ggccgcccgg gaagccatag aattggaatt
     1381 ggaatcaaca gcaagacagg taccgcttgc cggcaacggc ctgcagcagc aaataaaaca
     1441 acagctgcag tcggaaaaac tactgacaga aaccgccgct gccaaaaccg tttcgctgcc
     1501 gccggccccc aaacctttgc gttggtttcg tactgccttg gctgcttcgg ttttgctgct
     1561 gatgggcagc atcctgctca actttgttta ctggagcagg tataccgact atcgtaaaag
     1621 atatacagca ctggcatcgg agcagcgggc gctggtggcc cgcaccaaag ccatggaagc
     1681 cagtatgaag atgctggcaa gcccccatgt aaaaccagtg gtaatgcaag gcacccccga
     1741 acatacgggc atgctggcca cggtgtattg ggagcagaat tcaaaagatg tttacctggt
     1801 ggtaaacaac ctgcccgcac cgccgcaggg caaacaatac cagctttggg cacaggtagg
     1861 cgatgaaatg gtggacgccg gcctgctgac atggaacctt gacgcgggtg ttcttaaaat
     1921 gaaaaatatt cccagtgctt ccgcatttgc catcagcctt gaagcagaag gtggcagcaa
     1981 aacacctaca ctttcttcag taatggtgtt gggcaaagtc tgaaaatgat gtcatcgcaa
     2041 ttgcccccca ctcctttgcc atcctggcgt ttgtatttgc ccgccttcag ttggctggct
     2101 ttcaccatgt tcttgtttac cctgccgggt tccgcattt
//
LOCUS       DATIQF010000182         2499 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_2756, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000182 DATIQF010000000
VERSION     DATIQF010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2499
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2756"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1471)
                     /locus_tag="VLL95_02855"
     CDS             complement(<1..1471)
                     /locus_tag="VLL95_02855"
                     /inference="COORDINATES: protein motif:HMM:NF003007.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HSR37829.1"
                     /translation="MFKFIEELLLPATDPTPAQSIILVAAAITGGMLLGRIKVARASL
                     GAAGVLFIGIILGHLGYRLHEQTMHFIRDFGLILFVYAVGLQVGPAFFSSFKKEGLVM
                     NSIAISAVALSFIVAWIIMRSSGTAPEYMAGIMTGSVTNTPSLGAAKSVLKEVAATKP
                     GVSFNDPANGYAIAYPFGAVGEILLIILFQRLFRINIKKEHADFEEKRRLEYPHPATM
                     KCRVINPEVFGKTLVEALGSEMLEKVIVTRLKCSGTVRVITPSAGTVLKERDVLMMVG
                     LPHDLEAATAKLGRPSTDTFITSDEEVETRDITVTRSRIAHQTIAQLNFDAQYGVKIT
                     RIFRSGMELITTPSFVVHIGDTLRMVGPKSQLKEAESILGNSRKRLAEPELASIFVGI
                     ILGMLLGSIPLVIPGMPVPIKLGMAAGPLIVAILISRYGGLSRLHSYMNQSAAWFMRD
                     FGIALFFAAVGIQAGKTLYQNFMENNGWWWLLYGIAITSI"
     gene            complement(1630..2265)
                     /locus_tag="VLL95_02860"
     CDS             complement(1630..2265)
                     /locus_tag="VLL95_02860"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF009668.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA];
                     GO_process: GO:0098869 - cellular oxidant detoxification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HSR37830.1"
                     /translation="MSLRLGDIAPNFQADTTIGHIDFHEYLGNGWGILFSHPADYTPV
                     CTTELGRTAQLAEEFAKRNTKVLAVSVDDVASHKSWIGDINETQHVNVQFPIIGDEER
                     KVATLYDMIHPNASETATVRSLFIIGPDKKIKLIITYPASTGRNFVEVLRVLDSLQLS
                     AQYSVATPADWKEGEDVIVSLAVSTEDAVKKFEKGVKVVKPYLRYTPQPNK"
BASE COUNT          606 a          614 c          653 g          626 t
ORIGIN      
        1 ggatcgatgt aatggcaatg ccatacagaa gccaccacca tccgttgttt tccatgaaat
       61 tctggtacag tgttttgccg gcctgtatgc caacggcggc aaaaaacagg gcgatgccaa
      121 agtcacgcat gaaccaggca gcgctttggt tcatatacga gtgaagcctg ctcaaaccac
      181 cataacggct gatgagaatg gctacaatta acggaccggc agccatgccc aatttaattg
      241 gcacaggcat gccgggaata accagcggga tagaacccaa taacatgccc aggatgatgc
      301 ccacaaaaat ggaggccagt tcgggttcgg ccagtcgctt gcggctgttg cctaaaatgg
      361 attcggcttc cttcagttgg ctcttggggc ctaccatgcg gagtgtatcg ccaatgtgca
      421 ctacaaaaga tggtgtggta atcaactcca tgcccgatcg aaaaatgcgg gtgatcttga
      481 cgccgtattg cgcatcgaag ttgagctgcg ctatggtttg gtgggcgatg cggctgcggg
      541 tgacggtgat gtcacgtgtt tccacttctt catcgctggt aataaaggtg tccgtgctgg
      601 ggcggcccag tttggcagtg gccgcttcca ggtcgtgcgg caaacccacc atcatcagca
      661 catctctttc tttgagcacc gtacccgccg aaggtgtgat gacacgaacg gtgccgctgc
      721 atttcaaacg ggtgacgatt actttttcca acatttcgct gcccagcgct tccaccagtg
      781 ttttgccaaa cacttcgggg ttgatcaccc ggcacttcat ggtggccgga tgcggatatt
      841 ccaggcgacg cttttcttca aaatcggcgt gttccttttt tatgttgatg cggaaaaggc
      901 gctgaaacaa aatgatcagc aggatttctc ccaccgcacc aaatgggtaa gcaatggcat
      961 agccgttggc cgggtcgttg aagctgacgc cgggtttggt ggccgccact tctttcagca
     1021 cacttttggc agcgccgagg ctcggggtgt tggttaccga tcccgtcatg atccctgcca
     1081 tgtattcagg agccgtgccc gaactgcgca tgatgatcca tgccacaata aaactgaggg
     1141 ccaccgccga gatggcgatg ctgttcatca ccaagccctc ttttttgaaa gaagagaaaa
     1201 aggccgggcc tacctgcaag cctactgcgt aaacaaagag tatgagacca aagtcgcgga
     1261 tgaaatgcat ggtttgctca tgcaacctgt aacctaaatg accgagtatg attccaatga
     1321 acaaaacgcc ggctgctccc agtgaagctc ttgccacttt aatacgaccc aataacatgc
     1381 cgccggtaat ggcagcagcc accagtatga tggattgtgc aggtgtggga tcggtagcgg
     1441 gaagaagcaa ctcctcaatg aacttgaaca ttgctgtaac tgtttttgct gccgcaaatc
     1501 tatggtcggg ttttgcgggt caggatgata ttgctcatta aaaatattgc cgcagcaggc
     1561 ataaaaaaag aaaggcctct ttttcaaaag gccttatttg tacaatggca gctgatattt
     1621 tcagtcagct tacttgttgg gttgtggcgt ataacgcagg taaggcttca ccacttttac
     1681 gcctttttca aatttcttca cggcgtcttc ggtgcttact gccaggctca caattacgtc
     1741 ttcgccttct ttccagtcgg ccggtgtggc tacactgtat tgagcagaaa gctgcaggct
     1801 gtccagcaca cgcagcacct ctacaaagtt gcgcccggta ctggcgggat aggtaatgat
     1861 gagcttgatc tttttgtcgg ggccgatgat gaacaggctg cgcacagtag cagtttcact
     1921 ggcattggga tggatcatgt cgtaaagcgt agccactttg cgttcttcat cgccaataat
     1981 gggaaactgc acattcacat gctgtgtttc gttgatgtcg ccaatccagc ttttgtggct
     2041 ggctacatca tccacgctca ccgccagcac tttcgtattg cgtttggcaa attcttctgc
     2101 cagctgtgca gtgcggccca gctcggtggt gcaaacgggc gtgtaatcgg cggggtggct
     2161 gaaaaggatg ccccaaccat tgcccaggta ttcatgaaaa tcaatgtgac caatggtagt
     2221 gtcggcctgg aaattgggtg cgatatcgcc taatcttaaa ctcatattgg gtgttttttg
     2281 gttatgaaag gactgtaaag ataatagctc ataagaaaag tgaacaatta caaacggaat
     2341 taactttgct tcgtagcact ccatttttat gctgtcacaa aaaacaaaat atgcgctgca
     2401 ggcgctggga tacctggcag gccgatacgg cgaaggcccg gttttgatac cgcttattgc
     2461 agaagaaaaa gggatcccgc tgcgcttcct ggaaaacat
//
LOCUS       DATIQF010000183         2455 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_93926, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000183 DATIQF010000000
VERSION     DATIQF010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2455
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93926"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..821
                     /gene="gpmI"
                     /locus_tag="VLL95_02865"
     CDS             <1..821
                     /gene="gpmI"
                     /locus_tag="VLL95_02865"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR01307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046537 -
                     2,3-bisphosphoglycerate-independent phosphoglycerate
                     mutase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HSR37831.1"
                     /translation="VGADDQPIATIKDGDAVLVFNFRTDRCREITEVLTQKNHPDHDM
                     HTLQLHYTTMTEYDKSWTGVNVVFETDNLNNTLGEIIAANGLKQIRIAETEKYPHVTF
                     FFSGGREKEFEGEKRIIVQSPKVATYDLQPEMSANEVTATLLPEIASEEYAFICLNYA
                     NADMVGHTGVWEAAIKAAETVDNCVRQVVTTALEHGYTIFLTADHGNSDYLVNADGSP
                     NTAHTLNPVPLFVISKQWKGSVKPGKLGDIAPSILTVMGLPIPNEMTGEVLVSG"
     gene            990..1511
                     /locus_tag="VLL95_02870"
     CDS             990..1511
                     /locus_tag="VLL95_02870"
                     /inference="COORDINATES: protein motif:HMM:NF025734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-binding domain-containing protein"
                     /protein_id="HSR37832.1"
                     /translation="METENKPAVRKPNWIKRIAIGLLLVLIGIQFIQPDKDNQSMDMT
                     NDISKVVTVPDSVHALLKASCYDCHSNFTNYPWYSNIQPVGWWLKDHIDEGKQSLNFS
                     EFAALEPRPGGRYSTTQALQDHKLEEVAEMVEEGEMPLQSYTIIHRDSKLTDTQKKVI
                     TDWVASARQQLKQ"
     gene            1535..2050
                     /locus_tag="VLL95_02875"
     CDS             1535..2050
                     /locus_tag="VLL95_02875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37833.1"
                     /translation="MKITSKYLAVLAVGLALSVPLLYLADFAFERAHHRVEMWEKLRH
                     SQLDTIRMETSGLRWMKPGKELLVKGSYFDVYDIRYEKGWAIVTGFFDDRETDMHVAF
                     AQGQAHENARGKTPSLIAHWLQKQWHQSNWQVRLFAWRSIMEKPVCYVDEQLPFRVLA
                     TPDRPPRRMVS"
     gene            2198..>2455
                     /locus_tag="VLL95_02880"
     CDS             2198..>2455
                     /locus_tag="VLL95_02880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37834.1"
                     /translation="MKTIIQAIIAWGIPLVVTAQADTIKGYDEVTIAGNKWEQKLSEV
                     PNQITKISKKDILFNNPQTSADLLAQSGTVFVQKSQMGGGSP"
BASE COUNT          694 a          591 c          596 g          574 t
ORIGIN      
        1 ttgtaggtgc tgatgatcag cccattgcta ccattaaaga tggcgatgct gttctggtgt
       61 ttaatttccg caccgaccgg tgccgggaaa taacagaggt actcacgcag aaaaatcacc
      121 cggatcacga catgcatacc ctgcagttgc actacaccac tatgaccgag tacgataaga
      181 gttggacggg tgtaaatgtt gtgtttgaga cagacaacct gaacaacaca ctgggcgaaa
      241 tcattgcggc taatggtttg aagcaaattc gaattgccga aactgaaaaa tacccgcatg
      301 taactttttt ctttagtggt ggccgcgaaa aagaatttga gggagaaaaa cgcatcattg
      361 tgcaaagccc caaagtagcc acctacgatc tccagcctga gatgagtgcc aatgaggtta
      421 cagcgacatt gttacccgaa atcgcttcag aagaatatgc attcatttgt ttgaattatg
      481 ccaatgccga tatggtgggg cacaccgggg tttgggaagc agccattaaa gcggcagaaa
      541 ctgttgacaa ctgtgttcgc caggtagtga ccactgccct tgagcatggc tataccattt
      601 tcctgaccgc cgaccatggt aacagcgatt acctcgtcaa tgcagacggt agccccaaca
      661 cggcacatac acttaacccc gtaccactgt ttgtcatcag caaacaatgg aaaggcagcg
      721 tgaagcccgg caagttggga gatatcgccc ccagcatact tacggtgatg ggcttgccca
      781 ttcccaatga aatgacggga gaagtactgg tgagcggata gtctgcgcaa ccccccagag
      841 atatcaaagc atctgccaac gcggatgctt ttttttgccc tccttcggca ggtttctcag
      901 cgtagagccg atgctgtgat cctgctttgc tttggcaata acattacctt tattccctgg
      961 ctatccataa ccattctcaa caacgctcca tggaaactga aaataaacca gctgttcgca
     1021 aacccaattg gataaagcgc atcgctatag gtctgctgct tgttttgata ggcattcaat
     1081 tcatccagcc cgacaaagac aaccagagca tggatatgac caacgatatt tcaaaagtgg
     1141 tgacagtacc cgacagcgta catgccttat tgaaagcctc ttgttacgat tgccacagca
     1201 acttcaccaa ttacccttgg tacagtaata ttcagcccgt aggctggtgg ctgaaagacc
     1261 acatagacga aggaaagcag agccttaact tttctgaatt tgccgcccta gagccacggc
     1321 cggggggacg ctacagtact acacaggcct tgcaggatca taaactggaa gaagtggcag
     1381 aaatggtgga ggaaggtgaa atgccgctcc aatcctatac catcatacac cgggactcca
     1441 agctgactga tacgcagaaa aaagtgatca cagattgggt agcatcggca cggcagcaac
     1501 tcaagcaata gttttccggc ggtaagagca gttcatgaaa attacaagca aatacctggc
     1561 agtgttggca gtcggcctcg ccctgtcagt acccttgctg tacctggcag attttgcttt
     1621 tgagagagct catcatcgtg tagagatgtg ggaaaaactg cgacacagcc aattggacac
     1681 cattcgtatg gagacatccg ggttgcgatg gatgaagccg ggaaaagaac tgttggttaa
     1741 gggatcatac tttgatgttt acgatatccg ctatgaaaaa gggtgggcca ttgtaaccgg
     1801 cttttttgat gacagggaga ctgatatgca cgtggctttt gcccaagggc aagcccatga
     1861 aaatgcccgg ggcaaaacgc catcactcat cgcccactgg ctgcagaagc aatggcatca
     1921 atcgaattgg caggtcagat tgttcgcatg gcgttccatt atggaaaagc cggtttgtta
     1981 tgttgatgaa caactcccgt tcagggtgct ggccacgcct gatcgtcctc cccgaaggat
     2041 ggtctcttga tttctccagg ttttactgat cggcacagaa aaggctcttt acagagggtc
     2101 ctgttttggt gctattaacc attggcagca gtatgtcagg tcgattttat ttttcaactg
     2161 ctgcatacca ttagaaccaa aaagtttcaa tcactgaatg aaaacaatca tacaggcaat
     2221 catcgcatgg ggtatacccc ttgtggttac agcccaagcc gataccataa aggggtacga
     2281 cgaggtgacc attgccggga acaaatggga acaaaaactg tcagaggttc ccaaccagat
     2341 caccaagatt tcgaaaaaag atatcctctt caataacccg caaacatccg ccgacctgct
     2401 ggcacaaagt ggaactgtgt ttgtgcagaa aagccaaatg ggtggaggca gcccc
//
LOCUS       DATIQF010000184         2959 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_276470,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000184 DATIQF010000000
VERSION     DATIQF010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2959
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276470"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..622
                     /locus_tag="VLL95_02885"
     CDS             <1..622
                     /locus_tag="VLL95_02885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37835.1"
                     /translation="GQLSWKPIDGAVQYLVYKDGKLIAKTQEPAFRIAGELTAEYKVS
                     AIDADGFESFTSEPVMANALQAQVLEMEQFGVPSRLPYVNFTGTGFLELSNEANKVIT
                     WTVEVKEAGRYLLDFRYSNGSGPWNTDNKCALRSLYINEMYTGSMVFPQRGKDEWSEW
                     GYSNARIVALNAGKNTFRLALEPWNTNMNVEVNTAMLDALRLLRMP"
     gene            741..1217
                     /locus_tag="VLL95_02890"
     CDS             741..1217
                     /locus_tag="VLL95_02890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37836.1"
                     /translation="MKAKFLSSILAVLLLVVFSQSASSQAIGNAYKSALGVKFWPFAA
                     NFKTFVGTRDRAIEILAYFNDGFRVAGLYEFHTDLTTQGNLKLYAGFGGHAGYYSNTG
                     EKEGMSLGVGGAVGLDYKFTKLPLDLALDWQPSFEFLTPSTGFQGGRGGLAVRFAF"
     gene            1253..1723
                     /locus_tag="VLL95_02895"
     CDS             1253..1723
                     /locus_tag="VLL95_02895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37837.1"
                     /translation="MKKVLLSFIMAGFAMAASAQTLKDEFQYIQEIWGKEKKTLVNEA
                     IKLNGEEANKFWPLYDEYQVERQNFGKKRLKAIKLYADNFETMTDAKAQEITKMVLDN
                     NLGLDKLQAKYYKKMVKAVGAIKATQFLQLESYIDAQLKAAISDAIPFFPDPKK"
     gene            complement(1778..>2959)
                     /locus_tag="VLL95_02900"
     CDS             complement(1778..>2959)
                     /locus_tag="VLL95_02900"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR37838.1"
                     /translation="LHAPCTNNVNCITCHMPSKVYMGNDLRHDHSFRIPRPDLTDKYG
                     TPNTCNSCHSNKTAKWAAEKIAAQFGEKRRYHFAEDLVPGSQLDAQSENHLSKLLADT
                     AIPDIVRAATLRYFSLLGSNNAGQVMAQHTRDSNALVRRTALSGLLNYAPSVWMDAAS
                     KALEDPALGVRIAAANLMTSLPSSQIPSNYFAAFSRAKTELDQFIIFQTDFAQGNLQA
                     GDYYQRQNDLLTAEKFYRRAIAKDSQLVVARTNLAATMNATGRNKEALQQLQAASNID
                     PRNDHIWYSLGLLYAEMKDFAAAEKALAQCIALNKNNIRAQYNYGLLLQQQGKTAAAA
                     SVFSKALQVDPHNGDVLNALVILYAQQGQTEKALQYARVLKQYHGSNPAYANLLSQMG
                     L"
BASE COUNT          735 a          680 c          784 g          760 t
ORIGIN      
        1 agggcagctc agctggaaac cgatagacgg agccgtgcaa tacctggtgt ataaagacgg
       61 caaactgata gcaaaaacgc aggagcctgc tttcaggatt gccggcgaac tgactgccga
      121 atacaaagtg agtgccattg atgctgatgg ttttgaatca tttaccagtg agcctgttat
      181 ggccaatgcc ctgcaggcac aggtattgga aatggagcag tttggcgtgc cttcccggct
      241 gccttacgta aactttactg gcacgggatt cctggaattg tccaacgaag caaacaaggt
      301 catcacctgg acggtagaag tgaaagaggc cggcaggtac ctgcttgatt tccgctacag
      361 caatggcagc ggcccctgga ataccgacaa taaatgtgcg ctgagaagtt tgtacatcaa
      421 tgagatgtat actggttcca tggtttttcc acagcggggc aaggatgaat ggagcgagtg
      481 ggggtattcc aatgcgagaa tagtggccct taatgccggg aaaaatactt tccggttggc
      541 gctggagccc tggaatacca acatgaacgt ggaagtgaat actgccatgc ttgatgcctt
      601 gcggctgctg cggatgcctt aaaagtcaaa atttgtttca tttggtgaaa aggcaacgat
      661 tggtttaggt agtttgttcc aagccaaaag atatctttgc gccactcacc tcaaattaac
      721 accaaaccaa aacgcgtctt atgaaagcaa agttcctgag ttcaatactg gcagtattgc
      781 tgctggtggt tttttcacaa tctgcctcgt cacaagccat aggcaatgcc tacaaatctg
      841 cgttaggggt taaattctgg ccttttgcag ccaacttcaa aacctttgta ggtacccggg
      901 atcgggccat agaaatactt gcctatttca atgatggatt cagggttgca ggtttgtatg
      961 aatttcacac cgacctcacc acgcagggaa acctgaaatt gtacgcgggt tttggtggcc
     1021 acgcaggcta ttatagtaat acgggagaaa aagaaggtat gtcgctgggc gtcggtggtg
     1081 ccgtgggttt ggactacaag ttcaccaaac tcccgctcga ccttgccctt gactggcagc
     1141 cctcttttga attcctgaca ccctcaacag gcttccaggg cggccgtggc gggttggccg
     1201 tgcgttttgc attctgagcc aatgctattc tttaaatctt aaatacaaat acatgaaaaa
     1261 ggttctgtta tcatttatta tggcaggttt tgcaatggct gcctctgccc aaacgctcaa
     1321 agatgaattc cagtatatcc aggaaatctg gggtaaggaa aagaaaaccc tggtaaacga
     1381 agccataaaa ctgaatggag aagaagccaa caagttctgg ccattgtatg atgaatacca
     1441 ggtagagcgc cagaattttg gcaagaagcg cctcaaagca attaaacttt acgccgacaa
     1501 ttttgaaacc atgactgatg ccaaggcaca ggagatcacc aaaatggtgc tcgacaacaa
     1561 cctgggactg gacaaactgc aggcaaaata ttacaagaaa atggtgaagg cggtaggtgc
     1621 catcaaggct actcaattcc tgcaattgga gtcgtacata gatgcccaac tcaaagcagc
     1681 tatttctgat gcgattccat tcttccccga tcctaagaag taattcacgt gattgaataa
     1741 ttgcagcagg cttgccgaaa ggcgagcctg ttttgtttta caggcccatt tgggaaagga
     1801 ggttggcata agcagggttg ctgccatggt actgtttcag caccctggca tactgcaacg
     1861 ctttttctgt ttgcccctgc tgtgcataca gaattacgag tgcattcaaa acatcgccgt
     1921 tgtgcgggtc gacttgcagg gcttttgaaa acacactggc ggccgccgct gtttttcctt
     1981 gttgctgcaa aagcaaacca tagttgtact gtgccctgat gttgtttttg ttcaaagcaa
     2041 tgcactgtgc cagggctttt tcggcagcgg caaaatcctt catttccgcg tacagcagcc
     2101 ccaacgaata ccagatgtgg tcgttgcggg gatcaatgtt gctggctgcc tgcaactgct
     2161 gcagcgcttc cttgtttctt ccggtggcat tcatggtggc tgccaggttg gtacgtgcca
     2221 ccaccagttg gctgtctttg gcaatggccc tccggtaaaa tttctctgcg gtaagcaagt
     2281 cgttttggcg ctggtaataa tcgccggcct gcaaattgcc ctgtgcaaaa tcggtttgaa
     2341 agatgatgaa ttgatccagt tcggttttgg cacggctgaa agcggcaaaa taattggaag
     2401 gtatttggct ggatggcagg ctggtcatca ggttggcagc cgcgatcctt acaccgagtg
     2461 caggatcttc cagtgctttg gaagcggcat ccatccaaac cgatggtgcg taattcaaca
     2521 acccgctgag ggcagtgcgg cgcaccagtg cattgctatc cctggtatgc tgtgccatca
     2581 cctgtccagc attgttgctg cccaacagcg aaaagtagcg caaagtggct gcccgcacaa
     2641 tatcgggaat ggctgtatcg gcaagcagtt tgctcaagtg gttttcactc tgggcatcca
     2701 gttggctgcc aggcaccagg tcttctgcga aatgatacct gcgtttttcg ccaaactgtg
     2761 cggcgatctt ttcggcggcc cacttggcgg ttttgttgct gtggcacgaa ttgcaggtgt
     2821 tgggggtgcc atatttgtct gtaagatcgg gccgtggtat cctgaaacta tggtcgtggc
     2881 gaaggtcatt gcccatatac actttagatg gcatgtggca ggtgatacag ttgacattgt
     2941 tggtgcaggg tgcgtgcag
//
LOCUS       DATIQF010000185         3079 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_48573, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000185 DATIQF010000000
VERSION     DATIQF010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3079
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48573"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..262)
                     /locus_tag="VLL95_02905"
     CDS             complement(<1..262)
                     /locus_tag="VLL95_02905"
                     /inference="COORDINATES: protein motif:HMM:NF014703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HSR37839.1"
                     /translation="MDVLQAVIIAIVEGLTEYLPISSTGHMIIAERLLNVPNSDFTKI
                     FTVAIQLGAILSVLVLYWKKFIDFKNITFYLKLAAAVVPALVL"
     gene            complement(332..589)
                     /locus_tag="VLL95_02910"
     CDS             complement(332..589)
                     /locus_tag="VLL95_02910"
                     /inference="COORDINATES: protein motif:HMM:NF022741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3098 domain-containing protein"
                     /protein_id="HSR37840.1"
                     /translation="MSKKHTKDTHHAVVDHTPLFGKTNYLLMLAGGVVIALGMLLMAG
                     GKSADPNQFNYNEVYSTMRVTVAPILIMLGLGLEVFAIFKK"
     gene            complement(677..1546)
                     /locus_tag="VLL95_02915"
     CDS             complement(677..1546)
                     /locus_tag="VLL95_02915"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease-like cell division protein FtsX"
                     /protein_id="HSR37841.1"
                     /translation="MSQVGKLGTRKGRTSYVMAIVGVSLVLILMGVLGWIGINYTKLA
                     DYFRESVPVQVFLRETVNDTEKDQLVAQAKALPYVKSVEYKDKATAMKEWQAMSNEDF
                     TKFIDTNILPRSIEMKLQSKYVVPDTLKKIESIFVASPYVTDVKYPQNVVGNLTILTK
                     IGFALLAVAVLLAIVVIVLIDNTIRLAMFSNRFLIKTMQMVGATRGFIARPMNTKAII
                     NGAISAVIAIAVCWILLASLEGWVPELRAVHDNGLLLLLALLLLVLGVAISLFSTHRS
                     VVKYLKMKLDDLY"
     gene            1818..>3079
                     /locus_tag="VLL95_02920"
     CDS             1818..>3079
                     /locus_tag="VLL95_02920"
                     /inference="COORDINATES: protein motif:HMM:NF012361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HSR37842.1"
                     /translation="MEYNFNSIEKKWQAHWKESKAYQVPNQSDKPKYYVLDMFPYPSG
                     AGLHVGHPLGYIASDIYSRYKRLKGYNVLHPMGYDAFGLPAEQYAIEHGVHPAVSTEQ
                     NINNFRKQLDNIGFCFDWDREVRTCEPGYYKWTQWIFLQLFNSFFNRHQQKAEPINEL
                     IKSFEAAGNSEHPFPNEKFTLSTVNNQPSTTFTAADWKSFDEATRQTILMEYRLAYCG
                     YGEVNWCEALGTVLANDEVVNGVSERGGHPVVKKKLRQWYLRITEYADRLFQGLDTID
                     FSDAMKEMQTNWIGKSYGAEIDFAVKSEKATVPSMRVYTTRPDTIFGVDFMVVAPELD
                     WVKEITSAAQQAEVDKYLEYVNSRSERERQAEKKITGCFTGAYAINPFDGREIPIWIS
                     EYVLAGYGTGAIMAVPCGDERDFKFAKH"
BASE COUNT          790 a          808 c          778 g          703 t
ORIGIN      
        1 ccagcaccag cgccggcacc acagctgccg ccagtttcag gtagaaagtg atgttcttga
       61 aatcgatgaa tttcttccag tacaatacca gcacgctgag tatggcgccc aattgaatgg
      121 caacagtgaa gatcttggtg aaatcgctgt tgggcacatt caacagtctt tcggcaatga
      181 tcatgtggcc ggtagaagaa atgggcaggt attcggtcag tccctctaca atggcaatga
      241 tgacagcttg taaaacgtcc ataactacag gcaggcttag aaacagaaaa ggaaccaggt
      301 tcgctggttc cttttgtatg gttgaataag attacttttt gaatatcgca aacacctcga
      361 gccccaggcc caacatgatg aggatgggag caaccgtcac ccgcatggtg ctgtacactt
      421 cattataatt gaactggttg ggatcggcgc ttttgccacc ggccatcagc aacatgccga
      481 gggcgataac cacgccaccg gccagcatga gcaggtagtt ggtttttcca aacagcggtg
      541 tatgatctac cacggcgtgg tgcgtgtctt tggtatgctt tttcgacata gtctttccag
      601 gttgtggcag caaggtaagg gaatcgggcg tatgaaagat catcctatca tcgcccaacg
      661 ctttcctgcc ttgtatttag tacaggtcgt ccaatttcat tttcaggtat ttcaccacgc
      721 tgcggtgcgt gctgaacaag ctaatggcca cgcccaatac cagcagcagc agcgccagga
      781 gcagcagcaa gccattgtcg tgtacagccc gcagttcggg cacccagcct tccaggcttg
      841 ccagcaggat ccagcaaacc gctatggcta tcacagcgga aatggccccg ttgatgatgg
      901 ccttggtgtt catgggccgg gctataaagc cccgggtggc tcccaccatt tgcatggtct
      961 tgatgaggaa tcgattgctg aacatggcca ggcgaatggt attgtcgatg agcacaatca
     1021 ccacaatagc cagcagcacg gccaccgcca gcagggcaaa tcctattttg gtaagaatgg
     1081 tcaaattgcc caccacattc tgcggatact tcacatcggt tacgtagggg ctggccacaa
     1141 aaatggattc tatctttttc agcgtgtcgg gtaccacgta cttgctttgc agcttcattt
     1201 caatactgcg gggcagaata ttggtgtcta tgaacttggt aaaatcttca ttgctcatgg
     1261 cctgccactc tttcatcgcg gtggccttgt ctttgtactc aacggatttc acgtaaggaa
     1321 gtgccttggc ctgcgccacc aattggtctt tctccgtatc gttcacggtt tcccgcagaa
     1381 acacctgcac gggaacgctt tcgcggaaat aatcggcgag cttggtatag ttgatgccga
     1441 tccagcccaa cacgcccatc aaaatcaaca ccagtgaaac ccccacaatg gccatcacgt
     1501 acgaggtgcg gccttttcgg gtacccaatt ttcctacctg agacataata ttctgaaaat
     1561 gaggagttag taatccggaa acgaatggtt tcgggcccgg gttccgaaca aaaataacgg
     1621 aataagcctt tccttatttt tgcgtccctg tcttaacgat tgccgccggg cgctattgcc
     1681 ctgccatata atgattaaaa gcttctaacg ggcttttaac agggaatgcc aatttgaatc
     1741 ccgctggcgg ctatgagtgg tcgacgagtt ttcaaatgaa cttattaatg aacaacgaat
     1801 aaaccccaag gggcactatg gagtataatt ttaattcgat cgagaagaag tggcaagcgc
     1861 actggaaaga aagcaaagcc taccaggtac ccaaccagtc ggacaagccc aagtattatg
     1921 tgctcgacat gtttccttac cccagcgggg cgggcctcca cgtgggccat ccgttgggtt
     1981 acatcgccag cgatatctat agccgctaca agcgcctgaa aggatacaac gtactccacc
     2041 cgatgggcta cgatgccttt ggcctgcccg ccgagcaata tgctattgaa catggcgtgc
     2101 accccgcggt gagcacggag caaaacatca acaactttcg caaacagctc gacaacattg
     2161 gcttctgttt cgattgggac cgcgaagtac gcacctgcga gcccggctat tacaaatgga
     2221 cgcagtggat attcctgcag ttgttcaaca gctttttcaa ccgccaccaa cagaaggccg
     2281 aaccgatcaa tgaactgatc aaatcgtttg aagcggcggg caacagtgag catcccttcc
     2341 ccaacgaaaa gttcacacta tcaaccgtca acaatcaacc gtcaaccacc tttaccgctg
     2401 ccgactggaa aagctttgat gaagccaccc gccaaaccat cctcatggaa taccgcctgg
     2461 cctactgcgg ctatggtgaa gtaaactggt gcgaagccct gggtaccgtg ctggccaacg
     2521 acgaagtggt aaatggcgtg agcgaacgtg gcggccaccc ggtggtaaaa aagaaactgc
     2581 gccagtggta cctgcgcatc acggagtatg ctgaccgcct gtttcagggc ctcgacacca
     2641 tcgacttcag cgatgccatg aaggaaatgc agaccaactg gattggcaag agctatggtg
     2701 cagaaataga ctttgccgta aaaagcgaaa aggccaccgt tccatccatg cgtgtgtaca
     2761 ccacccggcc cgacacgatt tttggtgtcg acttcatggt ggtggcgcca gagttggatt
     2821 gggtgaaaga gatcacatct gctgcgcagc aggcagaagt agacaagtac ctggagtatg
     2881 taaacagccg cagtgaacgc gaacgccagg cggaaaagaa gatcaccggt tgctttaccg
     2941 gcgcttacgc catcaatccg tttgatggcc gtgaaattcc catctggatc agtgaatacg
     3001 tattggccgg ttatggcacc ggcgccatca tggccgtgcc ctgtggcgat gaacgcgact
     3061 tcaaatttgc gaagcattt
//
LOCUS       DATIQF010000186         3440 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_170031,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000186 DATIQF010000000
VERSION     DATIQF010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3440
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170031"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..951
                     /locus_tag="VLL95_02925"
     CDS             <1..951
                     /locus_tag="VLL95_02925"
                     /inference="COORDINATES: protein motif:HMM:NF026255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR37843.1"
                     /translation="VYASYRINFHPKYTFNTGLRYSFGVVNADFNSRFFPFPYTNYNL
                     KDGAPTGNLGLVFRPTQTWQINGNISSGFRMPNIDDMGKLFESSPGNVTVPNPNLESE
                     YAWSFEMGVVKHLPGKVRVEINAFHSILNNAIVRRPYSFNGQDSIFFDGAKSRVEALQ
                     NVGQAIVWGIQAMAEVWFARQFSAFTFLNYINGNETDDARNVQVPLRHAPPFYGSSGL
                     RYQLRGFRAELNAQYNAEVSNENLPPSEQTKTAIYATDENGKPYSPGWYTLNLRGSYA
                     FGNATIGFGWENITNQRYRPFSSGIVSPGSNFILSFRYGW"
     gene            1147..1716
                     /locus_tag="VLL95_02930"
     CDS             1147..1716
                     /locus_tag="VLL95_02930"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSR37844.1"
                     /translation="MTEDLILAGCLRNDPVAQRELYNRYSPKMLAVCYRFAPSREDAE
                     DMLQEGFIKVFTQIHTFQNKGAFEGWIRRIVVHTCINVLKRNKRFNEAVDLEYAVEAQ
                     TRENIPSIMQAKQVVECIRLLPVGYRTVLNLYAIEGYSHKEIGEMLDIGESTSRSQYT
                     RAKAMLEQVLVKKRIIEKPELRPELVAAF"
     gene            1786..3231
                     /locus_tag="VLL95_02935"
     CDS             1786..3231
                     /locus_tag="VLL95_02935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37845.1"
                     /translation="MKRKLNMDELESFIADSADEVRMYPSDRVWRNIDKELHGEKQWP
                     ALTFGAVLTTAIMLATLIFLHPDKDLFVIEPMATPATPSTKTIAKHQLPHSDFELAGK
                     RLLEKPALVTESETEEPGNVNAVADENTGSDNALAGSKFGMDEALIVLNYAGIENNSG
                     WAGQEWITPSLNAEVVTTTDQREVPQAAQPSVAQYLSSDAGMTEPGDLASKEEMVTAG
                     NDKASMPYSGQEQLQKQSKSQRWGIQYYATPSISYRILTEEKYYDKNLFPGGQIPATY
                     YNDVRRVVNQDAGFGAEAGAAITYAVTDRLSLKGGLQFNLRRYNINAYKSDVTQASAI
                     RLQQNGAFDTLMAASNIINFASDNPTQIQNQNIQLSMPIGFELAMAQFGKSAFFVSAT
                     LQPTLNISQQAWMITSDYQRYVQQQSLARNFNLNAGFEAFFRFKTKGNLSWQIGPQIR
                     YQLHSSFADKYPVKENLIDYGFKIGLSKTLH"
BASE COUNT          987 a          840 c          801 g          812 t
ORIGIN      
        1 gtctatgcca gctaccgcat caatttccac cccaaataca ctttcaacac gggactgaga
       61 tatagttttg gcgtggtcaa tgccgacttt aattcccggt ttttcccctt tccatacacc
      121 aattacaacc tcaaggatgg cgcccctacc ggcaacctgg gtttggtatt tcgccccacc
      181 caaacctggc agatcaacgg caacatcagc tcaggattcc gaatgcctaa tattgatgac
      241 atgggcaagc tttttgaaag cagcccgggc aacgtgacgg tgccaaatcc aaaccttgaa
      301 agtgaatatg cctggagctt tgaaatgggt gtggtaaagc acttgcctgg aaaagtaagg
      361 gtggaaatca atgcctttca ctccattttg aacaacgcta ttgttcgcag accttacagc
      421 ttcaatggac aggacagtat ctttttcgat ggggccaaaa gccgggtgga agcccttcaa
      481 aatgttgggc aggcgattgt ttggggcatt caggccatgg ctgaagtttg gttcgcccgc
      541 cagttctcag catttacttt cctgaattac atcaacggca atgaaaccga tgatgcccga
      601 aatgtgcagg taccgctcag gcacgccccc ccattttacg gcagttccgg ccttcgttat
      661 caattgcgtg gctttcgtgc agaactgaat gctcaataca acgctgaggt ctccaatgaa
      721 aatctgcctc ccagcgagca gaccaaaacc gctatttacg caactgatga aaatggaaag
      781 ccgtacagcc cgggctggta tacgctcaac cttcgtggca gttatgcctt cggcaatgca
      841 acgataggct ttggctggga aaacataacg aatcagcgct atcgcccctt tagctctgga
      901 attgtgtcac cgggctccaa cttcattttg tcgtttcgct atggatggta gtcattgccc
      961 tgccctaaaa gcccgcaccc tgtgcgggct ttttttaccc ggccatttct ggcacctccg
     1021 tgttggcgaa gcttctggac aaggttttac tatgccaatc ggcacaaaaa tgcatttcag
     1081 ttaacaacaa cgcagcgttt gagccccaaa aatgtctaca ttagagtagt tgattcccaa
     1141 ctacacatga ctgaagattt gatattggcc ggatgcctga ggaatgaccc tgtagcccag
     1201 cgggaactgt acaacaggta cagtcctaaa atgctggctg tatgctaccg cttcgctcct
     1261 tccagggaag atgcagaaga catgctgcaa gagggcttta tcaaggtatt cactcaaatc
     1321 cacaccttcc agaacaaggg tgcttttgaa ggttggatcc ggaggattgt ggtgcatacc
     1381 tgcatcaatg tgctgaaaag aaataaacgg ttcaacgagg cagttgatct ggagtatgca
     1441 gtagaagcac aaacccggga aaacattcct tccatcatgc aggcaaagca ggtggtggaa
     1501 tgcataaggc tacttccggt agggtacaga acagtattga atctgtatgc tattgaaggg
     1561 tatagccaca aagaaattgg agagatgctt gatattggcg aaagcaccag ccggagccaa
     1621 tacaccaggg ccaaagccat gctggaacag gtactggtga agaagcggat cattgaaaaa
     1681 ccagaactga gacctgaatt ggttgccgca ttttaaagca acgaggcaat cgatagcaga
     1741 taaaacacta cactacacgc caaaacgaga gcgccaacac ctcctatgaa aagaaaattg
     1801 aacatggacg aattagaatc gttcatcgcc gactcggccg atgaggtacg catgtacccg
     1861 tcagacaggg tgtggcgcaa catagataag gagctgcacg gcgagaaaca atggccagcc
     1921 ctcacttttg gtgctgtgct caccaccgca ataatgctgg cgacacttat ttttctgcac
     1981 cccgacaaag acctttttgt tattgaaccg atggcaacac ctgcgacgcc atcaactaaa
     2041 acaatcgcga aacatcagct tccgcattct gatttcgaac tggcggggaa aagacttttg
     2101 gaaaagcctg cattggttac ggaaagtgaa acagaagaac ccggaaatgt caatgctgta
     2161 gcggacgaaa acacaggatc agataatgca ttggcaggtt caaagtttgg aatggatgag
     2221 gcattgatcg ttttgaatta tgcaggcatt gaaaataatt cgggatgggc agggcaagaa
     2281 tggatcactc cttccttgaa tgcagaggta gtaacgacaa ctgaccaaag ggaagtaccc
     2341 caggcagcac agcctagtgt ggctcaatat ttgagtagtg atgcaggtat gactgaaccg
     2401 ggggatctgg ccagcaaaga agaaatggtg actgctggaa atgataaagc ctctatgccc
     2461 tattcaggtc aggagcaatt gcaaaagcaa tccaaatccc agcgttgggg aatccaatat
     2521 tacgctacac ccagcatcag ctaccgcatt ctcaccgaag aaaagtacta cgacaagaac
     2581 ctgtttcccg gggggcaaat acctgccacc tattacaacg acgttcgccg ggtggttaac
     2641 caggatgcag ggtttggagc agaagccggc gcagccatta cctatgcagt taccgatcgt
     2701 ctgagtttga aaggggggct gcaattcaac ttgcgcaggt acaacatcaa tgcctacaag
     2761 tctgatgtaa cccaagcctc cgccattcgc ctacagcaaa acggagcctt cgatacgctg
     2821 atggcagcat cgaatatcat caactttgct tcagacaacc caacccaaat ccaaaaccag
     2881 aacattcaac tgagcatgcc aataggattt gaattggcca tggcacagtt tggtaaatct
     2941 gctttttttg tgtctgccac cctgcaaccc acactcaaca tcagtcagca agcctggatg
     3001 atcacttccg attatcaacg ctatgtacaa cagcaaagcc tggcgaggaa ttttaacctg
     3061 aatgcaggct tcgaagcatt cttccggttc aaaacaaaag gcaatctttc atggcagatc
     3121 ggtccacaga tccgttacca gcttcactca tcctttgccg acaagtatcc tgttaaagag
     3181 aacctgattg attacggttt caaaattggc ttgtcgaaaa cactgcatta ataagcatcc
     3241 tgctaattta gccaccacaa taagtggtgg ttttttatga tgagatttct gtgttttgta
     3301 tgcttgacgg tgatcatggc atcttgccaa acaacaccgc ataaagaaga agcatcaaaa
     3361 gatgtttcaa aagattccgt tgcccgattc tatcctttcc cccaatacct gcaggatcag
     3421 atttcgtatg tcgatacaac
//
LOCUS       DATIQF010000187         3061 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_18108, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000187 DATIQF010000000
VERSION     DATIQF010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3061
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18108"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(67..480)
                     /locus_tag="VLL95_02940"
                     /pseudo
     CDS             complement(67..480)
                     /locus_tag="VLL95_02940"
                     /inference="COORDINATES: protein motif:HMM:NF013703.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
     gene            531..767
                     /locus_tag="VLL95_02945"
     CDS             531..767
                     /locus_tag="VLL95_02945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37846.1"
                     /translation="MAFGTVWLNAITGTGNTKVNLGIEVLTIVLYVVYVTLVLHKWHL
                     PITWAWASEWMYWTSTFGLAFAYMLSGRWKRKEI"
     gene            complement(807..1565)
                     /locus_tag="VLL95_02950"
     CDS             complement(807..1565)
                     /locus_tag="VLL95_02950"
                     /inference="COORDINATES: protein motif:HMM:NF045274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37847.1"
                     /translation="MKYFLTLALITLTGFSVFSQDPASLMAEGKKLEQQLKDAEAIEK
                     YKKAAFIQPSNQQAILKCAELSVAIGNRQAELDKKVQYFKDAYQFANAAYKLDSSKAQ
                     ANYMMAVVYGKFTEVEKKNDALVNYTRLIKNYADKTVKLDPQFARGWHVLGKWHLEMV
                     SLSSIKKAALKVIYSGTGSEATINEAIAHMEKCKTLEPYYCLNFYDLARAYQFNKQYE
                     KAIQLLEQLKKLPTRKQEDAEVKALGATLLQQLQ"
     gene            complement(1638..1994)
                     /gene="folB"
                     /locus_tag="VLL95_02955"
     CDS             complement(1638..1994)
                     /gene="folB"
                     /locus_tag="VLL95_02955"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004150 - dihydroneopterin aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006760 - folic acid-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HSR37848.1"
                     /translation="MISIELNDLQFFSFHGVHEEEQLLGNEFVVNAKLRYEPGTELVL
                     HLHETIDYSEVFAIIRDAMDKPTPLLETLVTQMSLTIRQRFPQLNAVEIAIEKKRPPV
                     QGWVGSATVKHSWQKP"
     gene            complement(2138..>3061)
                     /gene="trxB"
                     /locus_tag="VLL95_02960"
     CDS             complement(2138..>3061)
                     /gene="trxB"
                     /locus_tag="VLL95_02960"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HSR37849.1"
                     /translation="HCLIIGSGPAGYTAAIYAARAGLNPVLYQGIQPGGQLTITTEVE
                     NYPGYPEGIQGPEMMVHFEKQASRMGADIRYGIVTKVDFAERPFKVQVDEEFWLSADA
                     VIISTGASAKWLGLPSEERLNGHGVSACAVCDGFFFRGKEVAIVGAGDTACEEALYLS
                     KICSKVHMIVRKGEDGMRASKVMQDRVKNTANIEIYWNSVTDEILGENKVSGVRIKNT
                     KTDTLQEVPVSAFFVAIGHQPNSDIFKEWLDMDETGYLLTVPGTSKTNIEGVFAAGDV
                     QDKTYRQAVTAAGSGCMAALDAERYLGALGH"
BASE COUNT          705 a          808 c          751 g          797 t
ORIGIN      
        1 ttgctccaac agttgcaata aggggattta acactcctcc ctctcaacct cagcctcaac
       61 ctcaacctaa atctccttcc tcttccacct gcccgacagc atataggcaa aggcgaggcc
      121 aaaggtgctg gtccagtaca gccattcgct ggcccatgcc caggtaatgg gcagatgcca
      181 tttgtgcagc accagcgtta cgtacactac atacaaaaca atagtcagca cctcaatgcc
      241 taggttgact ttggtgttgc cggtgcctgt aatggcattc agccaaactg ttccaaacgc
      301 catgagtaac agcgcagtgc tcaccacacg cagcacagga atggcgtatt gaatgaatga
      361 ttcatcctgc ccgaatacag agagaaaggc atgggggaaa agattcacca gcaggcaggg
      421 cacaatcaca aacatcaggc tcagccttgt gatcttccag accagcggga tgacttccga
      481 ttttttatgc tgtccctgta ctgcgtgtgg taagcactgc gctgttactc atggcgtttg
      541 gaacagtgtg gctgaatgcc attaccggta ccggcaatac caaggtcaac ctgggcattg
      601 aggtgctgac cattgttttg tatgtagtgt acgtaacgct ggtgcttcac aaatggcatc
      661 tgcccattac ctgggcatgg gccagcgaat ggatgtactg gaccagcacc tttggcctcg
      721 cctttgccta tatgctgtcg ggcaggtgga agaggaaaga gatttaggtt gaggctgagg
      781 ttgagaagga ggagtgttaa atccccttat tgcaactgtt ggagcaacgt ggcacctagt
      841 gcttttactt cggcatcttc ctgcttgcgg gtaggcaact tcttgagttg ctccagcaat
      901 tggatggctt tttcgtactg cttgttgaat tgataagcac gggccaggtc gtaaaagttg
      961 agacagtagt aaggctccag ggttttgcat ttttccatat gggcaatggc ctcattgatg
     1021 gtcgcttctg agcctgtgcc gctgtagatc accttaagtg ctgccttttt aatactgctg
     1081 agcgatacca tttcaaggtg ccacttgccc agtacatgcc agcccctggc aaactgcgga
     1141 tccagtttca ctgttttgtc ggcgtaattc ttgatcaggc gggtgtagtt caccagtgca
     1201 tcatttttct tttccacttc cgtgaacttg ccgtacacca ccgccatcat gtaattggcc
     1261 tgggctttgc tggaatccag cttgtaggcc gcgttggcaa actggtatgc gtccttgaag
     1321 tactgtactt ttttatcaag ttctgcctgc cggttgccaa tggcaacgct taattcggca
     1381 cacttcagaa tggcctgctg gttgctgggc tgaatgaaag cagccttctt gtatttttcg
     1441 atggcctccg catccttcag ttgctgctcc agctttttgc cctcagccat aagcgaagca
     1501 gggtcctgtg aaaagaccga aaatccggtc aatgtgataa gagccagtgt cagaaaatat
     1561 ttcatgggcg attggattgc agcataaaga aacagcagaa tgccgccaat ggttgttaag
     1621 aagtcccgaa tcctgcatca gggcttttgc cagctatgct ttaccgtggc actgcccacc
     1681 catccttgta ccgggggacg ctttttttca atggctattt ccacagcgtt gagttgggga
     1741 aaacgctgcc tgatggtaag actcatttgg gttaccaggg tttccaacaa tggcgtgggc
     1801 ttgtccatgg catcgcggat gatggcgaaa acctcgctgt aatcaatggt ttcatgcagg
     1861 tgcaaaacca attcggtgcc cggctcatac cgaagctttg cgttcaccac aaattcattc
     1921 cccagcaatt gctcctcttc atgtacacca tgaaaggaga aaaactgaag atcgttgagt
     1981 tcaatggaaa tcatactgaa aggtgaatta gtggatcaat ggattgatga tgcaatgtta
     2041 accgccaggg cgcaaagaaa aaaaggaagg acagaatgaa tacacctctc tccttccctt
     2101 tcttcactta ttgacttatt cacttattgc cttttcctca atgccccaaa gcgccgagat
     2161 agcgctccgc atccaaagcc gccatacagc cactgcctgc ggccgttacc gcctggcggt
     2221 aggttttgtc ctgcacatcg ccggcggcaa acaccccttc aatattggtt ttgctggtgc
     2281 cgggcacggt gaggaggtag ccggtctcat ccatatcgag ccattccttg aagatgtcgc
     2341 tgttgggctg gtgcccaatg gccacaaaga aggcacttac cggcacttcc tgcaaagtgt
     2401 cggttttggt gttcttgatt cgtacacctg ataccttgtt ctcgccaagg atctcatccg
     2461 tcacactgtt ccagtagatc tctatgttgg ctgtattctt cacccggtcc tgcatcactt
     2521 tggaagcacg catgccgtct tcgcctttgc gcactatcat gtgcaccttg ctgcaaatct
     2581 tgctcaggta cagggcttct tcacaggccg tgtcgccggc ccctactatg gccacttctt
     2641 tgccgcggaa gaagaatcca tcacatacgg cgcaggcact tacgccatgg ccattcaatc
     2701 tttcttcgct gggcaaaccg agccatttgg cagaggcacc ggtggagatg atcaccgcat
     2761 cggcactcag ccagaattct tcgtccacct gcactttaaa gggacgctcc gcaaagtcaa
     2821 ccttggtgac aataccatac ctgatatcag cgcccatgcg gctggcctgc ttttcaaaat
     2881 gcaccatcat ttccggcccc tgtatgcctt cgggatagcc aggatagttc tccacttcag
     2941 tagtaatggt aagttgtccg cccggctgaa tgccctggta caaaacaggg ttgagaccgg
     3001 cacgagccgc ataaatggca gccgtatacc ctgcaggtcc gctgccgatg atcaaacagt
     3061 g
//
LOCUS       DATIQF010000188         1785 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_200635,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000188 DATIQF010000000
VERSION     DATIQF010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1785
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200635"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(186..899)
                     /locus_tag="VLL95_02965"
     CDS             complement(186..899)
                     /locus_tag="VLL95_02965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37850.1"
                     /translation="MKKLLLLFMCLPVFVMAQDNVVNSQRVFPKIDKVAQFEKALAAH
                     VQKFHTGKWKWRVFTIASGPDVGGYHITEGPMNWDDIQNRGDLGAAHMADWNTNIAPL
                     LTKQTNSYATYMAELSTVALTDYSNWININHLEIRPGFRGDLRDLLVKMKKGWEADGS
                     TNAVYNSSSSGVPAYTIVTRYKNGLKERSANYRPPFDQTYEKVNGAGSWNAWVAAYKA
                     AVERSWSELLEFQPSLSSK"
     gene            complement(1470..>1785)
                     /locus_tag="VLL95_02970"
     CDS             complement(1470..>1785)
                     /locus_tag="VLL95_02970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37851.1"
                     /translation="KTNMEEFLKFQDLMFGDIVKARNALFDTWYFAEIMDFNLSSEKI
                     DSFKKKQFTLVSNKKEDFIQYANLCQLRSWNFRHMLTRLGTVSKRADSLLALLKKEYE
                     LE"
BASE COUNT          464 a          382 c          392 g          547 t
ORIGIN      
        1 cccattttcc tcttcttcac cgccatgatg tttttgcagt tgctgttcgt acgctttatg
       61 atgcccgaaa ccaaaggcgt ggcgctggaa gacatgcagg tgagggtggg gcattgagat
      121 aaggcaaaaa gaaaacagcc ttgcttaaca agcaaggctg tctaatctgt aaatattcgc
      181 tttggttact tggaactcag acttggttgg aattccagca attcactcca ggaacgttcg
      241 actgctgctt tgtaagcggc aacccaagcg ttccagctgc cggcaccatt tactttttca
      301 taggtttgat caaatggcgg acggtagttg gcagatcttt ctttcaatcc gtttttataa
      361 cgcgttacga tggtataggc tggcactcca gatgaactgg aattgtaaac cgcattggta
      421 gagccatctg cttcccaacc cttcttcatc ttaacgagta aatcccgaag atcacctcta
      481 aaaccgggcc tgatttcaag atggttgatg ttgatccagt tggaataatc cgttaaggca
      541 acagtactca actcagccat gtatgtagca tacgagttgg tttgtttggt aagcagcggg
      601 gcaatattgg tattccagtc ggccatgtga gcggcaccca ggtcgccacg attctggata
      661 tcgtcccagt tcatggggcc ttctgtaata tggtagccgc cgacgtcagg gccagaagcg
      721 atggtaaaca cccgccactt ccatttgccg gtatgaaatt tctgcacatg cgctgccagc
      781 gctttttcaa attgtgcgac cttgtcaatt ttcgggaaca ccctttgaga gttaactaca
      841 ttgtcctgtg ccataacaaa tacaggcagg cacatgaaga gaagcaacag ttttttcatt
      901 gttgtttggt ttggtgataa ataaaacgat aaccttaaat ctaagcgaag gataggcttc
      961 ttgccagtgc ttgggtaatt agttggggtg cactgatcca ggctttgatg gtttagggcg
     1021 tattaaatct actcgatact tttttgaaat gcaatagttt agaaaaaaac tttattcgaa
     1081 atggtaatgg tatttctgct tttgtgcttt gcagtctgac ttatcatttg tttcacgctg
     1141 atataatctg tttgatcaat gcctattcct gatggcgcca tcattggcga gactttattt
     1201 ttgcctccat gtgcaagccc tgatgtagat tctgcgcatg aagttccttt gccatctcaa
     1261 ctataatcct tgagtaaccc aattttccga tttagaaact tattggtaag cgccatggtt
     1321 acactaagta taactgcagc gaatagtagg aatactttcc aaggagaacc atttcggcgc
     1381 cggaattcga atgtttggtg taatacaacg ttccattgaa gattatgcaa gtagtccatc
     1441 ctgaatagca ggcaggctgc attgcaggtt tactccagtt cgtattcctt tttaagcaaa
     1501 gccagcaaac tgtcggctct tttggagacg gtgccaagcc tggtaagcat atgcctgaaa
     1561 ttccatgaac gcaactggca aagattcgca tactggatga aatcttcttt cttgtttgac
     1621 acgagtgtaa actgcttttt cttgaaagag tcaatttttt cactacttag attgaagtcc
     1681 atgatttcgg caaagtacca tgtatcaaac aaagcatttc ttgctttgac aatgtcgcca
     1741 aacatcaaat cctggaattt taaaaattct tccatgtttg tcttc
//
LOCUS       DATIQF010000189         1837 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_33277, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000189 DATIQF010000000
VERSION     DATIQF010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33277"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1139)
                     /locus_tag="VLL95_02975"
     CDS             complement(<1..1139)
                     /locus_tag="VLL95_02975"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSR37852.1"
                     /translation="MNNQDKFLEQFRHAARQSEQERFPGFEEVWQQVEERLDAQEKKR
                     APSVVAIRWMSVAAAVLVMVAIGMLLWKKDAPATEMVKQQQPDSTMVTPLVPQQEIAR
                     LEESPRKKTAPVIVEQKQASVPQPNQATADTSTFESSPELVTALKPVADNSAQPTPVK
                     SSKDLASGIITDANGKPLPGSTIIIKGSNRGVATDSAGRFSIEANEGDKLSVAMLGFD
                     PKEVIVSPGRELKVALDQATSSLSEVVVVGYAATKKKSLTASVQQVRGSNVRSKSANA
                     AAPLQGKAVGVYINAETSGVDYAIRIRGINSMQSANDPLYVVNGVPVGRSEFSKLQPA
                     EIERVDVLKDAAASAIYGSKASNGVVIISTKDKTRKEQQQVQKFN"
     gene            complement(1123..1677)
                     /locus_tag="VLL95_02980"
     CDS             complement(1123..1677)
                     /locus_tag="VLL95_02980"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSR37853.1"
                     /translation="MTDEQMISACQAMDRTAQRILYERMAPKLYATCRRYLRHQYEIE
                     DVLAESFFIIFTRVHQLSEVKAFEGWARRVCVHQCLAYLRKKTSFSIHLDEASEHQLP
                     DTGDEMPLESEDLMRLLLQLPDGCRTVFNLHIIEGYSHKEIAGMLGISEGTSKSQLNF
                     GRKKLQELVRQFYYQTYQRHEQSR"
BASE COUNT          427 a          493 c          395 g          522 t
ORIGIN      
        1 taattaaatt tctgtacctg ctgttgctcc ttcctcgtct tgtctttggt ggaaatgatt
       61 accaccccat tgcttgcctt gctgccgtat atcgccgatg cagcggcatc tttcaacaca
      121 tccacccttt caatttcagc aggttgcaat tttgagaatt cacttctgcc aacggggact
      181 ccgttaacca catacaaagg atcattggct gattgcatgc tattgatgcc tcgtatgcgg
      241 atggcgtaat ctacacctga agtctcagca ttgatataaa ccccaaccgc ctttccctgc
      301 aagggagccg ccgcattggc actctttgac cgcacattgc tgcctcttac ctgctgtacc
      361 gaggcagtca ggcttttctt cttggtagca gcgtagccta ctaccaccac ttcactcaat
      421 gaactcgtgg cctgatccag cgctaccttc agttccctgc ctggtgaaac gattacctct
      481 ttgggatcaa aacctaacat agccacgctc agtttatcgc cttcattagc ttctatgctg
      541 aaccggcccg ccgagtcagt tgctactccg cgattcgatc ccttgataat tatcgtgctg
      601 cctggcaagg gcttaccatt agcatcagtt ataatgccgc tcgccaaatc tttagatgac
      661 tttactggag ttggctgggc cgaattatca gctactggtt tcagtgcagt caccaactca
      721 ggtgatgact caaaagtgct ggtatccgca gttgcctggt tgggctgagg caccgaggcc
      781 tgcttttgtt caacaataac aggtgcggtc tttttacggg gtgattcttc cagcctggct
      841 atttcctgct gaggaaccaa gggcgtaacc attgtactat ctggctgctg ttgcttcacc
      901 atttcagttg ccggcgcatc cttcttccac agcaacatcc ctatggccac catcactaaa
      961 acggcagcag ctactgacat ccaccgaatt gcaacgacag acggggctct tttcttttcc
     1021 tgcgcatcca ggcgttcctc tacctgctgc catacttctt caaaaccagg aaaccgttct
     1081 tgttccgatt gccgggcagc atgcctgaat tgttccagaa atttatcttg attgttcatg
     1141 tctttgataa gtttggtaat agaattgacg caccaactcc tgcaacttct tgcgtccgaa
     1201 attcaattgt gacttcgaag tgccttctga tattcccagc atgccagcga tctctttatg
     1261 tgaataccct tcaatgatgt gcaagttgaa aacagtacgg catccatcgg gtagctgcaa
     1321 aagcaagcgc atcaggtctt ctgattcaag cggcatttca tctccggtat ccggaagttg
     1381 gtgctccgag gcttcatcca ggtgaatact gaaactcgtt ttctttctca ggtaagccag
     1441 gcactggtgc acacaaacgc ggcgagccca cccttcgaaa gccttcactt ctgacagctg
     1501 atgcacccgg gtgaaaatga taaagaaact ttcagccaac acatcttcta tttcatattg
     1561 atgccgcagg taccgcctgc aggtagcgta cagtttgggc gccattcttt catacaatat
     1621 gcgttgagcc gttcggtcca ttgcctggca ggctgatatc atttgttcgt cggtcactcg
     1681 gttgatgctt tattactaag agtcaaaatc cggaagaaag gttggaaaga gatgcaaatt
     1741 ttttttcatt gcccaaacaa gaccttcaga aaataaaaaa ggccgcaagg cctttcgtta
     1801 cgatttgaag tcataatggc taagatacct gcccctg
//
LOCUS       DATIQF010000190         4118 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_48637, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000190 DATIQF010000000
VERSION     DATIQF010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4118
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48637"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..276
                     /locus_tag="VLL95_02985"
     CDS             <1..276
                     /locus_tag="VLL95_02985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37854.1"
                     /translation="VLVETSPTPYNWISFVFIADIPYQEAPYCKEGTLQWIPQSQLKE
                     IPTPVTDWHIYDYLRQGKKFHFDAHYDANLNLLHMKDEWNDIIVFSK"
     gene            282..1100
                     /locus_tag="VLL95_02990"
     CDS             282..1100
                     /locus_tag="VLL95_02990"
                     /inference="COORDINATES: protein motif:HMM:NF019590.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NIPSNAP family protein"
                     /protein_id="HSR37855.1"
                     /translation="MMLNTNIRRGVAWLFPLLLIQVCSILTANVSFGQKRNSREHYQL
                     TVYHFSSASQEAALDRYLQNAWLPALHESGIRNIGVFKPIGNDTASDKRIYVVMPLSK
                     LSQLTKLPAMLGKNSTYQSNAAEYLNAPYTAPPYQRMEVILLKAFSMAPQMQLPQLKG
                     PREERVYELRSYESATEKIFRNKVHMFNEGDEIGLFKKLNFNAVFYSEVVSGPRMPNL
                     MYMTSFENKADRDAHWKAFGESPEWKKLSTMPEYQHNVSHIDTYFLRPTAYSDY"
     gene            1229..1786
                     /locus_tag="VLL95_02995"
     CDS             1229..1786
                     /locus_tag="VLL95_02995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37856.1"
                     /translation="MKSRPNLYSCCIQAFFFMALTSWSFALQAQSMQKYWIGNSGCSV
                     NLPAEQADTEFSLDADGNKVYITKATQLQNGVEYQFYIAVLQLHDEDADANEKLQEFA
                     DYIKSTQLIADAAGYRKINNLVRGKMAKGISDTWTDQNGTEYQVTGWAKGRTLALMYV
                     AGEKPYPSSAQLNGFFNSFQFPSAF"
     gene            complement(1880..3040)
                     /locus_tag="VLL95_03000"
     CDS             complement(1880..3040)
                     /locus_tag="VLL95_03000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37857.1"
                     /translation="MKTESIWRILASVMLLLVLAACQKQLLPDDTTNMKEKDLAGLAP
                     AQAGLVSTPIQVYGVWHAGNDYCTWATERTVAEFDSKNHWIIDRGNGQPSVNVVVLSF
                     VQPLKLLNKTNDANTVNGVPKGMTADIVNYFKSRGIRVMLSIGGITYTDYWNTALASN
                     PTQLGLNAAAVAAQLGVGIEIDYEQSSRPNITGLQQFINAYRSVHPYDASGNNHAARL
                     TIDLAAGDRWLIELCRYATANWLTSANPVLDYANAMVPSKQPTSAADATANWQEHIDG
                     KPQYAPPILPLAPAKFTGGLYLVKGKTASYECASFAKSLQAACSTYVQTVLPNPKGPG
                     VTPGMLGYMFWAAEKPSTRMTSTAPPNSCEGGIGAGATAFNIPIPMPPLRQQ"
     gene            3242..>4118
                     /locus_tag="VLL95_03005"
     CDS             3242..>4118
                     /locus_tag="VLL95_03005"
                     /inference="COORDINATES: protein motif:HMM:NF023431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3500 domain-containing protein"
                     /protein_id="HSR37858.1"
                     /translation="MKFPCRLLMAGILVPTLLLAQEPADYKNAITTAASNLIASFSPL
                     QQRTAMLAFTDTARMKWNNLPVGLRARTGISIGNMTEEQRKGLHKLLSAALSSQGYLK
                     ATGVMHLDNLLNMFIDTAYQRKEINDTLKQFLIDLQWSHRNYFLAFFGKPTDTHWGFK
                     IEGHHLSVNYTFNGDHISVTPWFIGTDPAEMPFTQYAGWRVLGAEEDLGLELIHKLSA
                     AQLQKATLSKEVPRDIITVAETGIRLIDYWGIKASELNREQKALLTYIIREYVFNLEY
                     EKAVIEYEKIIKAGID"
BASE COUNT         1126 a         1064 c          949 g          979 t
ORIGIN      
        1 gttttagtgg aaacctctcc cactccgtac aactggatca gttttgtttt catagccgac
       61 attccttacc aggaagcgcc ctattgcaag gaaggaacct tgcaatggat cccacaatca
      121 caactgaaag aaatacctac acccgtgacc gactggcata tttacgacta tctccggcag
      181 ggaaagaaat tccattttga tgcccactac gatgccaacc tgaacctgct gcacatgaag
      241 gatgaatgga atgatataat tgtcttttca aaataaacgc tatgatgctc aacaccaata
      301 tccgccgcgg cgttgcctgg ttattccctt tgctgttgat ccaggtatgc agcatattga
      361 cagccaacgt atcgtttggc caaaaacgaa acagcaggga gcactaccag ctgacagttt
      421 atcacttctc cagcgccagc caggaagctg cgcttgatcg ttatttacaa aatgcatggc
      481 tccccgcgtt gcacgaatcg ggcattcgaa acattggagt gttcaaaccg attggcaatg
      541 acaccgcctc cgacaaacgc atttacgtgg taatgccgct cagcaaactc agtcagctta
      601 caaaacttcc tgccatgctc gggaagaata gcacctacca gtcgaatgcg gctgaatacc
      661 tcaatgcccc ttacactgcg cctccctacc aacgcatgga agtcattttg ctaaaggctt
      721 tttcaatggc gccgcaaatg cagttgccac aattgaaagg ccctcgtgaa gagcgggtgt
      781 atgaattgag aagctatgaa agtgcaacgg aaaagatctt tcgcaacaaa gtgcatatgt
      841 tcaacgaggg tgatgagatt gggctgttca aaaaactcaa cttcaatgcg gtgttctaca
      901 gcgaagtagt gtcgggccca cgcatgccca acctgatgta catgaccagt tttgagaaca
      961 aggccgaccg cgatgcgcac tggaaagcat ttggcgaatc gcccgaatgg aagaaattgt
     1021 caaccatgcc ggaataccag cacaatgtct cgcacattga cacctacttc cttcgtccaa
     1081 ccgcctattc tgattattga gcgctggctg ataacaggga gtgcataact attggtcgcg
     1141 gcacaaagaa tagcagccta tttttcttgt cggaaagctg tggcaaggtt gttgagcgca
     1201 ttgctaactc gaaaacccat tactgcttat gaaatcccgg cccaatctct actcctgctg
     1261 tattcaggca tttttcttca tggcacttac cagctggtct tttgccttac aggcacaatc
     1321 gatgcagaaa tactggatag gcaacagcgg atgcagtgtg aacctgcctg ctgaacaggc
     1381 agacactgaa ttctcactcg atgccgacgg caacaaagtg tacattacca aagccacaca
     1441 gctgcaaaac ggcgttgaat accaatttta catagcggtg ctgcaactgc atgacgaaga
     1501 tgctgatgcc aatgagaaat tgcaggaatt tgcggattac atcaagagca cccaactgat
     1561 tgccgacgct gccggctatc ggaaaataaa caacctggtg cgagggaaaa tggccaaagg
     1621 aatcagtgat acctggaccg accagaacgg tactgaatac caagttactg gatgggccaa
     1681 aggaaggacc ctcgcattga tgtacgtagc gggtgaaaag ccataccctt catcggcaca
     1741 gctcaatggc ttcttcaaca gttttcagtt cccttccgca ttctaaaagc attcgcttca
     1801 ccaaccgcat acaaccaggt ggcacttgca cttgcttgtt catttttttg cgcatccaaa
     1861 ttcatcgcca acctgaaact tactgctgtc tcaacggagg cataggaata ggaatattga
     1921 aagcagtagc ccctgcgcca ataccgcctt cgcaactgtt aggcggggct gtggatgtca
     1981 tacgcgtaga cggtttttcg gccgcccaaa acatataacc cagcattccc ggcgttaccc
     2041 ctggcccttt gggattgggt aataccgttt gcacataagt gctgcacgca gcctgcagcg
     2101 attttgcaaa actggcacat tcatatgagg ccgtcttgcc cttcaccaag tacaagccac
     2161 cggtgaactt tgcaggtgcc agtggcagaa ttggtggcgc atattgcggc ttgccatcaa
     2221 tgtgttcctg ccagttggca gtggcatcgg cagcactggt gggttgcttg ctgggcacca
     2281 tggcattggc ataatccaaa accgggttgg cactggtgag ccagttggca gtggcatacc
     2341 ggcacaattc aatcagccaa cgatcgccag cagcaagatc gattgtcagc cgggcagcgt
     2401 ggttgttgcc tgacgcatca tatggatgaa ccgacctgta agcattaatg aactgctgca
     2461 gcccggtaat attgggtcgg ctgctttgct catagtcaat ctcaatgccc actcccaatt
     2521 gtgctgccac agcggccgca ttaagcccca attgtgtggg attgctggcc agggcagtat
     2581 tccagtaatc tgtgtaggta atacctccaa tggacaacat gacacggatg ccgcgacttt
     2641 tgaaatagtt gacgatatca gcagtcatac ccttgggaac accgttgaca gtgtttgcgt
     2701 cattggtttt gtttagcagt ttgagtggct gtacaaaact cagcacgacc acatttactg
     2761 atggctggcc attcccgcgg tcaatgatcc agtggttttt ggaatcaaat tctgccacgg
     2821 ttctttcggt ggcccatgtg caatagtcgt tgcctgcatg ccaaacaccg tacacctgaa
     2881 tgggtgttga taccaaccct gcctgggcag gcgccaaacc agcaagatct ttttccttca
     2941 tgttcgtagt atcatccggc agcaattgtt tctgacaagc tgccaatacc aaaaggagca
     3001 tcaccgatgc cagtatcctc catatgcttt cagttttcat aaatcgatct tttgaatgcc
     3061 caatagaata aaaacaccac agaagttacc aagaaggcag gccagaataa atgacatcag
     3121 atgcacaaaa accagcaaac cttaagtaac ttatagagtc ttggtcattg gtttgctgtt
     3181 cccccaaaaa ggcaactgag atttgaagaa tattttgaat atcttacttc aaatcaacca
     3241 catgaagttt ccctgtcgcc tgctcatggc cggcattttg gtacccaccc tgttgcttgc
     3301 ccaggagccc gctgattaca agaatgccat aacaacagca gcctccaatc ttatcgcctc
     3361 cttttcaccc ttgcagcagc gaactgccat gctggctttt accgacacag cccgcatgaa
     3421 atggaacaac ctgccggtag gactgcgggc aagaacaggc atcagcattg gcaacatgac
     3481 agaagaacaa cgaaaggggt tgcataaact attgtcggcg gcgctcagtt cgcaaggcta
     3541 cctcaaagcc accggggtga tgcatctcga taacctgctg aacatgttca ttgataccgc
     3601 ctaccaacgc aaagagatca acgatacact caagcaattc ctgatcgacc tgcaatggtc
     3661 gcaccgcaat tattttctgg ccttttttgg gaagcccact gacacccatt ggggttttaa
     3721 aatagaaggt caccatttgt cggtcaacta cactttcaac ggcgatcata tttcggtaac
     3781 gccctggttc attggcaccg atccggcgga gatgcctttt acgcaatacg ccggctggcg
     3841 ggtgctcggc gccgaagaag acctgggatt ggaactgatc cacaaactgt cggcagcaca
     3901 actgcaaaaa gccacccttt ccaaagaagt gccaagagac attattaccg ttgccgaaac
     3961 aggcattcgg ctcattgatt actggggcat aaaagccagc gaattgaaca gggaacaaaa
     4021 ggcactcctc acctacatta ttcgggaata cgtatttaac ctggaatatg aaaaagccgt
     4081 gattgaatac gagaagatca tcaaagcggg aatagaca
//
LOCUS       DATIQF010000191         1636 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_78933, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000191 DATIQF010000000
VERSION     DATIQF010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78933"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            70..1119
                     /locus_tag="VLL95_03010"
     CDS             70..1119
                     /locus_tag="VLL95_03010"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: protein motif:HMM:NF006829.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HSR37859.1"
                     /translation="MPSSVIAGIGMYVPSHVVTNQDLMKYMETTDEWIQERTGIKERR
                     YAHRTEETTTTMAVEASKIAIERAGITPQDIDFIVFATLCPDYYFPGCGVLLQRAMGM
                     KQIGALDVRNQCSGFLYALSVADQFIKTGMYKNILVVGSEKHSFGLDFTTRGRNVSVI
                     FGDGAGAVVLQPTEEAGRGILSTHLHSDGNEAEILAMYNPGTHANHWKEEKYASFDEA
                     EIGQMFFSHAMIDDAQIFPYMDGPAVFKTAVVKFPEVIMEALDKNSLTTDDIKVLIPH
                     QANLRISQFVQHKLKLRDDQVYNNIQRYGNTTAASVPIALCEAWQEGHIQKGDLVCLA
                     AFGSGFTWASALIRW"
     gene            1132..1575
                     /locus_tag="VLL95_03015"
     CDS             1132..1575
                     /locus_tag="VLL95_03015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37860.1"
                     /translation="MEKRKAGIDVIHDVLQATSKALPNAALVTSLLQQYHERGFLTKK
                     QLEALHIKASKVKDMPPGKLATLQAIINKMPNRFKSEKPEAAPIYEKSLPLRVVIAAI
                     LEKHPTHKQVLLLKAKYDTNTPLSPQEVKDLAGFYRLLMKPGSNS"
BASE COUNT          439 a          416 c          422 g          359 t
ORIGIN      
        1 tgttggttga ggggcttgct gtcttgcacg gccggttttt gttatattgc tacacttaat
       61 ctgattgcta tgccttcttc tgttattgcc ggtatcggca tgtatgtgcc cagccatgtg
      121 gttactaacc aggatttgat gaaatatatg gagaccaccg acgagtggat ccaggagcgt
      181 accggtatca aagaacggcg gtatgcgcat cgcaccgaag aaaccaccac caccatggca
      241 gtggaagctt ccaaaattgc tattgaacgg gcaggcatca cgccacagga tattgacttc
      301 attgtttttg ccacgctttg ccccgattat tattttccgg gctgcggcgt attgctgcag
      361 cgtgccatgg gcatgaaaca gattggtgcc ctggatgtgc gcaaccagtg cagtggtttt
      421 ttgtatgcac tgagtgtagc tgaccagttc atcaaaacgg gcatgtacaa aaacatactg
      481 gtggtgggca gcgaaaaaca ttctttcggg ctcgacttta ccacccgtgg ccgcaacgtg
      541 agcgtgatat ttggcgacgg cgctggcgcc gtggtgctgc aacctaccga agaagcaggg
      601 cgaggcatcc tgagtacgca tttgcacagc gatggcaacg aagcggaaat actggccatg
      661 tacaaccccg gcacgcatgc caaccattgg aaggaagaga aatacgccag ttttgatgag
      721 gccgaaattg gccagatgtt tttcagccat gccatgatcg acgacgcaca aatttttccg
      781 tacatggatg gcccggcggt tttcaaaaca gcagtggtca aattcccgga agtgatcatg
      841 gaagcgcttg acaaaaacag tttgaccacc gacgacatca aagtgctcat tccccaccag
      901 gccaatttgc gcatcagcca gtttgtacaa cacaagctga aactgcgcga cgaccaggtg
      961 tacaacaaca tacagcgcta tggcaatacc actgccgcca gtgtacccat tgcattgtgc
     1021 gaagcctggc aggaaggcca tatccagaaa ggcgacctgg tatgcctggc tgcatttggc
     1081 agtggcttta cctgggccag tgcgctgatc cgttggtagt aattttgctg catggaaaaa
     1141 cgaaaggcag gcatagatgt gatccacgac gtgctgcagg ctaccagcaa ggcattgccc
     1201 aatgctgcat tggtaaccag cctgctgcag caataccacg aaagaggatt cctgactaaa
     1261 aagcaactgg aggctttgca catcaaagcc agcaaagtga aggatatgcc acccggcaaa
     1321 ctggctacgc tgcaagccat catcaacaaa atgcccaatc gcttcaagtc ggaaaagccg
     1381 gaagcggcac ctatttacga aaagagcctg ccgctgcggg tagtcatcgc cgccatcctg
     1441 gagaagcatc ccacccacaa gcaggtgctg ctgctgaaag ccaagtacga taccaatacg
     1501 ccgctttcgc cacaggaggt gaaagacctg gccggctttt accgattgct gatgaagccc
     1561 ggcagtaaca gctaatccta gtgagcaaca gaacaataat tattcaacct tcaatacata
     1621 attaaaagga tagtat
//
LOCUS       DATIQF010000192         3320 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_33284, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000192 DATIQF010000000
VERSION     DATIQF010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3320
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33284"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1063)
                     /locus_tag="VLL95_03020"
     CDS             complement(<1..1063)
                     /locus_tag="VLL95_03020"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSR37861.1"
                     /translation="MCSLFFPLQLWSQQSAGDTLVGADSVAIMGRAFGSLGRNLSSAA
                     VRTTAFNQLEAFNSTSLLPAINTLAGVRMEERSPGSYRLNIRGSSLRSPFGVRNVKFY
                     WNGLPFTDAGGNTYFNQVALNSMRQLEILRGPAGSMYGAGTGGLVLMSSLAGNWKPGA
                     SVELSLGSFGMATALAQVEFGKEQQRNRISYAHNQADGYRIQSAMRRDNVSWTSHWRS
                     EKSQLTASVMYTNLYYQTPGGLTEAEFKSNPQAARPATPGFPSAVQAQAAIWQQNMIA
                     GLNHVLSLGERWTNTNAVFGSFALVENAAIRNYESRVEPNLGGRTVFAFQHKKETMLL
                     KWQTGLEYQAGFFNTQVSKN"
     gene            1138..2460
                     /locus_tag="VLL95_03025"
     CDS             1138..2460
                     /locus_tag="VLL95_03025"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HSR37862.1"
                     /translation="MNNANKLGLFDLTIIVISLVIGMGIFKTPAGIAAKSGTETIFYS
                     AWLIGGAIALTGALVFAEIGARLPVVGAYYKVFSYAYHPAVGFTINTIILISNAASLA
                     VVTLIGAEYCSDLLFGKQMGYLFDISFSMVAVSIFFVVNLLGLKTSSRTQNVLMIVKV
                     GLILILISALFAGQAIEPHGYSSDPVRTYDGSNGLLLLVVSMVAVSFTYGGYQQTINF
                     GGEVDKKGTLQKGIIIGIIIVILLYLTVNYAYVQVIGYEKMKNATSIGALLFEAWFGR
                     VGAKVFDFAMFISVLAYVNILLMSNPRVMYAMATDGVLPKIFSYQHPKTKALVPGLVT
                     FSVITVAVTFFGKGVNNILGFSIFLDSMGFITCALALLILRKRHVNDHLVQQGMLTRI
                     QPALALFFMLAYAIVATAVAIDNWKAALTGVGLVGLFVVVYFLVIRKK"
     gene            2531..2998
                     /gene="tnpA"
                     /locus_tag="VLL95_03030"
     CDS             2531..2998
                     /gene="tnpA"
                     /locus_tag="VLL95_03030"
                     /inference="COORDINATES: protein motif:HMM:NF013921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HSR37863.1"
                     /translation="MAGTYSQIYLQFVFAVKGRISLIPKQHKEELHRYMTALVQNRKA
                     KMLAVNCMPDHTHLFVGFKPSVLISDFIKEVKVESNLFVQSKRWLPGKFEGQDGYGVF
                     SYSHSQIDSVIRYILTQEEHHRKQTFRDEYTAFLKAFDVPYNEQYLFEFIENI"
BASE COUNT          771 a          841 c          816 g          892 t
ORIGIN      
        1 tgtttttgct tacctgtgta ttgaaaaatc ccgcctggta ttccaggccg gtctgccatt
       61 taagcagcat ggtttccttt ttgtgttgga aggcaaatac ggtgcggcct cccaggttgg
      121 gttccacccg gctctcgtaa ttgcgtatgg cagcattctc taccaacgcg aacgatccga
      181 atactgcatt ggtattcgtc cagcgttcac cgagtgatag cacatgattc agccccgcta
      241 tcatattttg ctgccagatg gcggcctgcg cctgcactgc cgaaggaaag ccaggcgtgg
      301 cgggccttgc cgcctgcggg ttggatttga attctgcttc cgtgagtccc cccggtgttt
      361 ggtaatacag gttggtgtac atcactgagg ccgtcagctg gcttttttcc gaccgccagt
      421 ggctggtcca gctcacattg tcgcggcgca tggcactttg tatgcggtag ccgtctgcct
      481 ggttgtgcgc ataactgatc cggttgcgtt gctgttcctt tccaaactcc acttgcgcca
      541 aagccgttgc cattccaaac gatcccaggc tcagttccac cgaagcgccg ggcttccagt
      601 taccagccag gctgctcatc agcaccagcc cccctgtgcc ggcaccatac atactgccag
      661 ccggcccccg cagtatttcc agttgccgca tactgttcaa tgccacctgg ttgaagtagg
      721 tattgccccc cgcatctgta aaaggcaggc cattccagta aaacttcaca ttgcgcaccc
      781 caaaaggact tcggagcgaa ctgcctctaa tgttgaggcg gtaactgccg ggagagcgtt
      841 cttccatccg caccccggcc agtgtgttga tggcaggcag caaactggta ctgttaaatg
      901 cttcgagttg gttgaatgca gtggttctga cagcagcact gctgaggttg cggcccaggc
      961 tgccaaaggc acgccccatg atggcaacac tgtcggctcc aaccagtgta tcacctgctg
     1021 attgctgtga ccataactgc aaggggaaaa ataaactaca caagcaccaa acccctattt
     1081 ttaacggatt aaggatattc aacagtttga attctttatg gtaaaagtat tgcctgcatg
     1141 aacaacgcca acaaacttgg acttttcgat ctcaccatca tcgtcatcag cctggtcatc
     1201 gggatgggca tttttaaaac acccgctggc attgccgcta aaagtggtac cgaaactatt
     1261 ttttacagtg cctggctcat tggtggcgcc attgcattga ccggcgcatt ggtgtttgcc
     1321 gaaatcgggg cgaggctgcc cgtggtaggc gcttattaca aagttttttc ctacgcctat
     1381 cacccggctg ttggcttcac catcaatacc atcattctca tcagcaatgc ggcatccctg
     1441 gcggtggtca cactcattgg ggcggagtat tgcagcgact tattgtttgg caaacaaatg
     1501 ggctacttgt tcgacatatc gttttcaatg gtggcggtat caatcttctt cgttgttaac
     1561 ctgctggggc tgaaaacgag cagccgcaca caaaacgtgc tgatgatcgt gaaagtgggc
     1621 ctcattctta tccttatctc cgcccttttt gccgggcagg cgattgaacc tcacggctac
     1681 agcagcgacc ccgttcgcac ctatgatggc agcaatggcc tgttgttgct ggtggtgagc
     1741 atggtggctg tttcgtttac ctatggtggc taccagcaaa ccatcaattt tggcggcgag
     1801 gtcgacaaaa agggaacgct gcaaaaaggc atcatcattg gcatcatcat tgtcatcctg
     1861 ctatacctca ccgtcaacta tgcatacgtg caggtgattg gatacgaaaa aatgaaaaat
     1921 gccaccagca tcggcgctct tttgtttgaa gcatggtttg gaagggtcgg tgccaaagtg
     1981 ttcgactttg ccatgttcat cagtgtgctg gcgtatgtca atatcttgct gatgagcaac
     2041 ccaagggtga tgtatgccat ggccaccgat ggcgtgctgc caaagatctt cagctaccag
     2101 caccccaaaa caaaagcatt ggtgccgggg ctggtcacct tttcagtcat caccgtggcc
     2161 gttacttttt ttggaaaagg ggtgaacaat atcctgggct tttccatttt cctcgacagc
     2221 atgggcttca ttacctgtgc cctggcttta ctcatactgc gcaagcgcca tgtgaatgac
     2281 cacctggtgc aacagggtat gctaacccgt attcaacctg cgcttgccct tttcttcatg
     2341 cttgcctacg ccattgtggc tactgctgtg gctatcgaca attggaaagc agcacttacc
     2401 ggagtagggt tggtggggtt gtttgtggtg gtttattttt tggtcattcg aaagaaatag
     2461 aagcactctc tattgtttgc cggcttttgc atttgatttc ttagcattat tttggcagta
     2521 aatcaaaccc atggctggca cctattccca gatatacctg cagtttgttt ttgcagtgaa
     2581 gggcagaatc tcactgatac caaagcagca taaagaagag ttgcacaggt acatgaccgc
     2641 gctggtacaa aaccggaaag caaagatgtt ggcagtcaat tgcatgccag atcacaccca
     2701 tttgtttgta ggctttaagc cgtcagtatt gattagtgat ttcatcaagg aagtgaaggt
     2761 ggaatcgaat ttgtttgtgc aatcaaaaag atggttgcct ggcaaatttg aagggcagga
     2821 tggatatggc gttttctcat atagtcattc ccaaattgat tcggtgatcc gatatatcct
     2881 cacccaggaa gaacaccatc gcaagcaaac ctttcgcgat gagtatacag cattcctgaa
     2941 ggcatttgat gtgccataca atgagcaata cctgtttgaa tttatcgaga atatctgact
     3001 ggcaaagtgc tgccaaaggc ggctctttca gagccatgta atacgtcagt tcactgttct
     3061 acaaacagga ggccctttca gggctgatgc agccacacca agcagcgcca ataaaatcca
     3121 catggcgcca ttgttatcta tatatttctg ccaagccaac aatttgcgga agctttaaga
     3181 taggtgacct aactaactcg tacacctgtc aactgtctgc aaataacatt tgtgttgcgt
     3241 attgaaagcg ctgaaggcgc gtcctgttta tagtcgtgac ccaggtgctt gagcgcctta
     3301 accctgaagg ggttgccttc
//
LOCUS       DATIQF010000193         3111 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_246226,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000193 DATIQF010000000
VERSION     DATIQF010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3111
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246226"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..835
                     /locus_tag="VLL95_03035"
     CDS             <1..835
                     /locus_tag="VLL95_03035"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSR37864.1"
                     /translation="VPGTVVFLFQPAEEGAPNGEEGGAPLMIKEGAMDNPKLDAVFGL
                     HMAAGAPAGRLSYKSGAHQASSDLFTITVKGKGNHGAMPWGAVDPISVATQIYTGLQT
                     IVSRQSDLTKAPLVITVGSFHAGVRSNIIPETAEMKGTIRSLDANMRLATHEKMKRIA
                     ESIAESAGATAEVKIETQTLVNYNDPALTKRAVPSLVKAAGADNVVESAWTTAAEDFS
                     FYGEKAPTFFFGLGGLPKGKNPAEAGGHHTPDFYLDESGFIMGVKAFCQLVFDYGKGT
                     K"
     gene            878..1294
                     /locus_tag="VLL95_03040"
     CDS             878..1294
                     /locus_tag="VLL95_03040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37865.1"
                     /translation="MSPSVSRVFEKVFLGYYFIYPFYILYLVNNDGGTLHLANPTGWL
                     PSLIFGALIVLYQQFKRGYFIWAKVFLTLLIIYHSLIIFVMHFYIAFSSEEGSFQSND
                     ADSFKAQLVLAYIGIGLSMIVLITGKKWIPAPENED"
     gene            1296..2750
                     /locus_tag="VLL95_03045"
     CDS             1296..2750
                     /locus_tag="VLL95_03045"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase"
                     /protein_id="HSR37866.1"
                     /translation="MKTTFYAIVLCAVAFSACQPTEKKQPPNILFIIADDWSYPYAGV
                     YGDSLLRTPNIDRLAGQGTVFENAYCASPSCTPSRAAILTGMYPHNLGEGVNLVGKLD
                     ASIPTYVQLMRQAGYAVAFERKGWGPGDYRQMGYTQNPCGDSVSFQQLLDTLPLEKPF
                     FFWFGTNDPHRPYDSSAGKNAGIDFNKIKVPGFLPDAPAVREDLADYFSEIEHLDAEV
                     GVLLEQLRKSGRLENTIVVVTADNGMPFPHAKANLYDHGTRVPLIVTSFVGGVEKQRQ
                     AAFVNLIDLAPTFLQWAGVQPPAMDGQSLVALLQGKADAKRDAVFLEKERHCLCRADF
                     DYKAGYPMRAIRTRDFLYIRNLRPDRNPAGDESIPNTPSVFGDVDGGLTKMFVMDHRH
                     EPAVQPFFKWGFEKRPAEELYDVKNDPFNLRNLANDEKMAGTKKQLQQRLQQWMEQTK
                     DPRMNGGGDEIDHYEGTTHAWITRDGIIFWEPKK"
     gene            complement(2784..>3111)
                     /locus_tag="VLL95_03050"
     CDS             complement(2784..>3111)
                     /locus_tag="VLL95_03050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37867.1"
                     /translation="AALVSLVTIGARNRRQSAWRTGGLLAFTGMLGTMAATGFWMLFN
                     EDMEIFAPAQFNSMKSMHELAYHSLLVTSMLYATLQLLRKEKKTLQQAFSKFILRPLS
                     LKKLPC"
BASE COUNT          764 a          756 c          834 g          757 t
ORIGIN      
        1 tgtgccgggt acggtggtgt tcctgttcca gcctgctgaa gaaggtgccc ccaatggaga
       61 agaaggcgga gctccgctca tgatcaaaga aggagccatg gataatccca aactcgatgc
      121 tgtgtttggt ctgcacatgg cggccggagc ccctgcaggc aggttgtctt ataaatcggg
      181 cgcccaccag gcctcttctg atttgtttac cattaccgtg aaaggcaagg gcaaccacgg
      241 cgccatgcca tggggagccg tagatcccat ttcggtggcc acgcagatct acaccgggct
      301 gcaaaccatt gtgagccggc agtctgatct taccaaggca ccattggtga tcacggtagg
      361 ttcttttcat gccggggtgc ggagcaatat cattcctgaa acggccgaaa tgaaaggcac
      421 catccgttcg ctggatgcca acatgcggct ggccacgcat gaaaaaatga aacggatagc
      481 ggagtccatt gcagaaagcg ctggtgccac cgctgaagtg aaaattgaaa cccaaacgct
      541 ggtgaattac aacgatcctg cattgacaaa aagggcagtt ccttccctgg tgaaagcggc
      601 aggtgcggat aatgtggtag aatctgcctg gactaccgcc gcggaagatt tttcttttta
      661 tggcgaaaag gcgccgacct tctttttcgg cctcggcggt ctgcccaagg gcaagaaccc
      721 ggcagaggcc ggcgggcatc acacgcctga tttttacctc gatgaatcag gattcattat
      781 gggcgtgaaa gcgttttgcc agttggtgtt tgattatgga aagggtacaa aatagacagt
      841 agcgcatcgt aattgttatt cattcatgct gcaaacaatg agtccatcgg tttcaagagt
      901 tttcgagaaa gtgtttttgg gttattactt tatttatccc ttttacattt tgtacctggt
      961 caataatgat ggtggcacct tgcatctcgc caatccaaca ggatggctgc catcactgat
     1021 atttggggct ttgatcgttc tctaccagca attcaaaaga ggatacttta tttgggcaaa
     1081 agtgttcttg acattgctta tcatttatca ctctttgata atttttgtga tgcatttcta
     1141 tattgctttt tccagtgaag aggggtcgtt tcaaagtaat gatgcagact cctttaaagc
     1201 ccaacttgtg ctggcctaca tcggcattgg cctcagtatg atcgtgctga tcaccggaaa
     1261 gaaatggatc cctgctcctg aaaatgaaga ctgaaatgaa aactactttt tacgccattg
     1321 tgctgtgtgc tgttgcattc agcgcctgcc agccaacaga aaaaaagcag ccacccaata
     1381 tccttttcat tattgcggat gactggagct atccctatgc cggtgtgtat ggcgacagcc
     1441 tgttgcgtac gcccaatatc gatcggctgg cgggccaggg caccgtgttt gaaaatgcct
     1501 attgtgcttc gccttcgtgc acacccagcc gcgccgctat tctcacaggg atgtacccgc
     1561 acaatttggg tgaaggcgtg aacctggtgg gcaaactgga tgccagcatt cccacgtacg
     1621 tacaattgat gcgccaggcg ggatatgccg tagcttttga aagaaaaggc tggggcccgg
     1681 gtgattaccg gcagatgggg tacacgcaaa atccctgtgg cgattcggtt tcgtttcagc
     1741 agctgctcga taccttgccg ctagagaaac cattcttctt ctggtttggc accaacgatc
     1801 cgcaccggcc ttacgacagc agtgccggca aaaacgcagg cattgatttc aataaaataa
     1861 aagtgcccgg ctttttaccc gatgcgccgg cagtgcggga agacctcgct gattatttct
     1921 ccgagatcga acaccttgat gcagaagtgg gtgtactgct ggagcagttg cgcaaaagtg
     1981 gtcgcctcga aaataccata gtggtggtga cagccgataa cggcatgccc tttccgcatg
     2041 ccaaggccaa cctctacgat catggtaccc gggtgccatt gatcgtaacc agttttgtgg
     2101 gcggggtaga aaaacagcgg caagcggctt ttgtgaacct catcgacctg gcgcctactt
     2161 ttttgcaatg ggccggtgtg cagccacctg ccatggatgg ccagagtctg gtggcactgt
     2221 tgcagggaaa agcagatgcc aaaagggatg cggttttcct ggagaaagaa cgacattgtt
     2281 tgtgtcgggc tgactttgac tacaaagccg gctatcccat gcgggccatt cgcacccgcg
     2341 atttcctgta catccggaac ctgcgacctg atcgcaaccc tgccggtgat gaaagcattc
     2401 cgaacacccc gtcggtattt ggggatgtgg atggcgggct caccaaaatg ttcgtgatgg
     2461 atcaccgcca tgagcctgca gtgcaacctt ttttcaaatg gggatttgaa aaaaggccgg
     2521 ctgaagaatt gtatgatgtg aagaacgatc cgttcaattt gcgcaacctg gcgaatgatg
     2581 aaaaaatggc gggtaccaaa aaacaactgc aacagcgcct gcagcaatgg atggaacaaa
     2641 ccaaagaccc gcgaatgaat ggcggtggcg atgagatcga tcattacgaa ggcactaccc
     2701 atgcctggat cacccgcgat ggcatcatct tctgggagcc gaagaaatga tcttcttctt
     2761 cagagaagta ttggtgattg cattcagcat ggcaactttt tcaaagacaa agggcgcagt
     2821 atgaatttgg agaaggcctg ctgcaaggtt ttcttttctt tccgcaacag ttgcaaggtg
     2881 gcatacagca tggaggtgac cagtagggaa tgataagcca gctcatgcat tgatttcatg
     2941 ctgttgaatt gtgcgggtgc gaagatctcc atgtcttcat tgaacagcat ccaaaagccg
     3001 gtggcggcca tggtgcccag cataccggtg aatgccaata aaccgccggt gcgccatgcg
     3061 ctttgcctgc gattcctggc gccaatggtt accagcgaaa ccagggcagc c
//
LOCUS       DATIQF010000194         5030 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_291759,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000194 DATIQF010000000
VERSION     DATIQF010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5030
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291759"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1235
                     /locus_tag="VLL95_03055"
     CDS             <1..1235
                     /locus_tag="VLL95_03055"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSR37868.1"
                     /translation="FDTEPSVVDNKGDKLLVMTNDGAPNYKLVLIDPLHPEKTNWQTV
                     IPEKPEVLQSVGTGGGQLFATYLKDASTRVYQYNYEGKLAREIVLPGIGTAGGFGGEK
                     KDEEFFYTFTSFTMPATIYRYNIKTGASSIFRKTEVKFDPSQYETKQVFFTSKDGTKV
                     PMFLAYKKGLQLNGKNPVLLYGYGGFNIPLTPAFSVSNLFFMEQGGIYVTVNLRGGSE
                     YGEAWHKAGMLDKKQNVFDDFIAAAEYLVANKYTNKEKIAIRGGSNGGLLVGACMTQR
                     PDLFKVALPAVGVLDMLRYHKFTIGWAWAVEYGSADNADQFPYLYKYSPLHNLKDGVA
                     YPATLITTADHDDRVVPAHSFKFAARLQEAHKGSNPVLIRIESKAGHGAGKPTSKQIE
                     EATDVWSFTMYNLGMTMQ"
     gene            complement(1306..2022)
                     /gene="dapB"
                     /locus_tag="VLL95_03060"
     CDS             complement(1306..2022)
                     /gene="dapB"
                     /locus_tag="VLL95_03060"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR00036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HSR37869.1"
                     /translation="MNICLIGYGKMGKTIEQIAIDRGHNICLVIDKDNLDDLVPSRIK
                     QADVAIEFSNPESAVSNLTKCFEAGVPVVCGTTGWLHEKAHVEKVCHELDGGFIYASN
                     YSLGVNIFFEINKMLARLIGNHPQYDVSITEIHHTAKLDTPSGTAITLAEQVLAAIPN
                     KTSWVNHAPQKPSELEIKSLRIDPAPGTHTVTYSSAVDDIEIKHTAHNRSGFALGAVL
                     AAEFLAGKKGIFTMREVLGL"
     gene            complement(2033..2713)
                     /locus_tag="VLL95_03065"
     CDS             complement(2033..2713)
                     /locus_tag="VLL95_03065"
                     /inference="COORDINATES: protein motif:HMM:NF040144.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5683 domain-containing protein"
                     /protein_id="HSR37870.1"
                     /translation="MELRCNNTGIYFRLVTCLPALLLAGFFLLAHTAVQAQSTDSLAS
                     SKPAVKPVIRDSAYIADSMRQKQIKKATIRSAIIPGWGQVTNKQAWKVPLVYAAIGIP
                     AYLFFYNLEQYKILRDAYIILMDGDPSNDDQIPDNLRPLSPGSIKFYRDQYRRNVDYS
                     ALAFLIGWGLNVVDAAVFANLRDFDVGDNLSMRVSPQVNPFLKTAGVGFVLHASGKSA
                     HKKLLPTN"
     gene            complement(2694..3611)
                     /locus_tag="VLL95_03070"
     CDS             complement(2694..3611)
                     /locus_tag="VLL95_03070"
                     /inference="COORDINATES: protein motif:HMM:TIGR00180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HSR37871.1"
                     /translation="MSKVDQKAMIGKGLRSLLSNIDADLKTKDGHLKEEVVQKTTGII
                     RIPIANIEVNPKQPRRDFDEQALKELAASIKIHDIIQPLTVAKLAGDKYRLIAGERRF
                     RASKMAGLNDVPVYIREGNDQQLLELSLLENLQREDLNAIEISLSYKRLMDELHYTQE
                     EVAERMGKERSTVANYLRLLKLPPDLQVAVRTGVISMGHARALINVDEVEKQLYIFKE
                     VTGKGLSVRQTEELVRSLYKNGRQGVKPPAKPALPPAFKRLEDNLASHFGTKVTLKHA
                     KTGTGSISIEYYSLQELNKILELVGVKVQ"
     gene            complement(3701..4501)
                     /locus_tag="VLL95_03075"
     CDS             complement(3701..4501)
                     /locus_tag="VLL95_03075"
                     /inference="COORDINATES: protein motif:HMM:NF022077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR37872.1"
                     /translation="MARTIGIANQKGGVGKTTTAINLAASLAVLEYRTLLVDADPQAN
                     STTGVGFDLHNINLSLYDCLVNNVPAADVILKTEIPNLDLIPSHIDLVGAEIEMINHP
                     NRENVLKQLLAPIQDRYDLIVIDCSPSLGLITVNALVAADSVVIPVQTEFFALEGLGK
                     LLNTVKIVQNRLNPELEIEGILMTMYDGRLRLCNQVVSEVRRHFENLVFETIIHRKTR
                     LSEAPSAGKPVILYDADSKGASNYLNLAKEVLQKNNMTRISEADRYIE"
     gene            complement(4529..>5030)
                     /locus_tag="VLL95_03080"
     CDS             complement(4529..>5030)
                     /locus_tag="VLL95_03080"
                     /inference="COORDINATES: protein motif:HMM:NF001911.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HSR37873.1"
                     /translation="IAKRNDATIICAFELMDWFHKQGHQKVHPMNTGGKRGFDFGSVK
                     CVVAQHSSVLPDGTYGANPMGFVINTADGDFYYSGDTALTMDMQLVPLWGKIKFAVLP
                     IGDNFTMGAEDAAIAAEWVKTNTVVGVHYDTFGYIVIDKAAAKNTFAARQTNLLLPGI
                     GETIDI"
BASE COUNT         1207 a         1202 c         1261 g         1360 t
ORIGIN      
        1 gatttgatac agaaccatcg gtggtagata acaagggaga caaactgctg gtgatgacaa
       61 atgatggcgc accgaattac aaactggttt taattgatcc gttgcacccg gaaaagacaa
      121 actggcaaac agtgattccg gaaaaaccgg aagtgctgca aagcgtgggc actggtggcg
      181 gtcagttgtt tgcaacctat ctgaaagatg ccagcacaag ggtataccaa tacaattatg
      241 aaggcaagct ggcccgtgaa attgttttgc cgggtattgg taccgccggc ggttttggcg
      301 gtgaaaagaa agacgaagaa ttcttttaca ctttcacctc tttcacaatg cctgctacca
      361 tataccgcta caacataaag acaggagcca gttccatttt caggaaaacg gaagtgaaat
      421 tcgatccttc acaatacgaa acaaaacaag tattctttac cagcaaggat ggcaccaaag
      481 tgcccatgtt cctggcctac aaaaaaggat tgcaattgaa cggaaagaat cctgtgttgc
      541 tctatggtta tgggggcttc aatatcccgt tgacaccagc cttcagcgtg agcaacctgt
      601 ttttcatgga acagggtggc atctatgtaa ccgtaaacct gcggggtgga agtgaatatg
      661 gtgaagcctg gcacaaagca ggcatgcttg ataaaaagca gaatgtattt gacgatttta
      721 ttgcagccgc tgaatacctg gttgctaaca aatacaccaa caaagaaaaa atcgccattc
      781 ggggcggaag caatggagga ttgttggtag gcgcttgtat gacacagcga cctgatcttt
      841 tcaaagtggc cttgccagcc gttggtgtgc tcgacatgct ccgctaccat aagtttacca
      901 ttggctgggc gtgggcggta gaatacggca gtgccgacaa cgcagatcag ttcccgtatt
      961 tgtacaagta ttcaccactg cacaacctga aagatggggt tgcctatcca gctacgctca
     1021 tcaccacagc cgatcatgac gacagggtgg tgcccgcaca cagtttcaag tttgcggcac
     1081 gtctgcagga ggcgcataag ggtagcaacc cggtactgat tcgcattgaa agcaaggcag
     1141 ggcatggcgc cggcaaacca acgagcaagc aaatcgagga agccactgat gtgtggtcat
     1201 tcaccatgta caatttggga atgaccatgc aatgattcaa cggcagataa aaatgaaaag
     1261 aggcgactgc tgcgaacagt tgcctctttt tttatgtgta tcggtttata atcccaatac
     1321 ttcacgcatg gtgaagatgc ccttttttcc tgcgaggaat tcagcggcca gcacagcccc
     1381 aagtgcaaag ccactcctgt tgtgggcggt atgttttatc tcaatatcat ccaccgcaga
     1441 agagtaggtg accgtatgcg tacccggggc cggatcgatc cttaaactct taatttccag
     1501 ttcactgggt ttttgcggcg catgatttac ccaactggtt ttgttgggaa tggccgccag
     1561 cacctgttct gccaatgtaa tggctgtccc gctgggcgtg tccaatttgg cggtatgatg
     1621 gatctccgtg atgctgacat cgtattgcgg gtgattgcca atcagcctgg ccagcatttt
     1681 gttgatctca aaaaatatgt tcaccccaag gctgtagttg ctggcgtata tgaacccacc
     1741 atccagctcg tggcaaactt tttccacgtg tgccttctca tgcagccagc ccgttgtgcc
     1801 gcatactacg ggcacgcctg cttcaaagca tttggtaagg ttgctcactg cgctttccgg
     1861 gtttgaaaac tcaatggcaa catccgcttg ttttatcctg gatggaacca aatcgtccag
     1921 gttgtctttg tctatgacca ggcaaatatt atgaccgcgg tcgatggcaa tttgctcaat
     1981 ggttttaccc atttttccgt atccaatcag gcagatgttc atggtgcaga ttttaattgg
     2041 tgggaagtaa ttttttatgg gcgcttttgc cactggcatg cagaacgaat ccaacgccgg
     2101 cagttttcaa aaacgggttc acctggggag acactcgcat cgacaagtta tcacctacat
     2161 cgaaatcacg caaattggca aaaaccgcgg catctaccac gttcaatccc caaccgatca
     2221 aaaaggcaag ggcgctgtaa tccacgttgc gtcgatactg gtcgcggtaa aacttgatgg
     2281 acccgggcga caatggtctg agattgtcag gaatttggtc gtcgttactc ggatcaccat
     2341 ccataagaat gatgtatgca tccctgagga tcttgtattg ttccaggttg taaaaaaaca
     2401 aataggcggg tatgccaatg gcggcatata ccaacggtac tttccatgcc tgcttgttgg
     2461 taacctgccc ccaaccggga atgatggcag atcggatcgt agcctttttg atttgtttct
     2521 gcctcatgga atcggctata taggcagagt cgcgaatgac tggtttgacg gccggcttac
     2581 tggatgccaa tgaatctgtg gactgtgcct ggactgcagt atgggccaat aagaaaaatc
     2641 ctgccagcaa caaggcaggc aggcaagtta ccagtctgaa atagatgccg gtattattgc
     2701 accttaactc caacgagttc aagaattttg ttgagttcct ggagcgaata gtattcaatg
     2761 ctgatgcttc ctgttcctgt tttagcatgc ttaagtgtca ctttggtgcc aaaatgcgac
     2821 gctaaattat cctctaatct cttgaaggca ggaggcaatg cgggttttgc aggaggttta
     2881 acaccttggc ggccgttttt atacaagctg cgcaccagtt cttctgtctg ccttaccgac
     2941 aggcctttgc ccgttacttc cttaaaaata tagagttgct tttctacctc atctacattg
     3001 atcagcgccc gggcatggcc catgcttatc acgcccgtac gcaccgctac ctgtaaatca
     3061 gggggcagtt tgagcagtcg caggtagttg gcaactgtac tgcgttcttt gcccatgcgt
     3121 tctgctactt cttcctgcgt gtagtgcagt tcgtccatca ggcgcttgta actcagcgaa
     3181 atttcaatgg cgtttagatc ttccctttgc aggttttcga gcagggagag ttcgagcagt
     3241 tgctggtcgt tgccttcgcg gatgtaaaca ggcacatcat tgaggccggc cattttagaa
     3301 gcacgaaaac gacgctcacc tgcaatcagg cggtacttgt cgccggcaag tttggccact
     3361 gtgagcggct gaatgatgtc gtggatcttg atagaagcag cgagttcctt cagcgcctgt
     3421 tcgtcaaaat cgcgacgggg ctgcttgggg tttacttcga tgttggcaat gggaatgcgg
     3481 atgatgccag tggttttttg taccacttct tccttcaggt gtccgtcttt ggttttcagg
     3541 tcggcatcaa tattcgacaa aaggctgcgc aggccttttc caatcatcgc tttctgatct
     3601 actttgctca tgtcgttgtt cacttagtgt agtggccaaa aataacagcg ggcctcgtat
     3661 cctgcaatcg atagaggccc gctgcttctt aaagcctccg ttattcaata tatcggtccg
     3721 cttccgatat gcgggtcatg ttgtttttct gcagtacttc tttggcaaga ttaaggtaat
     3781 tgctggcacc tttgctatcg gcgtcgtata aaattaccgg cttgccggca ctgggtgctt
     3841 cactcaggcg ggttttgcga tggataatcg tttcaaacac aaggttttcg aaatggcgac
     3901 gtacttcgct taccacctgg ttgcaaagcc ggaggcggcc atcgtacatc gtcatcagga
     3961 tgccttcaat ttccagttca gggttcagcc tgttctgaac aatcttgacg gtgttgagaa
     4021 gtttgccaag tccttccagg gcaaagaatt cagtttgcac cggtatcacc actgagtcag
     4081 cagccaccaa tgcattcacc gtgatcagtc cgagggaagg agagcagtcg attacaatga
     4141 gatcgtaacg atcttgtata ggggccagca gctgcttcag tacattctcg cggttggggt
     4201 gattgatcat ttcgatttca gcgcccacca ggtcgatgtg cgaaggaatg agatcaaggt
     4261 tgggtatttc cgtttttaag atcacatctg cggcaggtac attgtttacc aaacaatcgt
     4321 acaaactgag attgatgtta tgtaaatcga agcctacacc tgtggtgctg ttagcctgcg
     4381 gatcggcatc taccagcaat gttctgtatt ccagtacagc caaactggcg gccaggttaa
     4441 tggctgtggt ggtcttgccc actccacctt tttggttggc tattcctatc gttcttgcca
     4501 tcagctcttc gtctcccttt cttttatttt atatgtcaat ggtttcgcct atgccgggca
     4561 gtaacaggtt cgtctgccgg gcagcaaaag tgtttttggc tgcggcttta tcgatcacga
     4621 tgtacccgaa tgtgtcgtaa tgcaccccta ctactgtgtt ggttttcacc cattctgctg
     4681 cgatggcagc atcttcggcg cccatggtga aattatctcc aattgggagc accgcaaatt
     4741 tgatttttcc ccacaggggc accaattgca tgtccatggt gagggcggta tcgccactgt
     4801 agtagaagtc gccatcagct gtattgatca caaaccccat agggttggct ccataagtac
     4861 catcgggcag aacactgctg tgctgcgcca ccacgcactt cacgctgccg aaatcgaaac
     4921 cacgtttgcc tcccgtgttc atggggtgca ctttttggtg accttgtttg tgaaaccagt
     4981 ccatgagttc gaaagcgcag atgatggtgg catcgttgcg cttggctatt
//
LOCUS       DATIQF010000195         1562 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_2930, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000195 DATIQF010000000
VERSION     DATIQF010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1562
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2930"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..739)
                     /locus_tag="VLL95_03085"
     CDS             complement(125..739)
                     /locus_tag="VLL95_03085"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: protein motif:HMM:TIGR00057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HSR37874.1"
                     /translation="MALHLRIHPDNPQQRLIKQVVECLLADGIIIFPTDTVYAIGCSM
                     HSRVGLAHIARIKQSDPAKALLSFVCPDLSDLSKYARQLDTPTFRLLKQHLPGPFTFI
                     LPASREVPKIMQSKKSTIGLRVPDNNIAQAIASTLGHPVLAASVPADQPEDLADPDLI
                     FENFERLVDIVVDGGVGGIVPSTVVDLTGDEPSVIRQGKGEWEE"
     gene            859..>1562
                     /locus_tag="VLL95_03090"
     CDS             859..>1562
                     /locus_tag="VLL95_03090"
                     /inference="COORDINATES: protein motif:HMM:NF025007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin-like domain-containing protein"
                     /protein_id="HSR37875.1"
                     /translation="MQLSPVDVVESISPEDFKRRYYAPMKPVVIRNLSKDWPAYSKWN
                     WDYFKQLVGDKRVALYNNVKSDAYTPINTADDYKTFGEYIDMISQGPAGWRIFLFNIF
                     EHAPQLVQDFSWPDHLMKGFVKKYPMLFVGGASSITHMHFDIDLSHILHTQFAGRKRV
                     LLFPYEEQHKLYRKPFEVLSLADFSNYYDPEKSKLNFEQFPAVKHARGYELILEHGDT
                     LFMPGGYWHHMEYLDSG"
BASE COUNT          378 a          407 c          388 g          389 t
ORIGIN      
        1 aaatcctgat cagaaaagcg aaagcaacaa ttcgctgtac gcatttccat ttcccacttt
       61 cttattcctt atttctcatt ctgtttttcc caatcccaat tcctaaatcc taattccgca
      121 ttcatcattc ctcccattcc cctttcccct gcctgatcac cgaaggttca tcaccggtaa
      181 ggtccaccac tgtggaagga acaatgccgc ccacaccgcc atccactacg atgtctacca
      241 ggcgttcgaa gttttcaaaa atgagatcgg gatcggccag gtcttcgggc tgatcggcgg
      301 gcacggaagc ggccagcacc gggtgcccca gcgtggaagc aatggcctgg gcaatattgt
      361 tgtcgggcac ccgcagtcca atggttgatt ttttgctctg catgatcttg ggcacttctc
      421 ggctggcggg caatatgaaa gtgaaaggtc cgggcaggtg ttgcttcagc agccggaacg
      481 tgggagtgtc cagctggcgg gcatatttgc tcaggtcgct caggtcgggg catacaaaac
      541 tcagcaatgc tttggccgga tcgctttgtt tgattcgggc tatatgcgcc agccccaccc
      601 ggctgtgcat gctgcatcca atggcataca cagtatccgt aggaaaaatg ataatgccat
      661 cggccagcag gcattccacc acttgtttta tgagccgttg ctgggggtta tccggatgaa
      721 ttcgaagatg cagcgccatt gcttgaaagg taagagaaaa gcaaaaacgg gtggtctaaa
      781 gatttgttga ttccgcccgg cagagcggtt aacgatttgt tcatcttact tttgcgccgt
      841 tctaaaaatg tcatcgctat gcagttgtct cctgttgatg ttgtagaaag tatcagcccc
      901 gaagatttta agcgccggta ttatgcgccc atgaaaccgg tggtgatccg caacctgtcg
      961 aaagactggc cggcttacag caaatggaac tgggactatt tcaaacaact ggtgggcgac
     1021 aagcgggtag cattgtacaa caacgtgaag agcgacgcgt atacacccat caatacagcc
     1081 gatgactaca aaacctttgg cgagtacatc gacatgatca gccagggacc tgccggctgg
     1141 cgcatttttc tcttcaacat ttttgagcat gcgccacaac tggtgcagga cttcagctgg
     1201 cccgatcatt tgatgaaggg ctttgtaaaa aaatacccca tgctttttgt gggcggcgct
     1261 tccagcatta cccacatgca tttcgatatc gatctcagcc acattttgca tacacagttt
     1321 gccggccgca agcgggtgtt gctttttcct tacgaagagc agcacaaact ataccgcaag
     1381 ccttttgaag tgctgagcct tgccgatttc agcaactatt acgatccgga aaagagcaag
     1441 ctcaactttg agcagttccc ggcggtgaag catgccagag gatatgaatt gattttggaa
     1501 cacggcgaca ccctgtttat gcccggcggc tactggcacc acatggaata cctcgacagc
     1561 gg
//
LOCUS       DATIQF010000196         2442 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_291789,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000196 DATIQF010000000
VERSION     DATIQF010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2442)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2442
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291789"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1079)
                     /locus_tag="VLL95_03095"
     CDS             complement(<1..1079)
                     /locus_tag="VLL95_03095"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HSR37876.1"
                     /translation="MPKRCLLFFALVSFYVNAFSQNFSLSGNVTDTTEKRNLSQAVVS
                     LLRSKDSVLLKFVRTNANGDFKLPVPAAGKYLLLISYPGYADHADFVDVNSPVDLGRI
                     NMLTKAVVLQNVIVRGSAVRMKGDTLAFVADSFKVKEGATVEDLLRKLPGLSVNNKGE
                     ITAQGQRVEKVLVDGDEFFGDDPTLATRNLQAMAVKEVQVFDKKSEQSTFTGVDDGQT
                     QKTINLKLKDEFKKGYFGKVKLGGGLPSRWENQAMVNAFKDKRKLSVYGIMSNTNNNA
                     LGWTEENQFGGNMNTNMEVGDDGSIMMWSQGDEFGGTGGYYGEGLPTTWSLGTSYGNK
                     WNENRSNVNGAYRYQNLKTEANTYVT"
     gene            complement(1215..>2442)
                     /gene="argS"
                     /locus_tag="VLL95_03100"
     CDS             complement(1215..>2442)
                     /gene="argS"
                     /locus_tag="VLL95_03100"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR00456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HSR37877.1"
                     /translation="LEPAVAEKAGVLAAKLQDASLPAEKVSEIKAELKDIARNATPIM
                     QEVREMLLKWEQGDEEVLSVWRMMNGWVYKGFNETYQRIGSDFTKTYYESETYLLGKE
                     YVEDGLSKAVFFRKDDGSVWIDLTKEGLDEKLVLRKDGTSVYITQDIGLAKKKYEDFP
                     MEQSIYVIGDEQNYHMHVLQLICKHLGMPFADGIHHLSYGMVDLPTGRMKSREGTVVD
                     ADDLCDEMEKVAAEKTEELGKVKDFTSEELEVLYHTLGMGALKFYLLRVDPKKRMVFN
                     PEESIDFHGFNGPFIQYTHARIKSVLRKAGWEPGDGGIPSTVTLHPLEKQVIVLLEQF
                     PDVLQTACSEMNPSHVANYAFSLAKAFNSFYTEHSIANAESEESKLLRLHLSELTATV
                     IANSMNVLGIEVPERM"
BASE COUNT          571 a          659 c          520 g          692 t
ORIGIN      
        1 gttacataag tattggcttc tgttttcagg ttctgataac gataggcacc attcacattg
       61 cttcggtttt cattccattt attgccgtag ctggtgccta aactccaggt ggtgggcaat
      121 ccctcgccat agtatccgcc ggtaccacca aattcatccc cttggctcca catcatgatg
      181 ctgccgtcat cacccacttc catgttggtg ttcatgttgc caccaaactg gttttcttct
      241 gtccaaccga gtgcattgtt gttggtgttg gacatgatgc catacacgct gagctttcgc
      301 ttgtctttaa aggcatttac catggcctgg ttttcccagc gactgggcag gccacccccc
      361 agtttcactt taccgaaata gcccttcttg aattcatctt tcagtttgag gttgatggtc
      421 ttttgggttt gcccatcatc aacaccggtg aatgtggact gctcactttt cttgtcaaac
      481 acctggacct cttttactgc catggcctgc aagttgcgtg tggcaagggt ggggtcgtcg
      541 ccaaaaaact catcgccatc caccagcact ttctctaccc gttgtccttg tgctgttatt
      601 tcgcctttgt tatttaccga taatccgggc aacttcctca ggagatcttc cactgtggcg
      661 ccctctttca ctttgaaact gtcggccaca aaagccagtg tatctccttt catgcgaaca
      721 gcactgcccc gcactattac attctgcaac accactgcct tggtcagcat gttgatcctg
      781 ccgagatcaa cggggctgtt cacgtctaca aaatcggcgt ggtcggcata tcccgggtag
      841 gaaatcaaca gcaggtattt tcctgccgcc ggcaccggca acttgaaatc accattggca
      901 ttggtacgaa caaacttcaa caagacggaa tctttgctgc gcaaaagaga aaccaccgcc
      961 tgcgacagat ttcgcttttc agtagtatca gtcacatttc ctgataatga gaaattctga
     1021 gaaaaagcat tgacatagaa tgaaaccaat gcaaagaaga gcaggcagcg tttcggcata
     1081 caaggtgtgt tagtctgata agaaagttcc tgacagaaaa ctttcattct aaattatccc
     1141 acccgcagca ctgcagctgt taaaaatctg tgacgatttt cggttttgta tgaacggaaa
     1201 aatagccgga ccaattacat gcgctccggc acttcaattc ccagcacatt catgctgttg
     1261 gcaatgacgg tggcggtgag ttcgctcaaa tgcaatcgca acaatttgct ctcttcgctt
     1321 tccgcattgg caatggaatg ctccgtatag aacgagttga atgctttcgc cagcgagaaa
     1381 gcataattgg ctacatggct cggattcatt tcgctgcagg cggtttgcaa tacatcgggg
     1441 aactgttcca gcaatacgat cacctgcttt tccaggggat gcagggttac cgtggaagga
     1501 atgcccccat cgcccggctc ccagccagct ttacgcagta ccgacttgat gcgtgcatgg
     1561 gtatattgaa tgaatggccc gttgaaccca tgaaaatcga tggactcttc gggattaaaa
     1621 accattctct ttttgggatc caccctgagc aggtaaaact tgagagcgcc catgcccaaa
     1681 gtgtggtaaa gcacttccaa ctcttcgctg gtaaaatctt tcaccttacc gagttcttcg
     1741 gttttctcgg ccgccacttt ttccatttca tcacacaggt catctgcatc cactacggtt
     1801 ccttcgcggc tcttcatccg tcctgtcggc agatcaacca tgccataact caggtgatga
     1861 atgccatcgg caaaaggcat gcccaggtgc ttgcatatca gctgcaatac atgcatgtgg
     1921 tagttctgct cgtcacctat cacataaatg ctttgctcca tgggaaaatc ttcgtacttc
     1981 tttttggcca ggccaatgtc ctgcgtgatg tacacagaag taccatcctt gcgcagcacc
     2041 agcttttcat caaggccttc tttggtcaga tcaatccaga cactgccatc atcctttctg
     2101 aaaaaaacag ctttcgacaa accatcttcc acgtattctt tacccagcag gtaggtttca
     2161 ctttcgtagt aggttttggt aaaatcgctg ccgatgcgtt ggtaggtttc attgaatcct
     2221 ttgtacaccc atccgttcat catgcgccac acagacaata cctcttcatc gccctgttcc
     2281 catttcaaca gcatttcacg cacttcctgc atgatgggtg tggcattacg ggctatgtct
     2341 ttcagctcag cctttatttc agatactttt tcagcaggca atgatgcatc ctgcaatttg
     2401 gctgccagca caccagcctt ttctgcaaca gccggctcga gg
//
LOCUS       DATIQF010000197         2304 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_261496,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000197 DATIQF010000000
VERSION     DATIQF010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2304
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261496"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..583
                     /locus_tag="VLL95_03105"
     CDS             <1..583
                     /locus_tag="VLL95_03105"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR37878.1"
                     /translation="ALFCYWQNSSKSIAQSVWHTSPQADPALYEKAVSWTGLVNGWYN
                     IVTFLSAFGLVWFAKRFSPKAVHFSCLVLAGLGFLIFPHIENKYLLFPAITGFGIGWA
                     SMMGIPYLMVVSNIPKERYGVYMGIVNMMIVIPMILQNITFGYVLKNFLGNDPGKAIT
                     LAGTFLLIAAGATLLMKPKKPAGEIVLTGGGGH"
     gene            597..>2304
                     /locus_tag="VLL95_03110"
     CDS             597..>2304
                     /locus_tag="VLL95_03110"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HSR37879.1"
                     /translation="MRKLLLALNALGWLTACQPGEQQPSATVSNNNEWWEEAVVYQLY
                     PRSFKDSDGDGVGDLKGIIEKLDYLKSLGVDAVWLNPIYTSPNADNGYDVSDYRGIQP
                     EYGSMADFDALLKGLHERGIKLVMDVVVNHSSDEHEWFKQSRSSRDNPYRDYYHWWPA
                     EKARLNDSVGQGKPPFRYSLFDINHDAWKYDSLTNAYYLHYFATKQPDLNWENPKLRK
                     EVYDMMKFWADKGVDGFRLDAFQFAAKDTTWPELPAGYEKEFAKHVAMKPQLHDNLQE
                     MYKEVFSQYNVMTVAEGAGNSFEDAHQLVDADRKELNMAYAFEAVDLAKSSGYDFVNF
                     KKVFTKWDSAFADKGWLSIFLANHDNARMLSRWVKATPEQQPVAAKMLNTFLLSMRGT
                     PYCYYGDELGMSNPGFTKLEEYRDGPALNDYAYRIKNGAKPAEVLAEMSFSCRDNGRT
                     PMQWSNAPHAGFTTGTPWIAVNPNYNGLNVEAQEKDENSSLHYFRKMIALRKEHKALV
                     HGKYVLLDATNPQVYAYTREWEGKKYLVLLNFSNAPASVNTGISLTNSKLLISNYEKG
                     ETG"
BASE COUNT          620 a          503 c          633 g          548 t
ORIGIN      
        1 tgccttgttt tgctactggc aaaacagcag caagagcatt gcgcaatcag tatggcatac
       61 ttcaccgcag gctgatcctg ccttgtacga aaaggcggtg agctggacag ggctggtgaa
      121 tggctggtac aatatcgtca ccttccttag tgctttcggt ttggtgtggt ttgccaaacg
      181 tttttcaccc aaagcagtgc acttcagttg tttggtgctg gcgggtttgg gctttctcat
      241 tttcccgcac atcgaaaaca aatacctgct gtttcctgcc atcaccggtt ttggtattgg
      301 ctgggccagc atgatgggca ttccttacct gatggtggtg agcaatattc cgaaagaacg
      361 ttacggtgtt tacatgggta ttgtgaacat gatgatcgtg ataccgatga tcctgcaaaa
      421 catcacgttt ggctacgtac tgaaaaactt cttgggaaat gatccgggca aagccatcac
      481 gctggccggt actttcctgc tgatagcggc cggagccaca ttgctgatga aacctaagaa
      541 accagcaggt gaaattgtgt tgacaggcgg tgggggtcac taaataaaat gcgttgatga
      601 gaaaattgtt attagcactt aatgctttgg gatggttgac tgcttgtcaa cctggcgagc
      661 aacagccgtc tgcaactgtt tccaacaata atgagtggtg ggaagaagcg gtggtgtacc
      721 aattgtatcc ccgcagtttt aaagacagtg atggcgatgg cgttggcgac ctgaaaggca
      781 tcattgaaaa actcgactac ttgaagagcc tgggagtgga tgctgtttgg ttgaacccga
      841 tctatacatc gccgaatgct gacaacgggt atgatgtaag cgactaccgc ggcatacaac
      901 cggagtacgg cagcatggcg gattttgatg ccttgctgaa gggcttgcac gaacgaggca
      961 tcaaactggt gatggatgtg gtggtgaatc acagcagcga cgaacatgag tggtttaagc
     1021 aaagccggag ttcacgtgac aacccctatc gcgactacta ccactggtgg ccggctgaaa
     1081 aagcccgcct gaacgactca gtcgggcagg gcaagccgcc ttttcgatac agtttgttcg
     1141 acatcaatca cgatgcctgg aaatatgatt cgcttaccaa tgcttactac ctgcactatt
     1201 ttgccacgaa gcaacctgat ttgaattggg aaaatccaaa actccggaaa gaagtgtatg
     1261 acatgatgaa gttttgggcc gacaaaggcg tggatggttt caggctcgat gcgtttcagt
     1321 ttgctgccaa agacacaaca tggccggagc tgccagccgg gtatgagaaa gagtttgcga
     1381 aacacgtggc catgaaacca caactgcacg acaatttgca ggagatgtac aaagaagtgt
     1441 tcagccaata caatgtgatg acggtagctg aaggggccgg caatagtttt gaagatgcac
     1501 accaactggt ggacgcagat cgaaaggagc tgaacatggc gtatgctttt gaagcggtgg
     1561 atcttgccaa aagcagcggc tacgattttg tcaatttcaa aaaagtattt accaaatggg
     1621 acagcgcttt tgccgacaag ggctggttgt cgattttcct ggccaaccac gataatgcac
     1681 gaatgctgag ccggtgggtg aaagccacac ctgagcaaca acctgtggcc gccaaaatgc
     1741 tcaacacttt tttgctgagc atgcgtggca ctccgtattg ttattatggc gatgaattgg
     1801 gcatgagcaa tcctggcttt acaaagctgg aagaataccg tgacgggccc gcactgaatg
     1861 attatgccta ccgcattaag aacggggcga agccggcaga ggtactggct gaaatgagtt
     1921 tcagttgtcg cgacaacggg cgtacaccca tgcagtggag caatgcgccc catgcaggat
     1981 ttaccaccgg tacaccctgg atagctgtga atcccaacta caacggattg aatgtggaag
     2041 cacaggaaaa ggatgagaac agcagcctgc attacttcag gaagatgatt gcgctgcgga
     2101 aagagcacaa agcgctggtg catggaaaat atgtcttgct ggatgcaacc aatccgcagg
     2161 tatatgctta cacccgcgag tgggaaggaa agaagtacct ggtgttgttg aatttttcca
     2221 atgcaccggc ttcggtgaat acggggatat cattgaccaa ttcgaaattg ctgatcagta
     2281 attatgaaaa gggagagaca ggca
//
LOCUS       DATIQF010000198        10378 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_200707,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000198 DATIQF010000000
VERSION     DATIQF010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 10378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10378)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10378
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200707"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1923
                     /locus_tag="VLL95_03115"
     CDS             <1..1923
                     /locus_tag="VLL95_03115"
                     /inference="COORDINATES: protein motif:HMM:TIGR00691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0015968 - stringent response [Evidence
                     IEA];
                     GO_process: GO:0015969 - guanosine tetraphosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RelA/SpoT family protein"
                     /protein_id="HSR37880.1"
                     /translation="FGNEIARIVDGLTKISNVIDTSSSQQAENFKKILLTLTDDPRVI
                     LIKLADRLHNMRTLDSMKREKQLKIASETVWVYAPLAHRMGLYAIKTEMEDLSMKYME
                     PDAYRDIAQKLAETKRERSRYINEFIRPLRDKLDQTGINFDIYGRPKSIHSIWNKIKK
                     KGVSFEDVYDLFAIQVIIDSEPQDEKADCWKVYSIITEEYQPQPERLRDWLSRPKSNG
                     YEALHTTVMGPQGRWVEVQIRSKRMDEIAERGLAAHYKYKEGGQVEDRFDKWFQQIRD
                     VISSQDADTVDFLNDFKTSFLAEEIYVYTPKGDVKMLPAGSSALDFAFAIHTAVGSKT
                     IGAKVNHKLVPISHKLRSGDQIEIITSNKQKPTEDWLNHVITAKAKSRIKDALKEEKR
                     KVAEDGKYVLQKKLEGMKAANSHGNIELVMTFYKLSSSLDLFYNIAIKNIDLKELKDF
                     TVHGDRLELPKPVKAAIESHKHDIHDLNRQPVPSKDTELIIFGQSGDQFKYTLANCCK
                     PIPGDDVFGFLTATEGLKIHRTSCPNAARLLANYSHRVVKTKWAKNKDIAFLTGVRII
                     GLDDVGVINKITNVISGDMRININALTIESHDGLFEGNIKVYVHDKEELDELVIRLKH
                     LKGIESVDRFEPEEAK"
     gene            2085..4664
                     /locus_tag="VLL95_03120"
     CDS             2085..4664
                     /locus_tag="VLL95_03120"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: protein motif:HMM:NF012532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HSR37881.1"
                     /translation="MDPNSLSQLERFKNEVGIKFQLFNSLFTSLPFHRIEKTGILLSL
                     LLHNCEEGYDKGSSPLEIVNDFFAKNPSYKTEEDRIDLLYRFVQYAERQVVLFDALED
                     AAFRDLNDFNGTGTLKHLQTQVEQKRRQSVLDELLGHFAVRLVLTAHPTQFYPGEVLG
                     IINDLSKALNEDNTAQVNMYLQQLGKTPFLKKEKPTPHDEAVSLIWYLENVFYPAAGR
                     ILFFMKRQFNYAFDGKNPVITLGFWPGGDRDGNPFVTTDTTLKVADDLRGSILKCYYL
                     EVRRIKRRLTFKGVTQPLAALEKALYDNVFLPGHRSMLTKEDILRPLKVVRQTLKTDH
                     NSLFIHLVENLINKVEVFGLHFASLDLRQDSSVHTQLWEALEQKGGVLPDGYKSLSAA
                     EKMQALTQVQPLAHGEIFSNPLHRDAWQVAKAMADIQAFNGEAGCHRYIISHCENALN
                     VLEVYGIFLLAGWQPGKLTADIVPLFETIDDLQHAASIMEALYNQPSYRAHLAQRGNQ
                     QTIMLGFSDGTKDGGYLMANWSIYKAKEELTLLSRKYDIEVVFFDGRGGPPSRGGGKS
                     HKFYASMGQNISNREIQLTIQGQTISSNFGTIDAAQFNIEQLINAGISNTLFSSRLTT
                     LEKAEESLLMDLAEEGFKAYAHLKNHPNFLDYLSSASPLRFYADTNIGSRPAKRGKSA
                     KLSLNDLRAIPFVGAWSQIKQNVTGYYGVGTALKNMQEQGRWQEVVDLYQHSVFFRTL
                     IDNCEMAMMKCFFPLTAYLGNHAVYGKVWHMIHDEYLLTRKMILQLSGYQELMGNYPV
                     EQLSIRMRERIVLPLTTIQQYGLAHLRKMEEQVLETPLKEKYEKLVMRCSFGIINAGR
                     NSA"
     gene            4831..6552
                     /locus_tag="VLL95_03125"
     CDS             4831..6552
                     /locus_tag="VLL95_03125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37882.1"
                     /translation="MKTTLLCLLVLVFLEPAKAQWSTDPTLNTPVQTSAEDDLNDLMV
                     ADGSGGAFVFYKLSNTDPQTQRNNDVLYVKRLKADGTLAWGTQSSGTLICNAGNDRYF
                     YGAVLDGAGGVIVVWVDYRDIDAGDVYIQRFSSSGTALWGTNGKAVTTTTPTEEYDAY
                     IVSDGSGGAIVAWSWDNTSSDIQASAQRFDANGNAMWAPGGVRLINNTGFRFMASMVS
                     DGSGGAIAVMVDYRKDPAGNNYNLFDPVTSALDSDIFAQRIDGSGNLLWGAGGAIVCN
                     EAKNQGDIYRGSNARALEDGSGGVVVFFADYRNDALGMDGFPMWDNDDVYAQRLNNSG
                     VRQWASAGVSVTNLDRHQYSISAVRTSGGNYAVAYYDETPSVNKVVGQLLSSTGTKLW
                     ATPVNVVGNSKVSSMRLMNDLAGNVISIYINDLQDSNPPSVRAQKFNTAGATQWTASG
                     LAIASNASSFPVFPRVVNSESETLVVTWRDFRSTATKADIYGAKVAPSGSLTTWAGGP
                     IISAANGNWNNSATWQSGIMPVSTSEVIIRHTVTVTATTTARKVTVENPNGNLRMNPG
                     ISVTVSQ"
     gene            complement(6585..8264)
                     /locus_tag="VLL95_03130"
     CDS             complement(6585..8264)
                     /locus_tag="VLL95_03130"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HSR37883.1"
                     /translation="MNRTYAPLWIFIAAVLITGMFFPKLMDTDAPEYASIAMHMEQQD
                     QWGTIINRTYTDGQPYDYLDKPHVLYWSAWPGFKLFGITDGGYRLGSIIMSLLAALAT
                     LRLGALLYNKRVGQMAAFMFLSAQAIILANHDVRTDSLLTSFVVLAVWQLVLYVEKDK
                     WINLVWAGAFLAGGVGTKGMIAILVAGSVLFFYLLGRKGWKHLLSWKWLLLVGSFFLF
                     LSPVLYLYYVQFDLHPEKFVNGSYGTSGIKFILWTQSFERFAGDRQFVDNPEFSFFFH
                     TLLWALLPWSLICYGGVVNRLKNLLATKGSSFFSKEQLTFAGVWAMFLLMSKSSFKLP
                     HYLNVLFPFMCIFTAGYLFELFKSGNTKSLRLYRGLQWVVIGALGVLLVVINGWAFPV
                     KEWWVILLFLALSAVAVWYFRSATFDLLDRVWVPSAVTILLVNVLLNTHFYPQVDQYQ
                     AGSSIAQETRKQGIPVDDIYLYRSLYRSFDFYLQAWRPMLNEEQIIEKQKAGKPIYLF
                     TNEEGLQKLKTRFRFEIVIQTPDFHITGLNGKFLNPSTRAQSYQYAYLVKL"
     gene            8384..9325
                     /locus_tag="VLL95_03135"
     CDS             8384..9325
                     /locus_tag="VLL95_03135"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSR37884.1"
                     /translation="MRAPVLAIVLPCYNEEAILSETIARLTAMMNGYMEEGVIAPGSF
                     LLFVDDGSRDRTLSILREHKSSMVRSLKLSANCGHQSALLAGMHYVTGKVDCMISMDA
                     DLQDDISVTSQMLEAYNRGAQIVYGVRQSRGADTWFKKQTALAFYKLMQRMGVNLVYN
                     HADFRLLSNKVLTEFGRYREVNLFLRGIFPKMGFTSATVYYDRQDRTAGETKYPLRKM
                     LNLAMNGITSFSNVPLKIISYIGFLVFLGSVLASLWVVFVILTGRNAPGWASITLPIY
                     FLGGVQLLALGILGEYISRIYLETKQRPVYHIEEVIE"
     gene            9414..>10378
                     /locus_tag="VLL95_03140"
     CDS             9414..>10378
                     /locus_tag="VLL95_03140"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: protein motif:HMM:NF002223.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HSR37885.1"
                     /translation="MIDVILGLQWGDEGKGKIVDFFAPNYDIIARFQGGSNAGHTLYV
                     NGQKIVLHQIPSGVFHDHTINLIGNGVVLDAVTLKRECEAVAKFGADVRKNMFISKRT
                     HLILPTHRALDKASELQKGEGKIGSTLKGIGPAYMDKTGRNGLRVGDLLDKSFTTNYI
                     KLRLKHQRLLDNHNFNEDISAWEEEFFEAVEFLRSLNIVDGEYFLNEKIREGKKVLAE
                     GAQGSMLDIDFGTFPFVTSSNTITAGVMSGLGVAPQKVRDVIGITKAYCTRVGGGPFP
                     TELHDETGEELRKAGNEFGATTGRPRRCGWIDLVALNYACMINGVT"
BASE COUNT         2777 a         2507 c         2664 g         2430 t
ORIGIN      
        1 tttggaaatg aaatagcccg cattgtagac ggacttacca aaatcagcaa cgtaatagac
       61 accagcagca gccagcaggc cgagaatttc aagaagatat tgctgaccct taccgatgat
      121 cccagggtaa tcctgatcaa actggccgac cgcctgcaca acatgcgaac cctcgacagc
      181 atgaagcggg aaaagcagtt gaaaatagcc agcgaaacgg tatgggtata cgctcccctg
      241 gcgcaccgca tgggcttgta tgccatcaaa acggagatgg aagacctttc catgaagtac
      301 atggagcccg atgcctaccg cgacattgcg caaaagctgg cagaaaccaa gagggagcgc
      361 agccgctaca tcaatgaatt catcaggccg ctgcgggata agctggatca gacaggcatc
      421 aatttcgata tttatggccg ccccaaaagc atccactcca tctggaataa gatcaagaag
      481 aaaggagtga gcttcgaaga tgtgtacgat ctctttgcca tccaggtgat catcgattcg
      541 gaaccacagg atgaaaaggc cgattgctgg aaagtttaca gcatcattac cgaggagtac
      601 cagccccagc ccgaacggct tcgcgactgg ctgagccgac ccaagagcaa tggctacgaa
      661 gccttgcaca ccaccgtgat gggcccccag ggccggtggg tggaagtgca gattcgttcg
      721 aagcggatgg acgagattgc tgaacgtggt ttggcggcgc actacaaata caaagaaggc
      781 ggacaggtgg aagaccgctt tgacaaatgg tttcagcaaa tacgcgatgt catcagttcg
      841 caggacgccg atacggttga cttcctcaat gatttcaaaa cgagtttcct ggcggaagaa
      901 atttatgtgt acacgcccaa aggcgatgta aaaatgctgc cggcaggaag cagtgccctt
      961 gattttgctt ttgccatcca cacagcggtg ggaagtaaaa ccattggtgc caaagtcaac
     1021 cacaaactgg tgcccatcag ccacaaactg cgcagtggcg accagattga gatcattacc
     1081 agcaacaagc aaaagcccac tgaagactgg ttgaaccacg taataaccgc caaagccaaa
     1141 agccgcataa aagatgcgct gaaagaagaa aagcgcaaag tggctgaaga tggaaaatac
     1201 gtgctgcaga aaaagctgga aggcatgaag gccgccaaca gccatggcaa tatagaactg
     1261 gtgatgacct tttacaaatt gtcgtcatcg ctggatttgt tctacaacat tgccatcaag
     1321 aatattgatt taaaagagct caaagacttt acggtacatg gcgacaggct tgaactgccc
     1381 aagccggtga aagcagccat cgaatcgcac aagcacgata ttcacgacct gaacaggcaa
     1441 cctgttccca gtaaggatac cgagttgatc atcttcgggc aaagcggcga ccagttcaag
     1501 tacaccctgg ccaactgctg caagcccatt cccggcgatg atgtgttcgg atttcttacg
     1561 gctaccgaag ggctaaagat ccatcgcact tcctgcccca acgcagcccg cctgctggcc
     1621 aattacagcc acagggtggt aaagacaaaa tgggccaaga acaaagacat cgccttcctt
     1681 accggtgttc gcatcattgg gctcgatgat gtaggcgtga tcaacaagat caccaacgtg
     1741 atcagtggcg acatgcgcat caacatcaac gcacttacga ttgaaagcca tgatgggttg
     1801 tttgagggca acatcaaagt gtatgtacac gacaaggaag agttggatga actggtgata
     1861 cgtctcaagc atctcaaagg cattgaatca gtcgaccgct ttgagccgga ggaagccaaa
     1921 taatcgtatc tattcaatgt tgatggtggc agtttccgca tcgtaactgc gcacaattgc
     1981 ttgctgcttc ctgttgcatt agccgctcat tactccaatt tccttagttt agcgtgctgc
     2041 ctggtgacat ttcgattgcg agccgtggaa tcattacatc aaatatggac ccaaattcgc
     2101 ttagccaact tgagcgcttc aaaaacgaag taggcatcaa gtttcagttg ttcaacagcc
     2161 tgttcaccag cctgcctttt catcgtattg aaaaaaccgg gatccttttg tcgttgcttc
     2221 ttcacaactg tgaagaaggg tatgacaagg gttccagtcc gctggaaata gtcaatgatt
     2281 tttttgccaa gaatccttcc tacaaaacgg aggaagaccg cattgacctg ctttatcgtt
     2341 ttgttcagta cgccgaacgc caggtagtgc tgttcgatgc actggaagac gcggcctttc
     2401 gcgacctcaa tgatttcaat ggaacaggca cgctgaaaca cctgcaaaca caggtggagc
     2461 agaaaaggcg gcagtcggtg ctggatgagt tgttggggca ttttgctgtg aggctggtgc
     2521 taacggcaca ccctacccag ttttatccgg gtgaagtgct gggtattatc aacgatctgt
     2581 ccaaggcttt gaatgaggac aataccgccc aggtaaacat gtacctgcag cagttgggaa
     2641 agaccccttt cctgaagaag gaaaaaccaa cgccacatga cgaagccgtc agtctgatat
     2701 ggtatttgga aaatgtattc tacccggcag cggggcgtat cctgtttttc atgaagcggc
     2761 agttcaacta tgcgtttgat ggcaagaacc cggtgatcac acttggtttc tggcccggtg
     2821 gcgacaggga tgggaatcct tttgttacca ctgacaccac gttgaaagtg gccgatgacc
     2881 tgcggggaag cattttgaaa tgttattacc tcgaggtgcg tcgcataaag cgcaggctga
     2941 cattcaaagg cgttacacag cctttggcgg cccttgaaaa agccctgtac gacaatgtgt
     3001 ttttgccggg acatcgctcc atgcttacca aggaggacat tctgcggcca ctgaaagtgg
     3061 tgcggcaaac attgaagacg gatcacaaca gtttgtttat acacctggtc gaaaacctga
     3121 tcaacaaggt tgaagtgttt ggattgcatt tcgcctcgct ggatctgcgc caggacagtt
     3181 cggtgcatac ccagctttgg gaggcactcg agcaaaaagg cggtgtgctg cccgatgggt
     3241 acaaatcgct ttcagcggct gagaagatgc aggctcttac gcaagtgcaa ccactggcgc
     3301 atggcgaaat cttttccaac ccgttgcacc gcgatgcctg gcaggtggcc aaagcgatgg
     3361 ccgatatcca ggctttcaat ggtgaagccg ggtgtcaccg ttacatcatc agccattgtg
     3421 aaaatgcctt gaatgtgctg gaagtatatg gcatcttctt gcttgctggc tggcagcctg
     3481 gtaaattgac ggcagatata gtaccgctgt ttgaaaccat tgacgacctg cagcatgcag
     3541 catccattat ggaagcgttg tacaaccagc cttcctatag ggcgcacctg gcacagcgtg
     3601 gcaaccagca aaccattatg ctgggtttta gtgatggcac caaggatggc ggctatctca
     3661 tggccaattg gagcatttac aaggccaagg aagaacttac cttgctgagt cgcaaatacg
     3721 acattgaggt ggtgttcttt gatggtcgtg gcggaccacc cagccgcggt ggcggcaaga
     3781 gccacaagtt ttacgccagc atgggacaga acatttcgaa ccgcgaaata caactcacca
     3841 ttcagggcca aaccatcagt tccaatttcg gcaccattga tgcggcgcaa ttcaacatcg
     3901 aacaactcat caatgccggc atcagcaata cgctgttttc atcaaggctt accaccctgg
     3961 agaaagcgga agaatcattg ctgatggacc tggcggagga aggcttcaag gcctatgccc
     4021 acctcaagaa tcaccccaat ttcctggact acctgagcag cgccagcccg cttcgctttt
     4081 acgcggacac caacatcggc agccgccctg ccaaaagggg caaatcggca aagctttcgc
     4141 tcaatgactt gagggcgatt ccgtttgtgg gtgcctggag ccagatcaag cagaacgtga
     4201 ccgggtatta tggcgtgggt acggcactta agaacatgca ggagcaaggc cgctggcagg
     4261 aagtagtgga tttgtaccag cattctgtgt tcttcagaac gcttatcgac aattgtgaaa
     4321 tggccatgat gaaatgcttc tttccgctga cggcttacct gggcaaccat gcggtgtatg
     4381 gcaaggtgtg gcacatgata catgatgaat atttgctgac gcggaaaatg atactacagt
     4441 tgagcggtta ccaggagttg atgggtaatt acccggtgga gcagttaagc atccgcatgc
     4501 gtgaacgcat tgtgctaccg ctcaccacca ttcagcaata tggcctggca caccttcgca
     4561 aaatggaaga acaggtgctc gaaacgccat tgaaagagaa atacgaaaag ttggtgatgc
     4621 gttgctcatt tggcattatc aatgccggaa gaaattccgc ctgactgctt tgcatcaaaa
     4681 aagtccccca aaaaccaacc tgatccccca tggcaggttg gtttttctat tccaaattgg
     4741 ctgacaccga catgaaaaaa ttttctctgt gtattgtatc ttcattgaac gtcaatacgt
     4801 aataccccaa cttacccaaa ctttcgggtt atgaaaacaa cacttctttg tttgcttgta
     4861 cttgtttttc ttgagccagc aaaagcgcaa tggagtaccg accctacgct caacactccg
     4921 gtgcagacca gtgctgaaga tgatctcaac gaccttatgg tggctgatgg gagtggtggc
     4981 gcattcgttt tttacaaatt atcgaacaca gatcctcaaa cccagcgcaa taacgatgtt
     5041 ttgtatgtaa aaaggctgaa ggcagatggc accctggcct ggggaaccca atcatcgggt
     5101 acattgatat gcaatgctgg taacgaccga tatttttatg gtgctgtatt agatggtgcg
     5161 ggaggtgtga ttgtggtatg ggtggattac agggatattg atgcgggtga tgtatacatc
     5221 caacgcttca gcagcagcgg tactgcctta tggggaacca atggcaaggc cgttaccact
     5281 acaacgccaa ccgaggagta tgatgcttat attgtttctg atgggtcagg tggtgctatc
     5341 gtggcatgga gttgggacaa taccagttct gacatacagg ccagcgcaca acgctttgat
     5401 gccaatggca atgccatgtg ggcgcccggt ggggtcaggc tcatcaataa tacaggattc
     5461 cgatttatgg cttccatggt aagcgacggc tccggtggtg ccattgcagt gatggtagat
     5521 taccgaaaag accctgcggg caacaattac aatttgtttg atccggttac ttctgcgctt
     5581 gactcggaca tttttgcaca gcgaattgat ggcagtggca atctgctttg gggagcaggt
     5641 ggtgcgatag tatgcaacga ggccaagaac cagggtgata tttacagagg aagcaatgcc
     5701 cgtgcattgg aagatggctc cggaggtgtg gtcgtgtttt ttgccgacta caggaatgat
     5761 gcattgggaa tggatggttt tcccatgtgg gacaatgatg atgtatacgc ccaacgactg
     5821 aacaactctg gcgtgcgcca atgggcttct gccggtgtaa gtgttaccaa cctcgaccgg
     5881 catcaatact ctatctccgc tgtacgaacc agtgggggca actacgcggt agcctattac
     5941 gacgaaacac cctccgttaa taaggtagta gggcaactgt taagcagcac cggcactaaa
     6001 ctgtgggcta ctccagtaaa tgttgtgggc aacagcaagg tgtcgagcat gcgtttgatg
     6061 aacgatttgg ctggtaatgt gatttctatt tacatcaacg atttgcagga tagtaatccg
     6121 cccagtgttc gggcgcaaaa attcaacacg gctggagcta cacaatggac ggcgtcagga
     6181 ctcgccattg ccagcaatgc atccagtttc cctgtgttcc cccgggtcgt aaactccgaa
     6241 agcgaaacgc tggtggtgac atggcgcgac ttccgtagca cggctaccaa agccgatatt
     6301 tatggcgcca aggtggcgcc cagcggaagc ctcaccacct gggcaggcgg ccccatcatt
     6361 tcagcagcca atggcaactg gaacaacagc gctacctggc aaagtgggat catgcccgtt
     6421 tctacttcag aagtcatcat caggcataca gttaccgtta ccgctaccac caccgcccgt
     6481 aaggtaaccg ttgagaatcc gaatggcaac ctgaggatga accccggcat aagtgtaacg
     6541 gtttcgcagt agtggcctcc tcgcttttta ccggtaatgc ttccttacaa ctttaccagg
     6601 taggcgtatt gatagctttg agctctcgtg gaggggttga ggaattttcc attgaggcca
     6661 gtgatatgaa aatccggagt ttgaatgaca atttcaaaac ggaaccgggt cttcagtttt
     6721 tgtagtcctt cttcattggt aaacaggtaa atgggtttgc ctgctttttg tttttcaatg
     6781 atttgttctt cgttcagcat gggccgccat gcttgcagat aaaagtcaaa ggaccggtat
     6841 aaactgcggt acaggtaaat gtcatccacc ggtatgcctt gctttctggt ttcctgtgca
     6901 atgctgctgc ctgcctggta ttgatctacc tgcgggtaaa aatgggtatt cagcagcaca
     6961 ttgaccagca ggatggttac tgcggaaggc acccaaaccc tgtcgagcag gtcgaaggtg
     7021 gctgagcgga aataccaaac agccacagcg ctgagcgcaa ggaagagcag gatcacccac
     7081 cattctttta caggaaaagc ccagccattg atgaccacca gcagcacacc gagggcgcca
     7141 atcaccaccc attgcaagcc gcggtacaac ctcaggcttt tggtgttgcc gcttttgaaa
     7201 agttcaaaca aatagcctgc cgtaaaaatg cacatgaaag gaaaaagaac attgaggtaa
     7261 tggggcagct tgaaacttga tttgctcatc agcaaaaaca tggcccaaac gcctgcaaaa
     7321 gtcaattgct ctttcgaaaa gaaactgctg cctttggtag cgagtaaatt cttcaatcgg
     7381 ttcactacgc cgccgtagca aatgaggctc cagggcagca aggcccacag cagggtatga
     7441 aagaaaaaac tgaattccgg gttgtcaaca aactgcctgt cgccggcaaa gcgttcaaaa
     7501 ctctgcgtcc acaaaatgaa tttgataccc gaagtgccat aactgccatt cacaaacttt
     7561 tccggatgca ggtcgaattg tacatagtac aaatacaaca ccggcgacaa gaacaggaaa
     7621 aaggatccaa ccagcagcaa ccacttccag ctcagcagat gcttccagcc ttttcttccc
     7681 agcaggtaga agaacaacac agatcctgcc accaaaatgg cgatcatacc tttggtaccc
     7741 acgccaccag ccagaaaggc gcctgcccat accaggttga tccatttgtc tttttcgaca
     7801 tacaaaacca attgccaaac cgccagtacc acaaagctgg taagcaatga atcggtacgc
     7861 acatcatggt tggcgagtat aatggcctgg gccgacagga acatgaaggc agccatttgc
     7921 cctacccgct tgttgtacag cagcgctccc aggcgcaagg tggccaatgc agccagcagg
     7981 ctcatgataa tgctgcctaa acgatagccg ccatcagtga tgccaaacaa cttgaaaccc
     8041 ggccaggcac tccagtataa tacatggggt ttgtcgaggt aatcataggg ttgaccatca
     8101 gtataagttc ggttgataat tgtgccccat tgatcctgct gctccatgtg catggcaatg
     8161 cttgcatatt ccggggcatc tgtgtccatt agctttggaa aaaacatgcc agtgatgagt
     8221 acagcggcta taaaaatcca gagcggggca taggttctgt tcatgtcgcc aatttgcaca
     8281 aaggtgtaag atttgcaata aatgcctggc gcagttggca aaaccagccc aaacagcaag
     8341 tgccgtgcaa attggcttat tttgccaatt gaaatttcaa cccatgcgtg ctcctgtact
     8401 tgccattgtt ttgccatgct acaatgaaga ggctatcctg tccgaaacca tagcacgtct
     8461 taccgctatg atgaatgggt acatggaaga gggggttatt gcaccgggga gttttctgtt
     8521 gtttgtagac gatggcagca gggaccgtac cctttctatt ttgcgggagc acaaaagcag
     8581 catggttcgc tctttgaaac tgagtgccaa ttgtggtcat cagagtgctt tgctggcagg
     8641 catgcattat gttaccggca aggtggactg catgataagc atggatgccg atttgcagga
     8701 tgatatctcg gtgacaagcc agatgctgga ggcatacaac cggggagcgc aaattgtata
     8761 cggtgtgcgc cagagccgtg gggccgatac ctggttcaaa aagcagaccg cattagcttt
     8821 ttacaaacta atgcagcgca tgggagtgaa cctcgtttac aaccatgctg atttccggtt
     8881 gctgagcaac aaagtattga cagaatttgg ccgctaccgc gaagtgaacc ttttcctgag
     8941 aggcatcttt cccaaaatgg gattcacatc ggccacggta tattacgacc ggcaggacag
     9001 aactgcgggc gaaaccaaat acccattgcg taaaatgctg aacctcgcca tgaatggcat
     9061 cacctctttc agcaatgtgc cgctcaagat catcagttac ataggtttcc tggtgttttt
     9121 gggaagcgta ctggccagtt tgtgggtggt attcgttatt ctcacgggcc gcaatgcgcc
     9181 gggttgggca tccatcaccc tgcccattta ttttttgggt ggtgtgcaac tgctggcgct
     9241 gggcattttg ggtgaatata tttcccgtat ttacctcgaa acaaaacaaa ggccggttta
     9301 ccatattgaa gaagtaattg agtaaggaga taattaaata atcttccttt ccaaattcaa
     9361 ggtattccaa acggcaacca cctatttttg ccgctcatta cagccgtaaa atcatgattg
     9421 acgtaatact tggcctccag tggggcgatg aaggaaaggg aaagattgtt gatttttttg
     9481 cacccaacta cgatatcatt gcccgcttcc agggtggttc caacgccggg catactttgt
     9541 atgtgaatgg acaaaagatc gttttgcacc agatcccttc cggcgttttc cacgaccata
     9601 ccattaacct gattggaaat ggggtggtac tggatgcggt gacgctgaaa agagaatgtg
     9661 aggcggtggc caaatttggt gccgatgtgc gcaagaacat gttcatttcc aagcgcaccc
     9721 acctcattct gcccacccac cgggcgttgg ataaagccag tgaactgcag aagggtgaag
     9781 gcaagatcgg ctccacgctg aaaggcattg gtcctgccta tatggacaaa acgggccgta
     9841 acggtcttcg ggtgggcgac ttgctggaca aaagtttcac taccaactac attaagttgc
     9901 gcctgaagca ccagcgactc ctggataatc acaatttcaa cgaggatatt tctgcctggg
     9961 aagaagaatt ctttgaagcg gttgagtttt tgcgcagcct gaatattgta gatggtgaat
    10021 acttcctcaa cgaaaaaatc cgtgaaggca agaaagttct ggccgaaggc gcacaaggca
    10081 gcatgcttga catagatttc ggcactttcc cgtttgtaac cagcagcaac accattactg
    10141 ccggcgttat gagcgggttg ggtgtagctc cgcaaaaggt gcgtgatgtg attggtatta
    10201 ccaaggctta ttgtacccgt gtgggcggcg gtcctttccc caccgaactt cacgatgaaa
    10261 caggcgaaga actgcgcaaa gcaggcaatg aatttggcgc taccactggc cgtccgcgcc
    10321 gttgtggctg gattgacctg gtggcgttga actatgcctg catgatcaat ggtgtaac
//
LOCUS       DATIQF010000199         4003 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_2967, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000199 DATIQF010000000
VERSION     DATIQF010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4003
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2967"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            192..992
                     /locus_tag="VLL95_03145"
     CDS             192..992
                     /locus_tag="VLL95_03145"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HSR37886.1"
                     /translation="MISLQETALVWWRLVLSVLALWILFAMLRKKLVSDTTNTIQLLL
                     IGAVVGLHWLCFFGSVKYGNVSVALVTFSGAGFFSALFEPFINKGKWRPVELLLGLVC
                     MSGIYIIFHFDAQYKLGILLGVVAAALSALFSIMNKRMVSKKTDGLQITFWEMSGALV
                     MLSLLMPLYIIYRGDSWMPVGADWTWLLVLALVCTVWAFFLQLQALHYISAVTLNLTY
                     NLEPVYGILLALLFFQENKYLSPGFYVGLGLIAAAVMVQMWRVKQGKA"
     gene            complement(999..2039)
                     /locus_tag="VLL95_03150"
     CDS             complement(999..2039)
                     /locus_tag="VLL95_03150"
                     /EC_number="3.4.15.6"
                     /inference="COORDINATES: protein motif:HMM:NF015534.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyanophycinase"
                     /protein_id="HSR37887.1"
                     /translation="MKLIPFILAGLAFSSLSCSKKIENDSAMLRNVQEQAKAQPSVVS
                     YLTGSAADVSPTPVPGLLLMGGSTDVDAAVKWMLDRANGGDVVVIRSSGADGYNQYMF
                     GLSTVNSVETLIIDSRTKASDATVVSKIRNAEALFIAGGDQWNYVNYWKDTPVEDAIN
                     YLLNTRRAPVGGTSAGLAILGSTYYSAQSGSVTSDQALSNPYHRYVTLGNNDFVAAPF
                     LSNTITDSHYSQRTRQGRHIAFMARMMKDYGYANVKGIGVDEQTAVCVDGSGNAVVFG
                     SNSAYFLKNTSLGAETCVASQKLTWNRNQQAVSAYIIAGSAAGNGQFNLTTFSGSGGA
                     SRFYYVNNGILY"
     gene            complement(2130..>4003)
                     /locus_tag="VLL95_03155"
     CDS             complement(2130..>4003)
                     /locus_tag="VLL95_03155"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR37888.1"
                     /translation="VPIINHFGTQGSGGSPQGILNVSFIEDVKLSSSAFDARYDNTLS
                     SVFQFKQKNGNPERLQGNFRLSGTEAAATFDGPISKNTTFLASARRSYLQLLFKALDL
                     PIRPNYWDFQFKTTTRIDKKTTLSFLGVGAIDEFRFAEPREATPEKLYAINSNPIINQ
                     WSYTVGATLKRLTNKGYWNLSLSRNSLDNQAERFEDNQNPVEAEKTLRINSRETENKL
                     RFDVTNNLNNWKLTYGASLQYVQFYNQFFQRFRPLLTDGQGNIIQQPEILTSKSDLSF
                     LRYGGFIQAGRRIFNNRLAVSAGLRVDANNLENSESNPLKQLSPRVSASYALTSKWNL
                     SASYGLYYRLPSYTQMAFLNMTSADKTPNPGKYIQSQHWVAGAEFLPSSATRITLEGF
                     YKKYANYPISILDRISLANKGTEFGAIGNEPVQQDGRGRAYGFEFFAQQKLTKRFFGV
                     FSYTFYRSEFTDLDGKYIRAAWDNRHLLSLTWGYKFNRNWELGLKFRYQGAAPYTPFD
                     LDASQLNFLTLGTGINDYTQTNTLTLRAFNASDVRIDKKWNFRRFTLDVFLDVQNWYV
                     SKNQGLPQYTFKRNADNTDFVTTDGQPIKQNGSNAIPVILPNDDATVLPTLGFIIEF"
BASE COUNT          859 a          935 c         1102 g         1107 t
ORIGIN      
        1 tgatggtgat aatgggttcc ataggatgag tgggcaaaat tgtttcagca aatttgtcga
       61 tcccatcaat acaaaccgcc cggaaaatat cactgccggt tataccctta tttttacggc
      121 ctatgagggc tgcttttatc aaattacata ttgccgtatt gctggcgggt ttcacagcca
      181 tactcggcaa attgatcagc ctccaggaaa ctgctttggt gtggtggcga ctcgttcttt
      241 cagtattggc cttatggata ttgtttgcga tgctccgcaa gaaattggtg tcggatacca
      301 ccaacaccat tcaactgttg ctgataggcg ctgtggtagg cttgcactgg ttgtgttttt
      361 ttggcagtgt gaagtatggc aatgtttcag tggcgttggt cactttttcc ggcgccggtt
      421 ttttctccgc tttgtttgag cccttcatca acaagggcaa atggcggcct gttgaattgt
      481 tgctgggttt ggtatgcatg agtggcatct acatcatttt ccattttgat gcgcaataca
      541 agctgggcat tttactgggc gtggtggctg cggcattgag cgccctgttc tccatcatga
      601 acaaacgcat ggtgtctaaa aaaacagatg gcctgcaaat aaccttttgg gaaatgagcg
      661 gcgccctggt catgttatcg ttgctgatgc ccttgtacat tatctaccgt ggcgatagtt
      721 ggatgcctgt tggagccgat tggacctggc tgctggtact ggcgcttgtg tgtaccgtat
      781 gggcattttt tctgcagttg caggcgctgc attacatttc ggctgttacc ctcaatctta
      841 cttacaacct ggaacctgtg tacggcatcc tgttggcgtt actcttcttc caggaaaata
      901 aatacctgag ccccgggttt tatgtggggc ttgggctgat cgccgcagcg gtcatggtgc
      961 agatgtggcg ggtgaaacag ggcaaggcct gaacccaatc aatacagtat tccgttgttt
     1021 acataataga acctgctggc tccaccactg ccgctgaatg tagtgaggtt gaactggcca
     1081 ttgccggcgg cgctgccggc tatgatgtag gcactcaccg cttgctggtt gcgattccag
     1141 gttagtttct ggctggccac acaggtttca gcacccaggg aagtattctt caggaaatag
     1201 gcgctgttgc ttccaaaaac aaccgcgtta ccggatccat ccacgcatac ggcagtttgt
     1261 tcatccacgc ctatgccctt tacattggcg tatccataat ccttcatcat cctggccatg
     1321 aaagcgatgt ggcgtccctg ccttgttctt tgcgaataat ggctgtcggt aatggtattg
     1381 gaaagaaaag gggccgccac aaaatcgtta tttcctaaag tcacatagcg gtggtaagga
     1441 ttcgataaag cctggtcact ggtaacgctg ccggattgcg cactgtagta agtactgccc
     1501 agtatggcaa gccctgcgct ggtgccgcct accggggctc tacgggtatt cagcaggtag
     1561 ttgatggcat cttcaacggg ggtgtccttc cagtagttga cataattcca ttggtcgcca
     1621 ccggctatga acagcgcttc cgcattcctt attttcgaaa ccacggtggc atcgcttgcc
     1681 ttggtacgtg aatcgatgat gagtgtttct acagagttca ctgtacttaa accaaacatg
     1741 tattggttgt acccatccgc tcccgaactg cggattacca ccacgtcacc gccgttggcc
     1801 ctgtcgagca tccactttac tgcggcatcc acatcagtgc tgcctcccat gagcagcaaa
     1861 cccggtacag gggtcggcga aacatcggca gcgctcccgg ttaggtagct tacaaccgaa
     1921 ggttgggctt ttgcctgctc ctgcacattg cgaagcatgg ctgaatcatt ttcgatcttt
     1981 ttgctgcagg aaagtgaact gaaggcgagc cctgccagga tgaagggtat gagtttcatg
     2041 ataccgatgt tttgctccaa gatatgccaa tatgcctgaa gcaaaaaaag cagaccggtg
     2101 gcctgctttt tactgtttat ttcaaaggat cagaactcaa taatgaagcc aagcgtgggc
     2161 aacaccgttg catcgtcatt gggcaaaatg acagggatag cgttgctgcc attttgtttg
     2221 atgggctgtc catcggtcgt tacgaaatct gtgttgtcag cattgcgttt gaatgtgtat
     2281 tgcggcagac cctggttttt ggatacgtac cagttttgaa catcaaggaa cacatccagc
     2341 gtgaagcggc ggaagttcca tttcttgtca atgcgcacat cgctggcatt gaaggcccgc
     2401 agcgtgaggg tattggtttg ggtgtagtcg ttgatgccgg tgcccagcgt aaggaagttg
     2461 agctggctgg catcaagatc gaagggggtg tacggggcgg cgccctggta gcggaatttg
     2521 agccccagtt cccagttgcg gttgaatttg taaccccagg taaggctcag caaatgccgg
     2581 ttgtcccagg cggcgcgaat gtatttgcca tccaggtcgg tgaattcgga acggtagaat
     2641 gtgtagctga atactccgaa gaaacgcttg gtgagttttt gttgtgcaaa gaattcaaaa
     2701 ccataggcac ggcccctgcc atcctgctgc accggctcat tgccaatggc gccaaactcg
     2761 gtgcctttgt tggccaggct gatgcggtca aggatactga tgggatagtt ggcgtacttt
     2821 ttgtaaaacc cttccagtgt aatgcgggta gcactgctgg gcagaaattc agcacctgcc
     2881 acccaatgct ggctttgaat gtatttgccc gggttgggtg ttttgtccgc actggtcatg
     2941 ttcaaaaaag ccatttgggt atagctcggc aggcggtagt acaaaccata gctggcactc
     3001 aggttccatt tgctggtgag ggcgtagctg gcgctgacgc gggggctcaa ctgcttgagt
     3061 gggttgcttt cgctgttttc aaggttgttg gcatctaccc gaagcccggc actcaccgcc
     3121 agcctgttgt tgaaaatgcg gcgaccggcc tgtataaaac caccgtaacg caggaaactg
     3181 aggtcgcttt tgctggtcag gatctcgggt tgctgaatga tattgccctg cccatcggtg
     3241 aggaggggcc tgaaacgctg aaagaactgg ttgtagaact gcacatactg aaggctggcg
     3301 ccataggtca gcttccaatt gttcaggttg ttggttacat caaagcgaag cttgttctcc
     3361 gtttcgcggc tgttgatgcg caatgttttt tccgcctcca ccgggttctg gttgtcttca
     3421 aatctttccg cctggttgtc gagtgaattg cggctgagcg acaggttcca atatcctttg
     3481 ttggtaagcc ttttcagcgt ggctcctacc gtatagctcc attggttgat gatgggattg
     3541 ctattgatgg catagagttt ttcaggggtg gcttcgcggg gttcggcaaa ccggaattcg
     3601 tcaatagcgc caacaccgag gaaactcagc gtagtctttt tgtcgatgcg ggtggtagtt
     3661 ttgaattgaa aatcccagta attgggccgg atgggcaggt cgagggcttt gaaaagcaat
     3721 tgcaggtagc tgcgccgggc actggccaaa aaggtagtgt tcttgctgat ggggccatcg
     3781 aaagtagcag ctgcttcagt gccactcaat cgaaaattgc cctgcagcct ttcggggttg
     3841 ccattctttt gtttgaattg aaatacactg ctgagtgtat tgtcgtagcg ggcatcaaat
     3901 gcggaactgc tgagttttac atcttcaata aaactcacgt tgagaatgcc ttgcgggctg
     3961 ccgccgctgc cttgtgtgcc aaagtggtta atgataggca ctt
//
LOCUS       DATIQF010000200         2417 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_109492,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000200 DATIQF010000000
VERSION     DATIQF010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2417
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109492"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1057)
                     /locus_tag="VLL95_03160"
     CDS             complement(<1..1057)
                     /locus_tag="VLL95_03160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37889.1"
                     /translation="MKKIQVIAGLLMIVWMAWSFTDDKRTIFFDKGSAIPPQPQHPGD
                     PQQGFEYLISGDYLKSGLPMRLFNITKPRIPDYLQRQGSNLGVPFQFNIINAPNGARV
                     AAPNCLYCHAQVFDDSLIIGLGNSMADFSVPQNSTMQISALAYKVLANKQEQEAGANL
                     LQFTTAAAPYMVTASKGVNIADRLTAVLAAHRDPRSFEWLGKPNLPISKEVVPSDVPA
                     WWLLKKKNGMFYTGFGRGDFPRFLMAANLLTVNDTSEASAVLPHFDDVLAYLYSLQPP
                     KYPKPVNESLAAQGENIFNANCSKCHGTYGKDGQYPNLLIPSHIIKTDSALAVSNFSD
                     PEYIKWFEQSWFRMGNRK"
     gene            complement(1072..>2417)
                     /locus_tag="VLL95_03165"
     CDS             complement(1072..>2417)
                     /locus_tag="VLL95_03165"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF006701.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HSR37890.1"
                     /translation="KQTDSFQDLSLAELINRFLVLQQATEEERKQFITASWQQLSFEA
                     CFVFNKLITGGFRVGISQQMIVNALQKVTGLEAADIAHRISGQWDPAAMSFQALLYEN
                     DTRHDASKPYPFYLAYQLDEEITALGTPHEWQAEWKWDGIRGQIIKRHDLLFVWSRGE
                     ELMTERFPELQSLLSHLPNGVCLDGEIVCMDPAATESWKPLPFALLQTRIGRKTVSKK
                     QLQQAPVGFIAYDLLEWNAQDIRQQPLAERRILLEQLVAGTQHHLLKLSPVIAHSDWD
                     HLAQLRQSSREMASEGIMLKRKSSVYQVGRKVGDWWKWKIDPLTIDAVMIYAQKGHGR
                     RSNLYTDYTFAVRDGDRLVTFTKAYSGLTDKEFAEVDAFVKKNSLEKFGPVRTVKPEL
                     VFEIAFEGIAASSRHKSGVALRFPRISRWRRDKKPEEINTLDDLKTLLTGYGRRE"
BASE COUNT          527 a          620 c          638 g          632 t
ORIGIN      
        1 ctttccggtt gcccatgcga aaccagcttt gctcaaacca tttgatgtac tccggatccg
       61 agaaattact gacggccaaa gcagaatctg ttttgatgat gtgcgagggt atgagcaggt
      121 tgggatactg gccatccttg ccgtacgtgc catggcattt gctgcagttg gcattgaaaa
      181 tgttttcgcc ttgcgcagcc aggctttcat taacgggctt cggatatttc ggaggttgga
      241 ggctgtagag gtaggccagc acatcatcaa agtgcggcag tacggcagaa gcttctgagg
      301 tatcgtttac tgtcaacagg ttggcggcca tcaggaaacg gggaaaatcg ccgcggccaa
      361 agccggtgta aaacatgccg ttcttttttt tcagcagcca ccaggcgggc acatcgctgg
      421 gtaccacttc tttggatatg ggaaggttgg gctttcccag ccattcaaaa ctcctgggat
      481 cgcggtgggc tgccagcacg gctgtgaggc ggtcagcaat attgactcct ttgctggctg
      541 taaccatgta gggggccgcg gcagtggtga attgcagcaa attggcgccg gcttcctgtt
      601 cttgtttatt ggccagcacc ttgtatgcca gggcactaat ttgcatggtg ctgttttgcg
      661 gcaccgaaaa atctgccatc gaattgccca gtccaatgat cagtgaatca tcaaacacct
      721 gcgcatgaca gtacaggcag ttgggcgccg ccacccgggc accattgggc gcattgatga
      781 tgttgaattg aaagggaacg cccaggttgg aaccctggcg ttgcaggtaa tccggaatgc
      841 ggggcttggt gatgttgaac aaacgcatgg gcaaaccgct tttcaggtaa tcgcccgaga
      901 tgaggtattc aaaaccttgc tgcggatcgc cgggatgctg cggctgcggc ggaatggcac
      961 tgcctttgtc gaaaaagatc gttctcttgt cgtcggtaaa gctccaggcc atccacacga
     1021 tcatcaaaag gcctgctatc acttgtatct tcttcatggg ttgctgtgga cttactctcg
     1081 gcggccatag cctgtcagca gcgttttcag atcatccagt gtgttgattt cctccggctt
     1141 cttatcgcgg cgccagcggc tgatgcgtgg aaaccgcagg gccacaccgc ttttgtgccg
     1201 gctgctggca gctatgcctt caaacgcaat ttcaaacacc agttctggct tcacggttcg
     1261 caccggtccg aatttttcca atgaattttt cttaacaaaa gcatccacct ctgcaaactc
     1321 tttatccgta agaccgctgt aagctttggt aaaagtgacc agccggtcgc catcgcgaac
     1381 cgcaaaggtg tagtcggtat acaaattgct gcggcgccca tgaccctttt gcgcatagat
     1441 catgacggca tcgatggtga ggggatcgat tttccatttc caccagtcgc ccactttgcg
     1501 ccccacctgg tatacactgc tttttctttt gagcatgatg ccctcgctgg ccatttcgcg
     1561 gctgctttgt ctcaattggg caagatgatc ccagtcgctg tgggctatca ccggcgatag
     1621 tttcaacaaa tgatgttggg tgccggctac cagctgttcc agtaaaatgc gcctctcggc
     1681 taaaggctgc tgacgaatgt cttgcgcatt ccattccagt aagtcgtagg ctataaaacc
     1741 gaccggggcc tgctgcagtt gttttttcga aacggttttc ctgccaatac gtgtttgcag
     1801 caaggcaaat ggcaatggtt tccatgattc agttgctgca ggatccatgc acacgatttc
     1861 accatcgagg caaacgccat tgggcaaatg cgagagcaat gattggagtt ccggaaatct
     1921 ttcagtcatc agttcttctc cacggctcca cacgaaaagc agatcgtggc gtttgatgat
     1981 ctgtccgcgg atgccatccc atttccattc ggcctgccat tcgtgtgggg ttcccaaagc
     2041 ggtgatctct tcatccaatt gataggcgag gtaaaaggga taaggcttcg atgcatcgtg
     2101 acgcgtatca ttttcataca gcaatgcctg gaaactcatc gctgccggat cccactggcc
     2161 actgatgcgg tgcgcaatgt cggcagcttc cagcccggtt actttttgca gggcattcac
     2221 tatcatctgt tggctgatgc ctaccctgaa gccaccggta atgagcttgt tgaatacaaa
     2281 gcaggcttca aaagaaagtt gctgccaact cgcagtgatg aactgctttc tttcttcttc
     2341 tgttgcctgc tgcaatacca ggaagcgatt gatcagctca gcaagcgaaa ggtcctggaa
     2401 actgtctgtt tgttttt
//
LOCUS       DATIQF010000201         4248 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_33365, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000201 DATIQF010000000
VERSION     DATIQF010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4248)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4248)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4248
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33365"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2253
                     /gene="sprA"
                     /locus_tag="VLL95_03170"
     CDS             <1..2253
                     /gene="sprA"
                     /locus_tag="VLL95_03170"
                     /inference="COORDINATES: protein motif:HMM:TIGR04189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein SprA"
                     /protein_id="HSR37891.1"
                     /translation="PFKNKIKSQSPWLSFVKDFNLNPVPSNVAFKFDLNRQFGRYVPR
                     IVNTFDNKVERVDSTYDKFFKFDRFYTFRWDPARSFNVDFTALNRAWVDEPYGEINNR
                     HARDSIFSNLLSGGRNVNYDQTVVFTYNLPTQKFPFLDWTQVRASYTARYRWSASSLL
                     LQVLNQGNILENGADRMVNGELDFTKLYSKSRWLASLENEPAPRDRTTDSLKKVNKQT
                     TKQARKTQQKTSKQALDSLNSKKMSKAERKLQRKQLREEKRRERQNRSYEIAGAARAA
                     GKVLTMVKRASINWGEIFYSRIPGYLDSTRFLGNNFKSNAPGFGYILGRQPDTSFLND
                     FARRGLVTADPKFNQLFAQGYDQKINIQAQLEPFRDFIIDVNYDKSFSKDYTELFKDT
                     TGTSGHAHLTPYNTGSFSITYIAFQTMFEKFDPNKSSTMFQNFENYRQQMSLRVANNN
                     PYWKQAGAPIGADGFAVGYNRYAQEVLIPSFIAAYTNKTPDNVPLVRNDNPKITTNPY
                     GSLRARPNWRVNFTGLTRIPYLQEKFSAINITHAYQARLSMNSFTSALLFQDPFLLGQ
                     PAFIDTVSGNFVPYFLTPNITIREAFEPIFGIDITTTNQINARFEYRKSRQLSLSLLD
                     YQMSEVNSTEIVLGASYRTRGLRMPFKLPKFLNKEGGRELTNDITFRFDFSVRDDATA
                     NSRLDQNSTFSTAGQKVIKINPSIDYIMSNRVNIRLFFDQMRSIPYISTAAPTTNTRA
                     GVQLRISLAQ"
     gene            2349..2999
                     /locus_tag="VLL95_03175"
     CDS             2349..2999
                     /locus_tag="VLL95_03175"
                     /inference="COORDINATES: protein motif:HMM:NF021511.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2238 domain-containing protein"
                     /protein_id="HSR37892.1"
                     /translation="MPFTIAISKTRTAFRKNYWLQLFMIVFLAIWASTLIGTSDINNW
                     YLENTLTILFLLFLVFSYRKYVFSDTSYLLICIYLCLHVYGSKYTYAENPLGYWLQDV
                     FHTSRNHYDRIVHFSFGFLLAYPMREMFLKWLKYPSLVSWILPIEITLSISAFYELIE
                     WAVADIFFKAQGDAYLGTQGDIWDAQKDIFLAFSGAILATTIVSAIKKTFRIYETV"
     gene            3030..>4248
                     /locus_tag="VLL95_03180"
     CDS             3030..>4248
                     /locus_tag="VLL95_03180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37893.1"
                     /translation="MKACFLFVALVCCLLAAAQPNAYVDRYKEAFALYQKGEKQKALD
                     IFEKIFAEDSTETNALYFKTVLYTELRQFSEASKGYTQLCRMFPDNANYWGYGSFTYT
                     LINQPETAQFYANKAVELDPYSYQHMLHLAHACLFLAKTNQAVYWYARALQWIPNQQA
                     FEKSFLADFDLFDSLKMMPSQMAARFKEALQPLAASIQFDSKASALLDSILRYNGKEQ
                     SNEVKDKILAWKRAFVELEKNAEMPRQQVMATFITDLGLQEYRNRNRVMAMRDYFGKA
                     ESIYEDTGDSLGLANLYILLSREMLVYQRMENRFVKNPDPLRFAQKAAETIANNNLEA
                     LLPSQLHYMSEAYSILEEDAKSLACQWQQLAVSKRLNDGKGYFRATNSLAVYYAGKKQ
                     IDSALYYHQLCMKE"
BASE COUNT         1146 a         1200 c          956 g          946 t
ORIGIN      
        1 cctttcaaaa acaagatcaa atcacaatcg ccctggcttt cctttgtcaa ggatttcaac
       61 ctcaacccgg taccatccaa tgtggccttc aagtttgatt tgaatcgaca gtttggacgc
      121 tatgtgcccc gcattgtaaa caccttcgac aacaaggtgg aacgggtgga cagtacctac
      181 gacaagtttt tcaaattcga ccgattctac accttccgat gggaccccgc ccggtcattc
      241 aatgtcgact ttaccgcgtt gaacagggca tgggtagacg aaccttatgg cgagatcaac
      301 aacaggcatg caagggatag cattttcagc aacctgttga gtggcggacg taatgtgaac
      361 tatgaccaga ccgtggtgtt cacctacaac ctgcccacgc agaaatttcc cttccttgac
      421 tggacacaag tgagggccag ctatacagcc aggtaccgtt ggtcggccag cagtttgctg
      481 ctacaagtgc tgaaccaggg caatatcctt gagaacggtg ctgacagaat ggtcaatggg
      541 gaacttgact ttacgaagtt gtacagcaag agccgctggc tggcttcgct ggaaaatgaa
      601 cctgctcccc gcgaccgaac caccgattcg ctgaaaaagg tgaacaagca aacgaccaag
      661 caagcccgga agacacagca gaaaaccagc aagcaggcgc tcgattcgct gaacagcaag
      721 aaaatgtcca aggctgaacg caaactgcag cgcaaacaac tccgtgaaga aaagcgccgc
      781 gaacgccaga accgctccta cgaaattgcc ggggcggcca gggcggcggg caaagtgctg
      841 acaatggtga aaagagcctc cattaactgg ggagagattt tctacagccg catccccggt
      901 taccttgaca gcacccgctt cctcgggaac aatttcaaaa gcaatgcgcc gggctttggc
      961 tacatactcg gccggcagcc cgatacctca ttcctgaatg actttgcgcg gcgtggactc
     1021 gttacggctg atccgaaatt caaccagctc tttgcacagg gctacgacca aaagataaac
     1081 atacaggcac aactggaacc tttccgcgat ttcatcattg acgtcaatta cgacaagagc
     1141 ttctcgaaag actacaccga actgttcaaa gacaccaccg gcaccagcgg gcatgcccac
     1201 ctcactccat acaacaccgg ctcgttcagc attacctaca tcgctttcca aaccatgttt
     1261 gagaagttcg atcccaacaa gagcagtacg atgttccaga actttgaaaa ctaccgccag
     1321 caaatgagtt tgcgggtagc caacaacaac ccgtattgga aacaagccgg cgctcccatt
     1381 ggtgccgatg gttttgcagt aggttacaac cgttatgccc aggaagtatt gatcccctcc
     1441 tttattgcgg cctacaccaa caagacaccg gacaatgtac cattggtgcg caacgacaac
     1501 ccgaaaatca ccaccaaccc ctatggcagc ctgagagcca ggcccaactg gcgggtcaat
     1561 ttcacgggcc ttacccgcat cccctatttg caggaaaagt tcagcgccat caacattacc
     1621 catgcctacc aggccaggct gagcatgaac tcctttactt cagcactgct cttccaggat
     1681 ccattcctgt tgggacagcc ggcattcatt gataccgtga gcggcaactt tgtgccttac
     1741 ttcctcaccc ccaacatcac catccgcgaa gcatttgaac ccatcttcgg tattgacatc
     1801 accactacca accagatcaa tgcccgcttt gagtatcgca agagcaggca gctgagcctg
     1861 agtttgctcg actaccagat gagcgaagtg aacagcactg aaattgtact gggagccagc
     1921 taccgtaccc gcggattgag aatgccattc aagctgccta agtttttaaa caaggaaggc
     1981 ggcagggaac tgaccaatga catcaccttc cgattcgact tcagtgtacg cgacgacgct
     2041 acggccaaca gccgactcga ccaaaacagc acattcagta ccgccggtca gaaagtgatc
     2101 aagatcaacc ccagcattga ctacatcatg agcaaccggg tgaacatccg attgttcttc
     2161 gaccagatgc ggagcatacc gtacatcagc accgctgcgc ccaccaccaa tacccgggcg
     2221 ggtgtgcagt tgcggatatc gctggcgcag taatcggcgc tacctccagt tttcaacgaa
     2281 aagcgttgcc cggaacaggc aacgcttttt gcttagtatt gtaatgcatt aaaaccaatg
     2341 acctgcttat gcccttcacc attgccattt ctaaaaccag gacagcattc cggaagaatt
     2401 actggttgca actcttcatg attgttttcc tggccatatg ggccagcaca ttgataggaa
     2461 cttccgatat caacaactgg tatctcgaaa acaccctgac cattttgttc ctgctcttct
     2521 tggtattcag ctaccggaaa tatgttttca gcgacaccag ctacctgctc atttgcattt
     2581 acctctgctt gcatgtttac ggctccaaat acacgtatgc tgaaaacccg ctcggctact
     2641 ggctgcagga tgtttttcat accagccgca accattacga caggatcgtg catttcagct
     2701 ttggcttcct gctggcttat cccatgcgtg aaatgttttt gaaatggctg aagtatccca
     2761 gcctggtttc atggatacta cccattgaga tcaccttatc catcagcgct ttttacgaat
     2821 tgatagaatg ggcggtggcc gatatttttt tcaaagcaca gggcgatgcc tacctcggca
     2881 cacaaggcga tatctgggat gcacagaaag atattttcct cgccttctcc ggtgccatac
     2941 tggccaccac catcgtatcc gccatcaaga aaacattcag gatctatgaa accgtttagc
     3001 atgcctgttc atttttctac cttacacgca tgaaagcctg cttccttttt gtggccctgg
     3061 tctgctgcct gctggcagcg gcacagccaa acgcttacgt agacaggtac aaagaagcct
     3121 ttgccctgta ccagaaaggc gaaaagcaaa aagccctcga catctttgaa aaaatattcg
     3181 cggaagattc caccgaaacc aacgcccttt atttcaagac agtactctac acggaactgc
     3241 gacaattcag cgaagcttcc aaaggctata cccagctctg ccggatgttt cccgacaatg
     3301 ccaattactg gggctacggt tcattcacct ataccctgat caatcaaccc gaaacagccc
     3361 aattctacgc caacaaagcg gtggagttgg acccttactc ctaccaacac atgctgcacc
     3421 tggcacatgc ctgtttgttc ctggcaaaaa ccaaccaggc ggtgtattgg tatgcccgtg
     3481 ccctgcaatg gatacccaat cagcaagcat tcgagaaatc tttcctggcc gactttgact
     3541 tgttcgacag cctcaaaatg atgccctcac aaatggcggc ccggttcaaa gaggccttgc
     3601 agccattggc tgcttccatc caatttgact ccaaggcttc tgccctgctt gattccattt
     3661 tgcgttacaa tggcaaagag caatcgaatg aagtgaaaga caagatcctc gcctggaaac
     3721 gagccttcgt ggaattggag aaaaatgccg aaatgccccg ccagcaagta atggctacgt
     3781 ttattaccga cctcgggctg caggaatacc gcaaccgcaa cagggtgatg gcaatgagag
     3841 actacttcgg caaggcagaa tccatctacg aggatacggg cgacagcctg ggcctggcca
     3901 atttgtacat cctgctgtca cgtgaaatgc tggtgtacca gcgcatggag aacaggttcg
     3961 tgaaaaaccc ggacccgctg cgttttgcac aaaaggcggc tgaaaccatt gcaaacaata
     4021 acctcgaggc attgctgcct tcccaattgc actacatgtc ggaggcctat tccatcctgg
     4081 aagaggatgc aaaatcattg gcctgccaat ggcagcaact cgccgtttcc aaacgactca
     4141 atgatggcaa aggatatttc agggccacca acagcctggc cgtatactat gcgggcaaaa
     4201 agcaaattga ttcggctttg tactaccacc agttgtgcat gaaggaac
//
LOCUS       DATIQF010000202         1500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_261554,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000202 DATIQF010000000
VERSION     DATIQF010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261554"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(230..1114)
                     /locus_tag="VLL95_03185"
     CDS             complement(230..1114)
                     /locus_tag="VLL95_03185"
                     /inference="COORDINATES: protein motif:HMM:NF025616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4349 domain-containing protein"
                     /protein_id="HSR37894.1"
                     /translation="MKHWHAWAMALALLISCNRSGNPAESQSKEIVQNEPGVEAYAAD
                     TTAAASGETDKAPRQHNGSKEQSPPPERQRQIIKTATLDIECKDFAAFGAQLHALVQK
                     HGGWIASEEETKSDYQQQNVVCIKVSVAQFDALLNSCATAGGKVQSRKITSEDVTNAI
                     VDTKGRLQAKQQIRARYMELLKQAKTMEEILHVQNEINNITEELESTAYNLEHMQAQA
                     AYSTVYLTYFQVLEAGGDSPNFVSRLWDAVKDGGSAMLEFMIGLVALWPLWLLLLGAV
                     YWWRSRKGRWLPVRKQAA"
BASE COUNT          341 a          419 c          346 g          394 t
ORIGIN      
        1 cttcgatatc gtagccattc cacaatccat cttcactgtc gcgaaaggtc ttcaacccgc
       61 tttcggcact gatgccggcg ccggtgagca ctacgaggtg ttgctttgct gccatgtatc
      121 aaaagtagca cagaaaaaaa gcgaatgacc atcactaaat tccgggcata attgttggaa
      181 ggcatgcact gcagatcaag ctccaaataa tctgctattg ccaacatcat caggccgcct
      241 gctttcgaac aggcaaccac cggcctttgc ggcttcgcca ccaatagact gcgcccagca
      301 gcaacaacca cagcggccat aaggcaacca acccgatcat gaattccaac atggcgctgc
      361 caccatcctt cactgcatcc cacaacctgc tcacaaaatt gggcgaatcg ccccctgcct
      421 ccagcacctg gaaatacgtg aggtacacgg tgctgtaagc cgcctgcgcc tgcatgtgtt
      481 ccaggttata ggctgtgctt tccaactcct cggtaatgtt gttgatctcg ttttgcacat
      541 gcagaatttc ttccatggtt ttggcctgct tcagcaattc catatagcgg gcacggatct
      601 gttgcttggc ctgcaaccgt cccttcgtgt caacaatcgc attggtcaca tcttctgaag
      661 tgattttccg gctctgcacc ttaccgcctg cggtagcgca gctgttcaat agcgcatcaa
      721 actgcgctac cgacactttg atgcatacca cgttttgctg ctggtaatca cttttggttt
      781 cctcttcgga ggcgatccaa ccgccatgct tttgtaccaa ggcatgcagt tgagcgccaa
      841 aggccgcaaa gtccttgcat tcaatgtcga gagtggctgt ctttataatt tgccgctgtc
      901 gctccggtgg cggcgattgc tccttgcttc cgttatgttg ccggggcgct ttgtcggtct
      961 cgccgctggc cgccgccgtg gtatcggcag cgtaagcttc cacgcccggt tcattttgaa
     1021 ctatttcttt tgattggctt tctgcaggat tacccgatct gttgcaggat atcagtaagg
     1081 ccaatgccat ggcccatgca tgccagtgtt tcatatggtt ggtttttagc aatgagatga
     1141 atgagtgcac ctgtttgcac aagtacccga agttttcaat gattggcctg catgcccgcc
     1201 tttcaataat gcatcagaac ccgctgcagt aacctgttac aatcgttaag aggaatgcaa
     1261 taaaaaacgc aggcgcctgc gaaggcactt gcgtttatga aaaagacttt ttccctcagg
     1321 cagtcatcta ccgattacca gaacatggta tacaatgcaa tcaacaggcc gatgatgatg
     1381 agtgacccca cagcgaatcc tgtagaggtt ttgaacatgg acgtgtctat ttccaggctg
     1441 tgcggcttca cacctttgcg attctccatg gtgctgatca catacatgcc caatacgcag
//
LOCUS       DATIQF010000203         2640 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_155144,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000203 DATIQF010000000
VERSION     DATIQF010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2640
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155144"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(128..922)
                     /locus_tag="VLL95_03190"
     CDS             complement(128..922)
                     /locus_tag="VLL95_03190"
                     /inference="COORDINATES: protein motif:HMM:NF022750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HSR37895.1"
                     /translation="MKRTLLSIMALVSIGVGLANPQSACTIRNTSFKHGELVKFHVYY
                     TLAGIWVHAGNVTFGVKQEMLNNKPVYHVTGDGSTLSSYDWIYRVRDRYETYIDTLTL
                     LPQKFIRNVDEGGYRIYENVTFYHDKKIAVTNNGVYNVPACVQDVLSEVYMARSFDFN
                     KAKPNDLIPFDLFLDNNVYNMYIRYVGKETIKTRYGKFRCIKFKPLLLKGSIFEGGEE
                     MTVWVTDDANKLPVRIESPITVGSIKVDMMGYYNLRHPLTALLELR"
     gene            complement(919..1938)
                     /locus_tag="VLL95_03195"
     CDS             complement(919..1938)
                     /locus_tag="VLL95_03195"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HSR37896.1"
                     /translation="MSKKSTGLSDYRKIKWWLNYLVGPLLFIMIALSIYRQLHNQPNL
                     DQHWAFLRKTLVSESSSFILPAIVLIAFNWGLEALKWQQLVKHLMPISWWKALLGVLA
                     GVSFTMITPNRMGEFLGRVLYMPEGSRIKSAVLTAIGSLSQLIITLAAGLAGLFYMRQ
                     VATSSDQWPPLLTNILLFGTMAVLLAGLVVYFNLGWAIRTIEKWPPINKYAVFIHALG
                     EISGRELLKILGIALLRYIVFLVQYWLVFRALHLSIDVIPIVAGSATMFLIIAIVPTI
                     SLAELGIRSQISLYVFGLFCSDNLGILLVSGIIWLINIILPAIAGSLIMLSVKLFGKN
                     QVATS"
     gene            2019..2624
                     /gene="ruvC"
                     /locus_tag="VLL95_03200"
     CDS             2019..2624
                     /gene="ruvC"
                     /locus_tag="VLL95_03200"
                     /inference="COORDINATES: protein motif:HMM:NF000711.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HSR37897.1"
                     /translation="MPSTSQSSSGVTILGIDPGTVVMGYAVIHCTGKQMQLLHMGTLN
                     MHWEHDVFERLQRIFNTIDEVIRQYKPSQFAIEAPFFGKNVQSMLKLGRAQGVAIACA
                     MQHQLEVTEYSPKKVKQAITGNGNADKERVWAMLQMHMKLTEKPKGFDASDALAVAVC
                     HYFQSQSPLAGLGKKAKGWDDFIRKNPDRVSAAAAKGRKSS"
BASE COUNT          698 a          629 c          674 g          639 t
ORIGIN      
        1 gacaaagact tcctgttgtt ttttgaacac gacccggtga tagaatgctg caccctgcag
       61 cgcacagaaa aagggatcag gccgggtgag acaggtccgt tatcagcttt tatcggggcg
      121 tgatttgtta acgcaattcc agcagggcgg tgagcggatg acgcaggttg taatagccca
      181 tcatgtctac tttgatgctg cctacggtaa tgggtgattc aatgcgcacc ggcaatttgt
      241 tggcatcatc ggttacccaa actgtcatct cttcaccacc ttcaaaaatg gatcctttca
      301 acaacagggg tttgaatttg atgcagcgaa attttccgta ccgtgttttg atggtttctt
      361 ttcccacgta gcggatgtac atgttgtaca cgttgttgtc gaggaaaaga tcgaaaggga
      421 tcaggtcgtt gggcttggct ttgttgaaat caaagctgcg ggccatatac acttcactga
      481 gcacatcctg cacgcaggca ggcacattgt acacgccgtt gttggtgaca gcgatttttt
      541 tgtcgtggta aaaggtcacg ttctcataaa tgcggtagcc gccttcatcc acgttgcgta
      601 tgaatttttg tggcagcagc gtcagcgtat cgatgtaagt ttcgtaacgg tcgcgtaccc
      661 ggtagatcca gtcgtaactg gaaagggtgg aaccgtcgcc ggtgacatgg tacaccggtt
      721 tgttgttcag catttcctgt tttacaccaa aggtcacgtt gcccgcatgt acccagatcc
      781 cggccagcgt atagtacaca tggaatttca ccagttcgcc atgcttgaaa gaagtgttgc
      841 ggatggtgca tgccgattgt gggttggcca atccaacgcc aatgcttacc agggccatta
      901 tgctcaacaa cgttctcttc atgaagtagc tacctgattt tttccaaaga gtttaacgct
      961 caacattatc aaactaccgg cgatggcggg taaaataatg ttaataagcc agataatgcc
     1021 tgacacgagt aatatgccca ggttgtctga acagaaaagg ccgaaaacat agaggctgat
     1081 ttgggaacgg atgcccagtt cggccaaaga aatggtaggt acaatggcga tgatcaaaaa
     1141 catggtggca cttccggcca cgatgggtat aacatcgatg gacagatgca gcgccctgaa
     1201 caccagccag tattgtacca ggaagacgat gtatcgaagc aatgcaatgc ccagtatctt
     1261 cagcagttcc ctgccgctga tctcgcccaa tgcatgaatg aaaacggcgt acttgttgat
     1321 gggtggccat ttttcaatgg ttctgatggc ccagcccagg ttgaaataaa cgacaagccc
     1381 cgccagcaac acagccatgg taccaaacaa aagaatattg gtgagcagtg gtggccattg
     1441 gtcactggag gtggccacct gccgcatgta aaacaaaccc gccaggccag ctgccagtgt
     1501 gatgatgagt tgcgaaagac tgccaatggc agtaagcaca gccgacttga tacggctgcc
     1561 ctcgggcatg tacaaaaccc ggcccaaaaa ttcacccatg cggttggggg tgatcatggt
     1621 aaacgataca ccggccaata ctcccagcaa agctttccac cagctgatgg gcatcaggtg
     1681 tttcaccaat tgctgccatt tcaatgcttc aagtccccag ttgaaagcaa tgagcactat
     1741 ggcaggcagg atgaaactgc tgctttctga aaccagtgtc ttccgcagga atgcccagtg
     1801 ttgatcaagg ttgggttgat tgtgcaattg ccggtaaatg gacaatgcaa tcatgatgaa
     1861 aagcaaagga cccaccaggt agttcagcca ccattttatt tttctgtaat ccgacaatcc
     1921 cgtgcttttt ttcgacatgc aaaatactgt ttactttcga tggcagcctt gtcgcaaatg
     1981 gcaattgttt gaaaggcaat gctggcaatc caataatcat gccttccaca tcccaatctt
     2041 cttccggtgt caccatcctg ggtatcgacc ccggtacggt ggtgatgggt tatgccgtta
     2101 ttcattgtac cggcaagcaa atgcagctgc tgcacatggg cacgctcaac atgcattggg
     2161 agcacgatgt gtttgaacgc ctgcaacgca tattcaacac cattgacgaa gtgatcaggc
     2221 aatacaaacc ctctcaattt gccattgaag cgccgttttt tggcaagaac gtacagagca
     2281 tgctgaagct gggaagggca cagggcgtgg ctattgcctg cgccatgcaa caccagttgg
     2341 aagtgacgga gtattcgcca aaaaaagtga agcaggccat cactggcaat ggcaatgcgg
     2401 ataaagaaag ggtatgggcc atgctgcaaa tgcacatgaa gctcactgaa aaaccgaagg
     2461 gttttgatgc atcggatgcg ctggccgtag cagtatgcca ttattttcaa tcacaatcgc
     2521 cgctggcagg gcttggcaag aaagccaaag gctgggatga tttcattcgg aaaaatcctg
     2581 accgggtaag cgcagctgcc gcgaaaggac gcaagtcttc ttaacgcctg caaagcctta
//
LOCUS       DATIQF010000204         4221 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_140001,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000204 DATIQF010000000
VERSION     DATIQF010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4221)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4221
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140001"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            53..628
                     /locus_tag="VLL95_03205"
                     /pseudo
     CDS             53..628
                     /locus_tag="VLL95_03205"
                     /inference="COORDINATES: protein motif:HMM:NF014147.4"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            707..886
                     /locus_tag="VLL95_03210"
     CDS             707..886
                     /locus_tag="VLL95_03210"
                     /inference="COORDINATES: protein motif:HMM:NF028498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 30 beta sandwich
                     domain-containing protein"
                     /protein_id="HSR37898.1"
                     /translation="MAATASRSQLLTTAFRNPDGKLVVIVMNQGDEKTPYHLWINGKA
                     AETVALPHSITTLVL"
     gene            907..2565
                     /locus_tag="VLL95_03215"
     CDS             907..2565
                     /locus_tag="VLL95_03215"
                     /inference="COORDINATES: protein motif:HMM:NF021596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HSR37899.1"
                     /translation="MKKLMACLILCAGFSWACKKDSTPAPAPTPPSFRLQNATLNNST
                     GPTYDFVNLIPVMRYNFSDKVNRSTVTSAITFSDAGGVSVPFNISWERNDSTMLVQPA
                     SKLSGLARYSVILGKALKSVNDAALQDGFTFNFSTYIDSTPKFPTISDDSLLTLIQKQ
                     TFKYFWDFGHPVSGMARERNTSGDVVTTGGSGFGMMAMLSAIQRGFITRQQALQRMQL
                     MVDFLQNKAQRFKGAYPHWLNGISGAVVPFSANDNGADLVETSFLAMGLITVRQYFDG
                     GDAGETALRNNINSILNAIEWNWFRKNNEQVLYWHWSPDKLWTMNLKIQGWNECLVTY
                     VMAAASQNYSIPDTVYHKGYARDGAFKSGKTFYGQILPLGEDYGGPLFLSHYSFMGID
                     PNGLSDKYTNYRTQNDAHSKINFEYCKANPKNWFGYSSSCWGLTASDIPSGYTASSPT
                     NDVGVIAPTAAISSLPYTPQQSMAAIKFFYYTLGDKLWGNYGFTDAFKLQDLWFASSY
                     LAIDQGPIIVMIENYRSGLLWRLFTSAPEVKAGMKKLGFSAPYL"
     gene            2569..3915
                     /locus_tag="VLL95_03220"
     CDS             2569..3915
                     /locus_tag="VLL95_03220"
                     /inference="COORDINATES: protein motif:HMM:NF021596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HSR37900.1"
                     /translation="MMNRFSRLIFFLLVALSSNGLMAQSKPSAFDASKRPIDLSDEQL
                     LDLVQRQTIRYFWDFAHPVSGLARERSNVAYDYGDEVVTTGGTGFGVMALIVGVDRGW
                     LPRDTVAKHLLKMVKFLAKADSYHGVFPHWLNGATGKTIPFSRKDDGADLVETSYLFQ
                     GLLCVRQYFNADNNTERELRNRINWLWNDIEWNWHTHGGQEVLYWHWSPNNGWSMNFP
                     VRGFNECLIMYVLAASTPNEQYDVSPSVYHRGWAQSDFFKNGKEFYGIKLPLGFDYGG
                     PLFFSQYSFLGLNPKGLKDRYADYWEQNKNHTLINREHCIRNPKGYKGYSANCWGLTA
                     SDTYNGYAAHSPTEDLGTISPTAALSAFPYTPEYSMQALKHFYFNLGDKIWSEYGFTD
                     AFNETKGWYAKSHLAIDQGPIVVMIENHRSGLLWKLFMAIPEVQNGLKRLGFSTTE"
BASE COUNT         1105 a          993 c         1064 g         1059 t
ORIGIN      
        1 cgacatgctg catggcggaa aactgaaacc tgaattctac gattcatggg cgatgtacta
       61 taccaaattc atcaaggcat acgaggccga aggcgttccg gtgtggggca tcagcattca
      121 gaatgaaccc atggcaacgc agagatggga gagttgcatt tacaccgctg aagaagaaag
      181 agatttcctg aaaaaacacc tgggtcccac catggaaaag gaaggactga aggataagaa
      241 gatcatagtg tgggaccaca accgtgacct gatctaccaa cgggctcaaa cgtatttcaa
      301 tgaccctgaa gcggctaaat acatctgggg cattggcttt cactggtatt aagactggag
      361 cggcggcacc ccgatgtttg agaacattgc aagggtacac caggcatttc ctgacaagaa
      421 tatcttcttt accgaaggct gtgccgaaag cttcgatagc agccgttact atgcctgggt
      481 gttgggcgaa gagtacggcc gcagtatgat caatgatttc aacaacggga tggtgggttt
      541 cactgattgg aacatattgc tcgatgaaac aggaggtcct aaccatgtaa agaatttctg
      601 ttttgcgccg gtgcatgccg atacccgtac cggtcagctc atttacacca acgcctatta
      661 ttacattggc catttcagca agtacattca gcccggcgcc aagagagtgg ccgctactgc
      721 cagccgcagc cagttgctta ccaccgcgtt tcgcaatccg gatggcaaac tggtggtcat
      781 agtaatgaac cagggcgatg agaaaacacc ttatcatcta tggataaatg ggaaagctgc
      841 tgaaaccgtg gccttgccac attcaattac cactttggtt ctgtaatcaa ctttaatacc
      901 tgctgtatga agaagctaat ggcgtgtttg attttgtgtg ccgggttttc atgggcttgc
      961 aaaaaggaca gtactcctgc tcctgcgccc acacctcctt cttttcgttt gcagaatgca
     1021 accctgaaca acagcaccgg gcccacttat gattttgtaa atcttatccc tgtgatgcgt
     1081 tacaactttt cagataaagt gaatcgcagt actgtcacca gtgccattac gttttctgat
     1141 gccggtgggg tttcagtgcc tttcaacatc agttgggagc gcaacgatag caccatgctg
     1201 gtgcagcccg ccagcaaact gagcgggctt gcccggtatt ccgtgatatt gggcaaagcg
     1261 ttgaaatcgg tgaatgatgc ggccctgcag gatggcttca ccttcaactt ctctacctac
     1321 atcgattcta cacccaagtt ccccaccatc agcgacgatt cattgctgac actcatacaa
     1381 aaacaaacct tcaaatattt ctgggacttt ggccacccgg taagtggaat ggcccgtgaa
     1441 cgaaatacga gtggtgatgt ggtgactacc ggcggttccg gttttggaat gatggccatg
     1501 ctctctgcca ttcagcgtgg gttcattacc cgtcagcagg cattgcagcg catgcaactg
     1561 atggttgatt tcctgcagaa caaagcgcaa cgcttcaaag gcgcctaccc gcattggctg
     1621 aatggcatct ccggagccgt ggttcctttc agtgccaatg ataatggtgc cgatttggtg
     1681 gaaacatctt tcctcgccat gggactcatt accgttcggc aatattttga tggaggcgat
     1741 gccggcgaaa cagctttgcg caacaacatc aacagcattc tgaatgcgat agaatggaac
     1801 tggttccgca aaaacaacga acaagtgttg tactggcatt ggagccctga taaactatgg
     1861 acgatgaacc tgaaaatcca gggctggaat gaatgcctgg ttacctatgt aatggctgcc
     1921 gcttcgcaga actacagtat tcccgatact gtttatcata aagggtatgc cagagacggc
     1981 gcctttaaaa gcgggaagac attttatggg caaatactgc cgctggggga agactatgga
     2041 ggccccttgt ttttatccca ttactcattc atgggcattg atccaaatgg gttgagtgat
     2101 aagtatacca actaccgtac gcagaatgac gctcattcca aaatcaactt cgagtattgc
     2161 aaagccaatc ccaaaaactg gtttggctac agcagttcct gctgggggct tactgccagt
     2221 gatattccca gtggatacac cgccagcagt cccaccaatg atgtgggtgt gattgcacct
     2281 actgctgcca tcagttcact gccttacacg ccacagcaaa gcatggcagc catcaaattt
     2341 ttttattaca cgctgggcga caaattgtgg ggcaattatg gcttcactga tgcgttcaag
     2401 ttgcaggatc tgtggtttgc ttcatcgtac ctcgccattg accagggacc tatcatcgtg
     2461 atgattgaaa actaccggag tggtttgttg tggagattgt ttaccagtgc cccggaagta
     2521 aaagccggca tgaagaagct gggttttagt gcaccgtatc tctgataaat gatgaataga
     2581 ttttcgagat tgatcttttt cctgttggtg gctttgagct ccaatggttt gatggcacaa
     2641 agcaagccat ctgcttttga tgccagcaag cgccccattg atctttcaga cgagcaactg
     2701 ctcgacctcg ttcaacgcca aaccattcgg tacttctggg actttgccca cccggtaagc
     2761 gggctggcac gggaacgcag caatgtggca tacgattatg gcgatgaagt ggtaaccacg
     2821 ggaggtaccg gctttggggt gatggcattg attgtgggtg tagatagggg ttggctgcct
     2881 cgtgacactg tggcaaagca tttgctgaaa atggtgaagt tcctggcgaa ggccgacagc
     2941 taccatggcg tattcccgca ctggctcaat ggtgccaccg gcaaaacgat tccattcagc
     3001 cgcaaggatg atggtgctga tttggtggag acgagttatt tattccaggg gttgctgtgt
     3061 gttcgtcagt atttcaatgc cgacaataat accgagagag aattgcgcaa tcgaatcaac
     3121 tggctgtgga atgatattga atggaactgg catacccatg gcggacagga agtgctgtac
     3181 tggcactgga gccccaacaa cggatggagc atgaatttcc ctgttcgcgg tttcaatgaa
     3241 tgcctcatca tgtatgtgct ggcggcctct actcccaatg agcaatacga cgtaagcccg
     3301 tctgtgtacc atcgtggctg ggcgcaaagc gatttcttta aaaatggcaa agagttttat
     3361 ggcattaagt tgccgctggg ttttgactat ggtggtccgc tctttttttc gcagtattct
     3421 tttttgggtc tgaatccaaa aggattaaaa gaccgctatg ctgattattg ggagcaaaac
     3481 aaaaatcata cactcatcaa ccgggagcat tgcattcgca atccaaaagg gtacaagggc
     3541 tacagtgcca attgctgggg gctcaccgcc agcgatactt acaatggcta tgcggcacat
     3601 agtcctactg aagatctcgg aaccatttct cccactgcag cgctgagtgc attcccctat
     3661 acaccggaat acagcatgca ggcgttgaag catttctatt tcaatttggg cgataagatc
     3721 tggagtgaat acgggtttac agatgcattc aatgaaacaa aaggctggta cgcaaaaagc
     3781 cacctggcca tagaccaggg gccgattgta gtgatgatag aaaaccatcg cagcggattg
     3841 ctgtggaaat tattcatggc aataccggaa gtgcaaaatg ggttgaagcg attaggtttt
     3901 tcaaccacag agtagcgctg aggtatgcac agagtatcac agagaagaat gaaatgtttt
     3961 gaaaatcctc cgtgctcctc tgtgtcacct ccttcacctc tgtggtaaaa agaaagatgc
     4021 tttctgcact gctgatgaag tgattgcgac gcaacaatga tgccatctgc agcacagctg
     4081 gtatccaaaa agacaacgca ccatgaaacg attcttgcta ttctcatgct tatgctgctt
     4141 catgcaactg gcatcacaac cgctcaccaa aggcaaatac ggcgacgggc ctgacagcat
     4201 tgcgccagtg ggcgttacca a
//
LOCUS       DATIQF010000205         3808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_231135,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000205 DATIQF010000000
VERSION     DATIQF010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3808
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231135"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            244..1503
                     /locus_tag="VLL95_03225"
     CDS             244..1503
                     /locus_tag="VLL95_03225"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HSR37901.1"
                     /translation="MQVHKFGGASLSSIDRIKNIPFIIREHVTTPAVIVISAMGKTTN
                     ALEKVAEAFYANRKDDALNLFEQIKQQHLNSAKYLLVLQYNACLEQLNDFFTEAEWLL
                     HDRPVREYDYYYDQLVCIGELLSSTLVSFFLKEEKINNQWLDVRDVIRTDNNFRDASI
                     EWEITRQNATAQVLPLLQQQGIVVTQGFIGSTDENESTTLGREGSDYTAAIFANLMDA
                     ESQTIWKDVSSVMNCDPRQFPNPIPIPELSYEEVIEMAYYGAQVIHPKTIKPLFEKKI
                     PLLVKCFLDPNMPGTVITRKKAAALPPIIVKKEKQVMVEFLSKDYSFIGEHSVGQLFQ
                     LFEEEKTKPNLTQNGAIRFLAIFDDNEERLQHIATKAEEWLSVMVQKDLTLLTVRHYD
                     EAILAELLQGRHPLLLQQTPDTAQVVF"
     gene            complement(1605..2840)
                     /locus_tag="VLL95_03230"
     CDS             complement(1605..2840)
                     /locus_tag="VLL95_03230"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HSR37902.1"
                     /translation="MQLKRYFLFAFAFMACGTAFAQPPNQKDFLSFQKSFKRVGFAFE
                     AKENFLQQEFAAKGLKWPAKYLYIRSFKLDSKLEVWVKNDRKEKYRLFKTYNVCALAG
                     GLGPKRLEGDYQVPEGFYYVNQFRPNSSYHLALGVNYPNPSDRLLSDPQKPGGEIYVH
                     GSCVTVGCIPITDDMIEELYVLAAVTKNEGQDYIPIHVMPVMFKSDKSKEYLEKYLVD
                     HKDYEPMARTMEKVYYYFNQHKEIPTILIDAEGNYKMAQEYTIPKKPPPPPKFKENTA
                     PRMAAARTVNYADTDFYPYVNTQPKYPGGLEAFQKYIDAIGAELSQFIPENGAKRLYI
                     DVDFVVDAKGNVVNVKPSARANNEMNNLIIEKFETMPQWTPATRQDKAVPMKLVQNIV
                     VDAKPKMPEAKTEKAEDDY"
     gene            complement(3051..>3808)
                     /locus_tag="VLL95_03235"
     CDS             complement(3051..>3808)
                     /locus_tag="VLL95_03235"
                     /inference="COORDINATES: protein motif:HMM:NF012340.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="C1 family peptidase"
                     /protein_id="HSR37903.1"
                     /translation="GSHTIVAVAKDAAGNTAQHSVDVTINTTVVDPGNLPSSLSLVMP
                     SVQNQGGESSCVPFAVAYAARSVESYYRNNASGYALGSNVFSPEYMYNQIKSGDCGSG
                     SAVTTALQFLIDNGVCTWQTMPYSSTNGCSLFPSSTQIAEAGQFKVASYAKVLSSDVT
                     AIKSMLVAKHAVIITVGTDDSFWNAQPGFIWKAYSGPIGISHSLVVCGYDDARHAYKV
                     MNSWGTGWGDAGYSWIDYDFLPQCAFYYSYVIQ"
BASE COUNT         1025 a          908 c          895 g          980 t
ORIGIN      
        1 tacctggtac atgagaagtt ggtttagtat gatgcccaag gaaagcccat ggtgaatggc
       61 aggctgttgt caggcgatca aaatggcaag caaataggat taatggggca aaataaatgg
      121 aattgcaggg aatagccatc atgaactgtg cacacgattt cggaaaatgc gaaagccgct
      181 gccaccttac atttgcatca cttttaatgg cgtgtaatac ttacacacaa caacacattt
      241 gaaatgcagg tacacaagtt tggcggagcc agcctaagct caatagacag gataaagaac
      301 atccctttta tcatcaggga acacgtaacc acccctgcgg tgatcgtgat cagtgcgatg
      361 ggcaaaacga cgaatgcttt ggaaaaagtg gccgaagcat tttatgccaa tcgaaaagac
      421 gatgcgctga atctttttga acaaataaag caacaacacc ttaactcagc caaatacctg
      481 ctggtgttgc aatacaatgc ctgccttgag cagctgaatg atttttttac cgaagccgaa
      541 tggctgttgc atgaccggcc ggtgcgtgaa tacgattatt actacgacca actggtgtgc
      601 attggcgaat tgctgagcag cacccttgtt tccttttttc tgaaagaaga aaagatcaac
      661 aaccagtggc tggatgtacg ggatgtgatc aggaccgaca acaactttcg cgatgcctcc
      721 attgaatggg agatcacccg gcaaaatgcg actgcccagg tgttgccttt gttgcagcaa
      781 cagggaatag ttgtaacaca gggattcatt ggatcgaccg acgaaaatga aagcactacg
      841 ctggggcgcg aaggcagcga ttacactgcc gccatttttg ccaacctcat ggatgccgaa
      901 agccaaacca tttggaaaga tgtgtcatcg gtgatgaact gtgatcccag acagtttccc
      961 aaccccattc ccattcccga actgagctat gaagaggtaa ttgaaatggc ctactatggg
     1021 gcgcaggtca ttcaccccaa aaccatcaag ccgctctttg aaaaaaagat cccgctgctg
     1081 gtaaaatgtt tcctcgatcc caacatgcca ggcactgtca tcacccgcaa aaaagcggcg
     1141 gcattgccac cgatcattgt gaagaaagag aaacaggtga tggtggaatt cctgtcgaag
     1201 gattattcat tcatcgggga gcattcggtt ggacagttgt tccaactgtt tgaggaagaa
     1261 aaaaccaagc cgaatcttac gcaaaacggc gccatccgct tcctggccat ttttgatgac
     1321 aacgaagaaa ggctgcagca catcgccacc aaggctgagg agtggttgag cgtaatggtg
     1381 caaaaagacc tcaccctgct taccgtgcgg cattatgatg aagctattct tgctgaactg
     1441 ctgcaaggcc gccacccatt gctgctgcaa caaacaccgg atacggcgca ggtggttttt
     1501 taacggaaga ctattctcat tgatacaaat gaaacgggga acgcttttgc aggcattccc
     1561 cgtttttcta ttgggatatt gatgacgatt acttggaaaa ttcatcaata gtcatcttcg
     1621 gctttctccg ttttcgcttc cggcattttt ggcttggcat ctaccacaat gttctgcacc
     1681 agcttcatcg gcacggcttt gtcctggcgg gtggctggcg tccattgcgg catggtttca
     1741 aacttttcaa tgatcaggtt attcatttca ttgttggccc tggcactggg tttcacattc
     1801 accacgttgc ctttggcatc cactacaaaa tcaacatcga tgtacaagcg tttagcccca
     1861 ttctccggta taaattgaga caattctgca ccgatggcat cgatgtattt ctgaaacgct
     1921 tccagcccgc ccgggtactt tggctgtgtg ttgacatagg gataaaaatc agtatcagca
     1981 tagttaactg tacgtgccgc agccattcgg ggagccgtgt tttccttgaa cttgggaggt
     2041 ggtggtggct tcttgggaat ggtgtattcc tgcgccatct tgtaattgcc ttcggcatca
     2101 atgaggatgg tcggaatttc tttgtgctgg ttgaaatagt agtacacttt ttccattgtg
     2161 cgtgccatgg gctcataatc cttatgatct acgaggtact tctccaggta ctccttgctc
     2221 ttgtcgcttt tgaacatcac cggcattacg tggatgggaa tgtaatcctg gccttcattt
     2281 ttggtgactg ccgccagcac atacaattct tcgatcatgt cgtcggttat ggggatacat
     2341 cccacggtaa cacaactgcc gtgcacataa atttcgccac ccggcttctg aggatcagac
     2401 aacagtctgt cgctggggtt gggataattc acacccagtg ccaggtgata gctgctgttg
     2461 ggcctgaact ggtttacata atagaagccc tccggcacct ggtaatcgcc ctccaggcgt
     2521 ttgggaccaa gcccacctgc cagcgcacac acgttgtaag ttttaaaaag cctgtacttc
     2581 tccttcctgt cgttctttac ccaaacttcc agtttgctgt ccagtttgaa agaacggatg
     2641 tacaggtatt tggcaggcca tttcagccct ttggcagcaa attcctgttg caggaaattt
     2701 tccttggctt caaaggcaaa acctaccctt ttgaaggatt tctggaaact caggaaatct
     2761 ttttgattgg ggggctgggc aaatgctgta ccacatgcca tgaaagcaaa cgcaaataag
     2821 aaataccgct tcagttgcat accaatcact gctgttcaat tttaacgggt gcaagccttc
     2881 taaaaccaac gatactggcc aggtaatatt gcctgcatca ggtcaaaaat aaggcatatg
     2941 aaccgaagcg atcttaaatg accgcatcgg ggtcggctga cctgcagcta aatagttgat
     3001 tttccgttgc ctgcctgcca aatggctaat ggatagttct gaaatcttaa ctattgtatt
     3061 acatacgaat agtagaaagc gcattgtggt aaaaagtcat aatctatcca tgaataaccg
     3121 gcgtctcccc aaccggttcc ccaggaattc atcaccttgt aggcatgcct ggcatcgtcg
     3181 tagccacata ctaccaacga atgcgaaatt ccaataggac cagaataggc tttccaaata
     3241 aagccaggct gtgcgttcca gaaactatcg tcagtgccaa cggtaatgat cactgcatgt
     3301 tttgcaacca acatggactt aatggccgta acatcggagg acaaaacctt ggcataggaa
     3361 gcaaccttga attggccagc ttcagcgatt tgtgtagagg aggggaataa actgcaacca
     3421 ttggtggaac tatagggcat ggtctgccac gtacatacac cattatcgat caggaattgt
     3481 aatgcagtag ttacggcaga cccactgccg caatcaccgg atttaatttg attgtacatg
     3541 tattcggggc tgaaaacatt ggaaccgagt gcataacccg atgcattatt cctgtagtat
     3601 gattcgaccg acctcgcagc atatgcaacg gcgaagggca cacatgaact ttcacccccc
     3661 tggttctgta cagaaggcat cacgagtgaa agacttgaag gcaaatttcc cggatcaaca
     3721 actgttgtgt tgattgtgac atccaccgaa tgctgggcag tattccccgc agcatccttt
     3781 gccacagcta caatggtatg gcttccag
//
LOCUS       DATIQF010000206         4477 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_155156,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000206 DATIQF010000000
VERSION     DATIQF010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4477)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4477
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155156"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..592
                     /locus_tag="VLL95_03240"
     CDS             <1..592
                     /locus_tag="VLL95_03240"
                     /inference="COORDINATES: protein motif:HMM:NF012379.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
                     /protein_id="HSR37904.1"
                     /translation="MAERLGLRNPEVFKMLWVIDFPLFEFALEDQDGGGAGRWVARHH
                     PFTSPKPDHISIMIDNGTKVEDLDKYLEHPYARIKANAYDLVLNGNEIGGGSIRIFQR
                     ELQEKMFAALGLDEHEQKEKFGFLLGAFEYGAPPHGGLAFGFDRLCAILGGSESIRDF
                     IAFPKNNAGRDVMLDAPGEIAQKQLDELNIALNLKA"
     gene            595..1080
                     /locus_tag="VLL95_03245"
     CDS             595..1080
                     /locus_tag="VLL95_03245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37905.1"
                     /translation="MLTFYRILSYLLLPVALILGLATLAGLLMALGNLSVLLSVFACG
                     ASTIYIIASFMFLQRVIEAKRVVRHSLRDWVRANGFVAMGFGALLIVQSYMFLTNPDF
                     MKQVMEQVATMQQSAVPPASVMQSMKAALVIMQLFSVLLLVHIGLSFRLLRQYASYFD
                     Y"
     gene            1341..2777
                     /locus_tag="VLL95_03250"
     CDS             1341..2777
                     /locus_tag="VLL95_03250"
                     /inference="COORDINATES: protein motif:HMM:NF025761.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HSR37906.1"
                     /translation="MESVTPNLNTWDEMFSFEGVRERYRNVFETLQQMPPELMHAKDR
                     QAADFFMNQGITFTVYSDNKGIERIFPFDIVPRIITGREWDHIESGIKQRLKALNMFL
                     KDVYHEQQIIKDGIIPASLVASCPHFLKEAVGIKVPYDIYVHISGIDLIRGNDGVFYV
                     LEDNLRTPSGVSYMLENREVTKRIFPDLLAQNHVRMVNTYPMKLLNILSALSPRAVDQ
                     PNVVLLTPGIYNSAYYEHTFLARQMGIPMVEGRDLVVDNQKVFMKTTNGLQPVDVIYR
                     RLDDDFLDPLVFRPDSVLGVPGIMSAYRKGSVALVNAVGNGVADDKAVYAYVPAMIRY
                     YLNEEPVLRNVPTYRLEVEDEMKYVFGNLNNMVVKQTNQSGGYGLVIGNKATDQELEE
                     LKQAILQNPRNFIAQPIIQLSTVPCLVDGKLEARHVDLRPYALCGPDGIEIVPGGLTR
                     VALRKGSLVVNSSQGGGSKDTWVVDIEE"
     gene            2857..3801
                     /locus_tag="VLL95_03255"
     CDS             2857..3801
                     /locus_tag="VLL95_03255"
                     /inference="COORDINATES: protein motif:HMM:NF016086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-E domain-containing protein"
                     /protein_id="HSR37907.1"
                     /translation="MMLSRIADSMFWLNRYMERADGIVRSLRYFYILGFDVHEGDDAG
                     YKPLLQCFTALNDSKQEAMKHDTPAVLHYLIADSNNINSVKVLLGKARENARGSQDKI
                     TKEVWEQVNAMYHYINEENVSEQLKGEGALKVLDKLEKHCLMYNGIVDSTMPRGLGWE
                     FMNIGKFIERCLHTVDLTESYLQPIGYQLDTHDDLVYWRRLLFALSGYELYLKTNRGS
                     HHTRQAISQVIFNPDFPRSVVYSLVRLEKYLEALLRESDHPGGSQLLKRFGRLKSMVV
                     YTDTGQMQGDELHQLLDSIRKQVWDFSAELSRLFFSYT"
     gene            3888..>4477
                     /locus_tag="VLL95_03260"
     CDS             3888..>4477
                     /locus_tag="VLL95_03260"
                     /inference="COORDINATES: protein motif:HMM:NF019977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase N-terminal domain-containing
                     protein"
                     /protein_id="HSR37908.1"
                     /translation="MPVFKIHHITRYQYDRPVKESVSQVRIYPLEDPGQHLRQFDLHI
                     SGDPEVAVFSDFYGNKVGDFSLLQPHQELVIDSRFAIQTSVRDEAAFHSTMKVDQLQP
                     LMEKDINLLRLREPERIGEQWVIDNILKDLKLQDKSISEMVWACSEFIYCNFRYEKGI
                     TSVETTVDEILHHRSGVCQDFAHVCLQLLRTLGIPA"
BASE COUNT         1109 a         1098 c         1209 g         1061 t
ORIGIN      
        1 aatggcagag cgtttgggcc tgcgcaatcc cgaagtgttc aagatgctgt gggtgatcga
       61 cttcccgctg tttgaatttg ccctcgaaga ccaggacggc ggtggtgccg gtcgctgggt
      121 ggcccgtcac catcctttca ccagtcccaa gcccgatcat atttccatca tgatcgataa
      181 cggaaccaag gtggaagacc tcgacaaata ccttgagcat ccgtatgccc gcatcaaggc
      241 caacgcttac gacctggtgc tgaacggcaa cgaaattggc ggtggcagca tccgtatttt
      301 ccaaagggaa ctgcaggaaa aaatgtttgc ggcactcggc ctcgatgagc atgagcaaaa
      361 agagaagttt ggcttcctgc tgggagcgtt tgaatatgga gccccgccac atggtggact
      421 agcttttggc ttcgaccgtt tgtgcgccat actcggtggc agcgaaagca tccgcgattt
      481 catcgccttc cccaaaaaca atgcgggccg cgatgtgatg ctggatgcgc cgggagaaat
      541 agcccagaag cagttggatg aattgaacat tgccctcaac ctgaaagcct gattatgctg
      601 acattctatc gcattttgtc ttacctgctg ctaccggtag ccttgatact gggattggct
      661 acactggcgg gcttactgat ggcactggga aatctttccg ttttgctgtc ggtatttgcc
      721 tgcggtgcca gcaccattta catcatcgcc agcttcatgt ttttgcagcg ggtgatagaa
      781 gccaaacggg tggtgcgcca ctcgctgcgt gactgggtgc gggccaatgg ctttgtagcc
      841 atgggctttg gcgctttgct gatcgtgcag tcgtatatgt tcctcaccaa tcccgatttc
      901 atgaagcagg tgatggagca ggtagccacc atgcaacaat ctgcggtgcc tccggcctct
      961 gtcatgcaat ccatgaaggc agcgctggtg atcatgcagt tgtttagtgt cctgttgctg
     1021 gtgcatattg gcctgagctt tcggttgctg cgccagtacg cttcctactt cgattattga
     1081 aactgccgga aacaaaaaat cattttcaaa ggcattggtc atccaccaat gccttttttc
     1141 attaatttcc accagtacga ttgctaccat gtagaaaaaa tccggaccgg gtctggaggt
     1201 attggcaatt agccctctta caaacacaaa agggtagcag gatatcaggc aagttcgctt
     1261 ccattcatat cgctggctgc cattcatgag gttttgaaag gagcatggcc atatctgcag
     1321 ccgactaaac cactactgct atggaaagtg taacgcccaa tctcaacacc tgggatgaaa
     1381 tgttttcgtt tgaaggcgtg cgggaacgct atcgcaatgt gtttgagaca ctgcagcaaa
     1441 tgccgccgga actgatgcat gccaaagaca ggcaggctgc ggatttcttc atgaaccagg
     1501 gcatcacctt tactgtatac agcgacaaca agggcattga gcgcatcttc cctttcgata
     1561 ttgttcccag gatcattacc ggccgggaat gggatcacat agagtcaggg atcaagcaaa
     1621 ggctgaaggc attgaacatg tttttgaaag acgtgtacca tgagcagcag atcatcaaag
     1681 acgggatcat acctgcctcg ctggtggcca gttgcccgca tttcctgaaa gaggccgtcg
     1741 gcatcaaggt gccttacgat atctatgtgc acatctccgg catcgatctg attcgcggga
     1801 acgatggcgt attctatgtg ctggaagaca acctacgtac gcccagcggt gtaagctaca
     1861 tgctggagaa cagggaggtg accaaacgaa ttttcccgga tctgctggcg caaaatcatg
     1921 tgcggatggt gaacacctat cccatgaagc tgctgaatat cttgtcggcc ttgtctcccc
     1981 gggcggtaga tcagcccaac gtggttttgc tgacaccggg tatttacaac tcggcttatt
     2041 atgaacatac tttcctggca cggcaaatgg gcatcccgat ggtagaagga cgcgacctgg
     2101 tggtggacaa ccagaaagtg ttcatgaaaa ccaccaacgg cctgcagccg gtggatgtga
     2161 tctaccggcg gctggatgat gatttcctcg atccgctggt gttccgtccc gacagtgtgt
     2221 tgggcgtgcc gggcatcatg agcgcctatc gcaaaggatc ggtagccctg gtgaatgccg
     2281 tgggcaacgg cgtggccgat gacaaagcgg tgtatgccta tgtgccggcc atgatcaggt
     2341 attacctcaa cgaggagccg gtgctgcgca acgtgccaac ctatagattg gaggtggagg
     2401 atgaaatgaa atacgtgttt ggcaacctga acaacatggt ggtgaagcaa accaaccaaa
     2461 gtgggggata tggactggtg attggcaaca aagccacgga ccaggaattg gaagaactca
     2521 agcaggcgat cctgcagaac ccgcgaaact ttattgccca gcccattatt caactcagca
     2581 ccgtgccgtg cctggtggat ggcaagctgg aagcacgtca cgtagacttg cgcccttatg
     2641 ccctttgcgg gcccgatggc atcgagatag taccgggtgg actgacacgg gtggctttgc
     2701 gcaaaggcag cctggtggta aacagcagcc agggcggcgg tagtaaggat acctgggtgg
     2761 tggatattga agaatagttc actggttcac aagttcacga gttgcaccaa acgaccagcg
     2821 accaacaaaa aacaaccaac aacaaacaac tcacctatga tgctaagccg aatagccgac
     2881 agcatgtttt ggctgaacag gtacatggag cgggccgatg gcatagtgcg gtcgctgcgc
     2941 tatttctata tccttggctt tgatgtgcac gaaggagacg atgccggcta caaacccttg
     3001 ctgcaatgct tcaccgcgtt gaacgattcg aagcaggaag ccatgaagca cgatacgccg
     3061 gccgtattgc attacctcat tgctgacagc aacaacatca actcagtaaa agtgttgctg
     3121 ggcaaggcaa gagagaatgc ccgtggctcg caggataaga tcaccaagga agtgtgggag
     3181 caggtgaatg cgatgtatca ctacatcaat gaagaaaatg taagcgagca actgaaagga
     3241 gaaggcgctt tgaaagtgct tgacaaactg gagaagcact gcctgatgta caatggcatt
     3301 gtagacagta ccatgccccg cggattgggt tgggagttca tgaatattgg aaaattcatt
     3361 gagcgttgtt tgcacacagt agacctcaca gaatcctatt tgcaacccat cgggtaccag
     3421 ctcgatacac acgatgacct cgtgtattgg cgccgcttgt tgtttgcttt gtcgggttat
     3481 gaattgtacc tgaaaaccaa ccgcggcagc catcataccc gccaggccat tagccaggtg
     3541 atcttcaacc ccgattttcc gcggtctgtg gtatacagcc tggtgcgttt ggagaaatac
     3601 ctggaagcat tgctcaggga aagtgatcat ccgggtggca gccaattgct caagcgtttt
     3661 ggccggctga aaagcatggt ggtgtatacc gataccggcc aaatgcaagg cgatgaactg
     3721 caccaattac ttgacagcat caggaaacaa gtgtgggatt tttcagccga actgagccgc
     3781 ctgtttttct cttacacctg atttttattt atcaacagcc ttaataaaat gcgggcctgg
     3841 cctactgtgc tacccttagc ttcggccgcg acaatcaata cactggcatg ccggttttca
     3901 agatccatca tatcacccgt tatcagtacg accgaccggt aaaggaaagt gtgagccagg
     3961 tgcgcattta cccgctggag gatcccgggc agcatttgcg ccaattcgat ttgcacatca
     4021 gtggtgatcc ggaagtggcc gtgttcagtg atttctatgg caacaaagtc ggcgattttt
     4081 cactgttgca gccacaccag gagttggtga ttgacagccg ctttgccatc caaacttctg
     4141 tgagggatga agccgctttc cactcaacca tgaaggttga tcagttgcag cctttgatgg
     4201 aaaaggacat caacctgctt cggctgcgtg aacctgaacg cattggtgag cagtgggtga
     4261 ttgacaacat tcttaaagat ctcaagttgc aggacaagtc gatctctgaa atggtttggg
     4321 cctgcagtga attcatctac tgcaattttc ggtacgaaaa agggatcacc tctgttgaaa
     4381 ccaccgtgga tgaaatcctc catcaccgga gtggtgtgtg ccaggatttt gcacacgtat
     4441 gccttcaact gttgcgtacg ctgggtatcc cggccag
//
LOCUS       DATIQF010000207         2891 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_231142,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000207 DATIQF010000000
VERSION     DATIQF010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2891
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231142"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..720
                     /locus_tag="VLL95_03265"
     CDS             <1..720
                     /locus_tag="VLL95_03265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37909.1"
                     /translation="NPLGTPAIEIVKGDAKTFLQTGDTILSTSTPGFFGSIFDKLGPT
                     QKALDKLLTSMDSVAGKVNKTITSREQENIRNVIANLSKVSQELTLTIASVNSMLDAQ
                     NGTLSKSANNLEQVTGTLAANKEKITTIADNLSATSQKLRDLDLESVLAELTSTLEYT
                     KETLNKVNNKDGTVGMLLNDKQLYDNLNYTINSLNLLLQDVRVHPKRYVNLSVFGKKD
                     KSEPLMKPLPTDSATLEQRKN"
     gene            756..1361
                     /gene="coaE"
                     /locus_tag="VLL95_03270"
     CDS             756..1361
                     /gene="coaE"
                     /locus_tag="VLL95_03270"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: protein motif:HMM:TIGR00152.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HSR37910.1"
                     /translation="MLKVGITGGIGSGKSVVSRLFEVLGIPVYYADAEAKQLMQTDAT
                     LREKIISHFGEAAYQHDQLNRAYLAAQVFGNADKTQLLNSLVHPVVIAHAEQWMQQHE
                     ASQKFPYVLKEAALFFESGSAAGLDYIIGVSAPQALRLQRVMHRDGVGRQEVLARMSR
                     QIDESLKMKLCDFVLINDEQQLLIPQVLALHEQLLALRQAV"
     gene            complement(1367..2080)
                     /locus_tag="VLL95_03275"
     CDS             complement(1367..2080)
                     /locus_tag="VLL95_03275"
                     /inference="COORDINATES: protein motif:HMM:NF019559.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysoplasmalogenase"
                     /protein_id="HSR37911.1"
                     /translation="MQNRTSIQLANTGFLVVLLVNLLSNHFHWQLPQVVSKALLMPLL
                     VTQLFLAKRNTEEKAWRLVLAGLLASWLGDLFLLKGAEPSFFIAGLLSFLTAHVLYIL
                     YYRRYKPSLDQTWFWKHPVISFLVAGYGIAYYAFLLEKLGTMVIPVAIYCMVITIMLL
                     QALACQETVAPSVYRLFVWGAALFVLSDSILAFNKFYMPLEWAGVAIMATYGFAQLLI
                     TNGAMANGDRKDDTPPSES"
     gene            complement(2103..>2891)
                     /locus_tag="VLL95_03280"
     CDS             complement(2103..>2891)
                     /locus_tag="VLL95_03280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37912.1"
                     /translation="ITGLSFEHKPQVATTPAFIKFYSETRGKILSLAENDVEAFLGMA
                     LQFLNIGNPVELKGLGTISKQKYGSFVMAPGYFIPLKEDENNNRFRDRVLNEEAGGET
                     NFFGKKEPQSSNSAKLIIAIAVIVVTAVAGYWLYTTFLKAPADTANTTTTTDTLNVPQ
                     QVVPPPTVADTNAVATTTTTAVVDSNAVQKWKAVFREEQEKAKALQVWSNYQRVSTPI
                     QMETADSVSFRFFIVLESSLRDAARKTDSLSRFFARPVKLEPFK"
BASE COUNT          776 a          726 c          741 g          648 t
ORIGIN      
        1 aacccattgg gtacgcctgc cattgaaatc gtgaagggcg atgccaagac ctttctgcaa
       61 accggcgata ccattttgag taccagcaca cccggtttct ttggaagcat attcgacaaa
      121 ctgggcccta cccaaaaggc gcttgacaaa ctgctgactt cgatggattc ggtagctggc
      181 aaggtgaaca aaaccatcac cagcagggag caggaaaaca ttcgcaatgt cattgccaac
      241 ctgagcaaag tatcgcagga actaacgctt accattgcat cggtaaacag catgctggat
      301 gcgcaaaacg gcaccttgtc caaatcggcc aacaacctgg agcaggtaac cggtacgctg
      361 gctgccaaca aagaaaagat caccaccatt gctgacaacc tgagcgccac ttcgcaaaaa
      421 cttcgtgacc tcgatcttga aagtgtgctg gcggaactca ccagcacgct ggagtacacc
      481 aaagaaacac tcaacaaggt gaacaacaag gatggtaccg taggcatgct gctgaacgac
      541 aaacagcttt acgataatct caactatacc atcaacagcc tgaacctgct gctgcaggat
      601 gtgagggttc atcccaaacg ctatgtcaac ctgagcgtct ttggcaagaa agacaaaagc
      661 gaacccctca tgaagccgct gcccaccgat tcggccaccc tggagcaacg caaaaattaa
      721 acagggccag gttgcactgg ccacatgcac aagctatgct gaaagtggga atcactggtg
      781 gaattggctc cggaaaatcg gtggtgtccc gcctgttcga ggtgttgggg atacccgttt
      841 actatgccga cgctgaagca aagcaattga tgcaaacgga tgcgacactt cgcgaaaaga
      901 tcatttcgca ttttggcgaa gccgcctacc agcatgatca actgaacagg gcctacctgg
      961 ccgcacaggt ttttggcaat gccgataaga cccaactgct caacagcctg gtgcatcctg
     1021 tggtgatagc ccatgccgaa cagtggatgc aacagcatga ggcttcgcaa aaattcccct
     1081 acgtgctgaa agaagcggcg ttgttttttg aatcgggttc agccgccggt cttgactaca
     1141 tcatcggcgt aagtgcacca caggctttgc gcctgcagcg ggtaatgcac cgcgatgggg
     1201 tggggaggca ggaagtgctt gcccgcatga gcaggcaaat agacgaaagc ctgaaaatga
     1261 aactttgcga ttttgtgttg atcaatgatg aacaacaatt gctgataccg caggtattgg
     1321 ctttgcacga gcaactgctg gcattgcgcc aggccgtatg atcagtttat gattcgcttg
     1381 gaggtgtatc atccttcctg tcgccatttg ccattgcgcc attggtaatg agtaattgcg
     1441 caaagccata ggtggccata atggccacac ctgcccattc cagcggcatg taaaacttat
     1501 tgaaggccag tatggagtcg gacagtacaa acaaggcggc tccccaaaca aagaggcgat
     1561 ataccgatgg cgccaccgtt tcctggcagg ccagtgcctg cagcagcatg atggtaatga
     1621 ccatgcaata aatggcaacc ggtatcacca tggtgcctaa tttttcaagc aggaaagcgt
     1681 aataggcaat gccatacccg gccaccaaaa aagagatgac agggtgtttc caaaaccagg
     1741 tttgatcgag tgagggtttg tagcggcggt aatagagaat gtagagcaca tgggcggtca
     1801 ggaaactgag cagtccggca atgaagaaag aaggctctgc gcctttcagc aaaaacaagt
     1861 cgcccagcca tgaggccagc aaacccgcca acacaaggcg ccacgctttc tcttcggtat
     1921 ttcttttggc caaaaacaac tgcgtcacca gcaaaggcat cagcaatgct tttgaaacca
     1981 cctgtggtaa ttgccagtga aaatggttgc tcagcaggtt gacaagcagc actacgagga
     2041 agcccgtgtt tgccaactga atggaagtgc ggttttgcaa tgtgggggaa ttttccctaa
     2101 agctacttga acggctccaa ttttacaggc ctcgcaaaaa aacgtgacag agagtcggtt
     2161 ttgcgggcag cgtcacgcag cgatgattcg agtactatga aaaacctgaa ggacaccgag
     2221 tcagcggttt ccatctgaat gggtgttgat actctttgat aattggacca aacctgcagg
     2281 gcttttgcct tctcctgttc ttcacgaaac acggctttcc acttctgcac agcattggaa
     2341 tcgacaacag ctgtggttgt ggttgttgca acagcatttg tatcggccac agttggcggt
     2401 ggcaccactt gttgaggaac attcaatgta tcggttgtgg tggtcgtatt cgcggtgtcg
     2461 gcaggcgctt taagaaaagt ggtatacagc caatagcctg caaccgcagt caccacaatg
     2521 acagcaatgg caataatgag tttggctgaa ttggaacttt gtggttcttt ctttccgaag
     2581 aaattggttt cgccgccggc ctcttcgttc aacaccctgt ctctgaaccg gttgttgttt
     2641 tcatcttcct tcagggggat gaaatagccc ggcgccatca cgaacgagcc gtacttttgc
     2701 ttgctgatgg tgcccaatcc cttcaactcc accgggttgc caatatttaa aaactggagc
     2761 gccatgccca aaaacgcttc cacatcgttt tcagccagcg acaagatctt gcccctcgtt
     2821 tcgctgtaga acttgatgaa agcaggggtg gtggctacct gtggtttgtg ttcaaaggaa
     2881 aggccggtga t
//
LOCUS       DATIQF010000208         1701 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_3034, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000208 DATIQF010000000
VERSION     DATIQF010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1701
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3034"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..854)
                     /locus_tag="VLL95_03285"
     CDS             complement(<1..854)
                     /locus_tag="VLL95_03285"
                     /inference="COORDINATES: protein motif:HMM:NF027446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4836 family protein"
                     /protein_id="HSR37913.1"
                     /translation="MKIRKIFGLTLLAAVLLTACSKKGPSYAKYVPKSAGYVLAFDLK
                     RLTQKLEQDSLTFENMLTVINEDKSSKAYTEALSKWNEFKDAGVDFEQKVLVAVPALD
                     VTAGSVSFQLVAGLKDPSKLEAFIAKQKDAPKIEKEGSLSMVDMNGVVLGWNKEAVML
                     VGAQSTPSYDLLNDSSDAPIGAVPGAEGEKALLKKYFDLKKDESVLSLDEFGQLMEEP
                     ADVAVFTNSESMTGTQVSPLMATMQSKLKDLLQGMYSTTKINFEQGKIVVESNSFIGT
                     KMGDLLKK"
     gene            1065..1526
                     /locus_tag="VLL95_03290"
     CDS             1065..1526
                     /locus_tag="VLL95_03290"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: protein motif:HMM:NF003559.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008929 - methylglyoxal synthase activity
                     [Evidence IEA];
                     GO_process: GO:0019242 - methylglyoxal biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HSR37914.1"
                     /translation="MKYEIRHLPARKRIALVAHDHKKDDIIDWAWFNREMLAKHELYA
                     TGTTGKLLEEKLDRPVRRLMSGPLGGDQQIGAMIANAEIDMLIFFWDPMEAQPHDTDI
                     KALLRLVAVWNVPMACDRSTADFMLTSPLMNQPYECKVPDYSSYLKRNIPL"
BASE COUNT          415 a          459 c          385 g          442 t
ORIGIN      
        1 aacttcttca gcaggtctcc cattttggta ccgatgaatg aattgctttc caccacaatc
       61 ttcccttgct caaagttgat cttggtggtg ctgtacatgc cttgcagcaa atctttcaat
      121 ttgctttgca tggtggccat caatgggctt acctgtgtgc cggtcatcga ttcgctgttg
      181 gtgaaaacag ccacatctgc aggttcttcc atcagttggc cgaactcatc cagcgacaac
      241 acgctttcat cttttttcag gtcgaaatat ttcttcagca acgccttctc tccttccgca
      301 cccggtacgg cgccaatggg agcatccgaa ctgtcattga gcaaatcata gcttggcgtg
      361 gattgagccc ctaccagcat cactgcctcc ttgttccaac ccaacaccac accattcatg
      421 tccaccatcg aaaggcttcc ttccttttcg atcttggggg cgtccttttg cttcgcaata
      481 aaggcttcca gttttgacgg gtctttcaat ccggctacca gttgaaagct cacactgccg
      541 gcggttacat caagggcggg cactgccacc agcacctttt gttcaaaatc gacccccgcg
      601 tctttgaatt cattccactt cgacaatgct tccgtgtacg ctttcgatga tttgtcttca
      661 ttgataacgg taagcatatt ctcgaaggtg agggaatcct gctccagctt ctgggtcaag
      721 cgcttcaaat cgaaggccag cacgtagcct gctgatttgg gaacatactt tgcataagag
      781 gggccctttt tactgcaagc tgtcagcaat actgcagcca gcaaagtcaa cccgaatatt
      841 ttcctgattt tcatggatcg tattttggac aaaataacgc cgattgcacc caatggcaaa
      901 aatcgctgcg ggcttctcca gcatcgggaa ataagcagga tgaattaagg aaaaagggga
      961 tggcaggtaa gtcaaaatcg gccgggaacg catgatgttg caaaagccac tacattaggg
     1021 ctggcctgcc tggtcataat ccgcaacagc atcaatcttt cggtatgaaa tatgaaataa
     1081 gacacctgcc tgcccgcaaa cgcattgcac ttgtggctca cgatcataaa aaggacgaca
     1141 tcatcgactg ggcctggttc aaccgcgaaa tgctggccaa gcacgaattg tatgccaccg
     1201 gtaccaccgg caaactactc gaagaaaagc tggaccggcc ggtacgccgg ctgatgagcg
     1261 gtcctttggg aggggatcag cagataggcg ccatgatcgc caatgccgaa attgacatgc
     1321 tcattttttt ctgggatcct atggaagcac aaccacacga taccgatatc aaggccttgc
     1381 tacgtcttgt agcggtgtgg aatgtaccca tggcctgtga ccgaagtacc gctgacttca
     1441 tgttgaccag ccccctcatg aaccagcctt atgagtgcaa ggtgcccgat tacagcagtt
     1501 acctgaaacg caacatccct ctgtaagcct ttcatgaaaa actacgacac cgataagctc
     1561 agcccctatg tggtagtgga agcaaaacca ggtcggctgc atcttcagct caatgccttc
     1621 agccgtttca ttcatctttt tacggtggcc atcttaccgg tttgcattgt gctgatactt
     1681 gtggtttcag cctatttact g
//
LOCUS       DATIQF010000209         1852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_18321, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000209 DATIQF010000000
VERSION     DATIQF010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18321"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..912
                     /locus_tag="VLL95_03295"
     CDS             <1..912
                     /locus_tag="VLL95_03295"
                     /inference="COORDINATES: protein motif:HMM:TIGR00275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacetone oxidase family FAD-binding enzyme"
                     /protein_id="HSR37915.1"
                     /translation="KSDSSQSVIDCLLGEANKFHVDLMLHFAVEKIAHSEKGWKIEAA
                     DKRSLEADFLCIACGGFPKQEMFHWITTATGHTIFPPIPSLFTFNTPGHPITKLMGVA
                     AAVHIKIAGLKWESGGPLLITHWGLSGPAVLRLSAFAARDLHERQYAYRVIINWLPEF
                     NEASLREKVMAHRQAKGSQKVVNTEWVTLPERLWLFLLGECQIGADLRWADLPAQKQN
                     QLIKQLCGYELEAKGKTTFKDEFVTAGGIDTSEVDASTMSSRKAPGLFFAGEILNVDG
                     ITGGYNFQHAWSSGFAAAKAIADSLSS"
     gene            1048..>1852
                     /locus_tag="VLL95_03300"
     CDS             1048..>1852
                     /locus_tag="VLL95_03300"
                     /EC_number="2.3.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF007128.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (Si)-synthase"
                     /protein_id="HSR37916.1"
                     /translation="MGYLKDRFKAKADVAAAEIKDILKDHGNQKIGEVTLSQIYQGMR
                     GMTGLVTETSLLDAQEGIRFRGYSIPELIEKLPKAKGGSQPLPEGLFYLMLIGEIPTE
                     SDVERVTDVLQRKSHVPNHVFKLIDAMPANAHPMTMYVSGVMALQTESVFAKRYADGM
                     NKKDYWDAAFDDALTLLARLPRLAAYIYRKKYHNGDDITPDGMLDWSGNLAHMLGFPN
                     EKFKELMRLYMTIHADHEGGNVSAHTTHLVGSALSDPYLAYAAGMNGLAG"
BASE COUNT          480 a          437 c          491 g          444 t
ORIGIN      
        1 aagtcggaca gttcacaatc ggtgatcgac tgcctgctgg gggaagccaa taaattccat
       61 gtagacctca tgttgcattt tgctgtagaa aaaattgcgc acagcgaaaa aggctggaaa
      121 attgaagccg ccgacaaaag aagtctggaa gcagattttc tctgcatcgc ttgcggtggg
      181 tttcccaaac aggaaatgtt ccattggatt acaactgcaa cagggcatac catttttcct
      241 cccattcctt cgctttttac tttcaataca ccggggcacc ctatcaccaa actgatgggt
      301 gtggctgctg cagtacacat caaaattgcc gggctcaaat gggaatcggg tgggccgctg
      361 ctcatcacac attgggggct gagcggtcct gccgtactcc gcttgtcggc ttttgcggcc
      421 cgcgaccttc acgaacggca gtatgcatac cgggtgatca tcaattggct gcctgaattc
      481 aatgaagcat cgctgcgtga aaaagtgatg gcacaccggc aggcaaaggg ttcgcagaaa
      541 gttgtgaata cggaatgggt gacactgcct gagcggttgt ggcttttttt gctgggagag
      601 tgccagatag gagcagacct gcgttgggcc gatctgccgg cacagaaaca gaaccagttg
      661 atcaaacagc tgtgcggcta cgaattggag gcaaagggaa agacgacttt caaggacgag
      721 tttgttacag caggcggaat cgataccagc gaagtggacg cttccaccat gtcctcccgg
      781 aaagcacccg ggttgttttt tgcaggtgag atcctgaacg tggacgggat cacaggcgga
      841 tacaatttcc aacacgcctg gagttctggt ttcgcagcgg caaaagcgat tgctgatagc
      901 ctgtcatcat agcgattggt tatgaaaaat gaaaaatatc ttaatccaaa acattcaggt
      961 tttgtggctg ttatagcgtg ggcctaatca actacctttg cccacaagtt taaagccata
     1021 tttttttcat tgttaaacac acatgcaatg ggttatctga aagacaggtt caaggcgaaa
     1081 gcagacgttg cagccgcaga aatcaaggac attctgaaag atcacgggaa tcaaaagatt
     1141 ggagaagtaa cgctgtcgca gatttaccag ggcatgcgtg gcatgacagg tctggtgact
     1201 gaaacctccc ttttggatgc ccaggaaggc attcggttca ggggatactc aattcctgaa
     1261 ttaattgaaa aattacccaa ggccaaaggt ggctctcaac ccctgcccga aggtttgttt
     1321 tacctgatgc tgattggtga aattcccact gagtcggatg tggaaagggt gactgatgtt
     1381 ttgcagcgta agagccatgt gccgaaccac gtattcaaac tgattgatgc catgccggcc
     1441 aacgcccacc ccatgaccat gtatgtttcc ggggtgatgg cattgcaaac ggaaagtgtt
     1501 tttgccaaac gctacgccga tggcatgaac aaaaaggact actgggatgc cgcttttgat
     1561 gatgcgctta ccctgttggc ccgccttcct cgtttggctg cctatatcta ccgcaagaaa
     1621 taccacaacg gagacgacat tactccggac ggaatgctcg actggtctgg caacctggcg
     1681 catatgctcg gtttcccgaa tgaaaagttc aaggaactga tgcgtttgta tatgaccatc
     1741 catgccgacc acgaaggggg caatgtgagc gcccatacca cgcacctggt gggcagtgca
     1801 ctttcagatc cttatttggc ctatgctgcc ggtatgaacg gtttggcagg tc
//
LOCUS       DATIQF010000210         1986 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_291938,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000210 DATIQF010000000
VERSION     DATIQF010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291938"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(155..1864)
                     /locus_tag="VLL95_03305"
     CDS             complement(155..1864)
                     /locus_tag="VLL95_03305"
                     /inference="COORDINATES: protein motif:HMM:NF012481.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin domain-containing protein"
                     /protein_id="HSR37917.1"
                     /translation="MLAPAKLEAVQQLITQYSKEELLWISGYIAGIAADNPVAIANGL
                     PSQPVSSPTASQTITLLYATETGNSKKAATHTASKLKQQGIKAKLLAAEQYKPEQLLK
                     DTHLVIAISTQGEGEPPKVAKALFDFLQQANPNLSHLRYSVLALGSKSYPLFCQAGID
                     LDSLLKKAGATPFVPIALCDDDYEPVAEAWTLSLLDALQTRSLPAASVNTISVKTDSK
                     KIYQATVGSNLLLNDKGSNKQVQHLELDLPEEVLYNPGNAIGITPENEAADVAKIISL
                     LGLHPQDKVLHKQERYEVFELLLRKLSINYLTLGVIKKYAQLVQADIPDTRMDLYDLL
                     RIYPLPAEIPAQAVIDLLNPITPRLYTISSAPNAHPGQLHLTVALHAFDSNGATQHGF
                     GSGYVTSLKPGQQVAFFLHQQKNFQVPRSDRHLIMIGQGTGIAPFRSMIAERDATGAS
                     GKNWLLFWEENFLTDFYYQTEIQSWFETGSLAYVNLAFEKNRNQALKVQDLISREADR
                     LWQWLESGAYLLVSGEKEPMGKAVEQALLELVSAKKKVSMDEAANYLKQLSKEGRYAK
                     ELY"
BASE COUNT          380 a          470 c          567 g          569 t
ORIGIN      
        1 agatagtttc attgtttttg gtttttggtt tgaagttttg gttctgtctt catcaagtca
       61 acggcggttt tgccccttta tcacttcact ccttttatac tttgtattgt acacttccca
      121 cttcgtactt cgtacctcgt acctcgtaat tgcactaata cagttctttc gcatacctgc
      181 cttccttgct cagttgtttc aggtagttgg cggcttcgtc catgctcact ttctttttgg
      241 cgctgaccag ttccagcagg gcttgttcca ctgcttttcc catcggttct ttttcaccgc
      301 tcaccagcag gtaagcaccc gattccagcc attgccacag gcggtcggct tctctgctga
      361 taaggtcctg tactttcagc gcctggttcc ggttcttttc aaaagcgagg ttcacgtatg
      421 ccaggctgcc cgtttcaaac cagctttgta tttctgtttg gtagtagaaa tcggtgagga
      481 aattttcttc ccaaaacaac aaccagtttt tgcccgaagc gccggtggca tctctttcgg
      541 caatcatgct gcggaagggg gcaatgccgg tgccctgccc gatcataatg agatgacgat
      601 cggagcgggg gacctggaaa ttcttttgct ggtgcagaaa gaaagcaacc tgctggccgg
      661 gtttcaggct ggttacatag cccgaaccaa agccatgttg cgtggcacca ttgctgtcga
      721 aagcatgcag cgctacggtg aggtgcaact gcccggggtg ggcgttgggc gctgatgaaa
      781 tggtatacag ccttggcgta atggggttga gcagatcgat gactgcctgt gcgggtattt
      841 cggcgggcag gggataaatg cgcagcaggt cgtagaggtc catgcgggtg tcgggtatgt
      901 cggcctgcac cagttgcgca tattttttaa tgacgcccag cgtaaggtaa ttgatggaaa
      961 gcttgcgcaa cagcaattca aatacttcgt agcgctcctg cttgtgcaat actttgtcct
     1021 gcggatgcag gcccagcaag gaaatgatct ttgccacatc ggctgcttcg ttttcgggtg
     1081 tgatgccgat ggcgttgccg gggttgtaca gtacttcttc cggcaggtcc agttccaaat
     1141 gctgcacctg tttgttgctg cccttgtcgt tgagcaggag gttggagccc accgtagcct
     1201 ggtagatctt tttgctgtcg gttttaactg aaatggtatt gactgaagcc gccggcagcg
     1261 acctcgtttg caatgcatcg agcagcgaga gtgtccatgc ttccgctacg ggttcgtagt
     1321 catcgtcaca caaggcaatg gggacaaaag gcgtggcgcc ggcttttttc aaaagactgt
     1381 cgaggtcgat gcccgcctgg caaaacaaag gatatgactt gctgcccagt gccagcacac
     1441 tgtagcggag gtgcgacaag ttgggattgg cctgctgcag aaaatcgaag agggcttttg
     1501 ccaccttggg tggttctcct tcgccttgtg tgctgatggc gatgacgagg tgtgtgtctt
     1561 tcagcaattg ttccggcttg tattgttctg ctgccagcag tttggctttg atgccttgct
     1621 gtttcagttt cgacgcggta tgggtggctg cctttttgct gttgccggtt tcggtggcat
     1681 acagcagggt gatggtttgt gatgccgtgg ggcttgaaac cggctgtgat ggcagtccat
     1741 tcgcgatagc taccgggttg tcggcggcaa tgccggcaat gtatccactg atccacagca
     1801 gttcttcttt gctgtattgc gtgatgagtt gttgaacagc ttccagtttg gcaggggcta
     1861 acatggcagt gtagttttag gaaatggtaa tggtggttgg aatggccggc gccgttggta
     1921 cggcaggaat aaaccggatc ggatcaaaaa attcacgggc attttcagtc gactgcagcc
     1981 atgcat
//
LOCUS       DATIQF010000211         1866 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_33483, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000211 DATIQF010000000
VERSION     DATIQF010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33483"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..369
                     /locus_tag="VLL95_03310"
     CDS             <1..369
                     /locus_tag="VLL95_03310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37918.1"
                     /translation="GIDYTNKHNWYFNGSYLYLSSGSNAADIVSMQLLGTTNARNLLP
                     LRHTIFAMANRTINPLLTAGISLMYAPGGRNYLILFPTVNYSVGANTELSLFAQSLLG
                     NDNRYKTLGTALYARVKWSF"
     gene            complement(385..>1866)
                     /locus_tag="VLL95_03315"
     CDS             complement(385..>1866)
                     /locus_tag="VLL95_03315"
                     /inference="COORDINATES: protein motif:HMM:TIGR00641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HSR37919.1"
                     /translation="GNSGVSIATVDDAKKLYSGFDLCDPCTSVSMTINGPAPMLLAFF
                     MNAAIDQQCEKWITENNKWEAVKQYADEKYRHFPRPAYYNPLAPERLPEGNNGLGLQL
                     LGLSGDEVLPADVYAQCKQTALQQVRGTVQADILKEDQAQNTCIFSTEFALKLMGDVQ
                     EYFIQNKVRNFYSVSISGYHIAEAGANPITQLAFTLANGFTYVEYYLSRGMHIDDFAP
                     NLSFFFSNGMDPEYSVIGRVARRIWAKAMKLKYKGNDRSQKLKYHIQTSGRSLHAQEI
                     DFNDIRTTLQALYAIYDNCNSLHTNAYDEAITTPTEESVRRAMAIQLIINRELGSAKT
                     ENFIQGSFLIEELTDLVEEAVLAEFDRITERGGVLGAMERMYQRNKIQEESLHYEMLK
                     HTGELPIVGVNTFLNKQGSPTQIPGEVIRSTTEEKEQQIHNLQAFWKRNEARSQEMLQ
                     RLKQAAIQNGNLFEELMETVKYCSLGQITKALYEVGGQYRRNM"
BASE COUNT          410 a          488 c          449 g          519 t
ORIGIN      
        1 ggcattgact ataccaacaa acacaattgg tatttcaatg gttcctacct gtacctgtcg
       61 agtggaagta atgcggcaga tattgtcagc atgcaattgc tgggcaccac caacgccaga
      121 aaccttctcc ccttacggca tactattttt gccatggcca acaggaccat caatccattg
      181 ttgaccgccg gcatcagcct aatgtatgca ccgggtggcc gcaactatct tattctcttt
      241 ccaacagtta attacagtgt cggggccaac actgagcttt cactttttgc ccagtcgttg
      301 ctgggcaatg ataacaggta caaaaccctg ggcaccgctt tgtatgcccg ggtgaaatgg
      361 agtttctgag aggcaggcga atgcttacat gttcctgcga tactgcccgc ctacttcata
      421 caaggccttg gtgatctgtc ccagtgaaca atacttcacc gtttccatca gttcttcaaa
      481 caggttgccg ttttgaatgg ctgcctgttt caatcgctgc agcatttcct ggctgcgggc
      541 ttcattgcgc ttccagaagg cctgcaggtt atggatctgc tgttcctttt cttcagtggt
      601 actgcgaatc acttcacccg gaatttgagt agggctgccc tgcttattga ggaaggtatt
      661 caccccaacg atgggcaatt cgcctgtatg cttcagcatt tcgtaatgca ggctctcttc
      721 ctggatcttg ttgcgctgat acatgcgctc catggcacct aatacacctc ctctctccgt
      781 gatgcgatcg aattctgcca gtacagcttc ttccaccagg tcagtcagtt cttcaatcag
      841 gaaagatccc tgtatgaaat tctccgtttt ggcacttccc aattcacggt tgatgatcag
      901 ctgaatagcc attgccctgc gtacactttc ttcagtgggg gtggtaatgg cttcgtcgta
      961 agcgttggta tgaaggctgt tgcagttgtc gtaaatagca tacaatgcct gcagcgtggt
     1021 ccggatatcg ttgaaatcaa tttcctgcgc atgcaaggag cgacccgaag tctggatatg
     1081 gtacttcagc ttctggctac ggtcgttgcc tttgtatttc agcttcatgg ctttggccca
     1141 aatgcgacgg gccacgcggc caatcacact gtactcgggg tccatgccat tgctgaaaaa
     1201 gaaactgagg ttgggcgcaa aatcatcaat gtgcatgcca cggctgaggt agtactccac
     1261 gtaagtgaaa ccattggcca gcgtaaatgc cagctgggtg atggggttgg cacctgcttc
     1321 cgcaatatga tagccgctga tgctgacgct gtaaaaattg cgcaccttgt tctggatgaa
     1381 atattcctgt acatcaccca ttagcttcaa tgcaaattcg gtgctgaaga tgcaggtgtt
     1441 ttgtgcctgg tcttctttca ggatatcggc ctgcacagtg ccacgcacct gctgcaatgc
     1501 ggtctgcttg cattgtgcgt atacatcggc tggcagcact tcgtcgccac tgagtcccag
     1561 cagttgtaaa cccaaaccgt tgttgccttc aggcaatcgc tccggcgcca gtggattgta
     1621 gtatgcaggg cgaggaaaat gcctgtactt ttcatcggca tattgcttca cggcctccca
     1681 cttattattt tctgtgatcc atttctcaca ttgctgatca attgcagcat tcatgaaaaa
     1741 tgccagcagc atgggggccg gcccattgat ggtcatgctc acggaagtgc atggatcgca
     1801 gagatcgaaa ccgctgtaca gtttcttcgc atcatcgacc gttgcgatgc tcacgccgct
     1861 attacc
//
LOCUS       DATIQF010000212         1836 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_185710,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000212 DATIQF010000000
VERSION     DATIQF010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185710"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..568)
                     /locus_tag="VLL95_03320"
     CDS             complement(<1..568)
                     /locus_tag="VLL95_03320"
                     /inference="COORDINATES: protein motif:HMM:NF012509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase family protein"
                     /protein_id="HSR37920.1"
                     /translation="MNSMAAKAEALFAEAFQQKPLVVRSPGRINIIGEHTDYNEGFVL
                     PAAIDKAAYVAISLRDDDEIHLLAADLDDRFSMKVHDLQPVGGASWPNYILGAAAQFA
                     KRGVKLPGFNAVLTSDVPIGAGLSSSAAVECATVFALNELLQTHLDRITMVQMAQKAE
                     HEFAGVMCGIMDQFASMMGRKDHVIKLDC"
     gene            complement(721..1131)
                     /locus_tag="VLL95_03325"
     CDS             complement(721..1131)
                     /locus_tag="VLL95_03325"
                     /inference="COORDINATES: protein motif:HMM:NF013995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EVE domain-containing protein"
                     /protein_id="HSR37921.1"
                     /translation="MAYWLVKSEPFKYSWDQFVKDKQTFWDGVRNYAARNNLRAMKKG
                     DEVLFYHSNEGLEVVGIAKVAKEHYPDPTATEGDWSVVDLKPVKAIKKPVSLATIKAD
                     KRLANMQILKLGRLSVTAVTPEEWDIIMELGGMQ"
     gene            1360..>1836
                     /locus_tag="VLL95_03330"
     CDS             1360..>1836
                     /locus_tag="VLL95_03330"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HSR37922.1"
                     /translation="MKRINHLMTLAFACLSLTAATAQKGTKMVGGAEMYPSRNIVENA
                     VNSADHTTLVAAVKAAGLVETLQSAGPFTVVAPTNSAFNMLPKGTVETLLKPENKGTL
                     TAVLTYHVVAGKYDAKSILDLIKKNNGKATLTTVQGGTLTATTDGKTVMLKDEKGGM"
BASE COUNT          479 a          506 c          409 g          442 t
ORIGIN      
        1 ggcaatcgag tttgatgaca tgatccttcc tgcccatcat cgaagcgaac tggtccataa
       61 tgccacacat cacaccggca aattcatgct cggccttttg cgccatctgc accatcgtaa
      121 tcctgtccaa atgcgtttgc aacaattcat tcaaagcaaa tacggtggca cattctactg
      181 ccgctgaaga agacaggcct gcacctatcg gcacatcgct ggtcaatacc gcattaaagc
      241 ccggcaactt tactccccgc tttgcaaact gtgcggcagc gcccagtatg taattgggcc
      301 agctggcgcc gccaacaggc tggaggtcgt gcactttcat ggaaaacctg tcatccagat
      361 ccgcagcgag caaatggatc tcgtcatcat cgcggagcga aatggccaca taagcggctt
      421 tgtcaatggc agcgggcaat acaaagccct cattgtaatc ggtatgttca cctatgatgt
      481 tgatgcggcc cggggaacgc accaccaaag gcttttgctg aaacgcttct gcaaacaggg
      541 cttccgcctt agccgccata ctgttcatgt gtcatttgct ttggttcaat gaatgagact
      601 tcaattgaca caacgatttt acaggaaccc ggtgattatt cagctgatat gggaaaaaca
      661 tttttgtgac ccggacaaac gtttgccggt taagacgcga aatgcagcac accacccttt
      721 ctactgcatg ccgcccaatt ccataatgat gtcccactct tcgggcgtta cggcggtgac
      781 tgacaacctg cccagtttaa ggatctgcat attggcgagg cgtttgtcgg ctttgatggt
      841 ggcgaggctc accggttttt tgatggcctt taccggcttc aggtctacca cgctccaatc
      901 gccttcggta gcggtaggat cgggataatg ttcctttgcc actttggcga tgcctaccac
      961 ttcgaggcct tcattgctgt ggtaaaacaa cacttcatcg cccttcttca tggcacgcag
     1021 gttgttgcgg gccgcataat tgcgcacccc atcccaaaaa gtctgcttgt cttttacaaa
     1081 ctgatcccag ctgtatttga agggttctga ttttacgagc cagtatgcca taagtcgata
     1141 atgcgtttga taacaacagg attaaaagtg gccaaaatta ggggtaccgg catttgagaa
     1201 tgaaccggct tctccacacc ccggtagcat gcattaacaa tattttttct gttgggttca
     1261 atccggctgc gtttccagca gcgtaaatga tggcgttgtt tacatgtaac cgcaaccaca
     1321 ttcttttttc aatcatccat ttcaaaaaac aaaaacacta tgaaacgcat caatcacctg
     1381 atgacactgg ctttcgcatg cctcagcctt actgcagcca ccgcacaaaa aggaaccaaa
     1441 atggttggcg gcgccgaaat gtatccttcc aggaacattg tagaaaatgc cgtgaactct
     1501 gctgatcaca ctacactcgt tgccgctgta aaagctgccg gcctggtaga aacactgcaa
     1561 agcgccggcc ccttcactgt agttgctccc accaacagtg ccttcaacat gctgcccaaa
     1621 ggcacggtag aaacccttct gaaacctgaa aacaaaggca ccctgaccgc cgtgctcacc
     1681 taccatgtgg tagcaggtaa atacgatgcc aaatccattc ttgacctcat caaaaagaac
     1741 aatggcaaag ccacactaac caccgtgcaa ggcggcaccc tcactgccac cactgatggc
     1801 aaaaccgtaa tgctgaaaga tgaaaaaggc ggcatg
//
LOCUS       DATIQF010000213         2356 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_109684,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000213 DATIQF010000000
VERSION     DATIQF010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2356
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109684"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(352..993)
                     /locus_tag="VLL95_03335"
     CDS             complement(352..993)
                     /locus_tag="VLL95_03335"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSR37923.1"
                     /translation="MSRQSRIWKNWMMVFLGCQFFLWFPYYLTFFGLKITTTYHIFNS
                     FSVLWLLASSLSLFFFPTLLYPRLYEPPSNAEHKPTRKGALPPAVDIKTTQTMLEIED
                     WVNNHQPFLKPGYSIGDLSAEMQVPVYQISKSLNACTALGFVDYFNKRRIQYCKDMLD
                     KGEWSNLTLEAIALECGFFNRNSFTKAFQKFEGSTPSAYLQKAQRQSPERPLS"
     gene            complement(1798..>2356)
                     /locus_tag="VLL95_03340"
     CDS             complement(1798..>2356)
                     /locus_tag="VLL95_03340"
                     /inference="COORDINATES: protein motif:HMM:NF044806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37924.1"
                     /translation="ATEYAILNANYMRARLREHYPILYTGSNGTCAHEFIVDLRPFKN
                     TAGIEAEDVAKRLMDYGFHAPTMSFPVPGTITIEPTESEDKAELDRFCDALISIRQEI
                     KDIEEGRADKADNPLKNAPHTQAVALVEDWKHSYTRQQAVFPLPYVAQNKFWPSVSRI
                     NNTHGDRNLICTCEPIESYMGVATS"
BASE COUNT          652 a          498 c          589 g          617 t
ORIGIN      
        1 tatagtctgt cttcagggtc ttattcgccc atgctccatt cggaaattca acaagctcgt
       61 agggggtacc cataaacacc cctttcttgt caatcttcag ttcctgggct tcagccaggt
      121 ggggcaaaat agaaatgcca atgcccaaag caatcttgat aactttcata gcagcgtgga
      181 tttagtagag acaaaaaaaa tcctcaaacc tgagtggatg cagcgcactt tgcctctttt
      241 gtcacaaaag aggcaagaac aattgccctt gccacagtcc ttttatcctg gtttggcagt
      301 aaccatagga aatttcaggt agagatacct gccagttgca ttcggcagcc tttaagaaag
      361 ggggcgctcc ggggattgcc tttgggcttt ctgaagatag gccgaaggag tggagccttc
      421 aaatttttga aaagctttgg tgaaggagtt acggttgaaa aaaccacatt ccaaagcaat
      481 ggcttcgagg gtgaggtttg accattcccc cttgtccaac atgtctttac aatactgaat
      541 gcgccgtttg ttgaaataat caacaaaccc caaggctgtg caggcattca ggcttttgga
      601 tatttggtaa acgggcactt gcatttctgc tgataaatcg ccgatgctat agcccggttt
      661 caaaaaaggt tggtggttat tcacccaatc ttctatttcc agcatggttt gggtggtttt
      721 tatgtcgact gcagggggca aggctccttt tctggtgggt ttgtgttcgg cattagaagg
      781 aggttcgtac aacctggggt aaagcagggt tggaaaaaag aaaagggaaa ggctcgaagc
      841 caggagccat aaaacggaaa agctattaaa aatgtggtag gtagttgtga ttttcaatcc
      901 aaaaaaggta aggtagtaag gaaaccacag gaagaattgg cagcccagga acaccatcat
      961 ccagtttttc cagatcctgc tctgtcgcga catagtggtc ttaggtttta gccattgcat
     1021 tagcatcagc acctgggcta tccaatagcc gctaaacaga atagtgcgga attgagaatg
     1081 aaaacccggt ccgaaaaatt tgctttggct gaattgactg aggacattaa gatcggccag
     1141 gtcttttttt aagaggacca acttttccgc attggacatg gaaagtacat cccaaaaatc
     1201 aacaatgtag attgccagcg gtagggcatg gaggagatcg taccatttcc aatgcctatt
     1261 tcgggtataa aaagccacat gtaaaaaagg catgggtata aacgcaagcg caaaagcatt
     1321 tcctaacctg tacatgaaag gccaatggac tatgagacct gaaaccaaag agaagctgac
     1381 gaaaattccc agtgatattg ccaattgccc aatgccgagt ggttggttgg ccgggttggt
     1441 tttgatgccg aaatagaaaa tgacaatagc ggaaacaatg cctattacag cagctgccaa
     1501 atggaccaga gtgataagat caaagggtat ttccataaat gttataccag aggcaaaatt
     1561 gtagtacctg caatttatta tggattgaga tactaatagg tgcaaaaaat ggtaacggaa
     1621 taactgttga accttttttt tgttgaacct gcttttgcca gacagttcaa ttgccggcat
     1681 attcagtgaa ttacctgggt agaagaaaat gcgatcgata ggtagtgttc aagaacagca
     1741 aggcccggca aaacgtaccg ggccttggcg tatttggata gaggcagtta tgttctatta
     1801 tgaagtagcc acccccatgt acgattcaat gggttcgcag gtacagatca ggttgcggtc
     1861 gccatgcgta ttgttgatgc ggcttaccga aggccagaac ttgttctgcg ctacataagg
     1921 aagcgggaat actgcctgct gccttgtata gctgtgtttc caatcttcaa ccagcgctac
     1981 tgcctgtgta tgcggagcat ttttcaaagg attgtcggct ttgtctgccc ggccttcttc
     2041 aatgtccttt atttcctggc gaatggagat caacgcgtca cagaaacgat ccagttccgc
     2101 tttgtcttcg ctttcagtag gctcaatcgt gatggtgccc ggtaccggga aactcatggt
     2161 aggagcgtgg aagccatagt ccatcaggcg tttggccaca tcttccgctt caatgcccgc
     2221 agtgtttttg aacggccgca aatccacgat gaattcatgc gcacaggtgc cattgctgcc
     2281 agtgtagaga atcgggtaat gctcccgcag gcgggcacgc atgtagttgg cattcaggat
     2341 ggcatattca gtggcc
//
LOCUS       DATIQF010000214         3334 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_3166, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000214 DATIQF010000000
VERSION     DATIQF010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3334
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3166"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..403)
                     /gene="rpsB"
                     /locus_tag="VLL95_03345"
     CDS             complement(<1..403)
                     /gene="rpsB"
                     /locus_tag="VLL95_03345"
                     /inference="COORDINATES: protein motif:HMM:TIGR01011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HSR37925.1"
                     /translation="MEQNTSLQQQLLDAGVHFGHLKKKWNPKMLPYIFAEKKGIHIID
                     LNKTVEGLQEAAAAMKQIAKSGKKIMFVATKKQAKEIVTECAQRVNMPYVTERWLGGM
                     LTNFNTVRKSVKKMQSIEKMLNDGTLESITKK"
     gene            complement(518..907)
                     /gene="rpsI"
                     /locus_tag="VLL95_03350"
     CDS             complement(518..907)
                     /gene="rpsI"
                     /locus_tag="VLL95_03350"
                     /inference="COORDINATES: protein motif:HMM:NF001099.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HSR37926.1"
                     /translation="MEKQKNAIGRRKEAVTRVFLSKGSGNITINDKDYKVYFPLVYLQ
                     NQVELPLKTVEALDKFDVKINAAGGGIKGQAEAAKLGIARALIELNAELRPALKAAGL
                     LTRDPRSVERKKPGKKKARRSFQFSKR"
     gene            complement(967..1410)
                     /gene="rplM"
                     /locus_tag="VLL95_03355"
     CDS             complement(967..1410)
                     /gene="rplM"
                     /locus_tag="VLL95_03355"
                     /inference="COORDINATES: protein motif:HMM:TIGR01066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HSR37927.1"
                     /translation="MSKLHFTTKHANAATVQRNWYVVDGTNQTVGRMSARIAAVLRGK
                     HKASYTPHVDTGDYVIVINADKVVFTGNKFEDKLYQNFSGYPGGLKEEAAKDLLKRRP
                     EVIMERAVKGMLPKNRLGRKMYKKLFVYAGAEHPHTAQQPKELKF"
     gene            complement(1679..1870)
                     /locus_tag="VLL95_03360"
     CDS             complement(1679..1870)
                     /locus_tag="VLL95_03360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37928.1"
                     /translation="MISFLLWLLLFLLCWPLALLALVLYPIVWLLSLPFRLAGIAVDS
                     VFQLLKALLGLPARVLNRI"
     gene            1992..3023
                     /locus_tag="VLL95_03365"
     CDS             1992..3023
                     /locus_tag="VLL95_03365"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSR37929.1"
                     /translation="MRKFYRILLLVIIGLSILYLLGPKPVTPSYTDALPAVPPGAAAL
                     EQYVQANESVHRLKPNNEARIVWYNDTLRQPTEYAIVYLHGFSASQEEGNPTHRDIAR
                     QFGANLYLARLYDHGIDTSDALVNYSPEGLWESARQAYAIGKQLGKKVILMGTSTGGS
                     VALQLAATYPDIAGLVLISPNIAINDPNAWMLNNHWGKQIARLVIGSDYRTVSDSRPI
                     YQQYWNYTYRIEAIVVLQEYLETAMVPATFNKVLQPVLTLAYYKNEQEQDPVVKISAM
                     RDMFSALGTPAGQKKFVEMKGTGDHVQGSPIKSKDVEGVKKAIADFLQTVMQIAPADS
                     TVSNPVSPS"
     gene            3020..>3334
                     /locus_tag="VLL95_03370"
     CDS             3020..>3334
                     /locus_tag="VLL95_03370"
                     /inference="COORDINATES: protein motif:HMM:NF013755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37930.1"
                     /translation="MNAGGPHTIASPVTRYIADAAELQHCVDILRQSTVFAFDLEFDR
                     DRYTYGFDLCLMQVATPEVCFLIDPLSKINLQPLFEVFTLPAIRKLVHCPGEDLRLLH
                     SLQ"
BASE COUNT          740 a          903 c          872 g          819 t
ORIGIN      
        1 cttttttggt gatgctttcg agggtaccat cgttcagcat tttttcgatg ctctgcattt
       61 tcttcacgct cttgcgaacg gtgttgaagt tggtaagcat gccacccagc cagcgctcgg
      121 taacataagg catgttcacc cgctgggcgc attcggtcac gatttccttg gcttgctttt
      181 tggtagccac gaacatgatc tttttgccgc ttttggcgat ctgcttcatg gcagctgcag
      241 cttcctgcag gccttccacg gtcttgttga gatcgatgat gtgaatgcct ttcttttcag
      301 caaagatgta aggcaacatc ttggggttcc acttcttctt aaggtgacca aagtgtacac
      361 cggcatcgag aagctgctgc tggagggaag tattttgttc catttgaatg acttgtttgt
      421 tgtttgtagt tttttgtttg ttgttggttt gtgccgtttg gataaccaaa aacaacaaaa
      481 ccctgtctgc cgacaggcag gaaaaaccga aacgggatta acgtttagag aactggaagc
      541 tgcgacgtgc tttcttctta ccgggcttct tccgttcaac cgaacggggg tcgcgggtaa
      601 gcaaaccagc cgccttgagg gcaggacgca gttcagcatt caattcgatg agtgcacggg
      661 caatgcccag cttggctgct tcggcctggc ctttgatacc accaccggcc gcgttgatct
      721 tcacatcaaa cttgtcgagg gcttcaacgg tcttcagggg cagttccacc tggttttgca
      781 ggtataccag tgggaagtac accttgtaat ctttgtcgtt aatagtaatg ttgccgctac
      841 ccttgctcag aaacacacgg gtaaccgctt ctttacgacg accaattgca tttttttgtt
      901 tttccatttt gtatttgctt ttagctgtct gcccggcgca ggtgcctcgg gcatgaagcg
      961 gtcagtttag aatttgagtt ctttgggttg ctgtgcagta tgcggatgct cggcaccagc
     1021 gtatacaaac aacttcttgt acattttgcg gcccaggcga ttcttgggca gcatgccttt
     1081 cacggcacgc tccatgatca cttcggggcg acgcttcagg aggtctttgg ctgcttcttc
     1141 cttcagacca ccggggtagc cgctgaagtt ctggtacagc ttgtcttcaa acttgttgcc
     1201 ggtgaatacc accttgtcgg cattgataac gatcacatag tcgccagtgt ccacatgggg
     1261 cgtatagctg gctttgtgct tgccccgcag tacggctgcg atacgggcac tcatgcgacc
     1321 cacggtttga ttggtaccgt ctacaacgta ccagttacgc tgcacggtag ccgcattcgc
     1381 atgcttggtt gtaaaatgca atttgctcat aacttgattt taataggcag tgccgccatc
     1441 ccgtgcacta cccggtttat aaattgggct gcaaaagtag gcggggtgga atcatttggc
     1501 caaaagaatg agcgttaatt tttcattgct cctttgcaac caattgattt tcaataaaaa
     1561 tttttacaag aaattttagt ggctacggaa aagcctgcta tcaaagggtt tgcgcatgcc
     1621 cattcgccgg cctccccatc cggcaaggct ttgcagccaa ccgccttttg cggtagggct
     1681 agatcctgtt gagcacccgg gccggtaaac ccagcagggc tttcagtagt tgaaaaacac
     1741 tgtcgaccgc gatgccggcc agcctgaaag gcaggctcag gagccacacg atgggataga
     1801 gcaccagtgc cagcaaggcc agcggccagc agagcaggaa gagcaaaagc caaagcagga
     1861 aactgatcat gggttaaaat tacaacctgc gctgaccagc ggtggaggcc tcttgataag
     1921 cggtacgtaa aacatggtag cggccctaaa ggctggtctc cttaaattgt gcccgttatc
     1981 aacacagtgg catgcgcaag ttttacagga ttctgctttt ggtgatcata ggattgagta
     2041 tcctgtacct gttgggcccc aaacccgtga ccccatccta caccgacgca ctgcctgccg
     2101 tgccaccggg agcagcggcc ctggaacaat atgtgcaggc caacgaatcg gtgcaccggc
     2161 tgaagcccaa caatgaagcc cggatcgtat ggtacaacga tacgcttagg cagcccacgg
     2221 agtatgccat tgtttacctg cacggcttca gtgccagcca ggaagaaggc aaccccacgc
     2281 accgcgatat cgcccggcag tttggcgcca acctgtacct ggcccgcctg tacgaccatg
     2341 gcatcgacac cagtgatgcg ctggtgaact acagccccga aggcttgtgg gaaagtgccc
     2401 ggcaagccta cgccattgga aagcagctgg gcaaaaaggt gatcctgatg ggtacgagca
     2461 ccggcggctc ggtggccctg cagctggctg ccacctatcc cgacatcgcc ggcctggtac
     2521 tcatttcgcc caatatcgcc atcaacgatc ccaatgcgtg gatgctcaac aaccactggg
     2581 gaaagcaaat agcccggctg gtgatcggca gtgattaccg caccgtgagc gacagccgtc
     2641 ccatttacca gcaatactgg aactatactt accgcatcga agccatcgtg gtcttgcagg
     2701 aatacctgga aacggccatg gtgccggcca ccttcaacaa ggtgctgcag ccggtgctta
     2761 cgctggctta ttacaagaac gagcaggagc aggacccggt agtgaaaatt tctgccatgc
     2821 gtgacatgtt ttcggccctt ggcaccccgg caggccagaa gaagttcgtt gagatgaaag
     2881 gcaccggcga tcatgtgcag ggctctccca tcaaatccaa agacgtggaa ggggtgaaaa
     2941 aggccatcgc tgatttcctt caaaccgtga tgcaaatagc accggccgac agcactgtat
     3001 ccaaccctgt atccccttca tgaacgccgg cggaccccat accattgcgt cacccgtgac
     3061 ccgctacatc gctgatgccg ccgaactgca gcattgcgtt gatatcctgc ggcagagcac
     3121 ggtgtttgcc tttgatcttg aatttgacag ggaccgttac acctatggct tcgacctctg
     3181 cctgatgcag gtggccaccc cggaggtttg cttcctcatc gatccgttga gcaaaatcaa
     3241 cctgcagccc ctgttcgagg tgtttaccct gccggctatc cgcaaattgg tgcattgccc
     3301 gggcgaagac cttcgcctgc tgcattccct gcaa
//
LOCUS       DATIQF010000215         6980 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_94332, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000215 DATIQF010000000
VERSION     DATIQF010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6980
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94332"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1231)
                     /locus_tag="VLL95_03375"
     CDS             complement(<1..1231)
                     /locus_tag="VLL95_03375"
                     /inference="COORDINATES: protein motif:HMM:TIGR00797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HSR37931.1"
                     /translation="MSTIANHSLQLQTSNRQILSIALPIAASILVPQINFITNNIFLG
                     GLGEVPLAVAGITGVYYLMFAVVGHGLNNGLQALISRRAGEDRVGEIGELFSQGVFIA
                     LTFSAMAILFHFVVTPMLLKVALADQQKYEMAVSFLRIRMWGLPFLYLYQMRNALLVG
                     TNNSKYLIIGTLAETVTNIGMDYGLIYGNFGLPKMGFNGAAVASIVAEATGLLVVFAV
                     IYFKGIGRELQLHKHWHMNWKNAKLILVQSSPLILQFGISIASWEYFYILIEHYGTRD
                     LAVSNAMRNVFGLFGCFAWAFAATSNTMVSNIIGQHKKSEVIPLVWKITRLSLMFVIV
                     PCLLVNLFPHAFLSVFGQDESFIQYAIPVLRVVSTALLLMAFGTVWLNAITGTGNTKV
                     NLGIEVLTIVLYVVYVTL"
     gene            complement(1337..2230)
                     /locus_tag="VLL95_03380"
     CDS             complement(1337..2230)
                     /locus_tag="VLL95_03380"
                     /EC_number="1.1.1.157"
                     /inference="COORDINATES: protein motif:HMM:NF004474.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyryl-CoA dehydrogenase"
                     /protein_id="HSR37932.1"
                     /translation="MFNKVAVIGAGTMGNGIAHVFAQYGHQVNLVDVSETALQKALAT
                     ISKNLDRQVAKGVLTEGQKETTLANITAHSLLEAGVQDVQLVVEAATENTALKLKIFQ
                     QLDEAAPAHCILATNTSSISITKIAAVTKRPEKVIGMHFMNPVPVMKLVEIINGYATD
                     AAVTEQIVSLSKTLGKVPCVVNDYPGFIANRILMPMINEAIISLYEGVAGVEEIDNIM
                     KLGMAHPMGPLQLADFIGLDVCLSILRVLHDGFGNPKYAPCPLLVNMVTAGKLGAKSG
                     EGFYTYTPGSKDLLVSKQFAK"
     gene            complement(2360..3004)
                     /locus_tag="VLL95_03385"
     CDS             complement(2360..3004)
                     /locus_tag="VLL95_03385"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HSR37933.1"
                     /translation="MTRLRHLSVFLFILLASVGKLQAQQQASNNVVQLYGIVMTADSL
                     RGLDGVSVSVKGKGRGTITNWQGVFSIAVLKGDVVEFTFVGYKAKTVTIPKNLDGNEY
                     SVIQLMISDTNYLPGTVIRAKPTRAQFERDFVNTPVPADEYELARQNTDEQKRAALMT
                     SIPSDGKEAINYTLRQKANTAYYTGQLPPQNIMNPFAWNEFIKAWKRGDFKKKK"
     gene            3123..4220
                     /locus_tag="VLL95_03390"
     CDS             3123..4220
                     /locus_tag="VLL95_03390"
                     /inference="COORDINATES: protein motif:HMM:NF022077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140663 - ATP-dependent FeS chaperone
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HSR37934.1"
                     /translation="MTEQDILKALSNVQEPDLGKDLVTLNMVKDIAIDGNKVSFTIVL
                     TTPACPMKDLMGRASENAIKLLVNKEAEVQVNFTANTSSNRKDEGNQLPGVKNIIAVV
                     SGKGGVGKSTVSANLALALAAGGARVGLMDADIYGPSVPIMFGVSGERPLMKDAGNGK
                     GMIVPLEKFGIKLMSIGLLVDDKNAVVWRGPMASSAIRQFITDVDWGELDYLVIDMPP
                     GTGDIHLTMVQTVPVTGVVVVTTPQAVALADAKKGIAMFGQAQIKVPIIGLVENMSWF
                     TPAELPENKYYLFGKEGGKKLAEEYDLTFLGQIPLVQSIREGGDEGIPALVGNDTNTK
                     QAFADFAARTVRSIAMRNANMAPTAVVEMVS"
     gene            4366..5226
                     /gene="pyrF"
                     /locus_tag="VLL95_03395"
     CDS             4366..5226
                     /gene="pyrF"
                     /locus_tag="VLL95_03395"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:TIGR02127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HSR37935.1"
                     /translation="MNRAFLVNEIVSKQTYLCVGLDTDETKLPQHLRGQKDAVLQFNK
                     AIIDATKDYCVSYKINTAFYEAMGSRGWEIMEETFAYIPTTHFTIADAKRGDIGNTSH
                     QYARAFFEHLKVDAITVAPYMGEDSVRPFLEYEDKWTIVLGLTSNKGSDDFQRLALVR
                     KQEGLGLVPNIVSGERSELLYEKVLETVASWGTPDNLMFVAGATQASEFSTIRSIVPD
                     HFLLVPGVGAQGGSLADVSKYGLNAECGLLVNASRAVIFASSGEDFAEAAAAVAKSYQ
                     QEMASFFSMP"
     gene            complement(5241..5852)
                     /locus_tag="VLL95_03400"
     CDS             complement(5241..5852)
                     /locus_tag="VLL95_03400"
                     /inference="COORDINATES: protein motif:HMM:NF017939.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-(ms[2]io[6]A)-hydroxylase"
                     /protein_id="HSR37936.1"
                     /translation="MSEESVFQKNILGLQLPTDPRWVNLAEMSLEDILTDHAYCEQKA
                     AVSCMSLIQRYSDKDELVDELSPIVTEEWGHFRLVLHEIRKRGLALGKQRKDEYVNAL
                     LAFEVKGGKEEDRLLDKLLICALIEARSCERFKRLSEGLDDEYLCQFYRRFMESEAGH
                     YRTFIDLARAYIPEEKVWKRWQEWLDYEAGIMLSLTPRGDRMH"
     gene            5964..>6980
                     /locus_tag="VLL95_03405"
     CDS             5964..>6980
                     /locus_tag="VLL95_03405"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0017000 - antibiotic biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HSR37937.1"
                     /translation="MRIIPLVISAAVSVALVVALNTKIGPAPPMGKMLSPSHGFWQNA
                     EPVNASFSLNINAGSLENPAEVYLDERLVPHVFAQNETDAYFVQGYLHAKFRLWQMQF
                     QALAAAGRLCEVLGEKVGENSVLEAHDRKFRRMGMMLAAENSLTAMEAVPEDKAHMEA
                     YAAGVNKYIDELSPAQYPVEFKLLDYQPERWTPLHSALFLKYMSYDLAADLDDFEATN
                     LRHHLGDSLYDKVFPILPDSLDPIAPKGTVYNIVNSRMPVAPANLDSLYASQPALAFE
                     SNKPDPDNGSNNWVVGGMKTASGRPILCNDPHLGLNLPSLWFEIQIITPEYNVYGVSF
                     PGAPS"
BASE COUNT         1716 a         1775 c         1798 g         1691 t
ORIGIN      
        1 ccagcgttac gtacactaca tacaaaacaa tggtcagcac ctcaatgccc aggttgacct
       61 tggtattgcc ggtaccggta atggcattca gccacacggt tccaaacgcc atgagcaaca
      121 gcgcagtgct taccacacgc agcacaggga tggcgtattg aatgaatgat tcatcctgcc
      181 cgaatacaga gagaaaggca tggggaaaaa gattcaccag caggcagggc acaatcacaa
      241 acatcagact cagccttgtg atcttccaga ccagcgggat gacttccgat tttttatgct
      301 gtccaatgat gttgctcacc atggtgttgc tggtagccgc aaatgcccac gcaaagcagc
      361 caaacaggcc aaacacattg cgcatggcat tgctcacggc caggtcgcgg gtgccatagt
      421 gttcaatcag gatgtagaaa tactcccaac tcgcaatgct gatgccaaat tgcaaaatga
      481 gtggcgatga ttgcaccagt atcagcttcg catttttcca attcatgtgc cagtgcttgt
      541 gcagttgcaa ctcacggcca atgcctttga aataaatgac cgcaaatact accagcaggc
      601 cggtggcttc ggccacaatg gaggccacgg ctgctccgtt gaatcccatt ttgggaagtc
      661 cgaaattccc gtagatcagt ccatagtcca tgccaatatt ggtgacggtt tctgccagcg
      721 taccgatgat gaggtatttg ctgttgttgg tgcccaccaa cagggcattg cgcatttgat
      781 acaagtacaa aaagggaagc ccccacatgc ggatgcgcaa aaaactgacc gccatctcgt
      841 atttctgttg gtcggccaag gctactttca gcagcatcgg cgtcacaaca aaatgaaata
      901 gaatggccat tgctgaaaac gtcaatgcaa tgaaaactcc ctggctgaag agttcaccga
      961 tttctcccac ccggtcttca ccggcccttc tcgaaatgag cgcctgcaag ccattgttca
     1021 ggccatgccc caccaccgcg aacatgagat aatatacacc tgtgatgccc gccaccgcca
     1081 gcggcacttc acccaacccg ccgagaaaaa tgttgttggt aatgaaattg atttgcggca
     1141 ccagtatgga ggctgctatg ggcaacgcaa tgctcaggat ttgccggttg ctggtttgca
     1201 gttggaggga gtgattggca atggtgctca tacaaggcgc taaagatcaa ataaaaaagg
     1261 cacagcttgc tgtgcctggt tggagaagag gatgaacgga aaaaatctcc ggtgatgatt
     1321 ttacaggggg taatgcctat ttcgcaaact gcttgctcac tagcaggtcc ttgctgccgg
     1381 gcgtataggt gtagaatccc tcaccactct tggcgcccag tttgccggcg gtcaccatat
     1441 tcaccagcag cgggcagggg gcatatttcg ggttgccaaa tccgtcgtgc aatacccgca
     1501 ggatgctcag gcatacatcg aggccaatga aatcggccag ttgcagtggg cccatgggat
     1561 gtgccatgcc cagtttcatg atgttgtcaa tttcctctac gccggccacg ccttcataaa
     1621 ggctgatgat ggcttcgttg atcatgggca tcaggatgcg gttggcaatg aatcccgggt
     1681 agtcgtttac cacgcagggc actttgccca gtgttttgct caggctgacg atctgttcag
     1741 ttaccgcggc atcagtggca tacccgttga tgatctctac cagcttcatt accggcaccg
     1801 ggttcatgaa gtgcatgcca atcactttct ccggcctttt ggtaaccgca gcaatcttcg
     1861 tgatgctgat ggaagaagta ttggtggcca ggatgcaatg agcgggtgcc gcttcatcca
     1921 gttgttgaaa tattttcagt ttcagggccg tgttttcagt ggcagcttcc actaccagct
     1981 gcacatcctg tacacctgct tccagcaacg aatgggctgt aatgttggca agcgtagttt
     2041 ctttctgtcc ttcggtcagt acgcctttgg ctacctggcg gtcgaggttt ttggaaatgg
     2101 tggccaacgc cttttgcagc gcggtttcac tcacatctac caggtttacc tggtggccat
     2161 attgtgcaaa aacgtgggcg atgccattgc ccatggtacc agcgccaatc acggcaactt
     2221 tattaaacat agcaagcaat ttgattaggc cgcaaaagta gcatttgaga agggaagaat
     2281 accgggcaga ttcatgggcc tccaaacaaa aatgcgaaac cccggaaggc ttcgcatttg
     2341 gtatgcataa acgcagcaat tattttttct tcttgaaatc gccccgcttc catgccttga
     2401 tgaattcatt ccaggcaaag gggttcatga tattttgcgg aggcaactgg ccggtatagt
     2461 aggctgtatt ggccttttgg cgcagggtat aattaatggc ttctttgcca tcgctgggaa
     2521 tgcttgtcat caacgctgcc cttttctgct catccgtatt ctggcgggcc aactcatatt
     2581 cgtctgccgg tacaggagtg tttacaaagt cacgttcaaa ttgtgcccgg gtaggcttag
     2641 ccctgatgac cgtacccggc aaataattgg tatcgctgat catcagctgt attacactgt
     2701 attcattgcc atccaggttt ttaggaatgg tcacagtttt ggctttgtag cctacaaatg
     2761 tgaattccac cacatcgcct ttgagtaccg caatgctgaa aacaccctgc cagttggtga
     2821 tggtacccct gcctttccct tttacggaaa cgcttacacc atccaatcca cgcaggctgt
     2881 cagcagtcat cacaatacca tacagttgca ctacattatt actggcctgc tgctgggctt
     2941 gcaatttgcc gacgctggcc agcaaaatga acagaaaaac agataaatgc cggagacgcg
     3001 tcatgctaat gtttgaaagt ggacgaaaat accggaattg gtaatatcga tcaccaacaa
     3061 attaagatgg cgcttggtta tttttgcacg gctcaaaagg agctttaaca aaaacttgga
     3121 aaatgacgga acaggatatt ttgaaggcgt tgagtaatgt gcaggaaccc gatttgggca
     3181 aagacctggt gacgctgaac atggtgaaag acattgcaat tgatggcaat aaggtatcat
     3241 ttaccatcgt gttgaccacg cctgcctgcc ccatgaaaga cctgatggga agggccagtg
     3301 aaaatgccat caaactgctg gtaaacaaag aggcggaagt gcaggtgaac ttcacggcca
     3361 atacttccag caaccgcaag gatgaaggca atcaactgcc gggtgtgaaa aacatcattg
     3421 ccgtagtgag cggaaaaggc ggcgttggaa agagcaccgt gtcggccaac ctggcgctgg
     3481 cattggcagc aggtggcgcc cgggtgggcc tgatggatgc cgacatttac ggcccatctg
     3541 ttcccatcat gtttggggtg agtggcgaaa gaccgttgat gaaagatgcg ggcaatggca
     3601 aaggcatgat cgtgccgttg gagaaattcg gcatcaaact catgagcatc ggcctgttgg
     3661 tagatgataa gaatgccgtg gtatggcgtg gccccatggc cagcagcgcc atccgacagt
     3721 tcattaccga cgtggactgg ggcgaactcg attacctggt gattgacatg cctccgggca
     3781 caggtgatat ccacctcacc atggtgcaga ccgtgccggt aaccggcgtg gtggtggtaa
     3841 ctactccgca ggcagtagca ctggccgacg ctaaaaaagg catcgccatg tttggacagg
     3901 cacagatcaa agtgcccatc attggcctgg tggaaaacat gagctggttt acgcctgccg
     3961 aactgcctga aaacaaatac tacctgtttg gaaaagaagg cggcaaaaaa ctggcggaag
     4021 aatacgacct caccttcctt ggtcaaattc ccttggtgca aagcattcgg gaaggtggcg
     4081 atgaaggcat cccggcactg gtaggaaatg ataccaatac caaacaagcc tttgctgatt
     4141 ttgcggcccg caccgtgcgg agcattgcga tgcgcaatgc caacatggcg cccactgcgg
     4201 tggtggaaat ggtgtcgtaa ttcctttctt ccctgcaata agatcattcc aaagccggtt
     4261 gccttgtagc cggctttttt tatggccctt caataagatt tgcctattgt gccagtatgc
     4321 atttccttcg cggccagtat tgctgataca tcaaattgcc acccgatgaa cagagcattc
     4381 ttagtcaatg aaattgtgag caaacagact tacctgtgtg tgggtcttga taccgatgag
     4441 accaaattgc cgcagcattt gcgtgggcaa aaagatgcag tactgcagtt caacaaagcc
     4501 atcattgacg ctacgaaaga ttactgcgtt tcctataaga tcaacaccgc gttttacgaa
     4561 gccatgggca gccgtggatg ggagatcatg gaagagactt ttgcctacat tccaaccacc
     4621 cattttacca tagccgatgc caagcgggga gatatcggca acacatcgca ccagtatgcc
     4681 cgtgcatttt tcgaacacct gaaagtggat gccattacgg tagcgcctta catgggcgaa
     4741 gacagtgtgc ggccgttcct ggagtatgaa gacaagtgga cgattgtttt gggccttacc
     4801 agcaacaaag gcagcgatga ttttcagcga ctggcgttgg tgcgcaaaca ggaaggcttg
     4861 ggattggtgc ccaatattgt gagtggcgaa cgcagtgaat tgttgtatga aaaagtgctg
     4921 gaaaccgtgg catcctgggg tacgcccgac aacctcatgt ttgttgccgg tgccacacag
     4981 gcatcagaat tcagcaccat ccgcagcatt gtgcccgatc attttctgct ggtgcccggt
     5041 gtaggagcgc aggggggcag cctggccgat gtatcaaagt acgggttgaa tgccgaatgc
     5101 ggtttgctgg tgaacgccag cagggccgtc atctttgcat catccggcga agattttgca
     5161 gaggccgctg ctgcagtcgc gaaatcatac cagcaggaaa tggcatcctt tttctcaatg
     5221 ccttagagca ttcagacctt ttagtgcatt cgatcgccgc ggggcgttag cgacagcatg
     5281 atgccggctt cgtaatccag ccattcctgc caacgcttcc aaactttttc ttcagggata
     5341 taagcccgtg ccaggtcgat aaaggtgcgg taatgcccgg cttcgctttc catgaagcgg
     5401 cggtaaaact ggcagaggta ttcatcatcc aacccttcgc tcaatcgctt gaagcgttcg
     5461 caactgcggg cttcgatcag cgcacagatg agcaacttgt ccagcaagcg atcttcttcc
     5521 ttgccaccct tcacttcaaa tgctaaaagc gcattcacat attcatcctt gcgctgtttg
     5581 cccaaggcca gtccgcgttt gcgtatttcg tgcagcacca gcctgaagtg gccccattct
     5641 tcggttacga tgggcgagag ttcatctacc aattcatctt tgtcgctgta gcgttgtatg
     5701 aggctcatgc aacttaccgc tgccttttgt tcgcagtaag catggtctgt caggatgtcc
     5761 tccagcgaca tttcagccag gttcacccac ctgggatcgg taggcaattg aaggcccagg
     5821 atattctttt gaaaaacgct ttcctcactc atggctgcaa atgtagccgc tgccgtgtat
     5881 tgaatttttc cccgtagaag tgcaggctgg ccttccgtat cgttttgtcc ttattttcac
     5941 cccattctaa ttccgattgc tctatgcgca tcattccatt agtcataagt gcggctgtat
     6001 cggttgcatt agtggtagca ttgaacacca aaattggccc tgcgccaccc atgggcaaaa
     6061 tgttgagtcc atcgcatggc ttttggcaaa atgccgaacc cgtgaacgca tcgttttcac
     6121 tcaacatcaa tgccgggtcg ctggagaatc ctgcagaggt atacctggat gagcggttgg
     6181 tgccgcatgt gtttgcgcaa aacgagacag atgcctattt cgtacaagga tacctgcacg
     6241 ccaagttcag gttgtggcaa atgcagttcc aggcactggc agcagcaggc aggctgtgcg
     6301 aagtactcgg agagaaagtg ggagagaaca gcgtactcga agcacacgac cgcaagttca
     6361 ggcgcatggg catgatgctg gcggctgaaa actcactcac agccatggag gcggtgccgg
     6421 aagacaaggc acacatggaa gcttatgctg ccggggtaaa taaatacatc gacgagctgt
     6481 ctccagcaca atacccggtg gagttcaaac tgctcgacta ccagccggaa agatggaccc
     6541 ctttgcactc cgcacttttc ctcaagtaca tgagctacga ccttgcggcc gatttggacg
     6601 actttgaagc caccaatttg cgtcatcacc tcggtgattc tttgtacgac aaagtcttcc
     6661 ccattctgcc ggattcgctg gatcccattg cccccaaagg cacggtttac aacattgtga
     6721 attccaggat gccggtggcg cctgccaacc ttgattcatt gtatgcatcg cagccggcac
     6781 tcgcttttga aagcaacaag cccgatcctg ataatggaag caacaactgg gtggtgggtg
     6841 gcatgaagac tgccagcggt cgtcccattt tgtgcaacga tccgcacctc gggctgaacc
     6901 ttccttcttt gtggtttgag attcaaatca tcacgcctga gtacaacgtt tacggcgtca
     6961 gtttccccgg cgctccttcg
//
LOCUS       DATIQF010000216         2694 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_140175,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000216 DATIQF010000000
VERSION     DATIQF010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2694
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140175"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1096)
                     /locus_tag="VLL95_03410"
     CDS             complement(<1..1096)
                     /locus_tag="VLL95_03410"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HSR37938.1"
                     /translation="MATFDTAHVKNIALLGHAGSGKTTLAECMLFEAGLINRRGTVRE
                     GNTVSDYHELERERGNSIFSSLLHTTWRGYKINIIDTPGYDDFVGEVISALRVADTGV
                     MLLNATAGVEVGTDIVWDYTEQFKTPMIFAVNKLDHENADFHRTLAEAKSHFGSNVVA
                     VQYPVNAGTGFNQVIDVLNMVMYEYGKDGGKPEKKPIPDSERATADEMHRELVEAIAS
                     NDESLMEKYFEQGELNEDEMKEGLHKAMIKHDIFPLFCISAEKNMGSGRLMGFIDNVC
                     PSANEMPPQKTKAGGTLPCETNGPACIFVFKTISEPHVGELSLFKVYSGTVKSGMELV
                     NETTGVSEKLNQLLLVEGQNRTTVNELVAGD"
     gene            complement(1292..1654)
                     /locus_tag="VLL95_03415"
     CDS             complement(1292..1654)
                     /locus_tag="VLL95_03415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37939.1"
                     /translation="MVTVAEHKALLAECDQWREHLRLAKDDIIHLRNELYVAAAGKTD
                     HDFLKEVEHYHNQFHIQLINIHDLKHAIKHHVAEAEHHPNFGHRIPHHNLELQYKKLL
                     EDIEQLKTDFHRFIGEAG"
     gene            1808..>2694
                     /locus_tag="VLL95_03420"
     CDS             1808..>2694
                     /locus_tag="VLL95_03420"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSR37940.1"
                     /translation="MVSPLFRFPVCILVFLISLSSFTPTAAQPLVADSARVARWMTTL
                     SAPGMYGRGYVKGGLDSAAAFIVRELQTLGLQANRLPFKMPVNTFPHKVQLAINGRKL
                     LPGKDFLVGPESVSFHGAASLEQADSNVWVDARRKIIFETADKLSWSVATEQAAFTRF
                     TVAKRAWPSALRKVEAEVEAVYDSSFTASNILAVIPGTRRPDSMLVFTAHYDHLGMMG
                     ANTTFAGANDNASGTALLLALAAYYATHPAAYSVAFLFFAGEEAGLYGSKVFTDQPVF
                     PLDKVRFLLNLDLMGNGDEG"
BASE COUNT          537 a          694 c          719 g          744 t
ORIGIN      
        1 tatcaccggc caccagttca ttcacggtag ttcggttctg gccttccacc agcaacagct
       61 ggttcagttt ttcggaaacg ccggtggttt cattcaccag ttccatgccg ctctttacgg
      121 tgccgctgta cactttgaac aaggacaact cacccacgtg tggttcgctg atggttttga
      181 aaacgaatat gcaggctggg ccgttggttt cgcagggaag ggtaccgccg gccttcgttt
      241 tttgcggggg catttcgttg gcgctggggc acacattgtc gatgaaaccc atgaggcggc
      301 cgctgcccat gttcttttcc gcactgatgc agaacagggg gaagatgtcg tgcttgatca
      361 tggctttgtg caggccttcc ttcatttcat cttcattcag ttcgccctgc tcaaaatatt
      421 tttccatcag gctttcgtcg ttgctggcaa tggcttccac cagttcgcgg tgcatttcgt
      481 cggcggtagc tctctcgctg tcgggtatcg gctttttctc cggcttgccg ccgtctttgc
      541 catactcgta cattaccatg ttcagtacgt caatcacctg gttgaaaccg gtgccggcat
      601 ttacggggta ttgtactgcc accacgttgc tgccgaaatg tgatttggct tcggccaggg
      661 tgcggtggaa gtcggcattt tcgtgatcga gtttgttgac agcgaagatc atcggcgtct
      721 tgaattgttc ggtgtaatcc caaacaatat cggtgcccac ttccacaccg gcagtggcat
      781 tcagcaacat cacgccggta tcagccaccc gcagggcact gatcacttcg cctacgaaat
      841 cgtcgtagcc cggggtatca atgatgttga tcttgtagcc tcgccaggtg gtatgcagca
      901 aggaggagaa aatggagttg cctctttcgc gttccagttc gtggtagtcg cttacggtat
      961 tgccttctct taccgtgccg cggcggttaa taaggccggc ttcaaacagc atgcattcgg
     1021 ccagcgttgt tttaccgctg ccggcatggc cgagcagcgc aatgtttttg acgtgagcgg
     1081 tatcaaaagt tgccataaca gagatttttt ttagtgagta gaatatcagg cgtcaccata
     1141 gtgaaggtgc tgccaacctt tggttgctga atctaacggg attggttact gccgttgcag
     1201 gcagcaggta attacggtgg gttcgacgct tagcggccaa acaaaaacgg ttgcaagtgt
     1261 tgatacacca gcaaccgctt gctttgcatg cttatcccgc ttctccaatg aaacggtgaa
     1321 agtcggtttt caattgttca atgtcctcca gcagtttttt gtattggagt tccaggttgt
     1381 gatgaggtat gcgatggccg aaattgggat ggtgttcggc ttcggctacg tggtgcttga
     1441 tggcgtgctt gagatcgtga atgttgatga gttgaatgtg gaattggttg tggtaatgtt
     1501 ctacttcctt caaaaaatca tggtcggttt tgccggccgc tgctacatac agttcattgc
     1561 gcagatggat gatgtcgtct tttgccagac gaagatgttc gcgccactgg tcgcattcgg
     1621 ccagcagcgc cttgtgttcg gctacagtaa ccataacaaa gtttttttaa gtgagcaatc
     1681 ggatgaaaga actaatgaag gactgttaat atacgtcgtt ttgttccgtt ctccaatgtc
     1741 aaatttgcgc aatgatccca agccgctaca tgagccaaat catccttttt gatatctttc
     1801 atcatgtatg gtctccccac tttttcgttt tccggtttgt atactggtct tcctcatttc
     1861 tctgtcttcg tttacgccca cagcggcgca gccattggtg gccgacagcg cccgggtggc
     1921 ccgttggatg acgaccttgt cggcccccgg catgtacggc cgtggctatg taaaaggcgg
     1981 gctcgacagt gcggctgcat tcatcgttcg tgagttgcaa accctggggc tgcaggccaa
     2041 ccggctgcct tttaaaatgc cggtgaatac ctttcctcac aaagtgcaac tggccatcaa
     2101 tggccgaaaa ctattgcccg gcaaggattt cctggtgggg cctgaatcgg tgtcctttca
     2161 cggagcggcc agcctcgaac aagccgattc caatgtgtgg gtcgatgccc gcagaaaaat
     2221 aatcttcgaa acggctgata aactctcctg gagtgtggcc accgaacagg cggcattcac
     2281 ccgtttcacg gtagccaaaa gggcctggcc ctccgcactg cgaaaagtgg aagcggaggt
     2341 ggaagcggtt tatgattcgt cttttactgc ctccaacatt ttagcggtca ttcccggcac
     2401 ccgccggccc gattccatgt tggtttttac tgcccactac gatcacctgg gaatgatggg
     2461 cgccaacacc actttcgccg gtgccaatga caatgccagt ggtaccgccc tgctgttggc
     2521 actggcggcc tactatgcca cgcatcccgc tgcctattcg gtggccttcc tgttttttgc
     2581 cggtgaagag gccgggcttt atggttccaa agtattcacc gatcagccgg tctttccact
     2641 tgataaggtt cggttcctgc tcaacctcga cctcatgggc aacggggatg aagg
//
LOCUS       DATIQF010000217         2371 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_231306,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000217 DATIQF010000000
VERSION     DATIQF010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2371
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231306"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..367)
                     /locus_tag="VLL95_03425"
     CDS             complement(<1..367)
                     /locus_tag="VLL95_03425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37941.1"
                     /translation="MEEMVLLDAIERYLRGEMSESEKAGFEELRRTNAEVDQAVVEHH
                     AFLNQLDQYGQHKHLKHQLHQTHMRLLESNQISESVAEENAAPVVQFWNRYKRIIAVA
                     ASIAGITALSISAAVQLFAP"
     gene            complement(367..936)
                     /locus_tag="VLL95_03430"
     CDS             complement(367..936)
                     /locus_tag="VLL95_03430"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSR37942.1"
                     /translation="MKEYSREYRLLEGLARNDHHDIETIYKENFGLVQSFILNNNGTF
                     DDARDVFQEAMVVLYEKSKDSSFTLTCQLKTYLYSICRRLWLKKLQQQSRYSTPVEGF
                     EEMVPVEEEIEEKEKLDNDFETMENAMRSLGEPCKSLLEAFYIQKKQMVEIAEEFGYT
                     NADNAKNQKYKCLMRLKKLFFAQYNKQLK"
     gene            1190..1375
                     /locus_tag="VLL95_03435"
     CDS             1190..1375
                     /locus_tag="VLL95_03435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37943.1"
                     /translation="MKKLLFVAVIGALVACGESNTEATTTDTPVVEAPAVDTTAAAVD
                     TTAAVADTTAKADSTAK"
     gene            1743..>2371
                     /locus_tag="VLL95_03440"
     CDS             1743..>2371
                     /locus_tag="VLL95_03440"
                     /inference="COORDINATES: protein motif:HMM:NF012998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase domain-containing
                     protein"
                     /protein_id="HSR37944.1"
                     /translation="MTSETQVKSGNRIAIQGYEGSFHQEAARRFFGKETEVLPCDTFR
                     QVVSLTTQRKEATGGIMAIENSIAGSILPNYSLLQKNPVVIVGEVYLHIKQQLLVNPG
                     VQLEDIKEVHSHPMALLQCMDFLEKHPHFKLIESEDTALSAKHLHLRKSKHQAAIAGK
                     LAAELYNLEVLVPNIHTMKNNYTRFLVLKHQKDAAEVEAADKASVKFHT"
BASE COUNT          621 a          566 c          525 g          659 t
ORIGIN      
        1 tgggagcgaa cagctgaacc gctgcgctga ttgataaagc ggtaataccg gcaatagaag
       61 ccgccacggc aatgatccgc ttgtaccgat tccagaactg aaccacagga gccgcatttt
      121 cttccgccac gctttctgaa atctggttgc tttccagcaa gcgcatatgg gtttggtgca
      181 actggtgctt gaggtgcttg tgctgaccgt attgatccaa ttggttcaga aatgcgtgat
      241 gctcaaccac cgcctggtct acctcggcgt tggtgcgacg caattcttcg aaaccggctt
      301 tttccgattc cgacatctcc ccgcggagat atctttcgat cgcatccaac agtaccattt
      361 cttccatcac ttcaattgtt tattgtattg ggcaaaaaat agctttttca atcgcatcag
      421 gcatttgtac ttctggtttt tggcgttgtc ggcattggta tagccaaact cttccgctat
      481 ttcaaccatc tgtttcttct ggatatagaa ggcttccaac aaacttttgc atggttcacc
      541 aaggcttcgc atggcatttt ccatggtttc aaaatcgttg tcgagcttct ccttctcctc
      601 aatttcttcc tctacgggaa ccatttcctc aaatccttct accggggtgg aatacctgct
      661 ttgctgctga agctttttca gccaaaggcg ccggcaaata gaatagagat atgttttcag
      721 ctggcaggta agggtaaacg acgagtcttt actcttttca tacagcacca ccattgcttc
      781 ctggaataca tcgcgggcat catcaaaagt gccgttgttg ttcaggatga atgattgaac
      841 gagtccgaaa ttctccttgt aaatggtctc aatatcgtga tgatcgttcc gggcaagtcc
      901 ttccagcaat ctatattccc tgctatactc tttcaccaaa atccgttttt aattcttttt
      961 tgccacaatg gtaaccctgc caaagcagcg agctgatatt aattattgtc aaaaatcgcc
     1021 tttgcagcca atacaatagt ctttcaatac cggctttcgc aaaaatggat ggaaaatcgg
     1081 gtcattccac ccaggaagat ggatttgggg gccaaaaaaa tttttttggc gatcgaggtt
     1141 accttttttc agccccggta taattgtcaa actataaaat caaagaacaa tgaaaaagtt
     1201 gcttttcgtt gccgttatcg gcgctctcgt tgcttgtggt gagtctaaca ctgaagctac
     1261 aaccactgac actcctgtag ttgaagctcc tgctgttgac actactgctg ctgctgttga
     1321 cactactgcc gctgttgctg acactacagc taaggctgac agcactgcca agtaatttca
     1381 gacaattaca aagcctttca cgctttctct agcttgcctg agatgtgaaa tgagctaaag
     1441 agttttatat ggcaagcaat cgttaggccg ttctgattct tcagaatggc ttttctttta
     1501 tagtctcggt attcatttac tgaaaaccag ttttttttga aggattcgca aaaaaatgtt
     1561 ggttgatgtg aacatgcggc atatatttgg cccaatgaat aaatggtttg catacgccgg
     1621 ttactatttt ttctactttt ttatgaaagc ggaccggatg cagtatgcaa tagtgaaatg
     1681 aaataaaaca ctttaaaata caagcccggt cccaaaaagg accgggtttt ttgttgacca
     1741 agatgacaag tgaaacacaa gtaaaaagcg gtaaccggat agccatccag gggtatgaag
     1801 gaagttttca ccaggaggcg gcccgccggt ttttcgggaa agaaacagag gtattgccct
     1861 gtgatacctt caggcaggta gtgtcgctga caacgcagcg aaaagaagcc actggcggca
     1921 tcatggccat tgaaaactcc attgccggca gtattctgcc caattactcg ctcctgcaaa
     1981 agaatcctgt ggttatcgtc ggggaagtct atctccacat caaacagcag ttgctcgtca
     2041 accccggcgt tcagctggag gatataaaag aggtgcattc gcatcccatg gcactgctcc
     2101 agtgcatgga ttttttggaa aagcaccccc attttaagct aattgaatcg gaagacaccg
     2161 ctttgagtgc caaacacctg cacctgcgga aaagcaagca ccaggctgct attgccggca
     2221 aactggcggc agaactctac aacctcgagg ttttggtgcc caacatccac accatgaaaa
     2281 acaactacac ccgcttcctg gtgctgaagc atcagaagga cgcggcggag gtggaggccg
     2341 cagacaaggc ttcggtcaaa tttcatacgg a
//
LOCUS       DATIQF010000218         2310 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_94340, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000218 DATIQF010000000
VERSION     DATIQF010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94340"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(93..1187)
                     /locus_tag="VLL95_03445"
     CDS             complement(93..1187)
                     /locus_tag="VLL95_03445"
                     /inference="COORDINATES: protein motif:HMM:NF013117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HSR37945.1"
                     /translation="MNSILSEVIFDNTLLDYLVSAGIILAVYVFRRLLSKGTAWLISR
                     LIASKNRPFDRKRFQELVVQPIGLFLLVLAVLIACYRLHLPEILKFSVYKVSFQQILE
                     SIARAVLIGSFLWLCNRVILYISYLLQQKAAQTEDKTDDQLVIFFRDFLKVIVWIIGI
                     LLILKYSLGVNLSHVVTGLSIVGAALALAFRESLENLIASFVIFFDKPFTIGDLVKVE
                     NVTGTIEKLGLRSTRIRTTEKTFVTVPNKKMVDSILDNQSLRTQRNVISKIEVGFKAS
                     PEQIAAFIADAEQLLNQPDILDYNVFLSDTGVQAHIVHIEYFVRMEVAVKDFFKLRES
                     VNLELIRLMSRHQLEFAAANENLMMRRSGS"
     gene            complement(1203..2036)
                     /locus_tag="VLL95_03450"
     CDS             complement(1203..2036)
                     /locus_tag="VLL95_03450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37946.1"
                     /translation="MRQFLKIWLAGFLLLLCHHSNSQQSFEPVKIFQGTWIDFDADNL
                     GNVYLIAKDQQIKKVNTQYDSVGVFNEVRNFGPLHAIDVSNPLRVILWYKDFATLLIL
                     DRFLNRRTVIDLRRIGILQCSAVAQSFDNNIWLFDELDNKVKKINESGELLLESADFR
                     ILFDDPPHPFKMEDFNKQLYAYDSTRGLVVLDYFGAYKQVFSYKGWRSIQGFEKGLLA
                     STEQSLIYVPPDGINTISVTLPAKMLPYKKIRVQQNKCYVLGADGVLRIYQLPENFSP
                     R"
     gene            complement(2033..>2310)
                     /locus_tag="VLL95_03455"
     CDS             complement(2033..>2310)
                     /locus_tag="VLL95_03455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37947.1"
                     /translation="GLANFFSRKSREAVADTEKHFLGADKEWLMVHSREKLQKEQFDY
                     FVYGHRHVPGIHPLQNGSEYVNLGDWVIHFTYAMFDGEKMSLHTYQP"
BASE COUNT          599 a          522 c          606 g          583 t
ORIGIN      
        1 atgaaagaag gcaaagaagt gggccgaata acggagtatg gcaatacggg ccttcctgat
       61 gccgaactgg ccgcattatt gggcaagctg gattaactgc ctgatcgacg catcatcagg
      121 ttttcattgg cagcggcaaa ttccaattga tgcctgctca tcaaccgaat caattcaagg
      181 ttgacggatt cacgcagttt gaaaaaatct ttcacagcta cttccatgcg cacaaaatat
      241 tcgatgtgca caatgtgtgc ctgcacgccg gtgtcggata agaacacatt gtagtcgagg
      301 atatcgggtt ggttcagcaa ttgctcggca tcggcaatga aagctgcgat ttgttccggc
      361 gaagctttaa aacccacttc gattttgctg atcacattgc gctgggtacg caggctttgg
      421 ttgtcgagaa tggaatccac cattttttta ttgggaacgg tcacaaaggt tttctccgtg
      481 gtacgaatac gggtgctgcg caagcccagc ttttcaatgg taccggttac gttttccact
      541 ttcaccaggt cgccaatggt gaagggtttg tcgaagaaga tgacaaaaga agcgatgagg
      601 ttttccaggc tttcgcgaaa ggccagtgcc aatgcggcgc ccacaatgct caggccggtt
      661 accacatggc tgaggttgac acccagtgaa tatttcagga tgagcaggat accgatgatc
      721 caaacgatca ctttcaggaa atccctgaaa aagatgacaa gttgatcatc agttttgtct
      781 tctgtttgcg cagccttctg ttgcagcagg taggagatgt agaggatgac gcggttgcaa
      841 agccagagaa aactgccaat gagtacagcc cgggcaatgg attcgagtat ttgctggaaa
      901 gaaaccttgt aaactgagaa tttcaggatc tcaggcaaat ggaggcggta gcaagcaatc
      961 agtaccgcaa gtaccagcag aaacaagccg atgggttgca ccaccaattc ctggaagcgc
     1021 ttacggtcga aaggcctgtt tttagaagca atgaggcggc tgatgagcca agcggttcct
     1081 ttcgaaagca ggcgacggaa aacatacact gccaggataa tgccggccga taccaggtag
     1141 tcgagcaggg tgttgtcgaa tatcacttcc gagagaatgc tgttcatggt gtcagtgtca
     1201 atttatcggg gagaaaaatt ttccggaagc tggtaaatgc gtagcacgcc atcggcgccg
     1261 agcacgtagc atttgttttg ttgcacccgg attttcttgt acggcagcat tttagctggt
     1321 aatgtcacgc tgatcgtatt gatgccatcg ggtggtacgt agatcagcga ttgttcggtg
     1381 gaggcgagca ggcctttttc aaatccctgg atggaacgcc atcccttgta tgaaaatacc
     1441 tgtttgtatg ccccgaaata atcgagcacc accaaacccc gggtgctgtc gtaggcgtac
     1501 agttgtttgt tgaagtcttc cattttgaag gggtggggcg gatcatcgaa caggatcctg
     1561 aaatcagccg actccagcag caattcaccc gattcgttga tcttcttgac cttgttgtcc
     1621 aattcgtcaa acagccagat gttgttatcg aaactctggg ccactgcact gcattgtaaa
     1681 ataccaatgc ggcgcaggtc tatgacggtt ctccggttga gaaaccggtc gaggataagc
     1741 agggtggcaa aatccttgta ccacaagatc acccgcaggg gattggaaac atcgatggca
     1801 tgcagcggac cgaagttgcg tacttcattg aacacgccca ccgaatcata ctgggtattg
     1861 acctttttga tttgctggtc tttggcgatg aggtaaacat tccccaggtt gtcagcatca
     1921 aaatcaatcc aggtgccctg gaatattttt acgggttcga atgactgttg tgaattggag
     1981 tggtgacaca acagcagcag aaaaccagcc agccatattt tcaggaactg cctcatggtt
     2041 gataggtgtg aaggctcatc ttttcgccat caaacatggc ataggtgaaa tgaattaccc
     2101 agtcaccgag gttgacatat tcgcttccat tttgcaaggg atgaataccg ggtacgtggc
     2161 gatggccata tacaaagtag tcgaactgtt ctttctgcaa tttttcgcgg ctgtggacca
     2221 tcagccattc tttatcggcg ccgagaaaat gtttttcggt atccgccacc gcttcccggc
     2281 ttttgcgact gaagaaattg gcaaggccaa
//
LOCUS       DATIQF010000219         2371 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_3200, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000219 DATIQF010000000
VERSION     DATIQF010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2371
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3200"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..223
                     /locus_tag="VLL95_03460"
     CDS             <1..223
                     /locus_tag="VLL95_03460"
                     /inference="COORDINATES: protein motif:HMM:NF021483.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2200 family protein"
                     /protein_id="HSR37948.1"
                     /translation="EEQLQQQISEKANFQTFFQRAKLHPNAHLITGLICGYRVEEIED
                     PLTQQVRYLDKLVDELAKGKKMEKILRTK"
     gene            741..>2371
                     /locus_tag="VLL95_03465"
     CDS             741..>2371
                     /locus_tag="VLL95_03465"
                     /inference="COORDINATES: protein motif:HMM:NF014675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 10 glycosylhydrolase"
                     /protein_id="HSR37949.1"
                     /translation="MDSTHYQKTVGPELAKTSALPQNILGSNTCEATPPEVSPKNPLR
                     DLRGAWLTSVFNLDWPTSRTATPAVQQADLLKILDTLRNAGFNTVFLQVRTGSDALYA
                     SPHEPWSYYLTGTEGMAPSPFWDPLAFAVSAAHARGLDIHAWINPYRARTGSFSLSPN
                     HVINQNPSWILTIGSNLILNPGLPQVRTHITTIVADIATRYDVDGIHFDDYFYPSAIN
                     TEDAGTYAAHNPKGIPTVADWRRDNVNQLIAKVYDTLQQINQVSGRNLVFGVSPFGIW
                     KSGTPAGISGTSSYSAFYCDPIAWLQAGKVDYLSPQLYWKLGGAQDYSILSQWWNDQG
                     KQYGRHIYPGLAWYKMVDANNWPASEIENQIYLNRQPERNEIRGEVGYRTAQLMADSK
                     GLKTALQQGQYRYKSYAPAFGWKDNTCPNAPTQLWLDGDTLRWQAPSPAADGDTAVKY
                     VVYRYLNDQEAVVRKQDGTRVVDIVATSKLYLPQAGYYRYVVSALDKNNNESDGIMSA
                     MPNVVLCPGGSLALSAMITGASYQCQSLNNGNWEVL"
BASE COUNT          643 a          658 c          554 g          516 t
ORIGIN      
        1 agaagaacaa ctgcaacaac agatcagtga aaaagcaaac ttccaaacat tcttccagcg
       61 agcaaagctc catcccaatg cccacctcat caccggcctt atttgcggct accgggtgga
      121 ggaaatagaa gaccccttga ctcagcaggt gcgctacctc gacaaactgg tggacgaact
      181 ggccaaggga aagaaaatgg agaagatatt gcgaaccaaa taagcactca tcaattcttg
      241 tacccattcg tgccaggccc cgccgagtca ctacattgta tttacgctgc aggaaaaagt
      301 gtcgtcaatg aaatgcagct gagacacccc caattgaaat cattgaagca atggcaggca
      361 ccgcaggcat aattgttatg catcgtactg gcgcaaaagc caattcattg tagcagcgag
      421 gcactggcct gaccgtgtct catttcagta accgaatgca atgcatgcca ctcctgcagt
      481 atagttaatt taatttctta ggaatagcag gcatcgcttt tttgctgcaa ttttgaacgc
      541 tcctgtttgg cgccttgcca ttgcagcagc gaatccgtag tcggcctttt atgaaatcta
      601 cattcaggta tcctcaagtt tttacaatct gttccatttt gctgcttgca agccttgcgg
      661 ccaaggcaca gcaaatgcat ggtagcttgt caccagttgc ggcggcgaaa caaccggttg
      721 caaaaaacag cagtctgcaa atggattcaa cccattatca aaagaccgtc ggacccgaat
      781 tggcaaaaac atctgccctc cctcaaaaca tccttggctc caatacctgt gaagccacgc
      841 cgccagaagt gtcccccaaa aacccgctgc gtgatttgcg aggcgcctgg ctcacctccg
      901 tattcaacct cgactggccc accagccgca ccgcaacacc ggcggtacaa caagctgatt
      961 tgcttaaaat acttgatacc cttcgcaatg ctggtttcaa caccgtgttt ctgcaagtgc
     1021 gtaccgggag cgatgcactc tatgcctcac cccatgaacc ctggagttat tacctgacag
     1081 ggacagaagg aatggcccct tcgccctttt gggatccact tgcatttgca gtaagtgcag
     1141 cacatgccag agggcttgac attcacgcat ggatcaatcc ctaccgggca cgcacaggtt
     1201 cattcagcct ttcacccaac catgtcatca atcaaaaccc cagttggata ctcaccatag
     1261 gctccaacct gatactgaac ccaggactgc cccaggttcg aacccatatt acaaccatcg
     1321 ttgccgacat tgccacccgc tacgatgtgg atggcatcca ttttgacgac tatttctacc
     1381 cttctgccat aaacacagaa gacgccggca cctatgcagc ccataatccg aaaggcattc
     1441 ctaccgtggc cgattggcgg cgcgacaatg taaaccaact gattgccaag gtttatgata
     1501 cgctgcaaca aatcaaccag gtgtcgggca ggaatttggt atttggagta agtccctttg
     1561 gcatatggaa aagcggcacg ccggcaggaa tcagcggcac ctcctcctac agcgccttct
     1621 attgcgatcc tatagcctgg ctgcaggccg gcaaagtgga ttacctgtcg ccacaattgt
     1681 attggaaact tggcggtgcg caagactaca gtatcctttc acaatggtgg aacgaccagg
     1741 gcaaacaata cggccggcat atatacccgg gacttgcctg gtataagatg gtggatgcca
     1801 acaattggcc cgccagcgaa attgaaaacc agatctacct gaaccggcag ccagaacgca
     1861 atgaaattcg gggagaagtg ggatatcgaa ccgcacagtt gatggccgac agcaaaggcc
     1921 tcaaaacagc cctgcaacaa gggcagtacc gttataaatc gtacgccccc gcttttggct
     1981 ggaaagacaa tacctgccct aacgctccca cccagctatg gctggatggt gacaccctgc
     2041 gctggcaggc gccatcgcct gcagccgatg gtgatactgc tgtgaaatac gttgtttatc
     2101 gctacctgaa cgaccaggaa gctgtggtgc ggaaacagga tggaaccagg gtggtggata
     2161 tagtggccac cagcaaactt tacctgcctc aagccgggta ctatcgctat gtggtaagcg
     2221 cactcgacaa aaacaacaat gaaagcgatg ggataatgag tgcaatgccc aatgtggtgt
     2281 tatgcccagg tggcagcctt gccctttcag ccatgattac cggtgcctca taccagtgtc
     2341 aatccctgaa caatggcaat tgggaagtac t
//
LOCUS       DATIQF010000220         1792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_246540,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000220 DATIQF010000000
VERSION     DATIQF010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1792
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246540"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..840
                     /locus_tag="VLL95_03470"
     CDS             <1..840
                     /locus_tag="VLL95_03470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37950.1"
                     /translation="GNSLTESLHTKASSHYAVPAASMFATQPVHSTELPTLAASAENP
                     QLKKQRHWKWMVYAGAGINISASPLTMTKASQDMSTGSPTNVTLVTQSQQSGGWHSSA
                     GVLAQHALGRKWNLQIGTGFNYGTWHGNSQTYRDSISTGPMVTYRSLVMTQAKSYNAL
                     MLEIPIHINYKLAGKKNNGWWLTTGLNNQVVLSVKEKNSTTQPLQAGTTADAKSLTGS
                     ATTWQPQLRAGFVFDRQGKKTHWQLSPLANLTLPTFFKSSTDDMGIHNVQLQFRYYLN
                     SRQ"
     gene            919..1260
                     /locus_tag="VLL95_03475"
     CDS             919..1260
                     /locus_tag="VLL95_03475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37951.1"
                     /translation="MKASLLFILITGLALLAGCEKTTDDWRTSPCVASQIRAFKNESI
                     CGNAAVLEFRFQQKLVYVFSNGNCVADVPAKVIDNACQTLGMLGGFPDNQMINGELFS
                     NATFIRTVWKK"
     gene            1314..>1792
                     /locus_tag="VLL95_03480"
     CDS             1314..>1792
                     /locus_tag="VLL95_03480"
                     /inference="COORDINATES: protein motif:HMM:NF019912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37952.1"
                     /translation="MKNVILAFTTLLMLAFGSCIKDSMKQSYVYYRPVYKTKQEVRAA
                     INSSTPKSIVNPGKLFYKDGYVFLNDLEKGVHIIDVRNPASPQVVAFVAIPGSVDLAV
                     RGNILYADLTTDLVAIDISNPLQVKLTKVLEGVFPHRYYNQFRADTTRIITEWVRVDT
                     "
BASE COUNT          499 a          482 c          406 g          405 t
ORIGIN      
        1 ggcaattctc tcacagaatc attgcatacc aaagcttcca gccattatgc agtgcctgcg
       61 gcttcaatgt tcgcaacaca gccggttcat tcaaccgaac tgccaacgct tgctgcatcg
      121 gctgagaatc cacaactgaa aaaacagcgc cactggaagt ggatggttta tgcaggggcc
      181 ggaatcaata ttagcgccag ccccctcacc atgacaaaag cctcccagga tatgagtact
      241 ggctccccta ccaacgtgac gctggtcaca cagtcgcaac agtcgggcgg atggcatagc
      301 agcgctggtg tgctggccca acatgccctg gggcgcaaat ggaatctgca aataggcaca
      361 ggcttcaact atggcacctg gcatggcaac agccaaacct accgcgacag tatttcaacc
      421 ggacccatgg tcacctaccg gtcgctggtg atgacacagg ccaaaagcta taacgccctg
      481 atgctggaaa ttcccattca catcaactac aaactggcgg gaaaaaagaa caacggctgg
      541 tggcttacga cagggctcaa taaccaggtt gtgctcagcg tgaaagagaa aaacagcacg
      601 acccagcctt tgcaggcagg caccacggcc gatgcgaaat cgttgaccgg cagcgccacc
      661 acctggcagc cccagttgcg ggcaggcttt gtattcgacc gacagggaaa gaaaacgcac
      721 tggcaactga gcccgctggc caacctgact ttgccaacct ttttcaagtc gtcaactgat
      781 gatatgggca tccacaatgt ccagctgcaa ttcaggtatt acctcaacag tcgccaataa
      841 tttctcgagc ttcgtgcaac gattggaact tttcatgttt cattctattt gtaatcacac
      901 accaccccaa ctatttgtat gaaggcatcc ttgttattca tcttgattac cggcctcgct
      961 ttgctggcag gatgtgaaaa aactaccgat gattggcgca ccagtccatg tgtagccagc
     1021 caaataaggg ctttcaaaaa cgaaagcatt tgcggcaatg ccgctgtgct agaattccga
     1081 tttcaacaaa aactggtgta cgttttcagc aatggtaact gtgtggccga tgtgccagca
     1141 aaggtcattg acaacgcatg ccaaaccctc ggcatgttgg gcggctttcc cgacaaccaa
     1201 atgatcaatg gggaattgtt ttccaatgcc acttttataa gaacggtttg gaaaaaataa
     1261 tccttaccaa actttcatca accgtattta ctacatagaa actacactca tttatgaaaa
     1321 atgtaattct tgccttcacc accctgctca tgctggcttt cggctcctgc atcaaggaca
     1381 gcatgaaaca atcttatgtg tactatcgcc cggtatacaa aaccaaacag gaagtgcggg
     1441 ctgccatcaa cagcagtacc ccgaaaagca ttgtcaaccc cggcaagttg ttttataaag
     1501 acggttatgt ttttctgaac gacctcgaaa aaggcgtaca cattattgat gtaagaaacc
     1561 cggcgtcacc acaggtagtg gcatttgtgg ccattcccgg cagcgtggac ctggcagtga
     1621 gaggcaacat tttgtatgcc gacctcacca ccgatttagt ggccatcgac atcagcaatc
     1681 cgttgcaggt aaaactcacc aaagtgttgg agggtgtatt cccccatcgt tattacaatc
     1741 aattccgggc agacaccacc cgtatcatca ccgaatgggt aagggtggat ac
//
LOCUS       DATIQF010000221         3109 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_79276, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000221 DATIQF010000000
VERSION     DATIQF010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3109
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79276"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..461
                     /locus_tag="VLL95_03485"
     CDS             <1..461
                     /locus_tag="VLL95_03485"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: protein motif:HMM:NF014453.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006486 - protein glycosylation [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HSR37953.1"
                     /translation="YKQQRIGFKGVAFTIYKFRSMNSDAEKNGPALSNDSDTRITPFG
                     KFMRKWRLDELPQLWNILNGDMSLVGPRPERQFYADQIAAIEPSYRLLSRVKPGLTSW
                     GMVQFGYSSSVPEMVERMQYDLFYLENISLLLDFKIMMHTLQIILTGKGK"
     gene            474..1493
                     /locus_tag="VLL95_03490"
     CDS             474..1493
                     /locus_tag="VLL95_03490"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide epimerase"
                     /protein_id="HSR37954.1"
                     /translation="MKVRFTTTNLPFKYPFTISKGTKTHQPALVVQLEHLGITGLGEA
                     PSIAYYNIPVEKMIADLTAKKLFVEKFAFTEPTRYWHYLHHLFPANGFLVCALDIAAW
                     DLYGKMKRQPLYKFWSQGNEKMPLTDYTIGIDTIEKMVEKMNEKPWPVYKIKLGTDQD
                     VAIMEALRKHTDAMFRIDANAAWTADEALEKIKVFKDLGVEFIEQPLAKDDWEGMKKL
                     YAESPLPLIADESCVYEEDVAKCDGHFHGINIKLTKCTGITPALRMIEDARKRNMKVM
                     VGSMNKGSIGSAAIVHLMPMIDYVDVDGPLLLSEDVAQGLVYNNGEVSLPQSPGLGIT
                     SPLFQ"
     gene            1504..>3109
                     /locus_tag="VLL95_03495"
     CDS             1504..>3109
                     /locus_tag="VLL95_03495"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HSR37955.1"
                     /translation="MKHVSLFVAVILLGICSNPLYSQKRNAGIGLALSGGGAKGLAHI
                     GILKAIDSAELNIDYLSGTSMGSIVGGLYAAGYSADSIETIARNIDWNVVLSNAMGMK
                     NFTMEEKSEFGKYAVELPLKDFKLKIPAGLLESQELWLVLEKYFFPVAGVKDFDKFSI
                     PFRCVGTDLINGKAVSLGKGNIVPSVRSSMALPGIFSPVDIDGIRLIDGGVLRNLPVT
                     DIKEMGAKYAIGVSVSSPVASKEELEDAFAVTTQAIFINDNKSFAEQSALCDELIQIP
                     MGTYSSGSFDQANGIIDLGISIGRQYYPYFKRLADSLKKANPDYVFRKNRLPEVAEYK
                     ISSVTVKGLSTYEQQAFLDQIGFDSSQSITSDQLQKNTRRAFAYRMYKSITYHLLPDG
                     RGGYELEYDVKPESKMKLKVGISENSFTGFGVQLNVTARNTLTPFSRTMLSLNLGENF
                     RAMLEHLQMFGYGNPWSNRFRAYYESQEVPVFDNFRPTGRYALKYLQLDNRFQLSAKR
                     RSAGGLGIQWEYLFADPKIENGLTLKG"
BASE COUNT          871 a          721 c          756 g          761 t
ORIGIN      
        1 tctataaaca acagagaatc gggttcaaag gcgtggcatt taccatttac aaattccggt
       61 caatgaatag tgacgcggaa aaaaatggcc ctgctttgtc caacgattcc gacacacgca
      121 ttacgccctt tggaaaattc atgcgcaaat ggcgactgga tgaactccca caactttgga
      181 acatcctcaa tggcgacatg agcctggtgg gcccacgacc ggaaaggcaa ttctatgccg
      241 accaaattgc ggctattgag ccatcataca ggttgcttag ccgcgtaaag cccggactga
      301 ccagttgggg catggtacaa tttggctatt cctcttcggt tcccgaaatg gtggaacgca
      361 tgcaatacga cttgttttac ctggagaata tctcattact gctcgacttt aagatcatga
      421 tgcacacgct gcaaatcata cttacaggca agggcaaata attgattgat caaatgaaag
      481 tcagattcac tactaccaac cttccgttca aatatccttt caccatttcc aaaggcacga
      541 aaacgcatca gcctgcactg gtggttcaac tggaacattt aggtattacc gggttgggag
      601 aagcaccatc cattgcctat tacaacattc cggtcgaaaa aatgatagcc gacctgacgg
      661 ccaaaaaatt gttcgttgaa aaattcgcct tcaccgaacc cacccgctac tggcactacc
      721 tgcatcacct ttttcctgcc aatggatttt tggtgtgtgc tcttgatata gctgcctggg
      781 atctgtatgg caaaatgaaa cggcagccct tgtacaaatt ctggagccag ggcaatgaaa
      841 aaatgccact cactgattac accattggca ttgataccat tgaaaaaatg gtggagaaaa
      901 tgaatgaaaa accctggccg gtgtacaaga tcaaacttgg taccgaccag gatgtggcca
      961 tcatggaagc gctgcgaaaa cataccgatg ctatgtttcg cattgatgcc aatgcggcat
     1021 ggactgccga cgaggctctt gaaaaaataa aagtattcaa agacctgggg gtagaattca
     1081 tcgagcagcc gctggccaaa gatgattggg aaggcatgaa aaaactgtac gctgaaagcc
     1141 cgctgcccct catcgccgat gaaagctgcg tgtacgaaga ggatgttgcc aaatgcgatg
     1201 gtcactttca cggcatcaac atcaaactga ccaagtgcac cggcattacg ccagccctgc
     1261 gcatgataga agatgcccgg aagcgcaaca tgaaagtgat ggtaggcagc atgaataaag
     1321 gcagtatagg ttcggctgcc attgtgcatt tgatgccaat gatcgattac gtggatgtag
     1381 atggcccgct attgctttca gaagatgtgg cacaaggatt ggtctataac aacggtgaag
     1441 tttcgttgcc acaatcaccc ggcctgggta ttacctcgcc cctctttcaa tagttttgag
     1501 cttatgaaac atgtttcgct tttcgtggca gtcattttgt tgggcatttg ctctaatccc
     1561 ttgtactccc aaaagcgaaa tgcaggaatt ggtttggcac tgagtggagg tggcgccaaa
     1621 gggctggccc acatcggcat actcaaggcc atcgattcag cagagttgaa cattgactac
     1681 ctcagtggca ccagtatggg cagcattgtt ggcggactgt atgcagccgg ctattccgcc
     1741 gattccattg aaaccatagc gagaaatatt gactggaatg tggtgctgag caacgccatg
     1801 ggcatgaaga attttaccat ggaagaaaaa agtgaatttg gaaaatatgc ggtcgaactt
     1861 ccgctgaaag atttcaaatt gaaaattccg gccggcctgt tggaaagcca ggaattgtgg
     1921 ctggtgttgg aaaagtattt tttcccggtt gcaggcgtca aagattttga caaattcagc
     1981 attccttttc gctgcgtggg cactgacctg atcaacggca aagctgtttc gctgggcaaa
     2041 ggaaacatcg tgccttccgt aagatcgagc atggcgcttc ccggcatttt ctcgccggta
     2101 gatattgacg ggatccggct gatagatggc ggcgtattgc gcaacctgcc ggttaccgac
     2161 atcaaagaaa tgggagcaaa atatgccatc ggcgtatcag tgagttcacc ggttgcctcc
     2221 aaagaagaat tggaagatgc tttcgccgtg actacccagg ccattttcat caatgacaac
     2281 aaatcgtttg ccgaacaatc agccttgtgc gatgagttga tccaaattcc catgggcact
     2341 tattcttcgg gcagttttga ccaggccaac ggcatcatcg atctgggcat cagtattggc
     2401 aggcaatatt atccctattt caaacggctg gctgattcgc tgaaaaaagc gaatcctgat
     2461 tatgtatttc gcaagaaccg gttgccggaa gtagctgaat acaaaatttc gtcagtaact
     2521 gtgaaaggcc tttctaccta tgagcagcaa gcatttcttg atcaaatcgg ttttgattct
     2581 tcccagtcca tcaccagcga ccagttgcaa aagaacacac gcagggcatt tgcctatcgc
     2641 atgtataaat ccatcactta ccacctgctg cctgatggaa gaggaggata cgaactggaa
     2701 tatgatgtaa aaccggaatc gaagatgaag ctgaaggtgg ggatcagtga aaattctttc
     2761 actggtttcg gcgttcaact caatgtgaca gcgaggaaca cactgactcc cttctcccgc
     2821 accatgttgt cattgaacct gggcgaaaat ttcagggcca tgctcgaaca cctgcaaatg
     2881 tttggctatg gcaatccctg gtccaaccga ttcagggcct actacgaaag ccaggaagtg
     2941 ccggtgtttg ataatttcag gcctacaggg cgctatgcat tgaagtacct gcaattggat
     3001 aacaggtttc aattgagtgc caaaagacga tcggcaggtg gactaggtat acaatgggaa
     3061 tacttgttcg cagatccaaa aattgagaac gggctcacct taaagggag
//
LOCUS       DATIQF010000222         1722 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_292100,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000222 DATIQF010000000
VERSION     DATIQF010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1722
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292100"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1048)
                     /locus_tag="VLL95_03500"
     CDS             complement(<1..1048)
                     /locus_tag="VLL95_03500"
                     /inference="COORDINATES: protein motif:HMM:NF021981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S26 family signal peptidase"
                     /protein_id="HSR37956.1"
                     /translation="MGWIIFLIGTLGWHLGMYGMFKKAGIEPWKALVPFYNTWCIIEK
                     IQVRRLWFWLQFIPIAGQFVSIWLTIIFVMHFGRFNVLHHAAAVFVPFIYFPYLGFSG
                     QERYAGHEVFRNYRKPGSREWIDAAVFAVVAATLIRTFIFEAYTIPTPSMEKTLLVND
                     FLFVNKVAYGPRIPQTPLSFPFVHNLMPFSQKPSYLKWIQLDYKRIPGYEKVERNDVV
                     VFNFPMGDTVINHPDYGSKVPYYDVLRKDYKGNREALMAEWGDQILVHPMDKTDNYIK
                     RCVGVAGDSIQVKEGVLYVNGQRGYQPEGSQIRYRIVTNGTPIDFNTLEENTGIDIRW
                     EDREFELQQLSMQFS"
     gene            1249..>1722
                     /locus_tag="VLL95_03505"
     CDS             1249..>1722
                     /locus_tag="VLL95_03505"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HSR37957.1"
                     /translation="MQTFSIRDMERMTGVKAHTLRVWEHRYGLALPHRKDSQHRYYTN
                     EDLQKILRIAWLYQRGYKISRIAALDDSALSALIQEAVNHGNGHQKTIESLLHASQQF
                     DGDLFSHLLQKAILQLGMEEAVRQVIYPYLEKIGLLWMNDSVMPAQEHFSSQFIMH"
BASE COUNT          440 a          414 c          444 g          424 t
ORIGIN      
        1 tgctgaactg catcgatagt tgttgcaatt caaattcgcg gtcttcccag cgaatatcga
       61 tgccggtatt ttcttccagc gtgttgaaat caatgggcgt tccattggtc acaatgcgat
      121 agcgaatctg gctgccttcg ggttggtagc cacgctggcc attcacatag agcacgcctt
      181 cttttacctg gatgctatcg ccggctacac caacacaacg cttgatatag ttgtccgttt
      241 tgtccatggg atgcaccaat atctggtcgc cccattcggc catcagtgct tcgcggttgc
      301 ctttgtagtc tttgcgcagc acatcgtagt aaggcacttt cgacccgtaa tcaggatggt
      361 tgatcacggt gtcgcccatc gggaaattga acacgaccac atcattgcgt tccacttttt
      421 catacccggg aatgcgtttg taatcgagtt gtatccactt gaggtaggaa ggcttttgcg
      481 agaacggcat caggttgtga acaaagggaa aactcagcgg cgtttgcgga atgcgtgggc
      541 cgtaggcaac tttgtttacg aagaggaaat cgttcaccaa caatgtcttc tccatggagg
      601 gagtagggat ggtgtaagct tcgaaaatga aagtgcgaat gagcgtagcg gctactacgg
      661 caaacacagc agcatcaatc cactcgcggc tgccgggttt cctgtaattg cggaatactt
      721 cgtggccggc gtatcgctcc tggccgctga agccgaggta agggaaataa atgaaaggca
      781 caaaaaccgc ggcggcatgg tgcaatacat tgaagcggcc gaagtgcatt acaaaaatga
      841 tggtgagcca gatgcttaca aactggccgg caatgggaat gaattgcagc cagaaccaca
      901 accggcgcac ctggatcttt tcaataatgc accaggtatt gtaaaaagga accaatgctt
      961 tccagggttc gatgcctgct tttttaaaca tgccgtacat gcccaaatgc cagccaaggg
     1021 tcccaatcaa aaaaattatc cagcccatga ttattgttta atagctgccg gcaaaataag
     1081 ccctccggca ttacccacaa aaataccgga taggccatag cagcaaggcc gcatctggag
     1141 tttaccattt ccttagagta tattcggctg ttgtgaaggt tgagcggcgt tgatttttgt
     1201 cagttttcag gttgttggag ggtattattt ttccgccttc atcagaaaat gcaaaccttt
     1261 tctatacgcg atatggagcg catgacgggc gtaaaggcgc acaccctgcg ggtgtgggag
     1321 caccgctatg gcctggcact gcctcatcgc aaagacagcc agcaccgcta ttataccaac
     1381 gaagacctcc agaagatctt gcggattgca tggctgtacc agcggggcta caaaatatcc
     1441 cgcattgccg cccttgacga tagtgctttg tcagcactca tccaggaagc ggtaaaccat
     1501 ggcaatggac accagaaaac aatagagtcg ctgctgcacg ccagccagca gtttgatggg
     1561 gatttattca gtcacctttt gcaaaaagcc attttgcagt tgggcatgga ggaggcggta
     1621 cgccaggtga tctatcctta tcttgaaaag atcgggttgc tgtggatgaa tgattcggta
     1681 atgccggcac aggagcattt tagcagccag ttcatcatgc ac
//
LOCUS       DATIQF010000223         3608 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_216119,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000223 DATIQF010000000
VERSION     DATIQF010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3608
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216119"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..481)
                     /locus_tag="VLL95_03510"
     CDS             complement(<1..481)
                     /locus_tag="VLL95_03510"
                     /inference="COORDINATES: protein motif:HMM:NF001911.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HSR37958.1"
                     /translation="MKLTYYGHACFLVEAGGKKLLFDPFIRYNELASSIDVESIGADY
                     VLISHGHQDHVADAVEIAKRNDATIICAFELMDWFHKQGHQKVHPMNTGGKRDFDFGS
                     VKCVVAQHSSVLPDGTYGANPMGFVINTAEGDFYYSGDTALTMDMQLVPLWGKIKFAV
                     "
     gene            641..1888
                     /locus_tag="VLL95_03515"
     CDS             641..1888
                     /locus_tag="VLL95_03515"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HSR37959.1"
                     /translation="MRNLGGSLIFLVIVLLIDFYLFQALKTIGASWSNRTRVTVFGLY
                     WVLCALCIAIFATLPYVQFDQWPKFVRTYLFAMAIGFLMSQILALPFLLIDDLRRLVQ
                     WIISHFLSRNAEAGNEAAEGISRSVFLSWLGLGIGGSLFTSLLYGFRNKYNYQVKQVK
                     LKYTNLPAAFKGFRIVHISDIHSGSFTDVTAVLRGVEIINNQHPDVIFFTGDLVNDRA
                     VEMEPYMQVFNKLTAPFGVFSTFGNHDYGDYTRWENEEAKLANQAKLRGVHAELGWKL
                     LWDESSVLEKEGAKIGVSGVQNISGRRNFHSYGNLEKAARFDEDIPFKILLSHDPSHW
                     DAEVLPKYPEFDLTLSGHTHGMQFGVELPGFRWSPVQWVYKQWAGLYEKGQQRLYVNR
                     GFGFIGYPGRVGILPEITVIELT"
     gene            1939..2970
                     /locus_tag="VLL95_03520"
     CDS             1939..2970
                     /locus_tag="VLL95_03520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37960.1"
                     /translation="MRSKLLLFLTLFTLAFAGNAKAQDSSFTQVMTGIDTTAFYDSIM
                     AELRALGLVGGSRKSFLDINAGIGNGSFALQNNNFNVSTSHIFYNTGIGYYHKSGLSI
                     SSGFNFTNDQGSFKMFQAYVSPAYDYQNKNVAFGIAGFKYFNEKDLNFYVSPLVKEIY
                     SYVVYKKWWLQPKLAIDYAWGTYDELATIKTIDTVRYRRFAPIVRYLSKQNTLAKVSD
                     LAFIFTLRHDFIATPKNNYKQFFRYTPSVLILAGTSTFGTNTPLNSLNSPRLATNTDV
                     QFFRRLYESSLQPPASKFQFQNFNITQSAAYYFSKLYIQGQLVLSYIMPASQSRWNVF
                     YNIGTGINL"
     gene            3037..>3608
                     /locus_tag="VLL95_03525"
     CDS             3037..>3608
                     /locus_tag="VLL95_03525"
                     /inference="COORDINATES: protein motif:HMM:NF024957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HSR37961.1"
                     /translation="MKKILAFSLLLFVSLVGNAQWLKVGPKFGANLQKIDGKDFDEAF
                     QLGYYLGGFAEIGLGKKFYLQPEVLFAETRMNTATEFTSIYRDLLKVDTLRSIKFQSL
                     AIPITLNWRIANILSLSAGPQFSINMNKGESFMRNAEAAITNGDIAMMLGANVMLSKF
                     RVNGRYMWGLKDQSAMEGGNSWKRQTIQLGV"
BASE COUNT          893 a          872 c          877 g          966 t
ORIGIN      
        1 gcaccgcaaa tttgattttt ccccacaggg gcaccaattg catgtccatg gtgagggcgg
       61 tatcgccgct gtagtagaag tcgccctcag ccgtattgat cacgaacccc atagggttgg
      121 ctccataagt accatcgggc agtacactgc tgtgctgcgc caccacgcac tttacgctgc
      181 cgaagtcgaa atcacgtttg cctcccgtgt tcatggggtg cactttttgg tgaccttgtt
      241 tgtgaaacca gtccattagt tcgaaagcgc agatgatggt ggcatcgttg cgcttggcta
      301 tttccactgc atcagccaca tggtcctggt ggccatgcga aatgagtacg taatcggccc
      361 cgatggattc cacatcgata ctgctggcca actcattgta cctgatgaat ggatcgaaca
      421 gtaatttttt acctccggct tcaaccaaaa agcaagcgtg gccgtaataa gtaagtttca
      481 tggcgttgaa tggttagtga ttgaaaacga ttgaagtggc caggcattga aaattctgtg
      541 atgaaagcgg tcttgttttc cgccattcct caaaaatcct ttacccaaag cgctgcaaat
      601 atgcaacttg cagtgttcaa tatcaaagac aaccctcttt atgcgaaatt taggcggctc
      661 actcattttc ctcgtcattg ttctgcttat tgacttctac cttttccagg ccctgaaaac
      721 cattggggcc tcctggagca accgcacccg ggtcaccgtt ttcggcctgt actgggtgct
      781 ttgtgccctg tgcattgcca ttttcgccac cttgccctac gtgcagttcg accagtggcc
      841 caagtttgtc aggacctacc tgtttgccat ggctattggt ttcctgatgt cacaaatcct
      901 ggcccttccg tttttgttga ttgatgatct gcggcgcctg gtgcagtgga tcatttcgca
      961 tttcctgagc cggaacgctg aggcaggcaa tgaagcggca gaaggcatca gccgaagtgt
     1021 ttttttaagc tggctgggcc tgggaattgg cggatcactg ttcacttcgc tgttgtacgg
     1081 gttcaggaac aaatacaatt accaggtaaa gcaggtaaaa ctgaaataca ccaatttgcc
     1141 ggctgccttc aaaggctttc gcattgtgca catcagcgat attcattcgg gcagttttac
     1201 cgatgtaact gccgtattgc ggggggtgga aatcattaat aaccagcatc ctgatgtcat
     1261 tttctttacc ggcgacctgg taaatgacag ggctgtggaa atggagccct acatgcaggt
     1321 atttaacaaa ctgacagcgc ctttcggggt cttcagcact tttggcaacc atgattatgg
     1381 cgactatacc cgctgggaaa atgaagaagc caaactggcc aaccaggcaa aacttcgggg
     1441 ggtgcatgcc gaattgggat ggaaactgct ttgggatgaa agctccgtat tggaaaagga
     1501 aggggccaaa attggcgtgt cgggcgtaca gaatatcagc ggccggcgca attttcacag
     1561 ttatggcaac ctggaaaaag ctgcccggtt tgacgaggac attccgttca agatcttatt
     1621 gagccacgat cccagccatt gggatgccga agtgctgccc aaataccctg aatttgacct
     1681 taccctcagt gggcataccc acggcatgca gttcggggta gagttgcccg gattccgctg
     1741 gagccccgtg cagtgggtgt acaagcaatg ggccggcctt tacgaaaaag ggcaacagcg
     1801 gttgtatgtc aaccgcggtt tcgggtttat tggatacccc ggaagggtgg gtatcttgcc
     1861 cgagattacg gtaattgaac tgacctgacg gttaaaccaa tgaagataaa atgggtcaga
     1921 ggaggcaact ccctgtatat gcgttcgaaa ctccttctgt ttctgaccct ttttacattg
     1981 gcatttgcgg gtaatgcaaa ggcacaggac agcagtttca cccaggtgat gaccggtatt
     2041 gataccaccg ccttctatga ctccatcatg gctgaactgc gggccctggg gttggtaggg
     2101 ggcagccgaa aaagtttcct ggatatcaat gcaggtatag gcaatggatc atttgccttg
     2161 cagaacaaca atttcaatgt gagcaccagc cacatttttt acaacaccgg catcggttat
     2221 taccacaagt cgggtttgtc gatttcttcc gggttcaatt tcaccaacga ccagggatcc
     2281 ttcaaaatgt tccaggcata tgtgtcgcct gcttacgact atcaaaacaa aaatgttgcc
     2341 tttggcattg ccgggttcaa atatttcaac gaaaaggatt tgaattttta cgtgtcgcca
     2401 ttggtaaagg aaatttattc ctacgtggta tacaagaagt ggtggctgca gcccaaattg
     2461 gctatcgatt atgcatgggg cacctatgat gaattggcta ctataaaaac gatagatact
     2521 gttcggtatc gccgctttgc ccccattgtc cgctacctgt caaagcaaaa cacgctggca
     2581 aaagtcagcg atctcgcttt tatatttacg ctgcgccacg attttattgc cactccgaaa
     2641 aataattaca agcagttctt ccggtacact ccttctgtgc tcattttggc aggcacctcc
     2701 acctttggaa ccaatacacc gttgaattct ttgaatagtc cacgactggc taccaatacc
     2761 gatgtgcagt tcttcaggcg gttgtatgaa agcagcctgc aaccacctgc ctcgaaattc
     2821 cagttccaga atttcaacat tacgcaatct gctgcctatt atttcagcaa gctctacatc
     2881 cagggccagc tggtgctatc ttacatcatg cctgcctccc aatcaaggtg gaatgttttt
     2941 tacaacattg gtacgggtat aaatttgtaa tatgctaaca aataatttgt agcattttgc
     3001 cggtacccat cgtttcagag aaacaatcac cgcactatga aaaagatcct ggccttttct
     3061 ctcctccttt ttgtttcctt ggttggtaat gcgcaatggc tgaaagtagg gcctaagttt
     3121 ggcgccaatt tgcagaagat agatggcaaa gattttgacg aagcattcca gttgggttac
     3181 tacctgggtg gatttgctga aataggattg ggaaagaaat tctacctgca gcccgaagtg
     3241 ctttttgccg aaaccagaat gaataccgcc actgaattca ccagtattta ccgtgattta
     3301 ttgaaggtcg atacgctgcg ttctatcaag tttcaatcgc ttgccattcc cattaccctc
     3361 aactggcgca ttgccaatat cctgtcgctg agtgcggggc ctcagttcag catcaacatg
     3421 aataaagggg agtctttcat gcgaaacgct gaagccgcca ttaccaacgg tgatatagcc
     3481 atgatgctgg gtgccaatgt catgctcagc aagttcaggg tgaatggccg gtacatgtgg
     3541 ggcctcaaag accaaagcgc catggagggc ggcaattcct ggaaacgcca gaccattcag
     3601 ctgggtgt
//
LOCUS       DATIQF010000224         2846 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_125017,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000224 DATIQF010000000
VERSION     DATIQF010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2846
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125017"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..279
                     /locus_tag="VLL95_03530"
     CDS             <1..279
                     /locus_tag="VLL95_03530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37962.1"
                     /translation="IFLDKNVKDKWGLPVLAMDVELKDNELKMRQDMMNDAAEMLEAA
                     GIKDVRPYNDDYGVAWAYMKWEQPEWVVIPRPVYSTATTRYGTARTYL"
     gene            207..395
                     /locus_tag="VLL95_03535"
     CDS             207..395
                     /locus_tag="VLL95_03535"
                     /inference="COORDINATES: protein motif:HMM:NF017050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC oxidoreductase"
                     /protein_id="HSR37963.1"
                     /translation="MGRDPKTSVLNGNNQVWDCQNVFVTDGACMTSGGCVNPSLTYMA
                     LTARAADYAVSELKKGNL"
     gene            475..2151
                     /locus_tag="VLL95_03540"
     CDS             475..2151
                     /locus_tag="VLL95_03540"
                     /inference="COORDINATES: protein motif:HMM:NF012935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HSR37964.1"
                     /translation="MPQTFDAIVVGSGISGGWAAKELCEKGLKVLLLERGRNFEHIKD
                     YKTASKDPWDFEHRGQTTQAQHEAYPVIHRGWAASEAVMDYWANEKDCPYVEDKPFTW
                     WRSYQLGGRSILWGRQSYRWSDLDFEANLKDGIAVDWPIRYKDIAPWYDYVETFAGIS
                     GSKEGLPQLPDGQFLPPMELNCVEKDVAARLKEHYKGNRHLIIGRTANLTAPIPGRTK
                     CQFRARCWEGCPFGGYFSSQSSTLPAAQATGNLTIRPWSIVTRVLYDKDTQKAKGVEV
                     MDAENKKTIEFHSKLVFLCASALNSTWILLNSAKDIWPGGLGSSSDQLGHNVMDHHYN
                     LGASGMVEGFEDKYYFGRRANGFYIPRFTNLNGDKRSYLRGFGYQGGASREGWQRSVA
                     ELSVGAAFKEAITEPGSWKIGMTGFGEILPDHSNRIYLHGTQKDKWGLPVLAMDAELK
                     QNELEMRKDIVAEAKAMLEAAGVKEVDTWDKGHAMGHGIHEMGTARMGRDPKTSVLNE
                     WNQVWDCKNVFVTDGACMTSSACQNPSLTYMALTARAADHAVKELKKGNL"
     gene            2193..2762
                     /locus_tag="VLL95_03545"
     CDS             2193..2762
                     /locus_tag="VLL95_03545"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HSR37965.1"
                     /translation="MDRRKALQNVALLLGGTIVGGSLFLQTGCKSSAKKINDLFDEDQ
                     VKFLDEVAETILPKTNTPGAKDAAVGAFMALMVKDCYTAENQQVFLKGLEDIDKLSQE
                     KFSSDFMDITAAQRTELLTALDKEQKEYQKNKKKEEPSHYFRMMKELTLLGFFTSEVG
                     ATKALRYVAVPGKYEGCVDYKKGDRAWAS"
BASE COUNT          814 a          674 c          760 g          598 t
ORIGIN      
        1 atcttccttg ataagaatgt gaaagacaaa tgggggttac ctgtgctggc catggacgtt
       61 gagttgaaag acaatgaact gaaaatgcgc caggacatga tgaacgacgc tgccgaaatg
      121 ctggaagcag ctggcataaa agatgtgcga ccatacaacg atgactatgg ggtggcatgg
      181 gcatacatga aatgggaaca gcccgaatgg gtcgtgatcc caagaccagt gtactcaacg
      241 gcaacaacca ggtatgggac tgccagaacg tatttgtgac cgacggcgcc tgcatgacca
      301 gtgggggctg tgtgaacccc agccttacct acatggcgct tactgcccgt gcagctgact
      361 atgccgtgag tgaattgaag aaaggaaacc tgtaaggaaa atgctgaatg atgaatgatc
      421 attttggaaa ccaggaactt acctaactaa taaccatcat aaaacctctt ctcaatgcct
      481 caaacattcg atgccatagt ggtaggtagc ggaatcagcg gaggctgggc tgcaaaagag
      541 ctttgcgaaa aaggactgaa agttttgctg ctcgaaagag ggaggaactt tgagcacatc
      601 aaagactaca agaccgcttc gaaagatccc tgggattttg agcaccgcgg acaaaccacg
      661 caggcgcaac atgaagccta cccggtcatt catcgtggat gggcggccag cgaagcagtg
      721 atggattatt gggccaatga aaaagactgt ccctacgtgg aagacaagcc ctttacctgg
      781 tggcgcagtt accagttagg cggtcgatcc attttgtggg gccgccaaag ctatcgctgg
      841 agtgacctcg attttgaggc caacctgaag gatggtattg ctgttgactg gccaatacga
      901 tacaaggata ttgccccctg gtatgattat gtagaaacat ttgccggaat cagtggcagt
      961 aaagaaggac tgccacaatt gcccgacgga caatttctgc cccccatgga gctgaattgc
     1021 gtggagaaag atgtggcggc acgattgaaa gaacattaca aaggcaacag gcacctgatc
     1081 attggacgaa ccgccaacct gacggcaccc attcccggca gaacaaaatg ccagttcagg
     1141 gcccggtgtt gggaaggttg tccattcgga gggtatttct cttcgcagag ttctaccctg
     1201 ccggctgcac aagctaccgg caatctcacc attcgtccct ggtccattgt tacccgggtg
     1261 ttgtacgaca aagacacgca gaaagcgaag ggcgtggaag tgatggacgc ggaaaacaaa
     1321 aaaaccattg aattccattc aaaactggtt tttctctgcg catcggcact caacagtacc
     1381 tggatcctgt tgaattcagc caaagacata tggccgggcg gcctcggcag cagcagcgat
     1441 cagttaggtc acaacgtaat ggatcaccat tacaacctcg gtgccagcgg catggtagaa
     1501 ggctttgaag acaagtacta ctttggccgt cgtgccaatg gattttacat ccctcgcttc
     1561 accaacctca atggcgacaa gcgctcctac ctgcgtggat ttggctacca gggtggcgcc
     1621 agccgagagg gctggcaacg atccgtagca gagttatctg taggagctgc cttcaaagag
     1681 gcgattactg aacccggttc gtggaaaatt ggcatgacgg gctttggcga aatactgccc
     1741 gaccacagca accgcattta cctgcatggc acacaaaaag acaaatgggg attgcctgtg
     1801 ctggccatgg atgcagaact gaagcaaaac gaactggaaa tgcgcaagga tattgtggcc
     1861 gaagcaaagg ccatgctgga agccgcaggc gtgaaagagg tggatacatg ggacaaaggc
     1921 catgccatgg gtcacggcat tcacgaaatg ggaacagccc gcatgggccg ggaccccaag
     1981 accagtgtgc tgaatgaatg gaaccaggtg tgggattgta agaatgtatt tgtaacagac
     2041 ggcgcttgca tgaccagttc tgcctgccaa aacccttcct taacttacat ggcacttacg
     2101 gcccgggcgg cagaccatgc tgtcaaggaa ttgaaaaaag gaaatctttg aaccggacga
     2161 tctcattaaa cataaaacat caaatttgaa atatggacag aagaaaagcc cttcagaatg
     2221 tagcactcct gcttggtggt accattgtgg gtggtagttt gtttttacaa accggctgca
     2281 aatcatcagc caaaaaaata aatgacctgt ttgatgaaga ccaggtgaaa ttcctggatg
     2341 aagtggcaga aaccattttg cctaaaacca atacgccggg cgccaaagac gccgcagtgg
     2401 gcgctttcat ggcgctgatg gtaaaggatt gctacactgc cgaaaaccag caagtgttcc
     2461 tgaaaggcct ggaagacatt gacaagctca gccaggaaaa atttagcagc gactttatgg
     2521 atattacagc ggcgcaacgc accgaactcc taaccgcttt ggacaaagag cagaaagagt
     2581 atcagaaaaa caaaaagaag gaggaacctt cccactactt ccgcatgatg aaagaactca
     2641 ccctgctggg attctttact tcggaagtgg gcgccaccaa ggctttgcgc tacgtagcag
     2701 tgcccggcaa gtatgaaggc tgtgttgatt acaagaaagg cgaccgggcc tgggccagct
     2761 aagttctgca ctgcctcctg tttacaacaa gtgattcttg gccttcggtt ttcgaaggcc
     2821 tttttcttgc gatcaaacct gccata
//
LOCUS       DATIQF010000225         2054 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_292117,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000225 DATIQF010000000
VERSION     DATIQF010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2054
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292117"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            233..784
                     /locus_tag="VLL95_03550"
     CDS             233..784
                     /locus_tag="VLL95_03550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37966.1"
                     /translation="MTNTVRKVFKIIGLILLILIIAIIGFYLYLTDFGRKNILSTEPR
                     RPKLEIPVTYNIGWWSDQKALSIDSLSIDIVESKLNLFNSKSLIAYTVIGTLTYKGHW
                     QPEIDAIHISERLNLDTTLHCDRIIEITPVIKDKSNDKVNGGTDKFEFRNEHTITSNH
                     WGINRIKFICGNKEKTIELRQSK"
     gene            1178..1450
                     /locus_tag="VLL95_03555"
     CDS             1178..1450
                     /locus_tag="VLL95_03555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37967.1"
                     /translation="MANVMVVITLSDSGIETIKSNPELPKKEMEFVNQWKEEHILEQF
                     FISVSRKDAVLIFQNVDEAQTRELIESLPYFPYMSKIEYHQLNRQF"
     gene            complement(1531..>2054)
                     /locus_tag="VLL95_03560"
     CDS             complement(1531..>2054)
                     /locus_tag="VLL95_03560"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR37968.1"
                     /translation="LPAGRPILFARPEPLEAIPNGWKLRHAIAGVKMIHHGRTAASPS
                     FDAVQPLQAEHIPAMIALTRLTRPGPFASRTIEFGGYHGIFINGALAAMTGQRLHVGN
                     YTEVSAVCTHPDHLGKGFATLLLQHQLHLILAKGQQPFLHVRADNERAIGVYERLGFT
                     ISRPMEFYFMERE"
BASE COUNT          650 a          424 c          459 g          521 t
ORIGIN      
        1 aatcacagca ggtaacattg catttgtgtt atgtcggcgg acagacaacg ccatctcaac
       61 ttcagttatc tatcgtctgt agttctgggc tggacgttat aaattgagca atagaattaa
      121 caatgaactt ttgtaatttc aatcagcatt tgtaccaagc tgacggattt caaattccgc
      181 cacaaacaca aatgcttcta cgttgtgcgt aatgttatgc aacactctac aaatgacaaa
      241 tactgtaagg aaagttttta aaataatcgg actcatactg ttgattttaa taatagccat
      301 cattggattt tatttatact tgacagactt tggccgaaaa aatattttat cgacagagcc
      361 aaggcgacca aaattagaaa tcccagtaac ttataatatt ggatggtggt cagaccaaaa
      421 ggctctttct attgacagcc tttcaattga catagttgaa agcaaattga atctgttcaa
      481 tagtaaatca ttgatagctt atacagtaat aggaactttg acttacaagg gacactggca
      541 accagaaatt gatgcaattc atatttcaga gcgacttaac cttgatacaa ctttacattg
      601 tgacagaatt attgaaataa cacctgttat caaagacaaa agcaatgata aagtaaatgg
      661 tgggacagat aaatttgagt tcagaaatga acatacaata acctcaaatc attggggaat
      721 aaatcgtatt aaattcattt gtggaaacaa agaaaagact attgaattga gacaaagcaa
      781 gtaaaaaaca ctacttgcaa aagaggtttt ttgcaagtat ggcttgacgg aagagcaatc
      841 ggcagaagaa tacaattcaa gtttagttcc aactttacgg aatactgtta agcgacaaca
      901 gtaaacaaaa atagagaagc aagaattagg cttgacggtt taggcggacg gaattctagt
      961 gccacacctg cacaaagcct tgtacattgg ttttacaatc ttccgattga gcgccataga
     1021 actttcgcat aggtatagga agcatgaact ttacccccgc tccataaaat aaaacgccat
     1081 cggcaaacag atgcacttga taatgatcgc atacctttag gcgcagcaac ctgtttttgg
     1141 gtggctacaa acagcaatag cattaaaaca aacagacatg gctaacgtaa tggttgtaat
     1201 tacactttcc gacagcggca ttgagaccat caaatccaat cctgaattgc cgaagaagga
     1261 aatggagttc gtgaatcaat ggaaggagga gcatatcctg gagcagtttt ttatttccgt
     1321 gtcaagaaaa gacgcagtgc tgatctttca aaatgttgat gaggcccaaa ccagggaact
     1381 gatagagagc ctgccatact ttccttacat gtcaaaaatt gaataccatc aattgaacag
     1441 gcagttttaa actaattgaa cgcaacagcc aagacttctc cgtacttgta ccgggagtat
     1501 tccataaaat gtgtgattgt gaagtaggct tcactcccgc tccataaaat aaaactccat
     1561 tggccggctg atggtaaagc ccagccgttc atacacgcca atggcccgct cgttatctgc
     1621 ccgcacatgc aggaagggtt gttgaccttt tgccaggatg agatgcaact ggtgttgcag
     1681 caaaagtgtg gcgaagcctt ttcccaaatg atcgggatgg gtgcacacgg cactcacttc
     1741 cgtatagttt cctacgtgca ggcgctggcc ggtcatggcg gcgagggcac cgttgatgaa
     1801 gatgccgtga taaccgccaa actcgatggt gcggctggca aaaggcccgg gccgggttag
     1861 gcgggtgagg gcgatcatgg ccggaatgtg ttcggcctgc agcggctgca cggcgtcgaa
     1921 tgaaggagag gcagctgtcc tgccgtgatg tatcattttc acacccgcaa tggcatgccg
     1981 cagtttccaa ccgttaggta tagcctccag tggctccggg cgggcaaaca aaattggccg
     2041 cccggcaggc agca
//
LOCUS       DATIQF010000226         2143 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_292148,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000226 DATIQF010000000
VERSION     DATIQF010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292148"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..604
                     /locus_tag="VLL95_03565"
                     /pseudo
     CDS             3..604
                     /locus_tag="VLL95_03565"
                     /inference="COORDINATES: protein motif:HMM:NF012403.4"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140658 - ATP-dependent chromatin
                     remodeler activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SNF2-related protein"
     gene            716..1213
                     /locus_tag="VLL95_03570"
     CDS             716..1213
                     /locus_tag="VLL95_03570"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C-terminal helicase domain-containing protein"
                     /protein_id="HSR37969.1"
                     /translation="MLIAELQQIIPAHKALVFSQFTSMLDLLGRDLQKAGIRFLRLDG
                     STAANERQSLVNAFQQDDADTHVFLISLKAGNTGLNLTAADYVFLFDPWWNVAVENQA
                     IDRTHRIGQTSHVFAYRLICKNTVEEKIMVLKDRKRKISDELVSTDDGLMQSLTMEDV
                     AFLFS"
     gene            complement(1463..1816)
                     /locus_tag="VLL95_03575"
     CDS             complement(1463..1816)
                     /locus_tag="VLL95_03575"
                     /inference="COORDINATES: protein motif:HMM:TIGR00049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HSR37970.1"
                     /translation="MSVALDNAITVSDKAKKKVDALMAEAGIGSDPSYFLRVSVVGGG
                     CSGLTYKMDFDNEQKPMDQVFEDKGLKLVCDLKSFLYLVNTELDFSDGLNGKGFYFNN
                     PNASRSCGCGESFAV"
BASE COUNT          567 a          509 c          511 g          556 t
ORIGIN      
        1 tcatgtacaa ctggcagcag gaatgggaaa agtttgcccc cgcggtgaag gtgcatattt
       61 accacggcag ccagcgacaa gcagccgtca tcagcaacca ggaaatacaa gtgatcatca
      121 ccagctatgg caccgcccgg caggatatcg ccttactggc tgaagaattg ttcgatacaa
      181 ttgtggtgga tgaaagccat tacatcaaaa acccggctgc gcaaatcacg agggctgtga
      241 gtgacctgcg aggaatggta cgcattgcgt tgagcggcac cccggtcatg aatggcacca
      301 acgatttgtt tgcgcaattc aacttcctgc tgccgggctt gctgggcaac cgcgaattct
      361 ttcgccgcga gtacgcttac cccatcgacc aattgcggga tgaagagaaa gcacaagcac
      421 tgcaaaaact cattgcccat ttttactgcg tcgaaccaaa gagcaggtgg cacccgacct
      481 gccgcccaaa gtggaaagtg tgatctggtg ccacatggac accgaccagc gcatggctta
      541 cgaaagcatc aaggaaaaag tgcgcagcag tgtgctgctc gatattgagc agaaaggttt
      601 ggacaaagga aaaatgtcta tcctggcggg actcaccaaa ctgcgccagg tatgcaacag
      661 tgctgaattg gtgaaggatg aagatgtgtt tgcctacgac agtgtgaaaa ctgaaatgct
      721 gatcgcagaa ttgcagcaga tcattccggc acacaaggca ctggtgtttt cgcaattcac
      781 cagcatgctc gacctgctgg gtcgagattt gcaaaaagcc ggcatccgct ttttacgcct
      841 ggatggcagc accgctgcca acgaaagaca atcgttggtg aatgctttcc agcaagatga
      901 tgccgatacg catgttttcc ttatcagcct caaagccggc aacacaggtc tcaacctcac
      961 ggccgctgat tacgttttcc tttttgatcc gtggtggaat gtggctgtcg aaaaccaggc
     1021 catcgaccgt acccatcgca ttggccaaac cagccatgtg tttgcctacc ggctcatttg
     1081 caaaaacacc gtggaagaaa agatcatggt gttgaaagat cgcaaacgaa aaatatcgga
     1141 cgaactggtg agcacagatg atggactgat gcagagtttg acgatggagg atgtggcgtt
     1201 cttgttcagt tgagttttct tacaaaccac ggaggattgg aaggtttgca aagaggtgag
     1261 gcagtttttt gtttttggtt tatagttttt tgtttcggga tctgtagtta gggttgcttc
     1321 atccgtattg ctgtctcaaa tagaatgcca caggcatgca ttataagctc tttgtactct
     1381 gtgtaaatcc tccttcgcct ctgtggtaaa aaaaaagcca acggctctca ccattggctt
     1441 tccctatcaa aatttgaaat aattacacgg cgaaactttc accgcaacca cagctgcggc
     1501 tggcgttggg gttattgaag tagaagcctt tgccattaag gccatcgctg aaatcgagtt
     1561 cagtatttac caggtacaaa aagcttttca ggtcgcaaac caatttcagg cctttgtctt
     1621 caaacacctg gtccataggt ttctgctcgt tgtcgaaatc cattttgtag gtgaggccgc
     1681 tgcagccacc gcccactacg cttacccgca ggaaatagct ggggtcgctg ccaataccgg
     1741 cttctgccat caaggcatcc acttttttct ttgccttgtc gcttacggtg attgcattat
     1801 ctagtgctac gctcatgagt tgctcctttg tgaaacagtg atgatcaaat tccgttccgg
     1861 cgcaacaact tttaagatac ttgtgaaaat ttggcttaac gaatgattac accattcaga
     1921 atctggcttt ccgaaaaatc gaaaacagta ctcatttgac tgcttaggat aatttagttg
     1981 ttcaccaagt gtattttaag cggaaattct gctgtagcat ttcaaacctc catgtcattc
     2041 tttaaacaac acgcatggat gacatccttg aggtcacctt aacacacggg tatttattaa
     2101 atgctctttt taacaacgag cgatgatgta tcctgttcat ctt
//
LOCUS       DATIQF010000227         1907 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_18598, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000227 DATIQF010000000
VERSION     DATIQF010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1907
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18598"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..720)
                     /locus_tag="VLL95_03580"
     CDS             complement(<1..720)
                     /locus_tag="VLL95_03580"
                     /inference="COORDINATES: protein motif:HMM:NF017634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lycopene cyclase family protein"
                     /protein_id="HSR37971.1"
                     /translation="MKILDVGGVAHPGIVVSLTSTRGTTIQHFDYIIIGAGCAGLSLA
                     VRLASDSAFIDKQILLLERAPKSLNDRTWCFWENHAGYFDAMVHHRWNDLWVKHPMGE
                     KQLELQGYAYKMIRGIDFYRHCFKILSEAPNIKIHYGAVTNVDAAKGEVTSTDSVFTA
                     EHIFSSVLLQQPALQPGEFYLLQHFRGWWIEIDTDFFNPGAADLMNFRTDQQHGCAFM
                     YVLPVSKRKALVEYTLFTEEEL"
     gene            complement(720..1187)
                     /locus_tag="VLL95_03585"
     CDS             complement(720..1187)
                     /locus_tag="VLL95_03585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37972.1"
                     /translation="MWILITLGTFGLMEAITWATHKYVMHGFLWYLHEDHHNPRGHAF
                     EKNDAFFLIFAIPSWLCIMLGLQNQVYWVAAIGFGIAMYGLAYFLVHDVIIHQRFKWF
                     TRSNNTYVRTIRWAHKMHHKHIGKEHGESVGMLYVARMYWDKVRADKKRLQNG"
     gene            complement(1277..>1907)
                     /locus_tag="VLL95_03590"
     CDS             complement(1277..>1907)
                     /locus_tag="VLL95_03590"
                     /inference="COORDINATES: protein motif:HMM:NF016155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carotenoid biosynthesis protein"
                     /protein_id="HSR37973.1"
                     /translation="IAIGLLHVDLFVKLTPVNLLVCLALVLYTQEKINAGFLVFTAFA
                     FIVGFLAEYIGVNTGYLFGDYSYGTVLGVKWQGVPWMIGVQWIVTMYCVGVAMHMLQE
                     RFMKNPMSQFHRFPQWWKGMSLVIDGALLAVVFDWVIEPVAVHLGYWNWHQGDIPFFN
                     YASWYVVSLVILFVFHKMPFPKANLFAIHLLLIQFMFFLLLRTAIKFGW"
BASE COUNT          523 a          497 c          432 g          455 t
ORIGIN      
        1 caattcttct tcggtaaaca gggtgtattc caccagcgct tttcgcttgc tcaccggcag
       61 cacatacata aaggcacagc catgctgctg atcagtcctg aagttcatca ggtctgccgc
      121 tccgggattg aaaaaatcag tgtcgatctc gatccaccag ccacggaaat gctgtaacaa
      181 ataaaactct ccgggttgca gcgccggctg ttgtagcaat accgaggaga aaatatgctc
      241 cgccgtgaaa acactgtcag tgctggttac ttcccctttg gctgcgtcaa catttgtaac
      301 agcaccgtaa tggattttta tgttgggtgc ctcgctgagt attttgaaac aatgccggta
      361 gaagtcaatc ccccggatca ttttgtaggc atacccttgt agttcgagtt gcttttcgcc
      421 catcggatgc ttcacccaca aatcattcca gcgatgatgc accatcgcat cgaagtagcc
      481 tgcatgattt tcccagaaac accaggtcct gtcgttgagg cttttgggcg ctctttccaa
      541 cagcaggatc tgcttgtcga tgaatgcgct atcggaggcc agccttactg ccagcgacaa
      601 gcctgcacat cctgcgccaa tgattatgta atcgaaatgc tgaatagtag taccccgtgt
      661 tgaagtgagt gacacaacga tgccgggatg tgctacaccg ccgacatcca atattttcac
      721 tagccgtttt gaagacgctt cttatcggcc cgcactttgt cccagtacat cctggcaaca
      781 tagagcatgc cgacgctttc gccatgctcc ttgccaatgt gcttgtgatg cattttgtgt
      841 gcccagcgaa tggtgcgcac ataggtattg ttgctgcggg taaaccattt gaaacgctgg
      901 tgaataatga catcatgcac caggaaataa gcgagcccgt acatggcaat accaaatcca
      961 atggcagcta cccaatacac ctggttttga aggcccagca taatacaaag ccaactgggg
     1021 atggcgaaaa tgagaaagaa ggcgtcgttc ttctcaaacg catggccgcg tggattgtgg
     1081 tggtcctcat gcaggtacca caaaaaaccg tgcatcacgt atttatgcgt ggcccaggtg
     1141 atggcttcca tcagcccaaa ggttcccagc gttattaata tccacaaact ccagtgcata
     1201 gtatttgatc aaaatctaaa tgttcgggaa agttaatgct attgccgctg cttaatgaca
     1261 ccagtactgt tttcaattac catccaaact taatggcggt gcgaagcagc aggaaaaaca
     1321 taaactggat caacaacaaa tgtattgcaa agaggtttgc cttgggaaaa ggcattttgt
     1381 gaaaaacgaa taaaataaca aggcttacaa cataccaact ggcataattg aagaagggga
     1441 tatcaccctg gtgccagttc caatacccga gatgcacagc caccggctct attacccaat
     1501 cgaataccac tgccagcaag gcgccatcta tcaccaggct cattcctttc caccattgcg
     1561 gaaagcgatg aaactggctc atggggtttt tcatgaaccg ctcctgcagc atgtgcatgg
     1621 ccacgcccac gcaatacatg gtcacgatcc attgtacgcc aatcatccag ggcacgccct
     1681 gccattttac acccagtacg gtgccatagc tgtaatcgcc aaacaagtac ccggtattca
     1741 cgccaatata ttcggccaga aaacccacta taaaagcgaa ggcggtgaaa actaagaagc
     1801 cggcattgat tttctcctgc gtgtacaaca ccaatgccag gcataccagc aggttgacgg
     1861 gggtgagttt cacaaacaaa tccacatgca gcaggccaat ggcgatg
//
LOCUS       DATIQF010000228         4035 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_64109, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000228 DATIQF010000000
VERSION     DATIQF010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4035
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64109"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..442
                     /locus_tag="VLL95_03595"
     CDS             <1..442
                     /locus_tag="VLL95_03595"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR37974.1"
                     /translation="NESNTRKQIALPFLSFGSDAASYPHEGVFLQNSQHPRANGNVAR
                     LLGKYVRDEKVIPLQEAIRKLTSLPATNLKLQKRGQLKPGYFADVVVFDPATIQDHAT
                     FEKPHQYATGVAHVWVNGVQVLKEGEHTKAMPGRALKGPGFKEN"
     gene            453..905
                     /locus_tag="VLL95_03600"
     CDS             453..905
                     /locus_tag="VLL95_03600"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR37975.1"
                     /translation="MSIIIRRATKEDCPRLLELVRELAVYEKAPNEVTVTLEHFTESG
                     FGPNPVWWAFCAEENGIVQGFALYYIRYSTWKGQAMYLEDILVTESMRGRGMGKLLFD
                     RLIVEAKEKGFNRMVWQVLEWNEPAINFYKKYGANFDAEWVNCSIDIS"
     gene            complement(973..1854)
                     /gene="fabD"
                     /locus_tag="VLL95_03605"
     CDS             complement(973..1854)
                     /gene="fabD"
                     /locus_tag="VLL95_03605"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: protein motif:HMM:TIGR00128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HSR37976.1"
                     /translation="MSKHAFVFPGQGAQFSGMGKQLYESSAEAKEIFEQANEILGFRI
                     SDIMFSGSEEELKQTKVTQPAVFLHAYVAFKVLANATPDMVAGHSLGEFTALVANQCL
                     SFEDGLKLVQARAFAMQHACEKEPGTMAAILGLDDSKVEEVCAGIEEVVVAANYNCPG
                     QLVISGSLKGIEVACEQLKAAGAKRALPLPVGGAFHSPLMRHAEEELVAAIEAATFHT
                     PICPVYQNVVAAGVTAPTEIKTNLIHQLTGPVKWTQCVQAMIADGATQFTECGPGKVL
                     QGLVQKINKEVAVNGLT"
     gene            complement(1932..2528)
                     /gene="folE"
                     /locus_tag="VLL95_03610"
     CDS             complement(1932..2528)
                     /gene="folE"
                     /locus_tag="VLL95_03610"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: protein motif:HMM:NF006826.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HSR37977.1"
                     /translation="MAYQKKEQYDDKTTIELAKAYTQTLALLGEDPHREGLVKTPERV
                     AKAMQYLTQGYQQDAERILNSAKFHEDVSEMVIVKDIELYSLCEHHILPFVGKAHVAY
                     IPNGYITGLSKIARVVDVFARRLQVQERLTTQILDAIEKALQPLGVAVVIEASHFCMM
                     MRGVSKQNSVTTTSAFSGEFRNETTRSEFLRLIASDLR"
     gene            complement(2558..3373)
                     /locus_tag="VLL95_03615"
     CDS             complement(2558..3373)
                     /locus_tag="VLL95_03615"
                     /inference="COORDINATES: protein motif:HMM:NF014609.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HSR37978.1"
                     /translation="MNLPIYQVDAFTNEVFRGNPAAVMPLKEWIPEDLMQQIAMENNL
                     AETAFFVPLYPGDSGGADYHIRWFTPTLEIDLCGHATVAAAFVISECLKTEEKKIRFS
                     TEKVGILEVTVEEDWYLLDFPSRMPEPVAEPALLYKALGIDHIKEVLVSRDYFVVLEN
                     EAAVRDLKPDFSLLKQLDRMGVIVTAKGDVADAVSRCFYPKAGIDEDPVTGSAHCNVV
                     PYWSRQLGKKQLVCRQISSRGGELVCEDRGERVILGGQAVLFMKGEVHLQWQE"
     gene            complement(3375..3995)
                     /locus_tag="VLL95_03620"
     CDS             complement(3375..3995)
                     /locus_tag="VLL95_03620"
                     /inference="COORDINATES: protein motif:HMM:NF015423.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HSR37979.1"
                     /translation="MPVFDFLFIIDVLGTAAFAISGARQAIDRRLDVFGVIIIAFVTA
                     IGGGTLRDLLIGNTPVSWMRNELIISVILVSAIGTMLVEGVQHKLAGTLFLFDSLGLG
                     LFTIAGMDMALQFGFSPGMAVALGTISACFGGVIRDVLLNKVPLIFQKEIYASACIAG
                     GLLYLLLQQWHLQERVSEVICIIFIVAIRVVAVKKQLSLPPVRKKD"
BASE COUNT         1005 a         1070 c          990 g          970 t
ORIGIN      
        1 gaatgaaagc aatacccgca agcagatcgc cttgccattt ctgagttttg gcagcgacgc
       61 ggcttcttac ccgcatgagg gggtgttcct gcaaaacagt cagcatcccc gtgccaatgg
      121 caacgtggcc cggctattgg gcaaatatgt tcgcgatgaa aaagtgatac cgctgcagga
      181 agccatccgt aaactgacca gcctgcctgc cactaattta aaattgcaga aacgcggtca
      241 actgaaaccc ggttattttg ccgacgtggt ggtgtttgat ccggccacca tccaggacca
      301 tgcaactttt gaaaagccac accaatatgc cacgggtgtg gcacatgttt gggtgaatgg
      361 cgtacaggta ctgaaagagg gtgaacacac caaagccatg ccgggcaggg ctttgaaagg
      421 gccggggttt aaagagaatt aatcatagta atatgtcgat catcatcaga agagctacga
      481 aagaagattg cccccgcctg ctggaactgg tacgtgaact ggcagtatat gaaaaagccc
      541 ccaacgaggt aaccgttacg ctggaacact ttactgaaag cggctttggc cccaacccgg
      601 tgtggtgggc cttctgtgca gaagaaaacg gcatcgtgca gggttttgcc ctgtattaca
      661 tccgctacag tacctggaag ggccaggcca tgtatctcga agacatcctg gtgacggaaa
      721 gcatgcgagg caggggcatg ggcaaactgt tattcgacag gttgattgtg gaagccaaag
      781 aaaaaggctt caacaggatg gtgtggcagg tattggagtg gaatgaacct gctatcaatt
      841 tctacaaaaa gtacggggcg aatttcgatg ctgagtgggt gaattgcagc attgacattt
      901 catgatggtt acagaaaatg aagaaagcgg ttgttccgag gagcaaccgc tttctttttg
      961 caacaggttc gatcaggtca aaccattgac agctacttct ttattgatct tctgcaccag
     1021 cccctgcaaa actttgccgg gcccgcactc tgtaaactgg gtagcgccat cagcaatcat
     1081 ggcctgcacg cattgcgtcc attttacagg gcctgtcaac tggtggatca ggttcgtctt
     1141 aatttcagtc ggagcagtta cgcccgcagc caccacgttt tggtataccg ggcaaatggg
     1201 cgtgtggaaa gtggcggctt caatagcagc caccagctct tcttcggcat gccgcattag
     1261 cgggctgtga aaggcgcctc ccacaggcaa gggtaatgcc ctcttggccc ctgctgcctt
     1321 tagttgttcg caggccactt ctatgccctt taatgatccg ctgattacca actggccggg
     1381 acagttgtaa ttcgctgcta ccaccacttc ctcaatgccg gcacacactt cttccacttt
     1441 gctgtcatcc agccccagta tggctgccat cgtgccgggc tctttttcac aggcatgctg
     1501 catggcaaag gcacgggctt gtaccagttt caaaccgtct tcaaacgaaa gacactggtt
     1561 ggctaccaac gcagtgaact ctcccaacga atggccggcc accatatcag gcgtggcatt
     1621 ggccaatact ttgaaagcaa cataagcatg caggaatacc gcaggctgtg tcactttggt
     1681 ttgcttcaac tcttcctcac ttccactgaa catgatgtcg gaaatgcgga aaccaagtat
     1741 ttcattggcc tgctcaaaaa tttcttttgc ttcggcactg ctttcgtaaa gctgcttgcc
     1801 catgccactg aactgggcac cctgaccggg aaaaacaaag gcgtgtttgc tcatatgcaa
     1861 taaaatgagg ggcaaatatg gcgaataatc gcggttgcaa atacattaag gctttggcct
     1921 gctggtgaag tttacctgag atcagaagca atcaaacgca aaaattcact gcgggtggtt
     1981 tcgttgcgga attcgccact gaacgctgaa gtggtggtta ctgaattctg tttgctcacc
     2041 ccccgcatca tcatgcagaa atggctggct tcaatcacca ctgccacgcc caaaggttgc
     2101 agtgcctttt cgatggcatc cagtatttgc gtggtgaggc gctcctgcac ctgcagccgg
     2161 cgggcaaaca catcaaccac ccgggctatt ttgctgagac cggtaatgta cccattggga
     2221 atgtaagcca catgcgcttt gcccacaaag ggcagtatgt ggtgttcgca gaggctgtac
     2281 aattcaatgt ccttcacgat caccatttcg cttacgtctt catggaactt cgcggaattc
     2341 aggatgcgct ctgcatcctg ctgatagccc tgcgtcaggt attgcatggc cttggccaca
     2401 cgctctggcg tttttaccaa cccttcccgg tgcggatctt cacccaacag ggccagggtt
     2461 tgcgtatagg cttttgccag ttcaatggtt gttttgtcgt cgtactgctc ttttttctgg
     2521 tatgccattt ttctgcatta tggatgcacg taaatattta ttcctgccac tgcaaatgca
     2581 cttcgccttt catgaacaac accgcctgtc ctcccagtat cacccgctcg ccgcggtctt
     2641 cacaaaccaa ctcgccgcca cgggatgaaa tttgccggca caccagttgt ttcttaccca
     2701 gttgccggct ccagtacggt accacattac agtgcgcact gccggtaacg ggatcttcat
     2761 caatgccggc cttgggatag aagcaacggc tcaccgcatc ggccacatct ccctttgcgg
     2821 ttactattac acccatgcgg tccagttgtt tgagcagcga gaaatcaggc ttcaaatcac
     2881 gcaccgctgc ttcattttca agcacaacaa aatagtcgcg gctcaccagc acttccttaa
     2941 tatgatcaat gcccaaagcc ttgtacaaca aagccggctc ggctactggt tcgggcattc
     3001 tggaaggaaa atccaacaag taccaatctt cttcaactgt cacttccaga attcccactt
     3061 tctcagtact gaatcggatt ttcttctcct ccgttttcaa gcattcactg atcacaaaag
     3121 cggcagctac cgttgcatgg ccacacaggt caatttcaag cgtgggtgta aaccatcgga
     3181 tatggtaatc ggcaccaccg ctatcgcccg gatacaacgg cacaaaaaag gcggtttctg
     3241 ccaggttgtt ttccatggct atctgctgca tcaggtcttc cggtatccat tctttcaaag
     3301 gcatcaccgc ggcagggttg ccacgaaaca cttcattggt aaaggcatcg acctggtaaa
     3361 taggtaagtt catgttagtc ttttttcctg acgggtggta atgagagttg ttttttcacc
     3421 gccactactc gtattgctac aatgaaaata atacaaatta cttcggacac cctttcctgc
     3481 aggtgccatt gctgtaaaag caaatacaaa aggccgccgg caatgcaggc cgatgcatag
     3541 atctctttct ggaaaatgag cggcactttg ttcaacaaca catcgcggat aaccccgcca
     3601 aagcaggcgc tgatggtgcc cagggccacc gccatgccgg gcgagaaccc gaattgcaag
     3661 gccatgtcca tgcctgcaat ggtgaagagc cccaagccca gcgaatcgaa gagaaacagg
     3721 gtgcctgcca atttgtgttg cacgccttcc accagcatgg tgccaatggc cgacaccagg
     3781 atgactgaaa tgatgagttc attccgcatc cagctcacgg gtgtgttgcc aatgagcaga
     3841 tcacgcaggg tgcccccgcc aatggcggta acaaaagcaa taatgataac gccgaaaaca
     3901 tcaagcctgc ggtcaatagc ctgccgggcg ccactgatgg caaatgcggc ggtacccagt
     3961 acatcaataa tgaaaaggaa atcaaaaaca ggcatgaggc gttggttgca gatcgcaagt
     4021 taaaggttgc aggtc
//
LOCUS       DATIQF010000229         2346 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_231466,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000229 DATIQF010000000
VERSION     DATIQF010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2346)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2346
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231466"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            166..1527
                     /locus_tag="VLL95_03625"
     CDS             166..1527
                     /locus_tag="VLL95_03625"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSR37980.1"
                     /translation="MKRTFLAAGLLVLLVQQVQAENDSIMLRKMADEIMLRSTAYENL
                     RFLCKQVGPRLSGSPQAQKAVEETARMLREAGADTVYLQPCMVPHWVRGEKEQGILTY
                     GGKQKALNVCALGMSVGTPASGIKAGVIEVRNFEELEKLPDDVVKGKIVFFNYPMRPD
                     LIHGGYGDAVRYRSNGPVAAAKKGAVAVMIRSVTHSLDNYPHTGATRYDSTVKKIPAF
                     ACSTMDAEWLSKQLKLKMPTQLFLKSGCKQLDDVLSYNVIGEIRGSEKPEEIITAGGH
                     LDSWDLAEGAHDDGAGCMQSIEVIRAIKEMGLKPRRTIRAVMFMNEENGLRGGNAYAE
                     YAKKNNEKHLFAVESDAGGFGVQTLGVSGKPQQFEKAKSWEPLFKPYGIYEISNGGGG
                     ADIGPLRPLGTVMCGVNPGSQRYFDHHHAANDVFEAVNKRELELGAFSMAAICWLVSE
                     YGL"
     gene            complement(1725..2135)
                     /locus_tag="VLL95_03630"
     CDS             complement(1725..2135)
                     /locus_tag="VLL95_03630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37981.1"
                     /translation="MAAKRAYRMTAILLLITIVAFNFTPLNLLFKWSIDADYYAYSNY
                     SGTVTVTEDWYKRKLIGNLSVFERVNPTCVTRGFESDTTMYRLFRKNPLAFWRWKDYM
                     TDKRFDLRYAKWEEIEKRRRPYIDTIANTPCRDF"
BASE COUNT          621 a          517 c          613 g          595 t
ORIGIN      
        1 gccagtggcc agcgtggttt ttaaggatag cattttcata ggttttgata atatgtgtaa
       61 ccgtttgaga catgaaaatt acattggggc gactgattgg catcacttca ccttctaatt
      121 tattctacat taacagcctc tttcacttca ataacctacc agaatatgaa gcgtactttt
      181 ttagccgcag gcttattggt tcttttggta caacaagttc aggcagagaa tgattccatc
      241 atgctgcgca aaatggcgga tgaaatcatg ctgcgcagca ctgcttacga gaacctgcgt
      301 tttttatgta aacaagtggg ccctcgtttg agcgggtcgc cacaggcaca aaaggccgta
      361 gaagaaactg cccggatgtt gcgtgaagct ggtgccgaca cggtctacct gcagccctgc
      421 atggtaccgc attgggtgcg tggcgaaaaa gagcaaggca ttttgaccta tggtggcaag
      481 caaaaagcac tgaatgtatg tgccctgggt atgagcgttg gcacgccagc cagtggcatc
      541 aaagccgggg tgatagaagt caggaatttt gaagagctcg aaaaactgcc tgatgatgtg
      601 gtaaagggca aaatcgtttt tttcaattat cccatgcgac ctgacctgat acacggtggt
      661 tacggcgatg ccgtgcgtta tcgttcgaac gggccggtag cggctgccaa aaaaggagcg
      721 gtggcggtca tgattcgcag tgtgacccat tcgctggaca actatccgca taccggcgcc
      781 acccgctacg atagcaccgt aaaaaagatt cccgcctttg cctgtagtac catggatgca
      841 gaatggctga gcaagcaatt gaaactgaaa atgccgacgc aactcttcct gaaatcaggc
      901 tgcaagcaac tggatgacgt gctaagctat aatgtaattg gcgaaatacg tggcagcgaa
      961 aaacctgaag agatcattac cgccggcggg catcttgata gctgggattt ggccgaagga
     1021 gcacatgacg atggtgcggg ttgcatgcaa agcatcgagg tgatcagggc cattaaggaa
     1081 atgggcctga aacccaggcg taccatcagg gccgttatgt ttatgaatga agaaaacggg
     1141 ttgcgtggtg gcaatgccta tgcggaatat gcaaagaaga ataacgaaaa gcatttgttt
     1201 gccgtggaga gcgatgcggg aggatttggt gtgcaaaccc ttggcgtgag cggcaagcca
     1261 cagcaatttg aaaaagcaaa aagctgggag ccattgttca aaccctacgg catttatgaa
     1321 atcagcaatg gaggaggagg cgccgacatc ggcccgctgc gtccgttggg tacggtaatg
     1381 tgcggtgtca atcccggcag ccagcgctat ttcgaccacc accatgcagc caatgatgtg
     1441 tttgaagccg tgaacaagcg ggagttggag ttgggtgcat tcagcatggc tgctatctgc
     1501 tggctggtaa gcgaatacgg tttgtgactt gtaaatttcc ggcaaataaa aaggggcgct
     1561 gaaaggcgcc cttttttaaa ccctggaaca aacccaccat tttcattgca cgaatacgat
     1621 cggtggccga agaaaaattc aataatggtg taagactaag tccaaccgat gggggtttgc
     1681 tatcataata tcttttaaaa ggaattgtgt tttttaactg ctattcagaa gtccctgcaa
     1741 ggtgtgttgg caatggtatc aatgtacggt cttcttcgct tctcaatttc ttcccacttt
     1801 gcgtatcgca agtcaaaccg cttatcggtc atgtagtctt tccatcgcca aaaagccaat
     1861 gggtttttcc tgaacagccg gtacatggtg gtatcacttt caaagcctct tgtcacacag
     1921 gttggattta ctctttcgaa gaccgacagg ttaccgatca gttttctttt gtaccagtcc
     1981 tcagttacgg ttaccgtacc actgtaattg gagtaagcat agtagtccgc atcaatcgac
     2041 catttaaaga gcaaattgag gggcgtgaaa ttgaatgcaa caatggtgat aaggagcaga
     2101 atcgcagtca tgcgataggc tcttttggct gccatgttat acttttttgg ttctgcagtg
     2161 agcacttttc actctacccg gtaccctttg ctatcctcaa ctggtaagaa caaagcatta
     2221 gttgcacggg ccgttgctgg cctgggcctt caggttcacg ccaatgtcaa tgttattggc
     2281 ataaggactg cctgaatact tctgacgcga caaatcctta tacattccat tgggcgagaa
     2341 gggaac
//
LOCUS       DATIQF010000230         1513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_64147, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000230 DATIQF010000000
VERSION     DATIQF010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64147"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(84..518)
                     /gene="ybeY"
                     /locus_tag="VLL95_03635"
     CDS             complement(84..518)
                     /gene="ybeY"
                     /locus_tag="VLL95_03635"
                     /inference="COORDINATES: protein motif:HMM:TIGR00043.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HSR37982.1"
                     /translation="MAIRFSYADKTLAYSKKKKLKQFLEVISSKEGYGIEELAYVFCS
                     DDYLLDINRRFLQHDYFTDIITFDLREDLKSKDLAGEIYISIDRVADNAHSLNVSFEE
                     ELCRVVFHGLLHLCGYKDKRKPDVARMRAAEDRYLDLYKTAM"
     gene            578..823
                     /locus_tag="VLL95_03640"
     CDS             578..823
                     /locus_tag="VLL95_03640"
                     /inference="COORDINATES: protein motif:HMM:NF015956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046914 - transition metal ion binding
                     [Evidence IEA];
                     GO_process: GO:0006811 - monoatomic ion transport
                     [Evidence IEA];
                     GO_process: GO:0055072 - obsolete iron ion homeostasis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FeoA family protein"
                     /protein_id="HSR37983.1"
                     /translation="MIKKLSELNPGENAVVHSFSSNDIFLKLMEMGCVPGEAIQVDMR
                     APLGDPISISIAGYHLSLRISEAEHIMVETVSTPTTL"
     gene            827..1396
                     /gene="nadD"
                     /locus_tag="VLL95_03645"
     CDS             827..1396
                     /gene="nadD"
                     /locus_tag="VLL95_03645"
                     /inference="COORDINATES: protein motif:HMM:NF000840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000309 - nicotinamide-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_function: GO:0004515 - nicotinate-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HSR37984.1"
                     /translation="MHVGLYFGSFNPIHIGHLIIASYARHTTELEQVWLVPSPQNPLK
                     HSATLLNEYHRLHLVQISIEGDPNLRVTDIEFHLPKPSYTIDTLTYLQEKYPHHTFSI
                     IMGSDSFTNIHKWKNYQTLLTNHKIFVYNRPGFNITETHGAILEIIEAPLLSISSTQI
                     RAMIRQQIPIRYLVPDAAAKEIMDNNYYR"
BASE COUNT          443 a          403 c          286 g          381 t
ORIGIN      
        1 tattccgaat cccgatgttc cacgtggaac aaaactttac ggtgaggttg gggggaaaca
       61 caactatgtt ccacgtggaa caatcacata gccgttttgt ataaatccag gtagcgatct
      121 tctgctgccc tcatcctggc aacatcgggt ttgcgtttgt ctttgtaccc acagaggtgc
      181 agcaaaccgt ggaacaccac cctgcataac tcctcttcaa aagaaacatt caatgaatgc
      241 gcattgtcag ccacccggtc aatagagatg tagatctccc ccgccagatc cttgcttttc
      301 aaatcttccc gcaagtcgaa ggtgatgatg tcggtgaaat aatcgtgttg cagaaagcgg
      361 cggttgatgt ccaataaata gtcatcagaa cagaacacgt aagccagttc ctcaatgcca
      421 tacccctcct tgctggaaat gacttccagg aactgcttga gctttttctt tttactgtaa
      481 gccaaggtct tgtctgcgta ggaaaaacgg atagccattt cgctttttga aaacagtcag
      541 aagatgaatc aggtactttt gcaaagtaac agcagccatg atcaaaaaac tctctgaact
      601 caaccccggt gaaaatgcag ttgtgcattc cttttcttcc aatgacattt ttctcaaact
      661 gatggaaatg ggttgcgtgc cgggagaagc catccaggta gatatgcgag caccattggg
      721 cgatccgatc tccatctcca ttgctgggta ccacctcagc ctccggatca gcgaagcaga
      781 acacattatg gttgaaaccg tttcgacacc aaccaccctg taagccatgc atgtcggatt
      841 gtacttcgga tcattcaatc ccattcacat agggcatctt attattgcct cctatgccag
      901 gcacaccact gaactggaac aggtttggct ggtgccctct cctcaaaatc cactcaagca
      961 ttcagctacc ctgctcaacg agtaccatcg actccatctt gtacagattt caattgaagg
     1021 cgatcccaac ctcagggtca ccgatataga atttcacttg cccaaaccat cgtataccat
     1081 cgacacactc acctacctcc aggagaaata cccccatcac actttttcca tcattatggg
     1141 aagcgacagc ttcaccaaca ttcacaaatg gaaaaactac caaacactac tgaccaacca
     1201 taaaatattc gtttacaacc gtccgggttt caacatcact gaaactcacg gcgctatcct
     1261 tgaaatcatt gaggcgccat tgttgtccat atcctccacc caaatacgag ccatgatccg
     1321 ccagcaaatt cccatcaggt acctggtacc agatgctgca gccaaagaaa tcatggacaa
     1381 caattactac cgttaatttt taatattaaa tattatttta atattaaaat acaaatccca
     1441 acaacagaca aagcagcacc actatgggtg atggaagcct cgtgaatgtt aacagtagga
     1501 aggttccagc cat
//
LOCUS       DATIQF010000231         1536 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_49126, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000231 DATIQF010000000
VERSION     DATIQF010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49126"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(111..1529)
                     /locus_tag="VLL95_03650"
                     /pseudo
     CDS             complement(111..1529)
                     /locus_tag="VLL95_03650"
                     /inference="COORDINATES: protein motif:HMM:NF017669.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helicase HerA-like domain-containing protein"
BASE COUNT          311 a          405 c          362 g          458 t
ORIGIN      
        1 tgtttgcctt tagaagccgg cttgtttgat gcggccttgc aacggttgat tgaagaagag
       61 caggtgcagc agcagcccga tggcacattt gtacgtaagc ctgtaaaagg ttagaagaag
      121 cttttctttc ggctcctgcc acccagcccc aatgcgccca gcaaactcct ggtgatggtg
      181 ttggccgctg tgcgcatggc acttcttacc acgctgttat ccaacacttg ctcaaccata
      241 gagggttctt ctttcgcttg ctttttctgt tgcttttctt cttcaacggc ttttgttttt
      301 tcagccgcct cttccagttt agcagtcaga atctcatagg cactgtggct gtccacttct
      361 tcgttgtatt tctttaccag tttgctgcct gctactatag cattcacttc cgcatcggtg
      421 agtacatcca tgcggctgcg gggcggattc agcatcacat gcaccaatgg cgtgggcacc
      481 cctttttcat tcaggagcgt taccaatgct tcgccaatgc ccacttgtgt cagcagttca
      541 tccgttttgt aaaagtcgct gaggggatag ttttccgcag tttgtttgat ggtcttcctg
      601 tcgttggccg taaaggcacg cagggcatgc tgcactttca tacccaactg ccccaaaatg
      661 ctggcaggaa catccatggg gttttgcgta caaaagaaaa tgccgatgcc tttggagcga
      721 atgagtttga taatggtttc aatttgttgc agcaaggctt cgctggcttc ctggaatatg
      781 agatgcgcct catcgatgaa catcactagc ttgggtttgt ctagatcgcc ttcttccggg
      841 cagctggcat acaactctgc cagcatttgc aacatgaagg tgctgaagag tttgggcttg
      901 tcctgcaggt ccatcacccg aagaatgttg accatgccgc gaccatcatc gttgatgcgc
      961 atcaggtctt ccacctcaaa acttctttca ccaaaaaaat gcgtggcgcc ctgttgctcc
     1021 agttcaatca ccttgcgcaa tatggtacct gtgctggtgg tcgaaatttt accgtattcc
     1081 ttttccagtt ctgctttgcc ttcttcggca gcatactgca acaatttctt gaagtctttc
     1141 agatcgagca acggcagttt agtgtcatca ctgtatttga acagcatggc taccagcccg
     1201 ctttgcgtat cattcaggcc taatattttg ctcagcagta ccggcccgaa ttcgctcacg
     1261 gtggctctca atcttacacc gggctggtct tttcccaatg ccaacaattc ggaaggataa
     1321 gcagtgggct ggtaggatat ttccagcaat tggctgcgtt cttcaatctt ggggttgctg
     1381 ctgccggcgg ctgcaatgcc actcaggtcg cctttgatat ccattaccaa cactggcaca
     1441 ctggcatcgc tcagcagtta gcttattacc tgcagtgttt tggttttacc ggttcccgtg
     1501 gctcccgcaa tcaaaccatg ccggttcatg gttttc
//
LOCUS       DATIQF010000232         3362 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_170573,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000232 DATIQF010000000
VERSION     DATIQF010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3362
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170573"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..576)
                     /locus_tag="VLL95_03655"
     CDS             complement(<1..576)
                     /locus_tag="VLL95_03655"
                     /inference="COORDINATES: protein motif:HMM:NF036933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37985.1"
                     /translation="MMLLGMALLGTNIVSSQDLSNKGKDFWITFPAHVDANLAVLGIY
                     ITSDRAATGKVDFNGYSLSFSIAANGVKTFFLGPNGDAPNSTVYLGLQEGIQTNAAIH
                     VTSDQPVVVYAHIIRQARSGASLILPTNVWGKEYIVPSYRSAGSSGTNSGYGIINVVA
                     KEANTVVEITPKATSRDGSKPAGVPYTITLSQ"
     gene            complement(703..1320)
                     /locus_tag="VLL95_03660"
     CDS             complement(703..1320)
                     /locus_tag="VLL95_03660"
                     /inference="COORDINATES: protein motif:HMM:NF020463.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WbqC family protein"
                     /protein_id="HSR37986.1"
                     /translation="MKLIIENQVFGPIISYVHLVKATDVEIEQYETYQKMSYRNRFQL
                     LSPHGVRNLSVPLVGGRDQKGRLTAEIEIDYKGRWLAEQWRSFESWYNRSPFFFHYGQ
                     EVKTIFEERHLLLSDLAMASQRWVLRQLGWNGLLGLTSSWKEDYQQDAKTEDLRNKFL
                     PRNRQTFALRPYQQVFDLPFESNLSILDLLFNMGPQARSYLLNQI"
     gene            1579..2046
                     /locus_tag="VLL95_03665"
     CDS             1579..2046
                     /locus_tag="VLL95_03665"
                     /inference="COORDINATES: protein motif:HMM:NF015147.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LEA type 2 family protein"
                     /protein_id="HSR37987.1"
                     /translation="MIRYLFLAIPLLLVFACKSPQPVEMKGVTLQSVKPVGSDLKKIL
                     VAATVKVSNPNPFPIKVWHTDAVCKINGRTVSAIQVDTLIKLAPSSLTNIPIELELET
                     APLLSSGLSLLTGAGIPYSISGTTKAGRGGIKWSIPFEQAGTFTTKDLGQLGF"
     gene            complement(2043..2387)
                     /locus_tag="VLL95_03670"
     CDS             complement(2043..2387)
                     /locus_tag="VLL95_03670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37988.1"
                     /translation="MKYSLLIIAFLCVGMASIAQQPKIQRAEIKTPTAKCEQCKQIIE
                     SVAPKYVDGLYKINVIWKRGVTQVQWYPDRTNIEELKTAIANAGFDADDVTAAPDAYK
                     KLPACCKKPESN"
     gene            complement(2457..3089)
                     /gene="pyrE"
                     /locus_tag="VLL95_03675"
     CDS             complement(2457..3089)
                     /gene="pyrE"
                     /locus_tag="VLL95_03675"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR00336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HSR37989.1"
                     /translation="MKTNEKAVAEKLLQIGAIKLSPEAPFTWASGWKSPIYCDNRKTL
                     GFPYIRDFVKSELCNVVFSDFAEAEMLAGVATAGIAWGAMAADQLKLPYIYVRPKPKE
                     HGLGNQIEGYYEPGQKVLVIEDLVSTGKSSLQVVEVVRQAGLEVVGMVAIFTYGFPQA
                     AEAFEKANVPFKALTNYPTLIELAIEKGVVAGAQLETLMQWSANPSEWGK"
BASE COUNT          881 a          825 c          704 g          952 t
ORIGIN      
        1 ctggctgagg gtgattgtat agggaacacc tgctggcttt gaaccatctc ggctggtggc
       61 ctttggtgtt atttctacca cggtattggc ttctttagcc accacgttta tgatgccata
      121 tccgctattt gttccacttg aacctgcgct tctgtaactc ggtacaatgt attccttccc
      181 ccatacatta gtcggcaata tcaggctggc ccctgatctt gcctgccgaa tgatatgcgc
      241 ataaaccacc accggttgat cggaagtaac gtgaattgca gcgttggttt gtatgccctc
      301 ctgcaaaccc aggtaaacag tactattggg agcatcccca ttgggtccaa gaaaaaaagt
      361 ctttacgcca ttggcagcta tggaaaatga cagcgagtac ccattaaaat cgaccttgcc
      421 tgtggccgcc ctatccgaag taatataaat gcctaaaaca gcaagattgg catctacgtg
      481 tgcaggaaaa gtgatccaga aatctttgcc cttattggat aaatcctggc tggaaacgat
      541 gttggtcccc aacaaagcca ttcctaacag catcatccaa accaacaatt tcctcatcgt
      601 atgcagcagt tcaatttagg gagtatgcaa attaggcttt atggacaaac atcaaacact
      661 ttcaaagagt ttaaaagggt aacgccattc agactctgaa aatcaaattt ggtttaaaag
      721 ataagacctt gcctgggggc ccatgttaaa aagcaggtcc aggatactca ggttgctctc
      781 aaagggtagg tcaaaaacct gttggtaggg tcgcaaggca aatgtttgac gatttctggg
      841 caaaaatttg ttgcgcaggt cttcggtttt agcatcttgt tgataatcct ctttccagct
      901 agaagtaaga cctaataaac cgttccagcc caactgccgc aacacccatc gttggctggc
      961 cattgccagg tcagaaagga gcaaatggcg ttcttcaaaa atggtcttga cctcctgacc
     1021 gtaatgaaaa aagaatggag acctattgta ccagctttca aaactgcgcc attgttctgc
     1081 cagccaacgg cctttgtaat ctatttctat ttcagctgtc aaccggcctt tctgatccct
     1141 tccaccaaca agtggtacag acaaattccg gacaccatgc gggctcaaca attgaaacct
     1201 gttccggtaa ctcatcttct gataggtctc atattgctcg atttcaacat ccgtagcttt
     1261 tactaaatgg acataagata taattggccc aaacacttga ttttcaataa taagtttcat
     1321 tacatcgaaa ttttacagac aatatgacag gcctcctttt taattcacaa tccgggtacg
     1381 aaatcaacta tttattacta gctgaaacaa tcgcttaata ataactatta attgtaggtc
     1441 aatgttttag aaagtattat ataaactaac cgttttagta aggattcttt tttggttttt
     1501 atgcaaacaa ctaactcttt tagttaaaca attagccatt tgattaagag atgttgcgtt
     1561 tgcgcttaaa ttgcctccat gatccgttac ctttttcttg ccattcccct cctattggtc
     1621 tttgcctgca agtctcctca gccggttgaa atgaagggcg taaccctgca atcagtaaaa
     1681 ccggttggct cggatttaaa gaagatattg gtagccgcta ctgtcaaagt aagcaacccc
     1741 aacccattcc ctattaaagt gtggcataca gatgcggtgt gcaaaataaa cggacgtacc
     1801 gtgagtgcca tccaggtgga tacactaata aaactagccc cctcttccct gacaaacatc
     1861 ccgattgaat tggaacttga aaccgctcct ttgcttagca gtggccttag tttgctgaca
     1921 ggtgcgggca ttccctactc tatttcgggc accacaaagg ctggacgagg tggcatcaaa
     1981 tggagtattc cttttgagca ggccggcact tttaccacta aagacctggg gcaactcggc
     2041 ttctaattgc tttcaggttt tttgcagcaa gccggcaatt ttttgtaggc atccggggcg
     2101 gctgtcacat catctgcatc gaaaccggca ttggctatag ccgttttcaa ttcttcgata
     2161 ttggttctgt cgggatacca ctgcacctgg gtgacgcctc ttttccaaat gacattgatc
     2221 ttgtacagcc catctacata tttaggcgcc acagactcaa tgatctgctt gcactgctcg
     2281 cacttagcag tgggtgtttt tatttcggct ctttggatct tgggctgttg ggcgatggat
     2341 gccattccaa cacacaagaa ggcgatgata agcaatgaat atttcatgac tggtgaattg
     2401 acagcatttt caatggaagg cggagcatct cttgccgatg agtaatggag cgaatcttac
     2461 tttccccact ccgaagggtt ggccgaccac tgcatcaatg tttccagttg tgccccggca
     2521 accacgccct tttctatggc cagttcaata agagtgggat aattggtcag tgccttgaat
     2581 ggaacattcg ccttttcaaa tgcttctgca gcctgtggaa atccgtaggt gaaaatggcc
     2641 accattccca ccacctccaa accggcctgt ctcactactt ctactacctg cagactgctc
     2701 ttgccggtgc tcaccaaatc ctcaattacg agcacctttt ggccgggttc ataataacct
     2761 tcgatctggt tgcccaggcc atgctccttg ggtttgggac gaacatatat gtaaggcagt
     2821 ttgagctggt cggcggccat agcgccccag gcaataccag cagtggcaac acccgccagc
     2881 atctcagctt ctgcaaaatc tgaaaaaacg acattgcaca gttcactctt tacaaaatcg
     2941 cggatatacg ggaacccaag ggttttacga ttgtcgcaat agataggact cttccagcca
     3001 ctggcccagg tgaaaggcgc ttcaggactc aatttgatcg caccaatttg cagcagtttc
     3061 tctgccaccg ctttttcatt tgttttcata acataattgc tttgcatcaa aatcgctgca
     3121 ttcaggacgt tgccggcgat tttctgtggc tgcgaatatc gcattcttta gcggcatgca
     3181 tccggccgat tttcatttcg taacattgta atatggacgc tgggtaccgc atttatttcg
     3241 gcaataaacc ttacttcatt acttcatcca tgaacgaaag gttatatgcg cttaccacat
     3301 ggggcggcac cattctcatc aatcaaccca acgctgcgtg cattttgtcc accattcatg
     3361 ac
//
LOCUS       DATIQF010000233         7908 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_64174, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000233 DATIQF010000000
VERSION     DATIQF010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7908
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64174"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..4000
                     /locus_tag="VLL95_03680"
     CDS             <1..4000
                     /locus_tag="VLL95_03680"
                     /inference="COORDINATES: protein motif:HMM:NF024974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HSR37990.1"
                     /translation="AVNFSATPLSGCSPLNVQFTDNSTTSSGTITSWNWDFGDGNLGT
                     GKNPLHVYETPGNFKVTLTATTSEGCSKSFSIDNYIQIKQLLKADFELQYTPACVPNV
                     TVKFKDKSLGVNIISWFWEFGDGNTSSSQNPTHTYTTVGAFDVKLTVKNLDGCTHTYT
                     MPGAVNVANLKADFTLPTLACANAASVYVGKATPSPLVDSTIWTISDGTTYRVQDLVK
                     ALPNPGIYNITQTVWQYGCSSSITKSIEVKPRPTASFSSSTSIACKAPLTVSFQNTSS
                     NGKVVKWDFGNGKTSMDENPSITFDTLGIYTVTLVVSNPLGCLDTLRKVALVKVLPPQ
                     LDSIVGLPYDGCGPYTANLQPRITSSEPVVSYNWNFGDGGTSTLQNPTHTFNGTGTYT
                     VTLTVSTTSGCQNTFQRKVIISPKPTADFTGSPLMVCPSIPTVFKDQSTGTITRWFWA
                     FGDGSTSTAQNPQHKYNDTGFMDVKLIVYNNGCADTLVRKKYVYVDPPIARFKDSTTC
                     TDQFTHYFTNQAIGATSWQWDFGDGNTSTAKDPVHTYADTGTYKVSLYVTDGVCNHTT
                     DMEVYVLQQKAAIQPVYIAGCTSATAELTAIGPSTFPSRIKGYEWTFQGDPPVKTDTN
                     FITRFFPDTTTITVKLKITDINGCEDSSFLPVKIELPASKTNFTPATQRICVNSLATF
                     ADSSKTFPTNPVVKWTWYFDNNGDPENDTVMTAAPFQFKYLRGGIYDVKLITEDKFGC
                     IDSLEKKAAVRVFEPDARFVTKDTMVCLNTPVVFENYSSNAPGSVQFLWSFGDGRTSD
                     KDQPIISYSTPGRYDIKLTLIDPYGCVDTLLRPGYVVAADAKADFAMSDSFTTCPPFL
                     VQFTNKSASNFVNLWDFGNGNFSSLINPAHTFTQSGDFKVKLKIVGNGGCTDSTFKMV
                     LIRGPQGVISYSPLENCAPMSVQFKSTAVNTKNYVWDFSDGVTRITSDSSVTHIYQGP
                     GRYLPRVILEDGKGCQIPILGSDTIVVNDTPVVVAGPNPIVCLGQSVALQATGGITYR
                     WDASSSLSCTNCSAPMATPTAPTVYRVTATDAKGCVGTDTALVRVMLPGVLSVSLGDT
                     LCIGESVQLSAGGFARYSWSPAAGLSNPNISNPIARPNSTTNYQVTATDTLGCFSASG
                     TIPVTVYPIPKIDIVESVIKANVGVVLPLKSVASADVSKYLWTPATGLSCTTCKEPLA
                     TVQSKISYSLQVSNDAGCIASDQMRIEPTCTGESIFVPNTFSPNGDGNNDIFYPRGSG
                     VSRIKYMQIFNRWGEMIFERKDFVLNDPAAAWDGTFRGQKLTPDVFVYVMEVICGNNQ
                     TFMKKGNVTLLQ"
     gene            4070..5080
                     /locus_tag="VLL95_03685"
     CDS             4070..5080
                     /locus_tag="VLL95_03685"
                     /inference="COORDINATES: protein motif:HMM:TIGR03519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PorP/SprF family type IX secretion system
                     membrane protein"
                     /protein_id="HSR37991.1"
                     /translation="MCCLMLLYGISAAAQDIHLSQFFEAPLWRNPSLAGIFQGDFRAQ
                     GVFRTQWGSVTVPYQTGSFNTEYKMPIGQGNDFITLGGQFMYDVAGTTNFRTTHILPA
                     INYHKSLSGDKNTYLSLGFMGGLVQRSIDRSKITTNSQFDGTGWNPTLDINESITNYN
                     ISYGDASVGLSFNSSIGESEYDNFFVGVAYHHFNRPTNSFYRNPGIELNPKWVYSGGV
                     RFGVTSQTYLTLQADYNVQGAYSQAIAGGMVGFALGGYDFTESAYNIHFGAFMRIKDA
                     IIPVIKLDYSPFSVAISYDVNTSQLRAASTGRGGFELSITYQSFFDRDNSTKNAVLCP
                     RF"
     gene            5134..6702
                     /locus_tag="VLL95_03690"
     CDS             5134..6702
                     /locus_tag="VLL95_03690"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HSR37992.1"
                     /translation="MFWLLLASAGLLLLARLGAAPVYILDEAKNAQCAREMFLRNDWV
                     VPTFNGELRTDKPALHYWFMIISFKAFGVGEWQARIFSALAGLGTIFSTFYFVRRHAN
                     AVVGFFASLALVLSTHFLFEFRLAVPDPYLIFFTTLGLFAGFTWLQEKKWKWLLLASG
                     SLALATLAKGPVALGLPGICLLICIVWQRQWWVFKDWRLLLAGLFYILLAAPWYYAVH
                     QRTQGAFTNGFFLEHNINRFSSEMEGHGGPFFITLLIVLLGLLPFTVFIVNATKRIFK
                     PQLPPIVFFGAVVAIVYVVFFSISSTKLPNYPMPCYPFAGLVLGYFISDFVQRRTSLP
                     NYGWLVLLVIGVALSAGGFFALQLEKELADLKWLSLGLMVLPVGMIVLWLRFRQSAAR
                     SVLALSGTYFLFNAYVLWVAYPMVYQRNPVTVLAKDIQSTRAVLVAYKDYNAAFNFNL
                     PPGDLPLTVFFNADQLALFCMSQEQGKDILIICRTDKLEELNKLGAREVKRHRDLFEI
                     PTTVLLRFSPGKDF"
     gene            6769..6859
                     /locus_tag="VLL95_03695"
     tRNA            6769..6859
                     /locus_tag="VLL95_03695"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6803..6805,aa:Ser,seq:gct)
     gene            6996..7358
                     /locus_tag="VLL95_03700"
     CDS             6996..7358
                     /locus_tag="VLL95_03700"
                     /inference="COORDINATES: protein motif:HMM:NF017451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four helix bundle protein"
                     /protein_id="HSR37993.1"
                     /translation="MFDFEKLEVYQVTKTQNIEVLKFLFQHPELNADFCNQWKEVSMG
                     TVINLAESTARMTHPEKKHFLTVARGNINSCVALMELGREMGWIDQGTFDHFYSRYEQ
                     MSKMMLGMIRSFSAEARP"
     gene            7459..7532
                     /locus_tag="VLL95_03705"
     tRNA            7459..7532
                     /locus_tag="VLL95_03705"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7493..7495,aa:Pro,seq:tgg)
     gene            7821..7894
                     /locus_tag="VLL95_03710"
     tRNA            7821..7894
                     /locus_tag="VLL95_03710"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7854..7856,aa:Gln,seq:ttg)
BASE COUNT         1990 a         1836 c         1946 g         2136 t
ORIGIN      
        1 tgcggtcaat ttttccgcaa cgcctctgtc gggatgcagc ccattgaatg ttcaatttac
       61 cgataacagt accacttcct ccggcaccat caccagttgg aactgggatt ttggcgatgg
      121 caacctgggc accgggaaga atccattgca tgtgtatgaa acacctggca atttcaaagt
      181 gacactcacc gccactacca gtgagggatg ttccaaatcg ttttcgattg acaattacat
      241 ccagatcaaa cagttgctaa aagcagattt tgaattgcag tatacacctg cctgtgtgcc
      301 caatgtgact gtgaagttca aggacaaaag ccttggtgtg aatattatat catggttctg
      361 ggaatttgga gatggcaata ccagctccag ccagaacccc acgcacacct acactacagt
      421 tggcgctttt gatgtaaaac tgactgtaaa gaacctggat gggtgcacgc atacttacac
      481 catgccgggt gcggtaaatg tggccaatct aaaagctgat ttcacactgc ctacgctggc
      541 ctgtgccaac gcggcttcgg tatatgtagg caaggccact ccatcgccat tggttgactc
      601 caccatctgg accataagtg atggaactac ctaccgggtg caggacctgg taaaggcact
      661 tcccaatccc gggatttaca acatcacgca aactgtttgg caatatggct gctcgagcag
      721 tattaccaaa agcatagagg tgaagccacg cccgaccgct agtttttcat cctccacatc
      781 catagcctgt aaggcaccgc tgacggttag ttttcagaac accagttcca atggaaaagt
      841 ggtgaaatgg gattttggaa atggcaaaac atccatggat gaaaaccctt ctatcacctt
      901 cgatactttg ggtatttata ctgttacatt ggtggtaagc aatccattgg gatgcctgga
      961 cacattgaga aaagttgctt tggtgaaggt gctgcctcct caattggact caattgtggg
     1021 gctgccttat gacggttgcg ggccttacac cgctaacctg cagccaagaa tcacttccag
     1081 tgagccggtg gtaagttaca attggaattt tggtgacggt ggaaccagta cgcttcaaaa
     1141 tccaacgcat actttcaatg gcaccggtac ctacactgtt acgctgactg tttccaccac
     1201 ttcgggttgt cagaatacct ttcagcgaaa agtgatcatc agtccaaagc ccacagccga
     1261 tttcactggt agtcccttga tggtatgtcc ttctattcca actgtattca aagatcaaag
     1321 taccggtacc atcacccggt ggttctgggc ttttggtgat ggcagcactt caactgccca
     1381 gaatccgcaa cacaaataca atgacactgg cttcatggat gtgaagctga ttgtatacaa
     1441 caatggatgc gccgacacgc tggttcgtaa aaagtatgta tatgtagacc cgccaattgc
     1501 ccgtttcaaa gattccacca cctgtaccga ccagtttacc cattacttca ccaaccaggc
     1561 cattggtgct acttcgtggc agtgggattt tggtgacggt aatacttcta ccgcaaaaga
     1621 cccggtacat acgtatgctg ataccggcac ctataaggtt tctctttatg tgaccgatgg
     1681 cgtgtgcaat catacaaccg acatggaagt gtatgtattg cagcaaaagg cagccatcca
     1741 gcccgtatac attgccggct gcacctcggc cacagcggaa ttgaccgcca taggcccatc
     1801 cactttccct tcacgaatca aaggatacga gtggacattc cagggagacc cccctgtaaa
     1861 gacggatact aattttatca ccaggttctt tcctgatact accactatca cagtcaagtt
     1921 gaagatcacc gacatcaacg ggtgtgaaga ttcttcattt ctgccggtaa agattgaact
     1981 accagcttcc aaaaccaatt tcacacccgc tacgcagcgg atatgcgtga attctttggc
     2041 aacctttgct gattccagta agaccttccc caccaatccg gttgtaaagt ggacctggta
     2101 tttcgacaac aatggtgatc ctgaaaatga cactgtaatg accgcggctc cattccagtt
     2161 caaatatttg cggggcggca tttacgatgt gaaactgatc actgaagata aattcggatg
     2221 tattgactca ctggagaaaa aggctgctgt aagggtattt gaaccggatg cccgttttgt
     2281 aacgaaggat accatggttt gtttgaacac ccccgtggtg tttgaaaact attcttccaa
     2341 tgctccgggt tccgtgcagt tcctttggag ttttggcgat ggccgtactt ctgataagga
     2401 ccagccaatc atttcataca gcacgcctgg caggtacgac ataaagctca cccttattga
     2461 tccctacggt tgcgtggata ccctgcttcg tcccggctat gtggttgctg ctgatgccaa
     2521 ggccgatttt gccatgagcg attcatttac tacctgtccg ccgttccttg tgcagttcac
     2581 gaacaaatcg gccagcaatt ttgtgaacct gtgggatttt ggcaatggta atttttcgag
     2641 tttgatcaac ccggcccaca cttttacgca atccggcgac ttcaaagtga agttgaaaat
     2701 tgttggcaat ggcggttgca ctgattcaac tttcaaaatg gtacttatca gaggccctca
     2761 gggtgttata agctacagtc cgctcgagaa ttgtgcaccc atgtctgtgc agtttaaaag
     2821 cactgcagtc aacacaaaga attacgtgtg ggatttcagt gatggggtaa cccgtattac
     2881 aagcgattcc tctgttacac atatttacca gggcccgggc aggtatttgc ctcgtgtgat
     2941 tttagaagat ggcaaggggt gccagatccc gatactgggc agcgatacca ttgtggtgaa
     3001 cgatacgccg gttgttgtag ccggtcctaa tcccattgta tgtcttggac agtcggttgc
     3061 gctgcaggcc accggaggta ttacttaccg ctgggatgcc agttcttcct tgtcatgcac
     3121 caattgcagc gcccccatgg ccacccccac cgcccccaca gtttaccggg tgacagccac
     3181 cgatgccaag gggtgtgttg gcactgatac agcattagta agagtaatgc tgcccggagt
     3241 acttagtgtt tcactggggg acacactatg tattggggaa tctgtacaac tcagtgctgg
     3301 cggttttgcc aggtattcat ggtctcccgc agcgggacta agcaatccta atatttccaa
     3361 tcctattgcc cggcccaaca gcaccaccaa ttaccaggtt accgctaccg acacattggg
     3421 ttgcttttct gccagtggaa ccattcctgt caccgtgtat cccattccca aaattgatat
     3481 tgtagaatcg gtaattaagg ccaatgtcgg agtggtgctg ccgctgaagt cagtggcttc
     3541 agctgatgtg tcaaagtatc tctggacgcc agccactggc cttagttgca ctacttgcaa
     3601 ggagccctta gcgacagtgc aaagcaaaat cagctacagc ctccaggtat ccaatgatgc
     3661 ggggtgtatc gcctccgatc aaatgcgcat tgaacccacc tgtacagggg aaagcatttt
     3721 tgttcccaat actttttctc ccaatggtga tggcaacaac gacatatttt atccgagagg
     3781 cagtggggtg tcacgcatca aatacatgca aattttcaac cgttggggtg aaatgatatt
     3841 tgagcgaaag gattttgttt tgaatgaccc cgctgctgcc tgggacggaa cattcagagg
     3901 tcaaaagctt acgcctgatg tgttcgtata cgttatggaa gtgatttgcg gaaacaatca
     3961 aacattcatg aaaaaaggga atgtgacatt gctgcaatag caagtgtgac gttcgaaata
     4021 agaagggaaa gaaacgagag gaaatagaat gataaggaaa gaaggaataa tgtgctgttt
     4081 aatgctgctg tacggtataa gtgctgctgc acaggatatc catctttccc agttcttcga
     4141 agctcccctt tggcgcaatc catctttggc gggcatattt caaggcgact tcagggcgca
     4201 gggcgtattt cgaactcaat ggggaagtgt taccgtcccc tatcagaccg gctctttcaa
     4261 tacagaatat aaaatgccca ttgggcaggg caatgatttc attacgctgg gagggcaatt
     4321 catgtatgat gtagccggaa caaccaattt caggaccact catattttac ctgccattaa
     4381 ctaccacaaa tctctgagcg gagacaagaa cacctatttg tcgctgggtt tcatgggggg
     4441 attggtacag cgctccattg acagaagcaa gattactacc aatagccagt ttgatggcac
     4501 cggctggaat cccaccctgg atataaatga gtcgatcacc aattataaca taagctatgg
     4561 cgatgcgagt gtaggattgt cattcaattc ttcgattggc gaaagcgagt atgacaattt
     4621 tttcgtagga gtggcgtacc accatttcaa ccgtcccacc aattcatttt accggaatcc
     4681 cggcattgaa ctcaatccta agtgggttta ctcgggtgga gtaaggtttg gcgtcacttc
     4741 ccaaacttat cttacactgc aggctgacta taacgtgcag ggagcataca gtcaagccat
     4801 tgccggaggt atggtgggct ttgctttggg tggatatgac tttactgagt cagcctacaa
     4861 tattcacttt ggcgccttca tgcgaattaa ggatgccatc ataccagtta tcaagcttga
     4921 ttacagcccc ttctcggtgg ccataagtta tgatgtcaat acctctcaat tgcgtgccgc
     4981 aagtacagga cggggtggtt ttgaattgag cattacctac caatcatttt tcgaccggga
     5041 caacagcacc aaaaatgcgg tactttgccc tcgtttctga atggtcaatt gtcttcgatt
     5101 acaagcatgt ttacacaagc gtattacaat agaatgttct ggctcctgct ggcatctgca
     5161 ggattgctat tgttggcgcg attgggcgct gcacctgtat atatattgga tgaagccaag
     5221 aacgcacagt gtgcccgtga aatgttctta cggaatgatt gggtagtacc cacttttaac
     5281 ggggaactgc gtactgataa accggcgttg cattattggt tcatgatcat ttcgttcaag
     5341 gcattcggcg tgggcgaatg gcaagccagg atattcagtg cccttgcagg ccttggcacc
     5401 atcttctcaa ccttctattt tgtgcggagg catgccaacg cggtagttgg cttctttgcc
     5461 tctctggctt tggtgttgtc cactcatttt ttgttcgaat tccggttggc ggtgcccgac
     5521 ccctatctca ttttctttac cacactcggg ttgtttgccg gttttacctg gctgcaggaa
     5581 aaaaaatgga aatggctttt actggcctcc gggtcactgg ctctggccac tttggcaaaa
     5641 ggtcctgttg cattgggttt gccgggcatc tgcctgttga tttgcattgt gtggcagagg
     5701 caatggtggg tgttcaaaga ttggcggctt cttttggccg gattgtttta tatcctgctg
     5761 gcagcgccat ggtattatgc ggttcatcag cggacgcaag gggcgtttac caatggattc
     5821 tttttggaac acaacatcaa ccgcttttca agcgaaatgg aaggacacgg cgggccgttt
     5881 ttcatcaccc ttcttattgt gcttttaggg cttttgcctt ttacagtatt catcgttaat
     5941 gccactaagc ggatattcaa acctcagttg ccacccattg tttttttcgg agcggtggtg
     6001 gccattgtct atgttgtatt cttcagcatc agcagtacca agttgcccaa ttatcccatg
     6061 ccttgttacc catttgcagg gttggtattg gggtatttta taagtgattt tgttcaaaga
     6121 cgtacaagcc ttcccaatta tggatggctc gtgcttctgg tgatcggggt ggccttatca
     6181 gcaggtggct tttttgcgct tcaattggaa aaagaattgg ctgatctgaa atggttgtcg
     6241 ctcggattaa tggtgttgcc agtcggaatg atcgtattgt ggttgcgctt tagacaatcg
     6301 gctgccaggt cggtgcttgc attgtctggc acttattttc tgttcaacgc ctatgtgctt
     6361 tgggtcgcct atcccatggt ttaccagcgg aaccccgtga ccgtcctggc aaaagacatt
     6421 caatcgaccc gtgccgtttt ggtggcctat aaggactata atgccgcatt caacttcaac
     6481 ttaccaccag gggacttgcc attgactgtg tttttcaatg ctgatcaatt ggcactgttt
     6541 tgtatgtcgc aggaacaggg aaaggatata cttatcatat gtcgaaccga caaattagag
     6601 gagttgaata aactgggtgc aagggaggtt aaaaggcatc gggatttgtt cgaaatccct
     6661 accactgtat tactgcgttt ctcacccggg aaggattttt aaaattgatt ttgcccgaaa
     6721 acataaatac ctatttttgc tgccccttca gaaaatgaag gttcggccgg tgaggtggat
     6781 gagtggctga aatcaacggt ttgctaaacc gtcgtacggg taatagcctg taccgagggt
     6841 tcgaatccct ccctcaccgc tctttttggc acaggacaat caattgaaat ggattgtgcc
     6901 ttgatgatgg gaaaatggaa caaggagctc tgatacaatt tgttaaataa taattattca
     6961 aatcctgtat cattgttcca caattaaaca cacgcatgtt cgattttgaa aagcttgagg
     7021 tttaccaggt aaccaaaacg cagaatattg aagttctgaa gttcctgttc cagcatccgg
     7081 aactgaatgc tgatttctgt aaccagtgga aggaggttag catgggtaca gttattaatc
     7141 ttgcagaaag cacagcaaga atgactcacc cggagaaaaa acattttctt accgtagcca
     7201 ggggcaacat taacagttgt gtggctttga tggagctggg tagggaaatg ggatggattg
     7261 atcagggcac gtttgatcat ttttattccc ggtatgagca aatgagcaaa atgatgctgg
     7321 gaatgatcag gagtttcagc gctgaggcga ggccttgatt ttgcccaaaa aagatagttc
     7381 ggggagtagc gcaggccggt agcgcatccc gctttgagag cgggagggtc gccggggcag
     7441 gaaaccaaaa agatagttcg gggagtagcg caggccggta gcgcacttgg tttgggacca
     7501 aggggtcgct ggttcgaatc cagtctcccc gacaagaaaa ggaagagtga tgagcgttaa
     7561 gccatcactc tttttcattt gtaccatgcc acactttgtt tacatccttt tcagtgatac
     7621 gaaatgtaga ttttactgcg gcagcgcagg ggatgtggaa gcccggttag ccaggcacaa
     7681 ctctaaagca acacccagca ccaggtctgg gattccctgg aaagtggtca gaattgtggc
     7741 atgcgagagc aaaagagcgg cgctgcaact ggagttgagg atcaagaaaa gaggcattga
     7801 gcgatggctg gctgaccatc cggcgtagcg caggctggta gcgcatcccg cctttggcgg
     7861 gagggtcgtt ctggttcgaa tccagtctcc ccgacaagaa acggaaag
//
LOCUS       DATIQF010000234         3545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_216340,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000234 DATIQF010000000
VERSION     DATIQF010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3545
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216340"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(133..1119)
                     /locus_tag="VLL95_03715"
     CDS             complement(133..1119)
                     /locus_tag="VLL95_03715"
                     /inference="COORDINATES: protein motif:HMM:TIGR03709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2 family protein"
                     /protein_id="HSR37994.1"
                     /translation="MDKKQRRQKFEKYIDSLRVKPGKSVSLKKDFESDYDHKMVTKEE
                     GVQILEEGLKNLAIMQDKLYDHNQYSVLIVLQDMDAAGKDGAIKHVISGLNPSGVKVA
                     SFKAPSSQELDHDYFWRHYKELPGRGEIGIFNRSHYENVLVTKVHPEYILGENLPGIE
                     SLKDIDKKFWEKRYKQINRFEKNLAENGTIILKIFLHVSKDEQKRRFLERIDNPDKNW
                     KFSVADAKERKLWDQYQQAYEQLLEATSTDYAPWYVLPADDKWFTRLCLGAIIYFEFE
                     RLKLSYPTVSEAHKAQLQQVKKELLAEDGGVKLKTPTARKAATAKKPAKSGK"
     gene            1329..2345
                     /locus_tag="VLL95_03720"
     CDS             1329..2345
                     /locus_tag="VLL95_03720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37995.1"
                     /translation="MIICMVFGFTQVVWAQKPVHIQSRDFFETDSLLQVRLTSDFTTL
                     QRHRTSDSFYVGTIELVQQKQAILQEKVLVRNRGKMRREICFPPPIMIDFKAINDTGT
                     LRKLGKLKLVSSCADDDYSNQLLIREYLVYKIYELFTPLSFRTRLINISYEDDKKEKF
                     SKPRYAFLLEDVDDMAKRNGYRETESRFSTPLTDRKAATLFFIFQYMIGNTDWAIPLN
                     RNLKMVYRKELPNSAPVPVPYDFDYSGLVNASYASPSEILPITNVRERYYMGFERSQE
                     EIIDALAIFRKNKMAIYETIEACPYLASDGKKDMINYLESFFRMIEQWDDVVEAFITN
                     ARKS"
     gene            2374..2808
                     /locus_tag="VLL95_03725"
     CDS             2374..2808
                     /locus_tag="VLL95_03725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR37996.1"
                     /translation="MFQEEFLQHLLKEAYSQETIEIYDVALQIVGNNDMDFVNTRSWT
                     HQLVREKLAAYADEEKTQLRITNYGRYWMIHGGYEAFLRDCLDLKEKKNAEKEQQKLE
                     LLEERLKLTQYRLMGFWLTLILSIIGLLSLGLNLYLLLSKSK"
     gene            complement(2809..3315)
                     /locus_tag="VLL95_03730"
     CDS             complement(2809..3315)
                     /locus_tag="VLL95_03730"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HSR37997.1"
                     /translation="MSLKESFLAELKFEAGNTRKLLQAMTDETLGYKPEHKAWSMAQL
                     ASHIAESYYWYVGTFASNHLDMATYKYDKGDISKAANIVAKFEENLPQAIAALESVSD
                     DSVYMQEWSMGAGDQVFLKMPRIQAVRGFLMNHLYHHRGQLSIYLRAAGCKVPGIYGP
                     SQDEQGMG"
BASE COUNT          916 a          882 c          789 g          958 t
ORIGIN      
        1 aatgacagcc gataggaagg caaccactct attgccggga taaaattttt gaggggcata
       61 caaaaattcc tgcaaaacct tttcgatccc ttttacttta aacgctacta acaatggcaa
      121 caaaagccct tatcatttcc ccgatttagc cggcttcttg gcagtggcag ccttcctggc
      181 agtgggcgtc ttcaatttga cgccaccgtc ctcagccagc aactccttct tcacttgctg
      241 caactgcgcc ttgtgcgctt cggaaactgt tggataagaa agtttcagcc tttcaaactc
      301 aaaatagata atggcgccaa gacacaaacg cgtaaaccat ttgtcatcgg ctggcagtac
      361 ataccatggc gcataatcag tggaggtagc ctccagcaac tgttcgtacg cctgctggta
      421 ctggtcccac aatttgcgct ccttggcatc ggctacagaa aatttccaat tcttatccgg
      481 gttgtcgatc cgctccagga aacgtcgctt ctgttcgtct ttcgatacgt gcagaaatat
      541 tttgaggatg atggtgccat tctctgccag gttcttttcg aaccggttga tctgcttgta
      601 ccgcttctcc cagaatttct tgtcgatatc tttcaacgat tcaatgccag gcaagttttc
      661 gccgagtatg tattcagggt gcactttggt caccagcaca ttttcataat gcgatcggtt
      721 gaagatgcca atttcacctc gaccgggcag ttctttgtaa tgccgccaga aataatcgtg
      781 gtccagttcc tggctgctgg gcgccttaaa actggccacc ttcacaccag aggggttgag
      841 accactgatc acgtgtttga tggcgccatc ttttccggcg gcatccatgt cctgtaatac
      901 gataagcaca ctgtattggt tgtggtcgta tagcttatcc tgcatgatgg caaggttttt
      961 caatccttct tccaggatct gaacaccttc ttcctttgtt accattttat ggtcataatc
     1021 cgattcaaag tcctttttca gtgacacaga tttacccggc ttcacccgaa gcgaatcaat
     1081 atatttttca aacttctgcc ggcgttgctt cttatccata tggggttttt cttaaagcta
     1141 ctcattttgc gctgcactat tcatgatttg ctgcaggtgc cattaagagt gccaagacag
     1201 gctcaaatcc cctgctgcaa tagccatacg atttggcacc tgaccacctg ttcaaaatca
     1261 ttttttacag gggtatccgt tgctaatttg cctgcgcaaa atccataggc taaatgcggt
     1321 tggcccacat gatcatatgc atggtttttg gtttcaccca ggtggtgtgg gcccaaaagc
     1381 cggtccacat tcaaagccgg gatttttttg aaaccgacag cctccttcaa gtaagattga
     1441 ccagtgattt caccacgctg caacgccatc gtacctccga ctcattttat gttggcacca
     1501 tagaacttgt gcaacaaaag caggcaatat tgcaggaaaa ggtgctggtt cgcaaccgag
     1561 gaaaaatgcg tcgtgaaatt tgcttcccgc cgcccatcat gattgacttc aaggccatca
     1621 acgatacagg caccctgagg aaactgggca aattgaaact ggtatcctcc tgcgccgacg
     1681 acgactactc caaccaattg ctcatccggg aatacctggt gtacaaaatc tatgagctgt
     1741 tcactccatt gagttttagg acaaggctga tcaacatcag ctacgaggac gataaaaagg
     1801 aaaaattcag caagccgagg tatgcatttc tgctggaaga tgtggatgat atggccaaaa
     1861 gaaatggcta ccgcgaaaca gagtcccgtt tttcgactcc gcttacagac agaaaggcgg
     1921 ccactctatt cttcattttt caatacatga ttggcaatac agactgggcc attcccctga
     1981 acaggaatct gaagatggtc tatcggaaag aactgcccaa ttcggcaccg gttccggttc
     2041 cgtatgattt tgattactca ggtctcgtta atgccagtta tgcttcgccc agcgagatat
     2101 tgcccataac aaatgtgaga gagcgctact atatggggtt tgaaagatcg caagaggaga
     2161 tcattgatgc gctggcgata ttcaggaaaa acaaaatggc catttatgaa accattgaag
     2221 cctgtcccta tttggcaagt gatggcaaaa aagacatgat caattacctc gagagttttt
     2281 tcagaatgat agagcaatgg gacgatgtgg ttgaagcctt tatcaccaac gcccgaaaaa
     2341 gctgatcgca catgtaacac aaacagccag tccatgttcc aggaagaatt tttgcagcac
     2401 ttattgaaag aagcttacag ccaagaaacc atagagattt atgatgtggc cctgcaaatt
     2461 gtgggcaata acgatatgga ctttgtaaac acccgctcat ggacacacca gctggtacgc
     2521 gaaaaactgg cagcatatgc cgacgaagaa aaaacacagc tccgcatcac caattatggt
     2581 cgctattgga tgatccatgg aggctatgaa gctttcttgc gggactgtct tgacctgaaa
     2641 gaaaaaaaga atgccgaaaa agagcaacaa aaacttgagc tgctcgaaga gcggctcaag
     2701 ttgacacaat accgattgat gggtttttgg ctcacactga tcctgagtat tattggcctg
     2761 ctctctttgg gccttaactt gtatttgctg ctcagcaaaa gcaaatgatc aacccatgcc
     2821 ctgctcatcc tgcgaggggc cataaatgcc cggcaccttg cagcctgctg cccgcaggta
     2881 aatggacaac tgcccacggt ggtggtacag gtggttcatg agaaagccac gcacagcttg
     2941 aatgcggggc atcttcagaa atacctggtc accggcaccc atgctccatt cctgcatgta
     3001 cacactgtca tcacttacac tttccaatgc cgcaatagcc tggggcaggt tctcttcaaa
     3061 tttggccaca atattggcag cttttgaaat gtcgccttta tcgtacttgt aggtggccat
     3121 atccaggtgg ttgctggcaa atgtgcctac ataccaataa tagctttcgg caatatggct
     3181 ggccagttgt gccatgctcc atgctttatg ctccggtttg taaccgaggg tttcatcggt
     3241 catggcctgc agcagtttgc gagtgttgcc cgcttcaaat ttcaattcgg cgaggaagga
     3301 ttctttcagt gacatggtgg gatgttttca caaaagttac gcctcccttt gctacaagca
     3361 aaagcttacc caacaaatta caggagtggt atgcgtttat cttgatccct cgcggatcag
     3421 tttcagtgct gcttccaaca cttcatcctt tcctgctttc aacccctcca ctgtgggttt
     3481 tacttctaca tccacacgaa tgcctttgcg ttgcgtttgc ccgccgtcgg ggtacaaaat
     3541 tccga
//
LOCUS       DATIQF010000235         8931 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_292316,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000235 DATIQF010000000
VERSION     DATIQF010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8931
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292316"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..508)
                     /locus_tag="VLL95_03735"
     CDS             complement(<1..508)
                     /locus_tag="VLL95_03735"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmE family RNA methyltransferase"
                     /protein_id="HSR37998.1"
                     /translation="MPWFYLAELPAGQLIALDENAGKHAVQVLRMQEGDSMLLTDGKG
                     QLCEGKLAQVQKKKCLVQLNHCQLISRKVERKVAIGISPLKNASRFEWFLEKATELGV
                     AEIFPLLCHRTVRSHFRMDRMQAICVSAMLQSQQAWLPVLHAPLPYHELMQRMEQVHY
                     HHRWIAHCS"
     gene            complement(581..2164)
                     /gene="dnaB"
                     /locus_tag="VLL95_03740"
     CDS             complement(581..2164)
                     /gene="dnaB"
                     /locus_tag="VLL95_03740"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HSR37999.1"
                     /translation="MDLSNIGKDKKRRIKDSPDLSTNTNLLFGKKPPQALELEEAVLG
                     AIMLEKSAFDIASELLNPSVFYDWKHQRIYSAMMGLQQNNMPIDLLTVVEELRKRGEL
                     EAVDGPYKITKLTNSVVSSAHLDTHCRILVQKFIQRELIRISGEIIGDAFEDSADAFD
                     LLDDAEGKLFEVSNSFAKRNFDEITNVLAQTVSRIEELRNKTEDISGVPSGFTELDRI
                     TYGFQPTDLIIVAARPSVGKTAFALNLARNAALHPARPTPVGVFSLEMSNAQLVQRIL
                     SAESEVSMEKIARGQLEDHEMKQLYSKGIQRLSSAPIFLDDTAALNIFELRAKARRMV
                     NKHKVGMIIIDYLQLMSGSSDNRNMNREQEISNISRSLKGLAKELNIPVIALSQLSRA
                     VESRKEGNKIPQLSDLRESGAIEQDADMVMFLYRPEYYEINSNEMGESVKGETHIKIA
                     KHRNGQLGNVKLLGQLHIQRFVDWPEEGGNPFGGTYRPIRPDEGSGGASGAALFIEKP
                     SRMNDMENFDDGFDEESLI"
     gene            2733..5183
                     /gene="pheT"
                     /locus_tag="VLL95_03745"
     CDS             2733..5183
                     /gene="pheT"
                     /locus_tag="VLL95_03745"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HSR38000.1"
                     /translation="MTISYNWLCEYLPIGKDLPAEWVEPEKLSRILTAIGLEVESLEY
                     FESLKGGLQGLVIGEVLECGKHPDADKLSVTKVSIGEGEPLQIVCGAPNVAAGQKVVV
                     ATVGSTIYPASGEPMTMKKAKIRGVESHGMICAEDEIGLSEDHGGIMVLGADAVPGTP
                     AASYFSVYTDWVYEIGLTPNRMDAMSHLGVARDVCAYLSHHHKRSLSVKSPLKGNSWK
                     VKKADTLAIDVVIENEKDCQRYAGVSISGVTIKESPAWLQDRLKSIGLRPINNVVDIT
                     NFILHETGQPLHAFDADQVTGKKVMVKNLPAGTPFVTLDEKERKLDASDLMICNGNGE
                     PMCIGGVFGGLHSGVIETTKNIFLESAWFHPVSIRRTSFRHGLRTDAAARFEKGVDIS
                     NTVNVLKRAALLIAELGGGEIASEVVDMYPNPQEKKQVAIKYHYLKKLSGKNYHPDAV
                     KNILENLGFEFVKEGLDDLWFAVPFSKPDISLPADIVEEIMRIDGYDNVEIPTAISMA
                     PSADVVGPGEALQDKVANYMVGLGFNEILTNSITNSKYYTEEVLATGVKMLNNLSADL
                     DMLRPSMLETGLESVVNNLNRKNNHLRFFEFGKTYSRQGDAFAEHKHLALFVTGQLGQ
                     AQWSQAGKEADLFYLKGVVTNLLAAIGIAKPEFTVENDAEVAGLVCSSQKTALGKLGL
                     VTPARLRSFDIKQPVLYADLDWDACLQLALKKKIEYKELPKFPAVERDLALVLDKSIA
                     YEQVEGSIAAAKISKLSAVRLFDVFESEKLGHDKKSLAINFTFQDTEKTLTDSEVEGM
                     VGKLMKIFEKELGAEIRK"
     gene            5283..5576
                     /locus_tag="VLL95_03750"
     CDS             5283..5576
                     /locus_tag="VLL95_03750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38001.1"
                     /translation="MQQDATARFQDLGNKLQQLLKFQEQLLRENEKLKQEAAQLREQS
                     EQSQQEILALKEQMAILQTAAGNMNEEEKKAFEKRINQYIRDIDKVIAHLNTI"
     gene            5581..5889
                     /locus_tag="VLL95_03755"
     CDS             5581..5889
                     /locus_tag="VLL95_03755"
                     /inference="COORDINATES: protein motif:HMM:NF017016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HSR38002.1"
                     /translation="MALEELIPITLTVGDRNYRIKVEPRHEETVRKTAKFIHEKVQEF
                     KGMYAGKDMQDYISMALIWFATQNAQQVQDQMLSQDLVEGFERLDQMMEKGLAAIPKP
                     "
     gene            6003..6815
                     /locus_tag="VLL95_03760"
     CDS             6003..6815
                     /locus_tag="VLL95_03760"
                     /inference="COORDINATES: protein motif:HMM:NF025029.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase catalytic domain
                     family protein"
                     /protein_id="HSR38003.1"
                     /translation="MKSITKAMLWLLLFGGAVKSSHAGTGKEGYEKEAAQYKMPAPYV
                     KLATDLYNEIGLMAHGLEKDIFLKAYKGYLLLVNRGLVRNQQVLSIADFSQSNQNKRL
                     YIIDLRNRKLLMQTFVSHGRNSGEEMATSFSNANNSNKSVLGFLLTADTYTGEHGLAL
                     RFRGLERGINDMVTQRAIVVHGSKFVNERELARRGEMVNSLGCPAVPMAQSKTIIHAI
                     KGGSVYFIYHPDENYARKSQILNGSLEWTWLQPAMVAAAPDSVALPANTLLQ"
     gene            complement(6898..7551)
                     /locus_tag="VLL95_03765"
     CDS             complement(6898..7551)
                     /locus_tag="VLL95_03765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38004.1"
                     /translation="MSDTITSYKPSPLLRSAAQVVSYLLHPLFVPIVVVWLLLYQHPI
                     NFLLTDGPIRLRLMAMTFINTLFLPGFVVFLLWRLKFIPNMYLESRKDRIIPLNVVLI
                     FYFWAFYIGRNLEVIPPSMQQWLLGVFLGSCLAMFVNIFTKISLHTIAAGGAVFFFAW
                     QMHIDAHWPEWWLVPVLFLAGMVGTARMLRSAHEPLEIYLGYAAGAASQAAAAFILG"
     gene            complement(7567..>8931)
                     /gene="rpoN"
                     /locus_tag="VLL95_03770"
     CDS             complement(7567..>8931)
                     /gene="rpoN"
                     /locus_tag="VLL95_03770"
                     /inference="COORDINATES: protein motif:HMM:TIGR02395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HSR38005.1"
                     /translation="EHDGKDDADLLQQEPVDAFEAPEAEDGAAAAEDEFDNPYETAEV
                     ADIDNWDPEDDVPDYQTRDINYGEGEEKTPIAMQVESNLHDLLIDQLALLELDDRKRK
                     VAEQIVGSIDEDGYLRREIPSIVDDLAFRQNVLTTEEEVEYLLKQIQHSFEPSGVGAR
                     HLQECLLLQLLRQRSEGKNVNLAIQAVKDYFDEFTKKHFEKIKKGLNINDETLREVMN
                     QLIKLNPKPGGVVGSINKAETYVIPDFFIENINGKLELTLNSRNAPELRISSDYRDML
                     REYERGSKKNKQQKDAVMFIKQKIDAAKWFIDIIKQRHETLYNSMYAIMTHQNEFFLT
                     GDETTLRPMILKDIAEKTGLDISTVSRVANSKFVQTEYGTYRLKFFFSESLSTESGEE
                     VSTREVKKILSDLVEGEDKRKPLSDDVLTDMLNEKGYNIARRTVAKYREQLNIPVARL
                     RKAL"
BASE COUNT         2146 a         2229 c         2381 g         2175 t
ORIGIN      
        1 cgctgcaatg ggcaatccag cgatggtggt agtgcacctg ctccatgcgt tgcatcagtt
       61 cgtggtaggg cagcggtgca tgcaatacgg gcaaccaggc ctgctggctt tgcaacatag
      121 cacttacaca aatggcttgc atgcggtcca tgcgaaaatg gctgcgcacc gtacgatgac
      181 agagcaaggg aaagatttcg gctacgccta attcggtagc tttttccaaa aaccattcaa
      241 agcggctggc atttttcaat ggcgaaatgc cgatggccac tttgcgttcc acttttctcg
      301 aaatgagttg gcagtggttg agttgcacca ggcatttctt tttctgcacc tgtgccagtt
      361 tgccttcgca cagttgtcct tttccatcgg tcaatagcat tgaatcgcct tcctgcatgc
      421 gcaatacctg caccgcatgt ttgcctgcat tctcatccag tgcaatcaat tgaccggcag
      481 gcagctctgc caaataaaac cagggcatat ccataccaca aagtaaaaga ggagctccgg
      541 aatggggccc ctcttttatc agaattccat gggtcgataa ttatatcagg ctttcttcgt
      601 cgaaaccatc gtcgaagttt tccatatcgt tcatgcggct tggcttttca ataaacaggg
      661 cagctccgct ggcgccacca cttccctcat cgggccggat agggcggtaa gtaccaccaa
      721 atggattgcc gccttcttca ggccagtcaa caaaacgctg tatgtgcagc tgaccgagaa
      781 gtttcacatt gcccaactgg ccgttacggt gcttggctat cttgatatgg gtttcacctt
      841 tcacgctttc acccatttca ttggagttga tctcgtagta ttcggggcgg tacaggaaca
      901 tgaccatgtc ggcatcctgt tcgatggcgc ccgattcacg caggtcactc agttggggga
      961 tcttgttgcc ttctttccgg ctttccaccg cacggctcaa ctggctcagg gcaatcaccg
     1021 ggatgttcaa ttctttggcg aggcctttga gtgaacggga gatgttgctg atttcctgtt
     1081 cgcggttcat gttgcggttg tcgctcgatc cgctcatcag ctgcaggtag tcgatgatga
     1141 tcatgcccac tttgtgcttg ttcaccatgc ggcgggcttt ggctcgcaat tcgaaaatgt
     1201 tgagagcggc ggtatcatcc aagaagatgg gagcgctgga caagcgttga atgcctttgc
     1261 tgtacagctg tttcatttca tgatcttcca gctgtccgcg ggcaatcttt tccatcgaca
     1321 cttcgctttc tgcactcagg atacgttgta ccaattgggc gttgctcatt tcaaggctga
     1381 aaacacccac cggcgtaggc ctggcagggt gaagcgcggc gttgcgggcc aggttgagcg
     1441 caaaggccgt tttacctact gaaggacggg ccgccacaat gatcaggtcg gtaggctgga
     1501 agccgtaggt gatcctgtcc agctcggtaa aaccactggg tacaccggaa atatcttcgg
     1561 tcttgttgcg cagttcttca atgcggctga cggtttgtgc cagtacgttg gtgatctcat
     1621 caaaattgcg cttggcaaag ctgttcgata cctcgaacaa tttgccttcg gcatcgtcga
     1681 gcagatcgaa agcatcggcg ctgtcttcaa aggcatcccc aatgatctcg ccgctgatgc
     1741 ggatcaattc acgctgaatg aatttctgaa caaggatgcg gcagtgcgtg tcgaggtgcg
     1801 cactgctcac taccgagtta gtaagcttgg tgatcttgta agggccatcc actgcttcca
     1861 gttcgccccg cttgcgcagt tcttccacca cggtcagcag gtcgatgggc atgttgtttt
     1921 gctgcaggcc catcatggcg ctgtaaatgc gctggtgttt ccaatcgtaa aaaacgctgg
     1981 ggttcagcaa ttcgctggct atgtcgaatg cgcttttttc gagcatgatg gcacccaata
     2041 cggcctcttc cagttccagt gcctgtggcg gttttttgcc gaataacagg ttagtgttgg
     2101 tgctgagatc agggctgtcc tttatccttc tttttttgtc ttttcctatg ttgctcaggt
     2161 ccatttacag atcaaatcaa atgggttcaa atacgagtgt ttcagtccgt ttctttccgc
     2221 ttttctacca caaaaactgc cctgcaggcc tccggctttt tccgggatta cccgcctctt
     2281 aagcgtttgc caaattcctt ggcgatggtg tgttgtggat ggtttcgaag tggaaaggag
     2341 gtcgaaggta atcggaaaaa aatgacactt tttatgaccc ggttgaaata ttttattcta
     2401 cgctcaatca catccaaacc acacttatgc caccatcaaa tacgggattt ccacaggaaa
     2461 attgcgttcc acgcacattt cacggatttt ctcaaccttt ttgcacaatt gggttgtgcg
     2521 aaaagaaatg tgaggccgaa cctgttttgt aacccgtttt taccatcgga aggatgggtt
     2581 tttccggcgg cacctgcagg cggtgaacag gcaatttgcg atcctttttc tgtgcccgag
     2641 taccccattt tcagcgcctc cgcgttcctc acatttttag tgaatcaggc cccgcccggg
     2701 cccgtatctt tgccgcccga atatttgata caatgacgat ttcatacaac tggctttgcg
     2761 agtatttgcc cattggcaag gatctgcccg cggaatgggt ggaacccgaa aaactgtcga
     2821 gaattcttac cgccatcggg ctggaagtgg agagcctgga atattttgaa agtttgaaag
     2881 gaggcctgca gggcctggtg attggcgaag tattggaatg cggcaagcat cccgatgccg
     2941 ataaactctc tgtaaccaaa gtgagcattg gcgaaggcga gcccctgcaa attgtatgtg
     3001 gcgcccccaa cgtggccgcg ggtcaaaagg tagtggtagc caccgtaggc agcaccattt
     3061 atcctgcttc cggcgaaccc atgaccatga agaaagcaaa gatccgcggc gtggaaagcc
     3121 acggcatgat ttgcgccgaa gatgaaattg gcctgagtga agatcatggc ggcatcatgg
     3181 tgctgggtgc tgatgcggtt cccggtacac ctgccgcttc ttacttcagc gtgtacaccg
     3241 attgggtgta tgaaatagga ctcactccca accgcatgga tgccatgagc catttgggtg
     3301 tggcccgcga tgtatgcgct tacttgtcgc accaccacaa gcgcagcctg tcggtaaaat
     3361 cgcctttaaa aggaaactca tggaaggtga aaaaagccga caccttggcc atcgatgtgg
     3421 tcattgaaaa tgagaaggat tgccagcgtt atgccggtgt cagcatcagc ggggttacca
     3481 tcaaagaaag cccggcctgg ttgcaggacc ggctgaaaag cattggcctg cgccccatca
     3541 acaatgtagt agacattacc aatttcatat tgcacgaaac cgggcagccg ctgcacgcct
     3601 ttgatgccga ccaggtcaca ggcaaaaaag tgatggtgaa aaatctgccg gcgggtaccc
     3661 cctttgttac cctggatgaa aaggaacgca agctggatgc aagcgacctg atgatctgca
     3721 atggcaatgg cgaaccgatg tgtattggcg gtgtatttgg cggtttgcac agcggcgtaa
     3781 ttgaaaccac caaaaacatc ttcctggaaa gcgcctggtt tcacccggtg agcattcgca
     3841 ggacctcatt ccgccacggc ttgcgtacag atgcggcggc acgttttgaa aaaggagttg
     3901 acatcagcaa tacagtaaac gtattgaagc gggctgcctt gctgattgcg gaactgggcg
     3961 gaggcgaaat agccagcgaa gtagtggata tgtacccgaa tccgcaggag aaaaagcagg
     4021 tggccatcaa gtaccattac ctgaagaagc tgagtggcaa gaactatcat ccggatgcgg
     4081 tgaaaaacat acttgaaaac cttggttttg aatttgtgaa ggaaggcctt gatgatcttt
     4141 ggtttgcagt accgttcagc aagcccgata tttcgctacc ggctgatatt gtagaagaga
     4201 tcatgcggat tgatggatac gataacgtag agatacccac cgccatcagc atggcgccat
     4261 cagccgatgt ggtgggtccg ggagaagccc tgcaggataa ggtggccaac tacatggtag
     4321 gactgggttt caacgagata ctgaccaact ccatcaccaa cagcaagtat tacactgaag
     4381 aagtactggc tactggtgta aaaatgctga acaatctcag cgccgatctg gacatgttgc
     4441 gtccgtcgat gcttgaaacg ggattggaaa gtgtggtcaa caacctcaac cgtaagaaca
     4501 atcacctgcg cttttttgag tttggcaaaa cctacagccg tcagggcgat gcttttgctg
     4561 aacacaaaca cctggcgctt ttcgtaacgg gccaactggg ccaggcgcaa tggagccagg
     4621 ccggcaaaga agccgatctc ttttacctga aaggggtggt gaccaacctc cttgccgcta
     4681 tcggcatcgc aaagccggag tttaccgttg aaaatgatgc agaagtggcc ggattggttt
     4741 gcagcagcca gaaaacagcc ttgggtaaac tgggactggt aacgcctgcc aggcttcggt
     4801 cattcgatat caaacagccg gtgctgtatg ccgatcttga ttgggacgcc tgcctgcaat
     4861 tggcgcttaa gaaaaagatt gaatacaaag agttgcccaa gttcccggcc gtggagcgag
     4921 acctcgcatt ggtgctcgac aagtccattg cttatgaaca ggtggaaggc agtattgccg
     4981 ctgccaaaat cagcaagctt tccgctgtaa gattgttcga cgtattcgaa agcgaaaaac
     5041 tgggccacga taaaaaatca ctggccatca acttcacctt ccaggatacc gaaaaaacat
     5101 tgacagattc agaagtggaa ggcatggtgg gcaaactcat gaaaatattt gaaaaggaac
     5161 tgggggctga aatcaggaaa tagcgcagta gcgatgtggg aggtgtgggc aaaatttcca
     5221 caaacctgcc ggctgctgct ttaccactga attaaaggaa caagctttat taccttgcga
     5281 ccatgcaaca agatgctaca gcccgctttc aggaccttgg caacaaacta caacagctgc
     5341 tgaaattcca ggagcagttg ttgcgtgaaa acgaaaagct gaagcaggaa gcggctcaat
     5401 tgcgtgaaca gtcggagcaa agccagcagg agattttggc cctgaaagaa caaatggcca
     5461 tactgcaaac cgctgccggc aacatgaatg aggaagagaa gaaggccttt gaaaaacgca
     5521 tcaaccagta tatccgcgac attgacaaag tgattgcgca tttgaatacg atttaacccc
     5581 atggcattgg aagaactcat tccgataaca cttaccgtag gcgaccgcaa ctatcgcatc
     5641 aaagtggaac cccgccacga ggaaaccgtg cggaaaacgg ccaaattcat tcatgaaaag
     5701 gtgcaggagt tcaaaggcat gtatgccggc aaagacatgc aggactacat atccatggcc
     5761 cttatatggt ttgccaccca aaatgcccaa caggtgcagg accagatgct cagccaggac
     5821 ctggttgagg gctttgagcg cctggatcaa atgatggaaa aggggctggc cgccattccc
     5881 aagccctgat cggcaatatt tcagcattta cagcgttttt atagcccgca cttttcgggc
     5941 ctttgggccg tttggtgcca ctacacaatg ctatcttatt gctaaccaac ctgttaaatg
     6001 ctatgaaatc cataacgaag gcaatgcttt ggctgttgct ttttggcgga gcggtgaaaa
     6061 gttcccatgc tggaacagga aaggaaggct acgaaaagga agccgctcaa tacaaaatgc
     6121 ccgctcccta cgtaaaactg gctactgacc tgtacaacga aatcgggctg atggcccatg
     6181 gcctggaaaa ggacattttc ctcaaagctt acaagggcta cctgctgctg gtaaacaggg
     6241 gactggtgcg caaccaacag gtgctgtcca ttgccgactt cagccagagc aaccagaaca
     6301 agagactgta catcatagac ctgcgcaacc gcaaattgct gatgcaaacc ttcgtttcgc
     6361 atgggcgcaa tagcggcgaa gaaatggcca cttcattcag caatgccaac aacagcaaca
     6421 agagtgtgct gggttttttg ctcacagccg atacctacac gggtgagcat gggctggcct
     6481 tgcgctttcg tggattggaa agaggcatta acgacatggt gactcaaagg gccattgtgg
     6541 tgcatggcag caagttcgtg aatgaaagag aactggcccg ccgtggtgaa atggtaaaca
     6601 gcctgggatg cccggccgta cccatggcac aaagcaaaac catcattcat gccataaagg
     6661 gaggtagtgt atacttcatt taccaccccg atgaaaacta tgcccgcaaa tcgcagatac
     6721 tgaatggcag cctggaatgg acctggctgc agcctgccat ggtggccgct gcccccgaca
     6781 gtgtggcctt gcctgcaaac acgcttttgc agtaggcatg gcgtggcttt ttgatgttga
     6841 cgaagagtgc gacgcccatg cagccgggct ttccgatacg gctgactccc aaaaaaatca
     6901 tcccaaaatg aaggctgctg ccgcctggct ggccgctcct gccgcatacc ccaggtaaat
     6961 ttccaaaggt tcgtgggcgg aacgcagcat gcgtgctgtg cctaccatgc cggccagaaa
     7021 taacaccggc accagccacc actcgggcca gtgcgcatcg atgtgcattt gccaggcaaa
     7081 aaagaaaacg gcgccgccgg cagcaatggt gtgcaggctg atcttggtaa agatgttgac
     7141 aaacatggcc aggcaactgc ccaggaaaac ccccagcagc cactgctgca tggacggtgg
     7201 aattacttcg aggttgcggc cgatatagaa tgcccagaaa taaaagatga gcacaacatt
     7261 gagcgggatg atgcggtcct tgcggctttc gaggtacatg ttgggaatga acttgagccg
     7321 ccacagcagg aataccacga agcccggcaa aaacaaggtg ttgatgaagg tcatggccat
     7381 gaggcgcagg cgaatgggcc catcggtaag caggaaattg atggggtgct ggtacaacag
     7441 caaccacacc accacaatag gtacaaacaa cggatgcaac aaatacgaca ctacctgagc
     7501 tgccgaacgc aataagggcg aaggtttgta agaagtgatt gtatcagaca tcagcatagg
     7561 ccgggcttaa agtgctttgc gcaggcgggc taccggaata ttgagttgtt cgcggtattt
     7621 ggccacggtg cggcgtgcaa tgttatagcc tttttcgtta agcatgtccg taagtacatc
     7681 gtcgctcagc ggtttgcgtt tgtcttcgcc ttccaccagg tcgctcagta ttttcttcac
     7741 ttcgcgggtg ctcacttctt cgccgctttc ggtgctcagg ctttcgctga aaaagaattt
     7801 gagacggtaa gtgccgtatt ctgtttgtac aaacttgctg ttggccaccc ggcttacggt
     7861 gctgatgtcg aggccggttt tttccgcaat gtctttcagg atcatgggcc gcaaggtggt
     7921 ttcatcgccg gtaaggaaga actcattttg gtgcgtcatg atggcgtaca tggagttgta
     7981 cagggtttca tgacgctgct tgatgatgtc gatgaaccat ttggcggcat caattttttg
     8041 cttgatgaac atgacagcgt ctttctgctg cttgttcttc ttactgcctc tttcgtattc
     8101 ccgcagcata tcgcggtagt cactgctgat gcgcaactcc ggcgcattgc ggctgttgag
     8161 ggtcagctcc agtttgccgt tgatgttctc gatgaaaaaa tcggggatca cgtaggtttc
     8221 ggctttgttg atgcttccca ccacgccgcc cggcttgggg ttgagtttta tcaactggtt
     8281 catcacctcc cgcagggttt catcattgat gttgagcccc ttcttgatct tttcgaaatg
     8341 cttcttggtg aactcgtcga aataatcttt cactgcttga atggcgaggt tcacgttttt
     8401 gccttcgctg cgctggcgca ggagctgcag cagcaggcat tcctgcaggt ggcgggcgcc
     8461 cacgccggag ggttcaaaac tgtgctggat ctgcttgagt aggtattcta cttcttcctc
     8521 tgtggtgagc acgttttgcc tgaaagcgag gtcgtctaca atggatggaa tttcgcggcg
     8581 gaggtagccg tcttcgtcga tgctgcccac gatttgctct gccactttgc gtttgcggtc
     8641 gtccagttcc agcagggcca gttggtcaat cagcagatcg tgcaggttgc tttctacctg
     8701 catggctatg ggggtttttt cctctccttc cccgtaattg atatcgcggg tctggtagtc
     8761 gggcacgtcg tcttcagggt cccagttatc aatgtcggct acttccgctg tttcgtaagg
     8821 attgtcgaac tcgtcttcag cagcggcggc accgtcctca gcttcggggg cttcaaaggc
     8881 gtctaccggt tcctgctgca gcaggtcggc gtcatccttg ccgtcgtgct c
//
LOCUS       DATIQF010000236         2799 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_49218, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000236 DATIQF010000000
VERSION     DATIQF010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2799
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49218"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..976)
                     /locus_tag="VLL95_03775"
     CDS             complement(<1..976)
                     /locus_tag="VLL95_03775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38006.1"
                     /translation="MHTYPQMDIVDFFRSVFKRNKIDIPVDTPIKGTIPNSNFTYTIL
                     PAVGYTLQTRLAVILAGNVTFKTSDDPQQKLSSIYANVAFTQNRQFTVPIQTNLWSKN
                     NRYNFVGDLRYMIYPQSTFGLGGTNDKVKDENKMTFTYLRFYETVLKEVKKDFYAGVG
                     YMLDYRWNISEEGHSDGRTSDFVLYGAQSKSVASGLALSMLFDNRPNAIYPLRGFYAA
                     ANYRYNPTWMGSNSQWQSLLLDMRKYFQLSKHMHRVLAFWSYNWIVTQGKPPYLDLPS
                     TAWDAYTNTGRGFIQGRFRSKKMLYLESEFRTDITRNGLLGAVVFANLQ"
     gene            complement(1210..1656)
                     /gene="rplI"
                     /locus_tag="VLL95_03780"
     CDS             complement(1210..1656)
                     /gene="rplI"
                     /locus_tag="VLL95_03780"
                     /inference="COORDINATES: protein motif:HMM:TIGR00158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HSR38007.1"
                     /translation="MQVILIQDVNNLGGKNELVSVKNGYARNYLIPQGLAVEASPSNL
                     KVREEKLKVAAKKEAALLAAINEVIAKLKEAPLKVGAKVGTSGKIFGSVTSVQISKAI
                     REQKGYEIDRRRITIIDDVKELGTFKASIDFGNANVAEIEFEVVAE"
     gene            complement(1758..2021)
                     /gene="rpsR"
                     /locus_tag="VLL95_03785"
     CDS             complement(1758..2021)
                     /gene="rpsR"
                     /locus_tag="VLL95_03785"
                     /inference="COORDINATES: protein motif:HMM:TIGR00165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HSR38008.1"
                     /translation="MARNEIKYLTAIRTEKRQKKYCRFKKMGIRYVDYKDAEFLKKFL
                     NEQGKLLPRRITGNSLKFQRKVSDAVKRARQMALLPYVTDLMK"
     gene            complement(2023..2379)
                     /gene="rpsF"
                     /locus_tag="VLL95_03790"
     CDS             complement(2023..2379)
                     /gene="rpsF"
                     /locus_tag="VLL95_03790"
                     /inference="COORDINATES: protein motif:HMM:TIGR00166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HSR38009.1"
                     /translation="MNNYELMVIFTPVLSEDGFAGIQKKYVDFVTEHGGSIVNSNPWG
                     LKSLAYPIQKKTTGMYWVLEYSAPSDLNEKLKIQFLRDEQVMRHLFVRLDKHAVDYNA
                     RKKSGVKASETEKAEA"
BASE COUNT          641 a          675 c          689 g          794 t
ORIGIN      
        1 tctgcaggtt ggcaaacacc acggcaccca gcaatccatt acgggtgata tctgtcctga
       61 attcactctc gaggtacagc atttttttgc ttcggaaacg gccctgtatg aatcctcggc
      121 cggtgttcgt ataggcgtcc caagcggtgg atggcaaatc caggtagggt ggtttgccct
      181 gggtcactat ccagttatag ctccagaagg ccagcacccg atgcatgtgc ttgctcagtt
      241 ggaagtattt ccgcatatcc aacaggagcg attgccattg gctattgcta cccatccagg
      301 tgggattgta ccggtaattg gctgctgcat agaatccacg cagtgggtaa atggcattgg
      361 gtcggttatc aaacagcata ctcagcgcca ggcccgatgc taccgatttg gattgggcac
      421 catacaacac aaaatcgctg gttctgccgt cactgtgtcc ttcttctgaa atattccacc
      481 ggtagtcgag catgtagcca acacccgcat aaaaatcctt cttcacttcc ttgagcaccg
      541 tttcgtaaaa gcggaggtac gtaaaggtca ttttgttttc atccttcact ttgtcattag
      601 tgccgcccag cccgaaggtg gattgcgggt agatcatata ccgcaggtcg cccacaaaat
      661 tgtagcggtt gttcttggac cacaggttgg tttgaatggg aacagtgaat tgcctgtttt
      721 gcgtgaacgc cacgttggcg taaatactcg acagtttttg ctgcggatca tcggatgttt
      781 taaaagtgac attgccagcc aggatgacgg ccaacctggt ttgcagcgta tagccaacgg
      841 ccggcagaat ggtgtaggtg aaattgctgt tgggtatggt tccttttatg ggagtgtcaa
      901 ccggtatgtc aattttgtta cgcttgaata cacttctgaa aaaatcaacg atatccatct
      961 ggggataagt gtgcacagtg tcactcttgg cagtgttggt ggagtcctga gaaaaacagt
     1021 cagaaactgc cagtaataag atgcttaata gtaagtgtct caaagttgcc gatggtattt
     1081 tcttgccctg ctcaattggt gttgcaaagt tgcatacttg cggcggtgca aagcagcaat
     1141 ggcaaaagtt tttggcaata aaaaccccgg cacttggccg gggctttcat ttttatgcgc
     1201 taaaggcaat tattcagcta ctacttcaaa ttcaatttca gcaacgttgg cattgccgaa
     1261 gtcgatagaa gccttgaagg tgccgagttc tttcacatca tcgataatgg taatgcgacg
     1321 acgatcgatc tcgtaacctt tttgttcgcg gatagccttg ctgatctgta cagaagtaac
     1381 gctaccgaag atcttgccgc tggtacctac tttagcaccc actttcagcg gagcttcttt
     1441 cagtttggca attacttcgt tgatagcagc cagcaaagca gcttctttct tggcagctac
     1501 tttcagcttc tcttcacgta ctttcaggtt gctggggcta gcctcaacag ccaatccctg
     1561 gggaatgagg tagttacggg cataaccgtt ctttacagaa accagttcgt tcttaccacc
     1621 caggttgttt acgtcttgaa ttaagatgac ttgcattttc tttttgttta gttcccagag
     1681 cccagctttc gctgtccttc cagttgcccg gagttaggga atggttactg atacagccct
     1741 ttgaagggcc atgttgctta tttcatcaag tcggttacgt aaggcagaag ggccatttgg
     1801 cgggcacgct taacggcgtc gcttacttta cgctgaaact tgaggctgtt gccggtgata
     1861 cggcggggga gcagtttgcc ttgttcgttc aggaacttct tcaggaattc agcatccttg
     1921 tagtctacat agcggatacc cattttcttg aagcggcaat acttcttctg gcgcttttcg
     1981 gtacgaatcg cggtcaggta tttgatctcg ttacgtgcca tcttatgcct ccgctttttc
     2041 ggtttctgaa gctttcacac cacttttctt acgtgcattg tagtcgacgg cgtgtttgtc
     2101 gaggcgtaca aagaggtgac gcattacttg ttcgtcacgc agaaactgga ttttcagttt
     2161 ctcattgagg tcggatggag cactgtattc cagaacccag tacatgcctg tggttttctt
     2221 ctggatagga tacgccagtg atttcagtcc ccagggattg ctgttcacga tagaaccgcc
     2281 gtgttcagtt acgaagtcta catacttctt ctgaataccg gcaaagccgt cttcgctcag
     2341 cacaggggta aaaatcacca tcaattcata attgttcatg atccctgttt ggtttaaaaa
     2401 attggttaac aatggacatg gtgccgtatc aggtacacca cgaattcggt catttcagcc
     2461 gaatttgggc ggcgaaggta ggggtttcac ccgctgcagc caaacaaaac tccagcaaat
     2521 ccaagggttt cagggcattt tttggatttt ttaggggctt tcaaccgctt ccatggaccc
     2581 ggcagcggtt cggcgtcctc caggccaggc cctgcgggct gggcctcgct atggcgcggc
     2641 ccaccttgcg gccgccgcag cctgtcagcc aggtgcaaat gccagcggcc gccagacaat
     2701 aacccaaatc cgccaggtaa taattgcaac ttaccatcgc cggttgccat gggtagtttc
     2761 ggtttcaaat accaaacacc atgaaatctt tacttactt
//
LOCUS       DATIQF010000237         2291 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_292374,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000237 DATIQF010000000
VERSION     DATIQF010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2291
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292374"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..311
                     /locus_tag="VLL95_03795"
     CDS             <1..311
                     /locus_tag="VLL95_03795"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR38010.1"
                     /translation="YVREEKVIDLMTALEKMTLLPARRLENIAPMMRFKGRIQVGADA
                     DITIFNAETVTDKATFEKGLAFSEGVEYVMVNGTFVLKNGTTVQGVMPGQPVYGKFKK
                     "
     gene            366..1415
                     /locus_tag="VLL95_03800"
     CDS             366..1415
                     /locus_tag="VLL95_03800"
                     /inference="COORDINATES: protein motif:HMM:TIGR01879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-dependent hydrolase"
                     /protein_id="HSR38011.1"
                     /translation="MQRRTFLKETTLTTVGMSVFGSLLSNHRLPGSGLAVNGKRIESR
                     IFELAKFGVDEKGRGYRVAYTKGDIEGRAWFMDLMKKAGLNPTIDTAGNIIGQRKGKN
                     PSLKPIGFGSHIDMVPDGGIYDGTLGSIAALEVIEILNENNFVTEHPLELIIFANEEG
                     GTIGSKAMTHGLTKEGLQQISQSGLTHADGIKALGGNPENLAACLRNKGAFSAWLELH
                     IEQGGILEREKIQVGVVEGIVGIVHWEVTVEGFANHAGATPMNMRQDALLAASKFVIA
                     VNEVINSVKGSQVGTIGKIAVQPGAYNVIPGKVVLGLEIRDLSAEKIEMLFRDIEKRA
                     AGIAQESGTKISFTR"
     gene            1428..1685
                     /locus_tag="VLL95_03805"
     CDS             1428..1685
                     /locus_tag="VLL95_03805"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSR38012.1"
                     /translation="MPALTDKKLQQVIDATAKSLGFTTKFMQSGAGHDSQHMASIAPS
                     AMIFIPSIGGISHSPKEFSTATDMANGANVLLQTILNIDKA"
     gene            1693..>2291
                     /locus_tag="VLL95_03810"
     CDS             1693..>2291
                     /locus_tag="VLL95_03810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38013.1"
                     /translation="MQEEEKKEQSPPEEEAAQQLDTKSTDESNANVDDKSTPIEQQPD
                     SNQNLETANMKAHYHSNHEHGKKNWKSSFREFLMLFLAVFSGFLAEYKLEHIIEHQRE
                     RKYAQTLYEDLKVDTSILAFHIREVNFIIPKIDTFRWLVHTKAIDEIPAGTWMYYGRF
                     PTFQPLVSLQDATMQQLLSSGGLRLFQKQNVADAIARYS"
BASE COUNT          675 a          533 c          573 g          510 t
ORIGIN      
        1 aatatgtacg ggaagaaaaa gtgattgacc tgatgactgc tcttgaaaag atgacgctgc
       61 tgccagccag gcgtttggaa aatattgctc ccatgatgcg cttcaaagga agaatacaag
      121 tgggcgccga tgcagacatt actattttca atgcggagac tgtgacagac aaagcaacct
      181 ttgaaaaagg gctggcgttt tccgaagggg tggaatatgt gatggtgaat ggaactttcg
      241 tattgaagaa tgggactaca gtgcaaggcg tgatgccagg acagcctgtt tatggtaagt
      301 ttaagaagta aattgctgtt gtcaacaagg gaaccattca attagaaaca aactgcccag
      361 tagttatgca acgcagaaca ttcctgaaag aaacaaccct cactacagtg gggatgagtg
      421 tattcggctc tttgctttcc aaccatcgct tgcccggctc cgggttggca gtaaatggaa
      481 agcgtattga aagccgcatt tttgaactcg ccaaattcgg cgtagatgaa aaaggccgtg
      541 gctaccgcgt agcctacacc aaaggcgaca ttgaaggccg tgcctggttc atggacctga
      601 tgaaaaaagc aggactcaat cccaccatcg acaccgcagg caatatcatt ggccaacgca
      661 agggcaaaaa tccatcgctc aaacccattg gcttcggttc ccatatcgac atggtgcccg
      721 atggcggcat ctacgatggt acgttgggat ccattgccgc attggaagtg attgagatac
      781 tcaatgaaaa caacttcgta acggagcatc ctcttgagct gatcattttc gccaatgaag
      841 aaggcggcac cattggcagc aaggccatga cccacggatt gacgaaagag ggactgcagc
      901 agatcagcca gagtgggctt acacatgctg acggtatcaa agcccttggc ggtaacccgg
      961 aaaacctggc agcctgcctg cgcaataaag gcgccttttc tgcctggtta gaactgcata
     1021 ttgagcaggg cggcatcctg gaaagagaga agatacaggt tggcgtagta gaaggcattg
     1081 taggcatcgt tcattgggaa gtgacagtgg aaggttttgc caaccatgct ggcgctaccc
     1141 ccatgaacat gcggcaggat gcgttgctgg ccgcttctaa attcgtgatc gccgtaaatg
     1201 aagtcatcaa cagtgtaaag ggcagccagg taggcaccat tggcaagatt gccgtacaac
     1261 ccggcgccta caatgtcatc cccggcaaag tagtgttggg gttggagatc cgcgatttgt
     1321 cggccgaaaa aattgagatg ctgtttcgcg acattgaaaa acgtgccgcc ggcattgcac
     1381 aagaatcagg caccaagatc agttttacac ggtagcctaa tgaatccatg cctgcactga
     1441 ctgacaagaa attgcagcag gtcattgatg ccacggcaaa gtcactgggc ttcactacta
     1501 agtttatgca aagtggtgcc ggccatgatt cgcagcacat ggcgtccatc gcaccatccg
     1561 ccatgatctt cattcccagc attggcggca tcagtcattc gcccaaagaa ttttccaccg
     1621 ccacagacat ggccaacggg gcgaatgtgt tattgcaaac gattttgaat atagacaaag
     1681 cataaatctc ctatgcagga agaagaaaag aaagagcagt caccaccaga agaggaagca
     1741 gcgcagcagt tggatacaaa gtcaactgat gaatccaatg ctaatgttga cgacaagagc
     1801 actccaattg agcagcaacc cgacagcaac caaaacctgg aaaccgccaa tatgaaagcg
     1861 cattaccatt caaaccatga gcatggcaag aagaattgga agagttcttt ccgggaattt
     1921 cttatgctat tcctcgctgt attcagcgga tttctggctg agtataagct tgagcacata
     1981 atagagcacc agcgggaaag aaaatatgct caaacattat atgaagatct aaaagtagac
     2041 acctccatat tggcttttca tatcagggaa gtaaacttca taatacccaa aatcgacact
     2101 tttcgatggt tggttcatac caaggccatt gatgaaattc cggcaggcac atggatgtac
     2161 tacggaagat ttcccacatt ccaaccattg gtatccctgc aggatgctac catgcagcag
     2221 ttgcttagtt caggtggact ccggttgttt caaaagcaaa atgtggccga tgccattgcc
     2281 cgctacagcc a
//
LOCUS       DATIQF010000238         2914 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_94664, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000238 DATIQF010000000
VERSION     DATIQF010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2914
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94664"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1957
                     /locus_tag="VLL95_03815"
     CDS             <1..1957
                     /locus_tag="VLL95_03815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38014.1"
                     /translation="IRANTIFGNSLFSNNGTGTFNEADQPENANTYNGNTAFIATNTG
                     TLNISAVSKSNFNGNLGISRDAAGITTAFGGGADISGDFLFVNTFGGATTLGNKNIRN
                     TNIAGKIDIIAQYATSGTFSMYRVVNHTGGGNITLQNTAGFDIYRDTLQLNELSITGY
                     KDAYAHLENNKITGNIEIADDPTNGNNYFTYIRSNYVVGNSAFACNGTNAFLDADQVG
                     SINRYFGNVLYAKGTTGAINIGSGDTTIISGNLSLSSGTGIAINKVKFIGNNNSTFEQ
                     SGSQVMQITELIIQKSGAQYSLILEDSITMMGKLTFIKGHIISANGKELIFAKTGSSN
                     GASDQSHVIGPVVKLGNAAFTFPVGNDNYLQALSMTAPGTNLDRYRCIYFFSSPHPTY
                     DTALHASSILAMGNCEYWSFEREAGSSQLKLTFEFGSPCGEVYNPAALRVARWSGSTW
                     EDLGNSLYWGMGLQGAVTHANPINSFGIFTLASASVTEPYLKIRQNPANPVCIKHVVE
                     FSYEEIYLPGQSPSYLWLKNNSPVGTNSLSYIDSTLKDGDSIVCLMTSSFQFTFPPVT
                     RSNVLCISTTHFNTWMGGVSNDWFNRWNWSCYSVPFESTDVVINPGTPYSPSIGAGIA
                     KCRSLLIKTGASVQVAPNAKLEVTQQQ"
     gene            2086..2322
                     /locus_tag="VLL95_03820"
     CDS             2086..2322
                     /locus_tag="VLL95_03820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38015.1"
                     /translation="MELRTPASVLQEALFKISMLYEEQPNQAMFAVRNYFTGEEDAAL
                     ERTGLWQRLGDFLAPTESNLYYRYLYNKNQRRAG"
     gene            2397..>2914
                     /locus_tag="VLL95_03825"
     CDS             2397..>2914
                     /locus_tag="VLL95_03825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38016.1"
                     /translation="MQLIQFTDKGLYCPAGDFYIDPWRGVERAIITHAHSDHARYGSR
                     YYLCHHHSKPLLHLRLGAANNIQGIGRNEPVLMNGVKVSLHPAGHIIGSSQIRIEYKG
                     EVWVITGDYKLENDGLSGSWEPVKCHTFLTESTFGLPVYQWQPQSAIYASMQQWVLRN
                     QQEKLSSVLVAY"
BASE COUNT          801 a          740 c          684 g          689 t
ORIGIN      
        1 tatccgtgcc aataccattt ttggtaacag cctgttctcc aacaatggca ctggtacttt
       61 caacgaagcc gatcaacctg aaaacgccaa cacctataat gggaacactg cattcatagc
      121 tacaaacact ggcacactca acatcagtgc cgtaagcaaa tccaacttca atggcaacct
      181 gggcatttca cgtgatgctg ccggtattac cactgcattt ggtggaggag ctgacatttc
      241 aggcgatttt ctttttgtaa acacctttgg tggcgccact acgctgggta acaagaacat
      301 tcgcaacacc aacattgcag gcaaaattga catcattgca caatacgcca ccagcggcac
      361 attttccatg tacagggtag ttaaccatac cggcggtggt aatatcactt tacaaaacac
      421 cgcaggtttt gatatttaca gggatacctt acaactcaat gagctttcga taacaggtta
      481 caaggatgcc tatgcgcatt tggaaaacaa caagatcacc ggcaacattg aaatagcaga
      541 tgaccccacc aatggcaaca attatttcac ctatatccgg agcaactatg tggtgggcaa
      601 cagtgctttt gcctgcaacg gcaccaatgc ctttctcgac gcagaccagg taggatccat
      661 caaccgctat tttggtaatg ttctatatgc gaaaggaacc accggtgcta ttaatattgg
      721 cagtggcgac actactatca tcagtggaaa tctttcattg agttccggaa caggtattgc
      781 tatcaataag gtaaagttca ttggaaataa caacagcacg tttgaacaat cgggaagcca
      841 ggtcatgcaa atcacagagc tgatcatcca aaaatcgggt gcacaataca gcctcattct
      901 ggaagacagc atcaccatga tgggtaaact cactttcatc aaagggcaca tcatttccgc
      961 caatggaaag gaattaatat ttgccaagac gggaagcagt aatggtgcat cggatcaaag
     1021 tcatgtgatt ggacctgtag taaaactggg taatgctgca tttacatttc ctgtaggcaa
     1081 cgacaactac ctgcaggcac taagcatgac agcacccggc accaatctcg atcgttaccg
     1141 ctgcatttat ttcttttctt ccccacatcc cacctatgat acggctttac acgcctcaag
     1201 tattttggcc atgggcaatt gcgaatactg gagttttgaa agggaggccg gaagcagcca
     1261 gctcaaactc acatttgaat tcggcagtcc ttgcggcgaa gtgtacaatc cagccgcctt
     1321 acgggtggca cgctggagcg gcagcacatg ggaagacctg ggcaacagcc tctattgggg
     1381 catgggattg cagggcgccg ttacccatgc caatccgatt aacagctttg gcatcttcac
     1441 actggcctct gcgtcagtaa cagagcctta cctgaaaatc aggcaaaatc ccgccaaccc
     1501 tgtgtgcatc aaacatgtgg tggaattttc ctatgaagaa atctacttgc cgggacaatc
     1561 cccatcgtac ctgtggctga agaacaattc accagtaggc accaacagtt tgagttatat
     1621 tgacagcact ctaaaagatg gtgattcgat cgtgtgcctg atgaccagca gtttccagtt
     1681 caccttccca cctgtgacgc gaagcaatgt gctctgcatc agcacaacac acttcaatac
     1741 ctggatgggt ggcgtgagca acgactggtt caatcgctgg aactggagtt gctattccgt
     1801 acccttcgag tcaaccgatg tggtgatcaa cccggggact ccatacagcc cctctattgg
     1861 tgccggcatt gccaaatgca gaagtttgct gattaaaacc ggtgcctccg tacaggttgc
     1921 tccgaacgcc aaacttgagg ttacacagca gcagtaggga aaaccaggcg tgaaacaatg
     1981 tttggccata aattcacgtg gggtgcataa ctgtaccctc gctttcaaaa gggaatgagg
     2041 gaatttcagg gaactgaatg atcagtaccg caaaactccc ggcttatgga actaagaacc
     2101 cccgcttctg tattgcagga agcccttttc aagatctcga tgttgtacga agaacagccc
     2161 aaccaagcca tgtttgccgt tcgcaattat ttcaccggtg aagaggatgc cgccctggag
     2221 cggaccggtt tgtggcaacg tttgggcgac ttcctggctc caaccgaaag caacctctac
     2281 tatcgttacc tctacaataa gaaccagcgc cgtgccggtt aaaaaatgaa gggcgcttaa
     2341 cctttctctt gctggcttgt tgcattttgg ccttacttag tacggtcatc agcagcatgc
     2401 agcttataca gtttaccgac aaaggattgt actgcccggc cggcgatttc tacatcgatc
     2461 cctggcgggg tgtggagcgt gccatcatca cgcatgccca cagcgaccat gcccgttatg
     2521 gcagccgata ttatttgtgc caccaccaca gcaaaccatt actgcacttg cgactgggcg
     2581 ctgccaacaa catacagggc attggccgga atgaacccgt gttgatgaat ggggtgaaag
     2641 tgtcgctgca ccccgcgggc catatcattg gcagttcgca aataaggatt gaatacaaag
     2701 gggaagtttg ggtgataacc ggcgactaca agttggaaaa cgacggcctg agtggcagtt
     2761 gggagcccgt aaagtgtcat acgttcctca cagaaagcac tttcggattg ccggtgtacc
     2821 aatggcagcc gcagtcggct atttatgcca gcatgcaaca atgggtgctt cgcaaccagc
     2881 aagaaaaatt gagcagtgta ctggttgcct acag
//
LOCUS       DATIQF010000239         1783 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_18820, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000239 DATIQF010000000
VERSION     DATIQF010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18820"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..437
                     /locus_tag="VLL95_03830"
     CDS             <1..437
                     /locus_tag="VLL95_03830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38017.1"
                     /translation="YRTYVNLKKSRPRNVLAFWTYGWFVTSGTSPYLALPAIGWDMFA
                     RSGRPYTQGRIRGEDLMYGEAEWRFPLQKTKNKWGAVLFMNASTASSRTENINLFSNF
                     VLGYGGGLRFMLNEKKRVNLGLDYGFGANGAQGLFLNLNEYF"
     gene            889..>1783
                     /locus_tag="VLL95_03835"
     CDS             889..>1783
                     /locus_tag="VLL95_03835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38018.1"
                     /translation="MEIPFDLITLVHLAAAVIGIVSAIVIFYFGIKSNPANQPLGIGQ
                     MAISLAIFISFSLVSGLIVQWPFMYRLGNAFALVFIPMPFLHVAFYTRNRQWKWYDLL
                     HALPLILYLIDFWHVLSLSNAEKLALLKEDLADLDVLSQFSQSKYFGPGFHSQFRTIL
                     FSGYWLAQVLMLMKWLKPQTTMSRQSRVWKNWMKVFLGCQFFMWFPFYLSLLGLNIMT
                     SYQIFNSFSILWLMVSSFSLFFFPTLLYPRLYEPPSAAGHKPQRKGALPPAVDIKNTQ
                     TMSAIEEWVNNHQPYLKPGYSI"
BASE COUNT          424 a          436 c          400 g          523 t
ORIGIN      
        1 agtaccgcac ctatgtgaac ctgaaaaagt cgcgtccccg gaatgtgctc gcattctgga
       61 cctacggttg gtttgtcacc agcggcactt ctccctacct ggcattgcct gccattggat
      121 gggatatgtt tgcccggtcg ggaaggccct atacccaggg cagaatccgg ggtgaagacc
      181 tgatgtatgg agaggctgaa tggcgttttc ccttgcaaaa gaccaagaac aagtggggag
      241 cggttctgtt catgaatgcg tcgaccgcca gcagcagaac ggagaacatc aacctgttca
      301 gcaacttcgt actgggttat ggcggtggcc tgcggttcat gctcaacgaa aagaagcggg
      361 tgaacctggg tcttgactat ggctttggtg ctaacggcgc acaagggttg ttcctgaacc
      421 tcaatgagta tttttaaggc attcagtttt agggtgtccg gaactacctg aaacaataac
      481 ttccccgtca ttcttcatcc gggactggcg gaatggacat tatttgccac aatttttctt
      541 tagcctcatt tgacccagcc aaacatttca ctgtttccca ggcaagcaca aagtcctggt
      601 tatatctgag gaaaggaagc atttgttaca cctttggtgt tttaacatga ttattgtatc
      661 aagggccggc agaaatgctg gcccttgata aatttaaagc ctcccgatcg atcaaagttt
      721 cttccaccgg gccattcatt gaatgagact ccggttgaac tggttgatac aagcgggttg
      781 gcaggaacag tggcttcagc cagtattccg ttgctgtttt tgtgccccct tgtataccaa
      841 tcttttctaa attgcggaac aaatagacat actcactttt tggcttctat ggaaataccg
      901 ttcgacctta ttacactggt tcatttggcc gctgctgtaa taggcattgt ttccgcaatt
      961 gtcattttct atttcggtat caaatccaac ccggccaacc aaccacttgg cattgggcaa
     1021 atggcgatat cactggctat tttcatcagc ttttcgttgg tttctggcct cattgtccag
     1081 tggccattta tgtacagatt aggcaatgcc tttgcccttg tctttatccc catgcctttt
     1141 ttgcatgtgg ctttttatac ccgtaaccgg caatggaaat ggtacgactt attgcacgcc
     1201 ctcccactca tattgtacct gattgatttc tggcatgtac tatccttatc caatgcagaa
     1261 aagctggccc ttttaaaaga ggatttggcc gatcttgacg tactgagtca atttagccaa
     1321 agcaaatact tcggccccgg gtttcattcc caattccgca ctatcctgtt tagcggatat
     1381 tggctagccc aggtgctgat gctcatgaaa tggttaaaac ctcagaccac tatgtcgcga
     1441 cagagcaggg tctggaaaaa ctggatgaag gtgttcctgg gttgccaatt tttcatgtgg
     1501 tttccgtttt acctcagttt gttgggtttg aacataatga cttcctacca gatttttaat
     1561 agcttttcca ttttatggct catggtttcg agcttttccc ttttcttttt tcccaccctg
     1621 ctctacccca ggttgtacga accaccatct gctgccggac ataaacccca acgaaaagga
     1681 gccttgcccc cagcagtcga cataaagaac acccaaacta tgtcggccat agaagaatgg
     1741 gtaaataacc atcagcctta tttgaaaccg ggctatagca tcg
//
LOCUS       DATIQF010000240         5129 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_3501, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000240 DATIQF010000000
VERSION     DATIQF010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5129
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3501"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(478..936)
                     /locus_tag="VLL95_03840"
     CDS             complement(478..936)
                     /locus_tag="VLL95_03840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38019.1"
                     /translation="MADIKTIAAQFENHTLPKEQWTHQAHIAVAFAHIEKYKNEELAL
                     QSLRQGIKGYNDAVGTANTDTSGYHETLTVFWLRVISEYATQKKDDDMGGKFEAFLQT
                     FLSSPQFPARFYSKDLLFSTTARHAWAAPDLLPLSALEELVSGTIADGAT"
     gene            complement(1103..2545)
                     /locus_tag="VLL95_03845"
     CDS             complement(1103..2545)
                     /locus_tag="VLL95_03845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38020.1"
                     /translation="MKGSTSKWATAICLLLFLMGSTPRTYAQGSEPYGQGLRLDLDTS
                     GHRYLRLIIWNQIWMRSIQHNPGSIVNEQPVSNTWDISARRLRLLAYAQITPRYLILA
                     HIGINNQTFVTGGAPGTSGTGPNGAGKKPQLFFHDAWNEYAVIPLINPKTGLRNKYSL
                     YFGAGLHYWWGLSRMSSASTLNFLALDAPIVNWPLVETSDQFVRQFGMYVKGKWGKLN
                     YSMHLNKPFATNNTPPDPDPIKGPTAVDNNGNSKPGVGGYFDYQFLDQEENLLPFRVG
                     TYVGTRKIFNIGAGFYHNQDGTLSKNVVNNIETFDKHNITLLGADVYTDMPVGNPSKR
                     MAVTAYSVFYNYNFGPNYLRTIGIMNPSSGFDPNMPASERTLNGPGNSRMFVGTGNIW
                     YTQAGFLLPGASHNKVRLQPFAAYTMKKLKALDQTGHYYDVGFNLFLDAHHAKFTPQY
                     STRPLFYESNGKRVINGRKGEFMLQFQVYL"
     gene            complement(3371..4588)
                     /locus_tag="VLL95_03850"
     CDS             complement(3371..4588)
                     /locus_tag="VLL95_03850"
                     /inference="COORDINATES: protein motif:HMM:NF014542.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HSR38021.1"
                     /translation="MTTSKPIQKLPVTVLSGFLGAGKTTLLNHVLHNKEGMRVAVIVN
                     DMSEVNVDARLVSEQNVLSRTEEKLVEMSNGCICCTLREDLMTEVEKLANEGRFDYLL
                     IESTGISEPVPIAQTFSFVDDEKGIDLSSFSYIDTMVTVVDCFNFFNDFCSNERLSDR
                     QLTDIQGDFRTIVNLLTDQIEFANVIILNKTDLVDEPTVGLLHAAIKKLNPGARIITS
                     TFGKVPPSEILNTKLFDFDEAQASAGWQKELEGGAHTPETEEYGITSFVFRNQKPFHP
                     ERFWKYLNEEYPNGVIRAKGLFWLASRPNEAINFSQAGGSSRLERAGVWWVSMPFSER
                     IKYQSFVDNQDYIEGKWHKQWGDRMNELVFIGQNIDKEKMLADLEACLLQENEPLQYD
                     TQQLINDPFPKDM"
BASE COUNT         1230 a         1097 c         1302 g         1500 t
ORIGIN      
        1 gttgtcatca gtggtgcccg agaatttgta gccattggta tgcacggtgg cggccgaaat
       61 gggaagttgc gattcgctgt tgcgaatttg cagccggatg ggctggtttt gtgcaacggc
      121 cacgaaagag agaagtagga aaggaatact gagaaagcgt ttcatagggg tgtggttact
      181 tatactcaat cgagccgggt tgcggcggca aagtatgtct gctgggaagg gtgggcatcg
      241 gtttaaattc taccgatgac ctttgcaggg tggcaggggc gcttgctgga attcatttct
      301 ttgctccgct gtcatgcctg cttgcggtaa ttgtcagatg ccttttcccg gctccttact
      361 ttcgtttccg gctactggtt ttagtcgttc aaatatcgtt cccggtcacc aaagtttcaa
      421 gtattcccat tggattattt tttctttacg acagcggggc attcatgctt ttcctgctca
      481 cgttgcacca tctgcgattg ttcctgaaac cagttcttcg agggcggaca agggaagcag
      541 atcaggggct gcccaggcat gccgggcagt ggttgaaaac agcagatctt tggaatagaa
      601 cctggccgga aattgtggcg aggaaagaaa agtttggagg aaagcttcga attttcctcc
      661 catgtcatca tccttttttt gtgtagcgta ttcgctgatc accctcagcc aaaaaacagt
      721 gagcgtttca tggtagcctg aggtatcggt gtttgcagtg cccaccgcgt cgttgtaccc
      781 ctttatgccc tgccgcaggc tttgcaatgc gagttcctcg ttcttgtatt tttcaatgtg
      841 ggcaaaggcc acggcgatat gcgcctggtg cgtccactgc tctttgggaa gggtatgatt
      901 ttcgaattgt gcagcaatgg ttttgatatc tgccatacaa gcctggttga tttgttagtc
      961 gatgccaatc aaaaaaagga aatggacact gccgtcattt gctgtttttt tgttttgctg
     1021 cacaatactt cgggagcaag gatctccctt gctacagcca gccgggcatg aagctgccac
     1081 ccttatatcg cttcgatggc gcttacaaat acacctggaa ctgcagcatg aattctcctt
     1141 ttctgccgtt gatcacccgc ttgccattgg attcgtaaaa caaaggacgg gtgctgtatt
     1201 gaggtgtaaa cttggcgtgg tgtgcatcca ggaaaaggtt gaagcccaca tcgtagtagt
     1261 gtcctgtttg gtccagtgct ttcagttttt tcatggtgta ggcagcaaag ggttgcagcc
     1321 ttactttgtt gtgggaggcg ccgggcaata agaagcctgc ctgcgtatac cagatgttcc
     1381 cggttcccac aaacatgcgg ctgttgcccg gtccgttgag ggttcgttcg gaggccggca
     1441 tgttagggtc aaaaccactc gatgggttca tgatgccaat ggtacggagg tagttggggc
     1501 caaagttgta attataaaaa acggaatagg cggtcacggc cattcttttg gaggggttgc
     1561 ccactggcat atccgtatac acatcggcac cgagcagggt aatgttgtgc ttgtcaaatg
     1621 tttcaatgtt attgaccaca tttttgctga gtgtgccatc ctggttgtga tagaagccgg
     1681 cgccgatatt gaatattttt cgggtgccta cataagtacc caccctgaaa gggagcaggt
     1741 tttcttcctg gtccaggaac tggtaatcaa aatagccgcc aacacctggt ttcgaattgc
     1801 cgttgttatc taccgcagta gggcctttga tgggatcagg atcagggggc gtgttattgg
     1861 tggcaaaagg cttgttcaaa tgcatgctgt aattcagctt gccccatttg ccttttacgt
     1921 acatgccaaa ctgccgcaca aactgatcgc tggtttcaac aagcggccag tttacaatgg
     1981 gggcatcaag ggcaaggaag ttcagggttg aagcggaaga catgcggctc aagccccacc
     2041 agtaatgcag gccggccccg aaatacaggc tgtatttatt gcggaggcct gttttgggat
     2101 taataagtgg aatgaccgca tattcattcc aggcatcgtg aaaaaacagt tgtggctttt
     2161 tgcccgcacc atttggcccc gtgcctgatg tgccgggtgc accgccggtt acgaaggttt
     2221 ggttgttgat gcctatatgc gccaaaatga gatagcgggg cgttatctgg gcataggcca
     2281 gcaaacgcag gcgccttgcg cttatgtccc aggtgttgct tacaggctgc tcatttacga
     2341 tgctgcctgg gttgtgctgt atgctgcgca tccatatttg attccatatg atgaggcgca
     2401 ggtagcggtg gccggaggtg tcaaggtcta gtcgcaagcc ctggccatag ggctcagagc
     2461 cctgggcata ggttcggggc gtacttccca ttaagaaaag aagcaggcaa atggcagtgg
     2521 cccattttga tgtgcttcct ttcaaacaaa aacgattttt catggtgtgg cgtttcaaag
     2581 caggtccgtg gtgacggtag tctggattgg ttggctggta aattaatagg tcattgaggc
     2641 tcaataaaag tagaacaaaa acagcgtgag gaacagacaa aattgacaga aggatggagg
     2701 aaaagatgat ccacttgtgt aatgagtttt ttgtgcaggg ccgcgtaact gggggaggaa
     2761 ctgacttttt gaagtcacac tatttcggac gccttgctcc gaaaggatca agctttttcg
     2821 ataaggaatg tggaagtacc cggtaatctc agtattcgtg aatcttattt ccttgaattg
     2881 actgctgtta ctgttttcac caaccgacac gaaagcaacg tcattattgc cttgaaaccc
     2941 tatgccttca ggatccatgg tggcaaggtc atttatacaa aatgccatca tcggatggca
     3001 ttttgatttt tacaaaaggt cttgtcttga gtccagaaat tctgcccagt actgtattgc
     3061 aatcaatttg actgtgacaa tgtagagcga aggtttcttt ctttcatcga atagattgcg
     3121 acgttaatgg cagaattata tactgtccgt tttgctcaat aagtatgccg gttacggata
     3181 caaggcccgc aggaataatc ctgttgcgga aaccggcaaa cgattctgtt ctcaccatag
     3241 ccgtgcgtac aacatctgat aaaatgaagt cgatcaggga actggcagct gcaataagcg
     3301 tggctggaag ctttttcatc aacagcttta cgcttgtttc tcttgcttat gaatacacca
     3361 aagcagatgg ttacatatct tttggaaatg ggtcattaat caattgttgg gtgtcatatt
     3421 gcaatggctc gttttcctgc aataagcatg cttcaagatc ggcgagcatt ttttctttgt
     3481 caatgttctg tccgataaat acaagttcat tcattcggtc gccccattgt ttgtgccatt
     3541 tgccctcaat ataatcctga ttgtcgacaa acgattggta ctttatgcgt tcgctgaaag
     3601 gcatgcttac ccaccataca ccagctcttt ccagccgaga ggaaccacct gcctggctga
     3661 agttgatggc ttcattcggt cttgaagcca accagaaaag ccctttggcc ctgattactc
     3721 cattgggata ctcttcatta agatatttcc agaatctttc cggatgaaat ggcttctgat
     3781 ttctgaagac aaaagaggta atgccatatt cttcggtttc tggtgtgtgt gccccgcctt
     3841 ccagttcttt ttgccatcct gcagaagcct gcgcttcatc aaagtcgaag agttttgtat
     3901 ttagtatttc gcttggcggt acttttccaa aagtggaagt tattattctc gccccagggt
     3961 ttagtttttt tatggcagca tgaagaagtc ctactgttgg ttcatcaacc agatctgttt
     4021 tgtttaggat tatgacattg gcaaattcaa tttggtcggt cagcagattt acaatagtcc
     4081 tgaaatcccc ttgaatatcg gtcagttgtc tgtctgaaag gcgttcgttg ctacagaaat
     4141 cattgaagaa attgaagcaa tccaccaccg tcaccatggt atcgatgtag ctgaatgaag
     4201 ataagtcgat gcctttttca tcatccacaa agctgaaggt ttgtgcaatg ggaacaggtt
     4261 cactaatgcc ggtgctttca atgagcaagt agtcaaatct gccttcattg gctaattttt
     4321 ctacctctgt cattaggtct tcacggaggg tgcagcaaat gcagccgttg ctcatctcta
     4381 ctaatttttc ttccgttcgt gagagcacgt tttgttcact cacgagcctt gcatctacat
     4441 tcacttcact catatcattc actattacag ctactctcat gccttctttg ttgtgaagca
     4501 catggttgag cagtgttgtc tttcctgctc caagaaatcc gctcaatacg gttactggta
     4561 gtttttgaat tggttttgat gtcgtcattc taaagtttga gtctttgaat tggattttgg
     4621 tgatatcgat ggatgtgctc cttgatcttg tactaccttg ttaaaaatgg accaccgaag
     4681 tatggctccc ttgtggccac atttccccgc tgtgcccggt aattcggtct tagtgtttgg
     4741 atgccgtggg gtatgagagg cctacagcaa gaatgtgaaa gttgaaagga ggttttggca
     4801 cagatgggcc caggtgtgga gagacatatt gcgcaacatt ggatgcacgc aaatagatac
     4861 aacaagcgtt tgtgtgggtt ttcatattta tcatttttcg gagcatttcc tgcattgcct
     4921 gatgttcaga atgtgccctg ctatcaacag gacggcaaat aagtgtcctg aataatggag
     4981 ccaatgataa tcttccctga ataaggtgga aaacagaaat ccccaaaacg atgtccaaag
     5041 cagtagggca atgcccgtgt gagtgtcaaa ttcggttgct ttgtaaactg atgcgaaaga
     5101 gatgatgaga aagggaaaat tgaaaaagg
//
LOCUS       DATIQF010000241         3228 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_246845,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000241 DATIQF010000000
VERSION     DATIQF010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3228
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246845"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2492)
                     /locus_tag="VLL95_03855"
     CDS             complement(<1..2492)
                     /locus_tag="VLL95_03855"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase PknK"
                     /protein_id="HSR38022.1"
                     /translation="MAEQLIYESKKSKIYLVDNNEWNQPVALKILNYEFPTPSDIAQF
                     YNEFDVISGLSLKGIRNVLKKTKEKNRHALYLEWFKAVTFKEAFQKQREDIIDFLHIA
                     IASAQAISEIHQHSIIHKDISPFNILVNLQERSVKIIDFGISSHFDIKHHYLGNPEHL
                     EGTLAYNSPEQTGRMNRVVDYRTDLYSLGITFYEALAGRLPFVSSDAMELVHAHIAHT
                     PPPVHQFNEKVPAVVSRIIDRLLAKNAEDRYQSAHGLKHDLEIVLGHYEKKGACPDFD
                     LGSRDFSGRFLIPQKLYGRENEIRQLLDAYHRCAAGSKELMLVSGYSGTGKSALVREV
                     HKPITQDRGYFIEGKFDQFQRAVPYFAILQAFSELMGLLLTEKETNLLKIKTAIQEAL
                     GAEAKVLTDVLPQLEHIIGPQPEVAEVGGMEAQNRFNYLFRKLVNVLATPDHPLVLFI
                     DDLQWADSSSLSLLQVLMTDRDSQHMLCICAYRDNEVSPSHPFMITVGDIQKEGANVN
                     NISIGNLTMEDVHQLIAESVAQEKKETMALTNLVYQKTSGNAFFVNQFLKSLYQERLL
                     WFDFDNLCWQWDVDKITEKNITDNVVELMAGKVLRLPEATQECLKSGACIGSSFDPSI
                     LGIIENKEADQLKADLHSALLEGLIVPAGKSYRFSHDRIQQAVYSLIPDADKNRVHLS
                     IGKLLLEKIPPEKKEERLFDIVNQWNWGKNLVTDTGERELLAQLNLDAGQKAKQSSAF
                     KAALEYYQSGISLLKADAWQSQYTLCRDLHTEATEAAYLNGDFSVMETHYQQVLANVR
                     DLLEKVKPYEIRILAYKAENKLLDAIKTGLELL"
     gene            2812..>3228
                     /locus_tag="VLL95_03860"
     CDS             2812..>3228
                     /locus_tag="VLL95_03860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38023.1"
                     /translation="MNKRDFIKSFGLLGFAGSQSLFDLNQWIKVHDHLDAGELAADED
                     FWQGIRDGYRLKPDYINLENGYYSFLPQTTLEKYIEHIREVNYQGSYYMRTVQWDNKK
                     KMAAKLAVVAGCSPEELIITRNTTESLDMVIGGLDWQ"
BASE COUNT          842 a          774 c          744 g          868 t
ORIGIN      
        1 agcaattcca ggccggtctt gatggcgtcg agcaatttat tctctgcctt gtaagcaagt
       61 atcctgatct catagggttt cactttttca agcaggtcac gcacattagc caacacttgc
      121 tggtaatgcg tttccattac cgagaaatcg ccattgaggt aggcagcttc ggtagcttca
      181 gtatgcaaat ccctgcacaa ggtgtattgc gactgccagg catcggcctt cagcaaactg
      241 atccccgact gataatattc aagcgctgct ttgaaggcag agctctgttt ggctttttgg
      301 cccgcatcca ggttcaactg tgccagtaat tcacgttcac cagtatctgt caccaggttc
      361 ttaccccagt tccattggtt cacgatgtcg aaaagccgtt cctctttttt ctcaggagga
      421 attttttcga gcaacaattt tccgatgctg aggtgtaccc tgtttttatc tgcatcaggt
      481 atcagcgaat aaaccgcctg ttgaatgcgg tcatgtgaaa agcgataact ttttcctgcc
      541 ggcactatca ggccttctag caatgcgctg tgcagatcag cctttaattg atcggcctct
      601 ttgttttcga tgatacccag gatggaagga tcaaaactgc ttccgataca agccccactt
      661 ttcaggcatt cctgtgtggc ttcgggcaaa cgcaacactt tgccggccat cagttccacc
      721 acattgtctg tgatgttctt ttcagtgatc ttatctacat cccactgcca gcaaaggtta
      781 tcaaaatcga accacaacaa ccgctcctgg tacaatgatt tcaaaaactg gttgacgaag
      841 aaagcgttgc cacttgtttt ttggtacacc aggttggtaa gtgccatagt ctccttcttc
      901 tcctgcgcta cagactcagc gatcagttga tgcacatcct ccatggtaag attgccaatg
      961 gaaatattgt tcacgttggc accctccttt tgaatatcac ccaccgtgat cataaatggg
     1021 tgcgatgggc ttacctcatt gtcgcggtag gcacatatgc agagcatatg ctggctgtca
     1081 cgatcagtca tcagtacctg tagcaaactc aaggaagaag aatcggccca ctgcaggtcg
     1141 tcaataaaca ataccagcgg atgatctggg gtggccagta cattgaccag tttccggaaa
     1201 agataattga agcgattctg cgcttccata ccaccaacct ctgctacctc gggttggggg
     1261 ccaataatgt gctccaattg cggcaataca tccgtcagca ccttcgcctc tgcgcccagt
     1321 gcctcctgga tagccgtttt gattttcagc aaattggttt ccttttcggt aagcagcaag
     1381 cccatgagtt cgctgaatgc ctgcagaatg gcaaagtagg gaactgcccg ctggaactga
     1441 tcaaacttgc cttcgataaa atagccacgg tcttgtgtaa tgggcttatg tacttcgcgt
     1501 accagtgccg attttccggt gccggaatac cccgacacca gcattaactc tttggagcca
     1561 gctgcgcaac gatgatacgc atcaagcaac tgcctgatct cattttccct gccatatagc
     1621 ttctgaggaa taaggaacct accggaaaaa tcacgggatc ccaaatcaaa atcaggacag
     1681 gcgcctttct tttcgtaatg acccaaaaca atttcgaggt catgcttcaa accgtgggcc
     1741 gactggtagc gatcttcggc attctttgcc agcaatcggt cgataatgcg gctcaccact
     1801 gcaggcacct tttcattgaa ctggtgaacc ggaggtggcg tatgcgcaat gtgagcatgc
     1861 accagttcca tggcatcgga ggatacaaag ggcaggcggc cggccagtgc ttcataaaat
     1921 gtgatgccca gcgaatagag atcggtgcgg taatccacta ccctgttcat gcggcccgtt
     1981 tgctctggtg aattgtaagc caacgtgcct tccaggtgtt caggattgcc gaggtaatga
     2041 tgcttgatat cgaaatgact ggatataccg aagtcaatga tctttaccga acgctcctgg
     2101 aggttgacca ggatattaaa agggctgata tccttgtgaa tgatgctgtg ctggtgtatt
     2161 tcggagatgg cctgggcaga ggcgatggct atatgcaaaa agtcgatgat atcttctctt
     2221 tgtttttgaa atgcctcttt gaaagtgacc gccttgaacc attcgagata caatgcgtgc
     2281 cggttttttt ccttggtctt tttgagcacg ttgcgaatac ccttcaggct caatcctgaa
     2341 atgacatcaa attcattgta aaattgagcg atatcgctgg gcgtagggaa ttcatagttg
     2401 aggatcttca atgctacagg ctgattccac tcattgttgt caaccaggta gatcttggac
     2461 ttcttgcttt catagatcaa ttgctcggcc atgtgagata cagttagaag tggtttgaat
     2521 actttggctt gcactgaccg ataccacctc tcatgcacag aagtgctcac tatacaccta
     2581 caagcatatt ttaatcaccg ggtaattacc agcggttttc atgcgggctt gaagaaaaac
     2641 gctaatggtc agacgcaagg caattaaaga tatacgggaa atattagaaa atcaactatt
     2701 tgataatgaa caaattagtt gcgcatcttt tccacaataa aatactgaat tttcatacct
     2761 cacccaccag aacttaaaaa tgttacatta gtgctgcatg atattcgaaa tatgaataaa
     2821 agagatttca tcaaaagttt tggattgctt ggctttgccg gaagccaatc gcttttcgac
     2881 ctcaaccaat ggataaaggt gcatgatcac ctggatgccg gagaactggc agccgatgaa
     2941 gatttctggc agggcatcag ggatgggtat cgattgaaac ccgattacat aaacctggaa
     3001 aacggttact acagttttct gccacagact acactggaaa agtacattga gcatatcagg
     3061 gaagtcaact accagggatc ctattatatg cgcaccgtgc agtgggacaa caagaaaaag
     3121 atggctgcca aactggctgt ggtggctggc tgcagcccgg aagaactcat cattacccgc
     3181 aatacaacgg aaagcctcga catggtgatc ggcggtctcg actggcag
//
LOCUS       DATIQF010000242         8685 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_231663,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000242 DATIQF010000000
VERSION     DATIQF010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8685
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231663"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..406
                     /locus_tag="VLL95_03865"
     CDS             <1..406
                     /locus_tag="VLL95_03865"
                     /inference="COORDINATES: protein motif:HMM:NF012928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HSR38024.1"
                     /translation="TFGQMNVAHKLFARFCGWPGFMLREKWEVAVCQQGPWLESFSQL
                     LNKQLVPVADAPGLVAPRILAMIFNEACYGLADGICSASDMDTAMKLGTNYPKGPVAW
                     MEEIGKEKIAKLLSAMAKTDNRYAPHPLLTES"
     gene            411..1094
                     /gene="tsaB"
                     /locus_tag="VLL95_03870"
     CDS             411..1094
                     /gene="tsaB"
                     /locus_tag="VLL95_03870"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR03725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HSR38025.1"
                     /translation="MSLILNIDTSGETGMVALSRQGIIVQYEQNEKQQEHASFLQPAI
                     AAIMQRENATFSDLAAVAVGNGPGSYTGLRVGLASAKGICFAAQLPLITISSLEILAA
                     AMKQAIPVTATDYLLCPMIDARRMEVFMALYNADLQCLQEPSAVVLTPELFYNAPQVI
                     YVGGNGASKFLSITPQPEKHIGIDAITYYKQSLAVLAWEHFQRARFADLAYSEPFYSK
                     AFYSPPRQH"
     gene            1333..1680
                     /locus_tag="VLL95_03875"
     CDS             1333..1680
                     /locus_tag="VLL95_03875"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HSR38026.1"
                     /translation="MASGSQHYLTLYAGSKKEIQIELLTLKKADLIIRALNHKLRLQI
                     IRLLHDKDELTVTEIYVKLRLEQSVASQHLALLRRAGIVTTRREGKFIFYAVNASRIE
                     EIFKLSKLLVGTK"
     gene            1767..3191
                     /locus_tag="VLL95_03880"
     CDS             1767..3191
                     /locus_tag="VLL95_03880"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSR38027.1"
                     /translation="MRKFQRMFIQQLYTNCLSEAAYYIESNGEAAIIDPLRDIDDYLQ
                     LAKDRNATIKYIFETHFHADFVSGHLDLQRATGAAIVYGPGTKTHYTVKLAKDGEVFP
                     LGTASIAAIHTPGHTLESTCWLLKDEQGKEHAVFTGDTLFVGDVGRPDLSIGDLTSEE
                     LATLLYDSLHNKLANLPDEVLVYPAHGPGSACGKNLGPDTHSTIGKEKQTNYAFAATS
                     KEEFVKAVTTGLQQAPSYFSINAAINQKGYQPYEEVLAKGTKALSVQDFKKIAAHEDV
                     IIIDSRPATLFPQGFVPGAVSIGLEGRFAEWAGGLIPYTSRLLVVAEQGKEQETVTRL
                     ARVGFENFEGYLDGGFDAWKDAGEIIDMIIEVEADELAMDLPFDDNLLVLDVRNETEY
                     GSGHVVGAMHLPLAEMNDTMRIATIPEEANVYVHCMSGYRSVIAASLMKRQGLHNVRN
                     VVGGWKAIKEEEKIPVEKQKEVLN"
     gene            complement(3248..4162)
                     /locus_tag="VLL95_03885"
     CDS             complement(3248..4162)
                     /locus_tag="VLL95_03885"
                     /inference="COORDINATES: protein motif:HMM:NF015251.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSR38028.1"
                     /translation="MYYIVFGLLYLLSLLPYWVLYGIADLLAFLLFAVFRYRRRIVYE
                     NIRNSFPEMNEKQVNKLCHAFYRNFMANWFETIKLISISPERLMQRVSGNFEIFQHPF
                     EQGRKICLVQGHIFNWEMLGLAFSLKSPSPSIFVYMPLSNKNMDRFFQRLRSRFGAHL
                     MAATSFNKEIISWRRKQYAIGLLADQSPGNPYDAHWLQFLGQPTAFVTGPERNTIAFD
                     QVPFFVNISRSRLGRYHFHFEPLFPDGDVPREKGAITQAFAEKLELNVRQHPELYLWS
                     HRRWKHQWSPAYNGLWVDKLHELPVEKK"
     gene            complement(4232..5149)
                     /locus_tag="VLL95_03890"
     CDS             complement(4232..5149)
                     /locus_tag="VLL95_03890"
                     /inference="COORDINATES: protein motif:HMM:NF015251.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38029.1"
                     /translation="MYYIVYGLFYGLSLLPFWMLYALGDLIRWVLFELIGYRNDVVMN
                     NLRQSFPEKSEGELRKIAHQFKENFTDTWIETIKFFSISPGRLKKMVEVSDKDLIDFH
                     ALHSQGKSCQLMSGHFMNWELLPNALPLVQPLTLVGIYMPISSKVMNQVFLKFRSRRG
                     TKLVSAANVKQELQQFSGMPIMFAMGADQNPSVPQKACWLKFLNQPTAFPKGPSKYAC
                     ANNMPVYFAWLEKVKRGRYRLHFELLAEAPALLGEPALTLMYARKVEAVIRSHPDNYL
                     WSHRRWKHKWKEEFRANWIDNPEQEQSNS"
     gene            complement(5218..6837)
                     /gene="nadB"
                     /locus_tag="VLL95_03895"
     CDS             complement(5218..6837)
                     /gene="nadB"
                     /locus_tag="VLL95_03895"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: protein motif:HMM:NF006567.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008734 - L-aspartate oxidase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HSR38030.1"
                     /translation="MRTDFLVIGSGIAGLTYAAKVAEAMPEKQVLVLTKTYSDETNTK
                     YAQGGVAGVWDELNDSYEKHIEDTLVAGDGLCNRHTVEMVVKEGPDRIREMIGWGARF
                     DKDNAGEYALGREGGHSESRILHHKDVTGKEMERTLLEKVHSLPNIKILNHFFVLDLI
                     TQHHLGYLVTKSTPDIECYGVYVLNLETHEIQEIESSITLLATGGNGALYRSTTNPSI
                     ATGDGVAMVYRAKGRIENMEFIQFHPTALYEPGLRGQSFLITEAVRGDGGILRNHKGE
                     AFMERYDDRRDLAPRDIVARAIDHEMKINGTEHVYLDCRHISREDFIHHFPNIYEKCI
                     SIGIDVTSQMIPVAPAAHYSCGGVKTDSNGCTSIRNLYAAGECASTGLHGANRLASNS
                     LLEAMVFAHKSAMHSIQRFGKGDIFKTYTEPGKGIPAWDERGTTNPREMILITQSLKE
                     LQLLMSDYVGIVRNNVRLQRAMRRLDLLHEEIEELYRTTVVSPQLCELRNMITTGYLI
                     VKCAQFRHESRGLHYNTDYPSKHSIIQNIVM"
     gene            7449..7742
                     /locus_tag="VLL95_03900"
     CDS             7449..7742
                     /locus_tag="VLL95_03900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38031.1"
                     /translation="MSFILLIVFSATNIPVQATGKLLASNQLQEEVVEDACAAGESSK
                     CEYQSAGNPFEIKQHPSLAACPSLYWANVYFGERIPPNHTHEKLVPPPNRGVQ"
     gene            7814..>8685
                     /locus_tag="VLL95_03905"
     CDS             7814..>8685
                     /locus_tag="VLL95_03905"
                     /inference="COORDINATES: protein motif:HMM:NF013109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015116 - sulfate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HSR38032.1"
                     /translation="MKAIFRNAGADFPAAIVVFLVALPLCLGVAVASDAAPITGIIAG
                     VVGGVVIGFLSGSPLSVSGPAAGLTAIVASALAKLGSYETFLLSVVLAGALQFGLGML
                     KAGMIGDFIPNAVIKGMLAAIGLILILKQIPHFVGYDANPEGDESFLQADQENTFSEL
                     FNAMQYLSVGATTIGIVSVAILLFFDSKIIKHNPVLRFVPGPLVVVVAGILINEWFKS
                     AQPTLALMQDHLVNLNIFDSTSDFFGALPSPSFSSIAKPQVWITAFTIAIVASLESLL
                     SIEAVDKLDPEKRIT"
BASE COUNT         2248 a         2164 c         2001 g         2272 t
ORIGIN      
        1 caccttcggc caaatgaatg tggcccataa actattcgcc aggttttgcg gatggcccgg
       61 atttatgctg cgtgaaaaat gggaagtggc ggtttgccaa caaggaccct ggctggagtc
      121 attctcacaa ttgctgaaca aacaactggt gccggttgcc gatgctcccg gattggtagc
      181 accacgcata cttgccatga tcttcaatga ggcttgttat gggttggccg atggcatttg
      241 ctccgcctcc gatatggata ccgccatgaa actgggcacg aactacccca aaggcccggt
      301 ggcatggatg gaagaaattg gtaaagaaaa aatagctaag ctactttcag ccatggcaaa
      361 aactgacaac cggtatgcgc cgcatcccct gttgactgaa tcctgaaaaa atgagcctga
      421 tattaaacat tgataccagt ggtgaaaccg ggatggttgc attaagcagg cagggcatca
      481 tcgtgcagta tgaacaaaat gaaaagcaac aggaacatgc ttcttttttg cagcctgcca
      541 ttgccgccat catgcagcgg gaaaatgcca cgttcagtga tttggcagca gtggctgtag
      601 gcaatggacc gggctcgtac acagggcttc gggtagggct ggccagcgcc aaaggcattt
      661 gctttgccgc gcagttgccg ctgatcacca tttcatccct tgaaatactg gcagcagcca
      721 tgaagcaggc aatccctgtc actgcaaccg attatttgct atgtcccatg attgatgccc
      781 ggcgcatgga agtgttcatg gccttgtaca atgctgattt gcagtgcctg caagagcctt
      841 ccgcagtagt gcttacgccg gagttgtttt acaacgcacc acaggttatt tatgtgggtg
      901 gaaatggcgc atccaagttt ttaagcatca ccccgcaacc ggaaaagcat attggcatag
      961 atgccattac ttattataag caaagcctgg ctgttttggc atgggagcat ttccagcggg
     1021 cacgttttgc tgacctggct tacagcgaac ccttctacag caaagcgttt tattccccgc
     1081 cacgacaaca ttgatggctg attgtatact ggtcgggtgt agtttaagtt cgcatgtcac
     1141 ccgcaaatgc aatagtcaat ttgattattt attctcatca tacgtgacat tatcatgatt
     1201 tctcatattt tatgattgta ttttcagctt ttcttaataa atacttttga tcgattcgtt
     1261 actttgcttt gctttctgaa agtgactctt gatgaaagca ataattgtga atgaccttaa
     1321 ctacaagtac ccatggcttc aggttcccaa cactacctta cactttacgc tggcagcaaa
     1381 aaagaaattc agattgaatt actgaccctg aaaaaagctg atctcatcat cagggcactc
     1441 aaccacaaac tcaggctgca gatcatccga ttgctgcacg acaaggatga actgaccgta
     1501 actgagattt atgtgaaact ccggctggag caatctgttg cctcccaaca cctggcactt
     1561 cttcgccgtg ctggtatcgt aaccacccgt cgtgaaggaa aattcatttt ttacgcggtc
     1621 aatgcctcca ggatcgagga gatatttaaa ctctcgaagt tgctggtggg caccaaatag
     1681 cacttatttc ctgagaccat ttaatagcat ggcccaacag ccgtgctatt ggcattagga
     1741 tttagtaaac agaataaggt attcctttgc gcaaatttca gcgcatgttt attcagcaac
     1801 tctataccaa ttgcctgagc gaggccgctt attacattga aagcaatggc gaagcggcca
     1861 ttattgatcc cctgcgggat atagatgact acctgcaact ggccaaagac cgcaatgcca
     1921 ccatcaagta tatttttgaa acgcatttcc atgccgactt tgttagcggg catctcgatc
     1981 tgcagcgtgc taccggcgca gccattgttt atggtcctgg cacgaagacg cattacactg
     2041 tgaaactggc caaagatggt gaggtgtttc cgttaggtac tgcttctatc gctgccatac
     2101 atacaccggg acacaccctc gaaagcactt gctggctgtt aaaagacgaa caaggaaaag
     2161 agcatgctgt gtttacagga gataccttat ttgtaggtga tgtaggcagg cccgacctga
     2221 gcatcggcga tttgaccagc gaagaactgg ccactttact ttatgattcg ctgcacaaca
     2281 agctggcaaa tcttcccgat gaggtattgg tataccctgc ccacggtccc ggaagcgcct
     2341 gcggcaaaaa tcttggcccc gacactcaca gcacgattgg aaaagaaaag caaacgaatt
     2401 atgcctttgc agccaccagc aaggaagagt ttgtaaaagc ggttactacc gggctgcagc
     2461 aggcaccttc ctatttttca atcaacgcgg ccatcaacca aaaaggctac caaccatatg
     2521 aggaagtttt ggcaaaaggg accaaagcgc tttccgtgca ggatttcaaa aaaatagcag
     2581 cgcatgaaga tgtgatcatt attgacagcc gccccgccac ccttttcccg caaggctttg
     2641 taccgggggc tgtgagcata ggcctcgaag gtcgctttgc agaatgggcg ggaggcctta
     2701 ttccttacac ttcccgcctg ctggtggtag ccgaacaagg caaggaacaa gaaaccgtta
     2761 cccgcctggc cagggttggg ttcgaaaatt ttgaaggata cctcgacggt ggctttgatg
     2821 catggaaaga cgccggtgaa atcattgata tgatcattga ggtggaggct gatgaactgg
     2881 ccatggatct gccttttgac gataacctgt tggtgctgga tgtgcgcaac gaaacagagt
     2941 atggcagtgg tcatgtagtg ggcgccatgc atttgccgct ggcagaaatg aacgatacga
     3001 tgcgcatcgc caccattcct gaagaagcca atgtgtacgt gcattgcatg tctggctatc
     3061 gcagtgtgat tgccgcttcg ctcatgaaaa gacaaggctt gcacaatgtg cgcaatgttg
     3121 tgggtggatg gaaagccatc aaggaggaag aaaagatccc ggtagaaaaa cagaaggaag
     3181 tgctcaacta ataataaagg cgaacacatc atcataaagc atgctccaat cgcaaaaagg
     3241 gcatgcttta ttttttttca accggtagtt catgcaactt gtcaacccat agtccattgt
     3301 acgcggggct ccactggtgc ttccatctcc tgtgactcca caaatacagc tcgggatgct
     3361 gccgcacatt aagctccaac ttttcggcaa aagcctgtgt tattgcgccc ttttccctgg
     3421 gtacatcccc atcgggaaac aatggctcaa aatgaaaatg ataacgcccc aatctggatc
     3481 gactgatgtt cacgaaaaag ggcacctggt caaaggcaat ggtatttcgt tccggaccgg
     3541 tcacaaaggc tgtcggttga ccaaggaatt gcagccaatg cgcatcatat ggattgccgg
     3601 gactttgatc agccaacaat ccaatggcat attgttttct gcgccacgag ataatttcct
     3661 tgttgaaact tgttgctgcc attaaatgcg caccaaaacg actgcgcaac ctttgaaaga
     3721 aacgatccat gtttttattg ctcaaaggca tgtacacaaa gatcgatggg ctgggcgatt
     3781 tcaaactgaa agcaagtccc agcatttccc aattgaaaat atgcccctgc accaaacaga
     3841 ttttacggcc ctgttcaaag gggtgctgaa aaatttcaaa attgccggac actctttgca
     3901 tcagacgctc cggcgatatc gaaatcagtt tgatggtctc aaaccagttg gccatgaaat
     3961 tgcgataaaa tgcatggcac agtttgttga cctgtttctc attcatttca ggaaaactat
     4021 tcctgatatt ctcatacaca attctcctgc gatacctgaa aaccgcgaaa agcaaaaatg
     4081 ccagcagatc agctatgccg taaagcaccc aatatggcag gagcgaaagg agatagagca
     4141 ggccaaagac gatataatac ataggcgtgt agctgatccg gcactaatca atgcaatgtg
     4201 caggtttcaa aaacagtgaa gacaaataca atcatgagtt ggattgttct tgttccgggt
     4261 tgtcaatcca gttggccctg aattcttctt tccatttgtg cttccacctc cggtggctcc
     4321 acaagtagtt gtcgggatgg ctcctgatca ctgcttctac tttgcgggca tacatcaggg
     4381 tgagggcagg ctcacccaac aacgcaggag cctctgccag caactcgaaa tgcaagcggt
     4441 acctgcctcg tttcactttt tcgagccagg caaagtacac aggcatgttg ttggcacagg
     4501 catatttgga cggccctttg ggaaaagctg tgggttggtt caggaatttc agccagcatg
     4561 ctttttgcgg aacagacggg ttctgatcgg ctcccatggc aaacatgatg ggcatgccac
     4621 tgaattgttg cagttcctgc tttacattgg ctgccgatac aagctttgtg ccccttcgcg
     4681 accggaactt cagaaacacc tggttcatta ccttgcttga aatgggcata taaataccca
     4741 ccaacgttaa tggttgtacc aatggaaggg cattcggcaa tagttcccag ttcataaaat
     4801 gtccggacat gagttggcaa gacttgccct gcgaatgcaa cgcatgaaaa tcaataaggt
     4861 ctttatcgga cacctcaacc atttttttca aacggccggg agaaatgctg aagaacttga
     4921 tggtttcaat ccaggtgtca gtaaaattct ccttgaattg gtgagcaatc tttcgcaatt
     4981 caccttcgga cttttccgga aatgattgcc tgagattgtt catcaccaca tcatttcgat
     5041 aacctatgag ttcaaacaaa acccaacgga tcaaatcgcc cagtgcataa agcatccaga
     5101 atggcaggag cgacaaacca tagaacaaac catatacgat gtaatacaaa gcgaagagat
     5161 ttcctggtta aataattttt caatgagtca gcaaacagcc ccggtttccg accctgatca
     5221 cataacaata ttttgaatga ttgaatgttt ggaaggatag tctgtgttgt aatgcaagcc
     5281 gcggctttcg tgacggaact gcgcacactt tacaattaaa taccctgtag tgatcatgtt
     5341 ccgcagttcg cacagttgcg gcgacaccac ggttgtccga tagagttctt caatttcttc
     5401 atgcagcaaa tcaagccttc gcatggcacg ctgcaagcgt acattgttgc gtactatgcc
     5461 cacgtaatcg ctcatcagca actgaagttc tttcaggctt tgtgtaatca agatcatttc
     5521 gcggggattg gtcgttcccc gctcatccca ggcaggtatg cccttacccg gttctgtgta
     5581 tgttttgaaa atatcccctt ttccaaaacg ctgaatgctg tgcatcgcac tcttgtgggc
     5641 aaaaaccatg gcctccagca gtgaattgct ggcaaggcgg ttggctccat gcaaacctgt
     5701 actggcacat tcaccggcgg catataaatt ccgaatggag gtacacccat tgctgtccgt
     5761 tttcacgcca ccgcaactat aatgcgcagc aggagcaacc ggaatcattt ggctggtcac
     5821 atcaatacca atgctgatgc atttttcata gatgttcggg aaatggtgga tgaaatcttc
     5881 cctggaaata tgccggcaat caaggtaaac gtgttcagta ccgttgatct tcatttcatg
     5941 atctatagca cgtgccacaa tgtcgcgggg cgcaaggtcc ctgcgatcat catagcgctc
     6001 cataaatgct tcgcccttgt ggtttcggag tatgccgcca tcaccccgca ctgcttcagt
     6061 aatcagaaat gattgtcccc ggaggccggg ctcatatagt gcagtgggat ggaattgtat
     6121 gaattccatg ttttcgatcc ttccctttgc ccggtacacc attgccacgc catcacctgt
     6181 agcgatggat gggttggtag tggagcgata gagtgccccg ttacctccgg ttgccaacaa
     6241 ggtaatgctg ctttcaattt cctgtatttc gtgcgtttcg aggttgagca catacactcc
     6301 gtagcactca atatcagggg tactttttgt aaccaggtag ccaagatgat gttgggtgat
     6361 caggtcaagc acgaaaaagt gattcaggat cttgatgtta ggcaatgaat gaaccttttc
     6421 cagcaaagtc cgctccattt ccttgccggt cacatcttta tgatgcagaa tcctcgactc
     6481 actgtgcccc ccttcccgtc cgagggcata ttctcccgca ttgtccttat cgaaccgggc
     6541 cccccatcca atcatctcac gaatgcgatc aggaccctct ttcaccacca tttccacggt
     6601 atggcggtta cacaacccat cgccggccac caacgtgtct tcaatatgct tttcgtaact
     6661 gtcattcaac tcatcccaaa cgccggctac gcctccttgc gcatacttgg tattggtttc
     6721 gtctgaataa gtttttgtaa gcaccaatac ttgtttttcg ggcatggcct cagccacttt
     6781 ggcggcatag gtcaacccgg caattccaga cccaattact aaaaaatcag ttcgcatatc
     6841 ggcacttttg agggaaacgg cttagcgcct ggctgtggca gccacactat tcccctggta
     6901 aatacagccc gctaaggtac agggcctcat gagatgaatc acagtaatcc aaatgccagg
     6961 gtccttttaa tagctatcgc tgcacctatc attttatgca taaggcattt ttctggaaga
     7021 aacaaccgtg aaaacacctt tttttttaag tgttcccctc gttgcttatg cctttgccaa
     7081 gtcgaacctt tgaatccctt acccacaccg ggaattccac ccctattgaa ttctaaacaa
     7141 tcggtgcacc tgaaattaca ataggagctg atgccgtaac atctctgcct catttcagac
     7201 tgccagcctc catattcacc cccctaccct taaacaaagg aggttgaaag aaatttcaca
     7261 ccaagccaca cactcaaagc caacgatttg cacaccacca atctgccaac gtgatcaaac
     7321 acgtctggct gttttctcat cacgcttccg gctgggtttt ctaacccggc ctttttattc
     7381 tccggatatt cagactatgt tccctgataa ataactgccg gttatatttg ttgctcatgc
     7441 gacaatttgt gtcattcata ttgttgatcg ttttcagcgc caccaatatc ccggtgcagg
     7501 ctaccggcaa actgctggca tcaaaccagt tgcaggagga ggtggtggag gatgcctgcg
     7561 ctgcagggga aagtagcaaa tgcgaatacc aatccgctgg caaccccttt gaaattaagc
     7621 aacaccccag cctggctgcc tgcccctcat tgtattgggc aaacgtgtat tttggagaac
     7681 gtattcctcc caatcatacc catgaaaaat tggttccacc tccaaaccgg ggagtacagt
     7741 gataccctaa ccccagcccg cagtttggct ggctttttgg actcattttt tctactactt
     7801 ctcaatcgta ttcatgaaag cgatttttcg aaatgcagga gcagactttc ctgcagcaat
     7861 tgtggtgttt ttggtggcac ttcctttgtg cctgggtgtg gcggttgcat ccgatgccgc
     7921 tcccatcaca ggcatcattg ccggcgtagt gggcggagtg gtgattggtt ttttaagcgg
     7981 atcgccgcta agtgtgagcg gaccagctgc cggcctcact gccattgtgg cctcggcttt
     8041 ggcaaaactt ggctcttatg aaaccttttt gctgagtgta gtgttggccg gtgccttgca
     8101 atttgggctg ggcatgttga aagccggcat gatcggcgat ttcattccaa acgctgtaat
     8161 caagggaatg ctcgccgcca ttggcttgat cctgatcctg aaacagatac cgcactttgt
     8221 aggctacgat gccaatcctg aaggggatga atcatttctg caggctgacc aggaaaatac
     8281 cttttccgaa ctgttcaatg cgatgcaata cctctcggtg ggagccacca ccattgggat
     8341 tgtctcagtt gccatcctct tgtttttcga ctcaaagatc atcaaacata acccggtact
     8401 tcgttttgta cccggacctc tggtggtagt agtagctggc attctgataa acgaatggtt
     8461 caaatctgca cagcccacct tggcgctcat gcaggatcac ctggtgaacc tgaatatatt
     8521 cgattccaca agcgattttt ttggagcgct gccttcccct tcgttttcca gtattgcgaa
     8581 accccaggta tggatcactg cctttaccat tgccattgtt gccagcctcg aatcgctgtt
     8641 aagtatagaa gcggttgaca aattagatcc ggaaaaaagg ataac
//
LOCUS       DATIQF010000243         1545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_33946, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000243 DATIQF010000000
VERSION     DATIQF010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33946"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..922)
                     /locus_tag="VLL95_03910"
     CDS             complement(<1..922)
                     /locus_tag="VLL95_03910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38033.1"
                     /translation="MESTPAQPWPVWRRIGFRFAFVYFLLTFSPLAFLEFIPGAYGLI
                     EVLYAPIVWLTEWVNKQWLHIADPLVMPNGSGDTSYGWAVMYTYLMLSLVVSIGWSLF
                     DRKRQSYNQLCYWLCLLLRYTLIMACFAYGIQKVFALQMPFPNMSQLATPLGDFLPMR
                     LSWMFIGYSTPYQVFSGVAEVLAALLLLWRRTATLGALVAFGVMFNVAMLNLSYDIPV
                     KIYSIHLCIISAYLLWQDRERLLNFFLLNRPTIPSTLFAYAFSKKWMRISRVVAKVIF
                     IALGLGMVVVSAIQYKQQVAAENNKVLPPIK"
     gene            1136..>1545
                     /locus_tag="VLL95_03915"
     CDS             1136..>1545
                     /locus_tag="VLL95_03915"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin"
                     /protein_id="HSR38034.1"
                     /translation="MLSEKMQAALNKQVAVEAQSSQVYLAMASWAEGQPGLDGVTQFF
                     YRHSDEERMHMLKLIGYINERGGCALIPALEQPQPTYPSLKLAFKELLAHEVYVSNSI
                     NELVHIALEERDYATHNFLQWYVAEQIEEERLAR"
BASE COUNT          452 a          374 c          398 g          321 t
ORIGIN      
        1 gctttatggg gggcaatacc ttattgtttt ctgctgctac ttgttgcttg tattgaatag
       61 ctgaaaccac caccatgccc aggcccagtg caatgaagat tactttggca acaacccggc
      121 tgatgcgcat ccatttcttg ctgaatgcat acgcaaacaa agtggaagga atggtgggcc
      181 ggttgagcaa aaagaaattc agcaatcgct ccctgtcctg ccacaaaagg taggcactga
      241 tgatgcacag gtgaatggaa tagattttaa cgggtatgtc gtagctgagg ttgagcatgg
      301 ccacgttgaa cattacccca aaagctacca aggcgcccag cgttgcggtg cggcgccaaa
      361 gcagcaggag tgccgccaaa acctctgcta caccggaaaa aacctggtag ggtgtactgt
      421 agccaataaa catccacgac aaacgcatgg gtagaaaatc gcccagcggc gtagccagct
      481 ggctcatatt cgggaatggc atttgcaggg caaatacttt ttgaatgcca taagcaaaac
      541 aagccatgat aagcgtatag cgcagcagca ggcacagcca ataacacagt tgattgtaag
      601 attgccgctt gcgatcaaaa aggctccagc caatgctgac aaccaatgac agcattaagt
      661 aggtgtacat caccgcccat ccgtaggagg tatcgccact gccattgggc attaccagcg
      721 gatcggctat gtgcagccat tgcttgttga cccattcggt aagccacaca atcggtgcgt
      781 acagcacttc tattaatcca tatgcaccgg gtatgaattc aagaaaggca agcggactga
      841 aagtgagcaa gaaataaacg aatgcaaaac gaaagccaat gcggcgccac acgggccagg
      901 gctgggcggg tgttgattcc ataacaagaa aaaaggcgat taactgacaa tatagcaaaa
      961 cccaatttat cggtgaaaaa tggccgcacc gaagctggtc tttttgtgga agcaatttac
     1021 tggccgaaca taccgccatc gttcttacat tgcaacggtt gtttgtccgg ggttgaaaca
     1081 ggaccaccgg cgataccgga aaatcttttt gtttggatta gataaactgt aagccatgtt
     1141 atcagaaaaa atgcaggcag ccctgaacaa gcaggtggct gtagaagcgc aaagttcaca
     1201 agtatacctg gccatggcca gctgggccga aggccagccc gggctcgatg gagtgaccca
     1261 gtttttttat cgccatagcg atgaggaacg catgcacatg ctcaagctca tcggctatat
     1321 caatgaaagg ggaggatgcg ccctgatacc ggcgctggag cagccgcagc ctacctatcc
     1381 atcgctcaag cttgccttta aagaactgct ggcacacgaa gtgtatgtga gcaacagcat
     1441 caacgaactg gtgcacatag cccttgaaga aagggactat gccacccaca acttcctgca
     1501 gtggtacgtg gcagagcaga tagaagaaga aaggctggcc cgcat
//
LOCUS       DATIQF010000244         1804 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_231672,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000244 DATIQF010000000
VERSION     DATIQF010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1804
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231672"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1488
                     /locus_tag="VLL95_03920"
     CDS             <1..1488
                     /locus_tag="VLL95_03920"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HSR38035.1"
                     /translation="QQHSGQAFRVLSGEALMLAGNQAIQIIICALLWLHNPKHSIALA
                     QLRQLVALQKGLPANSLDVFASNGNNALLPKAFLDNIMQLRSLPLAELVHQIIILFEL
                     HHMQEHAAYLLAFNDKVQESTKYGETSLQEFLQYWDDEGVDASLPAKADSDALEVVTV
                     HKSKGLAYGIVLMPFLDWELVPKGGPKAPTLWVDNERTRFNEISVLPIAYKNELAKSA
                     YAAAYYEEFVLAAMDNLNILYVAFTRAKQAVFGWAPSKQTRKDSKSFPYKHVGDLMFA
                     IAKSTLPLPNDNYQDTREGLDADKKCWTFGTLAKPTEGDAEKSQATIPSFTYTQWKEK
                     LRLRYQAIAQDTDNEIVLPRKQGILLHDILSRMNAPTELDSVLQQMKREGWLDDYQAQ
                     KLQHIVASVLKIEALQPWHQQQHRRLAERSIIASDRKLKRPDLILYNEQECLVYDFKF
                     TAGDDDKQQHKQQVTEYMEMLTQMGFANVQGWVIYGLENKALRID"
     gene            1502..>1804
                     /locus_tag="VLL95_03925"
     CDS             1502..>1804
                     /locus_tag="VLL95_03925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38036.1"
                     /translation="MQPFLKTVAQRLHDRYKDKMHQLAVVFPNRRQSVYFSHYLKQVA
                     APPCFVPQLLTIEELVASSSVLPMADNLTQGFALYEAFAAVSKEYGDTNIPPFDVFF"
BASE COUNT          494 a          473 c          440 g          397 t
ORIGIN      
        1 caacagcatt ccgggcaggc gtttcgcgtt ttgtcgggtg aggcgctgat gctggctggt
       61 aaccaggcca ttcaaatcat catatgcgcc ctgctctggc tgcacaatcc gaagcacagc
      121 attgcactgg cccagttgcg gcaattggtc gccctgcaaa aaggcctgcc agccaacagc
      181 ctggatgtat ttgccagcaa tggcaacaat gccctcttgc caaaagcgtt tctcgacaac
      241 ataatgcaat tgcgcagcct gccgctggcc gaactggtcc accaaatcat cattcttttt
      301 gaactgcacc acatgcagga gcatgccgcc tacttgctgg ccttcaatga taaggtgcag
      361 gaatccacca aatacggaga gaccagcctg caggaattcc tgcagtattg ggatgacgaa
      421 ggtgttgacg cctcattacc cgcaaaagcc gacagcgatg cgttggaagt ggtgaccgtg
      481 cacaaatcaa aaggattggc ttatggcatc gtgctgatgc cttttctcga ttgggagttg
      541 gtgcccaagg gcggacccaa agcgcccacc ttgtgggtag acaatgagcg aacccgcttc
      601 aatgaaatat cagtgctgcc cattgcctac aagaatgaac tggcgaaaag tgcttacgca
      661 gccgcctatt acgaagagtt tgtgctggca gcgatggaca atcttaatat actgtatgta
      721 gcttttacga gggcaaaaca agcagtgttt gggtgggctc cttccaagca aaccaggaag
      781 gatagcaaat catttcctta caaacatgtg ggcgatctga tgtttgcgat tgccaaatca
      841 accctgcctc tccccaacga caattaccag gatacccgtg agggattgga tgccgacaaa
      901 aaatgctgga cgttcggtac gctggcaaaa cctacggaag gcgatgctga aaaaagccaa
      961 gccaccattc cctcattcac ctacacgcaa tggaaagaaa aattgcggct gcgataccag
     1021 gccattgctc aggataccga caatgaaatt gtgctgccga ggaagcaggg cattttgctg
     1081 cacgatatat taagccgcat gaatgctccc acagagctcg attcggtatt gcagcaaatg
     1141 aaacgcgaag gatggctgga tgattaccag gcccagaaac tccagcacat tgttgcctcc
     1201 gtactgaaaa tagaggcctt gcaaccctgg catcaacaac aacatcgaag gctggctgaa
     1261 cgcagcatca ttgccagtga caggaaactg aaaaggcccg acctcattct ttacaatgag
     1321 caggagtgcc tggtatatga cttcaaattc acggcaggcg acgatgacaa acaacagcac
     1381 aagcagcagg taaccgaata catggaaatg cttacccaga tgggctttgc caatgttcag
     1441 ggctgggtga tatacggact tgaaaacaaa gctttacgaa ttgattaaac ccgccgcaca
     1501 catgcaacct tttctaaaga ccgtagcaca acgcttacac gaccgataca aggacaagat
     1561 gcaccaactg gcggtggtat tccccaaccg gcgtcaatct gtatacttta gtcactattt
     1621 gaagcaggtg gccgccccgc cttgttttgt accgcaattg ctcaccattg aagaactggt
     1681 ggcttcctcc tccgtgctgc ccatggcaga caacctgacg cagggatttg ccttgtacga
     1741 agcattcgcg gctgtttcca aagaatatgg cgataccaac attccaccct tcgatgtttt
     1801 cttt
//
LOCUS       DATIQF010000245         2116 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_292466,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000245 DATIQF010000000
VERSION     DATIQF010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292466"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1480)
                     /locus_tag="VLL95_03930"
     CDS             complement(<1..1480)
                     /locus_tag="VLL95_03930"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HSR38037.1"
                     /translation="MMKAQLQQLADQLEGDLYFDDTMRILYATDASAYREMPLAVAIP
                     QSKEDIRQLIRFAAASNTSLIPRTAGTSLAGQVVGNGIVVDVSKHFTQILELNKEEHW
                     VRVQPGVIRDELNMFLKPHGLFFGPETSTANRAMIGGMVGNNSCGSNSVVYGSTRDHL
                     LEVECFLSDSSEVVFGVLSLEEFHAKCELPTLEGKVYKQVRSMLSVEANQNEIRNQFP
                     KKSIERRNTGYAIDLLVEMAPFTAGGPDFNFCSLIAGSEGTLCFITEIKLHVNDMPPK
                     EAGLLCVHFNTIDESLRANLIALKYQPSASELIDHYILECTKDNIEQRKNRFFVQGDP
                     GAILVVEYSRETREEIAAICQQVEADMRAAGLGYHFPVLYGDDCKKIWTLRKAGLGLL
                     GNLPGDEKAVPVIEDTAVDVNDLPAYIRDFNEILKKHGLYSVHYAHAGSGELHLRPII
                     NLKTEEGNRLFRVIAEEIATLVKKYNGSLSGEHGDGRLRGEFI"
     gene            complement(1580..>2116)
                     /locus_tag="VLL95_03935"
     CDS             complement(1580..>2116)
                     /locus_tag="VLL95_03935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38038.1"
                     /translation="NSSGTTTDATDANLTGTRDNTGYNFSVDYRFYLKKENKYPTPRG
                     VYLGPYYSYNRFERTADWRLDNSSGTTTDASAATKLGIHTVGLEVGYQFALGKRFTLD
                     LVMVGPGWANYKLNTALTSNLSPEQKEKLLSAVHQLLAQKFPGMDFVLSDATIDSKGN
                     LNTCSIGYRYIIHIGFRL"
BASE COUNT          440 a          562 c          563 g          551 t
ORIGIN      
        1 ggatgaattc gcctcgcagg cggccatcgc catgctcacc gcttagtgag ccgttgtatt
       61 tttttaccag cgtagctatc tcttcagcaa tcacccggaa caagcggttg ccttcctccg
      121 ttttcaaatt gatgatgggg cgcaggtgca attcgccact accggcatgt gcatagtgca
      181 cgctgtagag gccatgcttt ttcaatatct cgttgaagtc gcggatatag gccggcaaat
      241 cattcacatc caccgccgtg tcttctatca caggcacagc tttctcatcg ccgggcaggt
      301 tgcccagcaa gccgaggcct gctttgcgca gcgtccatat ttttttgcaa tcatcgccat
      361 acagcaccgg gaagtgataa cccaggccgg cggcacgcat gtcggcttcc acctgttggc
      421 atatcgccgc aatttcttcg cgggtttctc tcgagtattc caccaccagt atggcgccgg
      481 gatcgccttg tacaaagaag cggttcttgc gttgttcaat attgtccttg gtgcattcga
      541 gtatgtagtg gtcgatcagt tcgctggcgc tgggttggta tttcagtgcg atgaggttgg
      601 cccgcaggct ttcatcgatg gtattgaaat gcacacacag caaacctgct tctttgggcg
      661 gcatgtcgtt tacatgcagc ttgatctcgg taatgaaaca cagcgttcct tcgctgccgg
      721 cgatcagcga gcagaaattg aaatcgggac cgccggccgt gaaaggtgcc atttccacca
      781 gcaggtcgat ggcgtatccg gtgttgcggc gttcaatgct ttttttcggg aactggttgc
      841 ggatctcgtt ttggttggcc tccacgctca gcatgctgcg cacctgcttg tacacttttc
      901 cttcgagggt aggcagttcg catttggcat gaaactcctc gaggctgagc acgccgaaaa
      961 ccacctcgct gctatcgctt aaaaagcatt ccacttccag caggtgatcg cgggtgctgc
     1021 catacaccac gctgttgctg ccgcagctgt tgttgcccac catgccacca atcatggcgc
     1081 ggttggcggt actggtttcg gggccaaaga acaagccgtg gggtttcagg aacatattca
     1141 actcgtcgcg gataacgccg ggttgtacgc gtacccaatg ctcttctttg ttcagttcca
     1201 gtatttgcgt aaagtgtttg cttacatcta ccacaatgcc atttcccacc acctgcccgg
     1261 ccaggctggt gccggcggtg cggggaatga gggaggtgtt gctggctgca gcaaagcgaa
     1321 tgagttgccg gatgtcttct tttgattggg gaatagctac cgccagcggc atttcgcggt
     1381 acgccgaggc atccgtagca tacaggatgc gcatggtatc atcaaagtac agatcgcctt
     1441 ccagttgatc ggctaactgc tgcagttgcg ctttcatcat cttcatttac cagttgccgg
     1501 caagcagcct caaaagtatg gcaaagcacg aataggcagt cggcctttgc gagccccagc
     1561 gattgcaata gcccccatct tacaacctga aaccaatatg gatgatgtaa cggtagccaa
     1621 tactacaggt attaaggttg cctttggagt caatagtggc gtcactgagc acaaaatcca
     1681 tacccgggaa cttctgggcc agtaactgat gcactgcgct caatagtttc tccttttgct
     1741 ctgggcttaa gttgctggta agagcagtat tcaatttgta attggcccaa cccggtccca
     1801 ccattaccag gtcgagggtg aaacgcttgc ccaatgcaaa ctggtaaccc acctccaatc
     1861 ctacagtgtg gatccccagt ttggtagcag cgctggcatc ggtggtggta ccgctgctgt
     1921 tatccagccg ccagtctgct gtacgctcaa agcggttgta ggaataataa ggtccgaggt
     1981 aaacacctcg tggagttgga tatttgtttt ctttcttcag gtagaaccgg tagtccactg
     2041 aaaaattgta acccgtattg tccctggtgc cggtgaggtt ggcatcggtg gcatcggtgg
     2101 tggtaccgct gctgtt
//
LOCUS       DATIQF010000246         1852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_49351, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000246 DATIQF010000000
VERSION     DATIQF010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49351"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..986)
                     /locus_tag="VLL95_03940"
     CDS             complement(<1..986)
                     /locus_tag="VLL95_03940"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR38039.1"
                     /translation="MAAYLAGMWLSVVFVLLLLSYVLLVLWYRWAWRQLPEVTTPRFE
                     PTTSVTVLVPARNESRNIEACLQSLLAQDYPIYLLQIIVIDDASEDDTAEKVAAMAAR
                     HPHVSCLRMEPDAAVQSHKKRAIEKGIAAATGELIVCTDADCSMGPHWLSALVFAKEQ
                     RHLQFVAAPVRYHPGHSLLSVFQTLDFTTLQGITGASVSKRFHTMCNGANIAYTKAAF
                     EEVGGFAGIDQLPTGDDMLLMHKIFKRYPQGVQWLKSKEAVVSTQACSSWRDFFQQRI
                     RWASKAAFYDDKRIFYMLLLVYLFNVMFPVMAVAGFFLPGTWWLLLIGLVAKT"
     gene            complement(1029..1784)
                     /locus_tag="VLL95_03945"
     CDS             complement(1029..1784)
                     /locus_tag="VLL95_03945"
                     /inference="COORDINATES: protein motif:HMM:NF003198.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047294 - phosphoglycerol
                     geranylgeranyltransferase activity [Evidence IEA];
                     GO_process: GO:0006650 - glycerophospholipid metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="geranylgeranylglyceryl/heptaprenylglyceryl
                     phosphate synthase"
                     /protein_id="HSR38040.1"
                     /translation="MKHRLYDIFVERKANGKKSFAVLIDPDKVNEQALDELVQLATDA
                     QVDYFFLGGSLVISNHLDECVKHIKAQSDIPVILFPGSPSQVSKYADALLYLSLISGR
                     NPELLIGQHVISAPVVKQSGLEIMPTGYMVIDGGAPTTVSYISNAAPIPADKNEIAMC
                     TAMAGEMLGMKLIYMDAGSGARKPITEGMIEKVAGTIEAPLIIGGGITDPEKAYRNCK
                     AGADVIVVGNAIEKDPSLIKEIAAAIHSTKVQA"
BASE COUNT          461 a          494 c          472 g          425 t
ORIGIN      
        1 gttttagcga ccaacccaat cagcagcagc caccaggtac ccggcagaaa aaaacccgct
       61 acagccatta ctgggaacat gacgttgaac aaatacacca gcagcaacat ataaaaaatt
      121 cgcttgtcat cgtaaaaagc agctttgctg gcccagcgaa tgcgctgctg aaaaaaatcc
      181 cgccaactgc tgcaggcctg cgtggatacc acagcctcct tcgatttcag ccattgcacg
      241 ccctggggat agcgcttgaa aattttatgc attaacagca tatcatcacc agtaggcaat
      301 tggtcgatgc cggcaaaccc gcccacttct tcaaacgccg ccttggtata ggcaatattg
      361 gcgccattgc acatggtatg gaatcttttc gacacgctgg cgccggtaat tccttgcagg
      421 gtggtgaaat cgagtgtttg gaacaccgac aataaactgt ggccagggtg gtacctcacc
      481 ggggcggcta caaactgcag gtggcgctgt tctttggcaa aaacaagggc tgaaagccaa
      541 tgcggcccca tgctgcaatc ggcatcggtg caaacaatca attcaccggt ggcagcagca
      601 atcccttttt caatggccct tttcttgtgc gattgtactg cggcatcagg ctccatgcgc
      661 aggcaactga catggggatg acgggcagcc atggcggcta ccttttcggc ggtatcgtct
      721 tccgaagcat cgtcaattac aatgatctgc agcaaataga tggggtaatc ctgtgccaac
      781 aggctttgca ggcaggcttc aatgttccgg ctttcattgc gggcaggcac cagcaccgtc
      841 acgctggtgg tgggttcaaa acgaggagtg gtcacctccg gcaattgccg ccaggcccac
      901 cggtaccaga gcaccagcaa cacatagctg agcagcaata aaacgaaaac aacggaaagc
      961 cacatgcctg caagataagc ggccaaagag gataattaat gttggggaaa ggaagcgaat
     1021 ggcaaggctc aggcctgcac cttggtgctg tggatggcag cagcgatttc tttgatcagc
     1081 gaaggatctt tttcaatggc attgcccacc actatcacat cggcgcctgc tttgcaattg
     1141 cgatacgctt tctccggatc ggtaatgcca ccgccaataa tgagtggcgc ctcaatggta
     1201 ccagccacct tttcgatcat accctcagtg atgggtttac gggcaccgct gccggcatcc
     1261 atgtagatca gcttcatgcc cagcatttcg ccagccatgg ctgtgcacat ggcgatctca
     1321 tttttatctg cagggatggg ggcggcatta gaaatatagg aaaccgtggt gggagcgcct
     1381 ccgtcaatca ccatgtaacc ggtgggcatg atctccagcc cgctttgctt caccaccggc
     1441 gcactgatga cgtgctgccc gatgagcagt tccgggttgc ggccactgat caggctcagg
     1501 tacaagagcg catcggcgta cttgcttacc tggctgggac tgccggggaa aaggatcacg
     1561 ggaatatcac tttgcgcttt gatgtgcttc acacattcat ccagatgatt gctgatcacc
     1621 aggctgcctc ctaaaaagaa ataatctacc tgcgcatcgg tggccagttg caccaactca
     1681 tccaatgcct gctcgttcac cttgtcagga tcaatgagta ctgcaaagct ttttttgccg
     1741 tttgcctttc tttcaacgaa tatgtcgtac agccggtgct tcatgcattg aggtgtgcga
     1801 caaaaatgcg ataaaaattg tgacggttga aaatcaatgg caattttctt ta
//
LOCUS       DATIQF010000247         2725 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_140623,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000247 DATIQF010000000
VERSION     DATIQF010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2725
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140623"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..253)
                     /locus_tag="VLL95_03950"
     CDS             complement(<1..253)
                     /locus_tag="VLL95_03950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38041.1"
                     /translation="MRPTLTQTQDQGRTRWLTPNTNWRQLVVSFLGVLFSFFLVMGNS
                     FAQTVEALTPLGNPSANIDQAKNGPYTAPLTPMQWVNGNL"
     gene            706..1947
                     /locus_tag="VLL95_03955"
     CDS             706..1947
                     /locus_tag="VLL95_03955"
                     /inference="COORDINATES: protein motif:HMM:NF015882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HSR38042.1"
                     /translation="MRLSSIFALLYYQSTEADMNIFEESIQLHKTLRGKITVRNKMDV
                     RTTEDLAKVYSPGVAAPCEAIAADKSKVYDYTLKGNCVAIVTDGSAVLGLGNIGPEAA
                     LPVMEGKAMLFKKFADIDAFPICLATQDTEEIIRTVQLLAPTFGGVNLEDIAAPHCFE
                     IERRLQDIGIPVFHDDQDGTAIVVLAGLINAAKLVGKSMSQLKVVVNGAGAAGTAITR
                     LLRCQGFGGETLASCISVKDVIACDSQGIVSRDRTDLNEEKQQLLDYTNLNNVSGSLQ
                     DALAGADVFIGVSKGNLLTAADVQLMAKDAIIFALANPIPEIMPEEALKGGAAIVGTG
                     RSDLPNQINNVLGFPGIFRGALDARAKRISPGMKLAAAYAIADYLRNPTREEIIPATL
                     DPAVAHRVAEAVRKAALAEQS"
     gene            complement(2026..>2725)
                     /locus_tag="VLL95_03960"
     CDS             complement(2026..>2725)
                     /locus_tag="VLL95_03960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38043.1"
                     /translation="RNGLLAQTMTLYFNLQNSSVLGAVEIKAYGFITQKVDCGTKVAM
                     DMPQTFNLPTKVVDYLNAGHADYPNTVFGLYKLANAYLGGLTPGGLDPESVAGAVDKI
                     NNAFDECRIITGYVGELPTVAPITRVTADAPAANANASNAAVKGLKVSAYPNPFVDRV
                     KFVISSEVSGNAQMEILDVQGRIIARPYNGYIYAGRSQTVEVMLRNASSEQLIYRLRV
                     GTNTATGKLMRVSE"
BASE COUNT          704 a          658 c          698 g          665 t
ORIGIN      
        1 taaggtttcc gttcacccac tgcataggag ttaggggtgc ggtgtacggc ccgttcttgg
       61 cctggtcgat attggctgag gggtttccaa gaggagtaag cgcttcaaca gtctgagcaa
      121 atgaattgcc cataaccaaa aagaagctga ataaaacacc caggaaactt accactaact
      181 gacgccaatt tgtattgggc gtcagccaac gtgttcgacc ttgatcttgc gtttgtgtaa
      241 gcgttggtct cattgttttg tgatttgggt ttaaaacaga taagggttta atatataaac
      301 tctgaaacgc caccagcaca aggcaggcag cccttcaaag gagggtattc cgcagcacaa
      361 atcattccca cagcattgca gggtaagtgc aatcttggca ggatttcacg ggtagtaaat
      421 ggtccaaaaa agctggagag cccgaagcgt cagaaaagac agttagtctt aagggttttg
      481 accaaatcgg ggccagggtt ttgtttaggg gaattgaaga tataacaccg aagtttgaaa
      541 cacaaagaaa acattagaaa aattttaaag gtgaaaacat taatgttttg actttaaaat
      601 attgtgattg aaaaccaaca cgtatttgtg tttttggcca gttaggggct tttttttatt
      661 tcctgagaat tgtttttcaa tggaataggg gaaacagcct ctgccttgcg cctgtcgagt
      721 atcttcgcac tcttgtacta tcaatcaaca gaagcagaca tgaacatttt tgaagaatcg
      781 atccaactcc ataagacctt gcggggcaag atcaccgtgc gcaacaagat ggacgtacgt
      841 accaccgaag acctggccaa agtgtattca cccggggtag ccgccccctg cgaggccatt
      901 gcggccgata aaagcaaagt atatgattat acgctgaagg gaaactgcgt agccatcgtt
      961 accgatggtt ctgccgtttt gggtttgggc aacataggcc cggaagccgc cctgccggta
     1021 atggaaggca aggccatgct gttcaagaag tttgccgaca tcgatgcctt ccccatttgc
     1081 ctggccaccc aggatacgga agagatcatt cgtaccgtgc aactgctggc ccccactttt
     1141 ggcggggtga acctggaaga catagccgct ccccactgtt ttgaaattga gcgtcgcctg
     1201 caggatatcg gcatcccggt tttccatgac gaccaggacg gtactgccat tgtagtgctg
     1261 gccggattga tcaatgccgc caaactggtg ggcaagtcaa tgtcgcaact gaaagtggtg
     1321 gtgaacggcg ccggggccgc tggtactgcc atcaccaggc tccttcgttg ccagggattt
     1381 ggcggtgaaa cactggcctc ctgcatttcg gtaaaagatg tgatagcctg cgacagccaa
     1441 ggcatagtga gccgcgacag gaccgacctg aacgaggaaa aacaacaatt gctggattat
     1501 accaacctca ataatgtgag cggttctctg caggacgcat tggcaggggc ggatgttttt
     1561 attggcgtaa gcaagggcaa tttgctgaca gccgccgatg tgcagttgat ggccaaagac
     1621 gccatcattt ttgccctggc caatcccata ccggaaataa tgcctgaaga agcattgaaa
     1681 gggggtgccg ccattgtggg taccggccgc agcgacctgc ccaaccagat caataacgtg
     1741 ttgggttttc ccggcatttt caggggagcg cttgatgcca gggccaagcg gatttcaccc
     1801 ggtatgaaac tggcagcagc ctatgccatt gccgattacc tgcgcaatcc tacccgcgaa
     1861 gagatcatcc ctgccaccct cgatcctgcc gtagcgcacc gtgtggcaga ggctgtgcga
     1921 aaggcggctt tggcggagca aagctgaaac atagaaaaga ccttcataaa ataagagtgc
     1981 cccagaaggg gcactctttt gcataaccca aatccaatca tcaccttatt ctgaaaccct
     2041 catcagcttg ccagttgccg tattggtgcc aacccgtaag cgatagatca gttgttcgct
     2101 ggaagcgttc ctgagcatca cttctacagt ttggctgcgt ccggcataaa tatatccgtt
     2161 gtaaggcctt gcaataatcc ggccttgcac atccagtatt tccatttgtg cgttgcccga
     2221 aacttcggag ctgatcacaa attttaccct gtcaacaaat gggttcgggt aggcggatac
     2281 tttcaatcct ttcacagcag cattgctggc attagcattg gcagcaggtg catcggcagt
     2341 tacccttgta attggagcaa ctgttggcaa ttcgcctaca tagccagtaa taatgcggca
     2401 ttcatcgaag gcattgttga ttttgtcaac agcgccagct actgattcag gatccaatcc
     2461 accaggtgtg agaccgccga ggtaagcatt ggccagtttg tacaagccga atactgtgtt
     2521 cggatagtca gcatgacctg cattcaggta atcaaccacc ttggtaggca ggttgaatgt
     2581 ctgaggcata tccatggcca ccttggtgcc gcaatcaact ttctgggtaa tgaatccata
     2641 cgccttgatt tcaacagcac cgagtacact gctgttctgc aagttgaagt acagcgtcat
     2701 ggtttgcgcc agtaagccgt tcctg
//
LOCUS       DATIQF010000248         3574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_277309,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000248 DATIQF010000000
VERSION     DATIQF010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3574
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277309"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..894)
                     /locus_tag="VLL95_03965"
     CDS             complement(<1..894)
                     /locus_tag="VLL95_03965"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSR38044.1"
                     /translation="MYTLKNYVLGEWVAGAGNGQLLYNAVTGDPLANTSTDGLDFAAV
                     LQYARQKGNPALRKMTFQERGLMLKALALHLRNHLDKFYALSYQTGATKADSWVDIEG
                     GIGNLFSYASLRRRFPNESYHVDGESHMLGKAGTFMGQHIMVPKEGVAIHINAFNFPV
                     WGMLEKIAVNLLAGVPAVVKPATVTSYLTEAVVQEIIASNILPAGALQLLCGSAGDML
                     NHVCYQDVITFTGSASTGLKLKSNPIILSESVPFNMEADSLNCIVLGEDVTPDMPEWD
                     LFVKEIRKEMTLKAGQRCTGVR"
     gene            1025..1699
                     /locus_tag="VLL95_03970"
     CDS             1025..1699
                     /locus_tag="VLL95_03970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38045.1"
                     /translation="MGIPKTIVWIASLSFVTLLLMTVYRMLTLSLLKIDLGSFSLNEA
                     AWLGFRFDLRYVACIALVLFALSFIPSLHPFKHRKGKRLLTIIYSVFIGILLILYAGD
                     FLVQLAFEKRLSVQTIQWSQEQPEKIRSTPWVILVLFAGVGTWLSYVVARALHRLQEK
                     SKSVGTSVLRMFWQGLTLAGLTVCIYGSLDNASLRVKNTHAANDAVVGSFVINPVESL
                     LFNPGK"
     gene            complement(1767..2345)
                     /gene="msrB"
                     /locus_tag="VLL95_03975"
     CDS             complement(1767..2345)
                     /gene="msrB"
                     /locus_tag="VLL95_03975"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HSR38046.1"
                     /translation="MKAIILIGLLYLTSVGCTYSQPGSNANKSSVKMENEKKPANPVY
                     NRQDSSKVELSDAEWQKLLSPEVYYIARQKGTERPWTSKFENFKEIGTYYCAACGNPL
                     FRSDTKFESGCGWPSFYEPISKGAIIYTPDHSHGMTRTEVMCGRCKAHLGHVFDDGPP
                     PTGLRYCINGVILDFEKAKEAEKKAGYQSPKG"
     gene            2479..3063
                     /locus_tag="VLL95_03980"
     CDS             2479..3063
                     /locus_tag="VLL95_03980"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: protein motif:HMM:NF001381.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019205 - nucleobase-containing compound
                     kinase activity [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HSR38047.1"
                     /translation="MFNLVLFGPPGSGKGTQSEKLIEKYGLIHLSTGDLLRKEMKAGT
                     PLGNEAKSLIEKGQLVPDEVVVGMISSALDANPGATGFLFDGFPRTIAQAEALDNLLE
                     LKKTSIGAVLFLMVNEDELIKRLVGRAQTSGRLDDADPEIQRNRQNVYKNETLPVAGY
                     YQNQDKVSRIEGEGSIDEIFERLCGVIDAKMQAA"
     gene            3231..>3574
                     /locus_tag="VLL95_03985"
     CDS             3231..>3574
                     /locus_tag="VLL95_03985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38048.1"
                     /translation="MRKIYAAILLTLAFMASHQGNGQSLKPQFDRNEYADMLWLQFYA
                     LSDSLSAGTSFKLNSGTFTKVFSSPEVGLYNKCVIFQREDGVVVLELRGTVNKPESWL
                     ENFYAGMVPAQGS"
BASE COUNT          895 a          879 c          867 g          933 t
ORIGIN      
        1 cctcacccct gtacaacgct gcccggcttt cagtgtcatt tccttcctga tctctttgac
       61 aaaaagatcc cactcaggca tgtcaggagt cacatcttcg cccagcacaa tacagttgag
      121 cgaatccgct tccatattaa atggcaccga ttcggacaaa atgatggggt ttgatttcag
      181 ctttaaacct gtgctggctg agccagtaaa ggtgatcaca tcctggtagc aaacatggtt
      241 cagcatatcg ccggcagagc cacacaacaa ttgcagcgca ccggcaggca gaatattgct
      301 ggcaataatt tcctggacaa ccgcttccgt caggtatgag gtcaccgttg cgggtttcac
      361 cacggcgggc acaccggcca gcaggttcac agcaattttt tcgagcatac cccacaccgg
      421 gaaattgaaa gcattgatgt gaatggccac gccttctttc ggcaccatga tgtgctgccc
      481 catgaaggtg cctgccttgc ccagcatatg cgattcacca tctacatgat agctttcatt
      541 gggaaaacgc cgtctcaggc tggcatagga aaaaaggttg ccaatgcccc cttcgatatc
      601 tacccagcta tcggccttgg tggccccggt ctggtaactg agcgcataaa atttatcgag
      661 atgattgcgc aggtgcaatg ccaatgcttt cagcatgagg cctctttcct ggaatgtcat
      721 ttttcgtaat gcgggatttc ccttttgccg ggcatactgg agtaccgcgg caaaatccaa
      781 cccgtcggta gaagtgttgg ccaacggatc gcccgttaca gcgttataga gcagctgacc
      841 atttccggcg ccagccaccc attcaccaag cacatagttt ttgagtgtgt acataaggca
      901 agcatttatt ggaggggcca aaactaacga ttgttagttt gcatcggtca tggcaatgaa
      961 acattcataa aactgctttt tcgccaatta gccatcaccc ctacatttgc ccgaaaatct
     1021 accgttggga attcctaaaa ccattgtctg gattgcttcc ctgtcgtttg taacgctgtt
     1081 gctgatgacg gtgtaccgaa tgcttacatt gtcactactg aaaattgacc tgggtagttt
     1141 ttcattgaat gaagcagcct ggttgggatt ccgctttgac ctgcgatatg tagcatgtat
     1201 cgccttggtt ttattcgccc ttagtttcat cccatcgctg caccccttca agcatcgcaa
     1261 aggcaaacgc ctgcttacca ttatctattc agtgttcata ggtatcctat tgatcctgta
     1321 tgccggtgat tttctcgttc agctggcctt tgaaaaaagg ctatcggtgc agaccattca
     1381 atggagccag gagcaacctg agaaaatccg cagcacgcca tgggtgatcc tggtgctgtt
     1441 tgccggcgtt ggtacctggc tgtcgtatgt agtggcccgt gccttgcacc gattgcagga
     1501 gaaatcgaaa tccgttggca cttctgtgct gcgcatgttt tggcaaggat tgacgctggc
     1561 aggtcttacc gtgtgcattt acggaagtct tgacaatgct tcgctgcgag tgaaaaacac
     1621 acacgctgct aatgatgccg tggtgggcag ctttgtaatt aacccggttg aatcgctcct
     1681 gttcaacccc gggaaataaa caggccttgc cgaaaccgac aaggcctttg tcctcactat
     1741 ttccaaacac cacaaaccga aattctttag cctttcggcg attgataacc ggctttcttt
     1801 tctgcttctt ttgctttttc aaaatcaagg atcacaccgt tgatacagta gcgaagtcct
     1861 gtaggtggtg gcccatcgtc aaacacatgg cccaggtgcg ccttgcaccg gccgcacatt
     1921 acttcggtac gggtcatgcc atgcgagtgg tcgggggtat aaataatagc gcccttgctg
     1981 atgggttcgt aaaagctggg ccagccgcaa ccgctttcaa atttggtgtc acttctaaac
     2041 agtggattgc cgcaggcggc acaatagtag gtgccaattt ccttgaagtt ttcaaacttg
     2101 ctggtccagg ggcgttccgt tcccttttgg cgggctatgt aatacacttc gggagaaagc
     2161 agcttttgcc actcggcatc actgagttcc actttggacg aatcctggcg gttgtaaacg
     2221 gggttggcag gcttcttttc gttttccatt tttaccgatg atttattggc attgctaccg
     2281 ggctgcgaat aagtgcagcc tactgaagtg agatatagca aaccgattaa aattattgct
     2341 ttcataaagg ataaaacaaa ggtttttgaa tactgtttaa ttacgcatac aattgcttga
     2401 cagatctttg gaagtcgttt atttctgtta aacaaatgca aagcaggcat tatattcgcg
     2461 gcctaatttg agacaagcat gttcaacctg gttttgtttg gacctcccgg cagtggaaaa
     2521 ggtacacaaa gtgagaaact cattgaaaaa tacggactga tccatttgag caccggcgat
     2581 ttgctgcgca aagaaatgaa ggccggcact ccgctgggca atgaagctaa aagcctgatc
     2641 gaaaaaggac aattggtgcc cgatgaagtg gtggtaggaa tgatcagctc agcgctggat
     2701 gccaacccgg gcgccacagg atttttgttt gacggcttcc cccgcaccat tgcgcaggcg
     2761 gaggcacttg acaacctgct ggaactgaaa aaaacctcca tcggggccgt cctgtttttg
     2821 atggtgaatg aggatgaact gattaagcgc ctggtaggca gggcccaaac cagcggccgt
     2881 ctggatgacg ccgatccaga gattcagcgc aatcgccaga atgtctataa aaacgaaaca
     2941 ttgccggtag ccggctacta ccagaaccag gacaaagttt cccgcattga aggcgaaggc
     3001 agcattgatg aaattttcga gaggctgtgt ggagtgattg atgccaaaat gcaagcggcc
     3061 tgattcattt tcctgagaaa ttctttggat gccctggaca aaccggggca tttttaattg
     3121 acacaaaaac tgaactttca aacccgtaca gagtttgtac aagggataat tcagaaaaaa
     3181 cgaatgacca tttgattcaa aatatctcta acgcttttac cggtttcatc atgaggaaaa
     3241 tctacgctgc catcttgctg accctggcat tcatggcaag ccaccagggc aacggccagt
     3301 cactcaagcc acaattcgat cgcaacgaat atgctgacat gttgtggctg caattctatg
     3361 ccctctccga ttcattgtct gctggtacat ctttcaaact caactcaggc accttcacaa
     3421 aagttttcag ttcgccggaa gtgggcctgt acaacaagtg cgtcatcttt cagcgtgaag
     3481 atggtgtagt ggtgctggag ttaaggggta ccgtaaacaa gccggaaagc tggttggaga
     3541 atttctacgc cggcatggtg cccgcccaag gatc
//
LOCUS       DATIQF010000249         2190 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_277311,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000249 DATIQF010000000
VERSION     DATIQF010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277311"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..492)
                     /locus_tag="VLL95_03990"
     CDS             complement(<1..492)
                     /locus_tag="VLL95_03990"
                     /inference="COORDINATES: protein motif:HMM:NF013355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38049.1"
                     /translation="MYKFLRTILFFFPPEAVHHFAMNWLKRLSSFSLTRGLLKRMFSP
                     VYAKGPVNLAGLSFKNPVGLGAGFDKNALYLDELELLGFGFVEIGTVTPRPQDGNEKP
                     RLFRLPEDKALINRMGFNNDGADVIAERLKIWRERQASDKQVLMNANHPGRFIVGGNI
                     GKNK"
     gene            633..1808
                     /locus_tag="VLL95_03995"
     CDS             633..1808
                     /locus_tag="VLL95_03995"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HSR38050.1"
                     /translation="MQEAYIVAGYRTAVGKSKRGGFRFMRPDDLAVEVIKGVMQSLPQ
                     LEPGKVDDVIVGNAVPEAEQGLQIGRIISARALGKDVPGMTVNRYCASGLETIAIASA
                     KIRSGLADCIVAGGVESMSLVPTAGWKTVPNYAVSSTDPDYYLSMGLTAEAVAREYKV
                     SREDQDQFSYNSHMKAIRAINEGYFKGGILPITVEEVYLNEKSKRAVRTYVVDTDEGP
                     RTDTNLEALAKLKPVFAADGSVTAGNSSQTSDGAAFVVVMSEAMVKALNVQPIGRLVA
                     CAVAGVEPRIMGIGPVAAIPKVLKQSGMNLSDIDLIELNEAFASQSLAVIREAGLDPE
                     KVNINGGAIALGHPLGCTGAKLTIQNLHDLKRLGKKYGMITACVGGGQGIAGIIERL"
     gene            complement(1970..>2190)
                     /locus_tag="VLL95_04000"
     CDS             complement(1970..>2190)
                     /locus_tag="VLL95_04000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38051.1"
                     /translation="ALRGMSFYDARRWGVIDKDGGRTKAVALQSNGKLSTNATVYYNF
                     LDYWDVPDNELTYNPPAAGSAPVKNPRQ"
BASE COUNT          584 a          545 c          560 g          501 t
ORIGIN      
        1 tttattcttc ccaatattgc cgccaacgat gaaccggcct ggatgatttg cattcattaa
       61 aacctgtttg tcgcttgcct gccgctctct ccaaattttt aatctttccg caatcacatc
      121 ggccccatcg ttgttaaagc ccatccggtt aataagtgcc ttgtcttccg gcaggcggaa
      181 caatcgtggt ttttcattgc catcctgtgg ccgtggggtt acggtaccaa tctccacaaa
      241 tccaaagccc agcaactcca gttcatccag gtacaaagca tttttgtcaa aaccagcccc
      301 gagaccaacc gggtttttaa atgacaaccc tgccaaattc accgggcctt tggcataaac
      361 aggactgaac atccttttga gcaaacccct cgtcaatgaa aaagaactga gccttttgag
      421 ccagttcatg gcaaaatggt gcaccgcttc aggaggaaag aagaaaagga tggtgcgcag
      481 aaatttgtac atagcgctgc gaaagtatct caaaaatgac tgcaggccgg gcaaaaaacc
      541 aatgcgggca ggcatttttc agcacaagaa atttagttgc ataaacaacc attttcatta
      601 tttttacccc tcattaattc aacgattgta gtatgcaaga ggcttatata gttgccgggt
      661 accgtacggc agtgggcaaa agcaaaagag gcggttttcg tttcatgcgg cctgatgatt
      721 tggcagtaga ggtgatcaaa ggtgtgatgc aatcattgcc gcaactggag cccggcaagg
      781 tagatgatgt gattgtgggc aatgcggtgc ccgaagctga gcagggtttg cagatcggcc
      841 ggatcattag tgcaagggca ttaggaaaag acgtaccggg catgaccgtg aaccgctatt
      901 gcgccagcgg cctcgaaacc atcgccattg ccagcgccaa gatccgtagc gggctggccg
      961 actgcattgt ggccggtggc gtggaaagca tgagcctggt gccaacagca ggctggaaaa
     1021 cagtacccaa ctatgccgtc agcagcaccg atcctgatta ttacctgagc atgggcctca
     1081 ctgctgaagc ggtagcccgt gagtacaagg tgagccgcga agaccaggac cagttttcgt
     1141 acaacagcca catgaaagcc atcagggcca tcaatgaagg ctatttcaaa ggaggcatcc
     1201 tgcccattac agtagaagaa gtatacctca acgaaaaaag caaaagagca gttcgtactt
     1261 atgtagtaga taccgacgaa ggaccccgca cggataccaa cctcgaagca ttggccaagc
     1321 tgaaaccagt ttttgcggca gacggctcag tcactgcagg gaactcttcg caaaccagcg
     1381 atggggctgc ctttgtggtg gtaatgagcg aagccatggt aaaagctttg aatgtgcaac
     1441 ctatcgggcg cctggtagcc tgtgcagtgg ctggggtaga accccgcatt atgggcatcg
     1501 gccctgtggc cgccattcct aaggtgctga aacaatcagg catgaacctt tcggatattg
     1561 atctgattga attgaacgag gcctttgcct cacaaagcct cgctgttatc agggaagccg
     1621 gcctcgatcc cgaaaaggta aacatcaacg gcggcgctat cgctttgggt catccgctgg
     1681 gatgcaccgg cgccaagctt accattcaaa acctgcacga cctgaaacgc ctcggcaaga
     1741 aatacggcat gataacggcc tgcgtgggtg gcggacaggg tattgccggg attattgaaa
     1801 ggctgtagat cactggctat acaaaattga atttggcgtg tgtcctgttt tggacatttc
     1861 caattgaata atacccttcc ggatatataa aaaagactgc ccccaggagg ggcagtcttt
     1921 tttattacaa ccatcagcta cagccattaa aaagtagctc tggtcatgat tactgacgtg
     1981 gattctttac cggtgcgcta cctgccgcag gagggttgta ggtaagctca ttatctggta
     2041 catcccaata atcgaggaag ttgtagtaga cagtggcatt ggtactcagc ttgccattgc
     2101 tctgcaaggc aacagccttg gtacgacctc cgtccttgtc gataacaccc caacggcggg
     2161 catcgtagaa cgacatgcca cgcaaggcag
//
LOCUS       DATIQF010000250         4095 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_34047, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000250 DATIQF010000000
VERSION     DATIQF010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4095
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34047"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..202
                     /locus_tag="VLL95_04005"
     CDS             <1..202
                     /locus_tag="VLL95_04005"
                     /inference="COORDINATES: protein motif:HMM:NF014342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HSR38052.1"
                     /translation="GGKPFVAVSIADNVVAAKGLDAGAIIKQHLAPIIKGGGGGQKNL
                     ATAGGQDASNLPQVIEVVKALL"
     gene            299..874
                     /locus_tag="VLL95_04010"
     CDS             299..874
                     /locus_tag="VLL95_04010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38053.1"
                     /translation="MKPFLSFCLLLFAMHSGYSQLNAEQQTIKQTFFSFLKYYQQHET
                     EFNKFRLYKGKGKNDEPPYHIQWSEAEKYFAYLRKNVPYVGEAYIEAERRHFKESEKA
                     FKEYPDEEMPSGFDYDRWAGGQEDIDYTIKWYTSPKNIYKVKINGNKAELRIGGELWK
                     GAKEEDREWSVVPFVKEKGKWKMADNVYPAD"
     gene            complement(875..2152)
                     /locus_tag="VLL95_04015"
     CDS             complement(875..2152)
                     /locus_tag="VLL95_04015"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR38054.1"
                     /translation="MSTVIIFPAIAPSIMQQKQYHLFSLPVIVGALGFFVDIYDLLLF
                     NIVRRSSFRDLGVPEEAMKDIGESIISWQMIGLTIGGILWGIMGDKKGRKSVLFGSIM
                     LYSAATIANGFVQTVDQYTWLRFIAGLGLAGELGASITLTSELLPKEKRGIAAAIIAT
                     SGVLGTITAYFVHYLSGEDWRLCYYIGGGMGIDLLFLRVGVLDSRLYDVTRHAHVQMG
                     NFFMFFNNRERMWRYLRGIFIGLPVWYVIGVMITFSDEFARRFGIEGFDQPKALMLQY
                     VALAFGDMGAGFLSNYLRSRRKTLIIYYGILAFFMFLFFALKGGGTAFNMYAICMGLG
                     FGSGISVVYITMSAEQFGTNLRATAAISIPNLVRGFLPLILLLFQFLRSEKVLNNYST
                     AAAVTGIIIVAIGFWSVLKTPETFEKDMDFLEH"
     gene            2261..2542
                     /locus_tag="VLL95_04020"
     CDS             2261..2542
                     /locus_tag="VLL95_04020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38055.1"
                     /translation="MTRINYLALIAMNLLGIIFVYRRLPAEEGAWMQSVLTPLAIAVL
                     AFNLPAWVACGVDYLFQKKFNARMFNNIVYFFIIVLLLAFFFPGFMKMQ"
     gene            2559..2876
                     /locus_tag="VLL95_04025"
     CDS             2559..2876
                     /locus_tag="VLL95_04025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38056.1"
                     /translation="MKPVFIVIVALVMAVNGCRDAEQEPDGGFCSYKDTEIPARVVGI
                     VPVTPGQYDISLKLDSNNFRMPPEDTISFYMENGHYLDQALFDSLRVDTGSVYTFLVR
                     EIV"
     gene            3065..3907
                     /locus_tag="VLL95_04030"
     CDS             3065..3907
                     /locus_tag="VLL95_04030"
                     /inference="COORDINATES: protein motif:HMM:NF042696.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSR38057.1"
                     /translation="MIFKDFQPHPALSHLVKFYRLRHFVFGVGAEAKMKPYPARPEHC
                     IAFYPRGFTKVDDPVAGLQYIQSKAFISGQYTYRINKYASTPEFLMILVVFHPGALYQ
                     LTGIPASEFQNKGFDLEMIFPAQTRQLNEQLAGANSYPDMLKLIDQFLLSQFSRNDAE
                     YDVPVNKVLRLMMHGHTMKSVEQLAGEACLSMRQLERVFMNRCGISPSKMMQIVRFNK
                     AYQMKLKHPEMSWLRIAMECDYHDYQHLARAFREFAMNSPNQLFETESKAPEHLLGLT
                     KFSA"
     gene            complement(3909..>4095)
                     /locus_tag="VLL95_04035"
     CDS             complement(3909..>4095)
                     /locus_tag="VLL95_04035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38058.1"
                     /translation="VIIFPGLPFYGRTFTVKAPSAIKKSESNTPPSPAGGTETTFHNS
                     KRSNAQGKGKIPYKTYT"
BASE COUNT         1097 a          947 c         1023 g         1028 t
ORIGIN      
        1 tggtggcaaa ccatttgtgg cagtaagcat tgccgacaat gtagtagcgg ccaagggcct
       61 cgatgcggga gccatcatca agcaacacct ggcgcccatc atcaaaggtg gcggtggcgg
      121 ccaaaagaac ctggccactg caggcggaca ggatgcatct aacttgccgc aggtgattga
      181 agtggtgaaa gctctgctgt agaccgcaaa ttacttacca gataatgcag gagtcaatga
      241 acagattgtt tgtcgactcc tgttttgctt tcataaatta gggcaagaat attcctctat
      301 gaaacccttt ctttcgtttt gcctgttgct ttttgccatg cattccggct actcgcaact
      361 aaatgccgag cagcagacca tcaaacaaac cttcttttcc ttcctcaaat attaccagca
      421 acacgaaacg gagttcaaca aatttcggtt gtacaaaggc aaagggaaga atgatgaacc
      481 accctatcac attcaatgga gcgaagcaga gaaatacttt gcctacctgc gcaagaatgt
      541 gccttatgtc ggtgaggctt acatcgaagc ggagcgcagg catttcaagg agtcggaaaa
      601 ggcattcaaa gaatatcctg atgaagaaat gccatccggg tttgactacg accgttgggc
      661 aggcggccag gaggacattg actatactat caagtggtac acttcgccca agaacatcta
      721 caaagtgaaa atcaacggca acaaggccga actgcgcata ggcggcgagt tgtggaaagg
      781 cgccaaagaa gaagaccgtg aatggagcgt ggtgcctttt gtaaaagaaa aagggaaatg
      841 gaaaatggcc gacaatgtgt acccggctga ttgatcaatg ctcgaggaaa tccatgtcct
      901 tctcgaatgt ttccggtgtt ttcaataccg accaaaaacc aatggccaca attatgatgc
      961 cggtaacggc ggcagcagta ctgtagttgt tcaatacttt ttcgctgcgc aaaaactgga
     1021 acagcaataa gataagcggc agaaaacccc gcaccaggtt gggtatggaa atggccgcgg
     1081 tggcacgcag gttggtgcca aactgttcgg cactcatggt gatgtacacc accgaaatgc
     1141 ctgatccgaa accaaggccc atgcagatgg catacatgtt gaaagccgtg cctccgcctt
     1201 tcagggcaaa aaacaggaac atgaaaaacg caaggatgcc gtagtaaatg atcagtgttt
     1261 tccttcgact ccgcaggtaa ttgctgagaa agccggcacc catatcgcca aaggccagtg
     1321 ctacgtattg cagcatcagg gctttgggct ggtcaaaccc ttcaatgcca aagcgacggg
     1381 caaattcatc gctgaaggtg atcatcaccc cgatgacata ccacaccggc aggccaatga
     1441 aaatgccccg caggtagcgc cacattcttt cgcggttgtt gaagaacatg aagaagtttc
     1501 ccatctgaac atgcgcatgc ctggtgacat cgtacaatcg actgtcgagc acacccaccc
     1561 gcaaaaagag caggtcgata cccataccgc caccgatata gtagcacaag cgccagtctt
     1621 cgccgctgag ataatgaaca aagtaggcgg taatcgtacc cagcacgccg ctggtggcaa
     1681 tgatggcagc cgcaatgcct cttttttcct tgggcagcag ctcgctggtg agggtgatgc
     1741 tggcgcccag ttcgcctgcc agccccagcc ccgctataaa gcgcagccag gtgtactgat
     1801 ccacagtttg cacaaagcca ttggcgatgg tagccgcaga gtacagcatg atagagccaa
     1861 agagcacact cttgcgtcct tttttatcgc ccatgatgcc ccacaggatg ccgccaatgg
     1921 taagaccaat catctgccag ctgatgatgc tttctccaat gtctttcatg gcttcctccg
     1981 gcacaccaag atctctgaag ctggaacggc gtacaatgtt gaacaaaagc aaatcgtaga
     2041 tgtccacgaa aaaaccaagg gctcctacaa taacagggag cgagaagagg tggtattgct
     2101 tttgctgcat gatggatggg gcaatagccg gaaagataat gactgttgac attgcatgcg
     2161 gcagcggttg ggtttcacga attttatcct gctgacagga ttgccttctt aagaaagacc
     2221 cggcaagtct taccttagcc atacccgcaa ctacatcagc atgacaagga tcaattacct
     2281 cgctttgata gccatgaatt tactgggcat cattttcgtg tacaggcgtt tgcccgccga
     2341 agagggtgcg tggatgcaat cagtactgac accgcttgcc atcgctgtat tggcattcaa
     2401 tttgcctgcc tgggttgctt gtggcgtgga ttatcttttc cagaaaaaat tcaatgcgag
     2461 gatgttcaac aacatagtct actttttcat aatagtcttg ctgttggctt tctttttccc
     2521 gggctttatg aagatgcaat aatccatagc tgatctgtat gaaacctgtt tttatcgtga
     2581 tagtcgcctt ggttatggca gtaaatggtt gccgcgatgc ggagcaggaa cctgatggcg
     2641 ggttttgcag ttacaaggat acggagatac cggcgcgggt agtaggcata gtccctgtaa
     2701 cccccgggca gtacgatatt tccctgaagc tggacagcaa caatttcagg atgccgcccg
     2761 aggacaccat tagtttctac atggaaaacg ggcattacct cgaccaggcg ctgtttgaca
     2821 gcctgcgagt ggacacagga agtgtataca ctttcctggt aagggagatt gtttagggga
     2881 gctgtaatcc tctcgttacc caggtggaaa tgaagccggt ggtgaattaa cctttggact
     2941 tgttccatct ggcatttgtt tgtgactagt gataggttgc attttagaag tgcagtatgt
     3001 attttagact gactttccag cgaattgatt gggacattag cgatagcggg aaaaaaacta
     3061 tttcatgatc tttaaggact ttcaaccaca ccctgcgttg tcgcatttgg tgaaatttta
     3121 ccgcttgagg cattttgttt ttggcgttgg cgcggaggca aaaatgaagc cttacccagc
     3181 gaggcccgag cattgcattg cattctaccc gagaggattc accaaagtgg atgatcctgt
     3241 tgccggattg caatacattc agtcgaaggc atttatcagc ggacagtata cctatcgtat
     3301 caacaaatac gccagtactc ctgagtttct gatgattttg gttgtcttcc atcctggggc
     3361 tttgtaccag cttacgggca ttcccgcttc agaatttcaa aacaaaggat tcgatctgga
     3421 gatgattttt ccggctcaga cccggcaact gaatgagcag ttggccggcg ccaattctta
     3481 tccggatatg cttaaattga tcgatcagtt tttactgagc caattttcca gaaatgatgc
     3541 tgaatatgat gtgccggtaa ataaggtgtt gcgcctgatg atgcatgggc atacaatgaa
     3601 atctgttgag caattggcgg gagaggcttg cctgtcgatg cgacagttgg aaagggtttt
     3661 tatgaataga tgtggtatca gcccatccaa aatgatgcaa atcgttcgat ttaataaggc
     3721 ttaccagatg aagctgaagc atcccgagat gtcctggtta aggatagcga tggaatgcga
     3781 ttatcatgac taccagcacc ttgccagggc atttcgtgaa tttgcaatga acagtcccaa
     3841 tcaactgttt gaaactgaat caaaggcacc ggagcatttg cttggcctta ccaaattttc
     3901 cgcgtagttc aggtatatgt tttataaggg atttttccct tcccttgtgc gttactccgt
     3961 ttgctattat ggaatgtcgt ttctgtacca cctgccgggc tggggggggt attactttca
     4021 cttttcttaa tggcggaagg agctttcaca gtgaaagttc taccataaaa aggtaaccct
     4081 ggaaaaatta ttaca
//
LOCUS       DATIQF010000251         3355 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_247007,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000251 DATIQF010000000
VERSION     DATIQF010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3355
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247007"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>3355
                     /locus_tag="VLL95_04040"
     CDS             <1..>3355
                     /locus_tag="VLL95_04040"
                     /inference="COORDINATES: protein motif:HMM:NF040284.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HYR domain-containing protein"
                     /protein_id="HSR38059.1"
                     /translation="SNTITVTVNPRPTVTSPNTAIVCSGQSPNISLSANLPATFNWIV
                     GAITGGITGASAGSGTSINQVLINPSTTAQGSVQYLVTATASSGGCTNSPAYSITVTV
                     NPNPAIGLTVGGAGSVCFGNSANITVASSVTGISYQLRNNAGNTVIGSPVLGTGGTIS
                     LPTGSLTAATTFNILATNSTTGCTSQLTATPTVAINPVPTLTDASMSVSPVCPGTAAT
                     IVLSGLIPGSIFNLTYTINNGTPVSLNNRTADASGNHSFTTGVLNGSNNGQVLRVTSL
                     TLVGTGCSQSFARDVVLVVNDQTPPVITCPTERVIYITSGCSATGVNLTAPAATDNCV
                     GTVTITNSHSGSVLTNLTFPVGTTTVTWMATDANGNSATCIQNIKVVKAIVIAEYSFE
                     GLALGAVPATINADNTAGGVTSSLSLQPSNLRTVSAITTPGTATGPMALKVNTGTARA
                     LYSDFKNLSNKNSFVNYYQFTVSNVASFRNYLVYFQVNRDNASGPGTTVMQWSTDGVN
                     YNPGGTFSLAGLNNAWIENLFDMSSITGLNYKTNLYFRFYINDLNGNPQLYFDNFQLL
                     AQNDEIVNATVSSTNVTCIGQANGTITVNNTNSGIWEFSRNGGFTWQDANVFTGLSAG
                     IYDVVMRDKSNPACNVAINRELVLTQPSGTPGVWTGAVSTDWFNCANWASGTVPDNTV
                     DVQLVSSAARSVVIDPNSLFAPTDKIARAKNITIDKNLSFNGAGALYLAGNWQNNLGV
                     SGFSAGTGEVRFMSSSSKQTINTSGASEIFNKLTIANTSNQATSDEVTLLKPVTISPT
                     GVFVLVKGRLLTTSTNSLTLTNDAPAGVDTSGVGNDTYVNGPMSWNALFTGGEYTFPV
                     GKPTGPYGAYRPVGITPNIPGSPGVAQTTTYTSEYFPSAGPGIATRTFLGILKTEHWE
                     IARPVGNLDAVVKLIYIKPNSGDWLAVDPCSTCNVAIAKQYSTTWYFTNYTNTSSGFD
                     MTKPETRWSGDATGPVYSKLLSNFSPFTFGYDYNIVLGNPQTPVVRIKSFNAVLNGMN
                     GELDWNLDGASSVQKVDLEYSADGTSFKKLSNFGPSLYGFYQYIHQQLLAGRHYYRLV
                     VYYNQTAKLVSETRMLEVGKFKTVIHDLP"
BASE COUNT          900 a          820 c          792 g          843 t
ORIGIN      
        1 catctaatac tattacggta actgtaaatc caaggccaac cgtcaccagc cccaatactg
       61 ccatcgtttg cagtggccaa tcgcctaaca tcagcctgtc agccaattta ccagctacct
      121 tcaattggat agttggggcc attaccgggg gtattaccgg ggcttcagca ggcagtggaa
      181 ccagtatcaa ccaggtgctc ataaatccga gcacaacggc gcaaggatcc gtacaatatt
      241 tggttaccgc tacagccagt tcgggaggtt gcaccaatag ccctgcctac agcattacag
      301 taaccgttaa tccaaaccct gccatcggcc tcactgttgg cggagcagga tctgtttgct
      361 ttggaaacag cgctaacatt acagtggcat cctcggtgac cggcatttcg tatcaattga
      421 gaaataatgc cggaaacaca gtgataggtt cacctgtttt gggcaccggc ggaaccatta
      481 gcctgccaac cggtagtctc acggcagcta ctacattcaa tatcctggcc accaactcaa
      541 caaccggatg tacaagtcaa ttgactgcta cgccaacggt tgccatcaat cctgttccta
      601 cacttacgga tgccagcatg tctgtatctc cagtgtgccc gggtacagct gctaccattg
      661 tgttgagtgg ccttatccct ggtagtattt tcaacctcac ctacaccatc aataatggaa
      721 cccccgttag cttgaataac cgaactgctg atgcttccgg caaccattca ttcaccaccg
      781 gggtgctcaa tggatccaac aatggacagg tgctgcgggt aacatcgcta accctggtgg
      841 gaacaggatg ttcacagtca tttgcgagag atgtcgtatt ggtggtgaat gatcagacac
      901 cacctgtcat tacctgccct acagagagag tcatttacat aacctccgga tgtagcgcaa
      961 caggcgtgaa cctcacagcc cctgctgcta ccgacaattg tgtggggact gtcactatca
     1021 ctaacagtca cagtggctct gtcttaacca atctcacttt ccctgtggga accaccactg
     1081 tcacctggat ggcaacagat gccaatggca attcggccac ttgcatacag aacataaaag
     1141 tggtaaaggc aatcgtaatt gctgagtata gttttgaagg cttggcgctg ggagcagttc
     1201 ctgctaccat aaatgcggat aatactgcgg gtggcgttac cagttctttg tctttgcagc
     1261 cttccaattt aagaacagta agcgccatca ctactccagg aaccgccacc ggaccaatgg
     1321 cgctcaaagt aaacacaggg acagcgaggg cattgtattc tgacttcaag aatttgagca
     1381 acaagaattc atttgtgaac tactatcaat tcacggtgtc aaatgtggca agtttcagga
     1441 attacctggt ctatttccag gtcaaccggg acaatgcttc cggacctgga acaacggtga
     1501 tgcaatggag tacggacggg gtgaattaca atccaggggg cacattcagt ttagcgggtt
     1561 taaataacgc ttggatagag aacctgtttg acatgagttc catcactggg ttgaattaca
     1621 agacgaattt gtatttccgt ttctacatca acgatctgaa tggcaaccca cagttgtatt
     1681 ttgacaactt ccagttgttg gcacaaaatg atgaaatagt gaatgccact gtctccagta
     1741 ccaatgtgac gtgtataggg caggcaaacg gcaccataac tgtaaataat accaactctg
     1801 gaatttggga attctccagg aatggaggat tcacctggca ggatgccaat gtattcactg
     1861 gattgagtgc gggtatttac gatgtggtta tgcgtgacaa gagcaatcct gcctgtaacg
     1921 tggcaatcaa tcgcgaattg gtgcttacac agccaagtgg cacacctggc gtttggaccg
     1981 gggcggtgtc tactgattgg ttcaattgcg ccaactgggc gagtggtaca gtaccagata
     2041 atacagttga tgtgcagcta gtgtcctctg cagcacgttc agttgttatt gatccaaact
     2101 cactctttgc acctactgat aaaattgcca gggctaagaa cataactatt gataagaatc
     2161 tgagctttaa tggtgctggt gccttgtacc tcgccggcaa ttggcagaat aatctcggtg
     2221 tttcaggctt cagcgcaggt acgggtgaag taaggttcat gagcagcagt agcaaacaaa
     2281 ccatcaatac ctctggtgca tccgagatat tcaataagct gactattgcc aatacaagca
     2341 accaggctac ttcggatgaa gtgaccttgc tcaaaccagt cactatttct ccaacaggtg
     2401 tatttgtgct ggtaaaaggt cgcctgctaa cgacttccac caattcattg accctcacca
     2461 atgatgcgcc tgcaggcgtg gatacctctg gcgttggcaa cgatacctat gtaaatggac
     2521 caatgagctg gaatgccctc ttcacgggag gagaatatac tttccctgtg ggtaaaccaa
     2581 cgggtccata tggagcctat aggccagtgg gtatcacccc gaatattcct ggttctcccg
     2641 gtgtggcaca aacaaccacc tatacttcag aatacttccc ttcagctgga ccgggtattg
     2701 ctaccagaac tttcctgggg attttgaaaa cagaacattg ggagattgca agacctgtgg
     2761 gcaacctcga tgcggtagtg aagttgatct acatcaaacc taattctggt gactggttgg
     2821 ctgttgatcc atgcagtacc tgcaatgtgg ctattgcgaa acaatacagt actacctggt
     2881 actttaccaa ctatacgaat acatcttcgg gtttcgatat gacgaaacct gaaacacggt
     2941 ggtccggcga tgccacaggc cccgtgtatt ccaaactgct gagcaatttc agtccattta
     3001 ctttcgggta tgattacaat attgtactgg gtaatccgca aacacccgtg gtgcgtatta
     3061 aatcattcaa tgcggttttg aatggcatga atggcgagct cgactggaac ctggatggcg
     3121 ccagcagtgt gcagaaagtt gatttggaat acagcgccga tggaaccagc ttcaaaaagc
     3181 tttccaactt tggaccatcg ttgtacggat tttaccagta tatccaccag cagctattag
     3241 caggccggca ttactaccga ctggttgttt actacaacca gacagcgaag ctggtaagcg
     3301 aaaccaggat gctggaagtg ggcaaattca aaaccgtgat ccatgatttg ccgat
//
LOCUS       DATIQF010000252         1992 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_3674, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000252 DATIQF010000000
VERSION     DATIQF010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3674"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..465)
                     /locus_tag="VLL95_04045"
     CDS             complement(<1..465)
                     /locus_tag="VLL95_04045"
                     /inference="COORDINATES: protein motif:HMM:NF015559.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmD family RNA methyltransferase"
                     /protein_id="HSR38060.1"
                     /translation="MRIIGGKWGGRRISPPTKMPFTRPTTDIAKEGLFNMLQNQIDFE
                     GIKTLDLFGGTGAITYELLSRGAADCTIVEKDPQMFKFITDNLQKLGASGVKPVRMEV
                     FKFLESCHEQYDFIFAGPPYALTTNDAFEKLPIPAILSLFRNATSYGFAGAKK"
     gene            complement(462..1268)
                     /locus_tag="VLL95_04050"
     CDS             complement(462..1268)
                     /locus_tag="VLL95_04050"
                     /inference="COORDINATES: protein motif:HMM:NF024271.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3822 family protein"
                     /protein_id="HSR38061.1"
                     /translation="MVAKSVDSGTNPLLPYEAHTRQLLIEWAATHVHVLLWNKNNNSI
                     EAVESFHGEIADEEDWQIMLGQSRLLPMHDVPVLLLVDSARVLPIPVSLYDPERSKEE
                     LNLYFGPAMWQHTGADFVELFPMVLAWQMPGQVLQYFRQHFQVITVQHLLNTLLHQPK
                     SSEIEGCLVVSEKHVQCVVRRNGDLVHAGVIPVVTPDDLAYRLLNICRQHDILFEEIS
                     WLLSGMIEPDSALYNGISQFLQSLNWREPVHALPSQTPVQYFAHLLPLLS"
     gene            1295..1750
                     /locus_tag="VLL95_04055"
     CDS             1295..1750
                     /locus_tag="VLL95_04055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38062.1"
                     /translation="MDSPIFVYMQVSSKTGSVRSKAMVACIVSYALGLLALFLPAEII
                     VNAGERFAVSLWFQHTGKVVGAFLLVCGLIQLFWWRQTSQWLTWPAWLCSAFVLLFAI
                     RRGGDLFGNSSSTLAGATAGIGLYLLAAAALLLMGANFVLSRQKNSHPQ"
     gene            1761..>1992
                     /locus_tag="VLL95_04060"
     CDS             1761..>1992
                     /locus_tag="VLL95_04060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38063.1"
                     /translation="MIGILVQLALSWLLAWWLARKDLSILGLRPTKSRLTDFALFFAV
                     AAFFSATEFLLKMWIIDQRWHLNPNATPQLILE"
BASE COUNT          451 a          517 c          509 g          515 t
ORIGIN      
        1 cttttttgcg ccggcaaatc cgtaacttgt agcattccgg aataaagaaa gaatggcggg
       61 tatgggaagt ttttcgaaag catcgttggt agtgagtgca tagggtggcc cggcaaaaat
      121 gaaatcgtat tgctcatggc aggattccag gaatttaaac acctccatcc ttaccggttt
      181 tacaccactg gcgccgagct tttgcagatt gtcggtaatg aatttgaaca tctgcggatc
      241 cttttctaca atggtgcagt cggcagcgcc acggctcagc agttcatagg taatggcacc
      301 ggtgccgcca aacaggtcaa gcgttttgat gccttcaaaa tcgatctggt tctgcagcat
      361 attgaacagc ccttccttgg caatatccgt ggtgggccgt gtaaaaggca ttttggtggg
      421 tgggctgatc ctgcggcctc cccatttgcc tccaattatt ctcatgacag caagggtaac
      481 aggtgagcaa aatactgaac cggcgtttgc gacggtaatg catgcacggg ttctcgccaa
      541 ttgagggatt gcagaaactg gctgatgccg ttgtacaagg cagagtcagg ttcgatcata
      601 ccactgagga gccaactgat ctcttcaaac aaaatgtcgt gctgccggca aatgttgagc
      661 aaccggtaag ccaggtcgtc gggcgtaaca acgggaatga ccccggcatg caccaggtcg
      721 ccattgcggc gcactacgca ctgcacgtgc ttttcgctca ccaccaggca gccttctatc
      781 tcgctgctct tgggttgatg caacagagta ttcagcaggt gctgtaccgt gatgacctgg
      841 aaatgctgcc ggaaatattg aagtacctgc ccgggcattt gccaggccag taccatggga
      901 aacagttcca caaaatcagc accggtgtgc tgccacatgg ccggcccgaa atacaggttc
      961 aattcttctt tgcttctttc cggatcgtac aagctgacgg ggattggcag cactcgggca
     1021 gaatccacca ataacagcac cggcacatcg tgcatgggca acaaacggct ttggccgagc
     1081 atgatctgcc agtcttcttc gtcggcaatt tcgccatgaa aagattctac tgcctcaatg
     1141 ctgttattgt tcttgttcca aagcaataca tgcacatgcg tggcagccca ttctatcagc
     1201 aattggcggg tatgtgcctc gtaaggcaac aaaggattcg taccgctatc aacagatttt
     1261 gcaaccattg cagcaaacgt aagccatttt acaaatggat agccccatct ttgtttacat
     1321 gcaggtaagt tcaaaaaccg gtagtgttcg ttccaaagca atggtggctt gcatcgtgtc
     1381 gtatgccttg ggattgcttg cattgttttt gcccgccgaa atcattgtga atgccgggga
     1441 gcgttttgcg gtgagtcttt ggtttcaaca caccggcaaa gtggtgggcg cctttctatt
     1501 ggtttgcggg ctgatccaac ttttctggtg gcgtcaaacc agccaatggc tcacctggcc
     1561 ggcctggctt tgcagtgcat ttgtgttgct gtttgctatc aggcgtggcg gtgatctatt
     1621 cggaaattca tcttccacgc tggcaggtgc aacggcgggc atcgggctat acctgttggc
     1681 tgcagcggcc ttactattga tgggtgccaa ttttgttcta tcccggcaga aaaacagcca
     1741 cccgcaataa ttacccattc atgattggca tacttgttca actcgccctg tcgtggctgc
     1801 tggcctggtg gctggcccgc aaagaccttt ccatccttgg cctccgtccc accaaaagcc
     1861 ggctgaccga tttcgccctc ttctttgcag tggctgcatt tttcagcgcc accgagtttc
     1921 tcctgaaaat gtggatcatc gatcaacgct ggcacctgaa tcccaatgcc actccacaac
     1981 tcattctcga ag
//
LOCUS       DATIQF010000253         3559 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_64468, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000253 DATIQF010000000
VERSION     DATIQF010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3559
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64468"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..870)
                     /gene="pepT"
                     /locus_tag="VLL95_04065"
     CDS             complement(<1..870)
                     /gene="pepT"
                     /locus_tag="VLL95_04065"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045148 - tripeptide aminopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HSR38064.1"
                     /translation="MDYQYTVLDRFLRYVQVDTQSDPNSLSSPSTEKQKQLSAMLAKE
                     LQDMGLADAHMDEYGYVYASIAANTNKSVPAICFCSHVDTAPDCSGTNVKPIVHRIYD
                     GSDIVLPDDKTQIISPNQYPYLLKKKGDDIVTASGLTLLGADDKSGVAVIMDMAHYLA
                     THPKINHGPIKILFTPDEEVGRGTAKVDLQKLGAQFGYTLDGGEAGDLEDETFSADGV
                     EIVVHGISVHPGTAKGVMVNALKVAGAILNALPQQEWSPETTEKREGFVHPVQMNGIA
                     EKASIHFIVRDFET"
     gene            936..1820
                     /locus_tag="VLL95_04070"
     CDS             936..1820
                     /locus_tag="VLL95_04070"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HSR38065.1"
                     /translation="MIPTFNIRMIKVSIWVKLLLAIPAALVAQRGMVALGDWLTMKLL
                     PAQGANPMSTMLPLAANCSALAFVLVASLFTLLLDKQPLSVLGFQLKNALRRSSMGIG
                     VAMLIIGLIALVLWILGYAAFWYSGLAFLQVASMLFTMIMIAIGEECFCRGYIQRNLQ
                     QKLSPLTALVISAAVFMLMHIGNPSKNMLAMPGIFTGGLLLGINYLYTGNLWFGIALH
                     TSWNFIQGPLLGFVVSGLHLPSVLIQTNTGPDWMTGGSFGPEASVLACVLNIAMTILL
                     SKYFRKQLATTTPTVAYQ"
     gene            complement(1801..>3559)
                     /locus_tag="VLL95_04075"
     CDS             complement(1801..>3559)
                     /locus_tag="VLL95_04075"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GH92 family glycosyl hydrolase"
                     /protein_id="HSR38066.1"
                     /translation="ASRRVGVHRYTFPASEKSMIKIDLGFAINWDKATECQLRQVSPT
                     RFVGYRKSTGWAKKQVVYFALDISKPVNDLVLFADKKKAGSSTATAQDVKAFLQFSTR
                     EKEQIILKVGLSFASVEGAVASLKETDGKTFDVVQKEATASWEKELSKVVVTSKDESF
                     LRTFYTAFYHTCMAPFTFSDATGSYTGADGKVHQSATPVYSVHSLWDTFRGANPLNTV
                     FQTERVPHIIQSYLSFYKQHGLLPVWDLYFNETNTMTGYHAVPVIADAILKGIKGFDY
                     NLAYEAMKASAMQNIRATDYYRQFGFVPQDKHGWSVTMTLEYAYDDWCIAQVAKKLGK
                     QDEYEMFTTRSLSYRKLFDPRTGFFRAKNKNGKWVEPFDPYYSEHGFEGMYIEGTAWQ
                     HTFFVPHAVEDYARLLGGKDKLLEKLDTLFTTTSQMHGENVSSDISGLIGQYAHGNEP
                     SHHIAYMYTALGQPHKAAKRCWQVMTTLYSDKPDGLAGNEDCGQMSAWYVWSALGMYP
                     MNASSGRYLFGTPMVDKATIKLPNGKSFSIEVKRASAASKYIQSVQLNGKTIPVKDIT
                     HQQLMQGGKLQFVLTDKPQ"
BASE COUNT          831 a          916 c          838 g          974 t
ORIGIN      
        1 tgtttcaaaa tcacgaacga tgaaatggat ggatgctttt tctgcaatgc cattcatttg
       61 tacggggtga acaaaaccct cccgcttttc agtggtttcg gggctccact cctgctgagg
      121 caacgcattc aaaattgcgc cggccacctt cagggcattt accatcacac ccttcgccgt
      181 gccgggatgt acgctgatgc catgcaccac aatttccacc ccatcggcgc tgaaagtttc
      241 atcctccagg tcgccggctt caccaccatc cagggtatat ccaaattggg cgcccagttt
      301 ctgcaaatcc actttagcgg taccacgacc cacttcctca tcgggagtaa acaggatttt
      361 tatggggccg tgatttattt tgggatgggt agccaggtag tgggccatat ccatgatcac
      421 cgccacgccg cttttatcat cggcacccag cagcgtcagc ccactggccg ttacaatatc
      481 atcccctttc tttttgagca ggtaaggata ctggttgggt gaaatgattt gggtcttgtc
      541 atcgggcagc acgatatctg aaccatcgta aatcctgtgc acaataggtt tcacgttggt
      601 gccgctacaa tccggtgcgg tatctacatg gctgcaaaag caaatagcgg gaacagattt
      661 gttggtgttg gcggcaatgc tggcgtacac gtagccatac tcatccatat gggcatcagc
      721 caggcccata tcctgcaact ctttggccag catagccgac aattgttttt gcttttcagt
      781 tgaaggactg ctgagactgt tgggatcgct ttgagtgtcc acctgaacat atctcaggaa
      841 acggtcgagc acggtatact gataatccat aaggaaattt ttttctggtg aaaccaattt
      901 gaaaatctca acgttcgggc agcaagaata attaaatgat ccctactttc aatatccgta
      961 tgatcaaagt aagcatttgg gtaaaactac tgctggcaat acctgcggca cttgtggcgc
     1021 agcgaggaat ggtagcgctg ggagactggc tcaccatgaa actgttgccc gcacaaggtg
     1081 ccaatcccat gagcaccatg ctaccgctgg cggcaaactg ttcagccctg gcatttgtgc
     1141 tggtggcctc cttgtttacc ctgctgctcg ataaacagcc actcagcgtg ctcggattcc
     1201 agttaaaaaa tgccctgcga agatcttcga tgggaatagg cgtggcaatg ctgatcatcg
     1261 ggctcattgc gcttgtcttg tggatattgg gctatgctgc tttttggtac tcagggttgg
     1321 ccttcctgca agtggccagt atgctgttta ccatgatcat gatcgccatc ggggaagaat
     1381 gtttttgccg cggttatatc cagcgaaacc tgcaacaaaa actttctcca ttaactgccc
     1441 tcgtgatcag tgcggctgtt tttatgctga tgcatatagg caatccttcc aagaacatgc
     1501 tggccatgcc cggcattttc actggcggcc tactgttagg tatcaactac ctctacaccg
     1561 ggaatctttg gtttggcatt gccctgcaca ccagctggaa ttttatacag ggaccattgc
     1621 tcggatttgt ggtgagtggc ctgcatctcc cctccgtgct cattcaaacc aataccggcc
     1681 ccgattggat gacgggcggc agcttcgggc ccgaagcatc agtactcgcc tgtgtgctga
     1741 acattgccat gaccattttg ctgtcgaaat atttccgcaa acaattagcg acaactactc
     1801 ctactgtggc ttatcagtaa gcacaaactg cagtttgcca ccctgcatca gttgctgatg
     1861 cgtaatgtct ttcaccggga ttgtttttcc attgagttgt acagactgaa tgtatttgct
     1921 ggcagcactg gcccgtttca cttcaatgct gaacgattta ccattgggca atttgattgt
     1981 tgctttgtct accattggcg tgccaaacaa atacctgccg ctggaagcat tcatgggata
     2041 catgcccaag gcgctccata cataccaggc gctcatttgc ccgcagtctt cattgccagc
     2101 caacccatcg ggtttgtcgc tgtacaaagt ggtcattacc tgccagcaac gtttagcggc
     2161 tttgtgcggc tgacccaatg cggtatacat gtaggcgatg tggtgactcg gttcattgcc
     2221 atgagcgtac tgaccgataa gtccggaaat atcactgctc acgttttcgc catgcatttg
     2281 gctggtggta gtgaacaatg tgtccagttt ttccagcagt ttatcctttc cgcccaacag
     2341 cctggcatag tcttccacgg catgaggcac aaaaaaggta tgttgccagg cagtaccctc
     2401 aatgtacatc ccctcgaaac catgctcgct gtagtaagga tcaaaaggct ctacccattt
     2461 gccatttttg ttctttgccc tgaagaaacc tgttctggga tcaaataatt tgcggtagct
     2521 gagtgaacgg gtagtgaaca tctcgtactc atcctgcttg ccgagttttt tagccacttg
     2581 cgcaatgcac caatcatcat aggcatactc cagcgtcatc gtcacgctcc aaccgtgctt
     2641 gtcttgtggc acaaaaccaa attggcggta atagtccgtg gccctgatat tctgcatggc
     2701 gctggccttc atggcttcat aagccaggtt gtaatcaaac cctttgatgc ctttgaggat
     2761 ggcatcagca atgaccggca ctgcgtggta gcctgtcatg gtattggttt cattgaaata
     2821 cagatcccat accggcaaca agccatgctg tttgtaaaaa ctgagatagg attgaataat
     2881 gtgcggcacc ctttcagttt gaaacactgt attcaagggg ttggcgcctc ggaaggtgtc
     2941 ccacagtgaa tgaacagaat ataccggcgt tgcagactga tgaactttgc catccgcacc
     3001 tgtgtaggat ccggttgcat cactaaaggt gaacggtgcc atgcaagtat ggtaaaaggc
     3061 ggtgtagaac gtacgcagga aagattcatc cttcgaagtc acgaccactt tggacagttc
     3121 cttttcccaa ctggccgtag cttctttctg taccacatca aatgtttttc catccgtctc
     3181 tttcagtgat gccacagcgc cttccacgga tgcaaaactc aaaccgactt tcagaatgat
     3241 ctgttctttt tcacgggtag aaaattgaag aaaggctttc acatcctggg cagtggcagt
     3301 tgagctgcct gcttttttct tgtcggcaaa caataccaga tcattgaccg gcttgctgat
     3361 gtccaaagcg aaatagacca cctgcttctt tgcccagccg gtgcttttcc tgtatcccac
     3421 aaaccttgtt ggtgacactt gcctgagctg acattcggta gccttgtccc agttgatggc
     3481 aaagcccaag tctatcttga tcatggattt ttcgctggca ggaaatgtat aacgatgcac
     3541 cccaaccctt cttgaagca
//
LOCUS       DATIQF010000254         2833 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_49470, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000254 DATIQF010000000
VERSION     DATIQF010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2833
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49470"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1805)
                     /locus_tag="VLL95_04080"
     CDS             complement(<1..1805)
                     /locus_tag="VLL95_04080"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HSR38067.1"
                     /translation="MKNYFALALALLCHVAFAQKKPAADTRLQGLDAELEQVLKDWKA
                     AGFAVAVIEKDKVVYAKGFGVRDIKTRQPITPNTLFAIGSCTKAFTSALVGQLVADGK
                     FTYDEPVRNYFPELKFFNGDMNNLTSMRDMMSHKTGLPRHDLSWYFNQSDNRDSLIQR
                     IQYMEPTYKPKEKYQYNNFMFLAQGKVVEKFTKQSWELNMREKIFKPLGMERSNMPYS
                     AVKADTNLASPHSYKNDSTLRIVPHYNIAGMGPAGAVYSSVLEMSKWVQTWIYGGKYN
                     GVQVVAPSHFKEATTGQVVMGAGIPDKEHPDVIGGYYGLGWMVSGYRGHYQVEHGGAI
                     DGFIASTCFFPNDSIGIVVLSNQDSRIVPAVVRRLISDRMLNLPKVNWNKENLEATAK
                     ARKQADSVKMKASFTRSAKGATHELATYEGIYNHPAYGSYEVFVKNDSLFLSNRKTLL
                     WLMNWHYDIFYPFEIIPGEKIDTADKGSISFRFNTAVNGEIESIHAFGFEAPTIELVF
                     KKTPKPKALTKGELESYTGEYDLGGATAKVYIKGDNTLFVEVPGQPPYELVYTGNDKF
                     VFKILSSYAVQFEKKAGEPASAVTFLQPQGNFTAK"
     gene            complement(1818..>2833)
                     /locus_tag="VLL95_04085"
     CDS             complement(1818..>2833)
                     /locus_tag="VLL95_04085"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSR38068.1"
                     /translation="KIAALEAYGLIDENGHPLELKALLHASGQAAMATLFFSTLQAGD
                     KVLSHHSLYGGTYELLTRVLANSGIEPIIEDLHDLQKAEEWLRNDPSIKMVHIETPAN
                     PTIQCVDLEALTALAKRYNKLVSVDNTFATPYLKQPFQYGVDFVFHSTTKFLNGHGNA
                     IGGVLLGRDIHFMKTKAWKWHALLGGNANPFDAYLLTQGIKTLELRMERHCHNAMEVA
                     YFLDSHPAIAHVNYTGLPSHPDYYISAKQMKHPGPMMSFELKGGLDAGKAFINKLQMC
                     TRAVSLGTVDTLVSHPASMSHAGVSREDRLLFGITDGLIRMSVGIENIEDILTDLAQA
                     LSE"
BASE COUNT          612 a          694 c          735 g          792 t
ORIGIN      
        1 cttttagcag taaaatttcc ctgtggttgc aggaaggtga cagcactggc tggctcccct
       61 gccttctttt caaactgcac tgcgtaggag gatagaatct taaacacgaa cttgtcgttt
      121 ccggtataaa ccagttcata agggggctgg ccgggtactt ctacaaaaag agtattgtcg
      181 cctttgatgt atactttggc ggtggcacct cccaggtcat attcaccggt ataggattcc
      241 aattcccctt tggtgagcgc ctttggtttt ggggtcttct tgaataccag ttctatggtt
      301 ggcgcttcaa agccaaacgc atgtatggat tctatttctc cgttcactgc ggtgttgaat
      361 cggaaggata tactgccttt gtcggcagtg tctatttttt caccgggtat tatctcgaac
      421 ggatagaaaa tgtcatagtg ccagttcatc agccacagca gggttttgcg attgctcagg
      481 aagaggctgt cattttttac aaatacttcg tagctgccat aggcggggtg gttgtaaatg
      541 ccttcatagg tggccaattc atgggtggca ccctttgcac ttcgggtgaa agaggctttc
      601 attttcacgg agtcggcttg tttgcgggct ttcgctgtag cctccaggtt ttccttgttc
      661 cagttcactt tgggcagatt caacatccgg tcgctgatga ggcggcgtac cactgccggc
      721 actatgcggc tgtcctggtt ggaaagcact acaatgccaa tgctgtcgtt ggggaagaaa
      781 caggtcgatg ctatgaaacc gtcaatggcg ccaccatgtt ctacctggta gtggcccctg
      841 tagccggata ccatccatcc caagccatag tatccgccga taacgtccgg gtgttctttg
      901 tcgggaatgc cggcacccat cacaacctgc ccggtggtgg cttctttgaa atgcgaaggc
      961 gccactacct gcacgccatt gtacttacca ccatagatcc aggtttgcac ccatttgctc
     1021 atttccaata cactgctgta cactgctccg gcagggccca tgccagcaat gttgtagtgc
     1081 ggcactatgc gaagtgtgct gtcattcttg tagctgtggg gtgaagccag gttggtgtcg
     1141 gccttcacgg cggagtaggg catattgctg cgctccatgc ccagcggttt gaatattttt
     1201 tcccgcatgt tcaattccca gctttgctta gtgaacttct ccaccacttt gccttgtgcc
     1261 aggaacatga aattgttgta ttggtatttt tccttgggct tgtaagtggg ctccatgtat
     1321 tgaatgcgct gaatgagact gtcgcggtta tcgctctggt tgaagtacca cgacaaatcg
     1381 tgccgcggta accctgtttt atggctcatc atatcccgca tgctggtgag gttattcatg
     1441 tcgccattga aaaacttgag ctcgggaaag tagttgcgca ccggttcatc gtaggtaaat
     1501 tttccatcgg ctaccaactg cccgaccagc gcagatgtaa atgctttggt gcaggagcca
     1561 atggcaaaca aggtgttggg ggtgatgggc tgccgggtct tgatgtccct taccccaaag
     1621 cctttggcat ataccacttt gtctttttca attacggcca ctgcaaagcc cgccgccttc
     1681 cagtctttca atacctgctc cagttcggca tcaaggcctt gcaggcgggt atctgcagct
     1741 ggtttttttt gggcaaaagc tacatggcaa agcagggcca atgccagggc aaaataattt
     1801 ttcattgggt gattgtttta ttctgataaa gcctgtgcca ggtcggtcag gatgtcttca
     1861 atgttttcga tgcccacact catgcggata agaccgtcag tgatcccaaa aagcaaccgg
     1921 tcttcgcggc tgacaccagc atggctcatg ctggcaggat gactgaccag tgtatcaaca
     1981 gtgcccaatg ataccgcacg ggtgcacatt tgcagtttat tgatgaatgc ttttccggca
     2041 tccaacccgc ctttcaattc aaagctcatc atggggccgg ggtgcttcat ttgtttggca
     2101 ctgatgtaat aatcggggtg cgaaggcagc cctgtgtagt ttacatgggc gatggcagga
     2161 tgcgagtcca ggaaatacgc tacttccatg gcgttgtggc aatgccgttc catgcggagt
     2221 tccagcgttt tgatgccctg ggtcagcagg taggcatcaa aaggattggc attgccgcct
     2281 aacagcgcat gccatttcca cgcttttgtt ttcatgaaat gaatgtcacg acccagcagc
     2341 acgccaccta tggcattgcc atgaccattg aggaatttgg tggtggaatg aaacacaaaa
     2401 tccacgccat actggaaggg ttgcttaagg taaggcgtag cgaaggtgtt gtctaccgaa
     2461 actaacttat tgtagcgttt ggccagtgct gtcaaagctt ccaggtctac gcactggata
     2521 gtgggattgg caggtgtttc aatatgcacc attttgatgg agggatcatt gcgcaaccat
     2581 tcctccgctt tttgcaagtc gtgcaggtct tcaatgatgg gctcaatgcc gctgttggcc
     2641 agcaccctcg tcagtagttc gtaagtgcca ccatacaatg aatgatgcga caaaaccttg
     2701 tcgccggctt gcagggtgct gaagaaaagt gtggccatcg ccgcttgtcc gctggcatgc
     2761 agcaaggctt tcagttccag cgggtgccca ttttcatcta tcaatccata ggcttccaat
     2821 gctgcaattt tct
//
LOCUS       DATIQF010000255         1851 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_19029, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000255 DATIQF010000000
VERSION     DATIQF010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1851
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19029"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1303)
                     /locus_tag="VLL95_04090"
     CDS             complement(<1..1303)
                     /locus_tag="VLL95_04090"
                     /inference="COORDINATES: protein motif:HMM:NF022481.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2723 domain-containing protein"
                     /protein_id="HSR38069.1"
                     /translation="MKFNRLNNIVGWIVFLIASAVYVLTAEKNGSLWDCGEFVASCFK
                     LQIPHPPGAPMFVLLGRFFIILFGDNPATAAKAVNIMSALASSATILFLFWTITHFAR
                     KLVNPDVESINSTQALTILGAGAVGALAYTFSDSFWYSAVEGEVYALSSFFTALVFWA
                     MLKWEHQVDKDARTEEGAGHWNADRWIVFIFFMMGLSIGVHLLNLLTIPAIVMIYYFK
                     RYEVTKKGTIWAFLIGCLITGVVQKFVIQYSIKGAGHFDIFFVNSLGLPFFSGFATFF
                     VLLAVAVWFGLRTATKKGWYFLRLGLWCFAFMLIGYSSYLTTMVRSSADPSVDMYNVD
                     NPMSLVGYLGREQYGDFPLVYGQVFTAQSRNTSRSEGSMRYQKSNTEGKYIELGPEVK
                     EEYDPADKMFFPRVWDRSNDQQHADYYAQFLGIGKSNDPKVQ"
     gene            complement(1466..>1851)
                     /locus_tag="VLL95_04095"
     CDS             complement(1466..>1851)
                     /locus_tag="VLL95_04095"
                     /inference="COORDINATES: protein motif:HMM:NF025442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4258 domain-containing protein"
                     /protein_id="HSR38070.1"
                     /translation="LAILVVALLVVKLLQTGNQQPEPAQSEQQSSRGLNRQPGKINYS
                     KHARCRMACRHISEQEVEEILKNGSINYRKSEIGDRPECRRKYALEGNTNDGQRVRII
                     FAPCRGEVTVVTVIDLGQEWACDCQ"
BASE COUNT          465 a          492 c          465 g          429 t
ORIGIN      
        1 cctgcacctt gggatcgttg cttttgccaa tgcccaggaa ctgcgcataa taatcggcgt
       61 gctgctgatc gttgctgcgg tcccatacgc gggggaaaaa catcttatcg gcaggatcgt
      121 attcttcttt cacttcaggg cccagttcaa tgtacttgcc ttccgtgttg cttttctggt
      181 agcgcatgct gccttcggaa cggctggtgt tgcggctttg cgctgtaaac acctgtccgt
      241 aaaccaatgg gaagtcgccg tactgctcac gaccgagata acccacgagg ctcatggggt
      301 tgtctacatt gtacatgtcc acactgggat cggcgctgct gcggaccatg gtggtcaggt
      361 agctgctgta gccgatgagc ataaacgcaa aacaccacaa gccaaggcgc aaaaagtacc
      421 aacctttttt ggtggcagta cgcaaaccaa accatacggc aacagccagc aatacaaaga
      481 aggtggcaaa gccgctgaag aaaggaagac cgagactgtt gacaaagaaa atatcgaaat
      541 ggccggcgcc tttgatagaa tactggatca caaatttctg caccacaccg gtgatcaaac
      601 agccaatgag aaaagcccag atcgtgcctt ttttggtcac ctcgtaacgt ttgaaataat
      661 agatcattac gatggccgga atggtaagca ggttcagcag gtgtacgcca atgcttaagc
      721 ccatcatgaa gaagatgaac acaatccatc ggtcggcatt ccagtgcccc gctccttctt
      781 cggtacgggc atctttatcg acctggtgtt cccatttcaa catcgcccaa aacaccagcg
      841 ccgtaaagaa ggaactcaaa gcatacactt cgccttccac cgcactatac cagaacgagt
      901 cgctgaatgt ataagccaat gcacccacgg cgcctgctcc caaaatggta agtgcttgtg
      961 tgctgttgat gctttcaaca tctggattta ccagtttgcg ggcaaagtgg gtaatggtcc
     1021 aaaacaaaaa gagaatggtg gcactactgg ccagtgcact catgatgtta accgccttcg
     1081 cggcagtggc cgggttgtcg ccaaacaaaa tgatgaaaaa gcgacccagc aatacaaaca
     1141 ttggagcgcc gggcgggtgc ggaatctgga gtttgaaaca gctggccaca aattcgccgc
     1201 aatcccaaag gctgccattt ttttcggcag taagtacata cacggcactg gcaatcaaaa
     1261 acacgatcca acctacgatg ttgttcaacc ggttaaactt catacaacag agaaattagt
     1321 tcaaggggcc ggctggcccc gattggttaa atgtggtggc gaatataggc aactgcccgt
     1381 ttggggggaa catatttacc caccgccgcc gttaaagttg gcactgaatt ggttcatcct
     1441 gtaaaggccc ctggaatgcc cgtccttact ggcaatcgca ggcccattcc tgcccaaggt
     1501 ctatcaccgt cactaccgtc acttccccgc ggcagggagc aaaaatgatc cgcacccttt
     1561 ggccgtcatt ggtatttcct tccagggcat atttccggcg gcattccggc cggtcaccaa
     1621 tttcgctttt gcggtagttg atgctgccat ttttcaggat ctcctccacc tcctgctcgc
     1681 tgatgtgacg gcaggccatg cggcagcggg catgtttgga ataattgatc ttgccgggct
     1741 ggcgattgag accccgggag gattgctgtt ctgattgggc aggctccggt tgctgattgc
     1801 cggtctgaag caattttacc accagcaatg ccactaccag tatggccaat g
//
LOCUS       DATIQF010000256         2210 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_186328,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000256 DATIQF010000000
VERSION     DATIQF010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2210)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2210)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2210
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186328"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1713)
                     /locus_tag="VLL95_04100"
     CDS             complement(<1..1713)
                     /locus_tag="VLL95_04100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38071.1"
                     /translation="MERSEKAGLIHTFSKGHLVRYVLWLIAAAWVYTLSVIIDNYWSR
                     YASYQSVTEAFQKSLRKKENAFFDFLNKDTAALSAFVNGKYTEPALKQLEAQPFHVYL
                     YYTGQTGRDPFFWSSSQVVPPVPSAAQLRSGQLYKYGNGHYEILHQTINIGGASIEAV
                     GLILLHRQYFIDNARLQKGFPGFANLEGRMLFSQERTPYSIKNAKNQVLFYLQPAVTT
                     PFRFFSWLSFTVQLIATVLLILLISFIASDILQTGRPFNGFLVFGLGYLLLWASIRQY
                     GIPINMDQFAWIEKSDALVLSPTGLLNVLQNALFVFWLGWFLTSQSVHIGALLSKLHY
                     KWKAMVSILLILGAISVHFGVIESICDLYLSAAVAFDFNNFFSLNYTTIIAFVVLFLI
                     LMAHLMLVRFFIRTLLFISGGNIQFVLIALLAGGLLILSVGSFLEYKIQLLFSMLWLM
                     GFAWYICRFPRPAFPLSSARMVAWLLVYSISVGLLLGQLSDQRLQKRLYDIGRTLLMQ
                     NDQTSNYLVRFASAGVRRLDWASIIDQSKNSSQSSEVRDSLASKYFGGYLDRFETKFY
                     FYDDD"
     gene            complement(1686..>2210)
                     /gene="mazG"
                     /locus_tag="VLL95_04105"
     CDS             complement(1686..>2210)
                     /gene="mazG"
                     /locus_tag="VLL95_04105"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF007113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HSR38072.1"
                     /translation="MDEVIEGICKKLVDRHPHIYGDVKVIDEEEVKQNWEKLKLKEGK
                     QSVLSGVPNGLPAVVKAWRMQEKAKKVGFEWENKEDVWKKVEEEMEELHEADRSGDPS
                     KIEEEFGDLLFSLINYARFLQVDPETALEKTNRKFKSRFMKMEAEALARQTSLDDMTL
                     KEMDAIWNEVKKQD"
BASE COUNT          620 a          562 c          481 g          547 t
ORIGIN      
        1 atcatcatca tagaaataga attttgtttc aaagcgatcc aggtaaccac caaagtattt
       61 actcgccagc gaatcacgca cttcactgct ttgggagctg ttctttgact ggtcaataat
      121 cgaagcccaa tccaaccgac gaacaccggc cgaagcgaaa cgtaccaggt agttgctcgt
      181 ttgatcattt tgcatgagca gggtgcgccc aatatcatac aaacgctttt gcaggcgctg
      241 gtccgacaac tggcccagca gcaagccgac agaaatggaa tacaccagga gccacgccac
      301 catgcgggct gaagacaatg ggaatgcggg gcgggggaac ctgcatatat accaggcaaa
      361 tcccattaac cacagcattg aaaaaagcaa ttggattttg tattcgagaa aactgccgac
      421 cgacaaaatg agcaaacctc cggccagcaa ggcaatcagt acaaactgga tattgccacc
      481 actgatgaag agcagtgtcc gtataaaaaa acgaaccagc atcaggtgtg ccatcaaaat
      541 gaggaacagc accacaaagg ctatgatggt cgtgtagttg aggctgaaaa agttattgaa
      601 gtcgaatgcg actgcagcac tcaggtacaa atcgcaaatg ctctcgatca cgccaaaatg
      661 cactgaaatg gctcccaata tcagcaggat cgataccatt gccttccact tataatgcag
      721 tttgctcagc aaggcgccaa tatgaactga ctgcgaggta agaaaccaac ccagccaaaa
      781 aacaaacagt gcgttttgca gtacgttcaa caacccggtt ggtgacagca ccaatgcatc
      841 gcttttttcg atccatgcaa actggtccat gttgatggga atgccatatt gccggattga
      901 agcccataac aacaggtagc ccaggccaaa cacgagaaaa ccattgaacg gccggcctgt
      961 ttgcagaata tcggaggcaa taaatgagat cagcagaata agcaagacag tggctatcaa
     1021 ttgcacagta aatgaaagcc acgagaaaaa cctgaacggg gtggttactg caggctgcag
     1081 gtagaacaat acctggttct ttgcattctt aatgctgtaa ggcgttcgtt cctgcgaaaa
     1141 aagcattctg ccttcgaggt tggcaaatcc cggaaaccct ttttgcaaac gggcattatc
     1201 aatgaaatat tgacggtgca gcaaaatgag tcccacggct tcaatggaag cgccaccaat
     1261 gttgatggtt tgatgcagga tctcatagtg accgttgcca tacttgtaca attggcccga
     1321 cctcagttgg gcagcagatg gtacgggagg cactacctgg ctgctgctcc aaaaaaacgg
     1381 atcccttccg gtttgcccgg tatagtacag atacacatga aatggctggg cttccaattg
     1441 cttgagggca ggctccgtgt atttgccatt tacaaaagca gacagcgccg cggtatcctt
     1501 gttcagaaaa tcgaaaaaag cattttcctt tttgcgcaat gacttctgga atgcctcggt
     1561 tacagattga taagaagcat acctcgacca ataattgtcg ataataaccg acaaggtata
     1621 cacccaggca gccgctatca gccaaagcac ataccgcacc aaatgccctt tgctgaaagt
     1681 atggatcaat cctgcttttt cacttcgttc caaatggcgt ccatttcttt tagggtcata
     1741 tcatccaggc tcgtttgtct tgccagggcc tcagcctcca ttttcatgaa gcggcttttg
     1801 aacttgcggt tggttttctc caaggcagtc tcagggtcta cctgcaaaaa ccttgcataa
     1861 ttaatgaggc tgaacaggag atcgccaaat tcctcttcaa ttttggaagg atctcctgag
     1921 cggtcggctt cgtgcaattc ttccatctcc tcctccactt ttttccatac gtcttcttta
     1981 ttctcccatt caaagccaac tttctttgct ttttcctgca tgcgccaggc tttcaccaca
     2041 gcaggcagtc cattgggcac accactcagc accgattgct ttccttcttt caatttcagt
     2101 ttttcccaat tctgtttcac ctcttcctcg tctatcactt ttacatcgcc gtaaatgtgg
     2161 gggtgacgat ctaccagttt cttgcaaatc ccttcaatca cttcgtccat
//
LOCUS       DATIQF010000257         1586 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_94878, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000257 DATIQF010000000
VERSION     DATIQF010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1586
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94878"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..224)
                     /locus_tag="VLL95_04110"
     CDS             complement(<1..224)
                     /locus_tag="VLL95_04110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38073.1"
                     /translation="MKKGIGHAQSGHKIRGCDLPTTGQNRECIHGLSTIPGWEPPPIY
                     PVSIDQKNLSFAHASIPAFRPAGHWVAGFS"
     gene            204..>1586
                     /locus_tag="VLL95_04115"
     CDS             204..>1586
                     /locus_tag="VLL95_04115"
                     /inference="COORDINATES: protein motif:HMM:NF023283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3375 family protein"
                     /protein_id="HSR38074.1"
                     /translation="MTDTFFQYRTLHHFLQQSLSLRLLRSGHAAMSISFLHKVFRQAN
                     VLQVPLSDMTQKLADYLAGIGFLEEGEEFQTLNYITSDYFERADTYIKRWADEENRFI
                     FINIDEKTHEPYVTLTRHTEKVFQALELLREKDFVGAESKLLDLFTKVQELVQRTNED
                     PDERIKALQEKRKQVEEEIKLIRQTGEVPVYEPWQIKSRWAEIERLSKELTGDFREVE
                     ENFKELYKTISHRHADATLSKGQLLRLTFDALEELKSNDQGKSFYAFWEFLMDDERQQ
                     EFTQMLQQVYDLLDKTDVPYESRQLLHLKYMLHAAGIKLLETNQLLGYKLSRIVVEKE
                     RGNRRKTRDVINQILQQALQQADRNEKKEWVVYVDDKPAVSLPMDRRHGDRPPDNEFL
                     ATPNAQALSIDQLTDLHKLLDDGSIDKQVLLDNVKQLLKKQKQVTLKEVVEKHGCAKG
                     LAELLAYVSLA"
BASE COUNT          450 a          404 c          431 g          301 t
ORIGIN      
        1 tttgaaaagc cagcaaccca atgcccagca ggacgaaaag caggaataga cgcatgtgca
       61 aatgaaagat ttttctgatc aatactgacc gggtaaatgg gtggcggctc ccatccgggg
      121 atggttgata acccgtggat acattcccga ttctggccgg tggttggcag gtcgcagccc
      181 cttattttgt gcccactctg cgcatgaccg ataccttttt tcaataccgc accctgcatc
      241 atttcttgca gcaatcgctg agcctgcgcc tgctgcgcag tggccatgcg gccatgagca
      301 tttccttttt gcacaaagta ttccggcagg caaacgtgct gcaagtgcca ttgagcgaca
      361 tgacgcagaa gctggctgac tacctggctg gcatcggctt cctggaagag ggcgaagaat
      421 tccagacact gaactatatc accagcgatt attttgagcg ggccgacacc tacatcaaac
      481 gctgggccga tgaggagaac aggttcatct tcatcaacat cgatgaaaaa acacatgagc
      541 cctacgtaac gctgacgagg cataccgaga aagtgttcca ggcactggaa ctgcttcgcg
      601 aaaaagattt tgtgggcgcc gaaagcaaac tgctcgacct gtttaccaaa gtgcaggagt
      661 tggtgcagcg taccaacgaa gacccggatg aacgtatcaa agctttgcag gagaagcgca
      721 aacaggtaga ggaagagatc aaactgatca ggcaaacagg cgaagtgccg gtgtacgagc
      781 cctggcagat caaaagccgc tgggccgaaa tagaaagact gagcaaagaa ctcaccggcg
      841 atttccgcga ggtggaagag aacttcaagg aactctacaa aaccatcagc caccgccatg
      901 ccgatgccac gctgagcaag ggccagttgc tgcgcctcac cttcgatgcg ctggaagaac
      961 tgaagagcaa cgaccagggc aaaagtttct atgcgttctg ggagtttttg atggacgacg
     1021 aaaggcaaca ggaattcacc cagatgctgc agcaggtgta cgacctactc gataagacgg
     1081 atgtacccta cgagagccgc cagttgctgc acctcaaata catgctgcat gctgccggca
     1141 tcaaattgct ggagaccaac caactgctgg gatacaaact cagccgcatt gtggtggaaa
     1201 aagaaagagg caaccggcgt aaaacccggg acgtgatcaa ccagatactg caacaggcgt
     1261 tgcagcaggc cgataggaat gagaagaaag aatgggtagt gtatgtggat gacaagcctg
     1321 ccgtaagcct gcccatggac cgccgccatg gtgaccggcc tcccgacaat gaattcctgg
     1381 ccacgcccaa tgcacaagcg ctttccatcg accagctgac tgatctacac aagttgcttg
     1441 atgatggcag catcgacaaa caggtgctgc tggacaacgt gaagcaactg ctgaaaaagc
     1501 agaagcaggt tacactcaag gaagtagtag aaaagcatgg atgtgccaaa ggactcgcgg
     1561 aattgctggc ttatgtgagc ctggcc
//
LOCUS       DATIQF010000258         2451 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_19041, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000258 DATIQF010000000
VERSION     DATIQF010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2451
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19041"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..612
                     /locus_tag="VLL95_04120"
     CDS             <1..612
                     /locus_tag="VLL95_04120"
                     /inference="COORDINATES: protein motif:HMM:NF013246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005254 - chloride channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bestrophin family ion channel"
                     /protein_id="HSR38075.1"
                     /translation="NCSRTLAVKINTMLSPDDFDNRNYLRKLIGLYPLELKMNLQKDS
                     TKFELDDQEHPDLAFDRNAHMPAQISNALHKRTQQLYQQGKLSGEQIIVLNAELQSML
                     DVCGACERIKNTPIPYSYSAFIKKFIAVYVFTLPFGFAFSLGWVSVPIVAFIFYVLAS
                     LELIAEEIEDPFGNDINDLPMDKMAENIRNNVYAIIELPKEIQ"
     gene            complement(625..2169)
                     /locus_tag="VLL95_04125"
     CDS             complement(625..2169)
                     /locus_tag="VLL95_04125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38076.1"
                     /translation="MSHPNIATIGQLKESGYQPKSIKQEVRDNLIRKIKNHEETFPGI
                     LGYEDSVIPDTERALLSRHNILFLGLRGQAKTRMARQMVDLLDEYIPVIAGSDINDDP
                     FHPISKHARDLIAEKGDDTPIEWLHRSQRYGEKLATPDVSVADLIGDIDPIKAANLKL
                     SFADERVLHYGIIPRSNRCIFVINELPDLQARIQVALFNILQEGDIQIRGFKLRLPLD
                     ILFVFTANPEDYTNRGSIVTPLKDRIESQILTHYPKSIETALAITEQEAAVLPEQAEK
                     ISVSDLVKRLIEQISFEARGSEYVDKKSGVSARLTISAMENAYSTAERRAILHDEKQT
                     QVWISDLVGIIPSITGKIELVYEGEQEGPYQVAVNLMEKAIRSLFVQYFPNPDALKKR
                     RNTGKQSQQVKEEDNPYRAVIAWFDAGNKVDLLVDATDREKINLLYQVDGLHALVKKY
                     FNRANEHEMALLMEFVLHGLSSYSLISKRMLEGRVEFKDLMGSMLNLGGGSFDDDDDF
                     SEDDFT"
     gene            complement(2237..>2451)
                     /locus_tag="VLL95_04130"
     CDS             complement(2237..>2451)
                     /locus_tag="VLL95_04130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38077.1"
                     /translation="IFSRCLNLAAQCKKLKIPITTFMIATDPYLQRFVAEFTETNNGK
                     AFFASLDKLGAFVFRDFESGKRKTVY"
BASE COUNT          579 a          627 c          562 g          683 t
ORIGIN      
        1 aactgttcac gcacccttgc tgtgaagatc aacactatgt tgtcgcctga tgattttgac
       61 aaccgcaatt acttacgcaa actgatcggg ttgtatccgc tcgaactgaa gatgaatctg
      121 cagaaagaca gcaccaaatt cgagttagat gaccaggagc atcccgacct ggctttcgac
      181 agaaacgccc acatgccggc tcaaatttcc aatgccctgc acaaacgcac ccaacagctt
      241 taccagcagg gcaaactgag cggagaacag atcattgttc tcaatgcgga attgcaatcc
      301 atgctggatg tatgtggcgc ctgcgaacgc attaaaaaca cgcccattcc ttattcgtac
      361 agtgccttta ttaagaaatt cattgccgtg tatgtattca cactcccttt tggatttgct
      421 ttctcactcg gctgggtctc tgtgccaatc gtggctttta ttttctatgt gctggccagc
      481 ctggaattga ttgctgaaga aattgaggat ccctttggga atgacatcaa cgatttgccc
      541 atggataaaa tggctgaaaa catccggaac aatgtgtacg ccatcattga gctcccgaaa
      601 gaaattcaat gatgcgcctg ccaatcaggt gaaatcgtct tcgctgaaat catcgtcgtc
      661 atcaaaactt ccgccgccaa ggttgagcat actgcccatc aggtctttaa attctaccct
      721 gccctccagc atgcgcttgc tgatgagtga atacgatgag agcccgtgca gtacaaactc
      781 catgagcaat gccatttcat gctcattggc ccggttaaaa tacttcttca ccaaagcatg
      841 caagccatct acctggtaaa gcaggttgat cttttcccga tcggttgcgt ctacaagcag
      901 gtcaactttg ttgcctgcat caaaccaggc aatcactgca cgatatggat tgtcttcttc
      961 ttttacctgt tgcgactgct tgccggtatt cctccttttt ttcaacgcat cagggttggg
     1021 gaaatactga acgaacaatg aacgaatggc tttctccatc aaattcaccg ccacctggta
     1081 aggaccttcc tgctcgcctt cgtacaccag ttctattttg ccggtgatgg aaggaataat
     1141 gcccaccaga tcgctgatcc acacttgtgt ttgcttttca tcatgcagta tggcccttcg
     1201 ctcggcagta ctgtaggcgt tttccatggc cgagatagtg aggcgggccg ataccccgct
     1261 cttcttgtcg acatattcgc tgccccgggc ctcaaatgaa atttgttcga tgaggcgttt
     1321 caccaaatcg ctgacgctga tcttttcggc ctgctccggt agtacggccg cttcctgctc
     1381 ggtaatggcc aacgccgtct caatggattt gggatagtgc gtcagtatct ggctttcaat
     1441 gcggtctttc aatggcgtta caatggagcc tcggttggta taatcttccg ggttggctgt
     1501 gaacacaaac aggatatcca gtggcaaacg caatttgaat ccgcggatct ggatgtcgcc
     1561 ttcctgcaga atattgaaca acgccacctg tatacgtgcc tgcaggtcag gcaattcatt
     1621 gatcacaaat atgcagcggt tgctcctggg tatgatgccg tagtgcaaca ctcgttcatc
     1681 cgcaaaactc aatttcaggt tggccgcttt aatggggtca atgtcgccga tcaggtcggc
     1741 cacacttaca tcaggcgtgg ccagtttctc gccataacgc tggctgcggt gcaaccattc
     1801 aatcggtgtg tcgtccccct tttctgcgat gaggtcacgg gcatgtttgc tgatgggatg
     1861 aaacgggtca tcgttgatgt cgcttccggc aatcacagga atgtattcat ccagcaaatc
     1921 caccatctgg cgtgccatgc gggttttggc ctggccacgc aggcccaaaa acagaatatt
     1981 gtgacggctg agcaaggctc gctctgtatc agggatcacg ctgtcctcat aacccaatat
     2041 gccagggaat gtctcctcgt ggttttttat tttccggatc aggttgtctc ttacctcctg
     2101 cttgatactc ttcggctggt aaccactttc cttcaactgt ccaatggttg ctatattcgg
     2161 atgactcatt tgtatggtaa attcttgtaa gtatttgact caattaattt cagttcgttt
     2221 gtaattatcc agcaggtcag taaaccgttt tccttttgcc actttcaaaa tcacgaaaca
     2281 caaaggcgcc aagtttatcc agcgaagcaa agaatgcctt gccattgttg gtttctgtga
     2341 actcggctac aaagcgctgc aggtaagggt cggtggcaat catgaatgta gtgatcggta
     2401 ttttcagctt cttgcattgc gccgccaaat tgaggcaacg gctgaagatc t
//
LOCUS       DATIQF010000259         8180 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_94890, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000259 DATIQF010000000
VERSION     DATIQF010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8180
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94890"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..593)
                     /locus_tag="VLL95_04135"
     CDS             complement(<1..593)
                     /locus_tag="VLL95_04135"
                     /inference="COORDINATES: protein motif:HMM:NF006667.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex E1 component
                     subunit beta"
                     /protein_id="HSR38078.1"
                     /translation="MARIIAFREALREAMSEEMRRDERVFLMGEEVAEYNGAYKVSQG
                     MLAEFGPKRIIDTPIAELGFAAIAVGAAQNGLRPIVEFMTWNFAVLPMDQILNTASKM
                     MAMSGGQVGCPIVFRGPNGSAGQLGAQHSTAFESYYANIPGIIVISPSNPYDAKGLLK
                     AAIRNDNPVMFMESEVMYGDKGEVPEEEYLVEIGKADV"
     gene            complement(728..1822)
                     /locus_tag="VLL95_04140"
     CDS             complement(728..1822)
                     /locus_tag="VLL95_04140"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HSR38079.1"
                     /translation="MKNIFQASLKWSSVVLAGAMFLASCNKDLEQAKPIVPPPPTATS
                     TIAQLLDDPNFSTLKAAVTRANLMTALADPTASFTVFAPDNAAFTASGIPASAIPTFR
                     PGFLDTLLRYHIIGGERLTAGRITEQFPNMYLQSGFVLQAPSASLPPGYRMPILPSRR
                     TNVAWVNNIPIKAADIQAVNGVVHVPAFIVQPPSQVVAQIIAADTSLTFLLAAVQRAD
                     AGPPPGAPQLLPILSNAAANLTVFAPDNNAFRQTLAALGLPPVIGSINLLPTTTVWGI
                     VAYHAMTVRAFAANLPSGVANLPSLIGVPIQSRVTVTPPAPPTLIELRGNGNNLPTNP
                     PTAFFARVTTGDLNAINGVVHKINAVLLPQ"
     gene            complement(1860..4544)
                     /locus_tag="VLL95_04145"
     CDS             complement(1860..4544)
                     /locus_tag="VLL95_04145"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR38080.1"
                     /translation="MRKVLPLVAVLIMVQVFTIAAIAQSVTIKGTVKDATTKGTISAA
                     SVVVRGSTAGTYTDDNGNFSITVAKLPVTLDVSAVNYAVKSVEVGSAAASLDIELAPS
                     VALGQEVVVSATRTPSRILESPVSIERVGNTAIRTSASPNFYDMLANLKGVDVVASSL
                     TFKTPTTRGFAGSGNARFLQLMDGMDNQAPGLNFAVGSVIGLTELDVDNFELLQGASS
                     ALYGPGGMNGTMLINAKNPFKYQGLSFQIKTGIMHTDGKFRDPSPYYNWAVRWAQKVN
                     DKFAYKIGSELIQAKDWVANDYRNYKRNGSDGSIVAGTRETDPNFDGVNVYGDETTTN
                     LRSVLDAIAAQVPFWKDHVNSLPSNIPVSRTGYREVDIVNPNTKVFKLSGALHYKIKP
                     DLEAVIAGHWGTGNTVYTGAQRYSLREFKIGQYKIELNAKNWFFRAFTTQENSGASHD
                     MTVTTRLLNESWKPSTTWYPEYAFAYMNAKLSGRQDLDAHNIARSVADVGRPAAGSQQ
                     FRDLYNQIIKKPIPQGGLFLDRSDMYWAEAQVNLSNMLDWKFADVLVGGNYRQFVLNS
                     QGTLFMKEAELIRINEMGAYVQLAKDLVKDKLRMTASGRYDKNQNFDGRFTPRVTLLY
                     KAAKDQNIRLSYQTAYRFPTTQQQWIDLNVGYRLMGENKKIWEKYNLIENAPYNPANL
                     NERINYTKTKPESVTSFELGYKALIRSKLLIDAYGYAGTYQNFISRRDAVQFTPAAPQ
                     NPQYYSIVVNAPGKVNTYGWGFSADYLMPRGYKVGLNVSSDVLNNVPTGFRAFFNSPK
                     YRTNLSLGHDGFGKKKIVGFSFAWRWQDAFYWQGDFANGQLPAFHSVDGTINFRVTKI
                     KSLIKVGGSNLLNSYYRTAIANPAIGGLYYVSFAYNVL"
     gene            4697..5626
                     /locus_tag="VLL95_04150"
     CDS             4697..5626
                     /locus_tag="VLL95_04150"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF009251.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HSR38081.1"
                     /translation="MMQLNIPNTTQFYSGKVRDVYTIGQDLLVMVASNRISAFDVILP
                     RPIPFKGQVLNQIAAHMLKATADICPNWLLDVPAPNVSIGRKCVPFKVEMVVRGNLTG
                     HAWRTYSSGLRQLCGVTLPEGMKENDFFPSPIITPTTKADAGHDEDISREDIIAKGIV
                     GETDYAILEKYTLALFERGKAIAARQGLILVDTKYEFGKIGDTIYLMDEIHTPDSSRY
                     FYADGFEERQAAGEKQKQLSKEFVREWLIANNFMGKEGQTVPEMSDEWIETISQRYIE
                     LYEKVVGEKFVPQAWSDAETIAAIESSLHKLGA"
     gene            complement(5692..6732)
                     /locus_tag="VLL95_04155"
     CDS             complement(5692..6732)
                     /locus_tag="VLL95_04155"
                     /inference="COORDINATES: protein motif:HMM:NF001133.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HSR38082.1"
                     /translation="MALLHNRVSNKELKQRLMQESEPRTTISFYKYHHIQNPNGFRDE
                     LWKGLDALKVFGRIYVAKEGINAQVSVPASNFDAFKAYLYSYDWMDGLRLNIAVDDDG
                     KSFWVLKIKVRDKIVADGIDDPSFSMEKLGKYLKANEVNDLLKNPDTVVIDMRNHYEY
                     EVGHFENAIEVPSDTFREQLPMAAEMMQGREDKPIIMYCTGGIRCEKASAYMLHRGFK
                     NVFHIEGGIINYVHQVQQEGLEQKFIGKNFVFDNRLGERVTEDVIAKCHQCGKPADTH
                     TNCVNDACHLLFIQCEECKTKYEGCCSKECQDFIHLPAEQQKEMRKGIDKGANIFNKS
                     RHRLRPRLNAEA"
     gene            6868..7455
                     /locus_tag="VLL95_04160"
     CDS             6868..7455
                     /locus_tag="VLL95_04160"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR38083.1"
                     /translation="MWRNWPSAPQGFLPVLQCACRQVLPLMNLVHTNSFGIQNSEQFA
                     LRSVQIGDVDRIRRLFSDTIMAVCAADYSAEQLAAWASASNDRFRWIEMLSDQYSLVA
                     TFNGVLVGFASLANGHHLDLLYVHKSYLRHGIATQLYLTLEETASHLGQPVLTTHASI
                     TAKPFFEKLGFELLGEQKVSVNGIDLVHFRMQKRI"
     gene            complement(7518..8063)
                     /locus_tag="VLL95_04165"
     CDS             complement(7518..8063)
                     /locus_tag="VLL95_04165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38084.1"
                     /translation="MKFGLHLFCGILGASISVLLVAWPTALTAQHCAYDGFYAIVIQP
                     KQSSNLKMPVFKVVQQYRMDSCAFTKQLDTLRFRTKEEWWAMAQTDSNGHLYRWFFPD
                     LEKRGDFLRSNLMVLFTQSGRYCMVPNGNQYRFEPRKFRLIWKAGDQWKQLDIPDAFV
                     FHLCSTAGTWQRIKPFEVDFK"
BASE COUNT         1993 a         2027 c         2081 g         2079 t
ORIGIN      
        1 acgtcggcct tgcctatttc aaccaggtat tcttcttcgg gtacttctcc cttgtcgcca
       61 tacattactt cactctccat gaacatcacg gggttgtcgt tgcggatggc ggctttcaac
      121 aggcccttgg catcgtaagg attgctgggg ctgatgacga tgatgccggg aatattggcg
      181 taatagcttt cgaatgcagt agagtgctgg gcaccgagct ggccggcact gccgttgggg
      241 ccgcggaata cgatggggca acccacctgt ccgccactca tggccatcat tttggaagcg
      301 gtattcagga tctggtccat gggcagcacc gcaaagttcc aggtcatgaa ttctacgatt
      361 gggcgcaggc cattttgtgc agcacctacg gcaatggcgg caaaacccaa ttctgcaatg
      421 ggcgtatcaa tgatccgctt ggggccaaat tcagccagca taccctggct taccttgtaa
      481 gcaccgttgt attcggctac ttcttcaccc atcaggaaca cccgttcatc gcggcgcatt
      541 tcttcgctca ttgcttcacg aagcgcttct ctgaatgcaa ttattcttgc catgctgttt
      601 acttcaaaaa tttaggaagg caaaagtaaa ggctgggggg caaacggaaa attttgattg
      661 taggggccaa aaaaagcagc cggttcctgg gaaaccggct gccgatgatg gatttctgtt
      721 ggcttggtta ctgaggcagc agaacggcat tgatcttgtg caccacccca tttattgcat
      781 tcaaatcgcc ggtggtcacc ctggcaaaaa atgcggtggg gggattggtc ggaaggttgt
      841 tgccatttcc acgcaattcg ataagggttg gcggtgccgg cggcgttacc gtaaccctcg
      901 attgaatagg aacgccaata aggctgggca ggttggccac acccgaaggc aggttggcag
      961 caaaggctct caccgtcata gcatgatagg ccacgatgcc ccacacagta gtggtgggca
     1021 acaagttaat ggaacctatg acaggaggta atccaagggc tgccagcgtt tgcctgaagg
     1081 cattgttgtc cggggcaaat acggtaaggt tagcggcggc attgctcaga atgggcaaca
     1141 actgcggtgc gcctggagga ggaccagcat cagcacgctg taccgcagcc agcaggaagg
     1201 ttaacgaggt gtcagccgca atgatttgcg ctactacctg gctgggtggc tgcacaataa
     1261 atgcaggaac gtgaaccact ccattcaccg cttgaatatc agccgccttt atggggatat
     1321 tgtttaccca agccacgttg gttcggcggc tgggcaatat gggcatgcga tagccaggag
     1381 gcaacgaagc actgggcgct tgtaatacaa atccgctttg caggtacatg ttggggaact
     1441 gttcggtaat gcggccggcc gttaaacgtt cgcctccaat gatgtggtac ctgagcaggg
     1501 tatcaaggaa acccggacgg aaagtgggaa tagccgaggc cgggatgcca ctggctgtaa
     1561 aagccgcgtt atccggggca aatacggtaa aggaagctgt ggggtcggct aaagccgtca
     1621 tcaggttggc ccgggtaacg gcggccttaa gggtgctgaa attgggatcg tccagcaatt
     1681 gcgcaatggt gctggtggcc gtaggcggtg gtggaacaat tggcttggcc tgttccaggt
     1741 ccttgttaca ggaagccaaa aacatggcgc ctgccaacac aacactgctc cattttagcg
     1801 aggcttggaa tatgtttttc ataaagtatt aatctttttg cgatgaaatc aaaatcaaat
     1861 caaagcacgt tgtaggcgaa gcttacatag tacagtcctc caatagccgg gttggctatg
     1921 gcggtgcgat agtaagagtt cagcaggtta gacccgccca ctttgatgag ggacttgatt
     1981 ttggttaccc tgaagttgat ggtgccatct acagaatgga aggcgggcag ttgaccattg
     2041 gcaaaatcgc cctgccagta gaaagcatcc tgccagcgcc aggcaaaact gaagcccacg
     2101 atctttttct tgccaaaacc atcatgcccc aggctgaggt tggttctata cttgggtgaa
     2161 ttgaagaaag cccggaaacc ggtgggcaca ttgttcaaca catcgctgct cacgttcaat
     2221 cccaccttgt agccgcgagg catcaggtag tcggcactga agccccagcc ataagtattc
     2281 actttgcccg gtgcattcac cactatgctg taatactgcg gattctgggg tgccgcagga
     2341 gtaaactgca ccgcatcgcg acgagaaatg aaattctggt aagtacctgc ataaccatag
     2401 gcatctatca gcaatttgct cctgatgagt gccttataac ccaattcgaa tgaagtaaca
     2461 gactcaggtt tggtcttggt ataattgatc cgctcattca ggttggctgg attgtagggg
     2521 gcattttcga tgaggttgta tttctcccag atcttcttgt tttcacccat caaacgatag
     2581 ccaacattca ggtcgatcca ttgctgctgc gtggtgggga aacgataagc tgtctggtac
     2641 gacaagcgaa tgttttgatc ttttgccgcc ttgtacaaca gggttaccct tggggtgaag
     2701 cggccatcga aattctggtt cttgtcataa cgaccggagg cagtcatccg aagtttgtct
     2761 tttaccaggt cttttgccaa ttgaacatag gcgcccattt cattgatcct gatcaattca
     2821 gcttctttca tgaacaatgt tccctggcta ttcaatacaa actgacggta gttaccaccc
     2881 accagcacat ccgcaaattt ccaatcgagc atattgctca ggttaacctg tgcttcggcc
     2941 caatacatat cgctgcggtc gaggaacaaa ccaccctggg gaattggttt tttgatgatc
     3001 tggttataca aatccctgaa ctgctggctg cctgctgccg ggcggcctac atcggctacg
     3061 gagcgggcaa tgttgtgggc atccaaatcc tggcggccgg acaatttggc gttcatgtag
     3121 gcgaaggcat attcaggata ccaggtagtg ctgggcttcc atgattcatt cagcaaacgg
     3181 gtggttactg tcatatcatg ggaggcacca ctgttttcct gtgtggtaaa ggcgcggaag
     3241 aaccagttct tcgcgttcag ctcaatcttg tactggccaa tcttgaattc gcgaagtgaa
     3301 tagcgctgag ccccggtata cacggtgttg ccagtgcccc aatggccggc gatgaccgct
     3361 tcgagatcgg gtttgatttt ataatgcaat gcgccggaga gtttgaacac cttggtattg
     3421 gggttcacaa tatccacttc acggtaccct gtgcggctta ccgggatatt gcttggaaga
     3481 ctgttcacat gatctttcca gaaaggcacc tgggcagcaa tggcatccag tacagaacgc
     3541 aggttggtag tggtttcatc accgtaaacg ttgacaccat caaagttggg gtcggtttca
     3601 cgggtaccgg ccacgatgct tccatccgat ccgttgcgtt tgtaattgcg gtaatcgttg
     3661 gctacccaat ccttggcttg aatgagctcg gagccaatct tgtaggcaaa cttgtcattc
     3721 actttctgcg cccagcgaac agcccagttg tagtagggag aagggtcgcg gaatttacca
     3781 tcggtatgca tgataccggt tttgatctgg aacgacaggc cctggtattt gaaggggttc
     3841 ttggcattga tgagcatggt accgttcatg ccaccggggc catacagtgc ggaggaggcg
     3901 ccctgcaaca attcaaaatt gtctacatcc agctcggtga ggccaatcac gctgcccacg
     3961 gcaaagttga gaccgggggc ctggttgtcc atgccatcca tcagctgcag gaaacgggcg
     4021 ttgccactgc ccgcaaaacc acgggtggta ggcgttttga aagtgagaga actggctact
     4081 acatccacac ccttcaggtt ggccaacata tcataaaaat tgggggatgc tgaagtacgg
     4141 atggctgtgt tgcccaccct ttcaatactt accggcgatt ccaggatccg cgaaggcgtc
     4201 cgggtggcac tcaccaccac ttcctggcca agcgccacac tgggtgcaag ctcaatgtcg
     4261 agtgaggcgg ctgcgcttcc tacttctaca gacttcacag cgtagttcac tgccgaaaca
     4321 tccagtgtta ccggcagttt tgcaaccgta attgaaaaat tcccgttgtc atctgtgtag
     4381 gtgcctgctg ttgaccctct gacaacaact gatgcggctg aaatcgttcc tttcgtagtg
     4441 gcgtctttaa cggtaccctt aatggtaacc gactgagcaa tggcggcaat cgtaaaaacc
     4501 tgcaccatga tcagcaccgc cacaagtggt agcacttttc tcataagcga attgtttaac
     4561 taagcaaata tggactgttt tctacatcta tgttaaacat agtttataac taaaggtttt
     4621 caatgcacag tttatacaga tttctgaata aataaccact gcttgtcaaa ttatcgaaaa
     4681 ctgttccttt gcagttatga tgcaattgaa cattcccaat accacccaat tttatagcgg
     4741 aaaggttcgc gatgtataca ccattggcca ggatttgctg gtgatggtag cgagcaaccg
     4801 gatctccgca ttcgatgtca tcctgccaag acctatcccc ttcaaaggac aggtgctcaa
     4861 ccagatagcc gcccacatgc tgaaagccac ggccgatatc tgccccaatt ggctgctgga
     4921 tgtgccggcg cccaatgtga gcattggccg caaatgcgtg cccttcaaag tggaaatggt
     4981 agtgagaggc aacctcaccg gtcacgcctg gcgaacctac tcttcgggtc tgcgccaatt
     5041 gtgcggcgtt accctgcccg aaggcatgaa ggaaaatgat ttcttcccct cacctatcat
     5101 aacacctacc accaaagccg atgccggcca cgatgaagac atcagccgcg aagacattat
     5161 tgccaaaggc attgtaggcg aaaccgacta tgccattttg gaaaaataca cgctggcttt
     5221 gtttgaacgc ggcaaagcca ttgcagcccg ccaggggttg atactggtgg acaccaagta
     5281 cgaattcggg aaaataggcg acaccattta cctcatggat gaaattcata cgccggattc
     5341 atcgaggtat ttttatgccg atggatttga ggaaagacaa gccgctggtg aaaaacaaaa
     5401 gcagctcagc aaggagtttg tgcgtgaatg gctgatcgcc aacaacttca tgggcaaaga
     5461 agggcaaacc gttcccgaaa tgagcgacga gtggattgaa accatcagcc agcgctacat
     5521 tgaattgtac gaaaaagtag tgggtgaaaa atttgtaccg caggcctgga gcgatgcaga
     5581 aaccattgcc gctattgaat catctctaca taaacttggc gcttaactac ggggcattca
     5641 ccgggtaata aaaaaagcag cgatcatttt attgtcgctg cttttttttg gctatgcctc
     5701 agcattcagc ctgggacgaa gccgatggcg gctcttgttg aaaatattgg cgcccttgtc
     5761 gatgcctttg cgcatttctt tttgctgctc tgccggcagg tgaatgaaat cctggcattc
     5821 cttgctgcag catccttcgt atttggtttt gcattcttcg cattgaatga atagcaggtg
     5881 gcaggcatca ttcacacagt tggtatgcgt gtcggcgggt tttccgcact ggtggcattt
     5941 ggcgatcaca tcttcggtta ccctttcacc aaggcgattg tcgaatacaa aattcttccc
     6001 gatgaatttt tgttccagcc cttcctgctg cacctggtgt acgtagttga tgatgccgcc
     6061 ttcaatgtga aacacatttt tgaaaccgcg gtgcagcatg taggcgctgg ctttctcgca
     6121 gcggatacca ccggtacaat acatgatgat aggcttgtct tcgcgcccct gcatcatttc
     6181 agcagccatg ggcaattgtt cccggaaggt gtcgctgggc acttcaatgg cgttttcaaa
     6241 atgacctact tcgtattcgt aatgattgcg catgtctatg accacagtgt ccggattctt
     6301 cagcaggtca ttcacttcat ttgccttcag gtatttgccc agcttttcca tgctgaagct
     6361 gggatcatca atgccatcag caacaatttt atcccgcacc tttattttca gcacccaaaa
     6421 gcttttgccg tcatcatcca cggcaatatt caggcgcagc ccatccatcc aatcatagct
     6481 gtagaggtat gccttgaatg cgtcgaagtt ggacgccggc acgcttacct gggcattgat
     6541 cccctccttg gccacataaa tgcggccgaa tactttaagg gcatcaaggc ctttccagag
     6601 ttcgtctctg aagccatttg gattctgaat gtgatgatac ttgtaaaaac tgatggttgt
     6661 acgcggctcg ctctcttgca taagccgctg cttgagttcc ttgttggaaa ccctgttgtg
     6721 gagtaatgcc atgtcaataa aattttaagg ccccaacgag tcggggtgtt gaatccaacg
     6781 ccagttacag gctggccaaa atttttggaa acggtgcaaa gataggcaga gggcaacctt
     6841 gcaaatgcta aaacccggaa tgtgggcatg tggagaaact ggccctcggc tccacagggc
     6901 tttttgccag ttttacaatg cgcctgccgg caggtgctgc cactaatgaa ccttgtacat
     6961 accaatagct ttggcatcca gaacagcgaa cagttcgccc tgcgcagcgt tcagattggt
     7021 gatgtagaca ggatccgccg gctgttttcg gataccatta tggctgtgtg tgccgccgat
     7081 tattctgcgg agcaactggc ggcctgggct tcggccagca acgaccggtt tcgatggatt
     7141 gaaatgcttt cggatcagta ctcgctggta gccaccttca acggcgtatt ggtaggcttt
     7201 gcctccttgg ccaacggcca ccacctcgac ctcctttacg tacacaaatc gtacctgcgg
     7261 cacggtatcg ccacccaatt gtacctcacc ctggaagaaa cagccagcca cctgggccag
     7321 ccagtgctta ccacccatgc cagcatcact gccaagcctt tctttgaaaa gcttggcttt
     7381 gaattgttag gcgaacaaaa ggtttcggtc aatgggatag acttggtgca tttcagaatg
     7441 cagaagagga tttgaaatga ccaggtatgc ttcttctgcc atccggcctt cattcatgac
     7501 attgcatcca acatccatta tttgaaatct acttcaaagg gcttgatcct ttgccaggtg
     7561 ccggctgtgg agcacaagtg aaacacaaaa gcatcaggaa tatccagttg tttccattga
     7621 tcccctgctt tccaaattaa tctgaatttt cgcggttcaa accgatattg attgccgttt
     7681 ggaaccatgc agtaacgccc cgattgagtg aacaacacca ttaaattgct tcttagaaaa
     7741 tcgcctcttt tttcaaggtc aggaaaaaac caacgataca ggtgcccgtt gctgtcagtt
     7801 tgcgccatgg cccaccactc ttcctttgtg cgaaaacgca atgtatccag ttgtttggta
     7861 aatgcacaac tgtccatgcg gtattgttgc accaccttaa acacgggcat tttcaggttt
     7921 gaagattgct ttggctgaat gacgattgcg tagaacccat cgtatgcgca atgctgcgca
     7981 gtaagtgccg ttggccatgc tacgagtaaa acactgatgg aagctcccaa tatgccgcaa
     8041 aacaaatgca acccaaattt catgatgaaa agtaagtttt gccttttgaa ttggtaatac
     8101 caactgtagg gtatttattg cttccggttg cggtagtttt acaaatgaaa ataagttgag
     8161 tgcgaatcat cacccgaacg
//
LOCUS       DATIQF010000260         4079 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_277402,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000260 DATIQF010000000
VERSION     DATIQF010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4079
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277402"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..352
                     /locus_tag="VLL95_04170"
     CDS             <1..352
                     /locus_tag="VLL95_04170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38085.1"
                     /translation="ESIKRNLKGIPNIAAIGSGGNINKIFSLSKRKEGKPLSLQTLRD
                     YFKEFNSFSTYERMINYNLREDRADVIVHALLIYINVMRWADADMIYVPKIGLADGLI
                     RHLYDSLQAEVYPV"
     gene            426..1241
                     /gene="panB"
                     /locus_tag="VLL95_04175"
     CDS             426..1241
                     /gene="panB"
                     /locus_tag="VLL95_04175"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR00222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HSR38086.1"
                     /translation="MSTYKEVKKVTTNTLQKMKADGEKISMLTAYDFSFARLFDQAGI
                     DVILVGDSASNVMAGHETTLPLTLDQMIYHAQCVIRGVNRSLVVVDMPFGTYQSNSDI
                     ALASAIRIMKETGAHSLKMEGGAEILDSIRKVVDAGIPVMGHLGLTPQSIYKFGTYTV
                     RAKEEGEAQKLREDALLLQQAGCFAIVLEKIPAALAEEVSHSLHIPTIGIGAGVQCDG
                     QVLVMHDMLGINTEFKPRFLRKYLNLHEQITTAVQQYISDVKDRDFPNEQESY"
     gene            1316..2578
                     /locus_tag="VLL95_04180"
     CDS             1316..2578
                     /locus_tag="VLL95_04180"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HSR38087.1"
                     /translation="MLNRSISKWEMVLLIINGVIGAGIFGLPAKAYKDAGLYSIPALL
                     ICAAVVFVIVFCFAEVSSRFSKTGGPYVYASVLGRWPAFLTGWLLLLTRFITFAALIN
                     LLVTYLSVFSPWFVTDVGRPATIIGATALLTWFNYVGVHHSTRINNVLTVAKLAALLT
                     FVVVGCFFIDGTRFQANAFPGFSSFSSTILLLVFAFGGFESVLVNTGEVKDPEKNLPF
                     ALLTGTVLIATFYLLILIVSIGTLPGLAQSEKPLAEAAAMMMGRWGALFIAVGATCSI
                     IGTLNAIMLAGSRLPYAFSEEGQFPSWFSFVHPRFKTPTRSLVFYSLVTCVISLSYGF
                     LSAASISAITRVMIYGVVCLTLIQLRKAPGVQKSGYQIRYGIPVAIAGMLICAWLISS
                     AKLVELRDIAIAIAVGGAIYFAVRLKQK"
     gene            complement(2629..3081)
                     /locus_tag="VLL95_04185"
     CDS             complement(2629..3081)
                     /locus_tag="VLL95_04185"
                     /inference="COORDINATES: protein motif:HMM:NF012534.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein"
                     /protein_id="HSR38088.1"
                     /translation="MAKSQQSWQKNEREKKKQKERQEKAERKAERKQSGGGKSLNDMM
                     AYIDEFGNITDTPPDPSKRTEVKLEDIVIGVPKATEADGAGAPRTGVVTFFNSGKGFG
                     FIKDQISGESVFVHINACADPIEENSKVQFEMEKSPRGWQAVNVSLVK"
     gene            3259..3663
                     /locus_tag="VLL95_04190"
     CDS             3259..3663
                     /locus_tag="VLL95_04190"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSR38089.1"
                     /translation="MTIDHIAIYTHRLEELRAFYEKHFGATSNAKYRNPATGFESYFL
                     SFPSGARLELMQKPGIPANANDTVMAQHTGLIHMAFGVSSPEEVDEKARLFQQAGLSI
                     LRGPRLTGDGYYEFEMLDPDGNRIEVTTTPHR"
     gene            3671..>4079
                     /locus_tag="VLL95_04195"
     CDS             3671..>4079
                     /locus_tag="VLL95_04195"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR38090.1"
                     /translation="MQPPFSLEIKLVHSQHMEALLQYLHALGPQSQQQFAPHPFTEAA
                     IWNFYQWQHQHLGYAGFMGNEMVAYFIMKRSFLEHDKERLEGYGIKLHPFHDFTLAPS
                     VADNWQGKGVAGLMMRHVLADARERGAKRLLLWD"
BASE COUNT          979 a         1102 c          949 g         1049 t
ORIGIN      
        1 agaatccatc aaaagaaacc tgaaaggcat acccaatatc gcagccattg gcagtggcgg
       61 caacatcaac aagatcttca gcttatcaaa gcgaaaggaa ggcaaacctt tgtcgctgca
      121 aaccctgcgt gattatttca aggaattcaa ttcgttttcc acctacgaac gaatgatcaa
      181 ctacaatctt cgcgaagacc gtgcagatgt gatcgtacat gccctgctga tttacatcaa
      241 cgtgatgcgc tgggctgatg ccgacatgat ctacgtgccc aagattggcc tggccgatgg
      301 actgatccgc cacctctacg attcattgca ggcagaagtc taccctgtct aagtcatccc
      361 tttcgccgct ttttaccatt ccggaattga atgcattatc ttgccttcca atcaaaggca
      421 aggctatgag cacttataaa gaagtgaaga aggtgactac caatacgctg caaaaaatga
      481 aggcggatgg agaaaaaata tccatgctca ctgcctacga tttttccttt gcccgattgt
      541 ttgaccaggc aggtatcgat gtgatattgg tgggcgatag cgccagtaat gtaatggcgg
      601 ggcatgagac aacactgcca ctcaccctgg atcaaatgat ctaccatgca cagtgcgtga
      661 tccgtggtgt aaaccgcagc ctggtggtgg tagacatgcc ttttggcacc taccaaagca
      721 acagcgatat cgcattggcc agcgccatcc gcatcatgaa agaaacaggt gctcacagcc
      781 tcaaaatgga agggggggct gaaatactcg acagcatccg aaaagtggtg gacgccggca
      841 taccggtgat ggggcacctg ggccttactc ctcagagcat atacaaattc ggcacctata
      901 cggtgagagc caaagaagaa ggtgaggcgc aaaaacttcg tgaagatgct ttgctgctgc
      961 aacaggccgg atgctttgcc attgtgctcg aaaaaattcc cgctgcactg gcggaggaag
     1021 tcagccattc gctccacatt cccaccattg gcataggcgc cggtgtgcag tgcgacggac
     1081 aggtgctggt gatgcacgac atgcttggca tcaacaccga attcaaaccc cgttttcttc
     1141 gcaagtacct caacctgcat gaacaaatta caactgcagt acaacaatac atttcggacg
     1201 ttaaagaccg ggatttcccc aatgagcaag agtcctattg acaaacaaat caattcgccc
     1261 tgccggtatt ttaaaaaaaa cttcttcgca taacaacaat ccatatcttt tgcccatgct
     1321 caaccgaagc atcagcaaat gggaaatggt attactcatc atcaacggag taataggtgc
     1381 cggcattttt ggattgcccg ctaaagcata caaagacgca ggtttataca gcatccccgc
     1441 actgctcatt tgtgcagcag tagtatttgt aatcgttttt tgttttgcag aagtatccag
     1501 tcgcttcagc aagaccggcg gcccgtatgt gtacgcttcc gtgctgggac gctggccggc
     1561 ttttctcacc ggctggctgt tgctgctcac ccgcttcata acatttgcag cgcttatcaa
     1621 cctgctggtt acctacttat ccgttttctc tccatggttt gttaccgatg tcggcagacc
     1681 ggctaccatc attggggcta cagccttgct cacctggttc aattatgtgg gcgtgcacca
     1741 ctccacccgc atcaacaatg tgctgaccgt ggccaagctg gctgccctgc tcacctttgt
     1801 ggtagtcggt tgttttttta ttgatgggac ccggtttcag gcaaacgctt ttccgggctt
     1861 ttcttccttc agctccacca tcctcttgct ggtttttgcc tttggtggtt ttgaatccgt
     1921 tttggtaaat accggcgaag taaaagaccc cgaaaaaaac ctcccctttg ccctgctcac
     1981 aggcactgtg ctcattgcca ctttttacct gctcatactg atcgtgagca ttggtacgct
     2041 gccgggactg gcccagtctg aaaaacccct ggcagaagca gccgccatga tgatgggccg
     2101 atggggcgct ttgttcatag cggtgggcgc tacctgttcc atcatcggca cacttaacgc
     2161 cattatgctg gcaggttccc gtttgcccta tgctttcagc gaagaaggac aattccccag
     2221 ctggttttca ttcgtgcatc cccgctttaa aacccccacc cgctctcttg ttttttacag
     2281 cctggtcacc tgcgtcattt cattatccta tgggttcctt tcggccgcaa gcattagcgc
     2341 tataacccgg gtgatgatct atggggtggt ttgccttaca ctcatccaat tgcgcaaggc
     2401 acccggcgta caaaaaagcg gttaccaaat caggtatggc ataccggtgg ccattgcagg
     2461 catgctcatt tgcgcatggc ttatcagcag tgccaaactg gttgaactga gagatattgc
     2521 catcgcgata gctgtgggtg gcgccatcta ctttgcagta cggctaaaac aaaaatgaat
     2581 gcaccttgcg atgcattcat ttcagaatat tcaatccaaa agagttgttt acttcaccaa
     2641 cgaaacgttc acagcctgcc aacctcttgg agacttttcc atttcaaact gaaccttgct
     2701 gttttcttca atgggatctg cacaggcatt gatatgcacg aatacactct cgccactgat
     2761 ctggtctttg ataaatccaa aacccttgcc gctgttgaaa aaagtgacca cccctgttct
     2821 cggggcacca gcgccatctg cttcggtagc tttcggcaca ccaattacga tgtcttccag
     2881 tttcacttca gttcttttcg aaggatcggg aggcgtatcg gtaatattac caaactcgtc
     2941 gatgtaagcc atcatgtcgt tgaggctttt tccgccgcca gattgcttgc gttcagcctt
     3001 gcgctccgcc ttttcttgtc tttccttctg cttctttttt tctcgttcgt ttttctgcca
     3061 ggattgttgc gattttgcca tatttaaaac agtacaagat caggcttttt atgagacagc
     3121 acctgctttc tccgaggtag cccgatgcag tgaaggtagc tttttcccgc ccgccggctt
     3181 gttaatcttt ccactcatcc gctgtcccgc attgcccgag cggacatttg cgctactttt
     3241 ctgccaacgt ttcggaccat gaccattgac cacattgcga tttacaccca ccgcctggag
     3301 gaactgcgtg ccttttatga aaagcacttt ggcgccacca gcaatgccaa ataccggaac
     3361 cctgccacgg gtttcgaaag ctacttcctg agttttcctt caggtgccag gctggaactg
     3421 atgcagaaac cgggcattcc tgccaacgcc aatgacacgg tgatggcaca gcataccggc
     3481 ctcattcaca tggcgtttgg cgtctcttct cccgaagaag tggatgaaaa ggcaagactc
     3541 tttcagcagg caggcctcag cattttgaga ggaccccgcc tcaccggcga tggctattac
     3601 gaattcgaaa tgctcgaccc cgatggcaac cgcattgaag taaccaccac gccccaccga
     3661 tgacctgaac atgcagccac cattttcatt agagatcaaa ctggtacaca gccaacatat
     3721 ggaggccctg ctgcaatacc tgcatgccct gggcccgcag tctcaacaac agtttgcgcc
     3781 acatcccttt acggaggctg ccatttggaa tttctaccaa tggcaacatc aacacctggg
     3841 ttacgctggt ttcatgggca atgaaatggt agcctacttt atcatgaagc gcagctttct
     3901 tgaacatgac aaagagcggc tggaaggcta tgggatcaaa ctccatccct tccatgattt
     3961 tacgctggcg ccttcggtag ccgacaactg gcagggaaaa ggagtggcgg gattgatgat
     4021 gcgccatgtg ttggcagacg ccagggagcg gggagccaaa cgattgttgc tgtgggacg
//
LOCUS       DATIQF010000261         3185 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_64535, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000261 DATIQF010000000
VERSION     DATIQF010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3185
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64535"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            216..1469
                     /locus_tag="VLL95_04200"
     CDS             216..1469
                     /locus_tag="VLL95_04200"
                     /inference="COORDINATES: protein motif:HMM:NF001813.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HSR38091.1"
                     /translation="MTKIFATLITIGDELLIGQVVDTNSAWMAQALNEAGILVKQRIS
                     VGDNADDIIHALDEAGNQSSIILMTGGLGPTADDITKPVLCQYFDGEMVVDEGALENV
                     RSIFHRLKRPLIERNLKQAEVPSTCTVILNKRGTAPGMWFEKNGKVFVSMPGVPHEMK
                     GMMTDYVLPALQSHFQTPYIVHRTLLTAGVGESFLADMIQQWEEQLPPHMKLAYLPNY
                     GMVRLRITAIGGDAVSLASEVDTQFEQLKALVKDHLVTDRDESMEMVVGKLLKKAGKT
                     LGTAESCTGGYIAHLITTHAGSSDYFVGSVVSYDNKVKEGLLGVMPETLETHGAVSEA
                     AVRQMASGALARLGTDYAIAVSGIMGPGGGSDEKPVGTVWVAAASKHEVLVQQMHFRF
                     DRRRNIELTATNALNLLRKLILSET"
     gene            1624..2991
                     /locus_tag="VLL95_04205"
     CDS             1624..2991
                     /locus_tag="VLL95_04205"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoamide acetyltransferase family
                     protein"
                     /protein_id="HSR38092.1"
                     /translation="MSVVDLVLPKLGESIMEATILKWLKKPGDKVAQDEAVLEIATDK
                     VDSEVPSTAAGVITEVLFPENAVVPIGSVIARIQTEGGAAVAAPAAAASTAPVAAPAT
                     APAAPVVEEVPYQPTTQPEAMRPAAAVQAGSPRFYSPLVLKIAQEEGISMAELETIPG
                     TGMEGRVSKKDMMEYLQHRGKGVVPQPAAQPTAAPSSVAMTVQPAKAPEAVSQSPVTY
                     SGNVEIVEMDRMRKVIAKHMVDSKATSAHVTSFAECDVTNLVLWRDKVKKEFEKREGT
                     KITFTPLFIEAIVKCIKKYPWLNSSVDGDKIIVKKDINLGMATALPSGNLIVPVIKGA
                     DQLNLVGLAKQVNNLADAARNGKLKPDDTMGGTFTMTNVGSFGSIMGTPIINQPQVAI
                     MAVGAIKKRPVVIETAQGDSIAIRHMMYISLSYDHRIIDGALGSTFLNAVARELEAFD
                     INRNF"
BASE COUNT          816 a          775 c          877 g          717 t
ORIGIN      
        1 tgaggcagcg attgggcatt caaccacgat gaggaaaaaa gaaggctggc ggtggctaac
       61 agcagcagta tcgatcgggt cattttgttt ttcatttcag gtgcgaatta actcatttgc
      121 ctgcacaatt gtgctgatga cagtgatagt gcccacccgg ttaacatttt ccaccccgta
      181 ctgttacttt agcggttcaa tcattcattc tcctcatgac gaaaattttt gccaccctca
      241 tcacaatcgg cgatgaattg ctgataggcc aggtagtgga caccaacagt gcctggatgg
      301 cgcaggccct gaacgaggcg ggcatactgg taaagcaacg catcagcgta ggcgataatg
      361 ccgatgacat catccatgca ttggatgaag cgggtaatca atcttccatc atattgatga
      421 ccggcggatt gggacccact gccgatgaca ttaccaagcc ggtattgtgc caatattttg
      481 atggcgaaat ggtggtagat gaaggtgccc ttgaaaatgt tcgatccatt tttcatcgac
      541 tgaagcgtcc cctgattgag cgaaacctga agcaggcgga agtgccctcc acctgtaccg
      601 ttattctgaa caaaagaggt acagctcctg gcatgtggtt cgaaaagaat ggaaaggtat
      661 ttgtgagtat gcccggtgtg ccccacgaaa tgaagggcat gatgactgat tacgtgttgc
      721 ccgctttgca gtcccatttt caaacgccat acatagtgca tcgtacgttg cttactgccg
      781 gtgtgggcga aagttttttg gccgacatga tacagcagtg ggaagaacaa cttccacctc
      841 atatgaaact ggcctacctg cccaactatg ggatggttcg gttgcgcatt actgccattg
      901 gcggtgatgc cgtttcattg gcgtcagagg tggacacaca gtttgaacaa ctgaaagcgc
      961 tggtaaaaga tcacctggta accgaccggg atgagtcgat ggaaatggtg gtgggaaagc
     1021 tgctgaaaaa ggcgggcaaa accctgggca ctgccgagag ttgcacaggc gggtacatcg
     1081 cccatctcat taccacccat gcagggtcct cagactattt tgtaggatcg gtggtgagct
     1141 acgacaacaa ggtgaaagaa ggactgctgg gcgtaatgcc tgaaacgctg gagacacatg
     1201 gtgcagtaag tgaagctgct gtgcggcaaa tggcgtcggg cgcattggca aggttgggaa
     1261 cagactatgc catcgccgta agtggcatca tgggacccgg cggcgggagc gatgaaaagc
     1321 ctgtgggaac cgtttgggtg gctgcggcaa gcaaacacga ggtccttgtt cagcaaatgc
     1381 atttccgttt cgaccgccgc cgcaatattg aactcactgc aacaaatgca ttgaacctgt
     1441 tgagaaaact cattctctca gagacttagt ttgatcaatg ccatggttcc aatcgcattg
     1501 ttgaatgtca cctaaacttt gcactgcggc atcagccagg gcgggttccg gcagccagcc
     1561 ttggggtcat ttaccttact tttgccgggt tcctttgaaa atagaagctg taaaacgatt
     1621 gttatgtctg tagttgatct ggtattaccg aagttgggcg aaagcattat ggaagccacc
     1681 attctcaaat ggctgaaaaa gccgggcgac aaagtggcgc aggatgaagc cgtgttggaa
     1741 atagccaccg acaaggtgga cagtgaagtg ccgtctacgg cggcaggagt gatcaccgaa
     1801 gtactttttc ctgaaaatgc agtggttcca attggctctg ttattgcacg cattcaaacc
     1861 gaaggtggag cggcagtggc tgctcctgct gctgcggcat caacagcccc tgttgctgca
     1921 cccgcaactg ctcctgcggc gcctgtggta gaggaagtgc cttaccaacc caccacgcaa
     1981 cccgaagcca tgcgcccggc agctgccgtg caggcgggaa gcccccggtt ttattctcct
     2041 ttagtattga aaatagcgca ggaagaaggc atcagcatgg ccgaactgga aaccataccc
     2101 ggcaccggaa tggaaggtcg tgtgagcaag aaggacatga tggagtacct gcagcatcgt
     2161 ggcaagggcg tggttccaca gccggcagcc cagccaacag ccgctccttc atcggtggcc
     2221 atgaccgtgc aacccgccaa agcgccggaa gcagtttcac agtctcctgt aacatacagc
     2281 ggcaatgtgg agattgtgga aatggaccgt atgcgcaagg tgattgccaa gcacatggtg
     2341 gacagcaaag ccaccagtgc gcatgtcacc agttttgcgg aatgcgatgt aaccaacttg
     2401 gtgttgtgga gagacaaagt gaagaaggag tttgaaaaga gagaaggcac caagatcacg
     2461 tttacgcccc tgttcattga agccattgta aaatgcatca agaagtatcc ctggctcaat
     2521 agcagtgtgg atggcgacaa gatcattgta aaaaaagaca tcaacctcgg catggctacg
     2581 gcattgccca gtggcaattt gatcgtaccc gtgatcaaag gggcggatca actcaacctg
     2641 gtaggcctgg ccaaacaggt gaacaacctg gccgatgcgg cccgcaacgg caagttgaag
     2701 ccggatgata ccatgggggg cactttcaca atgacgaacg tgggaagttt cggcagcatc
     2761 atgggtacgc ccatcatcaa ccagccgcag gtggccatca tggcagtggg cgccatcaaa
     2821 aagcgccccg tggtgattga aaccgcacag ggcgacagca ttgccatcag gcatatgatg
     2881 tacatcagcc tgagctacga tcatcgcatc attgatggcg cattgggcag caccttcctc
     2941 aacgcggtgg cccgcgaact tgaggcgttt gatatcaatc gcaatttctg acggatcgtt
     3001 gaccggacca tacaaacagg cgctgttgga aaacggcgcc tgttctattt tggcaacttc
     3061 ttcatgccag gcaccggttg tccaactttt gcactttcct atccacacat agtttcctgt
     3121 tttgtggcaa ttcgataatt taaggtggca atcattgcct gtattcacca aagggaatag
     3181 ctatg
//
LOCUS       DATIQF010000262         1976 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_125661,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000262 DATIQF010000000
VERSION     DATIQF010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1976
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125661"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..807)
                     /locus_tag="VLL95_04210"
     CDS             complement(<1..807)
                     /locus_tag="VLL95_04210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38093.1"
                     /translation="MNRIIRFLYFSNLLISFAAVALGAETLWLLEIRLDETWPQLIFL
                     GLSTLGFYTLHDYYTKAGNKPEKGLYPKVVFWQKHGKYLVLPLPLAAIGMAVIALRSF
                     RIHELWVIALISIFTLLYTFPLLPFRHLRRWKNHPISKILVLALVWTAATTLLVSDKV
                     LSANFLPHIIARFVFLLMLCIPFDTRDAIFDRQKMQQTLLDWPGIANLQKLIILLPAL
                     AMLALWLGNVQLSPVLLAAYMVHFAITSWLCHYTLKHPLKFDLYWLLDGQM"
     gene            complement(812..1249)
                     /locus_tag="VLL95_04215"
     CDS             complement(812..1249)
                     /locus_tag="VLL95_04215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38094.1"
                     /translation="MTVFCFGLMVASGCAKDKFTTRPQLEFKEVADYTVARGGLIKFT
                     LQVTDKEGDLTDSIFIATKTTRCTASNRQLKYLMPPFPITANSKAEIEITFVNGQFVP
                     GYVALPGPACGRPDTTTFYFWIRDKAKNVSDTVQTDKPIIILN"
     gene            1300..>1976
                     /locus_tag="VLL95_04220"
     CDS             1300..>1976
                     /locus_tag="VLL95_04220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38095.1"
                     /translation="MNLYSKAKIAEQIFNVQPENFVALAREIHQGQLHANPVFSQYRQ
                     ATGRAIQPVDGLQDFSFLPISFFKTHEVKCFDQGPAIIFTSSGTTGMVPSRHFVKDLD
                     WYEKSFMASFSFAYGDPAQLAWLCLLPAYLEREGSSLVYMANAFVHASQYRESGFFLK
                     ADDKLLQALENLQKQKAPAVLLGVTFALLDFAEAHAGLDLNGIIIMETGGMKGRRQEM
                     IRTEVHE"
BASE COUNT          551 a          442 c          498 g          485 t
ORIGIN      
        1 catttggccg tcgagcagcc aatacaaatc gaatttcaag gggtgtttca aggtataatg
       61 gcaaagccag ctggtgatgg caaaatgaac catgtatgcg gccagcaaaa caggcgacag
      121 ctgtacattt cccagccata aagcaagcat ggccaaagcc ggcagcagga taatcagttt
      181 ttgcaggttg gcgatacccg gccagtcgag caaggtttgc tgcatttttt gccggtcaaa
      241 aatggcatcc ctggtgtcga agggaatgca gagcatgagt aagaatacaa acctcgcaat
      301 gatatgaggc agaaagttgg cggacagtac tttatctgaa accagcaggg tagtggcggc
      361 agtccaaacc agcgccagca ccaggatctt tgaaatggga tggttcttcc atcgacgcaa
      421 atgccgaaag ggaagcaatg ggaaagtgta gagaagggtg aaaatgctga tgagggcaat
      481 tacccaaagc tcatgaatac ggaatgaccg gagggcaata acggccattc caatggctgc
      541 caaaggcaaa ggcagcacca ggtatttgcc gtgcttttgc caaaacacca ctttcgggta
      601 caaacctttc tcaggcttgt tgccggcttt tgtataataa tcatggagtg tgtaaaaacc
      661 taaggttgaa agcccgagaa aaatcaactg tggccatgtt tcgtccaaac gtatttctaa
      721 tagccataaa gtctctgcac caagggctac cgccgcaaag ctgatgagta aattggagaa
      781 ataaagaaac cgtatgatcc ggttcaatgt atcagttgag aatgattatg ggcttatcag
      841 tctgaacagt gtcacttaca tttttagcct tgtccctgat ccagaaatag aaggtggtgg
      901 tatcgggtct gccacaggcc ggtccgggca aagcgacata gcccggtaca aactggccat
      961 ttacaaatgt gatttcaatt tcagctttgg aattggcagt gatgggaaat ggaggcatca
     1021 ggtattttaa ttgccggttg ctggcggtgc acctggttgt tttggtggca ataaaaatac
     1081 tatccgtcaa atcgccttct ttgtcagtca cctgtagcgt gaattttata agtccgccac
     1141 gggctacagt gtagtctgcc acttccttaa actcgagttg aggccttgtt gtgaatttgt
     1201 ctttggcaca accagaagcc accatcaggc caaaacaaaa aacggtcaat gaaaaaagtg
     1261 ttgatctttg aaatgccata atccaaatgt aacaataagt tgaatctgta ctcaaaggct
     1321 aaaatagccg aacaaatttt taacgttcaa ccggaaaact ttgttgcact tgcccgggag
     1381 atccaccagg gacagttgca tgccaaccct gttttcagcc agtatcgcca ggccaccgga
     1441 agggccattc agcctgtgga tggattgcag gacttcagct ttttgcccat ttcttttttc
     1501 aaaacccacg aggtaaaatg ttttgaccag ggaccggcca tcattttcac cagcagcggc
     1561 accaccggca tggtgccgag ccggcatttt gtgaaagacc tggattggta tgaaaaaagt
     1621 ttcatggcat ctttttcatt tgcctatggt gatcctgcgc aattggcttg gctatgcctg
     1681 ctgcctgcct acctggagcg ggaaggttca tcactggtgt acatggccaa cgcttttgta
     1741 catgcctctc aataccggga gagcggcttt tttctgaagg cggatgataa attgcttcaa
     1801 gccttggaaa atcttcaaaa gcaaaaagcc cctgccgtgc tgctgggtgt caccttcgca
     1861 ctgcttgatt ttgccgaagc ccatgctggc ctggatttaa atggtatcat catcatggag
     1921 accggaggca tgaaaggcag gcgccaggaa atgatcagga ccgaagtgca cgaaca
//
LOCUS       DATIQF010000263         3085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_247170,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000263 DATIQF010000000
VERSION     DATIQF010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3085
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247170"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            189..641
                     /locus_tag="VLL95_04225"
     CDS             189..641
                     /locus_tag="VLL95_04225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38096.1"
                     /translation="MDTNTTTNIFDVSITQEGAQYLNETAKWGKILAVVGFIFSGLII
                     VAGFMVMFIGSSFTEALGPGGGAIGTAAGFIYLLLGAIYIYPSVKLLRFSNAIPEGLR
                     SGDQQIVTMALQNLKSVFKFWGLLTLILIGIYGLVILLAMVFGAASGF"
     gene            complement(647..1432)
                     /locus_tag="VLL95_04230"
     CDS             complement(647..1432)
                     /locus_tag="VLL95_04230"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HSR38097.1"
                     /translation="MSQVSVSTPFNIYLEFEMAPFYRRVSAWVLDIMILLLYARGMKY
                     FLQEVLFPGNRYSLGVDILLVSMPMLFYHLVMEVVYHGQSLGKMALGIRVISIEGGEP
                     RLGQYLMRWIFRLWEWPLFFGYVALDSWGIFFQVFATCLLGLLVAIIVAVSNKSQRLG
                     DLAAGTTVVDLRYRYSLADTLLKDISDEGYQVRFPEVMRLSDRDINAIRSVIQYAHKK
                     KNIETAANVAQKVQQVLQIESNMEVLPFLEKLLDDYNYLATRS"
     gene            1487..2509
                     /locus_tag="VLL95_04235"
     CDS             1487..2509
                     /locus_tag="VLL95_04235"
                     /inference="COORDINATES: protein motif:HMM:NF014052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage II sporulation protein M"
                     /protein_id="HSR38098.1"
                     /translation="MREALFIKRNRDKWIRYQREQTQDPDEQAERFITLLDDLAYSRT
                     FYPQSKVTRWINSIAVGIYQHIYQNKKEKYKRLLTFWTEELPLLVRRHHRVFLFTFLF
                     FSLCLSIGVISSSKDDLFVKTILGEEYVAMTEDNISKGDPFGVYRDDDKFSMFIRIAA
                     NNIKVSLRAFVFGIFFGIGTLYILFYNGLMVGAFEYLFFAKGLGWQSVMVIWIHGTIE
                     ISSVIIAGTAGLIVGRSILFPETYSRFQSFKNGIRDALKLAIALVPFFIVAALLESYV
                     TYLMSNTFSKQNSAGLPVWLGAFILLASAGFIAWYFVWYPIQVQRRHRARQAAASSLP
                     QTIVWQ"
     gene            2506..>3085
                     /locus_tag="VLL95_04240"
     CDS             2506..>3085
                     /locus_tag="VLL95_04240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38099.1"
                     /translation="MIQRLCILFPFLFLMALSSRAQSQNQPYDSAENLMQQEGFMPEE
                     IPDKNDPPTVTLRPMPADSAHGIRQQKEYGYMRYIDSVLRAKNAAALAEQQKEKPKPI
                     KIGWIRGILWGLAIAALLFIIYQIVAGRNFFIRNKRADQQQKPEEYKKELQPLQSQID
                     NAIQRREYRLATRLLFLDTLQQMAGKGYLHLMQ"
BASE COUNT          777 a          802 c          740 g          766 t
ORIGIN      
        1 gaccggcaaa cccagcaacc gcagggtgct ttttgcgaga gcctattgat ttgactggta
       61 aaaagaatat acaaacagcc tgttgccatt tggcagcagg ctgttttcgt tggacacacc
      121 cggttgtttc gatgtgcggc ttcccttaat ttcggttaca taacaactca ttaaaatcac
      181 caaggccaat ggacacaaac accactacca acatcttcga tgtaagcatc acacaggaag
      241 gtgcacagta tttgaatgaa accgccaaat ggggcaagat cctggcggtg gtcggattca
      301 tttttagcgg tctcatcatt gtggcaggtt tcatggtgat gtttatcggc agctctttta
      361 ccgaagcctt gggccccggt ggaggagcca ttggtactgc ggccggtttc atctacctgc
      421 tgctgggtgc catatacatt tacccatcgg tgaaactgtt gcgattttcc aacgccattc
      481 ctgaagggtt gcgcagcggc gatcagcaaa ttgtgaccat ggctttgcaa aacctgaaat
      541 cagtattcaa gttctgggga ctgctgaccc ttattctgat tgggatttac ggcctcgtca
      601 ttctgctggc catggtattc ggcgctgctt ccggtttctg atggcattaa gaccgggtag
      661 caaggtaatt gtagtcatcc agcaattttt ccaggaaagg aagcacctcc atgttggatt
      721 caatttgcag cacctgctgc accttttggg ccacgttggc cgctgtttct atattctttt
      781 ttttgtgggc atactggatc acggatcgga tggcattgat atccctgtcg ctcaaccgca
      841 tcacttccgg aaagcgcacc tggtagcctt catcagaaat atcctttaac agtgtatcag
      901 ccaaagaata ccggtagcgt aaatccacta ccgtggtgcc ggcggccagg tcgcccaacc
      961 gctggctttt gttgctcacg gccacaatga tggctaccag cagtcccagc aggcaggtag
     1021 caaatacctg gaagaaaatg ccccagctgt cgagcgccac gtagccaaaa aaaagcggcc
     1081 actcccacaa gcgaaagatc cagcgcatga ggtactgccc cagccggggt tcgccgccct
     1141 caatgctgat gacccggata cccaatgcca ttttgcccag gctttgcccg tggtatacca
     1201 cttccatcac caggtggtaa aacaacatgg gcatcgaaac aagcagaatg tccacaccca
     1261 ggctgtaacg gttgccggga aataatacct cctgcagaaa atatttcatg cccctggcat
     1321 acaacaacag tatcatgatg tccagcaccc aagccgacac ccttctgtaa aagggggcca
     1381 tctcgaattc gagatagatg ttgaatggcg tggaaacaga cacctgcgac atgccagcaa
     1441 tttaacagat ttgccaatgc gcttattgcc ttaatttcaa tgaccaatgc gtgaagcgtt
     1501 attcataaaa agaaatcgtg acaagtggat ccggtaccag cgtgaacaaa cgcaggaccc
     1561 tgatgaacag gcagaacgtt tcatcacctt gctcgacgac ctggcctaca gccgcacctt
     1621 ctatccgcaa agcaaggtca cccgctggat caacagcatt gccgttggca tttaccagca
     1681 catctaccaa aacaaaaaag agaaatacaa aaggctgctt actttctgga ccgaggagtt
     1741 gcccctcctg gtgcgcaggc atcacagggt attcctgttt acctttttgt ttttcagcct
     1801 ctgcctcagc ataggtgtga tctcctcttc aaaagatgac ctgtttgtaa aaaccatcct
     1861 tggcgaagag tatgtggcca tgacagagga caatatcagc aaaggcgatc cctttggtgt
     1921 gtaccgtgac gacgacaaat tcagcatgtt cattcgcatt gccgccaaca acatcaaagt
     1981 atcgctccgt gcatttgtgt tcggtatctt ttttggcatc ggcaccttgt acattttgtt
     2041 ttacaatggc ctgatggtgg gcgctttcga atatttgttt tttgccaaag gtctgggctg
     2101 gcaatcagtg atggtgatct ggatccatgg caccatcgaa atttcatcgg tgatcattgc
     2161 tggcacagcc gggctcattg tggggcgcag cattttgttt cctgaaacct acagtcgttt
     2221 tcaatccttc aaaaatggca tacgcgatgc actgaaactg gccatcgccc ttgttccgtt
     2281 tttcattgtg gctgccctgc tcgaaagcta tgtcacctac ctgatgagca acacgtttag
     2341 caagcaaaat agcgccggct tgccagtgtg gctgggcgca ttcatcctgc tggcttcggc
     2401 cggttttatt gcctggtatt ttgtctggta tcccatacag gtgcagcgcc ggcatcgtgc
     2461 caggcaggct gcggccagtt ctcttcccca aacaattgtg tggcagtgat acagagactt
     2521 tgcattttat ttcccttcct gtttttgatg gcgctgtctt cccgggcaca gtcgcaaaat
     2581 cagccatatg attctgcgga aaacctgatg cagcaagaag gctttatgcc ggaagaaatt
     2641 cctgacaaga atgatccgcc cacggtcacc ttgaggccca tgcctgctga ttcggcacat
     2701 ggcatcaggc agcaaaaaga atacggctac atgcgataca tcgacagtgt attgcgggca
     2761 aagaacgctg ctgcgctggc cgaacagcaa aaagaaaagc ccaaaccaat aaagattggc
     2821 tggatccgtg gcattctgtg gggactggct atcgccgcct tgttattcat catttaccaa
     2881 atagtagccg gcaggaattt tttcatccgc aacaaacggg cagatcaaca gcaaaagcct
     2941 gaggaataca agaaggaact acagccattg caatcgcaaa tagacaacgc cattcagcgc
     3001 agggaatacc ggctcgctac ccgcctgctc ttcctggata cattgcagca gatggcaggc
     3061 aaaggatacc tgcacctgat gcagg
//
LOCUS       DATIQF010000264         1640 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_277486,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000264 DATIQF010000000
VERSION     DATIQF010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277486"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..275
                     /locus_tag="VLL95_04245"
     CDS             <1..275
                     /locus_tag="VLL95_04245"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR38100.1"
                     /translation="DIRHMTPFLVQLLMYAAPVVYPTSKIPDNWKLFYAINPMVGVIE
                     GFRSALLGSIDFPWMYVGVGSITSIILFIYGIYYFGKTEKTFADIV"
     gene            294..1541
                     /locus_tag="VLL95_04250"
     CDS             294..1541
                     /locus_tag="VLL95_04250"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR38101.1"
                     /translation="MSSVIKVDNISKRYRIGGPEKKYDTFAAQLMGMVKAPFQNFKEL
                     RKLKHFDSEDDATTFWALRNVSFELQEGEVLGVIGHNGAGKSTLLKILSRITEPSEGE
                     ITIQGRVSSLLEVGTGFHPDLSGRDNIYMNGTILGMTKREIDRKLDEIVEFSGISKHI
                     DTPVKRYSSGMTVRLAFSVAAHLEPEILIIDEVLAVGDAEFQKKCLGKMKDVSGQGRT
                     VLFVSHNMPAVQTLCTKALWLQKGQVKEIGNTHTVATNYLRGFKDGLIGNSYKASEQK
                     SGCYFDEITLTSTGGENFLMGDDIIFDFKVQADFSLPNFQIGVKMFDQDNHLVTSFYN
                     TDFGIQFDLKEGMNQFSFRTKGCNVLPGSYHLSFTAQFNYGQQLFEKVEDLVSIEFLT
                     HDVSGAGIPLLKDRGMIWLPLER"
BASE COUNT          444 a          332 c          420 g          444 t
ORIGIN      
        1 gagacatcag gcacatgact ccctttttgg tacaacttct tatgtatgct gccccggttg
       61 tttatcccac ttccaaaatc cctgacaact ggaaactctt ttatgccatt aatccaatgg
      121 tgggcgtgat tgaaggattt cgctctgctc tgttgggaag catagacttt ccgtggatgt
      181 acgttggcgt gggaagtatt acctccatta ttttattcat ttacggcatc tactattttg
      241 gcaaaacgga aaaaacgttt gccgacatcg tttaattgcc ataaacctta cttgtgagtt
      301 ctgtaattaa ggttgacaac attagcaaac gctaccgcat tggtgggcct gaaaaaaagt
      361 acgacacttt tgcagcacaa ctgatgggaa tggtgaaagc gccgttccag aatttcaaag
      421 aattgcgcaa gcttaagcat tttgacagcg aggatgatgc tactactttt tgggctttgc
      481 gaaatgtgag ttttgaattg caggaagggg aagtgttggg agtcattggg cacaatggcg
      541 ccggcaagag cacgctgttg aaaatactga gtcgcattac agaaccttca gagggcgaaa
      601 tcaccataca gggcagggtc tcaagcctac ttgaggtggg tacaggtttc catcctgatc
      661 tttcaggccg tgataacatt tacatgaacg gtaccatttt gggaatgacc aaaagggaga
      721 ttgatcgtaa actggatgag atcgtggaat tcagcgggat ctccaagcat atcgatacac
      781 ccgtgaagcg atacagcagt ggcatgacgg tgcgcctggc cttttcagtg gcagcacacc
      841 tggagcccga gatcctgatc attgatgaag ttttggcagt gggtgatgcc gaattccaga
      901 agaagtgcct gggtaaaatg aaggatgtga gcggacaggg caggactgtt ttatttgtga
      961 gtcacaatat gccggccgtg caaacccttt gcaccaaagc actctggctg cagaaaggac
     1021 aggtaaaaga aattggtaat acgcatacgg tagcgaccaa ttatctccgt ggttttaagg
     1081 acggcctcat tggaaattcc tacaaagcct ccgagcaaaa aagcggttgt tattttgatg
     1141 agatcactct tacgagcacc ggcggtgaaa acttcctgat gggtgatgat atcatttttg
     1201 atttcaaagt gcaggcagac ttttcgttgc ccaattttca gattggagtg aaaatgtttg
     1261 accaggacaa tcacctggtc accagtttct acaacactga cttcggtatt caattcgatc
     1321 tgaaagaagg aatgaaccag ttttcatttc gtacaaaagg atgcaatgtg ttgcccggaa
     1381 gttaccacct gagtttcaca gctcaattca attatgggca acaattgttt gaaaaagtgg
     1441 aagacctggt aagcattgaa ttcctgacgc atgatgtgtc aggggcaggt atccctctgc
     1501 ttaaggacag aggcatgatc tggttgccat tggaacgata gtttatgtgc ggcattgcgg
     1561 gattggttgg attttctgaa ccagggcagt atactggcct gttgcaggaa caattgcgac
     1621 atcgtggccc tgatggttgc
//
LOCUS       DATIQF010000265         6051 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_292772,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000265 DATIQF010000000
VERSION     DATIQF010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6051
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292772"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..722
                     /locus_tag="VLL95_04255"
     CDS             <1..722
                     /locus_tag="VLL95_04255"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HSR38102.1"
                     /translation="YFAASPIQPYTIVILLEAFHWSQLLQPQFYIENGVLWLLVFVVF
                     AETGLFAGFFLPGDSLLFVAGIYSEPLAAELFHSNSEWVQLIMLTILISLAGILGNFA
                     GYWFGKKSGPFLFHRRDTFFFKKKYLYQAKDFYDKHGGGAIIVARFLPFIRTFAPIVA
                     GIVEMDFKKFTTYNILGCIAWVSSMLFAGHFLQKWIYEAFQFDLKEHLEIIVLGIVAV
                     TTAPVLIKVFFNKKKPASDTN"
     gene            760..2019
                     /locus_tag="VLL95_04260"
     CDS             760..2019
                     /locus_tag="VLL95_04260"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR38103.1"
                     /translation="MESTARQKQVGIFSIPVLVAALGYFVDIYDLLLFTIVREPSLQG
                     IHVPDAEMVLASTKIINFQMVGLLIGGILWGVLGDKKGRLSVLFGSILLYSVANFVTG
                     FIQSVDQYAWARFVAGIGLAGELGAGITLVSELLPKEKRGVGTSMVAGVGLSGAVVAY
                     FTYKVSNDWRLCYMIGGGLGLGLLILRISVAESGMFHFAKASKSARGNFLMFFNNKKR
                     FRKYVLAILIGLPTWYVIGILVNLSNRFAGELFGDKTLESGRAIMFAYAGISLGDISI
                     GLVSQWMKSRKKALYLFYAMTIAGVIFFFSPFNNSNSTMYATCAFLGFATGFWAIFVT
                     MGAEQFGTNIRATAATTIPNMVRGALVLINLMFVDLFQKSWNWSLVQSGIVTGVIVIS
                     VTLVAAYFTEETFHKDLNYLEMEEMMP"
     gene            2070..3065
                     /locus_tag="VLL95_04265"
     CDS             2070..3065
                     /locus_tag="VLL95_04265"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HSR38104.1"
                     /translation="MPKFLIIRFSSIGDIVLTTPVVRCLKKQVPDAEIHFLTKYAFRS
                     ILEHNPYIDHLHLMKDDLNAVIQNLKAYQFDYIIDLHHNLRTLRVKRGLGRPSFSFDK
                     LNIEKWLLTNFKIDRLPPVHIVDRNLAAVKSFGVVNDGAGLDYFIGPDETVPSEDIPT
                     SHIAGYVGVVIGAALATKKMPVEKLQDVCRQIPHPIMLLGGPEDREDGDQIAALDPER
                     IYNACGKFSLNESADLVRKAKLIVTHDTGLMHIAAAFGKPVISIWGNTVPAFGMGPYY
                     GNRSVPHKSFEVEGLRCRPCSKIGYKKCPKGHFKCMALQPTEQIARAAIEMLGLP"
     gene            3296..3826
                     /locus_tag="VLL95_04270"
     CDS             3296..3826
                     /locus_tag="VLL95_04270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38105.1"
                     /translation="MKTVFLSLMALSLVLGNANAKDTASSTKNAVVAEKSVPSKPAYD
                     RLVEENRILREKLEALANESAELKSTVEYNTMMSNMLTKLSENRSEGTVADLESEVAY
                     NEMMSNMFTRIREEEKADALADHASLDEFNQMMDKMFTKIETEKAADKQADEEAEKAY
                     NQMMANMLLKLKAGKN"
     gene            4045..4488
                     /locus_tag="VLL95_04275"
     CDS             4045..4488
                     /locus_tag="VLL95_04275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38106.1"
                     /translation="MKKTITLLALASIVSCLAFATEASTDSQKLMPHSPATSLATYEK
                     VARENETLKAEVARLADANEELKSQIAYQTMMANMLLTLKQQEAEDKKADLEATLAYD
                     DIMGKMFTHLQQKTAENQKEDTLALVAYNSMMENMFRKIGSTPNR"
     gene            4809..5165
                     /locus_tag="VLL95_04280"
     CDS             4809..5165
                     /locus_tag="VLL95_04280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38107.1"
                     /translation="MKKYLLTLTMLASVSAFALPIETKKTEKPTTAAAAAVADTNPMV
                     SLPQLQEENAILKTQLMNLMNENEELKSKLAYETTMRNMLTLLNDNRQQEKVEDMKAT
                     IQYNQLMANMFLKLKK"
     gene            complement(5301..>6051)
                     /locus_tag="VLL95_04285"
     CDS             complement(5301..>6051)
                     /locus_tag="VLL95_04285"
                     /inference="COORDINATES: protein motif:HMM:NF004863.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HSR38108.1"
                     /translation="STGDYSKTAGSDVVVITSGIPRKPGMTREELIGTNAGIVKGVAE
                     NILKHSPNAIIIVISNPMDTMTYLALQSTGLPKNRIIGMGGTLDSSRFRYQLSQHLGC
                     SPSDLNALVIGGHGDTTMIPLIRHATWNSIPVTQFLDADKQQQVVNDTMVGGATLTKL
                     IGTSAWYAPGAAGAMLVEAILRDEKKLQTCCVYLEGEYGQKDICLGVPVVIGRNGWEK
                     IIELDLNESEKAAFAKSADAVRSMNDVLKTL"
BASE COUNT         1616 a         1452 c         1429 g         1554 t
ORIGIN      
        1 gctattttgc agcatcacca atccaaccct atacaatagt gatacttcta gaagcttttc
       61 attggtccca gctactgcag cctcagttct atattgaaaa tggtgtcctc tggttgctgg
      121 tatttgtggt atttgccgaa acagggttgt ttgcaggatt ctttttgccg ggagacagcc
      181 tgttgtttgt ggcaggtatt tacagtgaac cgctggctgc agagttgttt cattccaaca
      241 gcgaatgggt acagctgatc atgcttacca ttctgatttc gttggcaggc attctgggca
      301 attttgcggg gtactggttt ggcaagaaaa gcggcccatt ccttttccat cgaagggata
      361 ctttcttttt caagaaaaaa tacctctacc aggccaaaga cttctacgac aagcatggcg
      421 gcggtgccat catcgtggcc aggttcctgc ctttcatccg caccttcgct cctatagtgg
      481 caggcattgt ggaaatggac ttcaagaagt tcaccactta caatattctt ggttgtatcg
      541 cctgggtgag cagcatgctg ttcgccggcc attttcttca aaaatggatt tacgaagctt
      601 tccagttcga tctgaaggaa cacctcgaaa taattgtact gggcattgtg gcggtaacca
      661 cagccccggt attaataaaa gtttttttca ataaaaagaa gcctgcatca gatacaaatt
      721 agtgggcgaa acaatagatt gcgggcaaat cgaactgctt tggaatcaac cgcacgtcag
      781 aaacaagttg ggattttttc gataccggta ctggtggccg cgttagggta ttttgtagac
      841 atctacgatc tcctgctttt caccattgta cgcgaaccca gtttgcaggg cattcacgtg
      901 cctgacgcag agatggtttt ggccagcacc aagatcatca actttcagat ggtaggtctg
      961 ctcattggcg gcattttgtg gggcgtgctg ggcgacaaaa agggacgtct ttctgttttg
     1021 tttggctcca tactcctgta ttccgttgcc aattttgtga ccggcttcat tcaatccgtt
     1081 gatcagtatg catgggcccg tttcgtggca ggtattggcc tggcaggcga acttggcgcc
     1141 ggcattacat tggtaagcga attgctgccg aaggaaaaaa gaggcgtagg cacttccatg
     1201 gtagctggtg tgggattgag cggggctgta gttgcttatt tcacttacaa ggtttccaat
     1261 gactggcgcc tttgctatat gattggcggc gggctgggac tgggactgct catactccga
     1321 atcagtgtag ctgaaagtgg catgttccat tttgccaaag ccagtaaatc ggcccggggt
     1381 aattttctca tgttcttcaa caataaaaaa cgcttccgca aatacgtgct ggccatactc
     1441 atcgggctgc ccacctggta cgttattggc attctggtga acctgagcaa ccgatttgcc
     1501 ggtgaattgt ttggcgacaa aacactcgaa agcggacggg ccatcatgtt tgcctatgcg
     1561 ggtatttcgc tgggcgacat cagtattggg ttggtgagcc aatggatgaa aagcaggaaa
     1621 aaagcactct acctttttta tgccatgact attgccggtg tcattttctt tttcagccct
     1681 ttcaataata gtaatagcac catgtacgcc acttgtgcgt tcctgggttt tgccaccggg
     1741 ttctgggcca tatttgtaac catgggggca gagcagtttg gtaccaacat tcgggccacc
     1801 gccgctacca ctatacccaa tatggtgcgg ggcgcactgg tgctcatcaa cctcatgttt
     1861 gttgatctgt ttcagaaatc gtggaactgg tcgctggtgc aaagcggcat tgttaccggg
     1921 gtcatcgtga tttcagtgac acttgtggcg gcctatttca cggaagagac gtttcataaa
     1981 gatttgaatt atcttgaaat ggaagagatg atgccatgag tgaaatccca tcatcgtcaa
     2041 tcaaatcatc aacgcaatcc tgaagcattt tgccaaagtt tctcatcatc aggttttctt
     2101 ccatcggcga tatcgttttg acaacgccgg tagtccgttg cctgaaaaaa caggtgcccg
     2161 atgcggaaat tcattttctc accaaatatg cattcaggtc catcctggag cacaatccat
     2221 acatcgacca ccttcacttg atgaaagatg atttgaatgc agtcattcag aacttgaagg
     2281 cttatcaatt tgattacatc atcgacctgc accacaacct ccgcacattg cgggtgaaaa
     2341 gaggcctggg ccggccctcg ttttcttttg acaaactgaa cattgaaaag tggctgctca
     2401 ccaatttcaa gatcgacagg ctgcccccgg tgcatatcgt agaccgcaac cttgctgcgg
     2461 tgaaaagctt tggggtagta aatgatgggg caggccttga ctattttatt ggtcctgacg
     2521 aaacagtacc gagcgaagac atccctacca gccacattgc aggctacgtg ggggtggtga
     2581 ttggtgcggc gctggccacc aaaaaaatgc ctgtcgaaaa gttgcaggac gtttgccgcc
     2641 agataccgca tcctatcatg ttgttgggcg gacccgaaga ccgggaggac ggcgatcaaa
     2701 tcgctgcctt agacccagaa agaatttaca atgcctgcgg taagttttcc ctcaatgaaa
     2761 gtgccgacct ggttcgcaaa gccaaactga tcgtgaccca cgacaccggc ttaatgcaca
     2821 ttgcggcagc ttttggcaaa ccagttatta gtatatgggg caatacagtg cccgcttttg
     2881 gcatggggcc ttattacggc aaccggtctg ttccgcacaa aagcttcgag gtggaagggc
     2941 tccgatgcag gccttgcagc aaaattgggt acaaaaaatg cccgaaaggc cattttaagt
     3001 gcatggcact gcagcccacc gaacaaattg ccagggctgc catagaaatg ctgggccttc
     3061 cgtagagcca ggatccctgg taggcctcaa aaaccattaa catttattaa cacactgcaa
     3121 atcaatacgt taatgatttg caaagtgata ttttgcacaa ccgttggcca ccattcatcg
     3181 gtcaaattca acccttcagc aggcaattag tccccttcat cctaatacat tttaagtact
     3241 atgcattcca tagtactttt acatcgtaat cattcacaaa cacaaaacac acacaatgaa
     3301 aactgtattt ctctccctga tggctcttag ccttgtattg ggaaacgcca acgccaaaga
     3361 cactgccagc tcaaccaaaa atgcggtagt ggccgaaaaa tcggttccgt ctaaacctgc
     3421 ctacgatcgc ctggtggaag agaaccgtat cctccgcgaa aagcttgagg ccctggccaa
     3481 tgaatcggcc gaactcaaga gcaccgtgga atacaatacc atgatgagca atatgctcac
     3541 caaactgagc gaaaaccgca gcgaaggcac tgttgctgat ctggaaagtg aagtggctta
     3601 caatgaaatg atgagcaaca tgttcaccag gatccgcgaa gaagaaaaag ctgatgccct
     3661 tgccgaccac gccagcctcg atgaattcaa tcagatgatg gacaagatgt tcacaaagat
     3721 tgagactgaa aaagctgccg ataagcaggc tgacgaggaa gccgaaaagg cctacaacca
     3781 aatgatggcc aacatgcttc tgaagctcaa agctggaaaa aactaagcct ggcaagggtt
     3841 tcacggaatc agatgaagga cgggatgacc gtcctttttt ttttatttgg ccaggttact
     3901 taagacccgg cttttgcttt cattagacca ctaaaccaaa acttccgccg ttgatcaata
     3961 agtagaaact gggtgtaacc tgggtcacgc aattgcgtct catatgtaca caaacacaat
     4021 acaccaacac aaaacacccc gaccatgaaa aagacaatca cactcctcgc ccttgcctca
     4081 atcgttagtt gcctggcatt tgccaccgaa gcatcaaccg attcgcaaaa actcatgccc
     4141 cactcccctg ctaccagcct ggccacttat gaaaaagtgg ccagggagaa cgaaaccctg
     4201 aaagctgaag tggcaagact ggccgacgcc aatgaagaac tgaaaagcca gatcgcttat
     4261 caaaccatga tggcaaacat gttgcttacc ttgaagcagc aggaggccga agacaaaaaa
     4321 gccgacctgg aggcaacact ggcctatgat gatataatgg gcaaaatgtt cacccatctg
     4381 caacaaaaga ccgccgaaaa ccagaaagaa gacactttgg ccctggtagc ctacaattcc
     4441 atgatggaaa atatgttccg gaaaatcggc tccacaccca atcgttaatc agcacacttc
     4501 ttacctccgg tatgattata aagagcagct acggctgctt tttttgtttg ggctattgaa
     4561 atcaatctta ttcaccaaag ctttgttaag gcactattaa tggtttgaaa aaagttgcca
     4621 ctttgaaaaa tttcaatgca gaccatactt tatgtcatta atcgtcattt tattaatact
     4681 caatctttaa atattagaca atattcaaaa acaatgcata gcctatgatt ggtattcaat
     4741 gttgatgaac ccctgctctg gaagggtaag gttaactttg ttctgcgaat ttgaaaagca
     4801 cgaatactat gaaaaagtac ttactcacat tgacaatgtt ggcctctgta tcggcctttg
     4861 cactcccgat tgaaaccaaa aaaactgaaa agccaactac cgcagcagca gctgccgttg
     4921 ccgataccaa tcctatggtg agccttcccc aattgcagga ggaaaacgcc attttgaaaa
     4981 cccagctgat gaacctgatg aacgaaaatg aagagctgaa aagcaaactg gcatatgaaa
     5041 ctaccatgcg caatatgctg actttgctca acgataacag gcagcaggaa aaagttgagg
     5101 atatgaaagc caccattcag tacaaccaac tgatggctaa catgttcctg aagttgaaga
     5161 aataagttta tcccaaagca gtaatcggcg tccacttaca gtggaatgtg acatggctgc
     5221 agttcattga atggatcaaa aatagaaagc ggttgaacga tgatcgtcca accgcttttt
     5281 tcatgccctt tacaaggtgc ttagagcgtc ttcagcacgt cgttcatgct gcgaacggcg
     5341 tctgcacttt ttgcaaaggc ggccttttca gactcattca ggtcgagttc tataattttc
     5401 tcccagccat ttctgccgat taccaccggt acgcccaggc aaatatcttt ctggccgtat
     5461 tcaccttcga ggtatacgca gcaggtttgg agtttctttt cgtcgcggag gatggcttcc
     5521 accagcatgg caccggcggc accaggtgca taccaggcgc tggttccgat cagtttggtc
     5581 agggtggcgc cacctaccat ggtatcattt acaacctgtt gttgcttgtc cgcatccagg
     5641 aattgtgtta ccggaatgct gttccaggta gcatggcgga tgagcggaat cattgtggtg
     5701 tcaccgtgtc cacctatcac cagtgcattc aggtcgctgg ggctgcaacc gaggtgctgg
     5761 ctgagctggt agcggaagcg gctgctgtcg agggtgccac ccataccaat gatgcggttt
     5821 ttgggcaagc ctgtgctttg caaggcgagg taggtcatgg tatccatcgg attgctgatc
     5881 acgatgatga tggcattggg gctgtgcttg aggatgtttt cagccactcc ttttacaata
     5941 ccagcattgg tacctatcag ttcttcacgt gtcatgcctg gcttgcgggg aataccgctg
     6001 gtaattacca ccacatcact gccggcggtc ttgctgtagt cgccggtgct g
//
LOCUS       DATIQF010000266         2682 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_156120,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000266 DATIQF010000000
VERSION     DATIQF010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2682
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156120"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2093
                     /locus_tag="VLL95_04290"
     CDS             <1..2093
                     /locus_tag="VLL95_04290"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSR38109.1"
                     /translation="MNSEFTVFKGLRVGENLQVGYTDGNTVGNSGNDGNQNNQEASII
                     AQTFRPMSIIPVYTINAPDFAGTAGGTGFGTFGNAKNPLALLYRNQDNRNRGTNLFGN
                     VYGEFDFLNHFTFRTSFGGGLNSSYNFSYPYIEYEHTENNANTTYRENSFNTFNWIWT
                     NQLTYKQSFGDHNIGVLAGYESQKGGGRQIIGASTGFFQYNYRPFINLNNGLTQNLSG
                     SVSYTPVTNVSYFGKLDYNYKGRYIMSATVRRDGSSKFLDPNKFGTFPAFSLGWRVVE
                     ENFMRGVKFINDLKVRGGWGKMGNEAALSPSNAYTTFASNRGASWYDMAGTQSSPWEG
                     FFLSFVGNPNGTWETNVSTNVGFDATILNNSTDIVFDWYQRRTEDLLFAPPGQGIQGG
                     AAANNPAFKNVGSMQTTGIDLMITNRAKITKDLKLNTSLVFTTYKNEITSIADNINFF
                     DANSPANEANRIGAPITRNMVGQPMNTFFGYKVIGLFQSASDVASSPTQAGAGPGRFK
                     YADINGDKKIDADDRTVLGNPNPDFSYGLNLGLEYKRFDFTAFFYGVHGRELFNFTRW
                     WTDFSGGFPGGRSKRALNESWLPDGSRPNATTPIQETNNGFSSGSAVNSYYVENGSYF
                     RLRNLQVGYTFNLNSSKISNLRVYLQGTNLFTITKYSGLDPEVIVNDERSQGVDVGAF
                     PVVKQFLFGVNVKF"
     gene            2138..>2682
                     /locus_tag="VLL95_04295"
     CDS             2138..>2682
                     /locus_tag="VLL95_04295"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSR38110.1"
                     /translation="MKRKAVLIVGLIAVMAGLYACKKGFLTQSPKGVLDEETLASAKG
                     VDKLLIASYAMLDGFDGGFWIGGEWGSGGSNFLYGGIGGGDANKGSDPGDQGPNMTPV
                     QRHEATSTNGALNERWKAIYEGVKRTNTVLQVLGKATSVDDATRKNLSGQARALRAWY
                     HFQARITWGKVPYLDEKIDADL"
BASE COUNT          691 a          703 c          673 g          615 t
ORIGIN      
        1 gtatgaacag tgaattcact gtattcaaag gactgcgtgt aggcgaaaac ctccaggtgg
       61 gctataccga tggcaacacg gtgggcaaca gtggcaatga cggaaaccaa aacaaccagg
      121 aggccagcat catagcccaa accttcaggc ccatgtccat tattccggtg tacaccatca
      181 atgcacctga ttttgcaggt acagccggtg gcacaggctt tggcactttt ggtaacgcca
      241 aaaacccgct ggcccttttg taccgcaacc aggacaaccg caacagggga accaacctgt
      301 ttggtaacgt gtatggcgaa ttcgatttcc ttaaccattt cactttcagg accagctttg
      361 gtggcgggtt gaacagcagt tacaatttca gctaccccta catagagtat gagcatactg
      421 aaaacaatgc caataccact tacagggaga acagcttcaa tacctttaac tggatctgga
      481 ccaaccaact tacctacaag cagagtttcg gcgatcacaa tattggcgtg ttggcaggct
      541 atgagtccca gaaaggtggt ggccgtcaaa tcattggcgc ctctaccgga ttcttccagt
      601 acaactaccg tccgttcatt aacctgaaca acggtttgac gcagaacctc agcggaagcg
      661 tttcttacac ccccgtaacc aacgtttctt atttcggtaa actcgactat aactacaagg
      721 gccgttacat catgtcggct acagtacgtc gcgacggatc atccaaattc cttgatccca
      781 acaagtttgg tacattcccc gccttctcat tgggatggcg tgtagtggaa gaaaacttca
      841 tgagaggggt taagttcatc aacgacctga aagtgcgtgg tggatggggt aaaatgggta
      901 acgaagcggc ccttagtcct tcgaacgcct acaccacttt cgcttcaaac cgtggcgctt
      961 cgtggtacga tatggcgggt acccaaagtt ctccctggga aggattcttc ctgtcttttg
     1021 tgggcaatcc taacggaacc tgggaaacca acgtgagcac caacgtaggc tttgacgcta
     1081 ccattctgaa caacagcaca gatatcgtgt tcgactggta ccagcgcaga accgaagacc
     1141 tgttgtttgc acctcccggc cagggtatcc agggcggcgc ggctgccaac aatccggcct
     1201 ttaaaaacgt gggcagcatg cagacaactg gtatcgacct gatgatcacc aacagggcga
     1261 aaatcaccaa ggacctgaag ttgaacactt cacttgtttt caccacctac aaaaacgaga
     1321 tcaccagcat tgctgataac atcaatttct ttgatgccaa ttcgcctgcc aatgaggcca
     1381 acaggatagg tgcccccatc acccgcaata tggtgggtca acccatgaat accttctttg
     1441 gttacaaggt tatcggtttg ttccagtctg ccagcgatgt ggccagttcg cccacacagg
     1501 cgggtgccgg ccccggcagg ttcaagtatg ccgacatcaa tggcgacaaa aagatcgatg
     1561 cggatgaccg taccgtgctg ggcaatccca acccggactt ctcctatggt cttaaccttg
     1621 gcctggaata caagcgtttc gattttacag cgttcttcta cggagtacat ggccgtgaat
     1681 tgttcaattt cacccgctgg tggaccgact ttagcggtgg cttccccggt ggccgcagca
     1741 agcgtgccct caacgaaagc tggctccccg atggcagccg tcctaacgct accacgccta
     1801 tccaggaaac aaacaacggg ttcagcagtg gcagtgccgt taactcctat tatgtagaaa
     1861 acggctctta cttcaggctc cggaatctcc aggttggtta tacattcaac ctgaacagct
     1921 cgaagatctc aaacctccgt gtgtatcttc agggaaccaa cctgttcacc attaccaaat
     1981 actctggcct tgatcccgag gttattgtaa acgacgaacg ttcgcagggt gttgatgtgg
     2041 gtgcattccc ggtagtaaag cagttcctgt ttggggtgaa cgtgaaattc tgacctgcca
     2101 aaaattaaag taaaagaaac ctaacaaaga aatacttatg aaaaggaaag ccgtattaat
     2161 agtaggcctg atagctgtga tggctggcct ctacgcttgc aaaaagggtt ttctgaccca
     2221 gagcccgaaa ggtgtgctcg acgaggagac cctggcttcg gcaaaagggg ttgacaaact
     2281 gttgattgcc tcctatgcca tgctcgatgg ttttgatggt ggcttttgga tcgggggaga
     2341 gtggggatca ggtggatcca acttcctgta tggtggcatt ggtggtggtg atgccaacaa
     2401 aggcagcgac cccggtgacc agggccccaa tatgacgcct gtgcagcgcc atgaagctac
     2461 ctctaccaat ggtgcgctga atgagcgctg gaaagcgatt tacgaaggtg tgaagcgaac
     2521 caataccgtg ttgcaggtgc tgggcaaggc cacttccgtg gatgatgcca cccgcaagaa
     2581 cctttccggc caggcacggg ccctcagagc ctggtaccac ttccaggcac gcatcacctg
     2641 gggaaaagtt ccttacctgg acgaaaagat tgatgccgac ct
//
LOCUS       DATIQF010000267         4339 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_3921, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000267 DATIQF010000000
VERSION     DATIQF010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4339
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3921"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            177..563
                     /locus_tag="VLL95_04300"
     CDS             177..563
                     /locus_tag="VLL95_04300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38111.1"
                     /translation="MPKGLHLPPMLTEKEKAFLVYWAANRQKQKKLMYQLGVGLHFGL
                     LLGAIILTNFFSGWYKRAEMIANIQFNPVVLYVAVLIIAVFIAIFSKKFQWDQQELRY
                     RELLHKQKQSEESTPTISTNDEEHSS"
     gene            541..1044
                     /locus_tag="VLL95_04305"
     CDS             541..1044
                     /locus_tag="VLL95_04305"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HSR38112.1"
                     /translation="MMKNIRVKGWWSFMAMAVIAMSVSLVACNKDENTCASFDAAAED
                     AAIQAFMKAKGIKGTKYSKGLYYEIVYQGSSVGPKQTSVIFCTYKGTLLNDSTFDEQS
                     NPGRTGFQLNGLIEGWKLGLPLVGKGGTIRLMVPSNLGYGCSGSGTKIPPNSPLYFEI
                     TLVDYFN"
     gene            1134..2564
                     /locus_tag="VLL95_04310"
     CDS             1134..2564
                     /locus_tag="VLL95_04310"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009063 - amino acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HSR38113.1"
                     /translation="MSHEAISVFDMFKIGVGPSSSHTLGPWRAAQRLVQKLRSEKLLE
                     KTVQVDVLLYGSLAKTGKGHGTDVAVLLGLCDEDPVTIDVNCIGSRVEEIRKQASLPL
                     GGTQSVYFNYDEHLKFLYTEFLPFHPNAVTFLVTTSDGHHLSETFYSIGGGFVVQEQD
                     RVQASASQVLLPFPINTADDLLHWCMKTGLHVWEVVLENEASWRPEEETRKGVLRIWE
                     TMRDCIYRGCHTSGYLPGGLNVKRRAFDLNRKQIDHQAYFDFSSWIMAIRSGGDHFKY
                     TLDWVSCFALAVNEENASFGRVVTAPTNGAAGVIPAVLMYYVVFCNGLDEESITRFLL
                     TASEIGSIFKKGATISAAMGGCQAEIGVSSAMAAAALTEALGGSQKQTLMAAEIAMEH
                     HLGLTCDPIGGLVQVPCIERNTMGAIKAITASQLALQSTPDYGIVSLDKVIKTMWDTA
                     LDMNSKYKETADGGLAVHIPISLADC"
     gene            complement(2567..3664)
                     /locus_tag="VLL95_04315"
     CDS             complement(2567..3664)
                     /locus_tag="VLL95_04315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38114.1"
                     /translation="MNYRPIFIYARRAAFMLVGIVAFLCLQAQQKSSRLFSSEEILKL
                     TISGDVRPLLRDMSDAKKYYNISLQYPDGDSSYVIDLKARQRGKFRRQSGNCGLPPIL
                     LNFPKNDTVKNSLFKKQDKLKLVVTCVPGDYVEREYLVYKALQLLTPVSFKVRLVEIT
                     LQGEKLSKNQQRPFIGYLMESEEELAARNEGEMLDEKIQMGPGQLDPDSYLSMMFFQY
                     MISNVDWSSQFQHNVRLFVPKQGGLPRFIPYDFDHSGLVNAPYAQPPVELNMISVRER
                     RYRGVCDNDTARIVNTVTRFLENKEAILKLYRETTLIEASSKREALNFLEEFFDDINS
                     ERRLSQIVSTNCNSNSGGNIIIGGLPKKNNN"
     gene            complement(3710..>4339)
                     /locus_tag="VLL95_04320"
     CDS             complement(3710..>4339)
                     /locus_tag="VLL95_04320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38115.1"
                     /translation="LKGGWLTESEKEKVAEKMSYYTGLSKTYCLQSNLRVTEDRFYKE
                     LRRADGLTIGRLDARFTGRDLEDAGESVSFDPSFANIDGPFTATMNDYFQRELKFTTN
                     DDYNIFGNVRPWNYNNVQNQFLNVAESLRDAMSKNPSLKVYLGGGYYDFATPYFTAQY
                     DLEHMFLRPEQRNRVRTHWYESGHMYYIHKPSLVQFKKDINAFLDWSSK"
BASE COUNT         1061 a         1008 c         1128 g         1142 t
ORIGIN      
        1 tgtactgttc taatgccaca tgttcgataa ttattgaggc cgcgaaaata ctgtctttta
       61 atggaagcct gcccgccatc cctgcccggc aggctggcaa agtgccggtt tgaggtgaag
      121 tatttcttaa tttttggatc gacaggacat tcccgggggc ttctcaaata cctcatttgc
      181 ccaaaggcct acatttgccg cccatgctta ctgaaaagga aaaggcattt ttggtgtact
      241 gggctgccaa ccgccaaaag cagaaaaagc tgatgtacca actgggcgtc ggcctgcatt
      301 tcggattgct gctgggcgcc atcatcctta ccaatttctt ttcaggatgg tacaagcggg
      361 ctgaaatgat tgccaacatt cagttcaacc cggtggtact gtacgtggcg gtactgatca
      421 ttgctgtttt cattgccatt ttttcgaaga aatttcaatg ggaccagcag gaacttcggt
      481 accgtgagtt gttgcacaaa caaaaacaat cagaagaatc aaccccaaca atatctacaa
      541 atgatgaaga acattcgagt taaaggctgg tggagtttta tggccatggc agtcattgcc
      601 atgtcagtgt cactggtagc atgtaacaaa gacgaaaata cctgcgcttc tttcgatgct
      661 gcagccgaag acgccgccat acaggcattc atgaaggcca aaggcattaa gggaacaaag
      721 tattccaaag gactgtatta cgaaattgta taccagggca gctcagtagg gcccaagcaa
      781 accagtgtga tcttttgcac ctacaaaggc actttgctca acgattccac ttttgatgaa
      841 cagtccaacc cgggcagaac cggttttcaa ttgaatggcc tgattgaagg atggaaactg
      901 ggccttccgc tggtgggcaa aggaggaacc atccgtttga tggtacccag caacctggga
      961 tatggctgct caggcagcgg cacaaagatc ccaccaaatt cgccgcttta ttttgaaatc
     1021 acactggttg attatttcaa ctagtccgca ttcactccaa cattttattc caatggcatg
     1081 cacaggcatg ccattgtttt tttactgaca tttgaacgca ttaaaacgat tgtatgtcgc
     1141 acgaagccat ttccgttttt gatatgttca aaattggcgt gggccccagc agcagccaca
     1201 ctttggggcc gtggcgggct gcacagcggt tggtgcaaaa gctgagatcg gagaaattgt
     1261 tggagaaaac ggtacaggta gatgtgctgc tgtatggctc gctggccaaa accggcaagg
     1321 gccatggcac tgacgtggcg gtactgttgg gtctttgtga tgaggacccc gtgaccatcg
     1381 atgtgaactg cattggctcc agggtggaag aaatccgcaa gcaggcttcg ctgccattgg
     1441 ggggcaccca gtcggtttat ttcaactacg atgagcacct gaaatttctc tacaccgagt
     1501 tcctgccttt ccatcccaat gcggttacgt ttttggtgac caccagtgat ggccatcatt
     1561 tgagtgaaac attctattct atcggtgggg gatttgtggt gcaggaacaa gacagggtgc
     1621 aggcatctgc ttcgcaggtg ttgcttccct ttcccatcaa tacggccgac gacctgctgc
     1681 actggtgcat gaaaaccggg ttgcacgtgt gggaagtggt actggaaaat gaagcgagct
     1741 ggcggccgga ggaagagact cgtaaaggcg tgctgcgcat ctgggaaacc atgcgggatt
     1801 gcatttaccg gggctgccat acttcggggt atttgcccgg ggggctcaat gtgaaacgca
     1861 gggcattcga cctgaacagg aagcaaatag accaccaggc ttattttgat ttttcgagct
     1921 ggatcatggc catccgttcg ggtggcgatc attttaaata cacgctggac tgggtaagct
     1981 gttttgccct ggccgtgaac gaggaaaatg catcctttgg cagggtggtg acagcgccca
     2041 ccaacggggc ggcgggcgtt atccctgctg tattgatgta ctacgtggtt ttttgcaacg
     2101 ggctcgatga ggaaagcatc acccgctttt tgctgaccgc ttcagagatc ggcagcattt
     2161 tcaagaaagg cgctaccatt tcggcggcca tgggcggctg ccaggcggaa ataggcgtga
     2221 gcagtgcgat ggccgcggcc gccctgactg aagcgttggg tggttcgcaa aagcaaaccc
     2281 tgatggctgc tgaaatagcc atggagcatc acctgggcct tacctgcgat cccattggcg
     2341 ggttggtgca ggtgccctgc attgagcgca ataccatggg ggccatcaaa gccattacgg
     2401 ccagccagct ggcgctgcaa agcacacccg actatggcat tgtttcactc gacaaggtga
     2461 ttaaaaccat gtgggatacg gcactcgaca tgaacagtaa atacaaggaa actgcagatg
     2521 gcggattggc ggtccatatt cctatcagcc tggcagattg ctgaaatcaa ttgttgtttt
     2581 tcttcggcag acctccaatg ataatattgc cccctgaatt ggaattgcag ttggtggaga
     2641 cgatttgact cagccttctt tcactgttta tgtcatcgaa aaattcttca agaaagttca
     2701 atgcttctct tttggaactt gcttcaatca aagtggtttc tctgtacagt ttcaaaatag
     2761 cttctttatt ttcgaggaat cgggtcactg tatttacaat gcgagctgtg tcattgtcgc
     2821 aaacgccacg atatcttctt tctctaaccg atatcatatt caattcgacg ggtggctgtg
     2881 catagggagc atttaccaaa cctgaatggt cgaaatcgta aggaatgaac ctgggcagcc
     2941 cgccctgctt gggaacaaac aacctgacat tgtgctggaa ttgtgaagac cagtccacat
     3001 tggagatcat gtattgaaag aacatcatgc tgagataaga atccgggtcg agttggccgg
     3061 gccccatctg gattttttca tcgagcattt ctccctcgtt cctggcagcc aattcctctt
     3121 ccgactccat taagtagccg ataaaaggtc tttgctggtt cttggacagt ttttcgcctt
     3181 gcaaagtgat ctccaccaac cgcactttga aactgactgg cgtgagtagt tgcaaggctt
     3241 tgtacacgag gtactccctt tccacataat caccgggaac acaagtaacc accagtttca
     3301 gtttgtcctg ttttttgaac aaagagtttt ttactgtgtc attttttgga aagttgagaa
     3361 gaataggggg cagtccgcaa ttaccggatt gtcggcgaaa ttttccacgc tgtctggctt
     3421 tcagatcgat tacataactg ctgtcgccat caggatactg cagtgaaatg ttgtagtact
     3481 ttttggcatc gctcatgtcg cggagtaagg gtcttacatc gcctgaaatg gtgagtttca
     3541 atatttcttc acttgaaaat agccgggaag atttttgctg cgcctgcaag cataaaaagg
     3601 caacaatgcc gaccagcatg aacgctgccc tgcgggcata aatgaatatt ggcctgtagt
     3661 tcatacagac caatatactt aaaaaaatca gccgaaaaat gaaaccggtc tatttgctgc
     3721 tccagtcgag gaaggcatta atgtcttttt tgaactgaac gagcgaaggc ttgtggatgt
     3781 aatacatgtg gccgctttcg taccagtgtg tccgcacccg gttgcgttgt tcggggcgca
     3841 ggaacatgtg ttcgaggtcg tactgcgcgg taaaataggg tgtggcgaaa tcgtaatagc
     3901 cacccccgag gtacactttg agcgaagggt ttttgctcat ggcatcccgc aggctttcgg
     3961 ccacattcaa aaactggttt tgcacgttgt tgtaattcca ggggcgtacg tttccaaaaa
     4021 tgttgtagtc atcgttggtg gtgaatttca attcccgctg gaagtagtcg ttcatggtgg
     4081 cggtgaatgg gccgtctatg ttggcaaagg aaggatcgaa ggaaaccgat tcgccggcat
     4141 cttcgagatc gcggccggta aagcgggcat ccagtctgcc aatggtgagg ccgtcggccc
     4201 tgcgcagttc cttgtaaaaa cggtcttcgg ttacccgcag gttgctttgc aaacaatagg
     4261 tcttggaaag gccggtgtaa tagctcattt tctccgctac tttttctttt tcgctttcag
     4321 tcagccatcc gcctttgag
//
LOCUS       DATIQF010000268         2849 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_19281, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000268 DATIQF010000000
VERSION     DATIQF010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2849)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2849
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19281"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(435..>2849)
                     /gene="mfd"
                     /locus_tag="VLL95_04325"
     CDS             complement(435..>2849)
                     /gene="mfd"
                     /locus_tag="VLL95_04325"
                     /inference="COORDINATES: protein motif:HMM:TIGR00580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HSR38116.1"
                     /translation="NWEGTVVPFNTKPQPSFNRNFSLLISDLKGWEQKGFTIYLFAEQ
                     AKQLELLYNIFTDLNTEIQFNPVAVSIHEGFIDEDLKMVCYTDHQIFQRYHKFKVKQA
                     FSKNKAITLKTLRELQPGDYVTHIDHGVGIFSGLEKMEVNGRMQEAVRLRYKDGDLLY
                     VNLSSLHKISKYTGKEGHVPKMNKLGSDAWNRLKEKTTKQIKDIAEDLIKLYAERKAQ
                     KGFQHSPDTYMQTELEASFIYEDTPDQAKATADVKRDMEKDSPMDRLVCGDVGFGKTE
                     VAIRAAFKTVVDGKQAAVLVPTTILAYQHYKTFSKRLEDFPVTVDYINRFKSAKEKKE
                     TLAKLKEGKIDIIVGTHALLGKEVQFKDLGIMIIDEEQKFGVAAKEKLKQLRTTADSL
                     TLTATPIPRTLQFSLMGARDLSIINTPPPNRQPVQTEVQVFNEDNIRDAIYFETERGG
                     QVFFIHNRVATLPEMAALIRGLCPDLSIAYAHGQMDGDQLEDTILDFMDKRYDVLVCT
                     NIVESGVDIPNVNTIIVNNAHQFGLSDLHQLRGRVGRSNKKAFCYLLAPPMSTLPHDS
                     RKRLQTLEQFSDLGSGFQIAMRDLDIRGAGNLLGGEQSGFIAEIGFEMYHKILDEAIR
                     DLKRKQFKDLFKEEIQQQDDFVSDCTIETDLEILIPDTYVENIAERLSLYTRLDNSED
                     EEELISFHQELQDRFGPVPPQVEDLFRTVRSRKRAVALGFEKMLLRDNVLKCFFVPNH
                     ESPYFQSDVFMKIMQFIQTQTNKAKLKQVGKNGILVVSEVSSMEKLESFVTQLHQFAV
                     QQPVTV"
BASE COUNT          600 a          732 c          738 g          779 t
ORIGIN      
        1 gtgagcatca atggcaagct gcgcaccacc atcaacatcg cggtggatgc cgagcaggcc
       61 gaggtggaac aaattgccct gtccaatgaa gtagtgcaga agtggatgga aggcaagccc
      121 cttaagaaat tcattttcgt aaagggccgg atgatcaacg tagtggtgta gcagccggcc
      181 tccgggaatg ctgctgcctt aaaaatgtct gaaaattgtc atttttaaaa acactgctga
      241 ttgattatca atgcgtgtaa gctttaagtg attaaagtca cacaaccatc tccgcgatta
      301 gatgttcatt tgttgtagcc gtcagcaaac tatactgtag cttaaaaaat attaggggtg
      361 tgtggtgtga aacaaaaact cccaggtcga aagaccggga gttttctttt ttatgaatag
      421 ttccattctg caggttaaac agtcaccggc tgctgcacag cgaattggtg caattgcgtc
      481 acaaagcttt ccagtttttc catgctggat acttcactca ccaccaggat gccattcttg
      541 cccacctgtt tcaacttggc tttgttggtt tgcgtctgaa tgaactgcat gatcttcatg
      601 aacacatcgc tctggaaata aggcgactca tggttgggca cgaagaagca tttcaacaca
      661 ttgtcgcgaa gcaacatctt ttcaaaaccc agggccaccg cccgtttgcg gctgcgtaca
      721 gtgcggaaca ggtcttccac ctgcggcggc accggcccaa aacgatcctg cagttcctgg
      781 tggaatgaaa tgagctcttc ctcgtcttct gaattgtcga gacgggtgta caggctcaat
      841 cgttctgcaa tgttttctac ataagtatcc gggatcaaaa tctccaggtc ggtttcgatg
      901 gtacagtcgc tcacgaaatc atcctgctgc tgtatctctt ctttgaacag gtccttgaat
      961 tgtttgcgtt tgaggtcgcg gatggcttcg tcgaggattt tgtgatacat ctcaaacccg
     1021 atctcagcaa tgaaaccgct ttgctcgccg cccagcaggt tgccggcgcc acggatgtcg
     1081 aggtctcgca tggcgatctg gaagccgcta cccaggtcgc tgaactgctc cagcgtttgc
     1141 aggcgcttgc ggctgtcgtg cggcagcgtg ctcatgggcg gtgccagcag gtagcagaat
     1201 gcctttttgt tgctgcgccc tacgcggcca cgcaactggt gcaaatcgct caggccaaac
     1261 tggtgcgcat tgttcacgat gatggtgttc acgttcggaa tgtccacccc gctttctaca
     1321 atgttggtgc acaccagcac atcgtagcgt ttgtccatga aatcgagaat ggtgtcttcc
     1381 agttggtcgc cgtccatttg gccatgcgca taggcaatgc tcaggtcggg gcatagtccc
     1441 cggatgagcg ctgccatttc aggcaatgta gccacgcggt tgtgaatgaa gaacacctgc
     1501 ccgccccgct ccgtttcgaa ataaatggca tcgcggatat tgtcttcatt aaacacctgc
     1561 acttcggttt gcaccggctg ccggttgggt ggtggcgtgt tgatgatgct gagatcacgg
     1621 gcgcccatga ggctgaactg caacgtacgt ggaatgggcg tggcagtaag cgtgaggctg
     1681 tcggccgtgg tgcgcagttg tttcaatttt tccttggcgg ccacaccaaa cttctgctct
     1741 tcatcaatga tcatgatgcc gaggtctttg aactgcactt ccttgcccaa caaagcgtgg
     1801 gtgcctacaa tgatgtcgat cttgccttct ttcagtttgg ccagcgtttc ctttttttct
     1861 ttagcgctct tgaagcggtt gatataatct accgttaccg ggaaatcttc gaggcgcttg
     1921 ctgaaagttt tgtaatgctg gtaagcgagg atggtagtgg gcaccagcac agcggcctgt
     1981 ttgccatcca ccaccgtttt gaatgccgct cttatggcca cttccgtttt gccaaagccc
     2041 acatcgccac acaccagccg gtccatggga ctgtctttct ccatgtcccg cttcacatcg
     2101 gcagtggcct tggcctggtc gggcgtgtct tcgtaaatga acgaagcttc gagctccgtt
     2161 tgcatgtacg tatcagggct atgctgaaat cccttctgcg ccttgcgttc ggcgtacagt
     2221 ttgatcaggt cttccgcaat atccttgatc tgcttagtcg ttttttcctt caggcggttc
     2281 caggcatcgc tgcccagttt gttcatcttg ggcacgtgac cttccttgcc ggtgtactta
     2341 ctgatcttgt gcagcgacga caggttcacg tacaacaagt cgccatcctt gtagcgcagg
     2401 cgcaccgctt cctgcatgcg gccgttcact tccatttttt ccagcccgct gaaaatgccc
     2461 acaccatgat caatgtgcgt aacgtaatca ccgggttgca gctcccgcag cgttttcagg
     2521 gtgatggctt tgttcttgct gaaggcctgc ttcaccttga acttgtggta gcgctggaag
     2581 atctggtgat cggtgtagca aaccatcttc aggtcttcgt caataaagcc ttcgtgaatg
     2641 ctcaccgcta ccgggttgaa ttgtatttcg gtgttaaggt cggtgaaaat gttgtagagc
     2701 agctccaact gcttggcctg ctcggcaaac aggtaaatgg taaaaccttt ttgctcccag
     2761 cctttcaggt cgctgatgag caggctgaaa ttgcgattga agctcggttg tggcttggta
     2821 ttgaaaggta ccacggttcc ttcccagtt
//
LOCUS       DATIQF010000269         5996 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_125783,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000269 DATIQF010000000
VERSION     DATIQF010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5996
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125783"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..255)
                     /locus_tag="VLL95_04330"
     CDS             complement(<1..255)
                     /locus_tag="VLL95_04330"
                     /inference="COORDINATES: protein motif:HMM:NF037611.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38117.1"
                     /translation="MKKLFFLPALFLAACALGQKNLVRYVDPFIGTGGHGHTFPGATM
                     PFGMVQLSPDNGTQGWDWCSGYHYSDSVLAGFSHTHLSGTG"
     gene            complement(271..2865)
                     /locus_tag="VLL95_04335"
     CDS             complement(271..2865)
                     /locus_tag="VLL95_04335"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14 metallopeptidase family protein"
                     /protein_id="HSR38118.1"
                     /translation="MMKRLQLIAALLMISLFAKTQKDGLSYYLPDTVQYDANIPTPKQ
                     VIGHEPGEWHVTHDKLVMYMKALAAANPQRIKLQVTGTTYEGREQLLLMITAPGNHAR
                     LEEIRKQHLDLLNPEKSGSLNTGNMPAVVVMGYSIHGNESSGANAALVVGYYLAAAKG
                     AAIDDLLQNTVILFDPSFNPDGLNRFATWANQHKSKNLVSDPQSREYNEVWPGGRFNH
                     YWFDLNRDWLPAVHRESQNRLRYFHDWKPNILTDHHEMGSNATFFFQPGVPSRVHPLT
                     PVKNQDLTGKIGKYHAAFLDRIGSLYFTKEGYDDFYYGKGSTFPDMQGGIGILFEQAS
                     SRGHVQETENGLLTFPFTIRNQFVTTLSTLEAARNLRVELLNYQRDFYKDMARDASAS
                     AEKAFVFGDEYDQKKAAVMATMLTMHGVSVYKLNDNIAAGGSQFRKGNAFIVPVQAHQ
                     YKLIRTVFDKQLVYTDSLFYDVTSWTMPLAYGVPYSPLNAAQYNANLLGDVVKPGTAS
                     KGVIEAGDNLYGYLLDWRSYDAPKALWQLLSKGVKAKVAGNEMTFSINGKERKFPRGT
                     IVIPRQMQEKDFASVAAIVNEVANNCEVVFTPLATGNVLAGSDLGSRYMQKVETPGVA
                     MLVGNGVSATDAGEVWHLLDQRMDMGTTHLDLAQFNRASLDRYNTIIMVSGNYNAINK
                     EKLKEWIEKGGVLIACEDAVEWCANNGFAKLEMKKVASATDSLKNVKYADKEQIDGAQ
                     RMAGAIFRAEIDPTHPLTYGYTQPFIDLFKTNNVFIQIPKNPYVTPVKFGSAPLQSGY
                     ITRQNYAALKNSASVIAQSMGAGKVILMGDNPNFRAFWLGGSKLFMNAIFFGRNIINE
                     GSGNRGEE"
     gene            complement(2948..3379)
                     /gene="ssb"
                     /locus_tag="VLL95_04340"
     CDS             complement(2948..3379)
                     /gene="ssb"
                     /locus_tag="VLL95_04340"
                     /inference="COORDINATES: protein motif:HMM:TIGR00621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HSR38119.1"
                     /translation="MIKLQVIGNLGKDALLNQVNGKNVINFTVAHTERYRDSSGAQKE
                     KTTWVECAYWTDRTGVVPYLKKGSQVYVEGTPEIRMFNRADGTSGASLSLRVMNLQLV
                     GIREGGSPTGNGGPAPAQQSSAPSAPTAAPEMDDMSDDLPF"
     gene            3550..3990
                     /locus_tag="VLL95_04345"
     CDS             3550..3990
                     /locus_tag="VLL95_04345"
                     /inference="COORDINATES: protein motif:HMM:NF012306.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HSR38120.1"
                     /translation="MKNPPAPTHDLIWYGPLFEGEIHTDESSFLAIKNQKSQSAFAPV
                     KLLVDTGSNISGIDHSIVERLSLPRYQNPARVDGVGGIHSVGLYRCILFLRIFGMKGL
                     PLDVVAGDYRHSPYDGIIGRDVLQFCKFTFDGPGNKFVLEAINF"
     gene            4101..5180
                     /gene="mnmA"
                     /locus_tag="VLL95_04350"
                     /pseudo
     CDS             4101..5180
                     /gene="mnmA"
                     /locus_tag="VLL95_04350"
                     /inference="COORDINATES: protein motif:HMM:NF015042.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
     gene            5144..5653
                     /locus_tag="VLL95_04355"
     CDS             5144..5653
                     /locus_tag="VLL95_04355"
                     /inference="COORDINATES: protein motif:HMM:NF023746.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38121.1"
                     /translation="MRAIMSEGGAALMAVGKGSGDERAKKAAEDAISSKLLDITIDGA
                     RGVLFNVTGGPNMTLFEVNQAAAIIRETAHPDVNLIFGAVIDPNMGDDIRVTVIATGF
                     ERNSIPRRAFEKQPRTEPRRSDSVGFGRPTESFSVHADMQSGESKQAPQSPVSKDDLD
                     IPTFLRNRR"
BASE COUNT         1460 a         1572 c         1501 g         1463 t
ORIGIN      
        1 gcctgtgcca ctgagatgcg tgtgactaaa ccccgccagc acagaatcgc tgtagtgata
       61 gccactgcac cagtcccatc cctgggtgcc attgtcaggg ctcaattgca ccatcccgaa
      121 aggcatcgta gcccccggga atgtatggcc atgaccaccg gtgccaataa aaggatctac
      181 ataccgcacc aggttttttt gccccaatgc gcaagcagcg agaaaaagag ccggcagaaa
      241 aaacagtttc ttcatgccgg taaaattcag ctattcttct ccacgatttc ccgatccttc
      301 attaataata tttcttccaa aaaagatggc attcatgaaa agtttgctac cgcccagcca
      361 aaacgccctg aagttggggt tgtctcccat caggataacc ttgcctgcgc ccatggattg
      421 cgcaatcaca gatgcgctgt ttttgagcgc cgcataattc tgccgggtga tgtagccgct
      481 ctgcaatgga gcgctgccaa attttacagg cgtcacataa ggattctttg gaatttggat
      541 gaatacattg ttggttttga acagatcaat aaaaggttgg gtgtacccat aggttaaagg
      601 atgggtagga tcgatttccg cccggaaaat ggcgccggcc atgcgttgag cgccgtctat
      661 ctgctcctta tctgcatatt tcacattctt caaactgtct gtggcagaag ccactttttt
      721 catttccagt ttggcaaagc cattattggc acaccattcc acagcatcct cgcaggctat
      781 cagcacacct cctttttcaa tccactcttt cagtttctcc ttattgatgg cgttgtaatt
      841 gccactcacc atgatgatgg tattgtaacg gtcaaggctg gccctgttga attgagcaag
      901 gtcgaggtga gtggttccca tgtccatgcg ctgatcgagc aggtgccaca cttcgccggc
      961 atccgttgcg cttacgccgt tgccaaccag catggccacg ccaggcgttt caactttttg
     1021 catgtagcgg cttcccaaat cgcttccggc caacacattg ccggttgcaa ggggtgtaaa
     1081 cacaacctca cagttgttgg ccacttcgtt cacaatggca gcaactgaag cgaaatcttt
     1141 ttcctgcatt tgccgcggta tcacaatggt gccgcgggga aatttccttt cctttccatt
     1201 gatcgaaaat gtcatttcat tgccagccac ttttgctttc acgccttttg aaagcagctg
     1261 ccacagcgcc ttgggcgcat catagcttcg ccagtcgagc aggtagccgt acaggttgtc
     1321 tcctgcttct atcactcctt tcgaagcggt accaggcttc accacatctc caaggaggtt
     1381 ggcattgtac tgtgctgcat tcagtgggct atagggtacg ccatatgcca aaggcatggt
     1441 ccaactggta acatcataaa acaggctgtc ggtatatacc agttgtttgt caaaaaccgt
     1501 gcggatgagt ttgtattggt gggcctgtac cggcacgatg aaagcattgc ctttcctgaa
     1561 ttgactgcca ccagcggcaa tgttgtcatt caatttataa acacttacgc catgcatggt
     1621 gagcatggtg gccattacag cggctttttt ctggtcatac tcgtcgccaa acacaaatgc
     1681 cttttcggca gatgccgagg catcacgtgc catgtctttg taaaaatcac gctggtagtt
     1741 cagcaattcc acccgcaggt tcctggccgc ttccaatgtg gaaagggtgg ttacaaactg
     1801 gttgcgaatg gtaaaaggaa aagtgagcag gccgttctca gtttcctgta catgcccgcg
     1861 gctgctggcc tgttcaaata gaataccaat gcccccctgc atgtcgggga aggtgctgcc
     1921 cttgccatag taaaagtcat cgtatccctc tttggtgaaa tacaaactac caatacggtc
     1981 gaggaaggct gcatggtatt tgccaatctt gccagtcagg tcctggttct tcaccggcgt
     2041 cagcgggtgc acccgcgaag ggacacccgg ctggaaaaag aaagtagcgt tgctgcccat
     2101 ttcatggtgg tcggtcagga tattgggttt ccaatcgtgg aaataccgca ggcggttctg
     2161 gctttcgcga tgcactgccg gcaaccagtc gcggttcagg tcgaaccaat aatggttgaa
     2221 cctgccgccg ggccatacct cattgtattc gcggctttgc gggtcgctca ccaggttttt
     2281 gcttttgtgc tggttggccc aggttgcaaa acgattgagc ccatcgggat tgaacgaagg
     2341 atcaaaaagt atgacggtat tctgcagcag gtcatcaata gcagcgccct tggcagccgc
     2401 caggtaatag cctaccacca gcgccgcatt ggcgccactg ctttcattgc catgaataga
     2461 atagcccatg accactactg ccggcatgtt gccggtatta agcgaaccgc tcttttcggg
     2521 attcaataaa tccaaatgct gctttcgtat ttcctccagc ctggcatggt taccgggagc
     2581 ggtaatcata agcagcaact gctccctgcc ttcataggta gtacccgtta cctggagttt
     2641 aatacgctgt ggattggctg ctgccaaagc cttcatgtac atcaccagtt tatcatgggt
     2701 cacgtgccat tcacccggtt catgcccaat gacttgtttg ggcgtaggta tattggcatc
     2761 gtactgaaca gtatcgggca aatagtaaga aagcccgtcc ttttgcgttt tggcaaatag
     2821 ggaaatcatc aacagcgcag caataagttg cagtcttttc atcatagcag taggtattgg
     2881 tctttattag gcggcaaaaa agaaaaaacc cttcctgcgg aagggttttg aaaaataggt
     2941 tcatttatca aaatggcaga tcatcgctca tgtcatccat ctcaggtgcc gcggttggag
     3001 cagaaggcgc agaagactgt tgtgcggggg cagggccgcc attgccggtg gggcttcctc
     3061 cttcccttat gcctaccaat tgcaggttca tcacccgtaa tgaaagtgat gccccggaag
     3121 taccgtcggc ccggttaaac atcctgattt cgggggtgcc ttccacgtac acctggctgc
     3181 cctttttgag atagggaacc acgccggttc tgtctgtcca ataggcacat tccacccaag
     3241 tggtcttttc tttttgtgct ccgctgctgt cgcggtagcg ttcggtgtgg gcaacggtaa
     3301 aattgatcac attcttaccg tttacctggt ttagcagtgc atcttttccg aggtttccaa
     3361 ttacttgaag cttaatcata agtacatcat tttaaagtgg agccaaaaat tgagtgaaca
     3421 ttaaagttaa tgatggccgg ttgctgacca acacccaccc cgcttttttt aatttttgct
     3481 attcaaaggc tatacaagaa atccgggctc aataacctcc ggttatattt gaaatgccta
     3541 aatatttgaa tgaaaaaccc tccggcacca acgcatgatc ttatctggta tggccccctt
     3601 ttcgagggtg aaattcatac cgatgaatcc agttttcttg ccataaagaa ccaaaagagc
     3661 cagagcgcat ttgccccggt aaaattgctg gtggataccg gttccaacat ttccggcata
     3721 gaccacagca tcgtagagcg cctcagcctg ccccgctacc aaaaccccgc ccgggtagat
     3781 ggtgtaggcg gcattcactc agtagggctt taccgctgca tcctgtttct ccgcattttc
     3841 ggcatgaaag gcctgcccct ggatgtggta gccggcgact accggcacag cccttatgac
     3901 ggcattattg gccgcgatgt tttacaattt tgcaaattca cttttgatgg tcccggcaac
     3961 aaatttgtgc tggaagccat caatttctaa cgcctgctgt ggcagcgccc gacatttcat
     4021 taacaagatt gttgggcttt gtgctcctac ctttgccgtc ctgtatccgg actatgaacc
     4081 cggcaagtac agcgtaaaca atgagtaaaa aaggaaaagt gttggtcgcc atgagtggcg
     4141 gcatcgacag tacagtaacc gcactcatgc tccatgaaca gggttacgaa gtagtaggca
     4201 tcaccatgaa aacctgggat tatgcctcca gcggcaccgg cgccaaagcc aaaaaggaaa
     4261 caggttgctg caatctcgac agttttaatg acgcccgaat ggcagccgtt tagcacggct
     4321 ttccccattt cattctcgac atccgcgagg aatttggcga tttcgtcatc gagaatttcg
     4381 tggatgaata cctggccggg cgcaccccca acccctgcgt gatgtgcaat acgcatatca
     4441 agtggcgggc cttgctaaag cgggccgatg ccctggactg cgaattcatt gccacggggc
     4501 actatgccaa tattcaccag cacagcaacg gccgatacta tatcagcaaa ggactggacg
     4561 aaacaaaaga ccagagctat gtgctgtggg gcctgcagca agacctgttg agcaggacca
     4621 ttttgccctt gggcacctat cgcaaatcgg ccatcaggca aatggcagaa gattacggat
     4681 accctgaact ggccaaaaag gcggagagct acgagatctg ctttgtgccg gataacgact
     4741 accggggatt cctgaaaaga aaagtggaag gattggaaga aaaggtggca ggcggctggt
     4801 ttgttgacaa aaccggcaag aagctggggc agcacaaagg atatccgttt tataccgttg
     4861 gccagcgcaa aggattggaa atcgctttgg gcaaaccggt ttatgttacc caaatcgatc
     4921 ccgagaccaa tacggtggta ctgggcgacg aagaagacct gaaccgatct gaaatgacgg
     4981 taaccaagtt gaattggctg aagtatgacg gcgtgaccga tggcatggaa gctaccacta
     5041 agatcaggta caaagacaag ggcagccttt caaaccttta taccgctgat ggcaacatca
     5101 gggtacattt ttatgaggag gttacaacct ggactttgcc gacgtgcgcg ccatcatgtc
     5161 cgaaggcggg gcggcactga tggcagttgg aaagggctcg ggcgacgaac gggcgaagaa
     5221 agccgccgag gatgccatct ccagcaagct gctcgacatc accatcgacg gcgcccgcgg
     5281 cgtcctcttc aacgtcaccg gcggaccgaa catgaccctg ttcgaagtca accaggccgc
     5341 ggcgatcatc cgtgagaccg cacaccccga cgtcaacctg atcttcggcg cagtcatcga
     5401 cccgaatatg ggcgacgaca tccgcgtgac ggtcattgcc accggcttcg agcgcaacag
     5461 catcccgcgc cgcgccttcg agaagcagcc gcgcacggaa cccaggcgct cggactctgt
     5521 cggctttgga cgcccaacgg aatcgtttag cgtacatgcg gatatgcagt cgggtgagtc
     5581 caaacaggct cctcagtctc ctgtcagcaa ggacgacctc gacatcccga ccttcctgcg
     5641 gaaccgccgg tagatcacaa acctgacagg ttttacccgc ggtcattatt gcactgatga
     5701 gtcggcaggg taaaacctcc ctcattcagg gtttctcgaa aacctgtcag gttttttaca
     5761 taagaatatt tgtcaagtcc agttccccct ttgccagggc ggtcctggcg tgcctgggcg
     5821 aggcgcgcca gaccgccctg tgcgtttgcc tgtatccatt aatatatcca aatatgattt
     5881 ttaggagttg gagcgggaaa ggacatatgc tacaatacaa gcgatgaacg caaatatccc
     5941 ccaaaaacct gttcatgaat cgtatctaaa acaccgccgg gaattaaggt ggaaga
//
LOCUS       DATIQF010000270         1575 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_171113,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000270 DATIQF010000000
VERSION     DATIQF010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171113"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..458
                     /locus_tag="VLL95_04360"
     CDS             <1..458
                     /locus_tag="VLL95_04360"
                     /inference="COORDINATES: protein motif:HMM:NF025253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098024 - virus tail, fiber [Evidence
                     IEA];
                     GO_process: GO:0019062 - virion attachment to host cell
                     [Evidence IEA];
                     GO_process: GO:0046718 - viral entry into host cell
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tail fiber domain-containing protein"
                     /protein_id="HSR38122.1"
                     /translation="LGSFLIRTNGADRVKVDPSGNVGVGTSSPTVKFQVGANGDGTVA
                     RANSCTTFSDERYKTQIVSIDHALDKLDQIGGYYYQWKEGQDQSRQAGLIAQEVERVL
                     PEIVQTDEAGYKSVDYGKMNALLIEAVKEQQKLIKQMQQRIANLEKGKK"
     gene            488..>1575
                     /locus_tag="VLL95_04365"
     CDS             488..>1575
                     /locus_tag="VLL95_04365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38123.1"
                     /translation="MFGGLKSLLLRCNLAALLLGLLACHDLHAQQLAFRRVNTANGLK
                     DNLVFDAVKDQNGLVWIATAAGLHTYDGYKVREWNEITDQWLLTREVRDLWADPSGNI
                     WMLGANDRMLWLDKYRRPQLLSYANPKDSGNIRFIFPQNSTGHLYLLVDKKMMRVKKG
                     TTTIEKIADLPDSLLRRNYFQETEAGPDEYFITGSDRVVLLSLSKGEVKRSWQVPRAL
                     CAYFMTNGHLLVSTENNRQLFEIDAQSGSILANLGLLPDQFGKPVNGYLRYMTRLADG
                     RFAITSGYGGLYIVDAASKKIWNYSHDPLNDVSVSGNNTFRIRSTADGFIFVTTRSSG
                     LNIVNVNQPQAYSIKRFKDSVTHRIFDG"
BASE COUNT          434 a          362 c          404 g          375 t
ORIGIN      
        1 atctcggcag ctttttaatt cgcacgaatg gcgctgaccg ggtaaaggtt gatcccagtg
       61 gaaatgttgg cgttggcaca tccagtccaa cagtgaaatt tcaagtaggt gccaatggtg
      121 atggcactgt tgccagggcc aactcgtgta ctactttcag cgatgagcgt tacaaaacac
      181 aaatcgtttc tattgatcat gcgttggaca aactcgatca gatcggcggg tattattatc
      241 aatggaagga agggcaggac cagagccggc aggccgggct gattgcgcag gaagtggaga
      301 gggtgctgcc tgaaattgta caaacggatg aagcgggtta taagagtgtc gactatggca
      361 aaatgaatgc cctcttaatt gaagcagtaa aagagcagca aaaactcatt aagcaaatgc
      421 aacaacggat agccaacctt gaaaaaggga aaaaataaag tctgcagata ccctaaattg
      481 agccagcatg tttggaggcc ttaaatcact gttgcttcga tgcaacctgg cagccctgtt
      541 actagggctg ttggcctgtc atgatctgca tgcacagcag ctggcctttc gcagggtgaa
      601 tacagccaat ggtttgaaag ataacctggt gttcgatgct gttaaagacc aaaatggtct
      661 cgtatggatt gccactgcag ccgggctcca tacctatgat ggatacaaag taagggagtg
      721 gaatgaaatc accgaccaat ggctgctgac tcgtgaggtt cgcgatctgt gggcggatcc
      781 ttccgggaat atctggatgc tgggggccaa tgacagaatg ctctggctcg ataaataccg
      841 ccgtccacaa ttgctctctt atgccaatcc aaaggatagc ggcaacatcc ggtttatatt
      901 tccgcagaat tccactggac acctctacct cctggtcgac aaaaaaatga tgagggtaaa
      961 aaaaggcaca accaccatcg aaaaaattgc cgacctgccg gatagcttgt tgcgccgtaa
     1021 ttatttccag gaaacagaag cgggaccgga tgagtatttt attacgggct ccgatcgggt
     1081 agtgctgtta tcgctcagca aaggtgaagt gaagcgatca tggcaggtgc ccagggccct
     1141 ctgtgcttat ttcatgacca atgggcattt gctggtgagc acggaaaaca acaggcaact
     1201 gtttgaaatc gatgcgcaat ccggaagcat actggccaac cttgggttac tccctgatca
     1261 atttggaaaa ccggtaaacg gttacctccg ctatatgacg cggctggctg atggccgttt
     1321 cgccattacc agcggctatg gcggcttgta tattgtcgat gccgcttcaa aaaagatctg
     1381 gaactactca cacgacccgc ttaatgatgt aagtgtttca gggaacaaca ctttcagaat
     1441 tcgcagcact gccgatggtt tcatttttgt gaccacccgc tcttcaggtc tgaacatcgt
     1501 gaatgtaaac caaccccagg cctacagtat caagcgattc aaagactccg ttacccatcg
     1561 catattcgat gggtt
//
LOCUS       DATIQF010000271         5614 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_156158,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000271 DATIQF010000000
VERSION     DATIQF010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5614
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156158"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(47..2434)
                     /locus_tag="VLL95_04370"
     CDS             complement(47..2434)
                     /locus_tag="VLL95_04370"
                     /inference="COORDINATES: protein motif:HMM:NF024974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HSR38124.1"
                     /translation="MASNYANGQSCPSNIDFEKGTLDGWRYFIGNVLDQGGINVFNLA
                     EVNGPVDNRHAVVRSSPGVNDPFGGFPLASPDGSDYFLKLGNNTGGGEGEAITYEFTI
                     PANRNTYSLLYYYAVVFEGPNHLQHQQPRMEIEITNLTKNQNIDCASFSFIPFGTTLP
                     GFFESSLTQSNAPVYCKSWTPVTINLDGNAGSTIRLTFRTGDCTFRRHFGYAYIDVAS
                     DCSGEFTGASFCPRDKEVTLTAPFGFQRYTWFNADMTRQLGTGQTITLNPLPAPGTIL
                     NVQLVPYDGFGCSQTLTARLVDNLQINADAGRDTLSCNLAPVRIGSTARQGLVYNWSP
                     QSGLSNPLAANPIASPAVTTEYVLTVRSPGGGCTGSDTVKVVASNLGNSMKVIGRPQY
                     CMGSGDSAVLEVSSAETIIWYKDGVEIAGEKSNRYRAATSGLYHAFLRDAYGCAASTP
                     DLVVDIASKPKVNFSLNNASQCLVGNSFVLSNGSTNQVGTMRYQWDLGGTGSSAQRDL
                     SYSFPAAGQYEVKLVVRSNDYCADSLSALVTVFPNPVPNFEATATCVGIAFAPVNQTA
                     DTICSPVRYEWKYSNNTTSSLREPTPIVFTTPGNYSISLSVSSDQCPAPQTITKSLLV
                     EKPVAPQRYTTAFAIRNVPLNLEARNIGVQAVWSPASQLNNSQSYKPVFRGVNNQDYT
                     ITLISVGGCKTVDSLLVEIVQQARIEVPNAFTPNADGLNDFLRPVSMGIAEIRHFRIF
                     NRYGEVVYESRGEKPGWDGKYKGQALPTQTLVWMVEGVGLDGSVISKKGTTVLIR"
     gene            complement(2639..4015)
                     /locus_tag="VLL95_04375"
     CDS             complement(2639..4015)
                     /locus_tag="VLL95_04375"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HSR38125.1"
                     /translation="MKNAITLCLLFCCVFAMSQSKQDKELLKLVDQAVAEEYQQVAPG
                     CVLLIAKKGQVIYERGFGSANVELNVPMQAEMVFRIGSITKQFTAVAVLQLVEKGRIS
                     LNDSIQQYLGNFHFKGKTITIRHLLTHTSGIKGYEEIDARLPNAIRVDFAAATVIDSL
                     DKLPLDFAPGSRYSYSNSNYFLLGCIIEKLSGKTYQQFMKENIFDPIGLSSTFYESPS
                     AIIPNRVSGYAWHDEKYWNADYISMSLVYSAGALLSNAANLYMWHRALYEGKLISPEI
                     LVAATTPQHLANGQTSEYGYGWFIRNNNGVKSIGHGGAIDGFRAMENYFPEQDLYITL
                     LCDSDRETHLSLFQKVTDILLGRKGESAVEEIKLDDKILDSYVGTYKNEKYNVSIKLY
                     RANGRIYGDLSNGTGSYMMFIALSETEFLLPDVKRVRTTAQFVKEGGRAVKLILKQEE
                     PVEFVRVE"
     gene            complement(4065..4520)
                     /locus_tag="VLL95_04380"
     CDS             complement(4065..4520)
                     /locus_tag="VLL95_04380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38126.1"
                     /translation="MKSLASNLLLTFILITCCAVALAQLPDFTGHWRLNLDKSKLENR
                     PEGLTSSLFIIEQKGESLRLTRYHIFGDKQNKISFKMKADGKTRRIKVLFKGKLEKEE
                     AGLLATLWRKHFLNVVHYSFGASKDEFIADETFTGKPQDHHNRWVFDRE"
     gene            4834..>5614
                     /locus_tag="VLL95_04385"
     CDS             4834..>5614
                     /locus_tag="VLL95_04385"
                     /inference="COORDINATES: protein motif:HMM:NF036484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38127.1"
                     /translation="MASKKTKTAIPEPVAANDVIDIVGAREHNLKNIDLQIPKNQLVV
                     FTGVSGSGKSSLAFDTIYNEGQRRYMESFSAYARQFMGDMERPDVDKISGLSPVISIE
                     QKTTNKNPRSTVGTVTEIYDFMRLLFARASDAYSYNTGKKMVKFSEEEIVENIGSKYA
                     KKKISLLAPIVRGRKGHYRELFEDLRKKGYLKVRVDGEVKDLVPKMQVDRYKIHDIEL
                     VIDRLAVTPDMKVRLSQSVQKTLQQGKGLMQVLDNDSNKVTQ"
BASE COUNT         1393 a         1424 c         1403 g         1394 t
ORIGIN      
        1 agcaatcgtg actctcgatc attcatcctt ttcatgatga acaggactac ctgatcaaaa
       61 cagtcgttcc ttttttggag atcacagaac catcgagtcc taccccttct accatccaaa
      121 ccagggtttg cgttggcagt gcttgtcctt tgtactttcc atcccaaccc ggtttttcac
      181 ctctcgattc gtaaactact tccccatacc ggttgaatat cctgaaatga cggatctctg
      241 caatacccat cgaaacgggt cgcaggaaat cattcaatcc atctgcattg ggggtgaagg
      301 cattgggcac ttcaattctt gcctgctgca caatttcaac cagcagggaa tccactgttt
      361 tacaaccacc gacagagatc aaggtgatgg tgtaatcctg gttgttcacc cccctgaata
      421 ccggcttgta cgattgcgaa ttgttcaatt gcgatgccgg tgaccaaact gcctgcacac
      481 caatatttct tgcctccagg ttgagcggca cattgcgtat ggcaaaggcg gtggtatatc
      541 gttgcggcgc caccggcttt tctaccagca gtgatttggt aatggtttgt ggcgcaggac
      601 attgatcgct gctgaccgac aaactgatgc tgtagttgcc cggcgtggtg aagactatag
      661 gtgttggttc acgcaaactt gaggttgtgt tgttgctgta tttccattca taccttaccg
      721 gtgaacaaat agtgtcagca gtttggttga ccggcgcaaa tgcaatgccc acacaagtgg
      781 cagtcgcctc aaaattcggc accgggttgg gaaatacagt caccaatgcc gacaggctgt
      841 cggcacagta atcgttgctg cgcaccacca gtttcacttc gtattgtcct gccgctggaa
      901 aactatatga aagatcccgc tgtgctgaac ttccggtacc gccaagatcc cactggtacc
      961 gcatggtacc cacctggttg gtgctgccat tgctgagaac aaaactgttg cccaccaggc
     1021 attggctggc attattcaaa ctgaaattca cttttggttt gctggcaatg tctaccacga
     1081 ggtctggcgt gctggcagcg cacccgtacg cgtctcgcaa aaaggcatgg tacaaacctg
     1141 aagtggcagc ccgataccgg ttgctctttt cgcctgcaat ttccaccccg tctttgtacc
     1201 aaataatggt ttcagcacta ctcacttcca atacggcact gtcgccgctg cccatacaat
     1261 actgtggccg gccaatcacc ttcatgctat taccgaggtt gctggccacc actttcacag
     1321 tatcgctgcc tgtgcagcca cctcccggac tgcggactgt gaggacatac tcagtggtta
     1381 cagccggcga agcaatggga ttagctgcca atggattcga caagcctgat tgcggactcc
     1441 aattgtaaac caatccttgc cgggcagtgc tgccaatgcg caccggggcc aggttgcagg
     1501 aaagggtgtc acgccccgca tccgcgttga tctgcaaatt gtccaccagc cgcgccgtca
     1561 atgtttgcga acatccgaat ccatcgtatg gcaccaactg tacattcaat atagtgccgg
     1621 gtgcgggcaa tggattcaag gtaatggtct gcccggttcc cagttgcctg gtcatatcag
     1681 cgttgaacca ggtgtagcgc tgaaacccaa acggggccgt aagcgtcacc tctttatcac
     1741 gggggcaaaa agaagccccg gtaaattctc cgctgcaatc ggatgccaca tcgatatagg
     1801 cataaccaaa atgccggcgg aaagtgcaat cgccggtgcg aaaggtgagg cgtatggtac
     1861 ttcccgcatt gccatcgagg ttgatggtga ccggcgtcca gcttttgcaa tacactggcg
     1921 cattgctttg tgtcagggat gattcaaaaa agccgggcag cgtggtgcca aacggaatga
     1981 aactaaagga ggcgcaatcg atgttttgat ttttggtgag gttggtgatc tcaatctcca
     2041 tccggggttg ctggtgttgt aaatggttgg gcccttcaaa taccactgca tagtaataca
     2101 gcaggctgta cgtgtttcgg ttggcaggta tggtaaactc gtaagtgatc gcctcccctt
     2161 ctccaccgcc ggtgttattg cccagcttta aaaaataatc gctgccatcg gggctggcca
     2221 atggaaagcc accaaatgga tcattgacgc cgggtgaaga ccgcactact gcatgcctgt
     2281 tatcgaccgg cccattcacc tccgccaggt tgaaaacatt gataccgccc tggtccagca
     2341 cattgccaat aaaatagcgc cacccgtcga gtgtgccttt ttcaaaatcg atattggagg
     2401 ggcaactttg cccattggca taattgcttg ccatcagcca aagcaatacc cacccagccc
     2461 agcgaagttg ccaggcagga aagggttgaa tggcctgatt actatggtgg acgctgcttt
     2521 gaggcattac cagttatttc catagtggag aaaacgatgg ggacattaaa tgtaaaaaaa
     2581 tgcaccggca ctagggcatg tttccaaagc gattccattg gtgtggtttg aagccgattt
     2641 attctactct cacaaactca acaggctcct cttgcttcag aatcaatttc acggccctgc
     2701 ctccctcctt gacgaattgg gcggttgtcc tcacccgctt tacatccggg agcaaaaatt
     2761 ctgtttccga tagcgctatg aacatcatat aagaacccgt accgttagag aggtctccat
     2821 agattcgtcc gtttgcccgg tacagcttta tactcacatt gtatttttca tttttatagg
     2881 tgcccacata actgtctaat attttgtcat ccagctttat ttcttcgaca gcgctttcac
     2941 cttttctgcc taacaaaatg tccgtcactt tctgaaagag agacaggtga gtctccctgt
     3001 ctgaatcgca gagcagcgtg atgtacaggt cctgttccgg gaaataattt tccatcgccc
     3061 tgaacccatc gatggcgccg ccatggccaa tggattttac cccgttgtta ttcctgatga
     3121 accatccgta tccatattca ctggtttgtc cattggccag atgttgaggc gttgttgcag
     3181 caaccaggat ttccgggctg atcagtttgc cttcatacaa tgcacgatgc cacatgtaga
     3241 gattggccgc attggagagc aatgcccctg cgctgtaaac cagtgacatg ctgatgtaat
     3301 cagcattcca atacttttca tcgtgccagg catacccact tacccggtta ggaataatgg
     3361 ctgatggtga ttcgtaaaat gttgatgaca gaccaatggg atcgaagatg ttttctttca
     3421 taaactgctg gtacgttttg ccggacagct tctcaatgat gcaacccaat aaaaaataat
     3481 tggaattgct gtagctgtag cgtgaacctg gcgcaaagtc gagcggcaat ttatcaaggc
     3541 tgtcgatcac ggtcgcagct gcaaagtcaa cgcggatagc gttaggcagc ctcgcatcaa
     3601 tttcttcata tcctttgatt cctgaagtat gcgtcagaag atgacggatg gtaattgtct
     3661 tacccttgaa atggaaattg cccaggtatt gctgaatgct gtcgttcaat gaaatccttc
     3721 ctttttcaac gagttgcagc acagcaaccg cggtgaactg cttggtgatg gagccaattc
     3781 ggaagaccat ctccgcttgc atgggcacat tcaattcaac attggctgag ccgaaacccc
     3841 tttcataaat aacctgcccc tttttcgcga tgagcaacac gcagcccggc gcaacctgct
     3901 ggtattcttc ggcgacagcc tggtcaacca gtttcaacaa ctctttgtcc tgctttgatt
     3961 ggctcatcgc gaaaacacaa caaaaaagga ggcagagggt gatggcattt ttcatgtcag
     4021 gttattggag tgattgaaaa ttgagcaatg ttgcgagcca tcatttattc ccggtcgaac
     4081 acccacctgt tgtgatgatc ctgtggtttg ccggtgaagg tctcgtctgc aataaactca
     4141 tccttgctgg cgccaaagct gtaatgtaca acgtttaaaa aatgcttgcg ccaaagcgtg
     4201 gccagcaacc cggcttcttc cttttccagt ttgcctttga acaagacttt aatacgtctc
     4261 gttttcccat cggctttcat tttaaagctg atcttgtttt gcttgtcgcc aaaaatgtga
     4321 taccgggtca gccttagaga ttcacctttt tgttcgatta tgaacaagct gctggtgagc
     4381 ccttcggggc ggttttccag tttgctcttg tcgaggttga gccgccagtg gccagtgaag
     4441 tcaggcaact gagctaaggc aacagcgcaa catgtaatta aaatgaatgt gagcaaaagg
     4501 ttggaagcaa ggcttttcat gggttggggt ttgttacttt ctaaggtgtg gatgattagg
     4561 caatgtgcaa ggttccaaaa tgctaaatgg ttggtatttt ttgggctgca tcatagtaag
     4621 aggctgatgg gctgccgggt gtgcagggcg ccgacgaagg aggcggtgcc cccgcaaagc
     4681 gggggcacgg aaccccggag cagccggaac caaagctgcc actggcactg cagcccacag
     4741 cccccacatg ccacaacttt taccactcaa aaattgttct gtggtaccca tcaccgcttt
     4801 agggggttgg ggggtacatt cgcaactcca actatggcca gtaagaaaac gaaaacagca
     4861 atacctgaac ccgtggcggc aaacgatgtg atagacattg tgggtgcccg ggagcacaac
     4921 ctgaaaaaca ttgacctgca gatacccaag aaccagctgg tggtgtttac aggcgtaagc
     4981 ggcagcggta aatcatcgct ggcctttgat accatttaca acgaagggca gcgacgctat
     5041 atggaaagct tcagcgccta tgcccgccag ttcatgggcg atatggaacg ccccgatgtg
     5101 gacaagatca gcggtctctc gccggtcatt tccattgaac aaaaaaccac gaacaaaaac
     5161 ccgcgaagca ccgtgggcac ggtgacagag atctacgact tcatgcgcct gctgtttgcc
     5221 cgggccagcg atgcctacag ctacaacacg ggcaagaaaa tggtgaagtt cagcgaagag
     5281 gaaatagtgg agaacatcgg cagcaaatac gcgaaaaaga aaatatcgct gctggcgccc
     5341 atagtgcgtg gccgcaaggg gcactaccgc gaactgtttg aagacctgcg caagaaaggc
     5401 tacctgaagg tgcgggtgga tggcgaggta aaagacctgg tgcccaagat gcaggtggac
     5461 cgctacaaga tccacgacat tgaactggtg atagacaggc tggccgtgac acccgacatg
     5521 aaagtgcggc tgagccagag tgtgcagaaa actttgcagc agggcaaggg tctgatgcag
     5581 gtgctggaca acgacagcaa caaagtgaca caat
//
LOCUS       DATIQF010000272         3836 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_277622,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000272 DATIQF010000000
VERSION     DATIQF010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3836
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277622"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..206)
                     /locus_tag="VLL95_04390"
     CDS             complement(<1..206)
                     /locus_tag="VLL95_04390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38128.1"
                     /translation="MKNYLSNGPRRQQLLFALLSLYFAFLAFKAPTRDVSVGKYVGAW
                     LIITAILVFVQGFQRSSAQDRSSAR"
     gene            complement(341..1399)
                     /gene="selD"
                     /locus_tag="VLL95_04395"
     CDS             complement(341..1399)
                     /gene="selD"
                     /locus_tag="VLL95_04395"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: protein motif:HMM:NF002098.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004756 - selenide, water dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0016260 - selenocysteine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HSR38129.1"
                     /translation="METTQPIRLTSFAHGAGCGCKIAPAVLDQIIKTSASSQQFPNLL
                     VGNNTKDDAAVYALENGHCIISTTDFFMPIVDDAFDFGRIASANAISDVYAMGGTPLM
                     AVAVLGWPVDKLPAELAANVLDGARATCALANIPLAGGHSIDSPEPFFGLAVTGTVSK
                     QQLRQNSTAQAGDLILLTKPVGVGILSTTMKRGELPAEWYEEMIRWMTALNSIGSKLS
                     SIEGVHAMTDVTGFGLMGHLIEMCEGSGLGASLHYNKIMVAKGVRECMQQNMIPDATY
                     RNWNAYSTKVKFAPGVNVMEAFKLLPDPQTNGGIMMAVHPDALSTVQQLLAQEGLADF
                     TTPIGVFVQPAEKTVVVE"
     gene            complement(1463..3535)
                     /locus_tag="VLL95_04400"
     CDS             complement(1463..3535)
                     /locus_tag="VLL95_04400"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HSR38130.1"
                     /translation="MKSLYNLLVMLTISSTAMAQSDIDRTKAPKPGPVPVINIADPAA
                     FTLPNGLKVFVVTNTKLPQVAASLVIDRDPLVEGDKAGMTGMAGSLMRRGTTKMNKIT
                     LDENVDFLGGSLSTSATSAYASSLKNNFPKLMELMADVVLRPAFSSEELEKVRKQTLS
                     GLAQQKDDPNSIAGNVSSALLYGKTHPYGEIETESTVKNITLDDIKKYHATWWKPNIA
                     YLIFVGDITVAEAKKLTESNFGGWAKGEVPKLNYAPVQAPAKTMIAVVDRPSSVQSII
                     SIGSPVQLKPGAPDAIPVSVMSNILGGGFSSRLNQNLREKYGFTYGAGGGVSSDKLVG
                     RFRASASVRNEKTDSAVGQFIHEFNRIRSEQASDSEVTALKNYMSGGFARSLEDPSTI
                     ADFALNVARYNLPKDYYRTYLTRLSKVSATEVKQMANQYVPVNNLIITIVGNAKEIAK
                     GLDKYGEVKYFDMYGNPATAPVEKKVAEGVSAESVLQQAITAYGGEAALTALKDITLS
                     GSADIMGQQMQYEQKNVMPDGFSATVKMGEMTLMQQKKAGAEYKVTMQGMDAPLDAGD
                     KVELDAKAALYEERYYLTNKDVKLELQGIEQVEGKDAYKVKITLPGADAFHSFYDVKT
                     GLRLQDVKEQEMGQAGKVSVTFKFLEYKDYNGVKVPVKLLADFGMFQQNINITDVKLN
                     QGLKLTDL"
     gene            complement(3592..>3836)
                     /locus_tag="VLL95_04405"
     CDS             complement(3592..>3836)
                     /locus_tag="VLL95_04405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38131.1"
                     /translation="KVRNQIESNFIRQNASVAGIAESLANYEVYFGDANLINTEIERF
                     RKVTREDLRNVAKKYLVDTNRVVLYYLPKSSANSKP"
BASE COUNT          870 a          994 c          918 g         1054 t
ORIGIN      
        1 cgggcactgc tcctgtcttg agccgatgat cgctgaaagc cctggacaaa aacgagaatg
       61 gcggtgatga tcaaccaagc cccgacatac ttgcccaccg acacgtcgcg ggtaggcgct
      121 ttaaaggcaa ggaatgcaaa atacagtgac agcaatgcaa acaagagttg ctgccgccgg
      181 ggcccattgc tcaggtaatt cttcataagc cggtgtattc aattgtcttg aaggtagtaa
      241 atacctgcag caagcgcacc ggctattttc gacatgcatg gtaacggctc aaactaaagc
      301 aaatcattcc acagcaagac agaaggattc gcctgggtga ttattctacc accactgttt
      361 tttcagccgg ctgtacaaaa acaccaatag gtgttgtgaa atcggcaagc ccttcttgag
      421 ccagcagttg ctgtaccgtt gaaagcgcat cgggatgcac ggccatcatg ataccgccat
      481 tggtttgcgg gtcgggcaaa agtttgaagg cttccatcac attcacaccg ggtgcaaact
      541 tcactttggt gctgtaggca ttccagtttc gataggtggc atctggtatc atattttgct
      601 gcatgcattc ccgcactcct tttgccacca ttattttgtt gtaatgaagc gaggcgccca
      661 aaccggaacc ttcacacatt tctatcaggt ggcccatcag tccaaatccg gttacatcgg
      721 tcatggcatg cacgccttct atgctgctca gtttcgatcc aatactattg agtgcagtca
      781 tccagcgtat catttcttcg taccactcag ccggcagctc cccacgcttc atggtggtgg
      841 aaaggattcc cacgcctacc ggtttggtca gcaggatcag atcgccggct tgtgccgtgc
      901 tgttttgccg cagctgttgt tttgaaacag tacctgttac agccaatccg aaaaatggtt
      961 ccgggctatc gatgctgtgg ccacccgcca gcggaatatt ggccagtgca caggtggccc
     1021 tggcaccgtc cagcacattg gccgccagct cggcaggcag cttgtccacc ggccaaccca
     1081 acacggccac tgccattagt ggcgtaccac ccatggcata cacatcgcta atggcattgg
     1141 cactggctat gcggccaaag tcgaatgcgt cgtccacgat gggcatgaaa aaatcggtgg
     1201 tgctgataat gcaatggcca ttttccaaag cataaaccgc tgcatcatct ttggtattgt
     1261 tcccaaccag gaggttcggg aactgctgac ttgaagcact tgtcttaatg atctggtcga
     1321 gcacggcagg tgcaattttg cagccgcatc cggcaccgtg tgcaaatgaa gtgaggcgaa
     1381 ttggttgcgt ggtttccata atcaggattt ggtgcaaaga aaaagaggcc gaagcctctt
     1441 ttcaattttt tcattttccc ggttacagat ccgtcagttt caggccctgg ttcagcttca
     1501 catctgttat gttgatgttc tgctgaaaca tcccaaaatc agccagcagt tttaccggca
     1561 ccttcacgcc attgtaatct ttgtattcca aaaacttgaa agtgacagat acttttcccg
     1621 cctggcccat ttcctgctct tttacatcct gcagtcgcag ccctgttttc acatcataga
     1681 atgaatggaa ggcatccgcg cctggcaagg ttattttcac tttgtaggca tcctttcctt
     1741 ccacctgctc tatgccttgc agttccagct tcacatcttt gttggtgagg taatagcgct
     1801 cctcatacaa agctgccttg gcatcgagtt ctactttgtc gccagcatcc aaaggtgcgt
     1861 ccatcccctg catggtcact ttgtattccg cccctgcttt cttttgctgc atcagcgtca
     1921 tttcgcccat tttcacggtg gctgaaaaac catctggcat tacattcttt tgctcgtatt
     1981 gcatttgctg ccccatgatg tcagccgatc ccgaaagtgt gatgtccttc agtgcagtca
     2041 acgcagcctc gccaccgtaa gcggtaatgg cttgctgtaa taccgattcg gcgctcacac
     2101 cttctgccac ttttttctca accggcgctg tagcagggtt tccgtacatg tcgaagtatt
     2161 tcacttctcc atatttgtca aggcctttgg ctatctcttt cgcattgccc actatggtaa
     2221 tgatgaggtt atttaccggc acatactgat tggccatttg cttcacttcg gtagcactca
     2281 ctttcgaaag ccgggtgagg taagtgcggt agtagtcttt tggcaaattg tagcgagcta
     2341 cattcaaggc aaaatcagca atggtagaag gatcttcgag gctgcgggca aaaccaccac
     2401 tcatgtagtt tttcagtgca gtcacctcgc tgtcgctggc ctgctcgctg cggatgcggt
     2461 tgaattcatg aatgaactgg ccaacagcac tgtcggtttt ttcattgcgc acagaagcac
     2521 tggccctgaa ccttcccacc agtttatcgc tgcttacgcc accgccggcg ccataagtaa
     2581 atccatactt ttcacgcagg ttttggttga gacggctgct gaatccacca cccaggatgt
     2641 tgctcatcac acttacagga atggcatccg gtgcgccggg tttcagttgt acaggcgacc
     2701 cgatgctaat gatgctttgt accgaactgg ggcgatccac cacagcgatc atagtcttgg
     2761 caggagcctg tacaggagca tagttcagct tgggcacttc gcctttggcc caaccgccaa
     2821 aattggactc cgttaatttt ttcgcttctg ccacagtaat gtcgccaaca aaaatgaggt
     2881 aggcaatatt gggcttccac caggtggcat ggtacttttt gatgtcatcc aatgtgatgt
     2941 tctttacagt ggactctgtt tcaatttcac cataaggatg tgttttgcca tagagcaggg
     3001 cgctgctcac attgccggct attgagttgg gatcgtcttt ctgctgcgcc aaaccactca
     3061 gggtttgctt gcgcactttt tccagttcct cactgctgaa tgccgggcgc aaaaccacat
     3121 cggccatcag ctccatcagt ttgggaaaat tgtttttcag agaagaagca taggcggagg
     3181 tggcagaggt ggaaaggctg ccgccaagaa aatcaacgtt ttcatcgagt gtgatcttat
     3241 tcattttcgt agtgcccctg cgcatgagtg atccggccat gccagtcatg ccggccttgt
     3301 cgccttccac cagcggatcg cggtctatta ccagcgaagc cgctacctgt ggcagcttgg
     3361 tattggtaac tacaaatacc tttaagccat tgggcaatgt aaaggcagcc ggatcggcta
     3421 tattgattac gggaacaggg cccggtttag gtgcttttgt acgatcgatg tcgctttgtg
     3481 ccattgctgt gctgcttatg gtaagcatta ccagcaggtt gtatagagat ttcatagtat
     3541 gctgaaagat tgaattggaa aattgagaat gatcgaaaat gagtgtatgc attatggctt
     3601 gctgttggca ctgctcttcg gtaaataata cagtaccacc cggttagtat ctaccaggta
     3661 tttcttggcc acattgcgca ggtcttcgcg ggtcaccttt ctaaaacgtt caatctccgt
     3721 attgatgagg ttggcatcgc cgaaatacac ttcataattg gccaggcttt ctgcaatacc
     3781 agccactgaa gcgttctggc gtataaaatt gctttcgatt tggttgcgca ctttct
//
LOCUS       DATIQF010000273         3031 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_292867,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000273 DATIQF010000000
VERSION     DATIQF010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3031
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292867"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            595..>3031
                     /locus_tag="VLL95_04410"
     CDS             595..>3031
                     /locus_tag="VLL95_04410"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HSR38132.1"
                     /translation="MMGKRLLLAVLAGIICLAGMAQVTTSSITGTVRADNKAALEGAT
                     ITAVHVPSGTRYVTTSGKDGQFSFPNVRVGGPYRVTISYTGYVDKVENEVYATLGNTA
                     NVDVVLSMGESQLQTATVVANRNPILNSKATGASATIGREAVNRTPTIGRTVNDLTKY
                     NAYSNGRSFGGQDSRFNNFTIDGSVFNNGFGLGSQAQAGGRTGSGAISLDALEEIQIN
                     IAPYDIRQSGFAGAAVNAVTRSGTNEFAGSVFTFWNNRDLAGTKAAENSVPNTPFSVQ
                     TNGFRFGGPIIKNKLFFFINGEFTKGTRPALDWVANRPGAAGNVSRTTAADLEDLSNF
                     MKTNFNYDLGATDNFNNESFSNKMLARIDWNINDRHKLTLRYSHHDSESDVIISNSNS
                     GLTAGNGNRQNVALAISGQNTGYGIQDNTRSFVAELNSSFKNKVNNQFLVTYNKQIED
                     RSYKTDGIFPTIDILKDGSTYTSIGMDPFTPNNRLDYGTFNITNNLTMQRGRHNFTLG
                     AAFEAFKSNNLFFYASNGVWVFNSIEDFKTAALAYKNNPNLTTSPVAINRFNYGYTLL
                     PNGQLPWQVFKTQTYSVYGQDEIKASAKLRLTFGLRVDYLNVTNTAEDYYNPVVGALT
                     FRRPDGSDIKVNTGLMPEGRFYLSPRAGFNWDVKGNRTTQVRGGTGIFLSRMPYVLIS
                     NQLGNNGVNIGRLNATGNTALNYPFTLDPTRYTPATTNIAALPPYNVNYTDPNLKFPQ
                     VWRTNLAVDQRLPWGGIVATIEGIFNKNINALNYVDVNMKPSNGQFNDGPDRRTIFPA
                     LDLSGAAAANARFI"
BASE COUNT          753 a          852 c          714 g          712 t
ORIGIN      
        1 gtagcgaccc ttggcacggc ggctggccag cactttacgg ccgttggcag tctgcatgcg
       61 cttgcggaaa ccatgaacgc ttttgcgacg acggttgtgc ggttggaatg tacgtttcat
      121 actcagtttc ttttttattt cttatgaaat gcgggccggg agaacggtcc atttttccat
      181 ttaattcgcc gggggtctgc aggccaccat gcctgctccc gccccccagg cgggatgaaa
      241 ggacggcaaa ggtaggggga tgcatccgaa atgggtggac attttgtgta ttttttgcaa
      301 tccttgaagc tccagcgtcc tattggtata gtcttccatt tgccagattt cggccctgag
      361 gcgaaagacg taataatttc ttaatacatc cgtcctttta caggggaaag ggaaaaaata
      421 tttctgttga atgattttac ggttttgctt aaccgtgttt aatcatagcg gggcgaaagc
      481 aaataaaatc caaccaaacg ccgcatttgt tacctgttta ttatttcatt aacaaaacgc
      541 acaggctgcc tacttttgcg gctcattcta ttcatcaaaa actcaacctt aagaatgatg
      601 ggaaaaagat tgctgcttgc cgtactggca ggcattattt gtttagcggg catggcccag
      661 gtaaccacca gtagcatcac tggtacagtt cgggccgaca acaaggccgc tcttgaaggg
      721 gctaccatta ccgcggtgca cgttccttcc ggcacccgct atgtaaccac ctctggtaaa
      781 gatggccagt tcagcttccc caacgtacgt gtgggtggcc cttaccgcgt taccatttct
      841 tacaccggct acgtagacaa agtggaaaac gaagtgtacg ccacactggg taacactgcc
      901 aacgtagacg tggtgctcag catgggtgaa tcgcagttgc aaaccgctac cgtggtggcc
      961 aaccgcaacc ccatcctcaa ctccaaggct accggtgctt cggctaccat tggccgcgaa
     1021 gcagtgaatc gtacccccac cattggccgt accgtaaatg acctgaccaa gtacaacgcc
     1081 tacagcaatg gtcgttcatt cggtggccag gacagccgtt tcaacaactt caccattgac
     1141 ggttctgtat tcaacaacgg ttttggtttg ggtagccagg cacaggctgg tggccgtacc
     1201 ggttccggcg ctatttcgct ggacgccctt gaagagatcc agatcaacat tgcaccctac
     1261 gacatccgcc agagcggctt tgccggtgca gcagtaaacg cagtaacccg cagtggtacc
     1321 aatgagtttg caggctctgt gttcactttc tggaacaacc gagacctggc cggtaccaag
     1381 gctgctgaaa acagcgtgcc caacacccca ttcagcgtgc aaaccaatgg tttccgcttt
     1441 ggtggtccca tcattaagaa caagttgttc ttcttcatta acggtgaatt caccaagggc
     1501 acccgccccg ccctggattg ggtggccaac cgccctggcg cagctggtaa cgtaagccgt
     1561 actactgccg ccgacctgga agatctctcc aatttcatga agaccaactt caattacgac
     1621 ctgggagcaa ccgacaattt caacaacgaa tcgttcagca acaaaatgct ggcacgtatc
     1681 gactggaaca tcaatgaccg ccacaaactg actttgcgct acagccacca cgacagtgaa
     1741 agtgacgtga tcatcagcaa cagtaactct ggccttaccg ctggtaacgg taaccgccaa
     1801 aacgtggcgc tggccatttc gggccagaac actggttatg gcatccagga caacacccgt
     1861 tctttcgtgg ctgaattgaa cagcagcttc aagaacaaag tgaacaacca gttcctggta
     1921 acctacaaca agcaaattga agaccgcagc tacaaaaccg atggcatctt ccccaccatc
     1981 gatatcctga aagacggcag cacctatacc agcattggta tggatccctt cacgcctaac
     2041 aacaggctgg actacggtac cttcaacatt accaacaacc tgaccatgca gcggggtcgt
     2101 cacaacttca ccctgggtgc ggcgttcgaa gcttttaagt cgaacaacct gttcttctat
     2161 gcttcaaatg gtgtttgggt gttcaacagc atcgaagatt tcaagactgc tgctttggct
     2221 tacaagaaca atccaaacct gactacctcc ccagtggcta tcaaccgttt caactatggt
     2281 tataccctgt tgcccaacgg tcaattgccc tggcaggtgt ttaagacaca gacctacagt
     2341 gtgtatggcc aggacgagat caaggcttct gccaaactgc gcctcacttt cggtttgcgt
     2401 gttgactacc tgaacgtaac caatactgct gaagactatt acaaccctgt agtgggtgca
     2461 ctcaccttca ggcgccccga tggttcagac atcaaagtaa atactggcct gatgcccgaa
     2521 ggacgtttct acctgtcgcc ccgtgccggt ttcaactggg atgtgaaagg caaccgcacc
     2581 acgcaggtgc gtggtggtac cggtatcttc ctgagccgca tgccttatgt actcatcagc
     2641 aaccagctgg gcaacaacgg tgtgaacatt ggccgattga acgcaacagg aaacactgcg
     2701 ctcaattacc ccttcacttt ggatcctacc cgctataccc ctgctaccac caacatcgct
     2761 gcgttgcctc catacaacgt gaactatacc gatcccaacc tgaagttccc gcaggtttgg
     2821 cgcaccaacc ttgcggttga ccagcgtctg ccctggggtg gtatcgtagc tactattgaa
     2881 ggaattttca acaagaacat caatgccctc aactatgtag atgtgaacat gaagccgagc
     2941 aatggtcagt tcaacgatgg ccccgaccgt cgcaccatct tccctgctct cgacctgagc
     3001 ggtgccgctg cagcgaatgc acgcttcatc a
//
LOCUS       DATIQF010000274         9959 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_141049,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000274 DATIQF010000000
VERSION     DATIQF010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 9959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9959
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141049"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..550
                     /locus_tag="VLL95_04415"
     CDS             <1..550
                     /locus_tag="VLL95_04415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38133.1"
                     /translation="DHLIQNISNAFTGFIMRKICTAILLTLAFMASHQGNGQSLRPQF
                     DRNEYADMMWLQFFALPDSLPAGSTFKLNSGTFTKVFSSPEVGLYNKCVIFQREDGVV
                     VLELRGTVNKPESWLENFYAAMVPAQGSLQLTSDYTFQYKLAEHENAAVHVGWLLGTG
                     FLSRHICLCWTASYEKATTTLL"
     gene            547..1155
                     /locus_tag="VLL95_04420"
     CDS             547..1155
                     /locus_tag="VLL95_04420"
                     /inference="COORDINATES: protein motif:HMM:NF013890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38134.1"
                     /translation="MTGHSQGGALAFLNTSFLHYYYKAKQQPVVLKTYASAAPKPGNQ
                     FYAYDFDFVTRNGMGFRVVNAADWVPETPFSLQTLKDYNAVNPFTDAKATIRKQKFFV
                     RLYMNNVYKKLDGSSANAARKFRKYLGEKMYTLASKSLPGYEKPSLNFSMNYATAGTP
                     IVLPTDSAYHQHFTFDGKNVFVHHMYKPYVHLLDQYYPVSKN"
     gene            1204..1497
                     /locus_tag="VLL95_04425"
     CDS             1204..1497
                     /locus_tag="VLL95_04425"
                     /inference="COORDINATES: protein motif:HMM:NF024232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3817 domain-containing protein"
                     /protein_id="HSR38135.1"
                     /translation="MEQKLLKRFYWIGIAEAVSFLLLLGIAMPLKYMAGMPKAVSVVG
                     MAHGILFVAYLFMAYACWQSLQWPFKKFVLAGLASIVPFGPFWFHKRHAGTNE"
     gene            complement(1552..3099)
                     /locus_tag="VLL95_04430"
     CDS             complement(1552..3099)
                     /locus_tag="VLL95_04430"
                     /inference="COORDINATES: protein motif:HMM:TIGR00757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HSR38136.1"
                     /translation="MNKELIINAAPQGVEIALLENKKLVELHRENAENLFGVGDLYLG
                     KVKKLMPGLNAAFVDVGFEKDAFLHYTDLSPYAKSLLKLTQICQEWKADQPYDFGRFQ
                     VEPEIVKTGKITEVLGGRPNILVQILKEPIAAKGPRLSCEISLPGRFVVLTPFNDIVA
                     VSKKIHTSDERRRLQKIIESIKPKNFGVIVRTAAEGKNTAELHDDLNQLVAKWQQIQL
                     NLKGASVPSKILSEQDKATSILMDLLNADFNRIVVNDKNIHNDIRQYLLRIAPDKADI
                     VSYYQNGAPVFDSFGVTRQVKGSFGKTVSMPSGAYLIIENTEALHVIDVNSGYKSSSS
                     NQEENSLQTNLEAAEEIARQLRLRDLGGIIVVDFIDMKLPDNKKKLFEAMEGFMRTDR
                     ARHSILPISKFGLMQITRQRMKPEIDIKTDEACPTCGGSGKISSTLVLEDEIRKNLDY
                     LLHHGHKDLTLMVHPIMAAYLKQGFPSKRMQWSVKHKQWVKIQESNTLHLVDFKFLDK
                     ENEEIKL"
     gene            complement(3397..4263)
                     /locus_tag="VLL95_04435"
     CDS             complement(3397..4263)
                     /locus_tag="VLL95_04435"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR38137.1"
                     /translation="MKKTQIILIVIALAATAGLFFWGDTVGPKKPQQAAQADNHTDHL
                     DFDKLKAGAYASLDARRQQYITSLENEVKRGDVKAQQMDIYSRLAGFWKDSVPNPVLH
                     YYYTALRSELDNSEKSLTFAAHSILGYLPYAHNTAEQVWLANKGRELFEKAFELNAGN
                     DSTIVGLGGCIIYGAESKEGPMAGIMKVRSVAERDSTNLFAQYMLGVGGMVSGQYDKA
                     AQRFEKVAKAQPKNLEVQFKLAEAYELSGNNAKAIEWYQKIMENVDVPEMKSEILKRI
                     EQLKTAEAGKAK"
     gene            complement(4315..4620)
                     /locus_tag="VLL95_04440"
     CDS             complement(4315..4620)
                     /locus_tag="VLL95_04440"
                     /inference="COORDINATES: protein motif:HMM:NF037081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HSR38138.1"
                     /translation="MRKSDLINQIAEKTGIPKVDVLVTLETMFKEVKDSLSQGENIYI
                     RGFGSFITKKRAAKIGRNIKRNVAVEIPEHFIPAFKPSKEFIAEVKTKTSGKLGQHE"
     gene            4749..5891
                     /gene="mutY"
                     /locus_tag="VLL95_04445"
     CDS             4749..5891
                     /gene="mutY"
                     /locus_tag="VLL95_04445"
                     /inference="COORDINATES: protein motif:HMM:TIGR01084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HSR38139.1"
                     /translation="MTKKKAKKAPEISSGDGKNYAPKAAKKSFTQNLLQWNAEQNTRQ
                     MPWKGEPDPYKIWLSEIILQQTRVEQGWAYYLRFIEKYPTLPQLAQAPDNAVFKLWEG
                     LGYYSRCRNLLVAARTVVDHFNGQFPKDYNAILALKGVGPYTAAAIASFAFGLPYAVV
                     DGNVIRVLARYFGIHTPFDTGSGKKFFEALAQDLLEKDKAGIYNQAIMDFGAVVCKPV
                     SPLCDECPLKKSCYAFKHQEMAGLPVKAKSISKKQRWFTCFVITGPQGKLVRQRNQKD
                     IWQHLYEFVMVEGPEAIELNSQACKKWIRQNTAIPVESLTKTVRLTQQLTHQTVHVQF
                     QDATTFYQGDVPGHAWVQDHELARLAFPRIIRKYLDAPTPGQGRLL"
     gene            5972..6412
                     /locus_tag="VLL95_04450"
     CDS             5972..6412
                     /locus_tag="VLL95_04450"
                     /inference="COORDINATES: protein motif:HMM:TIGR00621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HSR38140.1"
                     /translation="MRGVNKVILIGNLGKDPDLQYLEGNIAVAKFSLATTETYKDRSG
                     KLISQTEWHMVVLWRGLAELAQKYLHKGSLVYIEGRLKTRTWDDKEGNKKFATEIIGE
                     NMIMLDKRGEGGAHHGPEASQEGMEGFANSDIPPLGDGTENLPY"
     gene            6498..7820
                     /gene="gldE"
                     /locus_tag="VLL95_04455"
     CDS             6498..7820
                     /gene="gldE"
                     /locus_tag="VLL95_04455"
                     /inference="COORDINATES: protein motif:HMM:TIGR03520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility-associated protein GldE"
                     /protein_id="HSR38141.1"
                     /translation="MESISLFTPALSQLIFITTETGTALGLLLLLLLFISFCASGAEV
                     AFFSLSYKDINHLKTKTQPSYRRIVTLLETPKILLGVLLIANSFANIGIIFLSNHLLD
                     QFLSIANVWLQLTTKILIVAAFILLFGEILPKTFAAQNNIRFAKDVGIIVEGLYLLFN
                     RLSVVLVGFSDSIEKKMGQRTAAASIEELNHAIDLTSEEDATEKERNILKGILKFGNI
                     TVKQVMKARLDVSGLEFKSNFAAIKHQVEELHYSRLPVYHVSLDEVKGIIHTKDLLPY
                     LHEPDDFDWHQLMRPAHFVHEQKLIEDLMQEFQAKRVHFAVVVDEFGGTSGIITMEDI
                     LEEIIGEITDEFDDEESGNKKLDDLNYIFEGKTMLNDVCRIMNLSPDTFDEVKGESDS
                     LAGLILEVAGEIPTVNKVINVGDFDFTIMEVAKNRIQKIKVSIRPSAD"
     gene            7856..8437
                     /locus_tag="VLL95_04460"
     CDS             7856..8437
                     /locus_tag="VLL95_04460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38142.1"
                     /translation="MRLLIGSCCLAALLVACNSTFTPKPRGYFQVQFPEKQYQVFDEP
                     GYPYSFEYPVYARVVKDTTFFDSTPENPWWINIEFPRFGGRIYVSYKDLTQNDFSRLV
                     NDAFNLTYKHTYKASSIDDSLMVTPNGVHGVFFKVGGNAATANQFFLTDSSRNFLRGA
                     LYFDVTPNEDSLLPVNQFLLKDMEHLINTFKWK"
     gene            8465..9058
                     /locus_tag="VLL95_04465"
     CDS             8465..9058
                     /locus_tag="VLL95_04465"
                     /inference="COORDINATES: protein motif:HMM:NF022751.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3109 family protein"
                     /protein_id="HSR38143.1"
                     /translation="MIAIDNKLVSDELVEEQFVCDLLKCKGGCCVDGDAGAPLEESEK
                     HRIDEVFEAVKPYLPERHLAEIEKQGRYVYDKEFGWVTPAIDGGICVYAITDSKGIVK
                     CGIEQAYNDGKVQWKKPISCHLFPVRIKPSKDGSLEYVNYEPRETLCKPACKLGKQLK
                     VPVYQFLKEALVRKYGQEFYDTLDAVAQDYFSVKKKP"
     gene            complement(9216..>9959)
                     /locus_tag="VLL95_04470"
     CDS             complement(9216..>9959)
                     /locus_tag="VLL95_04470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38144.1"
                     /translation="NGQDLLIGTLIVDEAGMFQLPNLMIDNKATFVFTPVKKTPDNWL
                     DIFLETPVDSTFYPLAKCTYFMAVGNENAQYDTANYTFDSPSFLQPTATLQNVTFTAK
                     AKTPAEKLVEKFQGGVFDGRGYLFDGMDDNAIAAAGTVFDFLIGRVPGLNIYNNRVDF
                     SYEVSWRGFEPVYFVDGMETDKEGVLAIAANEVAAIKVISPPFYWTSMGSAGGAIAVF
                     TKRGNGGSKYGNKYRFVVNGYTPQEALWY"
BASE COUNT         2670 a         2442 c         2280 g         2567 t
ORIGIN      
        1 tgaccatttg attcaaaata tctctaacgc ttttaccggt ttcatcatga ggaaaatttg
       61 cactgccatc ctgctgaccc tggcattcat ggcaagtcac cagggcaatg gccagtcact
      121 caggccacaa ttcgatcgca acgaatatgc ggacatgatg tggctgcaat tcttcgccct
      181 ccccgactca ttgcctgcag gttcaacttt caaactcaac tctggcacct tcaccaaagt
      241 tttcagttcg cctgaagtgg gcttgtacaa caagtgcgtc atctttcagc gtgaagatgg
      301 tgtagtggtg ctggaactaa gaggcaccgt gaacaagccg gaaagctggt tggagaattt
      361 ctatgccgcc atggtgcccg cccaaggatc gcttcaactc accagcgact atactttcca
      421 atacaaactg gctgaacatg aaaacgccgc agtgcatgtg ggctggttat tgggaaccgg
      481 ttttttgtcg aggcatattt gcctgtgttg gactgcctcg tacgaaaagg caaccaccac
      541 attattgtga ccggtcatag ccagggtgga gcactcgcct ttctcaacac gtcatttctg
      601 cattattact acaaggcaaa gcagcagcct gtggtgttga aaacctatgc cagtgcggca
      661 cccaagcccg gcaatcaatt ctacgcttac gactttgatt ttgttacccg caatggcatg
      721 gggttccggg tggtgaatgc cgccgactgg gtgccggaaa cacctttttc actgcaaacg
      781 ctgaaggatt acaatgccgt caaccctttt accgatgcca aggctaccat caggaagcaa
      841 aaattctttg tgcggcttta catgaataat gtttacaaaa aactggatgg cagttcagcc
      901 aatgcggcca ggaaatttcg caagtacctg ggtgaaaaaa tgtatacact ggcctccaaa
      961 tcattgcccg gatatgaaaa acccagcctg aacttctcca tgaattatgc cacagccggc
     1021 accccaatag tactgcccac cgactccgcc tatcaccagc attttacatt tgatggtaag
     1081 aatgtttttg tacaccacat gtacaaaccc tacgtccacc tgctcgacca atactacccg
     1141 gtttcgaaga attaacactc atcattgcat gaatgcaaac agctttgcac caactgaaaa
     1201 aagatggaac agaaactgct taaaagattt tattggatag gcattgccga agctgtatcc
     1261 tttttgttgt tgctgggtat agccatgcca ctcaaataca tggcaggcat gccaaaagct
     1321 gtatcggtag tgggcatggc ccacggcata cttttcgtag cctacctgtt catggcttat
     1381 gcgtgctggc aaagtttaca gtggccattt aaaaagttcg tcctggcagg ccttgcctcc
     1441 atagtgccat tcggtccttt ctggtttcac aagcgtcatg caggcactaa tgagtaaata
     1501 aaaaaggcag ccgggaaatg ggctgccttt ttcatactga atatcagtgg atcaaagttt
     1561 gatctcttca ttctccttgt cgaggaattt gaaatccacc aaatgcaggg tgttcgactc
     1621 ctggatcttc acccattgtt tgtgtttgac actccactgc atacgcttgc tggggaagcc
     1681 ctgcttgagg taagcagcca taatggggtg taccatcagc gtcaggtctt tgtggccatg
     1741 atgcagcagg tagtcgaggt tcttcctgat ttcatcctcc agcaccaagg tgcttgatat
     1801 tttgccgctg cccccgcagg taggacaggc ttcatccgtc ttgatatcga tctccggctt
     1861 catgcgctgc cgggttattt gcatgagccc gaacttgctg atgggaagta tgctgtggcg
     1921 tgccctgtcg gtacgcataa agccttccat ggcttcaaac aacttcttct tgttgtcggg
     1981 caacttcata tcaatgaagt ccactacgat gatgccaccc aggtcacgca gtcgcaactg
     2041 gcgggctatt tcttccgccg cttccaggtt ggtctgcagg ctgttctctt cctgattact
     2101 gctgctgctt ttgtagccgc tgtttacatc aatgacatga agcgcttctg tattctcgat
     2161 aatgagataa gcgccgctgg gcatgctcac cgtttttcca aaagagcctt ttacctgacg
     2221 ggttactcca aagctgtcga aaacaggcgc tccattttgg taatagctca cgatatctgc
     2281 tttgtcggga gcaatacgca gcaggtactg gcgaatgtcg ttgtggatat tcttgtcatt
     2341 tactacaatg cgattaaaat cggcattgag caaatccatc aaaatggaag tggctttatc
     2401 ctgctcgctc aagattttgg aaggtaccga tgcacctttc aaattcaatt gaatttgctg
     2461 ccatttggcc accaattgat tgaggtcgtc gtgcagttcg gcagtattct tgccttcggc
     2521 cgccgtacga acaatcacgc cgaaattctt cggcttgatg gattcaatga tcttttgcag
     2581 gcggcgacgt tcgtcgctgg tgtgtatctt tttggatacc gcaacaatat cattgaaagg
     2641 agtgagtacc acaaaacgtc cgggcaaaga aatttcgcaa ctcaggcgag gacctttggc
     2701 tgcgatgggt tcttttaata tctggacaag gatattgggc ctgccaccca gcacctcagt
     2761 gattttgccg gtttttacaa tttccggctc cacctggaag cgaccaaaat catagggttg
     2821 atctgctttc cattcctggc aaatctgggt gagtttcagg aggcttttgg catagggact
     2881 gagatcggta taatgcagaa atgcatcctt ctcaaaaccc acatccacga atgcggcatt
     2941 gagtcctggc atcagctttt ttaccttgcc caaataaaga tcgcctaccc caaacaggtt
     3001 ctcagcattc tccctatgta gctcaactaa tttcttgttt tccagtaatg caatttctac
     3061 cccctgaggc gctgcattaa taatcagttc cttattcaca aaacattctc cgtttgtgta
     3121 aatacatgat tgaaaatggt tcgctaaccg cctgccgaat gaactggggg gataatatgt
     3181 acgggggtat tgatggcagg caacggaaaa ccaataataa actcattaac ctgccaatga
     3241 aaactggcag gttaatgatt cgataagaag tgcttattta ttcttcttct tatgacgatt
     3301 ctttctcaaa cgctttttgc gtttgtgcgt agcaatctta tgacgctttc tttttttacc
     3361 gcaaggcata attctaaaaa ttttgattca aaaacattat ttcgctttgc cggcttcagc
     3421 agttttcagc tgctcaatcc ttttcaggat ttcggatttc atttccggca catccacatt
     3481 ttccatgatc ttttggtacc attctatggc tttggcatta ttccctgaaa gttcataagc
     3541 ctcggccagt ttaaactgta cctccaaatt tttgggctga gctttggcca ctttttcgaa
     3601 acgctgcgca gctttatcat actgtccact taccattccc cctacaccca gcatgtattg
     3661 ggcaaacagg ttggtagagt ctctctccgc cacgcttcga accttcatga taccagccat
     3721 tggaccttcc ttgctttccg caccataaat gatgcatccg ccaaggccta ctatggttga
     3781 atcatttccg gcattcagct caaacgcctt ttcaaataac tcccttcctt tgttggccag
     3841 ccacacttgc tcagctgtgt tgtgcgcata cggcaggtac cccaaaatgg aatgggcggc
     3901 aaaagtgaga cttttttccg agttatccaa ttcagatcgc aatgcagtat agtaataatg
     3961 gagtaccggg ttgggcacgc tatccttcca aaatccagcc aggcgggaat aaatgtccat
     4021 ctgctgggcc ttcacatcgc cccttttcac ctcattttcc agggaggtaa tgtattgctg
     4081 gcgacgggca tcaaggctgg cataggcgcc agccttcaac ttgtcaaaat cgaggtggtc
     4141 ggtatgattg tcggcctgcg ctgcctgttg cggcttcttg ggtcccaccg tatcgcccca
     4201 aaaaaacagc cctgcagttg ctgcaagggc tatgactatc aatatgattt gcgttttttt
     4261 catgcgccca aacctccatt ctatcagagg gagggcaaag gtaacggccg gcgcttattc
     4321 gtgctgcccc aatttcccgc tggtcttggt tttaacttct gcaataaact ctttggaagg
     4381 cttgaatgca ggaataaagt gttcgggaat ttccaccgcc acatttcgtt taatgttacg
     4441 gcctattttg gcagcccttt tcttggtaat gaaacttccg aaacctcgga tatagatatt
     4501 ttcaccttgc gagaggctgt ccttcacttc tttgaacatg gtttcgaggg tgaccaaaac
     4561 gtcgaccttg ggtatgccgg ttttctcggc gatttggttg atgagatctg acttgcgcat
     4621 aatggagggg gttcgaatgc ttgttaacta caaaataagc gatgaaaatg tgaattgcaa
     4681 taattgtacc tgttttttat aaagatttca ttatcatagg caaatgagcc gattcgagca
     4741 gtaaaaacat gacaaaaaag aaggcaaaaa aagcacctga aatctcctcc ggcgacggga
     4801 aaaattacgc tccaaaagcc gcaaaaaaat cattcaccca gaacctgctg cagtggaatg
     4861 ctgagcaaaa tacaaggcaa atgccctgga agggagaacc ggatccctac aaaatttggc
     4921 tcagtgaaat catactccaa caaacccggg tggagcaagg ctgggcctat tacctcaggt
     4981 tcatagaaaa atatcccacc ttgccccagc tggcacaagc tcctgataat gcagtattta
     5041 agttatggga agggctgggt tattacagcc ggtgtcgcaa tctgctggtg gcggcacgaa
     5101 cggtggttga ccatttcaat ggccaatttc ccaaagacta caatgccatt ctagcactga
     5161 aaggcgtggg cccctataca gccgctgcca ttgccagttt tgcctttggc ctgccctacg
     5221 ctgtggtgga tggcaatgtc atcagggttt tggcaaggta ttttggcatc catactccgt
     5281 tcgacaccgg ttccggaaaa aaattctttg aagcgttggc gcaggattta ctggaaaaag
     5341 acaaagcagg catttacaat caagccatta tggattttgg ggcagtggtt tgcaaaccgg
     5401 tttcgccgct atgtgacgaa tgccccctca aaaaaagctg ctatgcattc aagcaccagg
     5461 aaatggccgg cttgcctgtg aaagcaaaaa gcatttcaaa aaaacaacgt tggttcacat
     5521 gcttcgtaat aacagggccg caggggaagt tggtacgcca acgcaaccag aaggacatat
     5581 ggcagcactt gtacgagttt gtaatggtgg aaggtcctga agctatagag ttgaattccc
     5641 aggcttgtaa aaaatggatc cggcaaaata cagcgatccc ggtggaaagc cttaccaaaa
     5701 cagtcaggct gacccagcaa ttgacccacc aaacagtaca tgtacaattc caggatgcca
     5761 ccacctttta tcagggtgat gtgcccggtc atgcctgggt gcaagaccat gaactggctc
     5821 gcctggcatt tccccgcatc atcaggaagt accttgatgc cccaacgcca ggccagggac
     5881 gcttgcttta acgccgcggc aagattggca atcggtcaaa atcagctaat tttaagagca
     5941 attagcatta atcgttggaa aaacttgtgt tatgcgaggc gtaaataagg taatactgat
     6001 aggcaatctg ggaaaagatc ccgatctgca atacctggaa ggcaacattg ccgtagcgaa
     6061 attctcattg gctaccacag aaacctataa ggacaggagc ggaaaactta tcagccagac
     6121 tgagtggcac atggtggttt tatggagagg attggccgaa ctggcccaga aatacctgca
     6181 caaaggaagc ctggtgtaca ttgagggacg cctgaaaacc cgcacctggg atgataaaga
     6241 aggcaacaaa aaatttgcaa cggaaatcat tggcgaaaac atgatcatgc tggacaagcg
     6301 aggcgaaggc ggtgcacatc atggcccgga agccagccag gaaggcatgg aaggatttgc
     6361 caacagcgat attccgccat tgggtgatgg caccgaaaac ctgccttatt aaaggccagc
     6421 ccctgaaagt cgctgcaagc ccatttcttt gcattatctg atcaccaacc accccagttg
     6481 taataatcca aatatccttg gaaagcattt cactttttac cccggcacta tcccaactta
     6541 tttttattac cactgaaacg ggaactgccc tgggtttact ccttttgctg ttgctgttca
     6601 tatccttttg cgcctccggc gccgaggtgg ctttcttctc attgtcctac aaggacatca
     6661 accacctcaa aaccaaaaca caaccttctt acaggcgcat cgtcactttg ctggaaacac
     6721 ccaaaatcct gttgggggta ttgctcatcg ccaacagttt tgccaacatt ggaattattt
     6781 tccttagcaa ccacctgctc gaccagttcc tcagcatcgc caacgtttgg ctgcaactga
     6841 ctacaaaaat tcttattgta gcagccttca tcctgctgtt tggagaaata ctacccaaaa
     6901 cattcgctgc ccaaaacaac atccgctttg ccaaagatgt tggtataata gtagaaggct
     6961 tatacctgct ttttaaccgc ctctcagtgg tgctggttgg gtttagcgac agcattgaaa
     7021 agaaaatggg acagcgcacc gcagccgcat ccatcgaaga actgaatcac gccatcgacc
     7081 ttacctccga agaagatgct accgaaaagg aaaggaacat actcaaaggc attctcaagt
     7141 tcggcaacat cactgtaaag caggtaatga aagcccgact cgatgtgagt gggctggaat
     7201 tcaagagcaa ttttgccgcc ataaaacacc aggtggaaga actgcattac agccgcctgc
     7261 cggtatacca tgtatcgctt gatgaggtta aagggatcat ccacaccaaa gacctgctgc
     7321 cgtatctgca cgaacctgat gattttgact ggcaccaatt gatgcgacct gcccattttg
     7381 tgcacgagca gaaactgatt gaagacctga tgcaggaatt ccaggccaag cgtgtacact
     7441 ttgcagtggt ggtagatgag tttggcggca ccagcggcat cattaccatg gaagacatcc
     7501 tggaagagat cattggcgaa ataaccgatg agtttgatga cgaagaaagc ggcaacaaga
     7561 aactggacga cctcaactac atcttcgaag gcaaaaccat gctcaacgat gtttgccgca
     7621 tcatgaacct ttcgccggat acgtttgatg aagtgaaagg cgaaagcgat tcactggccg
     7681 ggctgatact ggaagtggct ggggaaatac ccacggtaaa caaggtgatc aatgtgggcg
     7741 actttgattt caccatcatg gaagtggcga agaacaggat ccagaaaata aaggtgagca
     7801 tcaggccctc cgccgactga tcgtcattca caaagcacat ttgaattttt ggcacatgag
     7861 attattgatt ggtagttgtt gcctggcggc attgttggtg gcgtgcaatt caaccttcac
     7921 tcccaaacca aggggctatt tccaggttca atttcccgaa aagcaatacc aggtgtttga
     7981 cgaacccggc tacccctatt catttgaata cccggtgtat gccagagtgg tgaaggatac
     8041 cacctttttc gacagcaccc ctgaaaaccc ctggtggatc aatattgaat tcccacgctt
     8101 tggcggccgc atttacgtga gctacaaaga ccttacacag aacgatttca gcaggctggt
     8161 aaatgacgct ttcaacctta cctacaaaca cacttacaaa gcctcttcca ttgatgattc
     8221 gctgatggtg acgcccaacg gagtacacgg tgtgttcttc aaagtggggg gcaatgccgc
     8281 cacggccaac cagtttttcc tgactgattc ttcgcgaaat tttctgcggg gtgctctcta
     8341 ttttgacgta acgcccaacg aagattcgct gctgccggtg aaccagtttc tactcaagga
     8401 tatggagcac ctcatcaaca cctttaaatg gaagtgagat tccttataat caaatgatct
     8461 ttacatgata gccattgata acaaattagt gagcgacgaa ctggtggagg agcaatttgt
     8521 atgtgacctg ctgaaatgca aaggcggttg ctgcgtggat ggtgatgccg gcgccccatt
     8581 ggaagagtcg gagaagcacc gcatcgatga ggtgtttgaa gcagtgaagc catacttgcc
     8641 tgagcgacac ctggccgaaa tagaaaaaca gggccgctat gtgtacgaca aagaatttgg
     8701 ctgggtgaca cccgccatcg acggtggcat ttgcgtgtac gccatcaccg acagcaaagg
     8761 cattgtaaaa tgcggcatcg agcaggcata caacgatggc aaagtgcaat ggaaaaagcc
     8821 catcagttgt catttgttcc cggtgcgcat caaacccagc aaagacggct cgttggaata
     8881 cgtaaactat gaaccccgcg aaacgctgtg caaacctgcc tgcaaactgg gcaagcagct
     8941 gaaagtgccc gtataccagt ttttgaaaga agcgctggtg cgcaaatacg gacaggagtt
     9001 ttacgatacg cttgatgcgg tggcgcagga ttattttagc gtgaaaaaga aaccttgatg
     9061 gtggctgaaa gaaaagagtg atgtgcaaaa gcgggaaaca agccagcagc attaaaatcg
     9121 gaaaagccag agcaataaga caagcatcaa tagaagcctc tgtaatagga cagcatgccg
     9181 atgaaggaaa caactaccag cgtagcacag tttcactaat accacaaagc ttcctgtggc
     9241 gtatacccat tcaccacaaa cctgtatttg ttgccatact tactaccgcc attgcccctt
     9301 ttggtaaata cggctattgc ccctcctgca ctgcccatac tcgtccagta aaagggcgga
     9361 ctgattactt ttatagcagc tacttcatta gctgctatgg ctagtacacc ctctttatct
     9421 gtttccatgc catctacaaa atacacaggc tcaaaacccc gccagcttac ttcgtagctg
     9481 aagtcgacac ggttattgta aatattgagc ccaggcaccc tacctatcaa aaaatcgaaa
     9541 acagtacctg cagcggctat ggcattatca tccatgccat caaacaaata gccgcggcca
     9601 tcaaatacac cgccctgaaa tttttctacc aatttttcag caggtgtttt cgccttggct
     9661 gtaaacgtta cattttgcaa ggtggcagtt ggctgtaaaa atgatggcga atcaaacgta
     9721 taattggctg tatcgtactg tgcattttca ttgcccactg ccataaaata ggtgcattta
     9781 gccaatggat aaaaagtgga atcaacaggc gtttccaaaa aaatatccag ccagttatcc
     9841 ggcgttttct ttaccggcgt aaacacaaag gttgccttgt tgtctatcat caggttgggc
     9901 agttgaaaca taccggcttc gtccactatc aacgtgccaa tcaggaggtc ctgcccatt
//
LOCUS       DATIQF010000275         1661 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_217011,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000275 DATIQF010000000
VERSION     DATIQF010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217011"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            47..766
                     /locus_tag="VLL95_04475"
     CDS             47..766
                     /locus_tag="VLL95_04475"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSR38145.1"
                     /translation="MSYLQNKTILITGASKGIGRATVLALASHQTNLGLVARSENELE
                     QLKQAVIELGSQCEIFAGSVADESLAQKAVAKMTDRFGKVDVLINNAGYGNSKPFETF
                     TEKEWDDLYATNVKGTFLFSKAVAPLMKQQQSGHIIIIASDVAKRTYPTGSLYCSSKY
                     AQHAFGDAIRKELRPFNVKVSTVYSGLVDSYFHEDPEGDSSHEWWLKNDDMARSIVFI
                     ANQPPHVVIDEFMIHPLKQDY"
     gene            839..1330
                     /locus_tag="VLL95_04480"
     CDS             839..1330
                     /locus_tag="VLL95_04480"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HSR38146.1"
                     /translation="MAELSVKSNDKKKQALRVDLTPMVDLGFLLISFFIFTTTMSTQT
                     MVKLILPADSTDSSKIGATGAVTIIPTGKQLKVYSGNNWQHSTDFAADDFIGIRSHLL
                     QCKKELRQRYGNEEKLFVILKPHASSHFGQLIGLFDELKICDIKRYALSELTKLEESY
                     VLK"
     gene            complement(1322..>1661)
                     /locus_tag="VLL95_04485"
     CDS             complement(1322..>1661)
                     /locus_tag="VLL95_04485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38147.1"
                     /translation="YEPQRVLAEKEPSFVVNPISWRTDKDWVSRKEQKGAVLYRFNKP
                     KASNVGAGIHGNVLWSDKPRFFGNLFFTQKNYHIGDINLFWKDIRDNVYLRVEAYRAR
                     HKSQLSTGSF"
BASE COUNT          462 a          404 c          386 g          409 t
ORIGIN      
        1 aatgaattgc tgcaactgat gcgtgcagcg ggaaaataaa agcctcatga gttacttgca
       61 aaacaaaacc atcctcatca ccggtgccag caaaggcatt ggcagagcca ctgtgctggc
      121 gttggccagc catcaaacca acctgggcct ggtggcaaga agtgaaaacg aacttgaaca
      181 actgaagcag gcagtcatag agctcggcag ccagtgcgag atctttgcgg gatccgtggc
      241 ggatgaaagc ctggcccaaa aagccgtagc caaaatgacc gaccggtttg gcaaggttga
      301 tgtgctcatc aacaacgccg gctatggcaa cagtaagccc tttgaaactt ttactgaaaa
      361 agaatgggac gatctgtacg ctaccaatgt aaaaggcact ttccttttca gcaaagcggt
      421 ggcgcccctc atgaaacaac agcaaagcgg acacatcatc attattgcca gcgatgtggc
      481 caagcgcacc tatcccaccg ggtcgttgta ctgcagcagc aagtatgcgc agcatgcgtt
      541 tggcgatgcc attcgcaaag aacttcgtcc cttcaatgtg aaggtgagca ccgtatacag
      601 tggcttggtc gattcctatt ttcatgaaga tcccgaaggc gacagcagcc atgaatggtg
      661 gttgaaaaat gatgacatgg cccgctccat cgttttcatt gccaatcagc cgccgcatgt
      721 ggtgattgat gaattcatga tccatccact gaaacaggat tattgataac agccggcagt
      781 tgccggcttt tttgtggaaa gttgtgtctc agccatctta aatgcaaaca acacgcttat
      841 ggctgaacta tctgtcaaat ccaatgataa aaagaaacag gccctgcggg tagaccttac
      901 acctatggtc gacctgggat tcctgttgat ctcctttttc attttcacca ctaccatgag
      961 tacgcaaacc atggtgaagc tgatattacc tgccgattca acagactcct caaaaattgg
     1021 ggccactggc gctgttacca ttattcccac aggcaagcaa ttgaaagtat acagtggtaa
     1081 caattggcaa cacagcaccg atttcgctgc tgatgatttc attggtattc gctctcatct
     1141 tttacaatgc aagaaagagt tgcgacagcg ctatggaaac gaagaaaaac tttttgtgat
     1201 cctgaagccg catgccagta gccacttcgg gcaactgatc ggtttgtttg acgaattgaa
     1261 aatctgcgat atcaaacgat atgcactcag cgaactgaca aagctggaag aaagctatgt
     1321 tctaaaatga gccggtactg agttgtgact tgtgcctggc ccgatatgcc tctactctca
     1381 gatacacatt gtcgcggatg tctttccaga aaagattgat gtcgccaatg tgataattct
     1441 tctgcgtaaa aaagagattg ccaaaaaatc gcggcttatc gctccacaat acattgccat
     1501 gaatgccggc acctacgttg ctggctttgg gtttattgaa ccggtacaaa acggcgcctt
     1561 tttgttcctt gcgtgaaacc caatccttat cagtgcgcca gctaatcgga ttcactacaa
     1621 aggatggctc tttttccgcc aacactcttt ggggctcgta t
//
LOCUS       DATIQF010000276         2977 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_201959,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000276 DATIQF010000000
VERSION     DATIQF010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2977
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201959"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..851)
                     /locus_tag="VLL95_04490"
     CDS             complement(<1..851)
                     /locus_tag="VLL95_04490"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HSR38148.1"
                     /translation="MAAKQAKKEVRKNMMHDTLDGRLDFSSLFIDAKGFIPLPFIVTE
                     PALGGFGAAVAPMFLTPKKLPGYKGYIPPDITAGFGMYTVNGSWAAGALRIGSIPKAG
                     IKYRAGFAAIDLNLTFYRDIPQEGEKEFEFTISSLPITGSISKRITKKDLYLGVQYTY
                     AKTKAKPRFEGDIPDFISEEELDNVVAVFGTFLDWDKRNSVFTPDKGGRLHVQYNMSD
                     AWTGSNFSFSQLSGSMNWFVPFQKNWISGLRFEAFQVFGEPPFYALPSLNMRGVPNIR
                     FQGYTTMV"
     gene            complement(1004..2029)
                     /locus_tag="VLL95_04495"
     CDS             complement(1004..2029)
                     /locus_tag="VLL95_04495"
                     /inference="COORDINATES: protein motif:HMM:NF016241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF481 domain-containing protein"
                     /protein_id="HSR38149.1"
                     /translation="MRTYFIASIIAFLAFWSNAFAAAKDSLVLNNKNVIVGEIKQMDK
                     GVLTIETPYSDKDFMVEWYGISEIYSESVFLITLRDGRRYTGRVQSLAGTNRINVVTL
                     DSQLVVVTNRELVYLKAYKSKFWGRTKISIDVGLNISKANNLRQFSSQSSVDYLANKW
                     QLNGFFNSNFSVQDSVEAIKRTEGSVKYAYFLNRDWYWGSSINFLSNTEQALKLRSTV
                     KAGGGKLLLHTNRRMWGAGLGLSLLNETFFNETPSRVSSEVYAGNEVNLFDMGDLNLL
                     STIYVFRSITKENRWRCDFKLDIKYDIFKDFYLKPSISLNYDNRPGEAGRELDYVILF
                     NIGWEFD"
     gene            complement(2274..2657)
                     /locus_tag="VLL95_04500"
     CDS             complement(2274..2657)
                     /locus_tag="VLL95_04500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38150.1"
                     /translation="MKKIILFSTLCLFAAAGAFAQKIKWEDLSKEEKMMKLQAFREDN
                     QKYLKDSLGMNADQLNDIDNVNVCFLSTMERIQRYGKDKVNMQKFAEAVAAERSIQLE
                     AIMGSEKRKQFAQYVEAKMKKAGVM"
     gene            2754..>2977
                     /locus_tag="VLL95_04505"
     CDS             2754..>2977
                     /locus_tag="VLL95_04505"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HSR38151.1"
                     /translation="MKMNGRFIKNSLLLIGCFIYSCIAAQPVPNIVVIVADDLGYGDL
                     GCYGNKTTRTPHLDKMAGNGIRFTQAYAAAP"
BASE COUNT          835 a          681 c          607 g          854 t
ORIGIN      
        1 accattgtag tatatccttg aaaacgaata ttgggcaccc ctctcatatt caaagaaggc
       61 aaggcataaa aaggaggttc tccaaaaacc tggaaagctt caaatcgcaa cccgcttatc
      121 caattcttct gaaatggcac aaaccaattc atggacccgc tcagctggct aaaactgaaa
      181 ttgcttcctg tccaggcatc actcatattg tattgtacat gtaaacgtcc gcccttatca
      241 ggtgtaaaaa cagaattgcg cttgtcccaa tctagaaagg ttccaaaaac agctaccaca
      301 ttgtctaatt cctcttctga aatgaaatcg ggaatatcgc cctcaaagcg tggtttagcc
      361 ttggttttgg catatgtgta ctgcacgccc aaatacaaat cctttttggt aattcttttt
      421 gaaatggatc cggtaatggg caatgatgaa atagtaaact cgaactcctt ttcaccttcc
      481 tggggaatgt cgcgatagaa agtaaggttc aaatcgatag cggcaaatcc ggccctgtat
      541 tttatgcctg ccttgggtat gctgccaatg cgaagtgccc cggcggccca actgccgtta
      601 acggtataca tgccaaagcc agccgtaata tcaggaggaa tatatccttt ataacctggc
      661 aattttttgg gtgtaagaaa catgggtgcc acagctgccc caaatccacc cagtgctggt
      721 tctgtaacaa tgaacggcaa tgggataaat cctttggcat caataaacaa gctgctgaaa
      781 tcgagacgac catcgagggt gtcgtgcatc atgttttttc ttacttcttt ttttgcctgt
      841 ttagctgcca tcgcagaatc gctggtttgc gccaaacctt tggcaaaggc aaaaaataaa
      901 aagaaccatg ctgcccaaaa atgaatgccg accaatctat tccaaatcat atcaagggtg
      961 atataaccct tcaaaggtcg tcatttatga aacccggccc gcatcaatca aattcccagc
     1021 caatattgaa caggatcaca tagtccagtt ccctgcctgc ctcaccaggg cggttatcgt
     1081 agttaagact gatgctaggc ttcaggtaaa aatctttgaa aatatcatac ttgatatcca
     1141 gcttaaaatc acaacgccat cgattttctt tggtaatact tctgaaaacg taaatggtcg
     1201 acaagagatt gagatcaccc atgtcaaaca ggttgacttc atttcctgca tagacttctg
     1261 aacttaccct gctcggagtt tcgttgaaaa aagtttcgtt caaaagtgaa agccccagcc
     1321 cggcccccca cattctccgg ttggtatgga gcaagagctt tccgccacca gctttgacag
     1381 tggaacgcaa tttcaaagcc tgctcagtat tcgataaaaa gttgatggaa cttccccaat
     1441 accaatctct attaagaaag taagcatact tcacgctgcc ttctgtacgc ttaatggctt
     1501 ccacactatc ctgcactgaa aagttagagt tgaaaaaacc attgagctgc cacttgttgg
     1561 cgaggtaatc cactgaactt tgtgaagaaa actggcgtag attattggcc ttggaaatat
     1621 tcaagccaac gtcaatgctg atcttggttc gcccccagaa ctttgatttg tacgctttca
     1681 ggtaaaccaa ttccctgttg gttactacca ccagttgact gtctaaagtc actacattta
     1741 tcctgttagt acctgccagt gattgcaccc tgccggtata ccgacggcca tcacgaaggg
     1801 taatgagaaa aacagattct gaatagattt ctgatatgcc gtaccactca accatgaaat
     1861 ccttgtcgga gtaaggcgtt tctatggtca gcaccccttt gtccatctgc tttatttccc
     1921 ccacaattac attcttattg tttaacacga ggctgtcttt ggcagctgca aaggcattgc
     1981 tccaaaaggc aagaaaggct ataatggaag caatgaaata ggtgcgcaca agattttact
     2041 tgaatagtgg tggattaaaa ataaagatag gattcagctt tggcattaaa agctatcaac
     2101 aggcatacaa tagcagttga agcgccaggt gccggcaaat aatcctgatg cttaggatta
     2161 gtaaaaaaaa tgccttgcat gattttgatg agagtcggtg aggaccattt tctaaatcat
     2221 acaaggcagg ctttggtaat ttttcgtatt cttcagcaac aggaattatg tcattacata
     2281 acccctgcct ttttcatttt ggcttccaca tactgcgcaa attgtttgcg tttttcagaa
     2341 cccatgatcg cttccaattg aatgcttcgt tcagccgcta ctgcttcagc aaacttttgc
     2401 atgttcacct tgtctttgcc atagcgctga atgcgttcca tggtgctcaa aaagcatacg
     2461 tttacattgt caatatcatt gagttgatcg gcattcatgc caagcgaatc tttcaggtat
     2521 ttttggttgt cttcgcgaaa agcctggagc ttcatcattt tttcttcttt gctgagatct
     2581 tcccacttta ttttttgggc gaatgcgcca gcagcagcaa acaggcacaa cgttgagaag
     2641 aggatgattt ttttcatggt atttgtttta aggatggtga aggtagtact gtttttctcc
     2701 tgcagaaatt caaaatattt aatgattagc acatagcttt cctatattga tttatgaaaa
     2761 tgaatggccg cttcatcaag aattcattgt tgttgatcgg gtgcttcatc tattcctgta
     2821 ttgctgcgca acctgtgccc aatatagtgg tgattgtggc cgacgatctg ggctatggcg
     2881 accttgggtg ctatggaaac aaaaccacca ggactccgca cctggacaaa atggccggca
     2941 atggcattcg gtttacgcag gcctacgctg ctgcccc
//
LOCUS       DATIQF010000277         1555 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_201980,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000277 DATIQF010000000
VERSION     DATIQF010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201980"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..740)
                     /locus_tag="VLL95_04510"
     CDS             complement(<1..740)
                     /locus_tag="VLL95_04510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38152.1"
                     /translation="MKNKLYAFFLALTGAFTVSAQNEFGVWASAINLSTNGGSNAQFY
                     NTTALAGDPNAIGSVNFSGNLGTFEIGSSLLVIKGAELKTWKGTNANVCGGKLNYRVF
                     PKGAASGPFTQVNIGFKSDCNGAVFADGLGACKDRDQKWSTTNANDIISIPATPGTYV
                     LEIYYEISGQAGGTTLCNDTRYESGGGSNFSAEFTVTSVLPVRLLDFSGRKQTQGVSL
                     SWNTASEENFRHFIVEHSQDGIHFNAVGT"
     gene            complement(807..1154)
                     /locus_tag="VLL95_04515"
     CDS             complement(807..1154)
                     /locus_tag="VLL95_04515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38153.1"
                     /translation="MNEGEIVEEFHGAGYLPGIFLYFFNQLVAHQNHQWPYSFSTEGK
                     KIAIGIVQACRLCRKMILGESLGKLAGKLLETLHRMLAVGFTGLSGFQNRWCKIGENG
                     SSSFFWTNCTQSY"
     gene            1122..>1555
                     /locus_tag="VLL95_04520"
     CDS             1122..>1555
                     /locus_tag="VLL95_04520"
                     /inference="COORDINATES: protein motif:HMM:NF012568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HSR38154.1"
                     /translation="MELFHNFTLIHDDIMDAAALRRGMPTIHQQYGTSTAILAGDVML
                     IRAYEYLNTISRDISRPVIALFNKTAAEVCEGQQLDMDFEGKELVSLDEYINMIRLKT
                     SVLLAASLKMGAIIGGAGKGNQDHLYAFGENLGIAFQIQDDYL"
BASE COUNT          433 a          375 c          345 g          402 t
ORIGIN      
        1 gtacctacag cattgaaatg aataccatct tggctatgct caacaataaa gtgcctgaaa
       61 ttctcttcac tggcggtatt ccatgacaag gatacaccct gtgtttgctt tctgccggaa
      121 aaatcgagca atcgcacagg caacacagat gttacagtaa attcagcact gaaattactg
      181 ccgccgccgc tctcatacct tgtgtcattg caaagtgtag ttcctcctgc ctgtccgctg
      241 atttcataat agatttcgag tacatatgtt ccaggggttg cagggatgga aattatatcg
      301 ttggcattgg ttgtcgacca tttttgatcc ctgtccttac aagctcccaa tccgtctgca
      361 aatacggcac cattacagtc gcttttgaag ccaatgttta cctgcgtaaa aggcccagaa
      421 gccgcacctt tcggaaatac ccggtagttg agtttgccgc cgcaaacatt cgcattggtg
      481 cccttccatg ttttcaattc tgctcctttg atcaccagga gactgcttcc aatttcaaag
      541 gtgcccaggt ttcctgaaaa attaactgaa ccaatggcat tgggatcgcc agccagagcg
      601 gtagtgttgt aaaactgggc attagaaccg ccgttggtcg aaagattaat ggcactggcc
      661 catacaccaa attcattttg tgctgaaact gtaaaagcgc ctgtaagggc aagaaaaaaa
      721 gcgtaaagtt tgtttttcat aagcaatagg atctggtgat tgcaaataag gaaaagtttt
      781 tcaaaatacc atgtaaggtt tacacattaa tagctttggg tacaatttgt ccagaaaaag
      841 ctagatgaac cattttcgcc tattttgcac cacctgtttt gaaaaccgga taagccggta
      901 aaaccaactg ctaacattcg atgcaaagtc tcgagcaact ttccagccaa tttgcccaac
      961 gattcaccaa ggatcatttt ccggcacagc ctgcaagcct gtacgatccc aatcgctatt
     1021 ttctttccct cggtggaaaa cgaataaggc cattgatggt tctgatgggc aactaactgg
     1081 ttgaagaaat aaaggaagat gcctggcagg tagcctgcgc cgtggaactc ttccacaatt
     1141 tcaccctcat tcatgacgac attatggatg ccgccgcttt gcgccgtggc atgcccacca
     1201 ttcaccagca atacggcacc agcacggcta tcctggcagg cgacgtaatg ctcataagag
     1261 cctacgaata cctgaacacg atcagccgcg acatcagcag gcctgttatt gccctgttca
     1321 acaaaacagc cgcggaagtt tgtgaagggc agcaactcga catggatttt gagggaaaag
     1381 aactggtgag cctggatgaa tacatcaata tgatacggct caagacttcg gtgttgctgg
     1441 cagccagttt aaaaatgggc gccatcattg gtggagccgg caaaggaaac caggatcact
     1501 tgtatgcctt tggtgaaaat cttggcatcg ctttccagat acaggacgat tacct
//
LOCUS       DATIQF010000278         1876 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_126016,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000278 DATIQF010000000
VERSION     DATIQF010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1876
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126016"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..693
                     /gene="ispE"
                     /locus_tag="VLL95_04525"
     CDS             <1..693
                     /gene="ispE"
                     /locus_tag="VLL95_04525"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: protein motif:HMM:TIGR00154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HSR38155.1"
                     /translation="TGHEDSFSQTGLPIAGDASGNLCVKALQLVRSQFPDLPAVKLHL
                     HKAIPMGAGLGGGSSDGAHTLLLLNKKFSLGLSTSTLIEMALQLGSDCPFFIENKTCF
                     AWSRGEMMEPLELDLKGFTLLLINPGIHVSTPWAFSQITPRLPEFSLKELSSFPLERW
                     KELVVNDFQEPVAKHHPAIDSIIQTCYGAGALYAAMSGSGSTCFALFKPGVSIPEIPA
                     FQSYWVKQINLS"
     gene            755..>1876
                     /gene="mgtE"
                     /locus_tag="VLL95_04530"
     CDS             755..>1876
                     /gene="mgtE"
                     /locus_tag="VLL95_04530"
                     /inference="COORDINATES: protein motif:HMM:TIGR00400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HSR38156.1"
                     /translation="MSEELQQELEQEVSLTEQFTSLIADGDKIAIADFLNSQNISDVA
                     NLIYEFEEYEAQIIASLSIHRAASVFKILDLAEQKRIISELPPFKTAELLNELSADDR
                     TDFLEELPSNVVRELIKLLNPEERKTTLSLLGYPDNSVGRLMTPDYVYVYENNTVAEA
                     IETIRRFGKDSETIDVIYVIDKDGNLVDDIKIRDIILSSPDKKINELIDGRVIVLYAD
                     DDQEVASDVFKMNNRVALPVVSRSEKLLGIVTIDDILWVATEEYSEDMQKIGGTEALD
                     EPYLDTSVFNLFRKRIGWLVILFLGEMLTASVMQYFEEEIAKAVVLALFIPLIISSGG
                     NTGSQDSTLIIQALATGDVSISDWWRILKREILSGILLGS"
BASE COUNT          491 a          445 c          462 g          478 t
ORIGIN      
        1 acggggcacg aagacagttt ttcccaaaca ggtcttccca ttgccggcga tgcatccggc
       61 aacctttgtg tcaaggccct tcaattggtg cgcagtcaat tccccgatct gcctgcagta
      121 aagctccacc tgcacaaagc cattcccatg ggagcgggcc tgggtggtgg cagcagcgat
      181 ggcgctcata cacttttgct gctcaacaaa aaattcagcc ttggcctttc cacttcaaca
      241 ctgattgaaa tggcgctgca acttggcagc gattgtccat ttttcataga aaacaaaacc
      301 tgctttgcct ggagccgggg cgaaatgatg gaacccctcg aacttgacct gaagggcttc
      361 acattgctat tgataaatcc tgggatccat gtcagtaccc cttgggcctt ttcacaaatc
      421 acgccacgcc tccccgagtt ttcgctgaag gaattgagtt cttttcctct agagcgttgg
      481 aaagaattgg tggtgaatga ttttcaggaa ccagttgcaa agcaccatcc tgctattgat
      541 tccatcattc aaacctgcta tggtgccggt gcattgtatg cggccatgag cggcagtggc
      601 agcacctgct ttgcactttt caaacccggt gtttccattc ctgaaatccc ggctttccaa
      661 tcttactggg tcaagcagat taatctttct taaacagtat tgttgcttgg atgggaacgg
      721 caggagattg tgtcttagcc attaacttta tcgcatgtcc gaagagttgc aacaagaact
      781 ggaacaggaa gtttcactca ctgagcagtt tacaagcttg attgccgatg gcgataaaat
      841 tgccatcgct gattttctga atagccagaa catcagcgat gtggccaatc ttatctatga
      901 gtttgaagag tatgaagcgc agatcatagc cagcctttcc attcatcggg cagcgagtgt
      961 tttcaagatc cttgatctcg cggaacaaaa acggatcatc agcgaattgc cccctttcaa
     1021 gacagcagaa ttactgaatg aactaagcgc cgatgaccgg acggactttt tggaagagtt
     1081 gcccagcaac gtagttcgtg aactgatcaa gttgctgaat ccggaggaac gcaaaacaac
     1141 attgagtttg ctgggatacc cggacaactc ggtgggacgc ctgatgacgc cagactacgt
     1201 gtatgtatac gaaaacaaca cggtggctga ggccatagaa accatccgcc ggtttggaaa
     1261 agactcggaa acgatcgacg tcatttatgt gatagacaag gatggaaacc tggtggatga
     1321 catcaagatc agggacatca tcctttcttc acccgacaaa aaaataaatg aactcattga
     1381 tggccgtgta atagtgctgt atgccgatga tgaccaggaa gtggccagcg atgtatttaa
     1441 aatgaacaac cgggtagcct tgcccgtggt aagccggtct gaaaaattat tgggcattgt
     1501 aaccatcgat gatattcttt gggtagctac tgaagagtac agcgaggaca tgcaaaagat
     1561 tggtggtacc gaggcactcg acgaacccta tctcgacacc tctgttttca acctgtttcg
     1621 caagcgaatt ggctggctgg tgatactttt tctcggcgag atgcttacgg cttccgttat
     1681 gcaatacttc gaagaagaaa ttgccaaagc cgttgtgctg gctcttttca ttccactgat
     1741 catcagtagt ggcggtaata caggtagcca ggacagtaca ctcatcatac aggcgctggc
     1801 caccggcgat gtgagcatta gtgactggtg gcgcatattg aaacgtgaaa tcctgagcgg
     1861 tattctgttg ggctcc
//
LOCUS       DATIQF010000279         5833 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_262826,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000279 DATIQF010000000
VERSION     DATIQF010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5833
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262826"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1541)
                     /gene="ccsA"
                     /locus_tag="VLL95_04535"
     CDS             complement(<1..1541)
                     /gene="ccsA"
                     /locus_tag="VLL95_04535"
                     /inference="COORDINATES: protein motif:HMM:NF013725.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HSR38157.1"
                     /translation="MFLFFSHFSNNGLPKRLMAEAANPVLLPGAKKAHHLFIAMNYVG
                     EHLLPGQIGHFLVILSLVSSAVATIAFYFSFKSTDLNNRDNWKRLARMAFAIETISVF
                     GIFLALYYIISNHLFEYKYAWQHSSKSLQVEYLLSCFWEGQEGSFMLWSFWHCILGWL
                     LIAKAGKWEGPVMTVVSFAQFALATMILGIYFFGFKVGSSPFVLLRNEMEAPIFSQPN
                     YLEFVKDGNGLNALLQNYWMVIHPPILFLGFASTLVPFAYAIGGLLTRDHEGWTAPAL
                     PWASFSAAVLGLGIMMGAAWAYESLTFGGYWAWDPVENASLVPWLVLVSGLHTNLIFK
                     STGYSLRSTYLFYILSFLLVLYSTFLTRSGVLGDTSVHAFTDLGMNFQLLAFIGVFLV
                     PAFWMFGRQFKTIPSIQKEENLYSREFWMFIGALVFFFSGLLIIGKTSLPVINKIFGS
                     KIAPPEDVEFSHNQIQIWVAIIAGLLTAITQYLRYKDTPKKTFYSKLLWPTAISLAAS
                     LAFSFL"
     gene            complement(1744..2265)
                     /locus_tag="VLL95_04540"
     CDS             complement(1744..2265)
                     /locus_tag="VLL95_04540"
                     /inference="COORDINATES: protein motif:HMM:NF017758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HSR38158.1"
                     /translation="MPDKNATLINLHQLLDYDARRFTSAEIQLSRVLPDWINKAYNLK
                     LKSILQRYLEMVNDHVKKLEEFIAAEEIYSLTLRNRIIQAFIEETNEKVAECADMEVR
                     DAALLECIQAMNHFKIASYGTATAFANELGKERAASIFHEIEVNEKQIDDRLSQLAEH
                     EINPRAKVHIIME"
     gene            2455..2646
                     /locus_tag="VLL95_04545"
     CDS             2455..2646
                     /locus_tag="VLL95_04545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38159.1"
                     /translation="MATPKKYPTPPPDFPSPEKHPEAPKPVDPEDPLVPEEEDPDYIP
                     DEEPDTLPPFEVPPPGEGP"
     gene            complement(2662..3375)
                     /locus_tag="VLL95_04550"
     CDS             complement(2662..3375)
                     /locus_tag="VLL95_04550"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HSR38160.1"
                     /translation="MYITELQAKRRIWVYLPDDYAISGKRYPVLYMQDGQNLFDAASS
                     FSGEWGVDEYLDSISGAGIVVGIDNGGDTRINEYNPNDNEEFGKGLGKEYLLRVVEIL
                     KPFVDERFRTLPDAHHTAIAGSSMGGLISFYAGLYYPDVFGAVGVFSPSFWIVEDLQA
                     QLKKLAGNGYSDQHYFFYGGEQEEEEMTKRLQEVRKIMETKLKAKVAICLNEKGTHSE
                     WAWRKVFPEFYTWWQKIFQ"
     gene            complement(3392..5491)
                     /gene="glgX"
                     /locus_tag="VLL95_04555"
     CDS             complement(3392..5491)
                     /gene="glgX"
                     /locus_tag="VLL95_04555"
                     /inference="COORDINATES: protein motif:HMM:TIGR02100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004133 - glycogen debranching enzyme
                     activity [Evidence IEA];
                     GO_process: GO:0005980 - glycogen catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HSR38161.1"
                     /translation="MSQHKKAPVKFAVLPGKAAPQGATMLDDAVNFSLFSKNATAVDL
                     VFFDAADDIEPAAVFSLQPPVHKTYHYWHIAIRSVKVGQLYAWRVSGPNEPQNGHRFD
                     QDKFLLDPYSKAIITPKAYQRKAFCREGKVSLPCLKSAVIDLGKFDWEGDGLLRRPFA
                     KTIIYEMHVAGFTRHPNSGLSDERRGTYAGLIEKIPYLVELGITAIELLPVFQFDAQD
                     APEGKENYWGYSPISFFAPHMAYASASDPMEAINEFREMVKACHKAGIEVILDVVFNH
                     TSEGNEDGPCYCFRGIDNSMYYILEKDKRNYANFTGTGNTLNANHPIVRRMIVESLHY
                     WVEEMHIDGFRFDLASILARDEKGHPLENPPVLWDIESDPHLAGVKLIAEAWDAAGLY
                     QVGNFIGDSWKEWNGRFRDDVRSALKGDSGKLSGLASRLLGSPDIYGHEEREPEQSIN
                     FVACHDGFTLNDVVCYNQKHNEANGEDNRDGSNDNLSWNCGVEGPTDDPGIEALRSRQ
                     VKNFLTLTLMAIGTPMILMGDEVRRTQLGNNNAYCQDNELSWFDWSLLQKHADLFAFV
                     KKLIRVRLQRDTSNMLRSLSLNELLGSADIQWHGIKLNQPDWSHASRSIAFTIYSMQR
                     KVVMHFMINAWQEDLLFELPPPAAYGGQWLRWLDTSLSHPDDLMEWSNAVVVDEAAYQ
                     VRSWSMAAMLCIVKEKK"
     gene            complement(5493..>5833)
                     /locus_tag="VLL95_04560"
     CDS             complement(5493..>5833)
                     /locus_tag="VLL95_04560"
                     /inference="COORDINATES: protein motif:HMM:NF012563.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008184 - glycogen phosphorylase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan phosphorylase"
                     /protein_id="HSR38162.1"
                     /translation="AFEPIVSSLLNQDPYLVLADFESYRKCQEQVSQTYLDQDLWTMK
                     SILNVARMGYFSSDRSIRDYCKLVWQINPGGASAKSVKTDTKQRKASVKETKTVKVTS
                     TTKRKTTVKK"
BASE COUNT         1493 a         1501 c         1359 g         1480 t
ORIGIN      
        1 aggaaactga atgcaaggct ggcagccaag ctgatggcgg ttggccaaag caacttgctg
       61 taaaaagtct ttttgggtgt gtccttgtag cgcaggtatt gcgtgatggc cgttagcaac
      121 ccagcaatga tggctaccca aatctggatt tggttgtgac tgaattcaac atcctccgga
      181 ggcgctattt tgctaccgaa gatcttattg atcacaggca atgaagtttt gccgattatc
      241 agcagaccgg agaaaaagaa aaccagcgcc ccaataaaca tccagaactc acggctgtac
      301 aggttttcct ctttctgaat agatggaatg gtcttgaact gccggccgaa catccagaat
      361 gcaggcacca ggaacacgcc gataaatgcc aacaattgga aattcatgcc gaggtcggta
      421 aaggcatgca ccgaagtatc gcccagcaca ccgcttcggg taaggaaggt gctgtacaac
      481 accagcaaaa aggaaaggat gtaaaaaagg taggttgacc ggagtgaata cccggtgctt
      541 ttgaagataa gattggtatg caagccgctg accagcacca accagggtac aaggctggca
      601 ttttcaacag ggtcccaagc ccagtagccg ccaaacgtga ggctttcata ggcccaggcc
      661 gctcccatca tgatgccaag ccccagcacg gctgcactga acgatgccca gggcaaggcc
      721 ggcgcagtcc aaccctcatg atcccgggta agcaacccgc caatggcata tgcaaaagga
      781 accagggtgc tggcaaatcc caggaaaaga atggggggat gtatcaccat ccagtaattc
      841 tgcaagaggg cattcaggcc attgccgtcc tttacaaatt cgaggtaatt gggctggctg
      901 aagatgggcg cttccatttc gttgcgcagc agtacaaagg ggctgcttcc caccttgaaa
      961 ccgaagaaat agatacccag gatcatagta gccagggcga attgagcaaa gcttaccact
     1021 gtcatcaccg gaccttccca tttgccggct ttggctatga gcagccagcc caatatgcaa
     1081 tgccagaagc tccagagcat gaagctgccc tcctgccctt cccaaaaaca actcagcaaa
     1141 tattccacct gcaggctctt gctgctgtgc tgccaggcat atttgtactc aaacaaatgg
     1201 ttgctgatga tataatagag cgctaagaaa atcccgaaaa ccgaaatggt ctcaatagca
     1261 aacgccatcc tggccagacg tttccaattg tcccggttat tcaggtcggt cgacttgaag
     1321 gagaaataga aagcgatggt agccaccgcc gaagaaacca gtgaaagaat caccaggaaa
     1381 tggccaattt gtcccggaag caaatgttcg cctacgtaat tcatagcaat aaataaatgg
     1441 tgcgcctttt tagcgccggg caaaagtacg gggttggcag cctcagccat caaacgttta
     1501 ggaagcccgt tgttggagaa atgcgaaaaa aagagaaaca tcttccggga tttccatcac
     1561 cctttacatt gtaccgggtg actttgcctg ttcacgggcc ctttgatgtt ggaaaggcat
     1621 tgccaggaag ggcaaaacaa aacccgacag gcgttatacc tgtcgggctg tatttaaggg
     1681 ttgggttttg tggaaaggag ttgcgaattc gaaaccaatc aactgtctgt gcaggtaaaa
     1741 ctcctattcc ataataatgt gcaccttggc tcttgggtta atttcatgtt ctgccaactg
     1801 cgacagacga tcgtctatct gcttttcatt tacttcaatt tcgtggaaaa tagaggcggc
     1861 cctttcttta cctagttcgt tggcaaaagc cgtagccgtt ccataggatg cgatcttgaa
     1921 atggttcatc gcctggatgc attccagcag ggcggcatct cgtacttcca tatcggcgca
     1981 ttcggcaacc ttttcattcg tttcctcaat gaaagcctgg attatcctgt tgcgcaaggt
     2041 gagggaataa atttcttctg ctgcaatgaa ctcctccagc tttttcacat ggtcatttac
     2101 catttcgagg tagcgttgca ggatactttt caacttcaga ttatacgcct tgttgatcca
     2161 atcgggcaat acccgtgaca gttggatttc agcactggtg aaacgtctgg catcataatc
     2221 gagcagttga tgaagattga tcagggtagc atttttatct ggcatggcaa tactttttgt
     2281 tgattcaagc tatccataat gttcataaat taagttgaca ttcatcaccg gtaaattgcg
     2341 ggtaattgag taccttttga aaagcataat gtacaacaaa cactaagcga aaagctgaat
     2401 aaaaattgtt cagttttttc cctgcaaaac ctggcaaacc aaaaaaccgg acctatggca
     2461 actcccaaaa aatatcctac gccaccgcca gatttcccat cgccggaaaa gcatcctgag
     2521 gcgccaaaac ctgttgaccc ggaagacccg ttggtgcctg aagaagaaga tccggactat
     2581 attcctgatg aggaaccaga cacattgccg cccttcgaag tgccgcctcc tggagaaggt
     2641 ccataatgct gtccggaaga attattgaaa tattttctgc caccaggtat aaaattcagg
     2701 aaacactttg cgccaggccc attccgaatg agtgcccttt tcatttaggc aaatggcaac
     2761 ctttgccttc aattttgttt ccattatttt cctgacctct tgtagtcttt tcgtcatttc
     2821 ctcttcctcc tgctctcccc cataaaaaaa atagtgctgg tcactataac cattgccggc
     2881 aagctttttc agttgtgcct gcaaatcctc tacaatccag aatgaaggag aaaatacacc
     2941 cacggcacca aaaacatcgg gatagtaaag accagcataa aaagagatca gccctcccat
     3001 gctgctgccg gcaatagcag tatgatgagc gtcgggtagc gtccggaatc gctcatctac
     3061 aaagggtttc aggatctcca ccaccctgag caagtattcc tttcccagtc ctttgccaaa
     3121 ctcttcatta tcgtttgggt tgtattcatt gatcctggta tcgcctccat tgtcaatacc
     3181 caccacgatt cccgctcctg aaatactgtc aaggtattca tccactcccc attcacctga
     3241 aaaggaagaa gcggcatcaa agagattctg gccatcctgc atgtaaagca ccgggtagcg
     3301 ctttccactg atggcataat cgtcgggcag gtatacccat attctgcgct ttgcctgcaa
     3361 ttcggttatg tacatgctgg tatatatcgc ttcatttttt ctccttcaca atacacagca
     3421 tggctgccat tgaccaggag cgcacctggt atgcagcttc atcaaccacc acagcattgc
     3481 tccactccat tagatcgtcg gggtgagaca acgaagtatc caaccaccgc aaccattggc
     3541 cgccataagc agccggcggg ggcaactcaa aaagcagatc ttcctgccag gcattgatca
     3601 taaaatgcat cactactttg cgctgcattg aatagatcgt gaaggcaatg cttcgcgacg
     3661 cgtggctcca gtcgggctga ttcagtttga tgccatgcca ttgtatatct gccgatccca
     3721 gcaattcgtt caggctaagc gaccgcagca tgtttgaggt gtcgcgctgc aaacgaaccc
     3781 tgatcaactt ttttacaaag gcgaataagt ctgcatgctt ttgcagcaaa ctccagtcaa
     3841 accacgacag ttcgttatcc tggcagtagg cgttgttgtt gcccagttgg gtacgcctta
     3901 cttcatcacc catcagtatc atgggtgtgc cgatggccat caatgtaagt gtcaggaaat
     3961 tcttgacctg cctgctgcgc agcgcctcaa tcccagggtc atccgtgggt ccttccaccc
     4021 cgcaattcca actcaggttg tcgttgctgc catcgcggtt gtcctcgcca tttgcttcgt
     4081 tgtgtttctg gttgtagcac accacatcgt tgagggtgaa tccatcgtgg caggccacga
     4141 aattgatgct ttgctcgggt tccctttctt cgtgcccgta aatgtcgggg ctgcccaaca
     4201 ggcgtgacgc gaggcccgaa agcttgcccg aatcgccttt taatgccgaa cggacatcgt
     4261 cgcggaagcg gccgttccac tctttccagc tatcaccaat aaaattaccc acctggtaca
     4321 aaccggcggc atcccacgct tcggcaatca gcttcacacc agccaggtgc ggatcacttt
     4381 caatatccca tagcactggc gggttctcca atggatgccc tttttcgtca cgggccagga
     4441 tggatgccag gtcgaaacga aatccatcga tatgcatttc ttccacccag taatggagac
     4501 tctccacaat catgcggcgt acgatgggat gattggcatt gagcgtattg cccgttccgg
     4561 tgaagttggc ataattgcgc ttgtccttct ccaggatata atacatgctg ttgtcaatgc
     4621 cacgaaaaca atagcagggc ccatcttcat ttccttcgga agtgtggttg aataccacat
     4681 ccaggatcac ttcaatgcct gctttatggc aggccttcac catttccctg aattcattga
     4741 tcgcttccat cgggtcgctg gcagatgcat aagccatatg cggcgcgaaa aatgaaatgg
     4801 gactgtagcc ccagtaattc tctttgcctt caggtgcatc ctgcgcatcg aactggaaca
     4861 cgggaagcag ttcaatggct gtgatgccca actccacgag gtatggaatt ttctcaatga
     4921 gccctgcata ggtgcccctg cgttcatccg acaacccact gttgggatgg cgggtgaagc
     4981 cggccacgtg catttcgtag ataatggttt ttgcgaatgg cctccgcagt agtccatctc
     5041 cttcccagtc aaatttgcca aggtcgatca ctgcactttt gaggcatggc aaactgacct
     5101 tcccctccct gcaaaaagct ttgcgctggt aagccttggg cgttattatg gccttgctgt
     5161 atgggtcaag cagaaattta tcctggtcaa aacgatgccc attttgcggc tcgttggggc
     5221 cagaaactct ccacgcatac agttggccaa cctttacact cctaatggcg atatgccaat
     5281 agtggtaggt tttgtgaacc ggtggctgca atgaaaaaac agcagcaggt tcaatatcat
     5341 ctgccgcatc aaagaatacg agatcgacag cagtggcatt cttcgagaac aaactgaaat
     5401 tgactgcatc atccagcata gtagccccct gtggcgctgc cttgccgggc aaaacagcaa
     5461 acttcacggg tgctttttta tgttggctca tgttactttt ttaccgtggt ttttcttttg
     5521 gtggttgacg tcaccttcac cgttttggtt tctttcacgg atgctttcct ctgtttggtg
     5581 tcagttttca cgctttttgc acttgcgcca ccggggttta tttgccaaac cagcttacag
     5641 tagtcacgaa tggaccgatc agaagagaaa taacccatcc gggccacgtt gagtatggat
     5701 ttcatagtcc acaagtcctg gtcgagataa gtttgcgata cttgttcctg gcatttgcgg
     5761 tatgactcaa aatcggcgag caccaggtaa ggatcctggt tgagcaagga actcacgatc
     5821 ggttcgaagg ctg
//
LOCUS       DATIQF010000280         2969 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_80293, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000280 DATIQF010000000
VERSION     DATIQF010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2969)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2969)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2969
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80293"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..451)
                     /locus_tag="VLL95_04565"
     CDS             complement(<1..451)
                     /locus_tag="VLL95_04565"
                     /inference="COORDINATES: protein motif:HMM:NF013106.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HSR38163.1"
                     /translation="MKNFFRILKRVLLYLVLAQFLYILYVWFLPPPVTLTQIQSLLTG
                     HGLHKTWVSYDNISPNAPLAVMAAEDQLFPDHNGFDWKSIEKAMAYNKRKPGRVRGAS
                     TLSQQVAKNVFLWQGRSWVRKGFEVYFTFMIETLYSKKRILELYLNVA"
     gene            complement(504..1031)
                     /locus_tag="VLL95_04570"
     CDS             complement(504..1031)
                     /locus_tag="VLL95_04570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38164.1"
                     /translation="MYLLLPGLLSAQATALLLKKNGKTVERYYPGNHFTFYTTDNLPV
                     QGQLERIERDSLFMVYYQVVQVPTQFGTMRIDTSGMYELRYSLANVGALPRRAKGKAG
                     LKGLLSGAMLLGGAGYTVVNIVNTVREGDPPFGKDNIDNVLIGLGVAAGGYILGRAGP
                     DRYTLGGKYTLEVIK"
     gene            complement(1179..1814)
                     /locus_tag="VLL95_04575"
     CDS             complement(1179..1814)
                     /locus_tag="VLL95_04575"
                     /inference="COORDINATES: protein motif:HMM:NF013933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HSR38165.1"
                     /translation="MTEALIKGLGLGLLLSVSAGPVVFAILKISMKMGHKAGYAFVAG
                     VSVSDIVLVLLGNVAAELVRMALVYETWIAAGGAIILVAMGTYSLFFGKDPRDDDPND
                     MRLAFRKRDMARFTLQGFFMNTVNPGPIFFWLTTCTAFAFLPLYDRMVLFSTCLATIL
                     AIDIIKVYFANRIRRLLTPATLHKIHQFSAIVLIGFGLFIVLGLFYSRFKS"
     gene            complement(1830..>2969)
                     /locus_tag="VLL95_04580"
     CDS             complement(1830..>2969)
                     /locus_tag="VLL95_04580"
                     /inference="COORDINATES: protein motif:HMM:NF015291.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GH3 auxin-responsive promoter family protein"
                     /protein_id="HSR38166.1"
                     /translation="VNFGALPKGWLMLGGSTELQKGPTYYAGDLSGIQQKNIPFWFQR
                     LYKPGKKIARERDWATKIEEIVENAPNWDIGFIVGVPAWLQLCIEKIIERYQLKNIHE
                     LWPNLSFYVHGGVALEPYKKGFEKLLGKPITYIETYLASEGFLAYQSRQHAKGMKLAL
                     NNNIFFEFVPFDDKNFDHDGNLLPEAEALMIHEVEEGKDYAILISTNAGAWRYLIGDT
                     VRFVDLAHYEVIITGRTKHFLSLVGEHLSVENMNRAIQAVADDTNICLPEFTVAGIPY
                     NNFFAHHWFIACDDPVDEALLRTRLDEKLKELNDDYAVERRHALKEVFVTVLPEHAFI
                     DFLASKGKIGSQNKFPRVLKGKMLTDWEAFLKSHNIRVAQIIKAV"
BASE COUNT          708 a          753 c          797 g          711 t
ORIGIN      
        1 cggctacgtt gaggtacagt tccaaaatgc gctttttgct gtagagcgtt tcaatcataa
       61 aagtgaaata cacttcgaat cccttgcgga cccaactgcg gccctgccag agaaaaacat
      121 ttttggccac ctgctggctg agggtgctgg cgccacgcac cctgccgggt ttgcgtttgt
      181 tgtaagccat ggctttttca atgctcttcc agtcgaagcc attgtggtcg ggaaagagct
      241 ggtcttcggc ggccattacg gccagcggtg cgttaggact gatgttgtcg tacgacaccc
      301 atgtcttgtg caatccatgc ccggtaagca aactttgtat ttgcgtgagt gtaaccggtg
      361 gaggcaaaaa ccatacatac aagatgtaga gaaactgtgc cagtacgagg taaagcagca
      421 cacgcttcag aatgcggaag aagtttttca taaatgctat agccggcaaa ataggaaact
      481 aagcaattgc tgcagacaca gcatcatttt atcacttcaa gggtgtactt gccgcccagg
      541 gtgtaacggt cgggcccggc acgtcccaat atataaccgc cggctgccac cccgagaccg
      601 atgagcacat tgtcgatatt gtctttgcca aaaggcggat caccttcgcg aacagtgttc
      661 acaatattga ccacggtata accagcacca cccaacaaca tggctcccga aagcagccct
      721 ttgaggccgg cttttccttt tgcccgccgg ggcagcgccc ccacattggc aaggctgtag
      781 cgcagttcgt acatgccgga tgtatcgatg cgcatggtac caaattgagt gggtacctgc
      841 accacctggt aatagaccat gaacagcgag tcgcgttcaa ttctttcgag ctggccttgt
      901 accggcaggt tgtcggtggt gtaaaaagta aaatgattgc cggggtaata gcgctccacg
      961 gttttgccgt ttttcttcag cagcaatgcc gtggcctgtg cagaaaggag gccggggagc
     1021 agcaggtaca ataaaaggat ggtggtgggc ttcactcttc aaacatacac ctgatgacgc
     1081 aagatggatg aaaaaatcag gcaggattcc agggaatatc cctttgaatt actggcgcct
     1141 aacgctggtg tgtcgggcac tgcagagctg atgcgacact acgacttgaa gcggctgtaa
     1201 aacaatccca gcacaatgaa caagccaaac ccgatgagca cgatggcgct gaactggtgg
     1261 atcttgtgga gggtggccgg tgtgagcaac ctgcggatgc ggttggcgaa atacactttg
     1321 atgatatcga tggcgagtat ggtggccagg caggtgctga acagtaccat gcggtcgtac
     1381 aacggcagaa atgcaaaggc cgtgcaggtg gtgagccaga aaaaaatagg accgggattg
     1441 accgtgttca tgaaaaaacc ctgcagcgta aagcgggcca tgtcgcgttt gcggaaggcc
     1501 agccgcatgt cgttgggatc gtcatcgcgg gggtctttgc caaaaaagag actgtaggta
     1561 cccatggcca ccagtatgat tgccccgccg gctgcaatcc atgtttcgta taccagggcc
     1621 attcgcacca actcagcggc cacgttgccc agcaatacca gcacaatatc actcacactt
     1681 actcctgcca caaaagcata gccggctttg tgtcccattt tcatgctgat cttcaggatg
     1741 gcgaaaacca ccgggccggc cgataccgat aatagcaggc ccagtcccaa tccttttatc
     1801 agcgcttcgg tcataacggt gcagtcggct tatacagctt ttatgatttg tgctactcgt
     1861 atgttgtgcg atttgagaaa ggcttcccag tcggtaagca tcttaccctt gagcacccgg
     1921 ggaaacttgt tttgcgaacc gatttttcct ttgctggcca ggaaatcgat gaatgcatgt
     1981 tcgggcagca ccgtcacgaa aacttccttc aaggcatgcc tgcgttccac ggcgtaatcg
     2041 tcgttgagct ccttcaattt ttcatccagc cgggtacgca gcagcgcttc atccaccggg
     2101 tcgtcgcagg caatgaacca gtggtgggca aagaaattat tgtaggggat gccggcaaca
     2161 gtgaattcag gcaggcaaat gtttgtgtca tcggccacgg cctggatggc gcggttcatg
     2221 ttttccacgc tgaggtgctc gcctaccaaa ctcaggaaat gcttggtgcg accggtgatg
     2281 atgacttcat aatgtgccag gtcaacaaaa cggacggtgt caccaataag atagcgccac
     2341 gcaccggcat tggtgctgat gaggatggcg taatcttttc cctcttccac ttcgtgtatc
     2401 atcagcgctt cggcctcggg cagcaggttg ccatcgtggt cgaaattctt gtcgtcgaag
     2461 ggtacgaatt cgaagaagat attgttgttg agcgccagct tcataccctt ggcatgctgc
     2521 ctgctctggt aggccaggaa gccttcgctg gccaggtagg tttctatgta agtgatgggt
     2581 ttgcccagca gcttttcaaa tccctttttg tagggctcga gtgctacgcc accatgcaca
     2641 taaaagctga ggttgggcca caactcgtgt atattcttga gctggtaacg ttcaatgatc
     2701 ttttcgatgc acaactgcag ccaggcagga acgccaacaa taaaaccgat atcccagttg
     2761 ggcgcatttt ctacgatctc ttctattttg gtggcccagt cgcgttcacg ggcaattttc
     2821 ttgccgggct tgtaaagacg ctgaaaccag aacgggatat ttttttgctg aatgccgctg
     2881 agatcgccgg catagtaggt cggtcctttt tgcaattcgg tacttcctcc cagcatgagc
     2941 cagcctttgg gcaaggcgcc aaagttcac
//
LOCUS       DATIQF010000281         2478 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_156465,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000281 DATIQF010000000
VERSION     DATIQF010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156465"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            230..928
                     /locus_tag="VLL95_04585"
     CDS             230..928
                     /locus_tag="VLL95_04585"
                     /inference="COORDINATES: protein motif:HMM:NF014228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacylase"
                     /protein_id="HSR38167.1"
                     /translation="MAAKQHLLVLTGAGISAESGLKTFRDSEDGLWNGYDIEDVATPG
                     AWRKNPQLVLDFYNYRRSEVLKAQPNAAHTGLAALEEHFDVTIITQNIDDLHERGGSS
                     RIVHLHGEIFKMRSERNERMIYDIKGDIRLGDKAEDGAQLRPHIVWFGEAVPMIEIAA
                     DIASTADIFVVIGTSLVVYPAAGLINYTPRSIPKFIVDRRIPEVSGISNLHAIELPAT
                     EGIAVLTEKLMRLK"
     gene            complement(1125..2222)
                     /locus_tag="VLL95_04590"
     CDS             complement(1125..2222)
                     /locus_tag="VLL95_04590"
                     /inference="COORDINATES: protein motif:HMM:NF042511.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6544 family protein"
                     /protein_id="HSR38168.1"
                     /translation="MYRVVLGILLLAHGLIHFIGFMRAFQPGMTLQITKQISAPVGIV
                     WLITALLFLTAAALKAFRNDYWWAPALLAVVLSQILIISTWADAKYGTLANVAILLAC
                     LVFMGNFFFERKFQKEVKAALVTTNINAGDIITGEDLEHLPPAVQRYLQFAGVVGQAK
                     VRNMRVVFEGTMRGRKQDWFSFHSVQYNTFDAPGRYFFMKGKMFGMEVPGYHRFADGH
                     ASMDIRLFGLASLVFKKGPIMDQSETVTLFNDMCLMAPATLIDKRIQWKEIDSVTVEA
                     TYSVNDISITARLSFDHAGKLINFESHDRYEVNEMKRLPWLTPCSDYKKLNGVMLATR
                     GEAVYQYPDTTFTYGVFNLKSVEYNVEEFKK"
BASE COUNT          593 a          598 c          650 g          637 t
ORIGIN      
        1 caggcaacgt tagcctgatg ctgtccactt tctggcggaa gcgttgttgc tgcgacaggc
       61 gcactgcagt cagcaggtca ttttcatccg gatgcttggc taacaataat gccgggccag
      121 ccatgctaat taacaagagg agggagaaga tgcggtgcat ggtcggtaga tgcattcact
      181 gtgattttcc atacactcaa tcgctttttt tctgccctac ttttgataca tggcagcaaa
      241 gcaacacctg ttagtgctta ccggcgccgg catcagcgcc gaaagtggtc tgaagacctt
      301 tcgcgacagt gaagatggat tgtggaatgg ctacgatatc gaagacgtgg ccacgcctgg
      361 tgcgtggaga aagaatccgc aactggtgct tgatttctac aactaccggc gcagcgaagt
      421 gctgaaggct caaccgaatg cggcacatac cgggctggca gcactggaag aacattttga
      481 tgttacgatc attacccaaa atatcgatga cctgcatgag cggggtggca gcagccgcat
      541 cgtgcatttg catggcgaga ttttcaaaat gaggagtgaa cgcaatgaac ggatgatcta
      601 tgatatcaaa ggggatatcc gcttaggcga caaggcagaa gatggggcac aattgcgtcc
      661 gcatattgtg tggtttggcg aggcggtgcc catgatcgag atcgccgcgg atatcgcttc
      721 aacggccgat attttcgtgg tcatcggtac ttcgctggtg gtataccctg ccgcgggttt
      781 gatcaattat acgccccgca gcattcccaa attcattgtg gatcgtcgca ttcctgaagt
      841 gtcgggtatt tccaaccttc atgccattga attaccggcc accgagggta tagcggtgct
      901 tacggaaaag ttgatgcggc tgaaataatg cctgcgcttc attcgaaggt gtatgttgat
      961 cttgtaaagg cttaacagaa ggtgaggaaa atgaaccaca gaggcacttc acgacacagc
     1021 gtatcaaaac gttgtgcaac gctgtgtctc catgtcgttg tggttcaatt gccgttttgg
     1081 ttataggaaa ctatgccttt gaaaggcttt tgccaaatgg cttatcattt tttgaattcc
     1141 tccacattgt attccaccga cttcaggttg aatacaccgt aggtgaaagt agtatccgga
     1201 tactggtaca cggcttcgcc cctggtggcc agcatcacgc cgttcagttt tttgtaatcg
     1261 ctgcaggggg taagccaggg cagtctcttc atttcattca cttcatagcg gtcatgcgat
     1321 tcaaaattga tgagcttgcc tgcgtgatca aaactgaggc gagcagtgat gctgatgtca
     1381 ttaacggagt aagtggcttc cacggtcacg ctgtctattt ccttccattg gatgcgcttg
     1441 tcaatcaaag tggcaggcgc catcaggcac atgtcgttga acagtgtcac cgtttccgat
     1501 tgatccatga tgggtccttt cttaaacacc agtgaggcca gtccaaaaag gcggatgtcc
     1561 atgctggcat gcccgtcggc aaagcgatgg tagcccggca cttccatgcc aaacattttg
     1621 cccttcatga aaaaatacct ccccggcgca tcaaaggtgt tgtattgtac cgagtggaac
     1681 gaaaaccaat cctgtttgcg gcccctcatc gttccttcga atactacccg catgttgcgc
     1741 actttggctt gacccaccac ccctgcaaat tgcaggtagc gttgtacagc aggaggcagg
     1801 tgttcaagat cctcaccggt gatgatgtcg ccggcattga tgttggtagt taccaatgcg
     1861 gccttcacct ctttttgaaa ttttcgttcg aagaagaagt ttcccatgaa aacgaggcag
     1921 gccaataaaa tggccacgtt ggccagtgtg ccgtatttgg catcggccca ggtgctgatg
     1981 atgaggattt gtgacagcac taccgccagc agggcaggag cccaccagta atcgttccgg
     2041 aatgctttca aagcggccgc tgtcaaaaac aggagggctg tgatgagcca tacgattccc
     2101 accggtgccg atatctgttt ggtgatttgc agtgtcatgc ccggctgaaa ggcccgcatg
     2161 aatcctatga agtgaatgag gccgtgtgcc agcaacaata tgcccaggac tacccggtac
     2221 ataaaaaaat agttttatgc tgtatgcttt tgatacaaca gcataaaact acggctgccc
     2281 tgcagcgtga atcatgatac ctgtcatgga aagaatactg aaccggtatt ggtcagcctt
     2341 tcagttttgc cactacgtca atatactcct gcatgcaggc gtcactgctt ttgccttttt
     2401 ggtcggccca ggcattgtgt ttggctttgc ctacaaagtc gaaaaggttg gatgggcctt
     2461 cggccggcgc atcgcctt
//
LOCUS       DATIQF010000282         3136 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_80342, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000282 DATIQF010000000
VERSION     DATIQF010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3136
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80342"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1308)
                     /locus_tag="VLL95_04595"
     CDS             complement(<1..1308)
                     /locus_tag="VLL95_04595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38169.1"
                     /translation="MKRLLFGLSFVMLTGSAFAQFDEAKNMVLINQNKKALESLNQLM
                     AKPKNAGKPEGYILKATILSNLMGESQDEAEKDKLLAESLEAYKKYQELDAKKEFVAQ
                     PPYTNPPIAYYSAYFNKGIKGYNKKDWPAAAADFGTTVFWSDYIIDNKLAKMEFDTSA
                     NLLAGAAFQNAKKDDEAVKYFTRLTDRKIGGEDNEFVYQFLMGHYFRKDDIAGFEKYR
                     ALGKELYPKSEYFTYTEMDFIMAMEDEAEKMKRIEAKIAKDPNNIELVENYGYLLFDR
                     LNGPDDKPLPDNAAELESKMTTFLTKAGEAKPTDGKPFYFLGNHFINKAVKVNQEIGK
                     VTDEIRKANANAKPDKTGKLPPPPKELTDKREQLKKAYDVEVDKGLPYLIKSAGAYGA
                     NTNLTGMEKQNYKKLVDQLILIYGDKKAATKDPKLKAEYEKEEK"
     gene            complement(1407..2597)
                     /locus_tag="VLL95_04600"
     CDS             complement(1407..2597)
                     /locus_tag="VLL95_04600"
                     /inference="COORDINATES: protein motif:HMM:NF015922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase C-terminal beta-propeller
                     domain-containing protein"
                     /protein_id="HSR38170.1"
                     /translation="MADEGLRYDIIKQELNEVKEKFGDARRTEIQYLADEISIADLIE
                     QEDVVITISHLGYIKRTSATEYRQQRRGGRGARGSRTREEDWIEHMFVANTHHTLLFF
                     TEKGRLYWLKVYEIPEGDKNSKGRAIQNLMQIPQDDKVRAIIDIANLEDKEFVQAHYI
                     VLCTKQGIIKKTSLEDFSRPRSTGVNAITIVEGDQLLEAKLTDGESEIMLALKSGRAI
                     RFPEEKVRPTGRGAIGVGGIEVDDRSDEVVGMLCVKKVDIDTRTILVVSEKGFGKKTP
                     VDEYRITNRGGKGVKTISITEKTGNLVGILSVSDEEDLLITCKSGITIRTSVESIREA
                     GRATQGVKLIRLEDDDEIAAVTQIERDEEEEADATEETTTNGEQPGDENGELPASGEQ
                     ETQA"
     gene            complement(2613..>3136)
                     /locus_tag="VLL95_04605"
     CDS             complement(2613..>3136)
                     /locus_tag="VLL95_04605"
                     /inference="COORDINATES: protein motif:HMM:NF012731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HSR38171.1"
                     /translation="LVNEKVIEGISNVNNESNLKEGTRIVLDLKRDAVPQVIINQLYK
                     LTELQTSYGINNVALVRGRPRTLNLKDLISEFVIFRHEVVVRRTRFELKKAEERAHIL
                     EGFLIALDHLDEVIQLIRNSATPEIAREGLMTNFGMTEIQARAVLDLRLQRLTGMERD
                     KIREEHAEIMKQI"
BASE COUNT          660 a          805 c          637 g         1034 t
ORIGIN      
        1 cttctcttct ttctcgtatt ctgccttcaa cttagggtct tttgtggcgg cttttttgtc
       61 gccgtaaatt aaaatcaatt ggtccaccag tttcttataa ttctgctttt ccataccagt
      121 caggttggta ttcgcaccat aggcaccggc agacttaatc aaataaggca aacctttgtc
      181 cacctctaca tcataggctt ttttaagttg ctctcttttg tcagtcagtt ctttgggtgg
      241 aggcggaagt ttgccagttt tatcaggctt tgcgttggcg tttgccttcc tgatttcatc
      301 cgtcacttta cctatttcct ggttaacctt tacagctttg tttatgaaat ggttgccaag
      361 gaaatagaat ggttttccat cggttggttt tgcttcgcct gcctttgtca aaaaagtagt
      421 catttttgac tccaattctg ccgcgttatc tggcaaaggt ttgtcatcag gtccattgag
      481 tctgtcaaac aaaaggtatc cataattctc taccaactct atattgttcg gatccttggc
      541 aattttggcc tcaatgcgct tcatcttctc tgcttcatct tccattgcca ttatgaagtc
      601 catttcggta taggtgaagt actcactctt tggatacaac tccttgccga gtgccctgta
      661 tttctcaaat ccggcaatgt cgtccttgcg gaaatagtgg cccataagaa actggtaaac
      721 gaattcatta tcctcacccc caatcttcct gtcagtcagc ctggtaaaat attttacggc
      781 ctcatcgtcc tttttggcat tttggaaggc ggccccagcg agcaggttgg cgctggtgtc
      841 aaattccatt tttgcaagct tattgtcgat aatatagtcg ctccaaaaaa cagttgttcc
      901 aaaatcagct gccgctgctg gccagtcttt tttgttatag cctttaatgc ccttgttgaa
      961 atacgctgaa tagtaagcaa taggtggatt ggtataaggt ggctgtgcaa cgaattcttt
     1021 ctttgcatcc aactcctggt actttttgta agcttccagt gattccgcca acagcttgtc
     1081 cttttcggct tcatcctggc tttctcccat caaattggac aaaatggttg ctttcaggat
     1141 atacccttca ggcttgcccg cattctttgg ctttgccata agttgattaa gggattccag
     1201 tgctttctta ttttggttga tcagcaccat gttttttgcc tcatcaaact gggcaaacgc
     1261 cgaacctgtc agcatcacaa atgacaggcc gaaaagcaaa cgtttcatgt gtaatttaat
     1321 tttagttttt attgcttttg aaaactgcca cgataataag gctaccccgg caaagttttc
     1381 ctgttttttc tcagctaaat atcaaatcag gcttgtgttt cctgttctcc ggatgctggc
     1441 aattctccat tttcatcgcc cggctgttca ccattggttg ttgtttcttc cgttgcgtct
     1501 gcctcttcct cttcgtcccg ctctatttgg gttaccgctg ctatttcatc atcatcctcc
     1561 agcctgatca gcttcactcc ttgcgtagcc cggccggcct cccgtattga ttccacactg
     1621 gttcggatgg taatgccaga cttacaggtg atcaacagat cttcctcgtc tgaaacgctg
     1681 aggatgccaa ccaggttacc ggtcttttcg gtaatactga ttgttttaac acctttacct
     1741 cccctgttgg taatgcggta ttcatccact ggtgtcttct tcccaaatcc tttttcgctg
     1801 acaaccaata tggtacgagt gtcaatgtca acctttttca cgcacaacat gcctaccact
     1861 tcatctgacc tatcgtcaac ttcgatgccg ccaaccccga tcgctcccct gcctgtcgga
     1921 cgaacttttt cttccggaaa gcgtatggcg cgacccgatt tcagcgccag catgatctca
     1981 ctttcgccat ctgtgagctt ggcctccagc aattgatcgc cttccacaat cgtgatagcg
     2041 tttaccccag ttgatctagg acggctgaaa tcttccaaac ttgtcttctt gataatccct
     2101 tgcttggtgc acaaaacaat atagtgggcc tgcacaaact ccttgtcttc caggttggca
     2161 atgtcgatga tagctctcac cttgtcgtcc tgcggaatct gcatcaggtt ttggatggcc
     2221 ctgcctttgc tgttcttgtc cccttcagga atttcataca ccttaagcca atagagcctg
     2281 cctttttcgg tgaagaaaag cagtgtatgg tgggtgttgg caacaaacat atgctcaatc
     2341 caatcctcct cccgggtgcg gcttccgcgg gcaccacggc ctcctcttct ttgctgacgg
     2401 tactcggttg cgctggtacg tttgatatat cctaaatgcg agatagtaat tacaacatct
     2461 tcttgttcaa tgagatctgc aatactgatt tcgtctgcca ggtactgaat ttcggtcctt
     2521 ctggcatcac cgaatttctc ttttacctcg ttgagttcct gcttgatgat atcgtagcgg
     2581 agtccttcat cggccaaaat gctcttcagg tattagattt gcttcatgat ctcagcatgt
     2641 tcctcgcgga tcttgtcgcg ttccataccg gtcaatcgct gcaggcgcaa atccagaacc
     2701 gcccttgcct gaatttcggt cattccgaaa ttcgtcatca ggccttccct ggctatttca
     2761 ggagtggctg agtttctgat caactggatg acttcatcaa ggtgatccag tgcaatcagg
     2821 aatccttcga ggatatgggc cctttcctct gcttttttca gttcgaaacg ggtgcggcgc
     2881 accaccactt cgtggcggaa tatgacgaac tcgctgatga gatccttgag attcagggtc
     2941 cttggacgtc ccctcaccaa ggctacgttg ttgattccgt atgaagtttg tagttcagtt
     3001 aacttgtata actggttgat tattacttgt ggaacggcat ctctcttcag gtccaaaact
     3061 atccgcgtcc cctctttcag gttggattcg ttgttgacgt tagaaatgcc ttcaattact
     3121 ttttcattca ccaact
//
LOCUS       DATIQF010000283         1520 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_277915,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000283 DATIQF010000000
VERSION     DATIQF010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277915"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(128..601)
                     /locus_tag="VLL95_04610"
     CDS             complement(128..601)
                     /locus_tag="VLL95_04610"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HSR38172.1"
                     /translation="MAGKLNLDKLDYQIIQHMMEDAEISYADLGKKLFVSGGTIHVRI
                     KKLQEMGIVKGTRLAVDTHKLGYNVIAFVGIYLEKSSLYDSVAKDLMKIPEVVRLNYT
                     TGNYSMFVEIACKDINQLRYVLHDQMQKIKGIERTETLISLEESLNRNIQVAQDV"
     gene            complement(1294..>1520)
                     /locus_tag="VLL95_04615"
     CDS             complement(1294..>1520)
                     /locus_tag="VLL95_04615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38173.1"
                     /translation="AHFILQGFAWATQFITAHYRIGLRPILKVGGLQQSPAAIAADGL
                     FVFPLWRTRFATLQNKKPRFASANRGFAVL"
BASE COUNT          375 a          345 c          372 g          428 t
ORIGIN      
        1 ggccgttttg gccaatacga atggaaaggc agggtcatac aaaaaccctc agcactggtg
       61 ggtcagcact gagggcatcg tgttggttgt tcagcattat tagcaacctg gaagttgctg
      121 acagccttta aacgtcctgc gccacctgga tattccggtt gaggctttct tccagcgata
      181 tcagcgtttc ggtacgttct atgcctttga tcttctgcat ttggtcgtgc agcacgtagc
      241 gcagttggtt gatgtctttg caggcaattt ctacaaacat gctgtagttg cccgtggtat
      301 agttgaggcg caccacttcc gggattttca tcaggtcttt ggccaccgaa tcgtacaatg
      361 aacttttctc caggtatatg cccacaaagg caatgacatt gtagcctagt ttgtgggtat
      421 ccacagccag ccgggtgcct ttcacaatgc ccatttcctg cagtttcttg atgcgtacat
      481 gaatggtacc tccgctcaca aaaagttttt tgcccagatc ggcgtaagag atttcggcat
      541 cttccatcat gtgctgaatg atctggtaat cgagtttgtc gagattcagt tttccggcca
      601 ttttgaattt gttgattgga aaaattatac catttgattc taaagtgtga ataatttcaa
      661 aagttattaa aatttacttc gaaaatttgg aatgaaatgg acgattcgtt taacattgca
      721 ctgtcaatga aaacgcaggt gtgacaagga tagtaaaagt aaggtttgcg tttcaatcaa
      781 caatagttct ttttcattgg aaatattcta aaaaaggatg tttccgccgc acatactgta
      841 ggatgatgaa attttggcag acatgccctc ttgtctcggg ggtgggggcc acaggataaa
      901 cgctacatag agccgtgccg gttttgtcga ttgaaggtca acaccaatct gcaacaccgg
      961 acccgaccag ggttgaccac ttttctttgt gtagaggcta actgccccgt ggaggttcga
     1021 atccttctcc tacagccagg tttttagttt ttagttcttt gtttttggtt gtatggttta
     1081 accatcaacc acaaacatca aaattgtggg gtgttgaaac ttttggcaga catgccctct
     1141 tgtctcgagg gtggagagca aaggataaac actgtataac gccgatcccg actgcagcgg
     1201 gaccgactgg ggttgaccac cagcaggttt gagatcgctt ctcaatcacg atgtacagcg
     1261 gctaacttct ccgtggaggt tcgaatcctc cccctacagc acagcaaagc ctcgattcgc
     1321 ggatgcgaat cggggctttt tgttttgcag cgtggcgaac ctcgttcgcc aaagcggaaa
     1381 aacaaaaagc ccgtcagccg caatagcggc tgggctttgc tgtaagcccc ccactttgag
     1441 gatcggcctc aggccaatcc gatagtgcgc cgtgatgaat tgtgtggccc atgcaaaacc
     1501 ctgcaaaatg aaatgggcag
//
LOCUS       DATIQF010000284         2348 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_293199,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000284 DATIQF010000000
VERSION     DATIQF010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2348
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293199"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1096)
                     /locus_tag="VLL95_04620"
     CDS             complement(<1..1096)
                     /locus_tag="VLL95_04620"
                     /inference="COORDINATES: protein motif:HMM:NF015148.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OPT/YSL family transporter"
                     /protein_id="HSR38174.1"
                     /translation="MSNQSFQPFIPDEAKIPEFTIKSVLMGALFGIIFGASTVYLALK
                     AGLTVSASIPIAVIAITLGRKLLKTTILENNIIQTTGSAGESIAAGVVFTLPGFLFLS
                     DPESKEFFNYITILTLATFGGVLGTLMMVPLRRSLIVKEHGVLPYPEGTACASVLKAG
                     EKGGDFAKTAFMGLGFAFVYAFLQKLLHVIAETPFFMTKQINKYFPSAKVSGEITPEY
                     MGVGYIIGPKISGVLVAGGVIAWMALIPLLASLVPPDVIAAQLVKLGYLGGLDKTGGP
                     GGWDPVAHTFNDFSTAIYRAYIRQIGAGAVAAGGFITLIKTIPTIISSFKGSLSSMKE
                     QGNAASSVKRTERDLNMKVVLIGSVALILIM"
     gene            complement(1188..>2348)
                     /locus_tag="VLL95_04625"
     CDS             complement(1188..>2348)
                     /locus_tag="VLL95_04625"
                     /inference="COORDINATES: protein motif:HMM:NF013050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38175.1"
                     /translation="LAAGIGMLISVVVQMAFAKQYIIDPDNKVLGQTPANAPAIWIKP
                     ILMILGLAGFAALAIGLLYADAKVMPYLTYLLAAATLFIAFIIFKDKTLNSIEKQRIS
                     VIFIVAFFVIFFWSAFEQAGASLTFFADEQTNRHIGLDLPSWIVYPIGAALLFFIFRL
                     YNTAKNSLANENESRLRNTVYGLLFAFAAAIVYGIISVASGATDRITMDELPASTFQS
                     LNSIFVVTFAPVFAWLWLKLGKYEPAAPTKMALGLFLLSLGYLWIAFGVKNVAPGIKV
                     SMIWLTGMYALHTWGELCLSPIGLSLVNKLAPFKLASLLMAVWFLANAAANKLAGVLS
                     ALYPDNKTTTFLGYQMTNLYDFFMLFVVMSGVASLILFVLSRKLLKMMHGIK"
BASE COUNT          652 a          562 c          599 g          535 t
ORIGIN      
        1 ccatgatcaa aatgagcgcc acactgccta tcaacaccac cttcatgttc aggtctcttt
       61 cagtacgctt caccgatgaa gcggcattgc cttgttcctt catcgaactg aggctgccct
      121 tgaaagaaga gatgatggtg ggaatggttt tgatgagcgt aatgaaacca cccgctgcca
      181 cggcaccggc accaatctgt cggatgtagg cacggtaaat ggctgtagaa aaatcgttga
      241 atgtatgtgc caccggatcc cagccaccgg gtccgccggt cttatcgagc ccgccgaggt
      301 agcccagctt caccagttgc gcagcaatta catcaggtgg aaccagcgaa gccagtaacg
      361 gtatcagcgc catccaggca ataacaccac cggctaccaa tacaccgctg atcttggggc
      421 cgatgatata acccacgccc atgtattccg gcgtgatctc gccactcact ttggcagaag
      481 gaaaatactt gttgatctgt ttggtcatga agaagggcgt ttctgcaatg acgtgcaaca
      541 gcttttgcag aaaggcgtac acaaaggcga agccaagacc catgaaagcc gtctttgcaa
      601 agtcgccgcc tttttcgccg gccttcaata cactggcgca ggcagtgcct tccgggtaag
      661 gcaatacgcc gtgctccttc acgatgagcg accggcgcag tggtaccatc atgagcgtac
      721 ccagcacacc accaaaggtg gccagcgtca agatggtgat gtagttgaaa aactccttgc
      781 tttccggatc gctgaggaac aggaaaccgg gcagggtgaa caccacaccc gcggcaatgc
      841 tttcgccggc gctgcccgtg gtttgaatga tgttgttttc gagaatggtc gttttcagca
      901 gttttcttcc cagcgtaata gcgatgacgg caatgggaat ggaagcgctt acagtaaggc
      961 ctgctttcaa cgccaggtac acagtggagg cgccaaagat gatgccgaac aaagcgccca
     1021 tcagtacact ctttatcgtg aactcaggga tcttcgcttc gtcgggaatg aatggttgaa
     1081 atgattgatt gctcatatgg caattggttt atcgttggaa gatagggtaa atcacaaaaa
     1141 aaggagatgc ggcaatgcat ctccttttct ataggcagaa agaatgacta ctttatacca
     1201 tgcatcatct tcagcagttt gcggctgagc acaaaaagga tgagcgatgc caccccactc
     1261 attacaacaa agagcatgaa gaaatcgtag aggtttgtca tttggtagcc aaggaatgtg
     1321 gtggtcttgt tatcgggata caaggcactg agtacacccg ccagtttgtt ggccgcggca
     1381 ttggccagaa accataccgc catcaacaat gaggcaagtt tgaacggcgc cagtttattc
     1441 accaatgaaa gtccaatggg agacaaacag agttcgcccc aggtatgcaa tgcatacatg
     1501 ccggtgagcc atatcatgct gaccttgatg cccggtgcta catttttcac gccgaaagca
     1561 atccacaaat agccgagaga aagcaggaag aggcccagtg ccattttggt gggtgcagct
     1621 ggttcgtatt tgcccagctt gagccataac catgcaaata ccggagcaaa agttaccacg
     1681 aagatggagt tgagagattg gaacgtgctg gcgggcaatt catccatagt gatgcgatct
     1741 gtggcaccgg atgcgacact gatgattcca taaacgatgg ctgcagcaaa agcaaaaagc
     1801 aatccataaa cagtattcct caatctcgat tcattttcat ttgccaatga gtttttcgct
     1861 gtattgtaca aacggaaaat gaagaatagc aaagcggcgc ctatggggta aacgatccat
     1921 gaaggaaggt caaggccaat atgacggttg gtttgttcgt cagcaaaaaa ggtgagcgat
     1981 gcgccagctt gttcaaaagc gctccagaag aagatgacaa aaaaagctac tatgaagatc
     2041 accgagattc gctgcttttc aatactgttc agtgtcttgt ctttgaaaat gataaaagca
     2101 ataaacaagg tggcagctgc cagaagatag gtgaggtagg gcattacttt ggcgtctgca
     2161 tacagaagac caatggccag tgcagcaaat ccagccagtc caagaatcat caggatgggt
     2221 ttgatccaaa tggctggggc attcgccggg gtttgcccca ataccttgtt gtcagggtcg
     2281 atgatgtatt gtttggcgaa tgccatttgt accactacac taatcagcat tccaatacca
     2341 gcagctaa
//
LOCUS       DATIQF010000285         3873 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_277956,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000285 DATIQF010000000
VERSION     DATIQF010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3873
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277956"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..760)
                     /locus_tag="VLL95_04630"
     CDS             complement(<1..760)
                     /locus_tag="VLL95_04630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HSR38176.1"
                     /translation="MKRMIKIFSGTVASLAAMMLLASCEKETFSFGEIAAPRSLTLAT
                     VVEGVDAANPDGNGSGKVNITTKADNAITYKIDFGDGKTQMVPSGQIQYRYTAPGTAD
                     YTITVNAVGTGGTQTVLSKKVRVFVRFELPADIVTALTGTGTKTWATDRAADGHFGVG
                     PIDQFAPIWYAATPESREACAYDDRITFSKDAAGNISLNVDNKGESFSIGAATAFYGF
                     SGGDGCYGINTGGTKKLKFFDDTSGSNANVSRMIE"
     gene            complement(780..2831)
                     /locus_tag="VLL95_04635"
     CDS             complement(780..2831)
                     /locus_tag="VLL95_04635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38177.1"
                     /translation="MNKIKILSGFLALLFVLAGCKKELNYDLSFVSTDTNPAKLSAMY
                     RIAQDNSGLVTITPNGEGLAYTLVYFGDGTATPEKALPGQGVQHKYAEGNYSVKLRGV
                     SVTGLTTEATQPLTVSFRAPENVKMTAAIDAANKFKVNVTATADYATVFNVYFGDVPN
                     EVPQSFLPGTTISHVYAKTGTYKVRVVALSGGAASTEVSQDVNIVNPVLLPIDFEDPN
                     QPYPFVNFDGGVSTVVNNPFKTGINTSARTGKMVKNPGQPWGGSLLGLGAPIDFSTGK
                     YFRMKVYSPRVGAKVLLKVENAANNSINFEKEVATTVANAWEDLVFDYTAINTSNTYN
                     NIVLIFDLGTPGDGSANFTWHFDDIRLVSSLPSTAIKMPVDFESSVINYKFTDFGNAA
                     ASVISNPKSGANNSSAKVGKLLKANGAEVWAGSFMELGSPIDFSSMKKIRMKVWSPKA
                     GITVKMKLENLADANKNTEVDVKSTKANDWEDLIFDFSGANHSFTYQRLVVFFDFGNP
                     GNGAEYYFDDIELTSGTEQLVLPLTFQSSTLNYAFTNFDGGNASVINNPDASGINTSS
                     RVGKMVKGPGGQQWGGAYLTLDAPIDFSTKKTMTVKVWSPRVGAKMLLKVENLTDGGI
                     AFEKEVASTKAGQWETLTFDYSAINASKSYQKVVIIFDLGTVGNGSSDFTWYFDDISL
                     N"
     gene            complement(2853..>3873)
                     /locus_tag="VLL95_04640"
     CDS             complement(2853..>3873)
                     /locus_tag="VLL95_04640"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSR38178.1"
                     /translation="DVPLFVDRRLSASDSRQLQRAPKAEVYKQIEADLNKAILVLPVS
                     NPQKGRVTKYAAQALLGKVYLYQNKFNEAAAMLENVISGPFSLVADFNSIFLQGGENG
                     PESVFEIQYSNVSPFFDWSNPGRGQGNLAVQVCGVRNITGSSPYAQGWSTNLPTRNLA
                     DAFEAGDKRKAATILDIEAFKNANPQFNITYLVAPFKNTGLYNHKYHPRKGETSGQIE
                     LNYLNNFRTIRFADVLLMAAEAHNRKSSPDDAKAQSYLNRVRQRAFGDNNHNVTLAGT
                     ALRDAIWNERRLELAMEGDRFFDLVRTGKAATTIAGFKTGKNELFPIPQQEVDISGLT
                     QNPGY"
BASE COUNT          765 a          948 c         1148 g         1012 t
ORIGIN      
        1 attcgatcat gcgggatacg ttggcgttgg agccagacgt gtcatcgaag aacttgagtt
       61 ttttggtacc accggtgttg atgccgtagc aaccatcgcc acccgaaaat ccgtagaaag
      121 cggtagccgc gccaatggaa aagctttcac ctttgttgtc aacgttgagc gaaatgttgc
      181 cggccgcgtc tttcgagaac gtgatgcggt cgtcgtaagc gcaggcttcg cgggattcgg
      241 gcgtagcggc ataccagatg ggagcgaact ggtcaatggg tcctacgcca aagtgtccgt
      301 ctgccgctct atcggtggcc catgttttgg tgccggtgcc ggtgagggcg gttacgatgt
      361 cggcgggcag ttcaaagcgc acaaacaccc ttactttttt gctcagcacg gtttgcgtac
      421 cgccggtgcc tacggcattc acggtgatgg tgtaatcagc ggtgcccggc gcggtatagc
      481 ggtattgaat ttgtcccgag ggtaccattt gtgttttgcc atcgccaaaa tcaattttgt
      541 acgtaatggc gttatcggct ttggtggtga tgttcacctt gccactgcca ttgccgtcgg
      601 ggttggcggc atcgacgcct tccaccacgg tagccagtgt cagcgaccgt ggagcggcta
      661 tttcaccaaa ggaaaaggtc tctttttcgc aggaggccag cagcatcatg gctgccagtg
      721 aggccaccgt acctgaaaat atttttatca tgcgtttcat agtagcaatt ttcaattggt
      781 taattaaggc tgatgtcgtc gaagtaccag gtgaaatcgg atgagccatt gcccacggta
      841 cccaggtcga agatgatcac cactttctgg tagctcttgc tggcgttgat ggcgctgtag
      901 tcgaaagtga gggtttccca ctgtccggcc ttggtgctgg ctacctcttt ttcaaaggcg
      961 atgccaccat cggtcaggtt ttccactttc agcagcatct tggcgcccac tcttggcgac
     1021 catactttca cggtcatggt ctttttggta gagaagtcga tgggtgcatc gagggtgagg
     1081 taagcgccgc cccactgctg gccgccgggt cctttcacca ttttgcctac gcggctgctg
     1141 gtgttgatgc cgctggcatc ggggttgttg atcacgctgg cattgccacc atcaaaattg
     1201 gtgaaggcat agttgagcgt agacgactgg aaggtgaggg gcagtaccaa ttgttcggtg
     1261 ccgctggtga gttcgatgtc atcgaaatag tattccgctc cgttgccggg gttgccgaaa
     1321 tcgaagaata ccacgaggcg ctggtaggta aagctgtggt tggctccgct gaaatcgaag
     1381 atgaggtctt cccaatcgtt ggccttggtg ctctttacat ctacctcggt attcttattg
     1441 gcgtcggcca ggttttccag tttcattttc acggtaatgc cagccttggg cgaccatact
     1501 ttcatcctga tcttcttcat ggaagagaaa tcgatggggc tgcccagttc catgaaggag
     1561 ccggcccata cttcggcgcc atttgccttg agcaacttgc ccactttggc gctgctgttg
     1621 ttggctcctg atttggggtt gctgatcacg gaagccgccg cgttgccaaa atcggtgaac
     1681 ttgtaattga tgacggagct ttcaaaatcc accggcattt tgatggcagt ggaaggaagg
     1741 ctgctgacga ggcggatgtc atcgaagtgc caggtgaagt tggcagaacc atcgccgggg
     1801 gtgccgaggt cgaagatcaa cacgatgttg ttgtaagtgt tggacgtgtt gatggctgtg
     1861 taatcaaaca cgaggtcttc ccaggcattg gctacggtgg tggccacttc tttttcgaag
     1921 ttgatgctgt tgttggccgc attctccact ttcagcagca ctttggcgcc tacccgtggt
     1981 gagtacactt tcatgcggaa gtatttgcca gtcgaaaagt cgatgggtgc tcccagtccc
     2041 agcaggctgc cgccccaggg ctgaccgggg ttcttcacca tcttaccggt ccttgcagag
     2101 gtattgatcc ctgttttgaa aggattgttg actacggtcg atacgccgcc atcaaaattc
     2161 acgaaaggat aaggctggtt gggatcttca aaatctatgg gcagcaacac agggttcacg
     2221 atgttcacgt cctgcgatac ttcggtgctg gctgcgccac cactcagtgc caccactctt
     2281 accttgtagg tgccggtttt ggcatataca tggctgatgg tggtgccggg caggaatgac
     2341 tgcggcactt cgttgggtac atcgccaaaa tacacgttga acacggtggc ataatcggcg
     2401 gtagcggtca cgttcacctt gaacttgttg gccgcgtcaa tggcagcggt catcttcacg
     2461 ttttcaggcg ccctgaagga tacggtgagc ggttgagtgg cttcggtagt aagaccggta
     2521 acactcacgc cacgcagctt tacgctgtag ttgccttcgg catacttgtg ttgtacaccc
     2581 tggcccggca gtgctttctc cggggtggcg gtgccgtcgc caaaataaac caatgtgtag
     2641 gccagtcctt cgccattggg ggtaatggtt acaaggccgc tgttgtcctg cgctatgcgg
     2701 tacatggccg acaacttggc cgggtttgta tcggtggata caaatgaaag gtcatagttc
     2761 agttcctttt tgcaacctgc cagtacaaac agcagggcca ggaagccaga taatattttg
     2821 atcttgttca taataagcgg ttttaaaatg aatcaatagc cggggttttg agtgagcccc
     2881 gatatatcaa cttcctgttg cggtatgggg aacaattcat ttttaccggt cttgaagccg
     2941 gcgatggtag tggcggcttt gccggtgcgt accaggtcga agaagcggtc gccttccatg
     3001 gccagttcca gtcttctttc gttccagatg gcatcgcgga gggcagtgcc ggcgagggta
     3061 acgttgtggt tgttgtcgcc gaaggcacgc tggcgtaccc tgttgaggta agactgagcc
     3121 tttgcgtcat ccgggctgct cttgcggttg tgggcttcag cggccatcag cagcacatcg
     3181 gcaaagcgga tggtgcggaa attgttgagg tagttcagtt ctatctgtcc tgaagtttcg
     3241 cctttgcggg gatggtactt gtggttgtac aggcccgtgt ttttgaaagg cgctacgagg
     3301 taagtgatgt tgaactgagg gttggcgttc ttaaaggctt caatgtcgag gatggtagcg
     3361 gctttgcgct tgtcgccagc ttcaaaagcg tcggcgaggt tcctggtggg caggttggtg
     3421 ctccagcctt gtgcgtaggg gctgctgccg gtaatgttcc tgacaccgca tacctgcacg
     3481 gcgaggttgc cctgtccgcg gccggggttc gaccaatcga agaaggggct cacgttggag
     3541 tactggatct cgaacacaga ttcgggtccg ttttcaccac cctgcaggaa gatggaattg
     3601 aagtcggcta ccaacgagaa gggtccgctg atcacgtttt cgagcatggc ggcggcctca
     3661 ttgaatttgt tctggtacaa gtataccttg cccagtaatg cctgtgcggc atacttggta
     3721 acgcgtcctt tttgcgggtt gctcaccggc agtaccagga tggccttgtt gaggtcggct
     3781 tcaatctgct tgtacacttc tgccttgggc gcccgctgca actggcgtga atcggaagcc
     3841 gacaaacgac ggtcaacaaa caatggcaca tcg
//
LOCUS       DATIQF010000286         2394 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_126200,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000286 DATIQF010000000
VERSION     DATIQF010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2394
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126200"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            125..655
                     /gene="rdgB"
                     /locus_tag="VLL95_04645"
     CDS             125..655
                     /gene="rdgB"
                     /locus_tag="VLL95_04645"
                     /inference="COORDINATES: protein motif:HMM:NF013854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HSR38179.1"
                     /translation="MQKAIPAGYEVLSLKAAGITVDIPEPHDTLEANASEKSGTILAM
                     TGQNCFSEDTGLEVEALQGAPGVRSARYAGDAASFADNVQLLLRNMEGQANRKARFRT
                     VISLRYQGQEHLFEGICTGHISTAVQGEGGFGYDPVFVPDGDTRTFAQMTLEEKNQYS
                     HRAKAVAALFDFLAKQ"
     gene            666..1100
                     /locus_tag="VLL95_04650"
     CDS             666..1100
                     /locus_tag="VLL95_04650"
                     /inference="COORDINATES: protein motif:HMM:NF024675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HSR38180.1"
                     /translation="MPRIKIPQLNQYAFSVDIPVRISDLNYADHVGNDSFLSIMHDAR
                     MLYLMSRGFTEMNVEGFGLIMADAGVEYKAQMKYGDLVTVEVGIDDFSTVGFDVYYRL
                     SVQRDGQRKITALGKTGMVLFDFQLQKMAPITADLKARLIGG"
     gene            complement(1112..1855)
                     /locus_tag="VLL95_04655"
     CDS             complement(1112..1855)
                     /locus_tag="VLL95_04655"
                     /inference="COORDINATES: protein motif:HMM:NF020090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HSR38181.1"
                     /translation="MRLFGLIGYPLSHSFSKNYFTQKFERERRIDCRYELFPIANIHK
                     LPELLEHHPDLEGLNVTIPYKLEVLPYLHKTEGLPAALQACNCIRIRNGVLEGFNTDY
                     VGFENSLKPLLQPHHRQALVLGNGGASKAVMYVLNQLNIPFEVVSRKLHEGSTLTYEQ
                     LDFAAVRSHTLIINTTPLGTFPNVNECPPIPYEAITDQHLLYDLVYNPELTLFMERGQ
                     QQGAVVKNGYEMLVGQAEAAWRIWNEGRA"
     gene            complement(1855..>2394)
                     /locus_tag="VLL95_04660"
     CDS             complement(1855..>2394)
                     /locus_tag="VLL95_04660"
                     /inference="COORDINATES: protein motif:HMM:NF014709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphosulfolactate synthase"
                     /protein_id="HSR38182.1"
                     /translation="PRLDHVDLRGPGRRGRGGMLKDYGIDWIEVSDGSITIPHAEKCG
                     YIEKLTRHGKVLSEVGSKDATHIIPPYKWIELMRAELSAGSSYVIAEAREAGNVGIYR
                     GRGEVREGLVQEILTQIPGEKIIWEAPQKAQQLYFLELLGCNVNLGNIAPNEVIPLEA
                     MRIGLRGDTFHLYLDKQEA"
BASE COUNT          522 a          681 c          658 g          533 t
ORIGIN      
        1 cgaacacccc ctccctgtca actcaccaga accatttagc tttggcggcg acattcaaac
       61 tgccgtactg ttcctgatca tgcaactcat attcgccacc aacaacgccc acaaggttta
      121 ggaaattcaa aaagccatcc cggccggcta tgaggtgctg agcctgaaag cggccggtat
      181 caccgtcgac atcccggagc cacacgatac cctcgaagcc aatgcgagtg aaaagtcggg
      241 caccatactg gctatgaccg ggcaaaactg cttcagcgaa gacacggggc tggaagtgga
      301 agccctgcag ggtgcccccg gggtgcgcag tgcccgctat gccggcgatg ccgccagttt
      361 tgccgacaat gtgcaactgc tgctgcgcaa tatggaaggg caggccaatc gcaaagcccg
      421 ctttcgcacc gttatttcgc tgcggtacca ggggcaggaa catttgtttg aaggcatctg
      481 cacagggcat atcagcaccg cggtgcaggg cgaaggcggc tttggttacg accctgtatt
      541 tgtgccggat ggcgataccc gcacttttgc ccaaatgacc ctcgaagaaa agaaccaata
      601 cagccaccgg gccaaagcag tggccgctct gttcgacttt ttagcaaaac agtaaaatac
      661 ttcctatgcc tcgcatcaag atcccccagc tcaaccagta cgctttcagc gtcgatatac
      721 ccgttcgcat ttccgacctc aattatgccg atcacgtcgg caacgactcc ttcctgtcca
      781 tcatgcacga cgcccggatg ctctacctca tgtcgagggg ttttactgaa atgaacgtgg
      841 aaggatttgg attgatcatg gccgatgccg gcgtggaata caaggcgcaa atgaaatacg
      901 gcgacctcgt taccgtggaa gtgggcatcg atgatttcag caccgtgggg tttgatgtgt
      961 actacaggtt gtctgtacaa cgggatggcc agcgcaagat cacggccctg ggcaaaaccg
     1021 gcatggtgct gttcgatttt cagttgcaga aaatggcgcc aatcacagct gatctgaaag
     1081 ccaggctgat tggcggataa ggccgttcgt atcaggccct gccctcgttc cagatgcgcc
     1141 aggcagcttc agcctgccct accagcattt cataaccgtt ctttaccacc gctccctgct
     1201 gctgcccccg ctccatgaaa agcgtcagtt cggggttgta caccaggtcg tacagcaggt
     1261 gttgatcggt aatggcttcg taaggaatgg gggggcattc gttcacattc gggaaagtgc
     1321 ccaaaggcgt ggtgttgatg atcagcgtat gactgcgcac cgcagcaaaa tcgagttgct
     1381 cataggtaag cgtagagcct tcatgcaact tacggctcac cacctcgaaa ggaatgttga
     1441 gttgattcag cacatacatc acggccttgc tggcgccgcc attgcccagc accagggcct
     1501 gccggtgatg cggctgcagc agtggtttca ggctgttctc gaaaccaaca tagtcggtat
     1561 tgaagccttc cagcacgccg tttctgatgc ggatgcagtt gcaggcctgc agggcggcag
     1621 gaaggccttc cgttttgtgc aggtaaggca gcacttccag tttgtagggg atggtcacat
     1681 tcaggccctc caggtcggga tgatgctcca gcagttccgg cagcttgtga atgttggcaa
     1741 tggggaacag ttcgtagcgg cagtcgatcc tgcgctcccg ttcaaacttt tgggtgaaat
     1801 agtttttcga aaaagaatgg gacagcgggt acccaatcaa accgaataat cgcatcaggc
     1861 ttcctgtttg tcgaggtaaa gatggaaggt gtcgccacgc aaaccgatcc gcattgcctc
     1921 cagcgggatc acttcattgg gcgcaatatt gcccagattc acattgcaac ccagcaattc
     1981 aaggaaatac aattgctgcg ctttttgcgg cgcttcccaa atgatctttt cgccggggat
     2041 ctgggtcagg atctcctgca ccaggccttc ccgcacttcg cctctgccgc ggtaaatacc
     2101 cacgttaccg gcctcacggg cttcggctat cacgtagctg ctgccggcgc tcagttcggc
     2161 ccgcatcagt tcaatccact tgtacggggg aatgatatgg gtggcatcct tgctgcccac
     2221 ttcgctcagc accttgccgt gccgggtcag tttctcgata taaccgcatt tttcggcgtg
     2281 ggggatggtg atgctgccgt ctgatacttc gatccagtcg atgccgtagt ctttcagcat
     2341 ccccccgcgg ccgcggcggc cggggccgcg caggtccacg tggtccaggc gggg
//
LOCUS       DATIQF010000287         2622 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_34759, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000287 DATIQF010000000
VERSION     DATIQF010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2622
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34759"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1262
                     /gene="mnmE"
                     /locus_tag="VLL95_04665"
     CDS             <1..1262
                     /gene="mnmE"
                     /locus_tag="VLL95_04665"
                     /inference="COORDINATES: protein motif:HMM:TIGR00450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HSR38183.1"
                     /translation="LMPGKKLQEKESHTLHVGWLKWNDERIDEVVVSLFRNPRSFTGE
                     DVVELSCHGSPFILQKALDACIMAGARIAKPGEFTLRAFLNGKMDLAQAEAVADIIAS
                     HSAAAHHTAIDQMRGGFSNVLSALRDKLIQFSALIELELDFATEDVEFADRSALHQLI
                     STIQLTVNELLQSFQLGNVIKQGVNVAIIGKPNAGKSTLLNTLLNENRAIVSDIAGTT
                     RDTIEEVLNIDGLLFRLIDTAGIRDSSDEIESIGVEKSLEKMRKADIVVYLFDAAEET
                     KEELLKAEALLQAEARKHLVVGNKADKLEEVMLNEKFAGLDVLYISAKQDWRLELLKE
                     KLVDLVLQGAASKEHTIVTNARHYAALQQVHQSLVDIEAGLAQHIPGDLIALDIRRCL
                     HYLGEITGQITNEDQLDYIFSKFCIGK"
     gene            1504..2619
                     /locus_tag="VLL95_04670"
     CDS             1504..2619
                     /locus_tag="VLL95_04670"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HSR38184.1"
                     /translation="MAPDTITPVAPVERLYKTSRKLKRNLRIAYPAGKGHMVLHTELD
                     WDKAIDPISISEDGNISTFEVEADQPFLYFKPCLVMEDRSVHWSLGSNKLLLMEESDQ
                     RIVYPFFFSSESGRFSDLIEFPSAILGRAHQLRVYLPPGYDENTLATYPVALMQDGQN
                     LFFPEEAFLGQTWDVDQTSKTLRAMSLVDDFVIIGIRSADRMKEYTAPGYEAYARSLA
                     EEIVPEAQKKLRIGNDRRYRSVWGSSLGGVVSFYTVWQHPDVFGVGVCMSSTFSHKDN
                     LIERVLTEPVPDVAFYLDSGWPGDNYEVTMAMAMALVSRGFKYGHNLFHLSFPNAVHD
                     EASWGMRLHHPMQFINGAVARAARKTSGRVLAENPWN"
BASE COUNT          679 a          589 c          704 g          650 t
ORIGIN      
        1 aattgatgcc aggcaagaaa ttgcaggaaa aggaatcgca tacgctgcac gtgggttggt
       61 tgaaatggaa cgatgaacgc attgatgaag tggtggttag tttgtttcgc aatcccagga
      121 gctttacagg ggaggatgtg gtcgaactca gttgccatgg ttcgcccttc attttgcaga
      181 aagcattgga tgcctgtata atggcaggtg cacgcatagc caagcccggt gagttcactt
      241 taagagcctt cctgaatggc aagatggatt tggcgcaagc ggaagccgta gcggatatta
      301 tcgccagtca ttcggcagca gcgcaccata ccgccattga tcaaatgagg ggaggtttca
      361 gcaatgtgct cagcgccctt cgagacaaac tcatccagtt cagcgcactc attgaactgg
      421 agcttgattt tgccactgaa gatgtagagt ttgcagatcg ttccgcattg catcagttga
      481 tcagcaccat tcaactaacc gtaaacgaat tgctgcagag ttttcaatta ggcaatgtca
      541 tcaagcaagg ggtgaatgtg gccattattg gcaaacccaa tgcaggcaaa agcactttgc
      601 tgaacacttt gctgaatgaa aaccgggcca ttgtaagcga cattgcgggc actacccgcg
      661 acaccattga agaagtgctg aatattgacg gcctgctgtt caggcttatt gatactgcag
      721 gcatcaggga cagctctgat gaaatagaat caataggcgt tgaaaaaagc ctggaaaaaa
      781 tgagaaaggc ggacatcgtg gtctatttgt tcgatgctgc cgaagaaacg aaggaggagt
      841 tgctgaaagc agaagcgctg ctgcaggcgg aggcacgcaa acacctggtg gtgggaaaca
      901 aggcagataa actggaggaa gtaatgttga atgagaagtt tgccggtctg gacgtgcttt
      961 acatttcggc caaacaggat tggaggctcg agctcctgaa agagaaattg gtggacctgg
     1021 tgctgcaagg agcggcgtca aaggagcata ctattgtaac caatgccagg cactatgcgg
     1081 cattgcagca agtgcatcaa agcctggtgg atattgaagc tggattggca caacacattc
     1141 ccggcgatct gattgccctt gatatacgac gctgcctgca ttacctgggt gagattaccg
     1201 gccaaatcac caacgaagac cagttggatt atatcttctc gaaattctgt atcgggaaat
     1261 aagcagcgca ggaccaagcg ctagctggaa tcccttttgc caactgctcg aagggttggt
     1321 tttcatgcat tgtcttgttt cccaatcaaa gttgcgctct taataatagg tgatgtaggt
     1381 caacttattt ggcattgcga atacgtacct tactaacaac cccgctatga gattagcggg
     1441 tggaacgtat tcctgctatt tcaaaacccg gcaggctttc tggcttgccc caaattgaca
     1501 gctatggcac cagatactat tactcctgtt gctcccgtgg agcgcttgta caagacatcc
     1561 agaaaattga aacgtaacct tcgcatcgca tatcccgcag gtaaggggca catggtgttg
     1621 catacagaac tcgactggga caaggcaatt gatccgatca gcataagtga ggatggcaat
     1681 atttcgacgt ttgaagtcga agcagatcag cctttcctgt atttcaagcc atgccttgtg
     1741 atggaagacc gtagtgttca ctggagcctg ggatccaaca agctattgct gatggaagag
     1801 agtgatcagc gaatcgtata tccttttttc ttcagctcgg aaagtggtcg attttccgac
     1861 ctgattgagt tcccttctgc cattttgggg cgggcacacc aattgagggt atacctgcca
     1921 ccgggatacg atgaaaatac actggctacc tacccggttg cattgatgca ggatgggcaa
     1981 aatcttttct ttccggaaga agcttttctg ggccagacat gggatgttga ccagacaagc
     2041 aaaacccttc gggccatgag ccttgttgac gattttgtga tcattggcat ccgctccgcg
     2101 gaccgtatga aggaatatac cgctcctgga tatgaagcct atgcccgttc attggccgag
     2161 gagatcgttc cggaggcaca gaagaaattg cgcatcggga atgaccggcg ataccgctcg
     2221 gtatggggtt cttcgctggg aggagtggtt tcattttata ctgtttggca acacccggat
     2281 gtttttggtg taggggtgtg tatgtccagc actttttccc ataaagacaa tctcatagaa
     2341 cgggtgctga cagagcccgt acccgatgtt gcattttacc ttgacagcgg atggcctggc
     2401 gacaattacg aagtgaccat ggcgatggcc atggctttgg tgtcgagagg cttcaaatac
     2461 gggcacaacc tgtttcacct tagttttcct aacgctgtgc atgatgaagc ctcatggggt
     2521 atgcggctgc atcatcccat gcaattcatc aatggggctg tagcccgcgc cgcccgtaag
     2581 acctcgggac gtgtattggc cgaaaaccct tggaattaat gc
//
LOCUS       DATIQF010000288         2947 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_232569,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000288 DATIQF010000000
VERSION     DATIQF010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2947)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2947)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2947
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232569"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..249
                     /locus_tag="VLL95_04675"
     CDS             <1..249
                     /locus_tag="VLL95_04675"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR38185.1"
                     /translation="RRMTSLPAQKFDFKDRGLLKEGMAADIVVFDAATVKDKSTYADP
                     HQYSEGFKYVLVNGQVVVEDGKHTGTRSGVLLYGPGKQ"
     gene            263..1921
                     /locus_tag="VLL95_04680"
     CDS             263..1921
                     /locus_tag="VLL95_04680"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSR38186.1"
                     /translation="MRNLVMAIVALLTLMACKQSPTADLIVTNAIIWTGDAARPEVQA
                     MVIVNDTIAAIGSNDEMEKWKGSNSTIIDAKGQFITPGFIDGHVHFITGGMGLASVQL
                     RDAKTPSEFIQRIKAFAATVPAGTWIQGGDWDHENWGGQLPEASWIDSVTKDHPVFII
                     RLDGHMGLANSKAMQLAKLDASTADVAGGTIVRRAGQQPSGIFKDNAMDLVFKAIPNP
                     SADMEDKALQAAMNYVASNGVTTVHNMGDYGGGKDIDIFQRNNQKNALITRAYVSMPL
                     AQWSQLQTRVQQTGRGDKWVRIGVLKGFADGSLGSHTAAFFKPFTDAPKDSGFFVNSE
                     DSLRAWIWQADKAGLQCAIHAIGDKAINSILNIFEAAEKANGTRDRRFRIEHAQHIAP
                     TDIPRFAKLNVIPSMQPYHAIDDGSWAEKIIGSDRIKTTYAFRSLLEANAALAFGSDW
                     FVAPPTPLEGIYAAVTRRTLDDKNPNGWVPEQKITVEEALRAYTTGAAFAGFMENDRG
                     VLRPGMLADFVILEKDIRNIEPAAIREVKVMKTVVGGKVVFERK"
     gene            2085..>2947
                     /locus_tag="VLL95_04685"
     CDS             2085..>2947
                     /locus_tag="VLL95_04685"
                     /inference="COORDINATES: protein motif:HMM:TIGR01891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSR38187.1"
                     /translation="MRNMMLTLFAMGLCLSLTAQPTANKEYVLASVKKHEAELIKLSD
                     QVWAFAEIAMKETQSAKVLSDYAEQQGFKVTRGVAQIPTAFIAEYGSGKPIIGILGEF
                     DALPGLSQKAQPNREELNKGAAGHGCGHNMFGAASLGAAVAIKELIQAGKLKGTVRFY
                     GTPAEEDKAGKVWMAKAGVFNDLDVCLDWHPADETGANVNGSQAVIDYDFIFKGKSAH
                     AAYDPWNGRSALDAAELFTQGINYLREHVRPTVRMHYVYKQAGGVPNVIPEQATVWMW
                     IRDSKRSGVAAV"
BASE COUNT          816 a          728 c          799 g          604 t
ORIGIN      
        1 cggcgcatga catcactgcc agcgcaaaag tttgatttca aagatcgtgg cctattgaaa
       61 gaaggcatgg cggctgatat cgtggtgttt gatgccgcta ctgtgaaaga caaatcgacc
      121 tatgccgatc cgcaccaata cagcgaagga ttcaaatacg tactggtgaa tggacaagtg
      181 gtggtggaag atggcaaaca taccggtacc cgctccggtg tgctgttgta tggtccgggc
      241 aaacaataaa aaacttatgc gtatgagaaa cctggtgatg gccattgttg cactgctgac
      301 ccttatggca tgcaaacagt cgccaacggc tgatctgata gtgaccaatg ccatcatctg
      361 gacaggcgat gccgcgaggc ccgaagtaca ggccatggtc attgtaaacg ataccattgc
      421 cgccattggt agcaatgatg aaatggaaaa atggaaaggg tccaacagca ccatcattga
      481 tgcaaaagga caattcatta caccaggctt catcgatgga cacgtgcatt tcattaccgg
      541 aggcatgggc ctggcttcgg tgcaattgcg ggatgccaaa acaccctctg aattcataca
      601 acgcatcaaa gcatttgcgg ccaccgtacc tgccggtacc tggatacagg gcggcgattg
      661 ggatcatgaa aactggggcg gccaattgcc agaagcatca tggattgatt cggtgaccaa
      721 agatcacccg gtgtttatta ttcgactcga tgggcacatg ggcctcgcca attccaaagc
      781 catgcaactg gccaaactgg atgcctccac tgctgatgta gccggcggca ccatcgttcg
      841 tcgggccggc caacaacctt ccggcatttt caaagacaat gcgatggacc ttgtcttcaa
      901 agccatcccc aacccttcag ccgacatgga agacaaggcg ctgcaggccg ccatgaatta
      961 cgtggcttcc aacggcgtta ccaccgtgca caacatgggc gattatggcg gtggcaaaga
     1021 catcgacatc tttcagcgca acaaccagaa aaatgcactc atcacccggg cctatgtatc
     1081 gatgccattg gcacaatgga gccaactgca aaccagggtg caacaaaccg gccgtggtga
     1141 caagtgggtg cgcataggag tattgaaagg atttgccgac ggctcattgg gttcgcatac
     1201 cgctgccttt ttcaaaccat ttactgatgc acccaaagac tcaggttttt ttgtaaacag
     1261 cgaagacagc ctgcgtgcat ggatttggca ggccgacaaa gctggtttgc aatgtgccat
     1321 acatgccatt ggagacaaag ccatcaacag catcctcaat atttttgaag cggcagaaaa
     1381 agccaatggc acaagggatc gccgcttccg tattgagcat gcgcagcaca tagcgccaac
     1441 ggatataccc cgttttgcca aactgaatgt aatacccagc atgcaaccct atcatgccat
     1501 tgatgatggc agctgggctg aaaagatcat cggcagcgat cgcatcaaaa ccacctatgc
     1561 cttccgcagc ctgctggagg caaacgctgc tcttgcattt ggcagcgact ggtttgtggc
     1621 gccccctacc cctttagaag gcatttacgc cgcggtgacc cgccgcacac tggatgacaa
     1681 gaaccccaac ggttgggtac ctgaacaaaa gataacggtg gaagaagcat taagagccta
     1741 taccactggc gccgctttcg ccggattcat ggaaaatgat cgcggcgttt tgcggcccgg
     1801 catgctggcc gattttgtga tactggaaaa agatatccgt aacattgaac ccgctgccat
     1861 ccgtgaagtg aaagtgatga agaccgtagt gggagggaaa gtggtgtttg aaaggaaatg
     1921 aggaatgatg aatgatgatt taggaattag gaattaggaa ttaggaatta ggaattgagt
     1981 gtgagaggta agaagagccg attaagtatt tgtgtctgct gctgaaaaaa gtgcaggcaa
     2041 cgacaccaga tagcagtact aaaactgaca aaaaagaaaa ccatatgcgc aacatgatgc
     2101 tgacgctgtt tgcaatgggc ttatgccttt cgctgactgc acaaccgact gccaacaaag
     2161 aatatgtact ggcatcggta aagaaacacg aagcagagct gatcaaactg agtgaccagg
     2221 tatgggcctt cgcggaaata gccatgaaag aaacgcaaag tgccaaagtg ctgagcgatt
     2281 atgcggaaca acaagggttt aaagtgaccc ggggcgtagc gcaaataccc actgccttca
     2341 ttgctgaata tggaagcggg aaacccatca tcggcatcct cggtgagttt gatgcgctgc
     2401 ctggcctgtc gcaaaaagcg cagcccaacc gcgaagaact gaacaaaggc gccgccggtc
     2461 atggctgcgg ccacaacatg tttggcgctg ccagcctggg tgcggctgta gccatcaaag
     2521 aattgataca ggcaggaaaa ctgaaaggca cggtgcgctt ttacggcacc cctgcggagg
     2581 aagacaaagc cggcaaagta tggatggcca aagcaggtgt tttcaatgat ctcgatgtat
     2641 gcctcgactg gcacccggcc gacgaaaccg gggcgaacgt aaacggctcg caggcggtga
     2701 tcgactatga cttcatcttc aaaggcaaaa gtgcccatgc ggcatacgat ccttggaatg
     2761 gccggagtgc gttggatgcc gccgaattgt ttacgcaggg catcaactac ctgcgtgagc
     2821 atgtgcggcc cactgtacgc atgcactatg tatacaagca ggcaggtggc gttccgaacg
     2881 tgatacctga gcaggcaacc gtgtggatgt ggatacgcga cagcaaacgc agcggcgtgg
     2941 cggccgt
//
LOCUS       DATIQF010000289         2129 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_4423, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000289 DATIQF010000000
VERSION     DATIQF010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4423"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..687
                     /locus_tag="VLL95_04690"
     CDS             <1..687
                     /locus_tag="VLL95_04690"
                     /inference="COORDINATES: protein motif:HMM:NF022058.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38188.1"
                     /translation="LDARAGVVEFLLLNHPLDCPICDQAGECHLQDLSYEHGKVGTRY
                     EFQRRTFKKHDLGEFIQLHMTRCILCYRCVFTADQVSEKRAHGVLDRGDHAEIATFIE
                     KNLTNEFIGNVIDVCPVGALTDKTFRFKNRVWFTKPLYAHRDCDTRLPDGQECCGEVT
                     LWMRGDEVFRVTARKDEWGEIKTSEKTGKTGWICNDCRFHKKQASDWQIEGLADISRN
                     SVIDRANTKD"
     gene            862..1920
                     /gene="nuoH"
                     /locus_tag="VLL95_04695"
     CDS             862..1920
                     /gene="nuoH"
                     /locus_tag="VLL95_04695"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF004741.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HSR38189.1"
                     /translation="MSFSLLSIAFDWGLVLEKFILILVVVSISLVFAMYSTYAERKVA
                     GFLQDRLGPNRFGWFGLLQPVADAIKLFFKEEIIPNKANKILFVMGPGMAMLAALMTS
                     AVIPWGSSLQLFGRDISLQIADINVGMLYIFAVVALGVYGVMIGGWSSNNKFSLLAAI
                     RGASQNISYELAMGLSIIALLFVTGSLSLGDMVKLQQQQGWNVLYQPLGFLIFIVCAF
                     AECNRTPFDLPEAENELNFGYHQEYSSMKLGFYLFAEYINMFISGVVMSTLFFGGYDI
                     PFVNEAEWGAHWWVGLIGFAVLMTKACLFIFLFMWIRWTLPRFRYDQLMNLGWKGLFP
                     LALINMLITAVVVLLLNK"
BASE COUNT          543 a          473 c          544 g          569 t
ORIGIN      
        1 ttggatgccc gcgcaggtgt ggttgaattc cttttgctca accacccgct tgattgcccc
       61 atttgcgacc aggccggtga atgccatctg caggacctga gctatgagca cggcaaagtg
      121 ggcacccgct atgaatttca gcgccgcact ttcaaaaagc atgacctggg cgaattcata
      181 cagctgcaca tgacgcgttg catcttgtgc tatcgttgtg tctttactgc cgaccaggtt
      241 tctgaaaaac gtgcccatgg cgttctcgat cgtggcgacc atgcagaaat tgccaccttc
      301 attgaaaaga acctgaccaa cgagttcatc ggtaacgtaa ttgatgtgtg cccggtaggg
      361 gctttaaccg acaaaacttt ccgcttcaag aatcgggtat ggtttaccaa accgctctat
      421 gcccatcgcg attgcgatac ccgcctgccg gacgggcagg aatgctgcgg cgaagtgaca
      481 ctgtggatgc gtggcgatga agtatttcgc gttacagctc gcaaggatga gtggggcgaa
      541 atcaagacca gtgagaagac cggcaagacc ggttggattt gcaacgattg ccgttttcac
      601 aagaagcagg ccagcgactg gcaaattgaa ggactcgctg acatctcccg taactcggtg
      661 atcgacaggg caaatacaaa ggactgaaga aaccagaaga gacgatagag aaggtactgg
      721 atgggcgcaa accccgcttg ctgatggata tccattcagt aagcgaagtg aacaagccag
      781 agatcacatt gagtgaaatc aatggcccgg ccaccagcgc tgtgtttaag aaaaagcaat
      841 aactacaacc aatagagcaa catgtcattt tcattattgt ccatagcgtt cgactggggt
      901 ttggtgttgg agaaattcat actgatcctg gtagtggttt ccatttcgct ggtgtttgcc
      961 atgtacagca cgtatgctga gcgcaaggtg gctggctttt tgcaggatcg cctcggtccc
     1021 aaccgctttg gctggtttgg attgttgcag cctgtagcgg atgctatcaa attgtttttc
     1081 aaggaagaga tcattcctaa taaggccaac aagatcctct ttgtaatggg ccccggcatg
     1141 gccatgctgg ctgcgcttat gaccagtgcg gttattccct ggggcagttc actacaactc
     1201 tttggccgcg atatcagcct ccagattgcc gacatcaacg taggcatgct ctacattttt
     1261 gctgtagtag cattgggtgt atatggcgtg atgatcggcg gctggtcttc caacaacaaa
     1321 ttctcactgt tggcggccat tcgcggtgcc tcgcaaaaca tttcgtacga actggccatg
     1381 ggtctttcca tcatcgcctt gctttttgtg acaggttcac ttagcctggg tgatatggtg
     1441 aagcttcaac agcagcaggg atggaatgtg ctctaccagc cgttgggttt tctcattttc
     1501 attgtgtgtg cttttgccga gtgtaaccgt acaccgtttg acctgcctga agcggaaaac
     1561 gaattgaact ttggttacca ccaggaatac agttctatga agctgggatt ctacctgttt
     1621 gctgaataca tcaacatgtt catcagtggc gtggtgatgt caacactttt ctttggtggt
     1681 tatgatattc cgtttgtgaa tgaagcagaa tggggagcac actggtgggt tggattaatt
     1741 ggatttgcgg tattaatgac aaaagcctgc ttgttcattt ttctttttat gtggattcgc
     1801 tggacactcc caaggttccg ttacgaccag ttgatgaacc tcggatggaa aggcttgttt
     1861 ccattggctt tgataaacat gctgatcacg gcagtagtgg tgttattgct aaataaataa
     1921 acagttttaa aaaattaagc tgattgaaaa cggataaatt tgcgccgttc aatcctaagg
     1981 ataacaggaa tggaagcatt aacgaatagg aagatacagg tggaacgtaa gcccatgaca
     2041 ttttgggaaa aaatgtacct tcctgctatt gcaaaaggca tgggcattac catgagccat
     2101 ttcttcaaaa gaaaaccaac cattaaata
//
LOCUS       DATIQF010000290         3901 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_110977,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000290 DATIQF010000000
VERSION     DATIQF010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3901
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110977"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            126..608
                     /locus_tag="VLL95_04700"
     CDS             126..608
                     /locus_tag="VLL95_04700"
                     /inference="COORDINATES: protein motif:HMM:NF017936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSR38190.1"
                     /translation="MDRVNEWVQLLNMNPHPEGGYYAETYRSSFLTDTPGGPRPVATS
                     IYFLLTAGNFSAFHRIVSDEGWHHYEGDPVFIHTISPEGKYQCLQLGKDIAVGERPQA
                     MVPGGFWFASECKGPLGYALVGCTVSPGFDFKDFELADRDDLLRRYPTLSVLIERLTR
                     "
     gene            774..950
                     /locus_tag="VLL95_04705"
     CDS             774..950
                     /locus_tag="VLL95_04705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38191.1"
                     /translation="MKNNHSSSAPDFLANSCGWAFAIALTLLAAFSIFQVFVYMQAHI
                     HEEVAALSINQIIR"
     gene            complement(1000..2154)
                     /locus_tag="VLL95_04710"
     CDS             complement(1000..2154)
                     /locus_tag="VLL95_04710"
                     /inference="COORDINATES: protein motif:HMM:NF006569.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine aminotransferase"
                     /protein_id="HSR38192.1"
                     /translation="MAVQLTSKLPNVGTTIFTVMSALATEYKAINLGQGFPDYPMDEA
                     LTELVNKAMKDGFNQYVPMPGYLPLREAIAQKVQRLYGTTVDADKEITITPGGTYAIY
                     SAITAAIRPGDEVIVFEPAYDSYIPNIEINGGKAVRVPLQFPDYSINWQAVRNVITPR
                     TRMIVLNSPHNPTGAVLREADIHELRQVVAGTDIIIMSDEVYEHLIFDGLVHHSMLRY
                     PDLLERSFVAFSFGKVYNCTGWKLGYCIAPPSFTSEFRKVHQFNCFSCNSPMQVGIAS
                     FLQNEEAYLQLGNQLQQKRDYFRSLMANTPFKVIPSHGSYFELYSYEGVSDELEKDLA
                     VRLVKEFGVATIPTSAFYAEGNDNKVLRFCFAKKESTLEEAAARLQNFGK"
     gene            complement(2158..3240)
                     /locus_tag="VLL95_04715"
     CDS             complement(2158..3240)
                     /locus_tag="VLL95_04715"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate guanylyltransferase"
                     /protein_id="HSR38193.1"
                     /translation="MNSNRYVAIMAGGIGSRFWPMSRNRLPKQFLDVLNSGQSLLQAT
                     YKRFANIVPPENIFVITFEEYAPLVAKQLPQLPHENILREPSRKSTAPCVAYMAFKLM
                     RRDPDAAFIVSPSDHLVADEQGFADIAHRALEFAEQHAALVTLGITPTYPNTGYGYIQ
                     YDQEAVEDNVYRVKTFTEKPNLELAKTFIASGDFLWNAGIFVWKAKDILVAFEQHLPE
                     MNEVFAAEKDAFDTADEHGALERIYPQCTNISIDYGIMEKAHNVHIIPASIGWSDLGT
                     WNSAYENMEKDYLGNAVSGNNVMVIDATRNMVHVPHNKLVVLQGMDDYVVVDTNDILL
                     ICKKDKEQEIKDYMAEVKRNKGDKYL"
     gene            complement(3286..>3901)
                     /locus_tag="VLL95_04720"
     CDS             complement(3286..>3901)
                     /locus_tag="VLL95_04720"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HSR38194.1"
                     /translation="NTIIGMVGNTESYLARHAHHVLNTTVSQEACPNNLAPTSSTTAQ
                     MVMGDALAVCLMKLKGFSAEDFAKFHPGGTLGKMLYLRVSDLIADNPVPKVSPDTPLP
                     ETVIEMTQKRLGATAVVNEDGSLFGIVTDGDLRRMLERRQPIAGVKASDICSRQPKTT
                     TPDTLAVQALDVLRQYDITHLVVVANNQYVGILHLHDLVKEGLI"
BASE COUNT          883 a          958 c         1037 g         1023 t
ORIGIN      
        1 cggcagaaaa tggccattag gccgattgta ggaatggcaa aataggtgga cgagtggcga
       61 tattttgagg cggcaaaatg gcgggatggc cgataatcaa aggaaaagct gccaaatttg
      121 ggggtatgga cagagtaaat gaatgggtac aactattaaa tatgaatccg cacccggagg
      181 gagggtatta tgccgaaacg tatcggtcat catttttgac tgatacgcca ggcggtccaa
      241 ggccggtggc caccagtatc tatttcctgc tgacggccgg caacttttcg gccttccatc
      301 gcattgtttc agatgaaggc tggcaccatt atgagggcga tcctgttttc attcatacca
      361 tttcgccgga aggaaagtac caatgcctcc agttggggaa ggatatcgca gtaggagagc
      421 gcccacaggc gatggtgccc ggtggctttt ggtttgccag cgagtgcaaa ggccccctgg
      481 gatatgcatt ggtgggatgc acagtatcgc ccggttttga tttcaaggat ttcgaattgg
      541 ccgaccggga tgacctgctg cgccggtatc ccaccttatc tgttttgatt gaaaggctca
      601 cccggtaggg gaatatccag ggttgcctgc gctggtaaga atgacctccc cgttgactaa
      661 tcaattgata gccagtttct tggccgccat cttagaaaaa tgtttaattt attcttccat
      721 tctgcttgcg aagctgaaac aatagtggta gattgtttca aataccattc atcatgaaaa
      781 ataaccactc ttccagcgct cctgattttc tggccaattc atgtggatgg gcattcgcta
      841 ttgcactaac ccttttggca gctttttcca ttttccaggt atttgtttac atgcaggcac
      901 acatacatga agaggtggct gcactgtcca tcaaccaaat cattcgttga taaggacaag
      961 attcctgctt tgcggggtat tgggttttag cccttatggt tatttcccga aattttgtaa
     1021 acgtgccgct gcttcctcca gcgtactttc ctttttggca aaacaaaaac gcaacacctt
     1081 gttgtcattt ccctcagcat agaaagccga ggtggggatg gtagctaccc caaactcttt
     1141 cacgaggcgc acagccaggt ctttttccaa ttcgtcagat acgccttcgt agctgtacaa
     1201 ttcaaaatag ctgccatggg atggaatcac cttgaatgga gtattcgcca tgagcgatcg
     1261 gaagtaatct ctcttttgtt gcaattgatt tcccaactgc aggtaagcct cttcgttttg
     1321 caggaagctc gcaatgccca cctgcatagg gctgttgcac gaaaagcagt tgaactggtg
     1381 aactttcctg aactcgctgg taaacgatgg tggagctatg cagtagccca atttccagcc
     1441 ggtacagttg tacactttgc caaatgaaaa agcgacaaaa ctgcgctcca gcaaatcggg
     1501 gtagcgcaac atgctgtgat gaaccaaacc atcaaagatc aaatgctcat acacttcatc
     1561 gctcatgatg atgatatcgg tacctgctac tacctggcgc agttcgtgga tgtccgcttc
     1621 acgcagcacg gcaccagtag ggttgtgcgg cgagttgagt acgatcatgc gggtacgtgg
     1681 agtaatgaca ttgcgcaccg cctgccagtt gatgctgtaa tcgggaaact gcaaaggcac
     1741 ccgaacggct ttgccgccat tgatctcaat gttggggatg tagctatcgt aagcaggttc
     1801 aaaaacgatc acttcatcgc cggggcggat ggcggcagtg atggcgctat aaatggcata
     1861 ggtgccaccg ggtgtgatcg tgatctcttt atcagcatcc actgtggtgc catacaggcg
     1921 ttgaactttt tgggcgatgg cctcccgcag cggcaggtag ccgggcatag gcacatactg
     1981 gttgaagcca tctttcatgg ccttgttcac cagttctgtg agtgcttcat ccatgggata
     2041 atcaggaaaa ccctgtccca ggttgatggc cttgtattca gtagccaggg cactcatcac
     2101 tgtgaagatg gtggtgccta cattgggtag tttggaggtg agttgaacgg ccatgggtta
     2161 caaatacttg tcgcctttgt tgcgctttac ttcggccatg tagtccttta tttcctgctc
     2221 cttgtctttt ttgcaaatga gcagtatatc gttggtgtct accactacat aatcgtccat
     2281 gccttgcagc accaccagtt tgttgtgcgg cacgtgcacc atattgcggg tagcgtctat
     2341 caccatcaca ttgttgcccg acaccgcatt gcccaggtaa tccttttcca tgttctcgta
     2401 ggcactgttc caggtaccca aatcgctcca gccaatggag gccggaatga tgtgcacgtt
     2461 gtgggctttt tccatgatgc catagtcgat ggaaatattg gtgcattgcg ggtaaatgcg
     2521 ttccagggca ccatgttcat cagctgtatc aaaggcatcc ttttcggcgg caaacacctc
     2581 gttcatttca ggcagatgtt gttcaaaggc caccagaatg tcttttgctt tccaaacgaa
     2641 aatgccggca ttccaaagaa aatcgccgct ggcaatgaag gttttggcca gttccaggtt
     2701 gggcttttcg gtgaaagtct ttacgcggta tacattgtct tccactgcct cctggtcgta
     2761 ttgaatataa ccatagccgg tgttgggata ggtaggcgta atgcccaggg tgaccaaagc
     2821 cgcatgctgt tcggcaaatt cgagtgcacg atgcgcaatg tcggcaaagc cctgctcatc
     2881 ggccaccagg tgatcgctgg gcgatacaat gaaggcggca tcaggatcgc ggcgcatgag
     2941 tttgaaggcc atataggcca cacaaggcgc cgtgctcttg cggctgggtt cacgcagaat
     3001 attttcatgc ggcaattggg gcaactgctt ggccaccagc ggcgcatatt cttcaaacgt
     3061 gatgacgaaa atattttccg gaggtacaat attggcgaag cgcttgtagg tagcctgcag
     3121 cagcgactgc ccggagttca gcacatccag gaactgcttg ggcagccggt tgcgactcat
     3181 gggccaaaag cggcttccta ttccaccagc catgatggct acatatctgt tcgaattcat
     3241 gcttgctatt gtaagtgctg tacgtgggtg ctttgctgcc cggtattaaa tcaggccttc
     3301 ttttacgagg tcgtgcaaat gtaggattcc aacatattgg ttgttcgcca ccaccaccag
     3361 gtgggtaatg tcgtactgac gcagcacatc cagcgcctgc actgccagcg tgtcgggggt
     3421 ggtggttttg ggttggcggc tgcagatgtc gctggccttt acgccggcaa tgggctgtcg
     3481 gcgctccagc atgcggcgca ggtcgccatc ggtaacgatg ccaaacagac tgccatcttc
     3541 atttaccacg gcagtagcgc cgagtcgctt ttgggtcatt tcaatcaccg tttcgggcaa
     3601 cggcgtgtcg ggcgacactt tgggcaccgg gttgtcggca atcaaatcgg atacccgcag
     3661 gtacaacatc ttgcccagcg taccacccgg gtggaacttc gcgaaatcct ctgcactgaa
     3721 gcctttgagt ttcatcaggc aaacggccag cgcatcgccc attaccattt gtgctgtagt
     3781 gctgctggtt ggagccaggt tgttggggca ggcttcctgg cttaccgtgg tgttcaacac
     3841 gtggtgggca tgccgggcca ggtagctttc cgtattgccc accatgccaa taatggtatt
     3901 g
//
LOCUS       DATIQF010000291         1581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_278071,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000291 DATIQF010000000
VERSION     DATIQF010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278071"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(262..1128)
                     /locus_tag="VLL95_04725"
     CDS             complement(262..1128)
                     /locus_tag="VLL95_04725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38195.1"
                     /translation="MKMNYKKLLLAGGLAAFFMSCEKNLLEGNIPERFPNPESTSFVK
                     FIHAYSGKTPALTAGAGPNLFLYLSDSMNRINGNFLGFTQSAGQYPAPSTAATNTRSW
                     YTAMPVGNYSLISVLARVTGGVPTPIAGDTMLRTNISLAAGKFYTFFLGDNNPTAAAT
                     STTPVFTAVEDNWGGIAESKYKIRLANFFAWSDDVQELYSVREGRVIQTNISFRNVGD
                     FIELNAPNRLDTFYVRKVSGSSPAAVGANLYTVSLTPTAKRAYTIYTRGRLLSGTSTV
                     FQNSTPGLTTNF"
     gene            complement(1153..>1581)
                     /locus_tag="VLL95_04730"
     CDS             complement(1153..>1581)
                     /locus_tag="VLL95_04730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38196.1"
                     /translation="DKATALQAYVAGINGHFDHLTKFTGYTSITPAARAAFLANTNIV
                     PANAADLTRSQILMQKFIALYGYGFVEIWVDLIKTKYDPNVWIGFTFPPTFFPDNGGK
                     PAYRFRPRYNSEYLWNVDALKKIGGFDADYHTRESWLVNP"
BASE COUNT          398 a          349 c          419 g          415 t
ORIGIN      
        1 tatcctggtg ttcaacacat atacgtcctg tatgcccaca ctgtcgcagg tgcgcatcac
       61 agcgctgatg ttatgcgggt caaaaacatt ctcgagcacc accgtgagat cgggctgtcg
      121 cctgtcggcc actgcggtca gtttgttgta acgctccggt gtcatggtct tcgaatttgt
      181 tgtacaaaaa aatgaaatct ggttcattaa aaaggccgcc ccggaaggac agcctttctt
      241 ttggatacac cagaacaatc atcagaagtt ggtagtgagg cccggtgttg aattttggaa
      301 cacggtagag gtgccggaaa gcaatcttcc ccgggtataa atggtatatg cccgctttgc
      361 tgttggagtc aggctaactg tatacaagtt agcgcccaca gcagctggtg aagagccact
      421 cacctttctt acgtagaagg tatcaagacg gttgggtgca ttgagttcaa taaaatcacc
      481 cacatttctg aatgaaatat tagtctgtat taccctgcct tctcttacgg agtatagctc
      541 ttgtacatca tctgaccagg caaagaaatt ggccagtctt attttgtatt tgctttcagc
      601 aatgccgccc caattgtctt ctacggctgt aaaaaccggc gtagtagaag tggcagcagc
      661 ggtagggtta ttatctccaa ggaagaaagt ataaaatttc ccggctgcca gtgaaatgtt
      721 ggtccgaagc atggtatcac ctgcaatggg agtgggcacg ccgcccgtca ccctggccaa
      781 aactgaaatc aaagaataat tacccacggg catagctgta taccaactcc tggtattggt
      841 agcggcagtg ctgggtgccg ggtattgacc agcactttgt gtgaacccca ggaagtttcc
      901 attgatgcga ttcattgaat cgctcaaata gaggaagagg ttcggacctg caccggccgt
      961 cagggcaggt gttttcccgg agtatgcgtg gatgaatttc acaaatgagg ttgactcagg
     1021 attgggaaaa cgctcgggaa tattaccctc cagaaggttt ttttcgcagc tcatgaagaa
     1081 ggctgccaaa ccgccagcca acaagagctt tttataattc attttcattg tagttaattg
     1141 ttggttgaag aattaagggt taacaagcca ggattctctt gtgtggtaat cggcgtcgaa
     1201 acctccaatc tttttgaggg catctacatt ccacaggtat tccgagttgt aacgggggcg
     1261 gaagcgatag gctggcttgc ctccgttgtc ggggaagaag gtgggcggga atgtaaatcc
     1321 tatccacaca ttggggtcgt atttggtttt gataaggtca acccaaatct ctacaaaacc
     1381 gtatccatac agcgcaatga atttctgcat caggatctgg ctgcgggtga ggtcggcagc
     1441 attggcgggt acgatgttgg tattggcaag gaaggcagcc ctggcggcag gagtaataga
     1501 tgtgtatcct gtgaatttgg tcagatggtc gaagtgccca ttgataccgg ccacataggc
     1561 ttgcagcgcg gtggccttat c
//
LOCUS       DATIQF010000292         2099 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_50207, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000292 DATIQF010000000
VERSION     DATIQF010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2099
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50207"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..585
                     /locus_tag="VLL95_04735"
     CDS             <1..585
                     /locus_tag="VLL95_04735"
                     /inference="COORDINATES: protein motif:HMM:NF012529.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSR38197.1"
                     /translation="GLQERLLSRFRWGLSADLQMPDYETRIEILERKMKNDGLDMPKE
                     VVKYLAYNINTNIRELEGALISLLAQSSLNKREIDLELAKKVLRNHIKTSSKEITIEN
                     IQKMVCEYFDVPYEKLQQKTRKREIVQARQITMYLAKAFTKNSLKTIGEHFGGRDHTT
                     VIHSCQTVKDLMDTDSVFKENVMELTQKVQLAAL"
     gene            735..1415
                     /locus_tag="VLL95_04740"
     CDS             735..1415
                     /locus_tag="VLL95_04740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38198.1"
                     /translation="MKRIMMAIMAMAILAGAQAQPGQGPRPGGKGMGGRNGSPMMEQL
                     NLTPQQKEQAKKLQEQFRQQMQSLNQNESITVKEQRDRREKLMKEHRQAMQSLLTPDQ
                     KKQLEKQQQSRQEIAKHQQAIRLERMKSQLNLTEDQAKAVQKHMENNRKQMESLRSNE
                     SLDRTARRDQMQKMRDQSKAEMEKILNKEQWQQLQQWQNRQPMRSGPRGGGINCPNGQ
                     RQGPRWGK"
     gene            1506..>2099
                     /locus_tag="VLL95_04745"
     CDS             1506..>2099
                     /locus_tag="VLL95_04745"
                     /inference="COORDINATES: protein motif:HMM:NF013045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein"
                     /protein_id="HSR38199.1"
                     /translation="MATPKKGSAGFSKFVNPAPKGAKKKEAFRQEKRTARKETEAFFE
                     EKKRKQTIEKRTPPPATAPAADLKGKRAGKPDIKPAPAAKEVEESMPLNKFIAHGGIC
                     SRRDAAALVKEGKVKVNGKVILEPGFKVNPSDEVKANGKLVVRKKNLVYILLNKPKDY
                     ITTNEDDKGRKTVLDIVKNATDERIYPVGRLDRNTTGV"
BASE COUNT          700 a          525 c          530 g          344 t
ORIGIN      
        1 ggtttgcagg agcgcttgct gagccgtttc cgctggggcc tgagcgccga tctccaaatg
       61 ccggattacg aaacccgcat cgagatcctg gagcgcaaaa tgaagaacga cggactggac
      121 atgccaaagg aagtggtgaa atacctggcc tataatatta ataccaacat tcgcgaactg
      181 gaaggcgccc tcatcagcct gctggcacaa agcagcctga acaagcggga gatcgacctg
      241 gaactggcca agaaagtgct gcgcaaccat atcaaaacca gcagcaagga aatcaccatc
      301 gagaacatcc agaaaatggt atgcgaatat tttgatgtgc cttacgaaaa gctgcagcag
      361 aaaacccgca aacgcgaaat cgttcaggct cgtcaaatta ccatgtacct ggccaaggca
      421 ttcaccaaga attctctgaa aaccataggt gagcattttg gcggtcgcga ccataccact
      481 gtgatccaca gctgccaaac tgtaaaggac ttgatggaca ccgacagtgt attcaaggaa
      541 aatgtgatgg agctgacaca aaaggtgcag ctggcagccc tctgatactt caactaacaa
      601 caatgtcaag aaaaagcaac ctccaacggg ttgctttttt tgttgcacgg ttaattatgg
      661 ttaatggctt aaaccgttgt tttccgggca ggtctattgt aagtaaagag caaaaaacat
      721 taaaacacaa acacatgaaa aggattatga tggccataat ggcaatggca atactggcag
      781 gtgcgcaggc ccagcctggc cagggtcccc gcccgggtgg aaaaggaatg ggtggacgca
      841 acggcagccc aatgatggaa caactcaacc tcacacccca gcaaaaagag caggccaaaa
      901 agttgcagga acaattcagg caacaaatgc agtcgctcaa ccaaaatgaa tcgatcacag
      961 tgaaagagca acgtgaccgc cgtgaaaagc tgatgaaaga acacaggcaa gccatgcaaa
     1021 gcctcctcac tcctgaccag aaaaagcaac tggaaaagca acagcaaagc aggcaggaaa
     1081 ttgccaaaca ccagcaggca ataagattgg agcgcatgaa gtcgcaattg aacctgactg
     1141 aagaccaggc aaaggctgtg caaaagcaca tggaaaacaa ccgcaagcaa atggaatcat
     1201 tgcgcagcaa tgaaagcctc gacagaaccg cccgccgcga tcagatgcag aaaatgcgtg
     1261 atcaatcgaa agcggaaatg gagaagatcc tgaacaagga acaatggcag caattacagc
     1321 aatggcagaa caggcagccc atgcgcagcg gacctcgcgg tggtggtatc aactgcccca
     1381 atggtcagcg ccagggtcca cgctggggca aataatgcac taacgatggc ctaaaacaaa
     1441 acagggcacg gaacctccgg agccctgttt tgtttgctcc ccggtttact gccatctttg
     1501 cacctatggc aacacccaaa aaaggaagcg ctggcttttc aaaatttgta aaccccgccc
     1561 caaagggagc aaaaaagaaa gaagcgttcc gtcaggaaaa aagaacagcc cgcaaggaaa
     1621 ctgaagcgtt cttcgaggaa aaaaaacgca agcagaccat tgaaaaaaga acgccgccac
     1681 ccgccacggc gccagcagcc gatctgaagg gcaaacgggc tggaaaaccg gatatcaaac
     1741 cagcgccggc agccaaagaa gtggaagaga gcatgccgct gaacaagttc atagcccacg
     1801 gaggcatctg cagccgccgc gatgccgcgg cacttgtgaa ggaaggaaag gtgaaagtaa
     1861 acggcaaagt gatattggaa ccgggcttta aagtgaaccc ttccgatgaa gtaaaagcca
     1921 acgggaaact ggtggttcgc aaaaagaacc tcgtgtacat tttgctcaac aagcccaaag
     1981 actacatcac caccaatgaa gatgataaag gccgcaagac cgttttggac attgtaaaga
     2041 atgccactga tgagcgcatc tacccggtag gccgcctcga caggaatacc accggtgtg
//
LOCUS       DATIQF010000293         1744 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_263074,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000293 DATIQF010000000
VERSION     DATIQF010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263074"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..979
                     /gene="trpD"
                     /locus_tag="VLL95_04750"
     CDS             <1..979
                     /gene="trpD"
                     /locus_tag="VLL95_04750"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HSR38200.1"
                     /translation="LHLFEHKTLSRQQAYEVLLAIGKGQYNEHEITAFMTVYLMRSIT
                     IDELQGFRDALMELCVPVDLNGHAVMDIVGTGGDGKDTFNISTLSCFIVAGAGQKVAK
                     HGNYGASSISGASNVMEQLGYKFSNDNGKLLKEVEEANICFMHAPLFHPALKTVGPIR
                     RNLGVRTFFNMLGPMVNPANPAYQLVGVYNLEMARTYNYLLQQSGKAFTIIHSLDGYD
                     EISLTNDTKVITNYGEKVMTPEQLGKRLVMPQDIAGGNSVEAAAKIFKDIINGKGTWA
                     QNAVVLANAAMALNSTGQYSSYDDAYAAAVDSLESGKAKQCLEKLISLQ"
     gene            980..>1744
                     /gene="trpC"
                     /locus_tag="VLL95_04755"
     CDS             980..>1744
                     /gene="trpC"
                     /locus_tag="VLL95_04755"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: protein motif:HMM:NF001377.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HSR38201.1"
                     /translation="MKNILDTIVARKHEELALAKHSVCLSLLQDKAAYQAPCVSAVQR
                     IRNGVQPAVITEFKRRSPSKGWIKEGAAVEDIVPDYCSNGAAAISVLTDTDFFGGSLA
                     DLELAASLVDCPLLRKDFTIDAYQLHEAKAYGADLILLIAAILSPAQVQELAAEAKSI
                     GLEVLLELHAEEELAHVCEAVDMIGINNRNLKNFEVNLDHSIRMAAALPAHKLRIAES
                     GIHSAEAAVYLKQHGFDGFLIGEYFMKQPDPAIAFAE"
BASE COUNT          456 a          469 c          459 g          360 t
ORIGIN      
        1 gttacacctc ttcgaacaca aaaccctcag ccgccagcag gcttatgaag tattgctggc
       61 cattggcaag gggcaataca acgagcatga gatcacggct ttcatgactg tgtacctcat
      121 gcgcagcatt accatcgatg aactgcaagg ctttcgggat gcgttgatgg aactctgcgt
      181 gccggttgat cttaatggtc atgcggtgat ggacatcgta ggcactggtg gcgatggcaa
      241 ggacacgttc aacatctcca cactgtcctg tttcattgtg gcaggtgccg ggcaaaaagt
      301 ggccaagcat ggcaactacg gcgccagcag catcagtggc gccagcaatg tgatggagca
      361 actgggttac aaattcagca acgacaatgg taagttgctc aaagaagtag aagaagcaaa
      421 catttgcttc atgcatgctc cactgtttca cccggcatta aaaaccgttg gaccaatccg
      481 ccgcaatctc ggtgtgcgca ccttcttcaa tatgctcggc cccatggtga acccggccaa
      541 cccggcttac cagttggtgg gggtatacaa cctggagatg gcccgcactt acaactacct
      601 gttgcagcaa agcggcaagg catttaccat catccacagc ctcgatggct atgatgaaat
      661 ttcgctgacc aacgacacca aggtgatcac caactacggc gaaaaagtga tgacaccgga
      721 gcagttgggc aagcgcctgg tgatgccgca ggatattgcc ggtggcaaca gtgtggaagc
      781 ggccgcaaaa attttcaaag acatcatcaa cgggaaaggt acctgggcgc aaaacgccgt
      841 agtgttggcc aatgcagcca tggcactcaa tagtaccgga caatacagca gctacgatga
      901 tgcttatgct gcagctgtgg acagcctcga aagcggcaaa gccaaacaat gcctcgaaaa
      961 actcatcagc ctgcagtaaa tgaaaaacat tcttgatacc atcgtagccc gcaagcacga
     1021 agaactggcc ctcgccaaac atagcgtgtg cctcagcctg ttgcaggaca aggcggctta
     1081 ccaggcacct tgcgtttctg ccgtacagcg cattcgaaac ggggtgcagc cggccgtcat
     1141 caccgagttc aagcgccgtt ctcccagcaa aggatggatc aaagaaggcg ctgcggtgga
     1201 agacatagtg ccagactatt gcagcaatgg cgcggccgcc atcagtgtac tcaccgatac
     1261 cgattttttt ggcggctcac tcgctgatct cgaactcgct gcctcgctgg tagattgccc
     1321 gttgctgcgc aaagatttta ccatcgatgc ttaccagctg cacgaagcca aagcttacgg
     1381 cgcagactta attctgctga ttgctgctat cctttcaccg gcgcaggtgc aggaactggc
     1441 ggccgaagcc aaaagcattg gcctggaagt attgctggaa ctgcatgcgg aagaagaact
     1501 ggcgcatgtg tgcgaagcag tggacatgat aggcatcaac aaccgcaacc tcaaaaattt
     1561 tgaagtcaac cttgaccaca gcattcgcat ggcagcggcc ttgcctgcgc acaaactgcg
     1621 catcgccgaa agcggcatcc acagtgccga ggcggccgta tatttgaagc aacacgggtt
     1681 cgacggattt ctgattggtg agtatttcat gaaacaaccc gatcctgcga ttgcctttgc
     1741 cgaa
//
LOCUS       DATIQF010000294         9486 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_65256, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000294 DATIQF010000000
VERSION     DATIQF010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 9486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9486
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65256"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..524
                     /locus_tag="VLL95_04760"
     CDS             <1..524
                     /locus_tag="VLL95_04760"
                     /inference="COORDINATES: protein motif:HMM:NF020083.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38202.1"
                     /translation="PITFSIAMNDYGFELLSDKPIPVDDSNVHDLFTTDDLLTAMQHS
                     ANHVEMAMRKFRDIAVIGGLVFQGMPGEQKKARHLQASASLIFKVFRDFDPNNILLRQ
                     AFQEVYEQQMEEVRLRQALQRIQSHPIIITWPERFTPLSFPIIADGLNRNNLSSENLE
                     ERIKKMAAQLNAK"
     gene            complement(539..979)
                     /locus_tag="VLL95_04765"
     CDS             complement(539..979)
                     /locus_tag="VLL95_04765"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSR38203.1"
                     /translation="MASINPYIHFNGNAEQAFTFYQSVFGGDFANIVRFKDMQFEGAP
                     NNEKEGEKIMHIALPIGKHNVLMGSDTPEMLGKHSEMETRSKISISAESREEADHLFH
                     GLSAGGHVEMPIADSPWGSYFGMFRDKFGIEWMIDFDPKFKGHP"
     gene            1139..1762
                     /locus_tag="VLL95_04770"
     CDS             1139..1762
                     /locus_tag="VLL95_04770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38204.1"
                     /translation="MRLPFTLLTIGITAMLSVKAQTVRLLNIAQSDQNNRTIYVGIEN
                     KLLMQPAVDTSLIKVQEASWRTNGDTLIVRPTRTGIIHVILQSETNTTDVRLTAKMLP
                     KIDLILEGHFPHKIIKGRFEPSQRLVLVSDRDPEGYLRNMRVVSFLAVINNDSFVNMG
                     ETINPALLERIRRAPNQSMISISRVLYRNMLTGATYTIANTHRYTIK"
     gene            1807..2451
                     /gene="pdeM"
                     /locus_tag="VLL95_04775"
     CDS             1807..2451
                     /gene="pdeM"
                     /locus_tag="VLL95_04775"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR04123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response
                     endonuclease PdeM"
                     /protein_id="HSR38205.1"
                     /translation="MTLKHEWHNQTFWLSGQRLMYWEEQKTIIASDLHLGKSGHFRKS
                     GIAIPQQVMQQDLIRLFDQVQFFKPSRLLIVGDLFHSHSNKEMDWFARWRNDLSWLHI
                     LLVRGNHDILHDDWYAANHIELSTEWQEAGIHFIHEPVADVTYEQPLISGHVHPGIRV
                     EGIARQSLRLPCFYFGRQHCILPAFGLFTGTHPIKPKKHEVVFAIGEQTVIPIR"
     gene            2455..3357
                     /locus_tag="VLL95_04780"
     CDS             2455..3357
                     /locus_tag="VLL95_04780"
                     /inference="COORDINATES: protein motif:HMM:NF013046.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase"
                     /protein_id="HSR38206.1"
                     /translation="MPYIAYDPIYAHPLPEGHRFPMLKYELIPEQLLHEGSITIHELH
                     APQPCPDEIVLWTHDASYLHDLKALALTPQHVRRIGFPLSEQLVQRELVITQGTIDCC
                     HAAIKNGVGLNVAGGTHHAFADRGEGFCLLNDMAVAANYLLHMKMVRQILIVDLDVHQ
                     GNGTASLFKDKQEVFTFSMHGGHNYPFIKEQSDLDVPLPDGVNDETYLDLLHHHLHQL
                     FQTVKPEFVFFLSGVDILATDRYGKLKVSIEGCKRRDQLVFEMCKRHQIPCAVAMGGG
                     YSPDVRTIVEAHCHTFRVAKSLFD"
     gene            complement(3389..3994)
                     /locus_tag="VLL95_04785"
     CDS             complement(3389..3994)
                     /locus_tag="VLL95_04785"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38207.1"
                     /translation="MTYLQVLKKDKKLTEILSDDAFELTLHPNIPLRLMHAIMSQQLS
                     TKVADVFRKRFHELFPHANPTAREVLKIPYETLRSIGLSHAKATYVHNVADFCVAHQI
                     TDKKLLARSNEEVISLLTEIKGVGRWTVEMLLMFSLGREDVFPVDDLGIQQAMIKLYR
                     LRTTEKKALQQKLQRIAAKWSPYRTYACMHLWAWKDGGPFE"
     gene            4042..4719
                     /gene="mnmD"
                     /locus_tag="VLL95_04790"
     CDS             4042..4719
                     /gene="mnmD"
                     /locus_tag="VLL95_04790"
                     /inference="COORDINATES: protein motif:HMM:NF033855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016645 - oxidoreductase activity, acting
                     on the CH-NH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD"
                     /protein_id="HSR38208.1"
                     /translation="MKRELQVTADGSHTFQLSESDITFHSRFGAIQESEHVYIGAGLQ
                     PFIGKAEPIRVFEMGFGTGLNAFLSYMEAREEKVKVEYDAVEAFPLEKEEYSQLNYAH
                     VLRKQGFADTLQMLHQAPWGKTIKLGQFFTLVKHHSKIEDFQSNKKFHVIFYDAFAPT
                     AQPELWTEDVFYKLYDMLLDGGILTTYCSKGDVRRTLQSVGFDIEKLPGPRGKREMVR
                     AFKPFAE"
     gene            4716..5153
                     /locus_tag="VLL95_04795"
     CDS             4716..5153
                     /locus_tag="VLL95_04795"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSR38209.1"
                     /translation="MKTRLILLGWMLGMTLTSLAQSFSASDEKNIRLVLSEQQDAWNK
                     GDIGAFMTGYWKSDSLTFTGANGITYGWENTYQNYLKRYDSPAKMGQLTFTILEVLPM
                     GNDYCKVIGKWFLKRKMGDIGGHFTLVFRRFGNGWKIISDHTS"
     gene            complement(5150..5395)
                     /locus_tag="VLL95_04800"
     CDS             complement(5150..5395)
                     /locus_tag="VLL95_04800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38210.1"
                     /translation="MEPEVRKFLAVIVQCISMGILWMLLNTFFGIKLGLLFLDEKITV
                     WHYVYYACMIASFIALVWYIRNKIKSVPKFGLDEEGN"
     gene            5568..7022
                     /gene="miaB"
                     /locus_tag="VLL95_04805"
     CDS             5568..7022
                     /gene="miaB"
                     /locus_tag="VLL95_04805"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HSR38211.1"
                     /translation="MHELPQTEAEVLQALKSHDESRQGESYAPFALDPNQYRKHFYIE
                     SYDCQMNFSDSEIVASILNQHGFGATRNYEEADLILLNTCSIREKAEQTVRKRLSEFR
                     KLKEGKPGMLVGVLGCMAERLKTKLLEEEKLVDMVVGPDAYRTLPGLIEEAETGQKAV
                     NVILSRDETYADISPVRLDSNGVTAFVSIMRGCNNMCSFCVVPFTRGRERSRDDVSIV
                     AECQDLYDRGFKEVTLLGQNVDSYYFVHEDGRIVNFANLLEKVALISPDLRVRFSTSH
                     PKDITDDVLHTMARYENICKYIHLPVQSGSTRVLQLMNRTYTREWYMAKVDRIREIMP
                     DCGISSDVIAGFCTETEEDHQDTLSIMEYSRYDMSYMFFYSERPGTLAARRYADDIPE
                     AIKKRRLQEIVELQNRLSRESNQQDIGKTYKVLIEGDSKRSDKDWMGRNSQNKVVVFP
                     KENHDLKKGDYVWVKVHDSTQATLLGNIVETHQA"
     gene            7054..8349
                     /locus_tag="VLL95_04810"
     CDS             7054..8349
                     /locus_tag="VLL95_04810"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HSR38212.1"
                     /translation="MTDLQSIKNRFGIIGNSPALNHALNVAVQVANTDLSVLISGESG
                     VGKEVFSQIIHALSPRKHNPFIAVNCGAIPEGTIDSELFGHEKGAFTGAVDARKGYFE
                     TVNGGTIFLDEIGEMPLGTQARLLRVLETGEFIRVGSSKVQKTDVRVIAATNKDLLEE
                     SHKGKFRKDLYYRLNSVPIRIPSLRDRQDDIPLLFRKFVIDFAERYNTTPVQLDDEAR
                     RMLMTYPWRGNVRELKNIAEQISVLSKSKMITAAELKPFLPDMPLNNLPVLASATHAP
                     AGFVSETTFATERDILYKFIFDLKKDVTDMKRMFVEIVNNPNAAQVTGLQEILNDHKH
                     AVHPDIQVPYAVPAKPITASAAGEPVYIPHAPTTEQAAEFDHHEEVEDSLNIADMEKD
                     LIIKALKKHRSRRKDAAADLGISERTLYRKLKEYDIEEL"
     gene            8398..8961
                     /locus_tag="VLL95_04815"
     CDS             8398..8961
                     /locus_tag="VLL95_04815"
                     /inference="COORDINATES: protein motif:HMM:NF016290.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptE family protein"
                     /protein_id="HSR38213.1"
                     /translation="MGEMVMSRMSLWALTAKGLGSRMRFSQLVVLLSALLFVSCKVYT
                     FKDVSIPPEVKTVKVNFIENRARYVNPQLSPRLTDRLQQKIVSQTRLTRSNNDDADWV
                     ISGYVSGYDVTTSGISGSQASTNRLNVTVQITLMDNVAQKKSEYSVVKIFDFPAQATL
                     QQAEQALGEELIRGVSDEIFNRIFSNW"
     gene            8986..>9486
                     /locus_tag="VLL95_04820"
     CDS             8986..>9486
                     /locus_tag="VLL95_04820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38214.1"
                     /translation="MHAKAQHILQSLRHQSNDAVSFDELSSQFPWYATAWLGKCLQEG
                     VSAESLEKLALTVHEPLRLQTLLSPAVYPQAIMEKAAEPEVSIGEEEEPATEEVVATA
                     SGEESAMSQAAENAGMVQTALEAVETIAEEKPALMASPEASSDSDDELLFQPYHNVDY
                     FASQGIK"
BASE COUNT         2555 a         2382 c         2325 g         2224 t
ORIGIN      
        1 tgcccatcac attcagcatt gccatgaatg attatggctt cgaattgctg agcgacaaac
       61 ccatacctgt agacgacagc aatgtgcacg atttatttac cactgacgat ctgctcactg
      121 ccatgcagca cagtgccaat cacgtagaaa tggccatgcg caagtttcgg gacattgcgg
      181 tgattggcgg acttgttttc cagggtatgc ccggcgagca aaagaaagca cgacacctgc
      241 aggcatcggc ttcgcttatt ttcaaagtct tccgcgattt tgatcccaac aacatcctgc
      301 tgcggcaggc cttccaggaa gtatatgagc agcaaatgga ggaagtgaga ttgcgtcagg
      361 ccctgcaacg catccagtca catcccatta tcatcacctg gcctgaacga ttcacgccac
      421 tctccttccc catcatcgcc gatgggctga acaggaacaa cctttcatcg gaaaacctgg
      481 aggaaaggat caaaaaaatg gcggcacaac tgaatgcgaa atgatggtgc tttattgttt
      541 atggatgtcc tttgaatttc gggtcaaagt ctatcatcca ttcaatacca aacttgtccc
      601 tgaacatacc aaaataagaa ccccagggac tgtctgctat tggcatttct acatgtccgc
      661 cagcggaaag tccatgaaat aagtggtctg cttcttcccg gctttctgca ctgatagaaa
      721 tcttgctacg ggtttccatc tcgctgtgtt tgcccaacat ctccggggtg tcgcttccca
      781 ttaaaacatt gtgtttgcca attggcaaag cgatgtgcat gattttctcc ccttcttttt
      841 cattattggg agcaccttca aattgcatgt ctttaaagcg aacgatgttg gcaaagtcgc
      901 cgccaaaaac tgattgataa aaagtaaagg cttgttcagc attgccgttg aaatgaatgt
      961 aaggattgat ggatgccatg tttaccatgt ttaatttttc caaatttcct tttcgctggc
     1021 cgatattccc acccgctcat cctatttttt cattaggtca atttgaaaaa gcttttctat
     1081 tttatgattg ccgtagccac agatcaattt atattgtagt gccatttaaa tcagcatcat
     1141 gcgtttacca ttcacgctcc tcaccatcgg aatcaccgcc atgctttctg taaaagcaca
     1201 aacggtgaga ctcctcaaca ttgcgcagtc cgatcaaaac aaccgcacta tttatgtcgg
     1261 cattgaaaac aaattgctca tgcagcccgc tgtagatacc agcctgatca aagtgcagga
     1321 agcctcgtgg cggacaaacg gagataccct gatagtaagg cccacccgaa caggtattat
     1381 tcatgtgatc cttcaaagcg aaacaaatac taccgatgta agacttacag ccaaaatgct
     1441 tcccaaaatt gacctcatac tcgaaggtca ctttccgcac aaaattataa agggtcgttt
     1501 tgaacccagc caacggctgg tgcttgtttc ggacagagac cccgaaggtt atttgcgaaa
     1561 catgcgggtg gtcagtttcc tggcagtcat caataatgat agttttgtaa atatgggaga
     1621 aaccatcaac cctgcgttgt tggaaagaat acgccgcgcc cccaatcagt caatgatcag
     1681 tataagcagg gtattgtacc ggaacatgtt gacaggtgcc acttacacca tcgccaatac
     1741 ccatcgctac acaataaagt agactgtaaa gccttaaaga aaaaattgca gcaaatttgc
     1801 cgcccgatga cattgaaaca tgagtggcac aatcaaacgt tttggctgag tggtcagcgg
     1861 ttgatgtatt gggaagaaca aaagaccatt attgccagcg atctgcattt gggcaaaagc
     1921 gggcatttcc ggaaaagtgg catcgccatt ccgcagcagg tgatgcaaca agatctcatc
     1981 aggcttttcg accaggtcca gttttttaaa ccatcgcgac tgctgatagt aggcgatctt
     2041 tttcacagcc attccaacaa agaaatggat tggtttgccc gctggagaaa tgacctgtcg
     2101 tggctgcaca tattgctggt aagaggtaat cacgacatac tgcatgatga ctggtatgcc
     2161 gccaaccaca ttgaactgag cacagaatgg caggaagccg ggattcattt cattcatgag
     2221 ccggtggccg atgttacgta tgaacagccg ctcatcagcg ggcatgtaca cccgggcata
     2281 cgggtggaag gcattgcacg ccaaagcctg cgcctgccct gtttttattt tggccgccag
     2341 cactgcatcc tgccggcctt tggattgttt accggcaccc atcccatcaa accaaaaaag
     2401 catgaggttg tttttgccat tggcgaacaa accgttatac ccatacgctg atccatgccg
     2461 tacatcgctt acgaccccat ttatgcgcat ccgctgcccg aaggacatcg cttcccgatg
     2521 ttgaaatacg aactcattcc cgagcaattg ctgcatgaag gaagcattac catccacgaa
     2581 ttgcatgcgc cacaaccctg ccccgatgag atcgttctct ggacgcatga tgcctcctat
     2641 ctccacgact tgaaagcact cgcattaacg ccacagcatg tgcgccgcat cggattcccg
     2701 ttgagcgagc aactggtgca gcgggaactg gtcattacac aaggcaccat cgattgctgc
     2761 catgccgcta taaaaaacgg cgttggcctg aatgtggccg gaggcaccca ccatgcgttt
     2821 gccgaccgtg gcgaaggatt ttgcctgctc aatgacatgg cggtagcggc caactattta
     2881 ctacatatga aaatggttcg gcaaatactc atcgttgacc tcgacgtaca ccagggcaat
     2941 ggcaccgcca gcctttttaa ggataagcag gaggtgttca cgttcagcat gcacggcggg
     3001 cacaactatc ctttcattaa agaacagagt gatttggatg tgccactgcc cgacggcgtg
     3061 aatgatgaaa cttacctgga ccttttacat caccacctgc accaactttt tcaaacggta
     3121 aagccggagt tcgttttctt tttaagtgga gtggatattt tggcaaccga ccgttacggc
     3181 aagctgaagg tttccattga aggatgtaag cggcgagacc aattggtttt cgaaatgtgc
     3241 aaacgccatc aaattccctg tgcggtggcc atgggcggcg gctacagccc cgatgtgcgc
     3301 accattgtgg aagcccactg ccatactttc agggtggcca aaagcctttt tgattagaag
     3361 ttttttttgc ggacgggtaa atcgagactc attcaaaggg tccgccatct ttccaggccc
     3421 acaaatgcat gcaggcatag gtgcggtagg gactccattt ggccgcaatt cgctgcaatt
     3481 tttgctgcaa tgcttttttc tccgtggtgc gcaggcggta caatttgatc atggcttgct
     3541 ggatacccag gtcatccacc gggaagacat cctccctgcc gaggctgaac atcagcagca
     3601 tttccaccgt ccagcggccc acccctttta tctcggtgag caggctgatc acctcctcat
     3661 tgctcctggc cagcagcttc ttatcggtaa tttggtgtgc cacgcagaag tcggccacat
     3721 tgtgcacgta ggtggctttg gcatggctga ggccaatgct tcgcaatgtt tcgtatggta
     3781 ttttcaggac ctcccgggcg gtagggttgg catgtgggaa taactcatgg aagcgtttcc
     3841 ggaaaacatc tgccaccttt gtactcagtt gctggctcat gatggcgtgc atcaggcgca
     3901 gcggaatatt gggatgcagg gtgagctcga aagcatcatc agacaaaatt tcggtcagtt
     3961 ttttgtcttt tttcagcact tgcaggtaag tcataaaaat taatgttcca caattatact
     4021 tcatcactca tatttgcgat catgaagcgt gaactacagg taaccgcaga tggctcacac
     4081 acatttcagt tgtcggaaag cgatatcact ttccacagtc ggtttggggc catccaggag
     4141 agtgagcatg tatacattgg agcgggatta caacctttta tcggcaaagc cgaacctatc
     4201 cgggtgtttg aaatgggatt tgggactgga ctgaacgcct ttctttccta tatggaagcc
     4261 cgggaagaaa aggtgaaggt tgaatatgat gcagtagaag cctttccttt ggagaaagaa
     4321 gaatacagtc aactgaacta cgcccatgtg ctgcgcaaac aaggatttgc cgatacctta
     4381 caaatgctgc accaggcacc ttggggtaaa accatcaagc tggggcagtt ttttacgctg
     4441 gtaaaacacc attccaaaat tgaggatttc cagtccaaca aaaagttcca tgttattttc
     4501 tacgacgcct ttgcaccaac tgcacaacct gagttgtgga ctgaggatgt tttttacaaa
     4561 ttatacgata tgctgctcga tggcggcatt ttgactacct actgcagcaa aggcgatgta
     4621 agacgtaccc tgcaaagcgt gggctttgat attgaaaaac tccctggccc ccgtggcaaa
     4681 agagaaatgg tgcgggcctt caaaccgttt gcggaatgaa aacaaggctg atccttttgg
     4741 ggtggatgtt aggaatgacg ctgaccagcc tggcgcaatc attttctgcc agcgatgaga
     4801 aaaacatccg cctggtattg agtgagcagc aggacgcctg gaataaaggg gatattggcg
     4861 ccttcatgac cggttactgg aaaagcgact cgcttacttt taccggtgcc aatggcatta
     4921 cttacggctg ggagaatacc tatcagaact atctcaagcg ctacgacagc cccgccaaaa
     4981 tgggacaact gaccttcacc atactggagg tattgcctat gggaaatgat tactgcaaag
     5041 tgatcgggaa atggttcctg aagcgcaaaa tgggcgatat tggcgggcat ttcaccctgg
     5101 ttttccggcg ttttggaaac gggtggaaga tcatttctga ccataccagc taattccctt
     5161 cttcgtcaag cccgaatttg ggcaccgatt tgatcttgtt gcggatgtac caaaccaggg
     5221 cgataaagct ggcaatcatg caggcataat acacatagtg ccaaacagtg atcttttcat
     5281 cgagaaagag aagccccaac ttgataccaa agaatgtatt gaggagcatc caaagaatcc
     5341 ccatgctgat gcattgaact attactgcca gaaatttccg tacctcaggt tccatagtct
     5401 gaattgtaag ctgtaacaac cggggtctaa agatagttgg attggccacg ggatagctgg
     5461 aaacaggctg aataccagct gctttttcta tggatagtta atctgtctgt ccaactgtca
     5521 ttttggcgca acaggcatta tctttgcgac ccgcaaatgg aaaagtgatg cacgaactac
     5581 cacaaacaga agccgaggta ctgcaagccc tgaagagcca cgacgaaagc cggcaaggtg
     5641 aatcctatgc cccttttgcg ctggatccca accagtaccg caagcatttt tatattgaga
     5701 gctatgactg ccagatgaat ttcagcgata gtgagatcgt ggcttccatc ctgaaccagc
     5761 atggttttgg ggccacccgc aactatgagg aagccgacct gatcctgctg aatacctgca
     5821 gtatccgcga aaaggccgaa caaaccgttc gcaaacgcct ctcagagttt agaaaactaa
     5881 aggaaggcaa acccggcatg ctggtgggtg tattgggctg catggccgaa cgcctgaaaa
     5941 ccaaattgct ggaagaagaa aaactggtgg acatggtggt gggccccgat gcctaccgca
     6001 ccctgcccgg cctgatagaa gaagcggaga ccggtcagaa ggcggtgaat gtgatcctga
     6061 gccgcgatga aacctatgcc gacatctcgc cggttcgcct cgacagcaac ggtgttacag
     6121 ctttcgtaag catcatgcgg ggctgcaaca acatgtgttc tttttgcgtg gtgcccttta
     6181 cccgtggccg cgaacgcagc cgcgatgatg tgagcatcgt ggccgagtgc caggatctgt
     6241 atgatcgcgg attcaaagaa gtgaccctgc tgggccagaa tgtggacagc tattacttcg
     6301 tacacgaaga cggccgcatt gtcaactttg ccaacctgct cgaaaaagtg gcattgatca
     6361 gccccgacct gcgtgttcgc ttcagcactt cgcatcctaa ggatattact gacgatgtgc
     6421 tgcataccat ggcccgctac gaaaacatct gcaaatacat ccacctgccg gtacaaagcg
     6481 gcagcacccg tgtgttgcaa ctgatgaacc gtacctacac ccgtgaatgg tacatggcca
     6541 aagtagaccg catccgcgaa atcatgcctg actgtggcat cagcagcgat gtgattgccg
     6601 gcttctgcac cgaaacagaa gaagaccacc aggataccct cagcatcatg gaatacagcc
     6661 gttatgacat gagctatatg ttcttctata gcgaacgccc cggcacgctg gccgcccgcc
     6721 gctacgccga tgatatacct gaagcaatca aaaagcgccg cttgcaggag attgtggagc
     6781 tacagaacag gctgagccgt gaaagcaacc agcaggatat tggcaaaaca tacaaagtgc
     6841 tgattgaagg cgacagcaag cgcagcgaca aagactggat gggccgcaat tcgcagaata
     6901 aagtcgtggt gtttccaaaa gaaaaccacg atctcaaaaa aggcgactat gtatgggtga
     6961 aggtgcacga tagcacacaa gccaccctgc tgggaaacat agtggaaacg caccaggcct
     7021 aacacacccc tttgacccta attcactaaa accatgacag accttcaatc gataaaaaac
     7081 cgtttcggca tcattggcaa ttcaccggcg ctcaaccatg cgttgaatgt agccgtacag
     7141 gtagccaata ccgacctgag cgtactgatc agcggcgaga gtggcgtagg caaagaagtg
     7201 ttcagccaga tcattcatgc cctgtcgccc cgtaagcaca atccgttcat agcggtaaac
     7261 tgtggcgcca tccctgaggg taccatcgac agcgaattgt ttggtcacga gaaaggcgcc
     7321 ttcaccggtg cagtagatgc ccgcaaagga tattttgaga ccgtgaatgg tggcaccatt
     7381 ttcctcgatg aaattggaga aatgccattg ggtacccagg cccgtttgct gcgggtactc
     7441 gagactggtg agttcatccg tgtgggctct tccaaagtgc aaaaaaccga tgtgcgggta
     7501 attgcggcca ccaataaaga tctgctcgaa gaatcgcaca aaggcaaatt cagaaaggat
     7561 ctttactacc gtctcaattc ggttcccatc cgcattccat cgctccgcga ccggcaggat
     7621 gacatcccgc tgctgttccg caagtttgtg attgattttg cggaacgcta caataccacg
     7681 ccggtgcaac tggacgatga agcccgccgc atgctgatga cctacccctg gcggggcaat
     7741 gttcgtgaat tgaaaaacat tgccgaacag atcagtgtgt tgtccaaatc gaaaatgata
     7801 accgcggcag aattgaaacc attcctgccc gatatgccgc tcaataattt gcccgtactc
     7861 gcctctgcta cgcatgctcc cgcaggtttt gtgagcgaaa ccacgtttgc tacagaaaga
     7921 gacatcctgt acaagttcat attcgatctg aaaaaagacg tgaccgacat gaagcggatg
     7981 ttcgtggaaa tagtgaacaa ccccaatgca gcgcaggtta ccggattgca ggaaattctg
     8041 aatgatcaca agcatgctgt tcatcccgat atccaggtgc catatgcagt gcctgccaag
     8101 cccataaccg caagtgctgc cggtgagccg gtttacattc cccacgcccc tactactgaa
     8161 caggctgccg aatttgacca ccacgaagag gtggaagatt cgctcaacat agccgacatg
     8221 gaaaaagacc tcatcatcaa ggcgctgaaa aaacaccgga gccgccgcaa ggatgccgcc
     8281 gccgatttgg gcatcagcga acgcactttg taccgcaagc tcaaagaata cgatattgaa
     8341 gaattgtaac cttcagcaat aaggaataag gaatttgaaa taaagaaata aggaagtatg
     8401 ggagagatgg ttatgagcag gatgagtctt tgggcactta ccgcaaaagg tttgggaagc
     8461 agaatgcgtt tttcccaact ggtggtttta ctgtctgcct tactgtttgt ttcctgcaag
     8521 gtgtacacct tcaaggatgt gagcatacca ccggaggtaa aaacggtgaa agtgaacttc
     8581 atcgaaaacc gggcacggta tgtgaacccg cagctgagcc cacgcctcac cgatcgtctg
     8641 cagcaaaaga tcgtcagtca aaccaggctc acccgcagca acaacgatga tgccgactgg
     8701 gtaatcagcg gatatgtaag cggctacgat gtcaccactt cgggtatcag cggttcgcag
     8761 gcatcgacca accgcctgaa cgtgaccgtg cagatcacac tcatggacaa cgtggcacaa
     8821 aagaagagcg aatacagcgt cgtaaaaatc ttcgacttcc cggcacaggc cacgcttcag
     8881 caagccgaac aagcattggg cgaagaactt atccgagggg tgtcggatga aattttcaac
     8941 cgcatttttt ccaactggta atcattttgc cgctacatta gtcgcatgca tgccaaggcg
     9001 caacatatcc tgcaatcatt acgccatcaa agcaatgatg ccgtttcgtt tgatgagctc
     9061 agcagccagt ttccctggta tgctacggcg tggttaggca agtgcctgca agagggtgtt
     9121 tcagcagaaa gcctggaaaa attggccctc accgttcatg agccgctgcg attacagacc
     9181 ctgctctccc ctgctgttta tccgcaggca ataatggaga aggctgctga accggaagtg
     9241 tccattggag aggaagaaga accagcaaca gaggaagtag tggcaactgc ttcaggggaa
     9301 gaaagtgcaa tgagccaggc agccgaaaat gccggcatgg tgcagacggc gctggaagca
     9361 gtggagacaa ttgcggagga aaagcctgcc ttgatggcaa gtcctgaggc cagcagcgat
     9421 tcggatgatg aattgttgtt ccagccttac cataacgttg actactttgc ctcgcagggc
     9481 atcaag
//
LOCUS       DATIQF010000295         2657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_232680,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000295 DATIQF010000000
VERSION     DATIQF010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2657
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232680"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(78..731)
                     /locus_tag="VLL95_04825"
     CDS             complement(78..731)
                     /locus_tag="VLL95_04825"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HSR38215.1"
                     /translation="MALEAVIFDMDGTLVDSMPYHYKSWEVFFEQQGIYLTKEEFDSI
                     HHGTLFDIMPRIFGDISHEESYRLGMIKEQAFRELYKHEIKPIDGLVEWLEALKKAGL
                     KIGLGTAADFTNADFTVDAIDIRKYFDVIVTSDIVKEGKPSPAVYLKVAEMLQVNPGG
                     CVVFEDTLSGIQAGLSAGMKVIGITTGLSKEEMQVLPVSAVIDHYQSLSLHDITSLF"
     gene            complement(734..1537)
                     /gene="argB"
                     /locus_tag="VLL95_04830"
     CDS             complement(734..1537)
                     /gene="argB"
                     /locus_tag="VLL95_04830"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: protein motif:HMM:NF012899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HSR38216.1"
                     /translation="MRQNLFVIKIGGNVIDDEQKLAAFLKDFASIEGLKILVHGGGKL
                     ATRVATALGIEQQMVEGRRITDAETLKVVTMVYAGYINKNIVAALQSYGCNAIGLSGA
                     DGNAVLAHKRGANSAVGKAGIDYGFAGDVDTVNASLLAQLLNQGYSVVLAPITHDAQG
                     QLLNTNADTIASTTAVALAQHFNVRLIYCFEKKGVLENVDDDHSVIPEINQANYQQLK
                     KDGKLFAGILPKIDNAFAAIDAGVKEVLIGHADDLVQNTGGTMAGTLIK"
     gene            complement(1546..2100)
                     /locus_tag="VLL95_04835"
     CDS             complement(1546..2100)
                     /locus_tag="VLL95_04835"
                     /inference="COORDINATES: protein motif:HMM:NF022018.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6N domain-containing protein"
                     /protein_id="HSR38217.1"
                     /translation="MQVIQSIQNRIYEIRGERVMLDFDLAALYDVETKVLNQSVKRNI
                     ERFPADFMFELTQTEWSEIRSQTVTDYPSRSQIVTLETGRGRHTKYLPHAFTEQGVAM
                     LSGVLRSAKAVQMNIAIMRAFVAVRKALLHQNDIKEQIKEIRERLGEHDVQLSQIYDA
                     LENLLDEKAAQRKWEDRERIGFKK"
     gene            complement(2127..>2657)
                     /locus_tag="VLL95_04840"
     CDS             complement(2127..>2657)
                     /locus_tag="VLL95_04840"
                     /inference="COORDINATES: protein motif:HMM:NF012412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38218.1"
                     /translation="LTDIVTMTEALAKQPQQVRRPKVVLTWAPHVKPLPQCVANSFAQ
                     WVNAWKGPDGSGVDFVITHPEDYELDEKFTSGATITHDQEAALKDADFVYVKNWSTYQ
                     DYGKIYCNDPEWMLTNEKLALTNNAKVMHCLPVRRNVELSDEILDGPNSLVTEEAGNR
                     VWAAQAVLAEILRNNP"
BASE COUNT          633 a          689 c          574 g          761 t
ORIGIN      
        1 gagaaagaag gcgtggctat caactgcttc agcagtgcta cagcttcatc aaataaaaag
       61 gagtagttca taaacgatca gaatagggag gtgatatcgt gaagggaaag ggattgataa
      121 tggtcgatta cggcagatac aggcagcacc tgcatctctt ctttggaaag gccggtcgta
      181 atgcctatta ctttcatacc ggcggacagt ccagcctgga tgccactcag cgtatcttca
      241 aagactacgc agccgccagg atttacctgt agcatctctg cgactttcaa atacacggca
      301 ggcgaaggct tgccttcttt tacaatatcg ctggttacaa tgacatcaaa gtatttgcga
      361 atgtcaatgg catctacggt gaagtcggca ttggtaaaat cagctgcagt accgagacct
      421 attttgagcc cggctttctt caatgcttcc agccattcaa ccaatccatc aatgggtttg
      481 atctcatgct tgtacaattc gcggaaggct tgctctttta tcatgcccag cctgtagctt
      541 tcttcatggc tgatgtcgcc aaaaatgcgg ggcatgatat cgaacaaagt gccatgatga
      601 atgctgtcaa actcttcttt ggtgaggtaa ataccctgct gctcaaagaa gacttcccac
      661 gacttgtaat gatagggcat gctgtctacc agcgtgccat ccatatcaaa tatgactgcc
      721 tccagtgcca ttgctattta attaaagttc ctgccattgt accgccggta ttctgaacca
      781 ggtcatctgc atgaccgatc aatacttcct tcacaccggc gtctatggca gcaaatgcat
      841 tgtctatttt ggggagtatc cccgcaaaca actttccatc ctttttcaac tgctggtagt
      901 tggcttgatt gatttcgggg atcactgaat gatcgtcatc cacgttttca agcacgcctt
      961 tcttttcaaa acaatagatg aggcgcacgt tgaaatgctg agccaatgca accgcggtag
     1021 tactggcgat ggtatcggca ttcgtgttga gcaactgtcc ttgtgcgtca tgcgtaatag
     1081 gcgccagcac cacactgtat ccctggttca ataattgggc aagcaatgat gcattcacgg
     1141 tatccacatc gccggcaaac ccatagtcaa taccagcttt acccactgca gaattggcgc
     1201 cacgtttgtg cgccagcacc gcattgccat ctgcaccgct caaaccaatc gcattgcaac
     1261 cataggattg cagtgcggcc actatgttct tattaatgta cccggcataa accatggtca
     1321 ccaccttcag cgtctccgca tctgtgatgc gacgtccttc caccatttgc tgctctatgc
     1381 ctaatgccgt ggccacacga gtagccagtt tgccgccacc atgcactaat attttcagtc
     1441 cttcaatcga tgcaaagtct ttaaggaaag cagccagttt ctgctcatcg tcaatgacgt
     1501 tgccaccaat ttttatgaca aatagattct gtctcatttt atccgtcatt tcttgaatcc
     1561 aattctttca cgatcctccc acttgcgttg agcagctttt tcatccagga gattttctaa
     1621 cgcatcgtat atctggctca gttgcacgtc atgttccccc aatcgctctc ttatctcttt
     1681 gatctgttcc ttgatgtcat tttgatgcaa caaagctttt cgcactgcga caaatgcccg
     1741 catgatggcg atgttcattt gcactgcctt tgctgatctc agcacaccac tgagcatagc
     1801 gacaccctgc tctgtgaagg catggggcag gtacttggtg tggcgccccc taccagtttc
     1861 taaggtcaca atttgtgacc ttgaagggta atctgttaca gtttgagacc ttatttccga
     1921 ccattcagtc tgcgtcagtt caaacataaa atccgctgga aaacgctcaa tgttgcgctt
     1981 tacagactga tttaagactt tggtttccac atcataaagt gctgccaggt caaaatcgag
     2041 catcacccgt tcgccacgga tttcataaat gcggttctgg atggattgga tgacttgcat
     2101 agtgtgtgat ttttactgtc agaattttac ggattattcc gcaatatttc tgccagcact
     2161 gcctgcgccg cccataccct gttgccggct tcttctgtca ccaggctgtt gggaccatcc
     2221 agtatttcat cgctgagttc cacattgcga cgcaccggta aacagtgcat tactttggca
     2281 ttgtttgtca gcgccagttt ttcattggtc agcatccact ccggatcatt gcaatagatc
     2341 ttcccgtagt cctggtaagt actccaattc tttacgtaca caaagtctgc atccttcaat
     2401 gcagcttcct ggtcgtgggt aatggtagca ccgctggtaa acttctcatc taattcgtaa
     2461 tcttccggat gcgtgatcac gaagtcaaca ccactaccat cggggccttt ccatgcattt
     2521 acccattgtg caaagctgtt ggctacgcac tgcggcaaag gcttgacatg tggcgcccac
     2581 gtgagcacaa cttttggccg ccgaacctgt tggggttgtt ttgccaatgc ttcggtcatg
     2641 gttacaatat cggtgag
//
LOCUS       DATIQF010000296         1688 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_263153,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000296 DATIQF010000000
VERSION     DATIQF010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1688
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263153"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..376)
                     /locus_tag="VLL95_04845"
     CDS             complement(<1..376)
                     /locus_tag="VLL95_04845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38219.1"
                     /translation="MKSSLHVALGVAAGLSVLLITQREKTILVPEQPEIQPVEQLVQH
                     SEKSATAVPFKVLLAPAEQGDVLTGMPVQEEFDMFAPTVGVTKTAALVTDGGTTGATP
                     GDVIEYTVVVSNTGSNNGTSVTF"
     gene            729..1343
                     /locus_tag="VLL95_04850"
     CDS             729..1343
                     /locus_tag="VLL95_04850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38220.1"
                     /translation="MKRRPFLRKAGFGIASIPLAMKPGAWKTSSENSWKAALQALSVQ
                     CKIKTVPSFMCFQFMPAVPNEVKSGEFKKADDNYYFYNEEQCCFRVFEKTHHSLGVIA
                     LLIPFWAKQADGSWKKVACLSQYELQALASACKAQPQLEGNDLLPVYSERQRVPYVYH
                     TRNGRVDLQSKVDDTNAIACQIQVVSNEEVLVRSSLSMSASGMA"
     gene            1390..>1688
                     /locus_tag="VLL95_04855"
     CDS             1390..>1688
                     /locus_tag="VLL95_04855"
                     /inference="COORDINATES: protein motif:HMM:NF019126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HSR38221.1"
                     /translation="MAEPFLSEIRLMSFTFPPKGWALCNGQLLPINQNQGLFSLLGTT
                     FGGDGRVNFALPDLRGRVPIGVGNGHTLGERAGSEAVTITATTMPQHTHLFASNN"
BASE COUNT          467 a          373 c          384 g          464 t
ORIGIN      
        1 tgaatgttac gctggttcca ttgttactgc cggtattgct taccaccact gtatattcaa
       61 ttacatctcc aggtgtggca ccagtggtac ctccgtcggt aacaagcgct gctgttttgg
      121 taactccaac tgttggcgca aacatgtcaa actcttcctg cacaggcatt ccagtaagga
      181 cgtcgccctg ctctgcaggt gccaatagaa ctttgaatgg aaccgctgtt gcgctttttt
      241 cagagtgctg caccaattgc tccactggtt gtatttcggg ctgttcgggc accaaaatcg
      301 ttttctcacg ctgtgtgatc aataaaacgg aaagcccggc agcaacgccg agtgccacgt
      361 gtaaggaaga tttcatgatt gtgctgattg gcttctaaaa tgggtctgga aatttaatgg
      421 gcaaaagact gattattatt tgcttgcatc aacatcaaga aagttgaaca tcctcgaccg
      481 gaatcacgta agcagtcctt taaaatggct cgaaagatat tggattgcag aagtaatcaa
      541 aattattttt tgaaaaacaa ttccacatga ggtctgaaaa cttttatctg gaattaattc
      601 ttagcaattc atgatttgtc ctaatttcct cgcctgtatc caatctgttc aaatcacaca
      661 tggagagttt gcatgttttt tttgaggtgt agttttgaat gcagaggctc atctcacaat
      721 agtcaattat gaaacgcaga ccatttctca ggaaggcagg ttttggaata gcctccattc
      781 cattggcaat gaaacccggt gcatggaaga cgtcgtcgga aaacagttgg aaagccgcat
      841 tgcaagcgct ttctgtgcaa tgcaagatca agacagttcc ttccttcatg tgttttcagt
      901 ttatgcccgc agtgccgaat gaagtaaagt ctggtgagtt caaaaaggct gatgacaatt
      961 actatttcta caatgaagag caatgctgtt tccgggtgtt tgaaaaaacc caccactctt
     1021 taggtgtaat tgccttgctg ataccattct gggccaaaca ggcagatggc agttggaaaa
     1081 aagtggcatg tttgtcgcaa tatgaactgc aggcattagc atccgcttgc aaagcacaac
     1141 ctcaacttga aggtaatgat ctgcttccag tgtacagcga gcggcaacga gttccttatg
     1201 tttatcatac ccggaatgga agggttgact tgcaatcgaa agtagatgac acgaatgcaa
     1261 tagcctgcca aattcaagtg gtatccaatg aagaagtgct ggtaagatcc agcctctcta
     1321 tgtcagcatc aggaatggct tgaatcgcct cctgtaatta attcgttcaa agaagaaaaa
     1381 catatcagca tggcagaacc cttcttgtca gagatcaggc tcatgagttt cacttttccg
     1441 ccaaaaggct gggccttgtg taatggtcaa ctattaccca tcaaccagaa ccagggatta
     1501 ttctccctac tcggcaccac attcggcggc gatggtaggg tcaattttgc ccttcctgat
     1561 ctcagaggca gggttcccat tggggtaggc aatggacaca cactggggga aagagctggc
     1621 agtgaagcgg taaccattac agctaccact atgccacagc acacgcattt gtttgcatcg
     1681 aacaatag
//
LOCUS       DATIQF010000297         1953 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_263174,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000297 DATIQF010000000
VERSION     DATIQF010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1953
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263174"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..614)
                     /locus_tag="VLL95_04860"
     CDS             complement(<1..614)
                     /locus_tag="VLL95_04860"
                     /inference="COORDINATES: protein motif:HMM:NF013071.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HSR38222.1"
                     /translation="MAAVNIMWFRRDLRLSDNTALYHALLAGKPVVPVFIFDRNILDK
                     LEDRSDRRVEFIHAALQEMQQQLLALGSTMHVYYGFPEQAWPLILSTYEVAGVYTNHD
                     YEPYALERDASVQQILSAKGVGFHTYKDQVIFEKDEVLKDDGKPYTVFTPYSRKWKAK
                     LTPVHLESYPTEKHFDHFYKQAPVAIPGLEQMGFSSVDKPFPAR"
     gene            complement(663..1502)
                     /locus_tag="VLL95_04865"
     CDS             complement(663..1502)
                     /locus_tag="VLL95_04865"
                     /inference="COORDINATES: protein motif:HMM:NF013247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HSR38223.1"
                     /translation="MLVYLNGRFINEAKATVSVNNRSFRYGDGCFETIKVIRGEAPLL
                     PLHFDRLFSALELQQFQLPSFFTPEYVASRLHELVQKNGHAPLARVRVTVFRGDGGIY
                     DAINHQPHLLIQSWPLNPENNRLNENGLVIDFFRDGKKSCDAFANLKSNNYLLYAMAA
                     LHARQQHCNDALILNQYGHVADATIANVWIAEGNNLVTPPLTEGPVQGTMRRYLLEQA
                     TGKGFQVKEEPISTDRLLAADEVFLTNAIYGLKWVRQVADREFRCQLAASVHHTLVAP
                     LWQ"
     gene            complement(1504..>1953)
                     /locus_tag="VLL95_04870"
     CDS             complement(1504..>1953)
                     /locus_tag="VLL95_04870"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF013323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-transferase"
                     /protein_id="HSR38224.1"
                     /translation="GKQTITTVPGSAFFDSAMSFGMIRAGKVDLTVLGAMEVADNGDI
                     ANWKIPGKMVKGMGGAMDLVASAKNIIVAMQHVNKAGESKLLSQCTLPITGVRCVKKV
                     VTELGVFDITDRGFELRELAPGVTVEEVKEKTAGRLVVEGEIPVMEV"
BASE COUNT          471 a          539 c          444 g          499 t
ORIGIN      
        1 attctggcag gaaaaggctt gtcgacggaa gaaaagccca tttgctccaa accgggaatt
       61 gccacaggtg cctgcttata aaagtggtca aaatgttttt cagttgggta tgactccaaa
      121 tgaaccggcg tgagctttgc cttccatttg cgactgtagg gcgtgaaaac tgtataaggc
      181 ttcccgtcat ctttcagcac ctcgtctttt tcgaaaatga cctggtcttt gtaagtatga
      241 aatccaaccc cttttgccga cagtatctgc tgaacggatg cgtctcgttc caaagcataa
      301 ggttcgtagt catgattagt gtaaacacct gccacctcgt aagtcgataa gatcaggggc
      361 catgcctgct ccggaaaacc ataatacaca tgcatggtgc tgcccagtgc cagcagttgc
      421 tgttgcattt cctgcagtgc tgcatggatg aattcaaccc gacggtctga cctgtcctcc
      481 agtttgtcaa gaatattcct gtcgaaaata aaaacaggca ctaccggctt gccggcaagt
      541 aatgcatgat acagagccgt gttatccgac aaccgcaaat cgcggcgaaa ccacattatg
      601 tttactgcag ccatgaactg atcaatagaa ttggaagtgt aacaactgca gccaggattg
      661 gtttattgcc acaagggagc aaccaatgtg tgatgaacag acgctgccag ctggcaccgg
      721 aattcgcggt ccgccacctg cctcacccac ttcaaaccat aaatggcatt ggtcaaaaac
      781 acttcatccg ccgctaatag cctatctgtg gagataggct cctccttcac ctggaatcct
      841 tttcccgtgg cctgttccag caggtaccgg cgcatcgttc cttgcaccgg gccttccgta
      901 agtggcggtg taaccaggtt gtttccttct gcaatccaaa cattggcgat ggtagcgtct
      961 gccacgtgtc catattggtt caggatcaaa gcatcgttgc agtgctgctg cctggcatgc
     1021 agcgccgcca tggcatacag caaataatta ttgctcttca ggttggcaaa agcatcgcag
     1081 gatttttttc catcccggaa gaaatcaatt accaggccgt tttcattcaa ccggttgttt
     1141 tcgggattca agggccagga ctggatcagc aaatgcggct gatggttgat ggcgtcgtag
     1201 atgccaccat cccctctgaa tactgtgacc cgtacccgcg ccaatggggc atggccattt
     1261 ttctgcacca gttcatgcaa acgcgacgcc acatattcag gggtaaaaaa cgagggcaac
     1321 tggaattgct gcaattccag tgcactgaac aatcgatcga aatgcaaagg caacaaaggc
     1381 gcttcgcctc ttatcacttt gatggtctca aagcatccat caccgtaacg aaaagagcgg
     1441 ttattgacag agacggtcgc tttcgcctca ttgatgaatc gtccattcag gtacaccagc
     1501 atgttacacc tccatcacag gtatctcccc ttccaccacc aatctgcctg cggttttttc
     1561 ttttacttct tccactgtta cgcccggcgc caattcccgt agctcaaagc cacggtcagt
     1621 gatgtcaaaa acgcccagtt ctgttactac ttttttcacg catcgaaccc ctgttatggg
     1681 caatgtgcac tggctcaaca gtttgctttc gccggccttg ttcacatgct gcatggccac
     1741 tataatgttt ttagcgctgg ccaccaggtc catggcgcca cccatcccct tcaccatctt
     1801 gccggggatt ttccagttgg caatgtcgcc gttatcggcc acttccatgg cacccaacac
     1861 cgtcagatcc actttgcctg cacggatcat cccaaagctc atggcactgt cgaaaaaagc
     1921 ggagccgggt accgttgtaa tcgtttgttt ccc
//
LOCUS       DATIQF010000298         5124 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_156779,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000298 DATIQF010000000
VERSION     DATIQF010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5124
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156779"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1267)
                     /locus_tag="VLL95_04875"
     CDS             complement(<1..1267)
                     /locus_tag="VLL95_04875"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38225.1"
                     /translation="MSKKWLAMLGLLAITQVQAQSKKSAPAPVANPQEIPFFKNLEYR
                     LIGPYRGGRAAAVAGSYKNKNTFYFGATGGGVWKTTDGGSNWSNISDKYFGGTIGSVA
                     VAPSDESIIYVGEGENTVRGNVSEGLGGMWKSDDGGKTWQNLGLKEGRHIIRIVIHPR
                     NPDIVWVAVLGHLFGPHQDRGVFKTTDGGKTWRKVLYVNDQAGASDLVMEPGNPKVLY
                     AGTWRIQRLPHSLESGGEGSGLWKSTDGGETWKNISGNKGLPKGTWGIVGVAVAPSNT
                     EKVYAIIENEKGGMYASEDGGQTWALRSSDNNIRQRAWYYTKVFVDPQNENLVYAPNV
                     NFMISRDGGRNWSSPFRTPHGDHHDLWIDPENGKRMIVADDGGAQVCFDGGVNWSTYM
                     NQPTVQVYRVSTDNAFPYHILGGQQDNGAF"
     gene            1428..1988
                     /locus_tag="VLL95_04880"
     CDS             1428..1988
                     /locus_tag="VLL95_04880"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HSR38226.1"
                     /translation="MSELKPWHQVSSRYIHREKWFNLRADKVLKGNGEEMDPYYVLEY
                     SDWVNIFPVTKDGRVVLVKQYRYSLGCFSMEVPGGIMDPHETDPLEAAKRELLEETGY
                     SAGKVEEVAVVATNPATQNNRLHCYLATDCELTHELDHDENEELEVVLVSMEELLEML
                     RNNQIIQSLHVASMFYALQKLGRIVF"
     gene            complement(2302..2679)
                     /locus_tag="VLL95_04885"
     CDS             complement(2302..2679)
                     /locus_tag="VLL95_04885"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HSR38227.1"
                     /translation="MSLSAVDMVKAAKAAIQNLTPQQVHEELQSGEVTLIDIREPGEL
                     EQNGKIAGSTNAPRGMLEFYADETLPYHKPEFDRNKRIILHCASGGRSALATQTLMQM
                     GYSNIAHMDGGINAWKEAGLPVE"
     gene            complement(2783..4141)
                     /locus_tag="VLL95_04890"
     CDS             complement(2783..4141)
                     /locus_tag="VLL95_04890"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008841 - dihydrofolate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="folylpolyglutamate synthase/dihydrofolate
                     synthase family protein"
                     /protein_id="HSR38228.1"
                     /translation="MMNQSGFCHNLQPISSMNYADTIQYLYARLPMFTRIGAAAYKKD
                     LHNTLALLEALGHPQRQFKSIHIAGTNGKGSTSHMLAAIMQQHGYKTGLYTSPHLVDF
                     RERIKINGEWVSEKFVVAFTESIQPLIESIEPSFFEVTVAMAFAWFAQQEVDIAIIET
                     GLGGRLDSTNVITPELSIITNIGWDHMNILGDTLEKIAFEKAGIIKHAVPVVIGETTP
                     ETQPVLLAKATEAHSPVHWAEQQYKVVAAQPNAFDLAVTLQQSSTGAQQHWHTDLGGL
                     YQQYNLRTVITAADVLTSMGWPLQPNKIQEALLQVKKLTGLHGRWERIHTKPDVVLDV
                     AHNEHGMRQVVQQIAQLQQMRHDMQVHCLIGMVKDKDISKVLQLLPADWKFYFTQAQL
                     PRALPADELQTMATPYHLTGQHFANVNLALQHARQQAHQNDLILICGSVFVVGEVNRQ
                     DL"
     gene            complement(4143..4400)
                     /locus_tag="VLL95_04895"
     CDS             complement(4143..4400)
                     /locus_tag="VLL95_04895"
                     /inference="COORDINATES: protein motif:HMM:NF016876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_process: GO:0030541 - plasmid partitioning [Evidence
                     IEA];
                     GO_process: GO:0051290 - protein heterotetramerization
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HSR38229.1"
                     /translation="MAGYKVLLTRNAEKQLDKIDASQLGPIVIALKQLETDPRPNGYK
                     KLKGRNGYRVRAGNYRIIYEIFDAVLIIEVIAIGHRKDIYR"
     gene            complement(4403..4600)
                     /locus_tag="VLL95_04900"
     CDS             complement(4403..4600)
                     /locus_tag="VLL95_04900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38230.1"
                     /translation="MVQLHPKFTTNEKGEQQVILALEEYQAILEALDELEDIRLYDAA
                     RLEDDGVRISLDEYLQKRNIQ"
     gene            complement(4670..5041)
                     /locus_tag="VLL95_04905"
     CDS             complement(4670..5041)
                     /locus_tag="VLL95_04905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38231.1"
                     /translation="MHQWFERNTTYSDELLDKNGLSSIILLRLHKTKMEADTLEVFSW
                     AEPVLIAEAKRLCKEFNDAGIIVNVPDKTIIPLVFIYNGTNGHFDPTALKSWSKQAGE
                     TQEDLITTLKPIIVTIHQPRN"
BASE COUNT         1157 a         1242 c         1328 g         1397 t
ORIGIN      
        1 ggaaggcgcc attgtcctgc tggccaccaa ggatatgata ggggaaagca ttgtcggtgc
       61 ttacgcggta cacctgaacg gtgggctggt tcatgtaagt actccagttt acgccgccat
      121 caaaacatac ctgggcgccg ccatcatcgg cgactatcat gcgcttgcca ttttccgggt
      181 cgatccagag atcgtggtgg tcgccatgcg gcgtacggaa ggggctgctc cagttgcggc
      241 cgccatcgcg gctgatcatg aagtttacgt tgggcgcata taccaggttt tcattctgag
      301 gatccacaaa tactttggta tagtaccagg cccgctggcg aatgttgttg tcgctgctgc
      361 gcaatgccca ggtttgaccg ccatcttcgc tggcatacat accgcctttt tcattttcaa
      421 taatggcata cactttttcg gtattgctgg gagccacggc tacgcccaca atgccccagg
      481 tgcctttggg caatccctta ttgccagaaa tattcttcca tgtttcgccg ccatcagtgc
      541 tcttccagag gccgctgcct tcgccgccgc tttccaggct gtgtggcagg cgctggatgc
      601 gccaggtgcc ggcatacaat actttggggt tgcccggttc cattacgagg tcgctggcgc
      661 cggcctggtc gtttacatac aatacctttc tccaggtttt gccgccatcg gtggttttaa
      721 aaacaccgcg gtcctggtga ggtccaaaca ggtggcccaa aaccgccacc caaacgatat
      781 cgggattacg cggatggata acaatgcgaa tgatgtgacg accttccttg agccccaggt
      841 tttgccaggt tttaccacca tcatcgctct tccacatgcc acccaggcct tcgcttacgt
      901 tgccgcgaac cgtgttttcg ccttcaccca cataaataat gctttcatcg ctgggagcta
      961 cggctaccga accgatggtg ccgccaaaat acttgtcgct gatgttgctc cagttgctac
     1021 cgccatcggt ggttttccaa acgccgccac cggtagcacc gaaatagaag gtgttcttgt
     1081 ttttataact accagccacc gctgcagccc ggccaccgcg ataggggcct atcagccggt
     1141 attccaggtt tttgaagaaa gggatctcct ggggattggc aactggtgcc ggagcagatt
     1201 ttttagattg tgcctgcacc tgcgtaatag cgagcaggcc aagcatggca agccattttt
     1261 tactcataag tcttgtgttt taggtagttc cgaggtggaa atatactgag ccttagacga
     1321 tgaacccaat tggcaccttt tggtgggacc aaagaagttt gcaggtcgct gcaaaaacct
     1381 attctgcctg agggctacct tcgccatcct tcaagcaata tttaagcatg agtgaattga
     1441 aaccctggca ccaggtcagc agccgctata tccaccgcga aaaatggttc aaccttcggg
     1501 cagacaaagt gctcaaaggc aacggggaag aaatggatcc ctattatgta ctggagtaca
     1561 gcgattgggt aaacatattc ccggttacca aagacggcag ggtggtattg gtgaagcagt
     1621 atcgttattc gctggggtgc ttcagcatgg aagtgccggg cggcataatg gacccgcatg
     1681 aaacggaccc gctggaagcc gctaaaagag agttgctgga agaaaccggg tattcagccg
     1741 ggaaggtgga agaagtggcg gtagtggcca ccaatcccgc cacgcaaaac aacaggctcc
     1801 attgttacct ggccaccgat tgtgaactca cccacgaact ggatcatgat gaaaacgaag
     1861 aactggaagt ggtgctggtg agtatggaag agctgctgga gatgttgcgc aacaaccaaa
     1921 tcatacaatc gctgcatgtg gccagcatgt tttatgcctt gcaaaaattg ggcaggattg
     1981 ttttctgatc cttttaggaa acactgttca ttccgttttc aacttcatta tgtaatcgct
     2041 actggtacca ttccaatagc aaaaaataca tcgtccgttg tcgaattgat ggcgacagtt
     2101 tgcatgccca tacagccagt gcgcacaatc cgggcacagg gcctgcatga ccgatgaatc
     2161 actaaaatat tcgctctggc attcggcaca aatggcagtt ttacgttcgc tgcttttttc
     2221 attcatggca attgggcata ggtttctcga aggtgctcaa aacaccttta ttaaaatcat
     2281 ctcaccacgg tgaccttgaa attattccac cggcagtcct gcttctttcc atgcattgat
     2341 accaccatcc atgtgggcaa tattgctgta gcccatctgc atcagcgttt gggtagccag
     2401 ggccgaacgg ccaccggagg cacaatgcag gatgatgcgt ttgttccggt cgaattcagg
     2461 tttgtggtag ggcagtgttt cgtcggcata aaactcgagc atgccacggg gtgcgttggt
     2521 cgagccggct attttgccgt tttgttccaa ttcgccaggt tcgcggatat caataagcgt
     2581 tacttcaccg gattgcagtt cttcgtgcac ttgctgcggg gtaagatttt gtatggcggc
     2641 cttggcggcc ttaaccatat caacggctga taatgacata aatggtagat tgatttgaat
     2701 gaaaatcggg cttcaccagt aatgtacaac gtaaaaagtg gggatgcaag aagtccggcg
     2761 aggttctggc tgaagagtcc ctttacaaat cctggcgatt gacctcgcct accacaaaca
     2821 cactgccaca aatcagtata aggtcattct ggtgggcctg ttgcctggca tgctgcaggg
     2881 ccaggttcac attggcaaaa tgctgtccgg tcaaatgata gggcgtagcc atggtttgca
     2941 gttcatctgc cggcagggcc cttggcagtt gggcctgtgt gaaatagaat ttccaatcgg
     3001 caggaagcag ttgcagcacc ttgctgatgt ctttgtcttt taccatgccg ataaggcagt
     3061 gcacctgcat atcgtggcgc atttgctgca gttgtgctat ttgctgcacc acctgtcgca
     3121 tgccgtgttc gttgtgggct acatccaaaa ccacatcggg ctttgtgtgt atgcgctccc
     3181 agcggccatg caggccggtc agttttttta cctgtaggag ggcttcctgt attttgttgg
     3241 gttgcaaggg ccagcccatg cttgtcaata catcggcagc ggtgataacg gtgcgcaggt
     3301 tgtattgctg gtacaagcct cccaggtcgg tatgccagtg ctgttgtgcg ccggtgctgc
     3361 tttgctgtaa ggtcactgcc aggtcgaatg cattgggttg ggcggccacg accttgtatt
     3421 gctgttcggc ccaatgcacg gggctgtggg cttcggtggc ttttgccagt aataccggtt
     3481 gggtttcagg cgttgtttca cctatcacca ccggaactgc atgcttgatg atcccggctt
     3541 tttcaaacgc tatcttttcc agcgtatcgc ccagtatatt catgtggtcc caaccgatgt
     3601 tggtaatgat gctgagttcg ggggtgataa cattggtgct gtcgagccgg cctccgagtc
     3661 ctgtttcgat gatggcgata tcgacctctt gctgtgcaaa ccaggcaaag gccatggcca
     3721 ccgtcacctc aaaaaaactg ggctcaatgc tttcgatgag cggttgaatg ctttcggtaa
     3781 atgccaccac gaatttctcg cttacccact ccccattgat cttgattctt tccctgaaat
     3841 cgacgaggtg tggcgaggta tagaggccgg ttttgtaccc gtgttgctgc ataatggcag
     3901 ccagcatgtg gctggtgctg cccttgccat tggtgccggc tatgtgaatg cttttgaact
     3961 gccgttgcgg atggcccaat gcttcgagca aggcgagggt attgtgcaaa tcctttttgt
     4021 aggccgccgc gccaatgcgg gtaaacatgg gcaggcgggc atatagatat tggatggtgt
     4081 cggcgtagtt catcgaagaa atgggctgca aattgtggca aaaaccactt tggttcatca
     4141 ttttacctgt aaatgtcttt gcggtgcccg attgcaatta cttcgatgat gagaacagca
     4201 tcgaaaattt catagatgat acgataattg ccggcacgca cccggtatcc gtttcttcct
     4261 tttaattttt tgtagccatt gggacgtgga tcggtttcca actgtttaag tgcgattaca
     4321 attggcccaa gttggctggc gtcaatcttg tccaattgtt tttcggcatt cctggtaagc
     4381 aacactttgt agccggccat ctctattgaa tattcctttt ttgcaggtat tcatccaatg
     4441 aaattcggac accgtcatct tccaaacgtg ctgcatcata caggcggata tcttccagtt
     4501 catccagcgc ctccaaaatg gcctggtatt cttccaaagc aaggattact tgttgttctc
     4561 ctttttcatt ggtagtgaat ttgggatgca gttggaccat agcctgtgtt tgggattaaa
     4621 ggtcagaaaa ttataccggt tttcatgcag tgcatcagaa ttggagcagc taattccgtg
     4681 gttggtgtat ggtcacgatt attggtttca gcgtggtgat caaatcttct tgtgtttcac
     4741 cggcttgctt gctccaactt ttcaaagcgg tagggtcaaa atggccattt gtgccattgt
     4801 aaataaacac cagtgggatt atggtcttat cgggcacgtt tacaataata ccggcatcat
     4861 taaattcctt gcaaaggcgc ttagcctcag ctatcaaaac aggttcggcc caactaaaaa
     4921 cctcgagagt gtcggcctcc attttggttt tatgcaagcg aagtaaaatg attgaactca
     4981 ggccattttt atccagtaat tcatcactgt aagttgtgtt cctttcgaac cattgatgca
     5041 atgcttttgc cgaaagagtg accttgcttt ttgattgggc aaatcaaaat gaggttgtaa
     5101 ggagtataga ggcagttagt aaga
//
LOCUS       DATIQF010000299         1717 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_20013, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000299 DATIQF010000000
VERSION     DATIQF010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1717
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20013"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(177..1049)
                     /gene="cysM"
                     /locus_tag="VLL95_04910"
     CDS             complement(177..1049)
                     /gene="cysM"
                     /locus_tag="VLL95_04910"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF008735.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004124 - cysteine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase CysM"
                     /protein_id="HSR38232.1"
                     /translation="MATILDLVGNTPLVEIQHLNPNPQVKIYAKLEGNNPGGSVKDRP
                     ALNMIRSAVERGDIKPGMKLIEATSGNTGIALAMIARLYGLEIELIMPASSTRERTLT
                     MEAFGAKVILLEDIEKCRDYAEEKGATDEYFILNQFANPDNYLAHYKTTGPEIMRDTD
                     GSITHFVSSMGTTGTIMGTSMFLKELNPDIQIVGCQPTEESSIPGIRRWPAAYLPKIF
                     DPSRVDRVIDVSQQDATIMARRLAKEEAIFAGMSSGGAAWAALKLAAELESGVIVFIA
                     CDRGDRYLSSDLFG"
     gene            complement(1052..>1717)
                     /gene="epsC"
                     /locus_tag="VLL95_04915"
     CDS             complement(1052..>1717)
                     /gene="epsC"
                     /locus_tag="VLL95_04915"
                     /inference="COORDINATES: protein motif:HMM:NF041874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase EpsC"
                     /protein_id="HSR38233.1"
                     /translation="SLQKDLLEILNATKACRARNNQQLAQSFFDELPAIYELLKTDIH
                     ALLEGDPAAKSEFEIIRAYPGFLAICFYRLAHALHRLEVPLIPRILTEYAHAHTGIDI
                     HPGAVIGEYFFIDHGTGIVVGETTHIGNHVKLYQGVTLGALSVEKSMANTKRHPTVED
                     HVVIYSGATILGGDTVIGHHSVIGGNVWLTKTVPPHSTVYHKPEITVVTNPDFMLQDT
                     PLK"
BASE COUNT          389 a          411 c          466 g          451 t
ORIGIN      
        1 tgcgcattcg tttccatcga aaaaaagcat aaaaggatgc cgatgatagg aagtagtttc
       61 acggtaagtg gcattgtcag ttaaacttcc agcatacttc aggcactcct ggtcctggaa
      121 ggagggcaaa tcctgatcag aggagcacca cttcggattg gaatgttgct acaaagttag
      181 ccaaacaagt cgctgctcag gtacctgtcg cccctgtcgc aggcaataaa tactatgacg
      241 ccactctcta attcagcagc aagtttcaag gcggcccagg ctgcaccgcc actgctcatg
      301 ccggcaaaaa tggcttcttc tttggccagt cgcctggcca ttatggtagc atcctgttgg
      361 ctcacatcaa tgacgcggtc aacccgtgaa gggtcgaata ttttgggcag gtaggctgcg
      421 ggccagcgac gaataccggg aatggaagat tcttctgtcg gctggcaccc aacaatctgt
      481 atgtcgggat tcaattcctt caggaacatt gaggtgccca taatggtacc ggtggtgccc
      541 atgctgctca caaaatgagt gatgctgcca tcagtgtcac gcatgatttc aggcccggtt
      601 gttttgtagt gggcaaggta gttgtcgggg ttggcaaact ggttcaggat gaagtattca
      661 tcagtagctc ctttttcctc ggcatagtcg cggcattttt cgatgtcctc cagcagtatc
      721 actttggcgc caaatgcttc catggtaagg gttcgctcac gggtactgct ggcgggcatg
      781 atgagttcaa tttccagccc gtacagccgg gcgatcatgg cgagtgcaat gcccgtgttg
      841 ccgctggtgg cttcaatcag tttcatgccg ggtttgatgt cgccgcgttc cacagcgctg
      901 cggatcatat tgagggccgg cctgtctttc acgctgccac cggggttgtt gccttccagt
      961 ttggcgtaga tttttacctg cggattggga ttgagatgct ggatttcaac cagtggggta
     1021 tttccaacca ggtcaagaat agttgccata attatttcag gggtgtgtct tgtaacatga
     1081 aatcaggatt cgtcaccacc gttatttccg gtttgtggta tacagtgctg tgcggaggta
     1141 cagttttggt aagccaaacg ttaccaccaa tcacactgtg gtggccgatg acagtgtcac
     1201 ctcccaggat ggttgcgcct gaatagatga ctacatggtc ttccactgtc ggatggcgtt
     1261 tggtgttggc cattgatttt tcaacactca aagcgcccag cgttacgccc tggtacaatt
     1321 tcacatggtt gccaatatgc gtggtttctc ccaccacaat gccggtgcca tggtctatga
     1381 aaaaatattc gccaataact gcgccgggat ggatatcgat gccggtgtgt gcatgagcat
     1441 attcagtaag gatgcgagga atgagtggca cttccaaacg atgcaaggca tgcgccagtc
     1501 gatagaaaca gatggcgagg aaaccggggt aggcacgaat gatctcgaat tcacttttgg
     1561 ccgccggatc gccttccaac agggcgtgaa tgtcggtttt cagcagttca taaatcgcag
     1621 gcaactcatc gaagaaggac tgtgccaact gctggttgtt cctggccctg catgctttgg
     1681 tagcgttgag tatttccagc aaatcttttt gcaaaga
//
LOCUS       DATIQF010000300         3667 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_80692, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000300 DATIQF010000000
VERSION     DATIQF010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3667
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80692"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..477
                     /locus_tag="VLL95_04920"
     CDS             <1..477
                     /locus_tag="VLL95_04920"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006486 - protein glycosylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 61 protein"
                     /protein_id="HSR38234.1"
                     /translation="VRLKKQPLFEKEYQQAVQQLIASIAATNNENAFDKVFIYRKGLR
                     SLENNHAVLECLAQLGFYCFDPGDHPVSFQVAALAKASVVVGVHGAGLTNILFSSKLR
                     FLLELMPGNMKPNHYREIAVTKGASYACLQGSMLNENLQFNLETSRILEALSKFEN"
     gene            521..1633
                     /locus_tag="VLL95_04925"
     CDS             521..1633
                     /locus_tag="VLL95_04925"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSR38235.1"
                     /translation="MIAKVRDRLLLFWHTNKWMALLQAIAAKLNRQKIVVFNKYHPIY
                     TDFFFGEKMGPIKWVFVKNDWVESLPARWMIKMANAFHIDASCYNKSFENSAKPLIVE
                     CEGTAQGAYWKNSAVKALYFQSRYAGRMQLGQDETRLLYPAINANRSFKDLRRKEGIT
                     LLTVGHGGFIKGIDISYAVYKELKKRGYNTRLVIAGSLGHNFDLYPEVSKEAYAEAGF
                     EQMEKEMLADPGVVLRPFRRWELLNEIYPSTNVLLHFSRMETFGFTILEDISFGIPVV
                     SVKFKAIPEMVDHGFNGFLCNPFNWDGASPLDELCMNTPAWKEKCIAEGVEYVEAILR
                     DDKLEETMRKNAFEKARQFDFSIRHLELSRMYNTGI"
     gene            1741..2871
                     /locus_tag="VLL95_04930"
     CDS             1741..2871
                     /locus_tag="VLL95_04930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38236.1"
                     /translation="MRRPRYFAESLFQDGFSVTVIFTCTGQVDTTCENEAGGKLRLVS
                     IPGVKQEIASSKLLNKLRTTMQLARYGDFSGKWHSAVEKKIDALHLRFDVVVSFFTPR
                     GPLYSAYCLKARHQFKSIFDLQDPYHEGLTSGLSKIVLKKCFRRIMRSADVVFCVNKE
                     WSRELEVDFGIRATYLPHVIEDPVPADDSANIHEKRSIVFFYSGSLEEDLQDPGLFFR
                     CLDKLEKSGLYDSVEFRYAGNQSKHNYFSTTLPLGIKYTYLGWLSRESLYEEISNADL
                     LCVFPITSRTYKTCIPSKFYEFCRFPKPIMIIGDDTGAFRDEMGDSFDRQFVIRSEQH
                     FFEKIKAYRIADAGGFFRANEDFNYTYSLPVVYQQFRKQLLC"
     gene            2865..>3667
                     /locus_tag="VLL95_04935"
     CDS             2865..>3667
                     /locus_tag="VLL95_04935"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR38237.1"
                     /translation="MLAFVTHPYHRGGVTSWIKDAFVECKQKGIPSALVTVAPSKPFI
                     SGKGRPSMVEFVSIKDGLYAAKADYKFELGLFNARVKVYQTLIRKNIPEGSVLIPSDD
                     DACWAACCSLANHYPVIGVLHADDPHYYQLHQQFGGYLAGVVSVSSRILKSASPTQLP
                     ARVIPCGINMDHFQPGVKLSRILWVGRVEEEQKRVSDVVKVCQQLLKSHPGWTVEVYG
                     HGDRLPWLENEKNRLGLANLVLHGWQDAVTIAHAMRHASVLLQTSNYEG"
BASE COUNT         1017 a          736 c          909 g         1005 t
ORIGIN      
        1 gtgcgattga agaagcagcc ccttttcgaa aaagaatacc agcaagcggt tcaacagctg
       61 atagcatcaa ttgctgcaac aaataatgag aacgctttcg acaaagtgtt catttaccga
      121 aagggattgc ggagtttgga aaacaaccat gctgtactgg agtgtttggc tcaattggga
      181 ttttattgct ttgatccggg cgaccatcct gtgtcttttc aggtagcggc actggccaaa
      241 gcaagtgtgg tggtaggtgt acatggtgcc ggcctcacca atatcctgtt ctccagtaaa
      301 ctcaggtttt tgctggaatt aatgccgggg aatatgaagc ctaaccatta cagggagata
      361 gcagtgacca aaggggcatc atacgcttgt ttacagggtt caatgctcaa tgagaacctg
      421 caattcaacc tagagacatc cagaatatta gaggcacttt caaaatttga aaattgatgc
      481 ccctgcactc ttcatatttc acacgtaatc aattggcatt atgatcgcaa aagtcagaga
      541 ccggttatta cttttttggc acaccaacaa atggatggct ttgctgcagg ccattgctgc
      601 aaaattgaac cggcaaaaaa ttgtggtttt caacaagtac catcccatct ataccgattt
      661 ctttttcggt gagaaaatgg ggccaatcaa atgggttttt gtaaagaatg actgggtgga
      721 aagtttgcct gcccgctgga tgataaaaat ggccaatgca tttcacatcg atgcatcctg
      781 ctacaacaaa agtttcgaaa actccgcaaa gcctttgatt gtagaatgtg aggggactgc
      841 acaaggagcc tattggaaaa atagtgcagt aaaggcgctt tatttccaga gccgatatgc
      901 gggtagaatg cagcttggtc aggatgaaac acggttgctg tatcctgcaa tcaatgccaa
      961 cagaagtttc aaagatttga ggagaaaaga gggtattaca ctgttaactg ttgggcatgg
     1021 gggatttatc aaagggattg atatttccta tgctgtgtac aaagaattga aaaaacgtgg
     1081 atacaataca agacttgtga ttgccggctc tttggggcac aatttcgatt tgtatcccga
     1141 agtgagtaag gaagcgtatg cagaggctgg ttttgaacaa atggaaaagg agatgttggc
     1201 cgatcctggt gttgtgttac gcccattccg taggtgggaa ttactaaatg agatttaccc
     1261 ttcgaccaat gtgctgttgc acttcagcag gatggaaact ttcggcttca ccatcctgga
     1321 agacatctcc tttggcattc ctgttgtatc ggtaaaattc aaagccatac ctgaaatggt
     1381 tgaccatgga ttcaacgggt ttctttgtaa tccgttcaat tgggatggag cctccccact
     1441 ggatgaattg tgcatgaata cgccggcgtg gaaggaaaag tgcatcgcag aaggagttga
     1501 atacgtagaa gctatcctca gggatgataa gcttgaagag acaatgagaa agaatgcgtt
     1561 tgaaaaagcc aggcaattcg acttttcaat acgacatctt gagctgtcaa gaatgtacaa
     1621 taccggcatt tgagcatgtc aagccaaatt ctattttaag acaacttgag ccacaagcct
     1681 gagatattgt ttttgtgctg ggagtacgaa gggtacaatt caccgcaaac tgctgccttg
     1741 gtgagaagac cgcgatattt cgcagaatca ttgtttcagg atggattcag cgttactgta
     1801 attttcacct gtaccgggca agtagacaca acctgcgaga atgaagcagg aggcaaactg
     1861 cggctggtat ccatcccggg tgtgaaacag gaaattgctt ccagcaaact gctgaacaaa
     1921 cttcgcacca ccatgcagtt ggcgaggtat ggagattttt ccggcaaatg gcattcagca
     1981 gtagaaaaaa aaattgatgc cctgcatctg cgttttgatg tagtcgtttc attctttaca
     2041 ccaaggggac cattgtactc cgcgtattgt ctgaaagcca ggcatcaatt caaatccatt
     2101 ttcgatttgc aggatcccta ccacgaaggt ttgaccagcg gattgtcaaa aattgtactg
     2161 aagaaatgct ttcgcaggat aatgagaagt gcggatgttg tgttttgtgt aaacaaagag
     2221 tggtctcgtg aattggaagt cgattttggg atcagggcta cctacctgcc tcatgtgata
     2281 gaagatcctg tgcctgctga tgattcagcg aacattcacg aaaaaagaag tatcgtgttt
     2341 ttttattcag gatcgctgga ggaagatttg caggacccgg gattgttttt cagatgtttg
     2401 gataaacttg aaaagtcagg cttgtatgat tcggtcgagt tccgttatgc gggcaaccaa
     2461 tcgaaacaca attacttcag caccactttg ccacttggaa tcaagtatac ttatttgggc
     2521 tggttgtcca gggaatcctt gtatgaagag atcagtaacg cggatctgct gtgtgttttt
     2581 ccaattacat cccgtactta caagacctgc atacccagta agttttacga attctgccgc
     2641 tttccgaaac ctatcatgat cataggtgat gatacaggtg catttagaga tgagatgggt
     2701 gattcatttg acaggcaatt tgtaatcagg tcggaacagc acttttttga aaaaatcaag
     2761 gcctatcgca ttgccgatgc cggcggcttt ttccgggcca atgaagattt taattatacc
     2821 tacagtttgc ctgtagttta ccagcaattc aggaaacaac tgctatgcta gcttttgtga
     2881 cgcaccccta tcatcgggga ggagtgacca gttggatcaa agatgcattt gttgaatgca
     2941 aacagaaagg cattccttca gctctggtca cagtagctcc ttcaaagcca tttatttcag
     3001 gcaaaggacg tccttccatg gttgagtttg tctcaatcaa agacggattg tatgcggcca
     3061 aagcagatta taagtttgaa ttaggactgt tcaatgcgag ggttaaggtt tatcaaaccc
     3121 tcatcagaaa aaatatcccc gaaggatctg ttctgattcc ttcagatgac gacgcctgct
     3181 gggcagcttg ctgttcactt gctaatcatt atccagttat tggtgtgctg catgctgatg
     3241 atcctcatta ctaccagttg caccagcagt ttggcgggta tttggctggt gtcgtctctg
     3301 tttccagcag gatactgaag tcagcatctc ccacccaact gccggccagg gttattcctt
     3361 gcggaatcaa tatggaccat tttcagccag gcgtaaagct gagcaggatt ctctgggtag
     3421 gaagggtgga ggaagagcaa aagcgggtga gtgacgtggt gaaagtgtgc cagcaattgc
     3481 tgaaaagtca tcctggttgg acagttgaag tgtatggaca tggagaccgc cttccctggc
     3541 tggaaaatga gaagaacagg cttgggcttg ccaatctggt tttgcatggc tggcaggacg
     3601 cggtcaccat tgctcatgct atgcgccatg catcggttct gttgcagact tcgaattatg
     3661 aagggat
//
LOCUS       DATIQF010000301         2471 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_35083, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000301 DATIQF010000000
VERSION     DATIQF010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2471)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35083"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1007)
                     /locus_tag="VLL95_04940"
     CDS             complement(<1..1007)
                     /locus_tag="VLL95_04940"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HSR38238.1"
                     /translation="MSTNNKQLSRRQFVRMSGLTGAALTIGFYLPSFGKEGSVEFLTG
                     ENASAAGIDLTAWISIDKNGKVTLINHRSEMGQGSFQSVPQIIAEELEVRMEDINVVF
                     AQGHPSKYGSQVTGGSSTVRGSYKALLLTGATAREMLMEAAAKKGGVAKSECYAENGQ
                     VIHRPSGRKMGYGDLVEDAAKLEIPKEVPLKQRKDYKLIGKPLPRIDNTVKILGTAEF
                     GLDKTLPGMLHATVERSPRFHGKVKSFDATAAKAVPGVKDVFKVSMPVFGFTREGVAV
                     VATSTWAALQGRKALKVTWDDTGIEILSTDALYKRMRADLDKPGNSVRTAGNFADNFL
                     TA"
     gene            complement(1035..1511)
                     /locus_tag="VLL95_04945"
     CDS             complement(1035..1511)
                     /locus_tag="VLL95_04945"
                     /inference="COORDINATES: protein motif:HMM:NF024485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HSR38239.1"
                     /translation="MFRTMPTYNLAINGKSYSVEAEANTPLLWVLRDLLQLTGTKYGC
                     GIAVCGACTVHFNGSPVRSCTVPISVAAKQKITTIEGLSPDGKHPLQLAWIEEQVPQC
                     GYCQTGQIMTAAALLKSNPNPSDEDIAAALQGNLCRCGTYQRIAKAVKKAAAMPQG"
     gene            1670..2035
                     /locus_tag="VLL95_04950"
     CDS             1670..2035
                     /locus_tag="VLL95_04950"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: protein motif:HMM:NF013222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HSR38240.1"
                     /translation="MAKKKTTTGPVAGKQSFFEDVWEVVKLVPRGRVTTYGAIAAYLG
                     TKMSARMVGWAMNAAHQVAGVPAQRVVNRNGMLSGKAHFGTPTRMQELLKADGVMVEN
                     DTVVNFSELFWDPATELGL"
     gene            complement(2048..>2471)
                     /locus_tag="VLL95_04955"
     CDS             complement(2048..>2471)
                     /locus_tag="VLL95_04955"
                     /inference="COORDINATES: protein motif:HMM:NF016153.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF420 domain-containing protein"
                     /protein_id="HSR38241.1"
                     /translation="NSLIAVLLLLALVAVKNGRYQLHKKLMMGALVLSIVFLLSYIAH
                     HLLAGDTRFGDTNFDGVLDEAEKTAAGAMRMVYFTILLTHIFLAAVILPFILFTAYRA
                     LTAEFSQHKKLARITWPLWFYVAVTGPVVYLMISPYYH"
BASE COUNT          592 a          629 c          649 g          601 t
ORIGIN      
        1 gcagtcagga agttgtcggc aaaattgcct gcggtacgta cgctgttgcc cggcttgtca
       61 agatcggcac gcatgcgttt gtacagggca tcggtgctta aaatctcaat gccggtgtcg
      121 tcccaggtta ccttcaaagc ttttcggcct tgcaaagccg cccaggtact ggtggctacc
      181 accgccacac cttcgcgggt aaatccaaac acgggcatac tgaccttgaa tacatctttt
      241 acacccggca ccgctttggc cgctgtggcg tcgaagcttt tcacctttcc atgaaagcga
      301 ggacttcttt ccaccgtggc atgcagcatg cccggcaatg tcttatccaa tccaaactcg
      361 gccgtgccca gaattttaac cgtattgtct atacgcggca aaggctttcc gatcagtttg
      421 tagtccttac gttgcttgag cggcacctct tttggaattt cgagtttggc cgcgtcctca
      481 accaaatcgc catagcccat tttccttccg gaggggcgat ggataacctg cccgttttcc
      541 gcataacact cgcttttggc aacaccccct tttttggctg ccgcttccat gagcatttca
      601 cgggcggtgg cgccagtaag caacaaggct ttgtaagatc cccgaacggt ggaactgccg
      661 ccggtgacct ggctgccata cttggaagga tgtccttgcg caaaaaccac attgatatct
      721 tccatgcgta cttccagttc ttccgcaatt atctggggaa ccgactggaa ggagccctgc
      781 cccatttcgg agcggtggtt gatgagcgtc actttcccat tcttgtcaat cgagatccag
      841 gccgtcagat ctatgcctgc tgccgatgca ttttcaccag tcaggaattc aactgatcct
      901 tctttgccaa atgatggcag gtaaaagccg atggtaagag cggcgccggt aagcccgctc
      961 atgcgtacaa actgcctgcg ggacaattgt ttattgttgg tagacatgtt aattgctttt
     1021 tgaagtgaaa caacttagcc ttgcggcatg gcagcagctt tcttgactgc ttttgcaatg
     1081 cgctgataag tgccacagcg gcaaaggttg ccctgcaagg ctgcagcaat gtcttcatca
     1141 gaaggattgg gattggattt cagcaatgcc gcagcggtca ttatctggcc ggtctggcaa
     1201 tagccgcact gcggcacctg ctcctctatc caggctaact gaagcggatg tttgccgtcg
     1261 ggcgataatc cttcgatggt ggttattttt tgttttgccg ccacagagat ggggaccgta
     1321 caggatcgta ccggagatcc gttgaagtgc acggtacagg cgccacacac tgcaatgccg
     1381 catccgtatt ttgttccggt gagttgcagt aaatcgcgaa gcacccaaag cagtggcgta
     1441 ttggcctcgg cctccacgct gtaagatttg ccattaatgg ccagattgta agtaggcata
     1501 gtccggaaaa tttctacggt tcaaaatacc aattgaatgc tgaaccgcaa gtcttgcttt
     1561 gaggtgaacg gcaaacaaag ggcaatattc attgatcaga aaggtacgaa gcgaattggg
     1621 caatcagtgc cttttatttc attgttttaa gtgcttattt tagtacgaca tggccaaaaa
     1681 gaaaacaaca acaggacctg tagcagggaa gcagagtttt tttgaagatg tgtgggaagt
     1741 ggtgaaactg gtaccccgcg gccgggtcac cacttacggc gctattgccg cctacctcgg
     1801 tacaaaaatg agtgcccgca tggttggctg ggccatgaat gcagcgcacc aggtggccgg
     1861 tgtgccggcg caacgggtgg taaacaggaa cggaatgctc agtgggaaag cacactttgg
     1921 aacccctacc cgtatgcagg aattgctcaa agccgacggt gtaatggtgg aaaacgacac
     1981 cgttgtcaat ttctccgaac tgttttggga tccggccacg gagctgggat tgtaatgccc
     2041 tttctgttta gtggtaataa gggctgatca tgagataaac tactggtcct gtaacagcca
     2101 catagaacca caatggccag gtgatccgtg ccagtttctt gtgctgggaa aactcagccg
     2161 taagcgccct gtaggccgtg aacaggataa acggcaggat gacagcagcg aggaaaatat
     2221 gggtaaggag aatggtgaaa tacaccatgc gcatagcccc agcagcagtt ttttcagcct
     2281 catcgagcac gccgtcaaaa ttggtatcgc caaaccgggt atcgcctgcc agcaaatgat
     2341 gggcaatata ggaaagcagg aaaacgatgc tgagcaccaa tgcgcccatc atgagttttt
     2401 tgtgcagctg gtacctgccg ttcttcaccg ccaccagagc cagcagcaac agcacagcga
     2461 tcaaggagtt g
//
LOCUS       DATIQF010000302         2642 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_50476, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000302 DATIQF010000000
VERSION     DATIQF010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2642
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50476"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            286..594
                     /locus_tag="VLL95_04960"
     CDS             286..594
                     /locus_tag="VLL95_04960"
                     /inference="COORDINATES: protein motif:HMM:NF019491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dabb family protein"
                     /protein_id="HSR38242.1"
                     /translation="MSIIHHVFFWLKEPDNNTHAEQLKKGLQTLAAIPQVQQLIIGVP
                     ASTEKREVVDNSWQVSELMYFQSLEDQAAYQVHPVHKAFVEQYSYLWSKVVVYDMNAA
                     "
     gene            687..1358
                     /locus_tag="VLL95_04965"
     CDS             687..1358
                     /locus_tag="VLL95_04965"
                     /inference="COORDINATES: protein motif:HMM:NF024579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38243.1"
                     /translation="MAQKADSLAQQSYLQVYRRAIQYDDMPSAAYALTNYLMMGGQAQ
                     FKDTLAVIYYRSGNPNGSYKLAKEIHEGDPKNVTALSLLADISGRAGDTKTSLEWYEK
                     LCVLAPQPFNVYQMATRQFILERIGECRASLNKVVADSVNARKESVSLEIGSGQNENV
                     PVLAAAYNMLGALAYRDKKTEEAKRYYELAVKEFPDFVIARQNLEGMKPKPASKPAAA
                     AKPKS"
     gene            1476..1838
                     /gene="rplS"
                     /locus_tag="VLL95_04970"
     CDS             1476..1838
                     /gene="rplS"
                     /locus_tag="VLL95_04970"
                     /inference="COORDINATES: protein motif:HMM:TIGR01024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HSR38244.1"
                     /translation="MNQQAINFVHEQLTPSRELPKFKAGDNITVNYKVVEGNKTRIQS
                     FKGDVIKRQGNGATASFTVRKVSDGVGVERTFPVVSPHIESVVVNKVGKVRRARLFYL
                     RERAGKSARIKEKRFSAE"
     gene            1965..2180
                     /locus_tag="VLL95_04975"
     CDS             1965..2180
                     /locus_tag="VLL95_04975"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HSR38245.1"
                     /translation="MTTLLFISWPGGGEWILIVLAVLVLFGGRKIPEFMRGLGKGIRE
                     FNDAKSNVKKELEEGMNEKDKKAEAGS"
     gene            2266..>2642
                     /locus_tag="VLL95_04980"
     CDS             2266..>2642
                     /locus_tag="VLL95_04980"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HSR38246.1"
                     /translation="MSFEFRSIAQYHKDLAAGRTSCSSAVAHYLDQINACSPLNAMVH
                     VFAEEAMSRARELDAQLAAGKPFLPLHGVVISIKDVICYAGHPVSAASKMLKGFDSLF
                     SATVVERVLAAGAIIIGTTNCDE"
BASE COUNT          711 a          659 c          641 g          631 t
ORIGIN      
        1 gacctgagtg gaaacacgac tggccgacct ggcgtgcagt gttgccacat taccttgaca
       61 caaggctcta accaaatgat tgataactct tacaagcact tccaccaatg gaggtgcttt
      121 ttttctgtgc cacaacacca gattacggcg gctggattat ctttccccgg caaattgaac
      181 ataaccatgg ccataaagcg tcgccggttt ttgaccacat tattcatgtc cggagcggca
      241 gtggcaactg ccagtacgtt gcagccaaca tccccagtaa aacctatgtc catcatacac
      301 cacgtatttt tctggctgaa agaaccggac aataacaccc atgccgaaca attgaaaaaa
      361 ggccttcaaa cccttgctgc tattccgcag gtgcaacaac tcatcattgg cgtacccgcc
      421 agcaccgaaa aaagggaagt ggttgacaat agctggcagg tgtcggaact catgtatttt
      481 caatcgctgg aagaccaggc agcctaccag gtacacccgg ttcacaaggc ttttgtggag
      541 caatacagct atttgtggtc aaaggtggtg gtttacgata tgaatgccgc ctgaccaaat
      601 gacctcgcct aaccatccaa acacataaaa agaccatgca gaaatttttg ttttccgcct
      661 tgcttttgac ttcaaccctg ccgttattgg ctcagaaagc cgacagcctt gctcagcaat
      721 catacctcca ggtttaccgc cgtgccatcc agtacgacga tatgccgagt gccgcctatg
      781 ccctcaccaa ttatttgatg atgggtggcc aggcccaatt caaggatacg ctggcagtca
      841 tttactatcg gagcggaaac ccgaatggat cctataaact ggccaaggaa attcatgagg
      901 gcgaccccaa aaatgtaacc gcccttagcc tgttggcaga catcagcgga agggccggag
      961 acaccaaaac cagcctcgag tggtacgaga agctctgcgt tttggcaccg cagcctttta
     1021 atgtttacca aatggcaacc cgccagttca tccttgaaag gattggagaa tgccgggctt
     1081 ccctgaacaa agtagtggct gattcagtaa atgcccggaa agaatcagta agtcttgaaa
     1141 taggatccgg gcaaaatgaa aatgtaccgg tgctggctgc tgcctacaat atgctggggg
     1201 cgctcgccta ccgcgacaaa aaaacggaag aggcaaagcg ctattatgaa ctggcggtaa
     1261 aggagttccc cgattttgtg attgcccgcc aaaacctgga aggcatgaaa cccaaaccgg
     1321 catccaaacc tgctgccgca gctaagccaa aaagttaaga aaggctgaaa gctggcagtt
     1381 tccggcgttt cactggtgtt tccgcaaaaa gccttggttt ttattttgcg ggaaagattc
     1441 acccccttac ctttgccgtc ctaaaaaata gagccatgaa ccagcaggct atcaacttcg
     1501 tacacgagca attgactccc tccagggaac ttcctaagtt taaagcaggt gataacatca
     1561 ccgttaacta taaagtagtt gaaggcaata agacccgtat ccagagcttt aaaggcgatg
     1621 tgatcaagcg ccagggcaat ggtgctaccg ccagcttcac cgttcgtaaa gtaagcgatg
     1681 gcgtaggcgt agaacgtact ttcccggtag taagccctca cattgaaagc gtagtggtga
     1741 acaaggtagg caaagtgcgt cgtgcccgtc tgttctactt gcgtgagcgt gccggcaaga
     1801 gcgcccgtat caaggaaaag cgattttcag ccgaataata ttgcagcatt gctgacaaaa
     1861 ggaacgctat ggcgttcctt ttttgttagg cacttgttac agcaacaaaa aatacacaaa
     1921 tcgaaggcga agcctttacc tttacaacct aaattttctt tgtcatgacg actttgttgt
     1981 ttatttcctg gcctggtggt ggtgaatgga tactgattgt actggcagta ttggtgttgt
     2041 ttggcggccg caagattcct gaattcatgc gtggcctggg caagggtatt cgtgaattca
     2101 acgatgccaa gtcaaacgtg aaaaaggagc tggaagaagg catgaatgaa aaggacaaaa
     2161 aagctgaagc tggttcctga ttgcttgttc ctccccatta ttacacaacg aattgaagca
     2221 gatgccggca cctaagcccg gcacctgctt tttgttttag cgcctatgtc ttttgaattc
     2281 cgttccattg cccaatacca caaggatttg gcggccggcc gcactagctg cagttctgcc
     2341 gttgcccatt acctggacca aataaatgcc tgcagcccac tcaatgccat ggtgcatgtt
     2401 tttgcggaag aagccatgag cagggcccgg gagttggacg cacagttggc cgctggcaag
     2461 ccatttttac cgctgcatgg tgtggtcatc agcataaaag acgtgatctg ttatgcgggc
     2521 cacccggttt cagctgcctc caaaatgcta aaaggatttg attcattgtt ttcggctacg
     2581 gtagtggagc gggtgttggc cgcaggtgcc atcatcatcg gcactaccaa ttgcgacgaa
     2641 tt
//
LOCUS       DATIQF010000303         4858 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_80850, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000303 DATIQF010000000
VERSION     DATIQF010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4858
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80850"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            104..634
                     /locus_tag="VLL95_04985"
     CDS             104..634
                     /locus_tag="VLL95_04985"
                     /inference="COORDINATES: protein motif:HMM:NF012479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HSR38247.1"
                     /translation="MKYLSVLLALALMAFVPASKPSIHQFKVASIDGGTIDFSQFKGK
                     KVLVVNTASKCGYTYQYENLEKLYEQYKDKLVIVGFPANNFGGQEPGSNEEIKEFCSS
                     KFNVKFLMAAKVSVKGSDMAPIFKWLTQKSENGVLDANIGWNFNKFLLDENGQLIQHF
                     ASRVEPTDEAITKYLK"
     gene            762..2045
                     /locus_tag="VLL95_04990"
     CDS             762..2045
                     /locus_tag="VLL95_04990"
                     /inference="COORDINATES: protein motif:HMM:NF024575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38248.1"
                     /translation="MDEWFFLSPYIAPMYFPDVIGQHETQQHLLDLVANNRLSHALLL
                     VGKEGSGLLPLAVNFGQYVVSMPAQQSAAPPPADLFGGGTDLFGEPTATSAPLALQGE
                     GRGGEGIDPMAVQLQHPDLHFSYPVLPKKPGDKPVSTDYAAEFREFYKLMPYGSGFDW
                     LQFINAENRQGNITAEECNDIIRKLSLKTFKARYKVLVMWLPEYLGNEGNKLLKLIEE
                     PPVDTLFILATENESQLLGTIVSRCQVIRVPPLTEEDIEQALINRCGADADTARQLAL
                     VCEGNYHEAQQLLQHNEDDLNGLLRDWLNAALLRGAKAFERFELQNKFVTAASQLGRE
                     RQKQLLRYFIQLIEQSIRIRLVGEDRLHLPAAEKDFAQRLNKFSGLGQQKAMAEELEK
                     AIYYIERNANAKMLFHALTLKLRAIILEKTIFLTQ"
     gene            2494..3762
                     /gene="ricT"
                     /locus_tag="VLL95_04995"
     CDS             2494..3762
                     /gene="ricT"
                     /locus_tag="VLL95_04995"
                     /inference="COORDINATES: protein motif:HMM:NF041131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory iron-sulfur-containing complex
                     subunit RicT"
                     /protein_id="HSR38249.1"
                     /translation="MNVHDWLANLPFADPNSSCKIVEVSFNQGSRKEYYRNPSLQYYS
                     KGELVTVEGVGGFDVGEVSLSGELVRMQLKKRNIKEDSEDIKRILRRASAADIAKWEE
                     SKAREKEALVRSRAMARQLGLQMKLAEVEIQADGKKATFFYTADDRVDFRELIKLYAG
                     EFKVKVEMRQIGPRQEAGKVGGIGSCGRELCCSTWLTDFKSVNTAAARYQNLSINQAK
                     LSGQCGRLKCCLNYELDTYLDALQHFPNDADSLEIARGKAYLVKKDIFKNLMWYTLPD
                     STKQYPLTLKRVQEIKAMNRNGERPDDLQAVEVVSSKPREVEPEFVDVVGQISLRSLE
                     KTSRRQREKERGRQPQGRGQQGGQQQQKPAQPGQQQRPPRQQPPQNQQRPPQQQQQQR
                     PPQQGQSGGGNNQRRNKPPRGPKPPKQEGS"
     gene            3877..4038
                     /locus_tag="VLL95_05000"
     CDS             3877..4038
                     /locus_tag="VLL95_05000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38250.1"
                     /translation="MEEVVKKSTGKHWALFFFWTVVMFAVMFSTYGQWFWLILPFVTT
                     EFAKAMDLL"
     gene            complement(4097..>4858)
                     /locus_tag="VLL95_05005"
     CDS             complement(4097..>4858)
                     /locus_tag="VLL95_05005"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR38251.1"
                     /translation="FPSPFTSLCKQLGLHKLFPHSKIFARYYLGHLPDHETNVVEVLA
                     GAFMLLRKEVLDSVGSFDEQFFMYGEDIDLSYRITQAGWKNYFFAGSSIIHFKGESTA
                     KQSLQYVKVFYQAMLLFVKKHFHGRGALLYRLLLYAGIALRGMLGAITRLFVKHEPQP
                     PIPPELKLQFHGSATASLPSQVKLGNESLPLQPDATAQQHLHCIGSGWPASAAIQWLE
                     QHGAHTPCWLHVQDTGSMVLSNDKNKAGLVAVFPR"
BASE COUNT         1272 a         1343 c         1306 g          937 t
ORIGIN      
        1 gacctgggct gctacgaaaa acagtgaccg ctggcttcag gtcgaaaaaa cttccaacct
       61 ttgtggtctt catttgttca aattattcaa aaacactcca ttcatgaaat acctatctgt
      121 tttgctggcc ctggcattga tggcctttgt gccggcttcc aaacccagca tccaccagtt
      181 caaagtagcc tccattgacg gcggcaccat cgacttttcg cagttcaaag gcaagaaagt
      241 gctggtggta aataccgctt ccaagtgtgg ctacacctac cagtacgaaa acctggaaaa
      301 actgtacgag caatacaaag acaagctggt gatcgtgggt tttccggcca acaattttgg
      361 cggccaggaa cccggcagca atgaagagat caaggaattc tgcagcagca aattcaatgt
      421 aaaatttttg atggcggcca aggtgagtgt aaaaggcagc gacatggcac ccatcttcaa
      481 atggctgacc cagaaaagtg agaatggtgt actcgatgcc aacatcggct ggaacttcaa
      541 taagtttttg ctcgatgaaa atggccagct catccagcat tttgccagcc gggtagaacc
      601 cacagatgaa gccatcacca aatacctgaa ataaccgcta ctggctgtta tagaactcca
      661 cttcgttatc aacctgatgg tccccgtctc ccgacgggga ccattctttt tgtcgactgc
      721 agtcgactgg caatggcatc ctcgtcggga gacgaggatg agtggacgag tggttttttc
      781 tttcccccta tattgcaccc atgtatttcc ccgacgtgat tggacagcac gaaacccaac
      841 agcacctgct ggacctggtg gccaacaacc gcctgagcca tgccctgctg ctggtgggca
      901 aagaagggag tggcctgctg ccgctggccg tcaactttgg gcaatatgta gtaagcatgc
      961 cggcgcagca gtcggccgcc cccccacccg ccgacctgtt tggcgggggc accgacctgt
     1021 ttggggagcc aaccgccact tcggcccccc tcgcccttca gggagagggg cgggggggtg
     1081 agggtattga ccccatggca gtccaactac agcaccccga cctgcacttc agctaccccg
     1141 tgctgcccaa aaagccgggc gataaaccag taagcaccga ctatgccgcc gagttccgcg
     1201 aattctacaa actgatgccc tatggcagcg ggttcgactg gctgcagttc atcaatgccg
     1261 aaaaccggca gggcaatatc accgccgaag aatgcaacga catcatccgc aagctgagcc
     1321 tcaaaacctt taaggcccgc tacaaagtgc tggtgatgtg gctgcccgaa tacctgggca
     1381 acgagggcaa caaactgctg aaactgatag aagagccgcc ggtggacacc ctgttcatcc
     1441 tcgccaccga aaacgagagc cagctgctgg gcaccatcgt gagccgctgc caggttataa
     1501 gggtgccgcc gctgaccgaa gaagacatag agcaggcgct catcaaccgc tgcggcgccg
     1561 atgccgacac agcccgccaa ctggcgctgg tgtgcgaagg caactaccac gaagcccagc
     1621 aactgctgca gcacaacgaa gacgacctga acggcctgct ccgcgactgg ctgaatgccg
     1681 ccctgcttcg gggcgccaag gcctttgagc ggtttgaact gcaaaacaaa tttgtaacgg
     1741 ccgccagcca actgggccgc gaacgccaga aacaactgct gcgttatttc atacagctca
     1801 ttgagcaaag catccgcatc cgcctggtag gcgaagaccg cctgcacctg cccgccgccg
     1861 aaaaagactt tgcgcagcgc ctcaacaagt tcagcgggct gggccagcaa aaagccatgg
     1921 ccgaagaact ggaaaaagcc atctactaca ttgagcgcaa tgccaatgcc aaaatgctgt
     1981 ttcatgcgct gacgctgaag ctgcgggcca tcatactgga gaaaaccata tttttgacgc
     2041 agtaacccgt gagaaggatt ttgtgaggat ttgttttttg tgaaccaaca ttggtgctca
     2101 tggcatcggt gttgtgtcac tcacttcacc agttgatact ttattcagca taaaaacggc
     2161 acaattaact tgtgccccgc ttgcctcccc ccaccgaccc catcggtagc ctcgcattag
     2221 ccggccagga ggaaagcttg caaccaactt gccgccacct gcacggcagt acaagtgagt
     2281 gacacaacaa aagctgaaac aagcccctgg ctggttccca aaaaaatgga agggttgaaa
     2341 atgaaattcg tgggttgaga aacgacgccc cgaaatttcg aattgttcat taatagaccg
     2401 acagaaaaag atatgggctg tggaagttgt ggaaccggaa aaccgaatgg atgccaaagc
     2461 aatggcggct gcagcagcgg cggctgtaat cgcatgaacg tgcatgattg gctggccaac
     2521 ctgccatttg ccgatcccaa tagcagctgc aagattgtgg aagtaagctt caaccagggc
     2581 agccgcaaag aatattaccg caacccgagc ctgcagtatt acagcaaggg cgaactggtg
     2641 acggtggaag gggtaggcgg tttcgacgtg ggcgaagtga gcctgagcgg cgagctggtg
     2701 cgcatgcagc tgaaaaagcg caacatcaag gaagactccg aagacattaa gcgcatactg
     2761 cgccgggcca gtgcggccga tatagccaag tgggaagaaa gcaaggcccg tgaaaaagag
     2821 gccctggtac gcagccgggc catggcccgc cagctggggc tgcaaatgaa actggccgaa
     2881 gtggaaatac aggccgatgg caaaaaagcc accttcttct acaccgccga cgaccgggtg
     2941 gattttcgcg aactgatcaa gctgtatgcc ggcgagttca aggtgaaagt ggaaatgcgc
     3001 cagattggtc cgcgccagga agccggcaaa gtgggcggca ttggcagctg tggccgcgaa
     3061 ctgtgctgca gcacctggct taccgacttc aagagtgtga acaccgcggc agcccgttac
     3121 caaaacctga gcattaacca ggccaagctg agtggccagt gcggccgcct caagtgctgc
     3181 ctcaactacg agctggatac ctacctcgat gcactgcagc atttccccaa cgatgctgat
     3241 tcactggaaa tagcccgtgg caaggcctac ctggtgaaga aggatatttt caaaaacctg
     3301 atgtggtaca ccctgcccga cagcaccaag caatacccgc tgacgctgaa acgggtacag
     3361 gaaataaagg ccatgaaccg caacggcgaa cgccccgacg acctgcaggc cgtggaagtg
     3421 gtgagcagca aaccccgcga agtggaaccc gaatttgtgg atgtggtggg ccagatcagc
     3481 ctgcgcagcc tggaaaaaac cagtcgccgc cagcgggaaa aagaaagagg ccgccagcca
     3541 caaggccgtg gccagcaggg tggtcagcag cagcaaaagc cggcacaacc gggccagcaa
     3601 caacgcccgc cccggcagca gccgccacaa aaccagcaaa ggccgccgca gcaacagcaa
     3661 caacagcgcc ccccgcaaca aggccagagc ggtggtggca acaaccagcg ccgcaacaag
     3721 cccccccgcg gaccgaagcc gcctaaacag gaagggagtt gattggttaa ttggttgact
     3781 ggttgaaaag gtagctgacc cattgctgcc ctcacaactt gtgaactttt caacttgtga
     3841 acctatattt gcgccactta aaaaaatgca atcctcatgg aagaagtagt aaaaaagagc
     3901 accggcaaac attgggcttt attctttttc tggaccgttg tgatgtttgc ggtcatgttt
     3961 tctacttacg gccaatggtt ctggctgatc ctgcctttcg tgaccactga gttcgccaag
     4021 gctatggacc tgctgtaata agatccggta aaaaaattat tgagacagcc ctgttcgaaa
     4081 gaacggggct gtttgtttac cgggggaaca cggccaccag tccggccttg ttcttatcgt
     4141 tgctcagcac catgctgccg gtatcctgca cgtgcagcca gcagggcgta tgggcgccat
     4201 gttgctccag ccactgtatg gcagccgagg ccggccagcc ggatccgatg caatgcaaat
     4261 gctgttgggc agtggcatcg ggttgtaagg gcaatgattc gtttcccagc ttcacctgtg
     4321 agggcaaaga ggccgtagct gatccgtgaa attgcagttt cagttcagga ggaatgggag
     4381 gctgcggttc atgttttaca aacaacctgg tgatggcacc cagcataccc cgcagcgcaa
     4441 taccagcata cagcaacagc cggtacagca aagcgccccg gccatggaaa tgctttttga
     4501 caaacaacag catggcctgg taaaacactt ttacatactg cagcgattgt ttggccgtgc
     4561 tctctccttt gaaatggatg atgctgctac cggcaaaaaa atagttcttc cagccagcct
     4621 gcgtgatgcg atagctgagg tcgatgtcct cgccatacat gaagaactgt tcatcgaaac
     4681 tacccacgct atcgagcacc tctttgcgca gcagcataaa agcccctgcc agcacctcta
     4741 ccacattcgt ttcatggtcg ggcaaatgac cgagataata gcgggcaaag atttttgaat
     4801 ggggaaacag tttgtgcagc cccaactgtt tgcacaagct ggtaaaaggt gaagggaa
//
LOCUS       DATIQF010000304         3030 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_293715,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000304 DATIQF010000000
VERSION     DATIQF010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3030
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293715"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(259..915)
                     /locus_tag="VLL95_05010"
     CDS             complement(259..915)
                     /locus_tag="VLL95_05010"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: protein motif:HMM:NF003678.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase family protein"
                     /protein_id="HSR38252.1"
                     /translation="MTIHKEGFASIGIATLLLGTLNGLSVWFLSQQYPVWSLAIFFVT
                     FSLWLFIISFFRLPHRQLTIDDRKIICPADGKVVVIEETVDDEYFKSKRLQVSIFMSP
                     LNVHVNRNAVSGEVVYSQYHAGKYLAAWHPKSSTENERHSVVYQVGHNEILVKQIAGA
                     LARRIVNYLGEGMEVKQGEEMGFIKFGSRVDVLLPVNARVKVQMGEKVKGGVTVLAEW
                     "
     gene            complement(1093..1956)
                     /locus_tag="VLL95_05015"
     CDS             complement(1093..1956)
                     /locus_tag="VLL95_05015"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: protein motif:HMM:NF013327.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HSR38253.1"
                     /translation="MALNKEVFKTRAISAVVFVAIMLTGLLWSHWSFLLLFSIIHFGC
                     WWEYFNLLEKIDNSHFSMQQRLGFMAMGYAFMLSFCGPAYSWQQYSLRASFIMPLSIA
                     GFVVLAIGLIYSRTVIRPKAFAGAIAGLLYISVAWGLMLALRQRNMTSFLGDFGWLYP
                     ILLIASIWINDTMAYIVGSMIGKTPLSKISPKKTWEGTIGGAVLAVVVVTLVASLWLK
                     TDWKITAAIAATAAVAGTMGDLLESWLKRRAGVKDSGSMMPGHGGFLDRFDSMLLATP
                     FVWFVVQLLNG"
     gene            complement(2043..2240)
                     /locus_tag="VLL95_05020"
     CDS             complement(2043..2240)
                     /locus_tag="VLL95_05020"
                     /inference="COORDINATES: protein motif:HMM:NF020967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2007 domain-containing protein"
                     /protein_id="HSR38254.1"
                     /translation="MIYKTSLYTDAAIIKGKLEENNIPVQVLNKQDSMYVLTLPGQHE
                     VYVPARFKDIALGILNEVLKN"
     gene            complement(2279..2914)
                     /locus_tag="VLL95_05025"
     CDS             complement(2279..2914)
                     /locus_tag="VLL95_05025"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HSR38255.1"
                     /translation="MLIIVCSGPLIDALTTINKQIPISTSAKAFFDKMEKAYEDQVKA
                     IADVKSLPQFLLSIFMIAILPAVFEEVLFRGALQGLLHRWWKNGWVAIIVTSIVFSAI
                     HGSWYGFLPRVALGMLLGTIFYLTQNLWYSILVHLANNAAVVSYMFYLQRTGQPVSVA
                     SEPSFPLWAGLVSLVVLVILFRWLRKTTEQVVPQEIFYEPANPFDERGNLA"
BASE COUNT          849 a          777 c          707 g          697 t
ORIGIN      
        1 cgctgcagga aagggtatca ttatcctgag caacagtgat aatgcggaaa gcatttttaa
       61 agagctcctg gaaattacca ttggggatac ctatacgcca tggcgttggg aaaactatat
      121 cccttacaat caaaagaatt aaacattcga tcttccttat atgcggcatt gaataaaaac
      181 aggctatgcc aaaatcaaaa cacccgttga atcatcaacg ggtgtttgct tataaatgaa
      241 ttgcggtaaa cacttccatc accattcggc cagcaccgtt acgccgcctt ttaccttttc
      301 gcccatctgc acttttacac gggcatttac cggcagcagc acatctaccc ggctgccaaa
      361 tttgatgaag cccatttcct cgccctgctt cacttccatg ccttcgccca ggtagttgac
      421 aatacggcgg gccagggcgc cggctatctg ctttaccaga atttcattgt ggcccacctg
      481 gtacaccacg ctgtggcgtt cattttcggt gctcgatttg ggatgccacg ctgccaggta
      541 cttgccggcg tggtattggc tgtacaccac ttcgccactc acggcgttgc ggtttacgtg
      601 cacattcagc gggctcatga aaatgctcac ctgcaggcgt ttgcttttga aatactcatc
      661 atctacggtt tcttctatca ccaccacttt gccatcagcc gggcaaatga tcttccgatc
      721 gtcgatggtg agctggcggt gcggcaaccg gaaaaaggaa atgatgaaca gccataagct
      781 gaaagtgacg aagaaaatag ccagcgacca aaccgggtac tgctggctta aaaaccaaac
      841 cgacaacccg ttgagcgtgc ccaacaacaa tgtagcaatg ccaatgctgg caaatccttc
      901 tttatgaatc gtcataattt caattcaatg aaaaaatatg gtgataccgg tggcaggtgt
      961 gcgggcaaaa gtaatggatt ggaaacggaa ctcagggttt gagatttggg gtttttcgtt
     1021 tttggtttga agtggaaggc atagttcatc caaacaaaaa actacaaacg aaaaacaaaa
     1081 aactcctttg tgttacccat tgagcaattg aaccacgaac caaacaaagg gcgtagccag
     1141 cagcatgctg tcgaagcggt cgagaaagcc accatgaccg ggcatcatgc tgccgctgtc
     1201 ctttaccccg gcccggcgct tcagccagct ttccaacagg tcgcccatgg tgccggctac
     1261 ggcagcggtg gccgcaatgg cagccgtaat tttccaatct gttttcagcc agaggctagc
     1321 caccagtgtt actaccacca cagccagcac tgccccacca atggtgcctt cccaggtttt
     1381 cttgggagaa attttactga gtggtgtctt gccaatcatg gagcctacaa tgtaggccat
     1441 ggtatcgttg atccagatag aggcaatgag caggatgggg tacagccagc caaaatcgcc
     1501 gagaaaggaa gtcatgttgc gctggcgcaa tgccagcatg aggccccacg ctaccgagat
     1561 atacagtaag cctgcaatgg ccccggcgaa ggctttgggc ctgatcacgg ttctggaata
     1621 aatcaaacca atggccaata ccacaaaacc tgcgatgctt aaaggcataa taaaactggc
     1681 ccgcaatgaa tactgctgcc agctataagc agggccgcaa aaagaaagca taaatgcata
     1741 acccatggcc ataaagccca gccgctgctg catggaaaaa tggctgttgt caattttttc
     1801 cagcaggttg aaatactccc accagcagcc aaaatgaatg atgctgaaca acagcaggaa
     1861 actccagtga ctccacagca ggcccgtgag catgatggcc acaaacacca ccgcactgat
     1921 ggctcttgtt ttgaatactt ctttgtttaa tgccattttt ctacagttag caagttccaa
     1981 agttcgccgg ttccggcatg gtggaagaag agatagacct taaacccaaa accaaacaag
     2041 gttcaattct tcaatacttc attcagaata ccaagtgcaa tatccttgaa ccgggcaggc
     2101 acatacactt cgtgctgccc gggcagtgta agcacgtaca tactgtcctg cttgttcaat
     2161 acctgcaccg ggatattgtt ttcttccagc ttgcctttga tgatggcagc atcggtataa
     2221 agtgaagttt tatagatcaa aatccaatcc attttgccac cggtaagagg ttaaaagatc
     2281 aagccaaatt acctcgttca tcgaacgggt tggcaggttc gtagaaaatc tcctgcggca
     2341 ccacctgctc ggtggttttg cgcagccatc tgaatagtat taccaacacc accagcgata
     2401 ccaagccggc ccacagggga aacgagggtt cggaagcaac ggataccggc tgaccggtac
     2461 gctgcaggta aaacatgtag ctcactaccg cagcattgtt ggccaaatgc accagtatgc
     2521 tgtaccaaag gttttgtgtg aggtagaaaa tggtgcccag caacataccc agggccaccc
     2581 tgggtaggaa gccataccaa ctgccatgaa tggcgctgaa tacaatactg gtaacgatga
     2641 tggccaccca gccattcttc caccagcgat gcagcaggcc ttgcaaagcg ccccgaaaca
     2701 acacttcttc aaatacagcc ggcaatatgg cgatcatgaa gatgctcagc aaaaactggg
     2761 gcagcgattt tacatcggca atcgctttta cctggtcttc ataagctttc tccattttgt
     2821 cgaaaaaggc tttggctgaa gtggagatcg gtatttgttt gttgatcgtg gtgagggcat
     2881 cgatcaaagg accgctgcaa acgatgatga gcaaactgat gcctgccagt tttcaaacca
     2941 tcgatttctg aaaacccagg gcatcccatc cattgcgaaa acaaatgaag gcaaagccca
     3001 cggcgggtat gaaaaaaccg aaaagcgtac
//
LOCUS       DATIQF010000305         1555 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_126675,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000305 DATIQF010000000
VERSION     DATIQF010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126675"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1023)
                     /locus_tag="VLL95_05030"
     CDS             complement(<1..1023)
                     /locus_tag="VLL95_05030"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HSR38256.1"
                     /translation="MAVAQQSLNSDNLRNVQVDKLSDEEILNYYQREKATGLSDEQLL
                     RLAADRGLPASEIAKLKDRLAVLATASNTKQKSTPAVSTTDAANRVSADAAKMTTSKL
                     AKDSTVFGSELFMEASSVFEPNYKIATPASYALGPGDELLVQVFGYSEQTYNLTVNNE
                     GNVYIPNVGPIAVSGLSVDDAAAKIKNKLAATIYKAIKSGQTKVTVTLGKIRSISVTV
                     IGQASKPGTYSIPSLSTLFNLLYICGGPGNQGSYRNIEVIRGNKLYRKVDLYAFLLRG
                     DRKDNVLLQDQDVVRIPYYDTRVSIDGQVRRSGKFEMQPGETLDQLMTYCGGFSDSAY
                     RSMVKAV"
     gene            complement(1243..>1555)
                     /locus_tag="VLL95_05035"
     CDS             complement(1243..>1555)
                     /locus_tag="VLL95_05035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38257.1"
                     /translation="AFDHNMEGSITIFGELGTVKIGGQYLNELEYQSLSQGALANLPP
                     GNPPNQYGQYTGSMSNHPMVYQSLMDQLSQPATVTTALQEAATTVQVIEHIYEMAGRR
                     S"
BASE COUNT          358 a          397 c          399 g          401 t
ORIGIN      
        1 tacggctttc accatcgacc ggtaagcact gtcgctgaat ccgccgcaat aggtcatcaa
       61 ctgatcgagt gtttctccgg gctgcatttc aaacttgccg gagcgacgca cctgtccgtc
      121 gatagaaacc cgtgtatcgt agtagggaat gcgcacaaca tcctggtcct gcaacaacac
      181 attgtctttg cggtcacccc gcaaaagaaa tgcgtacaaa tccactttgc ggtagagctt
      241 atttccacga atgacctcaa tattccggta gctgccctgg ttgccggggc cgccgcatat
      301 gtaaagcaag ttgaacaagg tgctgagcga agggatgctg taggtaccgg gctttgaagc
      361 ctgcccgata acggtaacac taatgctcct gatcttaccc agtgtaacag tcactttggt
      421 ttggcccgat ttaatggcct tgtaaatggt agccgccagt ttgtttttga ttttggctgc
      481 cgcatcatct acagataaac cacttactgc aataggtccc acgttaggga tgtacacgtt
      541 gccttcgttg ttgacggtga ggttgtaggt ctgctcgctg taaccaaata cctgcaccaa
      601 cagttcatcg ccggggccga gggcataact ggcaggcgtt gcaattttat agttaggctc
      661 aaatacagaa ctggcttcca tgaaaagctc tgatccaaat acagtgctgt ctttggccag
      721 tttgctggta gtcatttttg cagcatcggc agatacccgg ttggccgcat cggtggtgga
      781 aacggctgga gtacttttct gcttggtatt gcttgcggta gccaaaacag ccagccgatc
      841 tttcaatttg gcgatctcgc tggcgggcaa tccccggtca gcagccagtc gcagcaattg
      901 ctcgtcactc aagcccgttg ccttttcccg ctggtaataa ttcaggatct cttcatccga
      961 aagcttgtcg acctgcacgt tgcgcaggtt gtcgctattc agcgactgtt gtgcaacagc
     1021 cactgagcca caaaaaagca gacagaaaat tgccagtata atgccagtta gtttcattgg
     1081 ttgatttggt taaataaacc ccgggccata ggcctttttt aagggagaca tagcagcgtt
     1141 gaagcctgtg aatggtcaaa acctaaaacg atggccatcg ctgcatggta tgccccggta
     1201 aaaataatgg tttgggccaa aacccattga aagagaagac atttaggacc gacgaccggc
     1261 catttcgtaa atgtgctcga tgacctgcac ggtggtggct gcctcctgca atgccgttgt
     1321 gactgtagcc ggctgcgaca actggtccat cagcgattgg tataccatcg ggtgattgct
     1381 catgctcccg gtgtattgcc cgtattggtt gggcggattg cccggcggca aattggccag
     1441 cgctccctgg ctgaggctct ggtattccag ctcgttcagg tattggccgc cgatcttcac
     1501 tgtgcccaat tcgccaaaaa tagtgatgga cccctccatg ttgtgatcaa atgca
//
LOCUS       DATIQF010000306         2767 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_293760,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000306 DATIQF010000000
VERSION     DATIQF010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2767
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293760"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..943
                     /locus_tag="VLL95_05040"
     CDS             <1..943
                     /locus_tag="VLL95_05040"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF044548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HSR38258.1"
                     /translation="DPTSKTVSLSNGEKLSYNRLVLAPGIDFEPLPIAGTQANIDKVV
                     HAWKAGAQTTSLKNQIKSMTSKDTFILTIPPKPYRCPPGPYERACVVADYLKRTKGGG
                     KVIILDANTGIQAEVENFTRAFTQTHKDVITYVPNAGISSINADTGTIVTTSAGTFKG
                     KVLNVIPTHKAGNLITQSGIGINNAGGGKWAGVNVLSYESTAVPLVHIIGDSSSTTQP
                     KAGHIANAEAKVCAAAIIQLLKGEPINQTPVTNSSCFTPITKTTASWLSVVFKYDPLT
                     GTMQPTGAGITESAGATSENYEDMLKWFNNLMSDTFK"
     gene            1139..2488
                     /locus_tag="VLL95_05045"
     CDS             1139..2488
                     /locus_tag="VLL95_05045"
                     /inference="COORDINATES: protein motif:HMM:NF023128.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR38259.1"
                     /translation="MTAGDSLPALAQGAEVLRKNDRKLINAWAMYDWANSAFALVITS
                     AIFPAYYNTVTRVNGVTTINFLGWQIENTAAYSINLGIAFGLVALISPLLSSVSDYAG
                     NHRSYMKFFCYLGSLGCMLLFFFSTHEMVHLALAGMLMATVGYSGSIVFYNSYLPAIA
                     TEDRQDKVSARGYAFGYLGATTLLIMNLVLILNQKALGIQDDTLLPRLSFLFTGFWWL
                     GFAQIPLHKLPKGIYYRESASKNLLNGYHELLKVWHQLRSHKKLRIFLYSFFFYIMGV
                     QTVMFMAASFGEKEVHLKVTQLIITVLLLEYLGLAGAFLFAWISKKTSNARALTLAVV
                     VWIGICAGSYFITTALHFYIAAFFIGMVMGGIQSLSRSTYAKMIPKTQNNAGFFGFYD
                     VCEKLAMMCGLIMWGYLDNLTGSMRNSIIALGTWFAIGLVLLLWMQRLSEPEKTDVS"
     gene            2485..>2767
                     /locus_tag="VLL95_05050"
     CDS             2485..>2767
                     /locus_tag="VLL95_05050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38260.1"
                     /translation="MNTQDLHDHAIPAVGADPKAILEHISHLHEQDVAWKDGRAWSLI
                     YYANEEHEQLLQQAHRLLFNSNFLNPFAFKSLQTLEHEVVAMTAKMLHGN"
BASE COUNT          723 a          711 c          645 g          688 t
ORIGIN      
        1 agatcccacc tccaaaaccg tttcactgag caatggcgaa aaattatcat acaaccgctt
       61 ggtactggcc ccgggtatcg actttgaacc gctgccaata gcaggcacac aagccaatat
      121 cgacaaggtg gtgcatgcct ggaaagccgg tgcacaaacc acttctttga agaatcaaat
      181 taagtcgatg acgagcaagg atactttcat ccttaccatt ccaccaaagc cctatcgctg
      241 tccgcccggt ccttatgaaa gagcctgcgt ggtggccgac tacctgaagc gcaccaaggg
      301 tggtggcaaa gtgatcatac tcgatgccaa cacgggcata caggcagagg ttgagaattt
      361 cacgagggca tttacacaaa cgcacaaaga tgttatcacc tatgtgccta atgcaggtat
      421 cagcagcatc aatgccgata caggcaccat cgtaactaca tcagctggta cattcaaagg
      481 aaaagtactc aatgtgatac ccacgcataa agcaggcaat ctcattacgc aatcaggtat
      541 tggtatcaat aacgctggcg gcggtaaatg ggctggtgtg aatgtgctga gctatgaatc
      601 gacagccgtg ccactggtac acatcattgg cgactcttct tccaccacac aaccaaaggc
      661 cgggcatata gccaatgcgg aagcaaaagt ttgtgcggcc gcgattatcc agctattgaa
      721 aggtgaaccc atcaaccaaa cgccggtcac caactcatcc tgtttcactc ccattaccaa
      781 aaccacagca tcgtggttgt cagttgtgtt caaatacgat ccgcttaccg gcaccatgca
      841 gccaacaggc gctggcatta ccgagtcagc gggtgccaca tcggagaact atgaggacat
      901 gctgaagtgg ttcaacaacc tgatgtcgga tacctttaaa tgacctttcg gatgattggt
      961 ttaaaatccc cgtcaatcaa aactggcggg gatatttttt tcaggcaata cattgaaagt
     1021 tgcgctgtgc cttctcttat caagcaaaat caataaacag cgagttgaaa ccgaaggaat
     1081 atgaaaatga acttttacat gccttgagaa tgaagtaaat tagagaaaac aggcatttat
     1141 gacagctggc gactccttgc ctgcccttgc acaaggtgct gaagtgttga gaaagaatga
     1201 ccgcaaactc atcaacgcct gggccatgta cgattgggcg aactccgcct ttgcgctggt
     1261 gatcacctca gccatctttc ctgcttacta caatactgtc accagggtaa acggcgtcac
     1321 taccatcaac ttccttggtt ggcaaataga aaataccgcc gcctactcca tcaacctggg
     1381 aattgctttt ggcctagtgg ccctcatttc acccctactg tcctccgtgt cagattatgc
     1441 gggcaatcac cggtcgtaca tgaaattctt ttgctacctc ggttcgctgg gttgcatgct
     1501 gttgttcttt ttcagtacgc atgaaatggt gcacctcgca ctggccggca tgcttatggc
     1561 tacagtagga tactctggca gcatcgtttt ttataattcg tatttgcctg ccattgccac
     1621 tgaagatcgc caggacaaag tgagtgcccg tggctacgct tttggctacc tcggcgccac
     1681 cacattgctc atcatgaatc ttgtccttat tctcaatcaa aaggcattgg gaatacagga
     1741 tgacacactg ctgccgcggt tgtccttcct gttcacaggg ttttggtggc tgggttttgc
     1801 acagatcccg cttcacaaac tgcccaaggg gatctattac agggaaagcg cttccaaaaa
     1861 cctgttgaac gggtatcatg aattgctgaa agtgtggcat caattgcggt cacacaaaaa
     1921 gcttcgcata tttctctaca gtttcttttt ctacatcatg ggcgtacaga cggtgatgtt
     1981 catggctgcc tcttttggcg aaaaggaagt gcacctgaaa gtgacgcaac tgatcatcac
     2041 cgttttgctg ctggaatacc ttgggctggc cggcgccttc ctgtttgcct ggatatcaaa
     2101 gaaaaccagt aacgccaggg cacttacgct ggcagtggtg gtttggattg gcatttgtgc
     2161 cggcagctat ttcatcacca ctgccttgca tttctacatt gccgcctttt tcattggcat
     2221 ggtgatgggc ggcatccagt cgctctcccg atcgacctat gccaagatga tacctaaaac
     2281 acaaaacaat gcgggtttct ttggttttta cgatgtgtgc gaaaagctgg ccatgatgtg
     2341 cggcctgatc atgtggggtt atctcgacaa cctcaccggc agcatgcgca actccatcat
     2401 tgccttgggc acctggtttg ccatcgggct ggtgctattg ctatggatgc aacgcctcag
     2461 tgaacccgaa aaaacagatg tctcatgaac acacaagatc tccatgatca tgcaatacct
     2521 gcagtgggtg cagacccaaa agccattctc gaacacattt cccatttgca tgaacaggat
     2581 gttgcctgga aggatggcag ggcatggagc ctgatctact atgccaacga agagcacgaa
     2641 caactgctgc agcaagcgca ccggttgttg ttcaactcca atttcctcaa tccctttgct
     2701 ttcaagagcc tgcagacact ggaacacgaa gtggtagcca tgactgctaa aatgctgcat
     2761 ggaaatg
//
LOCUS       DATIQF010000307         4351 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_248164,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000307 DATIQF010000000
VERSION     DATIQF010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4351
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248164"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1860
                     /locus_tag="VLL95_05055"
     CDS             <1..1860
                     /locus_tag="VLL95_05055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38261.1"
                     /translation="ASDFSLKENKAYWETLNVTASNADATFDKTSFGAASMSIEQPGL
                     ISIFSPTGHTVFAGGSMDFDAEELQMKVGIQTSAISSLQVESIKLIKPFLNLSLTKQN
                     KTAAPPASAEDKKFSDISLERLELVQPAIEFSIKDSSGKQVQSHKTYTGTFVLQQLKT
                     LDAKGKPLITAARASYQTDSANLEANGKSLHPSALGVEARDFAFNPNSKLLRFHIDSA
                     YVKNIAHTIIGKKEDTLEMSVKEIGIRNYPFNMKDSIDWRKLIHTVAFWSDGMDINYK
                     TPRQVIKARQVYVKGNQSISFGLDNFAIQNRNTREEVWAATPYEKGYETIEGGRIRAS
                     GIQLSFPDKKPQVSIGKLATSDLLFTTAKDKTKLEDTVDYRPLLTQTLLKIPIPLFID
                     SVLLQNARVDAHEISKKTKKETSIYFTEINGYLQNVKNHNIKPEDTLDMRVRARFYGT
                     DVVRLHFRQSYYDTLQEFWMRVRMSHFEMPEMNKLLVPLMGLNILSGTVDSLLLVARG
                     NDYFAYGTMDMRYHNLRARLLKTEDTKGKVWVSMANFLTGIFLRKHDNGRTDLLFKER
                     IRKRSIFNFWGKIALEGLLTNLGIKRDKKERKQFEKTVKAFDLSENYWQDDDN"
     gene            1847..4294
                     /locus_tag="VLL95_05060"
     CDS             1847..4294
                     /locus_tag="VLL95_05060"
                     /inference="COORDINATES: protein motif:HMM:NF044972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HSR38262.1"
                     /translation="MTTIKYRDRQKLWCKRLKVTSFLLACLLTLFSGNLWAQQDSSVL
                     VQDSAKTSGTVALDTFVYSHTRKLEAASKIFARWQSALVNIPDTIAIKKQLEQIDTNV
                     NSLLSKLPNKQYLSNLRFLRGNLILTSLALKRLDEAEKQLKRSIALYLQCDQEVKETG
                     FEQSFAAIPASNKKDSALVKQHTIISKTWYAMRQMSNQQIALLNTLQLNVTKSYIRTE
                     FSHTMVLEGLKQFNKNLYSNPKPLISTPRNDSMYLAAKEEARVSMSFIKTMVQVFYRN
                     NGPKLILNLFLFIAFLVIIFNNHKILMHETNNRSQALEMAPMIGTKPIGTALSIGFFI
                     SALLYQNTPAVIMEIIITGQMISISILLWRRVSKQLFWRWIALCLLFLRFGFMNLLVG
                     ISWEARWGLVSLNLGSIYIILSSYKIIRKESKLIGKNWIVLALVVLTSVQQALAVVFN
                     IMGYPDAALVQSVNSIFNLAIAITILLTIRIMEEFLNMVDLRLYKHQLITDEEVGQLR
                     QKVRGYLVLLGVVIWVLAFLNTLNYDKIILENLGAFLNEKQTFGSATFTYANLLTFAL
                     VFIASIWLSQVSSIIIDLFSTRYMAVSGDQRFKNGKLFLRLFILAAGIVIAFIASGIP
                     AQQLTIILGALSVGIGLGLQQLVSNLVSGIIIAIEKPIKVGDVISIGNATGTISEVGL
                     RSTIMTGKNGLKIYVPNGEFLSMPLFNQSTLKARRAIAINFLVSESTPLDKMRQLVKE
                     ALPATPEVMDHPPGEILLNASTEKGLQMTVYCWIARNASESTIRSAAYDNIVTRFQQA
                     GIEFGSNSYSSRMNSDD"
BASE COUNT         1255 a         1062 c          977 g         1057 t
ORIGIN      
        1 gccagcgatt tttctctaaa ggaaaacaaa gcctattggg aaacattgaa tgtaactgcc
       61 agcaatgcgg atgccacttt tgacaagacc agttttggag ccgccagcat gagcattgag
      121 cagccgggcc tcatcagcat attctcccct accggccaca cagtatttgc cggaggcagt
      181 atggattttg acgcggaaga gttgcagatg aaagtgggaa tccaaacttc cgccatctcc
      241 agcctgcagg tggagagcat caaattgatt aaaccctttc tgaatttgtc attgacgaaa
      301 caaaacaaaa cagcggcacc acctgcttct gcagaagaca aaaaattctc tgacatttcg
      361 ctggaaagac tggaattggt gcagcccgcc attgaattca gcataaaaga cagcagtggc
      421 aaacaggttc aaagccacaa aacctatacc ggcacttttg tgttgcagca actgaaaacg
      481 ctggatgcga aaggcaagcc actgatcacg gcggcaaggg ccagctatca aaccgactct
      541 gccaacctgg aagcaaatgg caaatcgttg cacccatcgg cactgggtgt tgaagcccgt
      601 gattttgcct tcaatcccaa cagcaagctg cttcggtttc atatcgattc ggcttacgtg
      661 aaaaacattg cccacaccat cattggtaag aaggaagaca ctcttgaaat gtccgttaaa
      721 gaaatcggca tcaggaacta tccgttcaac atgaaggatt ccattgattg gcgaaaactc
      781 attcataccg ttgcattttg gtccgacggc atggatatca actacaaaac accgcggcag
      841 gtcatcaaag cccggcaggt atatgtaaag ggcaaccaat cgatttcctt cgggcttgac
      901 aactttgcca tccagaacag gaacacccgg gaggaggtgt gggctgccac tccttatgaa
      961 aaaggatatg aaaccatcga agggggtcgc atccgggctt cgggtataca actatcattt
     1021 cctgataaga aaccccaggt atccattgga aaactggcaa cgagtgattt gctttttact
     1081 actgccaaag acaaaacaaa actggaagac actgttgact accggccatt gctcacacaa
     1141 acattgttga aaatacccat tccacttttt attgacagtg tattgctgca aaatgccagg
     1201 gtggatgcgc atgaaataag caagaaaacc aagaaagaaa ccagcatata tttcactgag
     1261 atcaacggct atttgcagaa tgtaaagaac cacaacataa aaccagaaga cacgctggac
     1321 atgcgggtga gggcccggtt ttatggcacc gatgtggtgc gattgcactt ccgccaatca
     1381 tattacgaca ctttgcagga gttctggatg cgggtgcgca tgagccactt tgaaatgccg
     1441 gaaatgaaca aactgctggt gccgcttatg ggattgaata ttctttccgg cactgtagac
     1501 agcttgttgc tggtggcccg tggcaacgac tattttgcct acggcaccat ggacatgcgc
     1561 taccacaacc tgcgggcccg ccttttgaaa acagaagaca ccaaaggcaa agtttgggta
     1621 agcatggcca actttcttac cggcatcttc ctgcgcaaac acgataatgg acgtacggac
     1681 ctgttgttta aagaacggat aagaaagcgt tccattttta atttctgggg caagatcgca
     1741 ttggaaggcc tccttaccaa tctcggcatt aaaagagata aaaaggaacg caaacaattt
     1801 gagaaaacag tgaaagcatt tgatctatca gaaaactact ggcaagatga cgacaattaa
     1861 atacagggac cgtcaaaaac tttggtgcaa aagattaaag gttaccagtt tcctgctggc
     1921 atgcctgctt accctttttt caggcaactt gtgggcacag caggacagct cagtccttgt
     1981 gcaggattcc gccaaaacgt ctggcacagt ggcgctggat acttttgtat acagccatac
     2041 ccgtaagttg gaagctgcca gtaagatctt tgcccgatgg cagtcagcac ttgtcaacat
     2101 tcctgacacc attgcaatca aaaaacaact ggagcagatt gataccaatg taaactccct
     2161 gttgtcaaaa cttcccaata aacagtattt gagcaacctg cgctttttga gagggaacct
     2221 cattcttacc tcgctggcat tgaagcgact ggatgaagcc gaaaaacaac tcaaacgcag
     2281 catagcactg tacctgcaat gcgaccagga agtaaaggaa accggcttcg agcaatcctt
     2341 tgccgccata ccagcatcca acaaaaaaga cagcgcactg gtaaagcagc ataccattat
     2401 cagcaaaacc tggtatgcga tgcggcaaat gtccaatcaa cagatcgccc tgctgaacac
     2461 cttgcagctc aacgtgacca agtcatatat cagaacggag ttttcgcaca ccatggtact
     2521 tgaaggactg aaacagttca ataagaacct gtattccaat cccaagccct tgatcagcac
     2581 accgcgtaat gattccatgt acctggccgc caaagaagaa gccagggtga gcatgtcatt
     2641 catcaaaacc atggtccagg tattctatcg caacaatggc cccaagctga ttttaaacct
     2701 tttcctcttc attgcattcc tggtgatcat tttcaacaat cacaaaatcc tgatgcatga
     2761 aaccaataac cgcagccagg cgttggaaat ggcgcccatg attggtacca aacccattgg
     2821 aacggcgctc tccattggtt ttttcatctc agcgctactt taccaaaaca caccggctgt
     2881 gatcatggaa atcatcatta ccgggcaaat gatcagcatt tccattttgc tgtggcgcag
     2941 ggtaagcaag cagctattct ggcgctggat tgccttgtgt ttgctcttcc ttcgttttgg
     3001 cttcatgaac ctgctggtag gcatatcatg ggaagcacgt tggggcctcg tttctctcaa
     3061 tcttggcagc atttacatca ttctttcttc ttacaaaatc atcaggaaag aaagcaaact
     3121 gattggcaag aactggattg tattggcact ggtggtactt acctccgtgc agcaagcatt
     3181 ggcagttgta ttcaacatca tgggatatcc tgatgccgca ctggtacaat ctgtcaacag
     3241 catattcaac ctcgccatcg ccatcaccat attgctcact atcagaataa tggaagagtt
     3301 tttgaacatg gtggatcttc gtctctataa gcatcaattg ataactgatg aggaagtggg
     3361 gcagttgcgg cagaaagtcc ggggatacct ggtactgctg ggtgttgtca tttgggtact
     3421 ggcttttctc aacacactca attacgacaa gatcatactc gaaaacctgg gtgccttcct
     3481 gaatgaaaaa caaacctttg gcagtgccac ttttacttat gccaacctgc tcaccttcgc
     3541 tttggttttt attgcttcca tttggctgag ccaggtctct tccatcatca tcgatctttt
     3601 ctccacccgc tacatggccg tatccggaga ccagcgcttt aagaacggca aattgttcct
     3661 gcggctcttt atcctggctg ccggcatagt catcgccttc attgcatcag gtatacccgc
     3721 acagcaactc accataatac tgggtgcctt gtcagtaggt attgggttgg gcttgcaaca
     3781 attggtaagc aacctggttt ccgggatcat cattgccata gaaaaaccga taaaggtggg
     3841 agatgtaatt tctattggaa atgcgaccgg cacaatttcc gaagtgggcc tgcgatctac
     3901 catcatgaca ggcaaaaacg gattgaagat ctacgttccc aacggtgaat ttctgtcgat
     3961 gcccttgttc aatcaatcga cactgaaggc ccgaagggct attgccatca acttcctggt
     4021 ttctgaaagc acaccgctgg acaagatgcg gcaattggtg aaagaagcgc tacccgccac
     4081 tcctgaagtg atggaccacc ctccgggaga aattctcctg aacgcctcca ccgaaaaagg
     4141 cttgcaaatg accgtctatt gttggattgc acgaaatgca tctgaatcca cgatcagaag
     4201 tgcagcgtac gacaatattg taactcgttt tcagcaggcg ggcattgagt ttggcagtaa
     4261 cagctatagt tcacgaatga atagtgatga ttgacattgc cgaaaccaat aatgcccgat
     4321 ggcagttggc aagtatgaca gaaacaatat g
//
LOCUS       DATIQF010000308         2492 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_50643, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000308 DATIQF010000000
VERSION     DATIQF010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2492
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50643"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1169)
                     /locus_tag="VLL95_05065"
     CDS             complement(<1..1169)
                     /locus_tag="VLL95_05065"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:NF012796.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HSR38263.1"
                     /translation="MSIQITFPDGAVRSFEAGVTGMDIAKSISEGLARNVLAARVNGE
                     VRDLSRAINEDVSIQFLKWDDTDGKSTFWHSSAHLMAEAIETMFPGVKFWVGPPIENG
                     FYYDIDLGDRKLTEEDLTKLEAKMKELAKQNEVYIRKEISKNEAVQYFAEKGDEYKLD
                     LLQNLEDGQITFYTQGNFTDLCRGPHIPHTGFIKAIKLTNIAGAYWKGDEKNKMLTRV
                     YGITFPNQKELDEYLAMLEEAKKRDHRKLGKELSIFTFDDDVGPGLPLWLPNGATIIE
                     ELEKLAKETEEDAGYQRVVTPHIAKESMYLTSGHLPYYADSMFPAMDMDGERYYLKAM
                     NCPHHHKIFAAEQRSYRDLPLRLAEYGTCYRYEQSGELFGLMRVRCLHMNDAHIY"
     gene            1329..>2492
                     /locus_tag="VLL95_05070"
     CDS             1329..>2492
                     /locus_tag="VLL95_05070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38264.1"
                     /translation="MASLVLTAQDLTGIWRGIFYNEYEMLFYGAKYRYEVQIKTSGLQ
                     AKGVTYSYQATTFYGKASLVGKWTPATNNLTIVENKMLEIKSKGGNDGCLMTCYLRYR
                     KEGEREFLEGTYSAVSAKNDTAQCGGGVVRLEKVQDSDFALEDFLKEPAAAGKSGVKP
                     GQDKYLINKPTPKSTTPGSGSAKTNTPQKPATANTKTPAPKSSSQSPAKKPAPVTPPA
                     TGSSSTAKSNPPKNTNSAAAGSKTPTAPNSKPGTGNAVAKDNPPAQQPAKTNTNPVPA
                     SGTNAKAPVVSNPAPTQASASKTTEAVAKPKPTAPAPPPVLKERKNELVETISTAARK
                     LDITFYDNGEIDGDTITVYANNRLVVSKKGLSAEPITISVALDNDDPIQEIVMV"
BASE COUNT          682 a          635 c          568 g          607 t
ORIGIN      
        1 cagtaaatgt gggcatcgtt catgtgcagg cagcgtaccc tcatcaggcc aaacaattcg
       61 ccactttgct cataacgata gcaggtgcca tactctgcca agcgaagtgg caagtcacgg
      121 tagctgcgct gttcggcggc aaagatcttg tggtgatgcg ggcagttcat ggccttcagg
      181 tagtaacgtt cgccatccat atccatggca gggaacatac tatcggcata gtacggcagg
      241 tggccactgg tgaggtacat gctttccttg gctatgtgtg gagtgaccac tcgctggtag
      301 cctgcatctt cttcagtttc cttcgccagt ttttccagtt cttcaataat ggtggcgcca
      361 ttgggaagcc acaaaggaag tccgggtcct acgtcatcat caaaggtgaa gatgctcaat
      421 tccttgccca gtttgcggtg atcacgcttc ttagcttcct ccagcatggc caggtattca
      481 tccagttcct tctggttggg gaaggtgatg ccgtacacac gggtcagcat cttgttcttc
      541 tcgtcacctt tccaataagc accggcaata ttggtgagct tgatggcttt gatgaaccct
      601 gtatgaggaa tgtgtggtcc cctgcagagg tcagtaaagt tgccttgggt ataaaaagtg
      661 atctgaccgt cttccaggtt ctgaagcagg tcgagcttgt actcatcccc tttttcagcg
      721 aaatactgca ccgcttcatt cttagagatt tccttgcgga tgtacacctc attttgcttt
      781 gccaattctt tcattttggc ttccagcttg gtaaggtctt cctccgtcaa tttgcgatca
      841 cccaaatcaa tgtcataata aaatccattt tcaatgggag gacctaccca aaacttcaca
      901 cccgggaaca tggtctcaat ggcctctgcc atcaggtgtg ccgaactatg ccagaatgtg
      961 ctctttccat ctgtatcatc ccatttcaga aattgaatgg atacatcttc attgattgct
     1021 cttgaaaggt ctcttacctc tccatttaca cgggctgcca gcacatttct ggctagtccc
     1081 tcagagatag atttggcgat atccatcccg gttactccgg cttcaaagga ccttactgcg
     1141 ccatccggga aagtgatctg aatgctcatt attattggtt tctacgtctt ttaaaggcct
     1201 gcaaaattaa caaacaatta ctttccatcg ggcggcaaaa tggacatcgg gtgtaatttt
     1261 atttttcgtt gaggagagac agtctaatgg agaaaatggt tcgcaccctt acaacaacaa
     1321 ttgcctgttt ggcaagcctt gtgcttactg cgcaggactt aacaggtatt tggagaggca
     1381 ttttctacaa cgaatacgag atgctttttt atggtgctaa gtaccgctat gaagtgcaaa
     1441 taaagaccag cggcttgcag gcgaaagggg ttacttattc ataccaggcc actacatttt
     1501 acggcaaggc aagccttgtt ggcaaatgga cacccgccac caataacctt acgatcgttg
     1561 agaacaaaat gctggagata aagagcaagg gagggaatga cggatgcctc atgacctgtt
     1621 acctgcgtta tcgaaaagaa ggcgaacgag agtttttgga aggaacttat agcgcagtca
     1681 gtgcaaaaaa tgatacagca caatgcggtg gaggtgtcgt acgccttgaa aaagtgcagg
     1741 acagtgactt tgcattggaa gattttttga aggaaccagc agcagctggc aaaagcggtg
     1801 tgaaacccgg ccaggataag tacctgatca ataagcccac tcctaaatcc acaacacctg
     1861 gaagtggatc tgccaaaacc aatacaccac aaaaacctgc tactgccaac accaaaaccc
     1921 cggcgccaaa aagttcttcg caaagccccg caaaaaagcc agcgcctgtc acaccaccgg
     1981 ctacaggctc aagcagtact gccaagtcca atccaccaaa aaacacaaac agtgcagctg
     2041 ctggcagcaa aacgcccact gctccaaata gcaaaccagg cacaggaaat gcagtagcca
     2101 aggacaatcc tcctgcgcag caacccgcaa aaactaatac caacccggta ccagcatctg
     2161 gcaccaatgc caaagctccg gttgtcagca atcctgctcc aacgcaggca tctgcatcca
     2221 aaacaacaga agccgttgcc aaacccaagc ctaccgcacc cgctcctcct cctgttctga
     2281 aggagcggaa aaatgagctg gtagaaacta tttccacggc agcgagaaaa ctcgatatta
     2341 ctttttacga caatggcgaa atagatggag ataccatcac cgtatacgct aacaacaggc
     2401 tggtagtttc gaagaaggga ttgtcggcag agcccatcac catttcagta gccctggata
     2461 atgatgaccc catccaggaa attgtaatgg tg
//
LOCUS       DATIQF010000309        11126 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_172042,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000309 DATIQF010000000
VERSION     DATIQF010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 11126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11126
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172042"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..837)
                     /locus_tag="VLL95_05075"
     CDS             complement(<1..837)
                     /locus_tag="VLL95_05075"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HSR38265.1"
                     /translation="MEPKSMAPGMAPTMMPENAHKDIPGNPSTAKSSATKLNDRSNGR
                     PLRVLSEEDWAFWIHNGYIVIKNAVPRQQAADTAAFLWEFEEKKPADPTTWYTAPRAE
                     MKMKELTNTGMVEVYNHQQLWNNRQAPRVYEAFTDIWGTDKLWVTIDRANLNFPMRPG
                     FEYKGFIHWDYDPETKPVNVQGVLALADQTDENMGGFQCIPDLFRTYDTWKLSQPADR
                     DHFKPDTTGFDIVKVKMEAGDLLIFNSLLPHGIRPNLSGDKLRIAQYISMMPAEEDNE
                     PLR"
     gene            complement(932..1810)
                     /locus_tag="VLL95_05080"
     CDS             complement(932..1810)
                     /locus_tag="VLL95_05080"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSR38266.1"
                     /translation="MTTGILKEITSLTQADCFTIYTRVKTDFDFPLHFHEEFEINLIR
                     QGAGTRRVIGDHMETIGEYELVLVGSNLQHAWFTHQCTSPAIVETTIQFHKDLLDEKF
                     LRRNQMAFIRNLLERSARGVLFSEETAKSMAPRIEALTQYHGFDSVLELISILHDLSL
                     ARNTRMLSDSTFNKAEISFNSRRIEKVYEFMNTNFERSIGLSDVAELAGMTEVSLSRF
                     FKKRTGVNFVDALNEIRLGHASRMLIDTTHSIAEIAYKCGFNNISNFNRIFKKKKGCT
                     PKEFKEEYTKNKRLFI"
     gene            2227..3522
                     /locus_tag="VLL95_05085"
     CDS             2227..3522
                     /locus_tag="VLL95_05085"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HSR38267.1"
                     /translation="MKLQLCCYFLVCLIMVHAPVTGQPAASIVSTEKGQLIRNGKPYY
                     FVGANYWYGGVASLGEAGRRRIVSELDFLQRKGVTNLRVLAAAEGRGLINGMRRVEPP
                     YQHPQGVFDESVLEGLDFLLSEMRKRDMTAVLFLTNNWDWSGGFLQYLNWNDLLPDSV
                     MRRKLTWDENRDIVSRFYTCSRCMNALGVQIKKLVGRVNSITGVAYKDDPTIMSWELA
                     NEPRPMRPSAIDAYLEWVKTAATLIRSIDAKHLVTVGSEGEMGSETMAVFEKAHALPQ
                     IDYATIHIWPKNWGWFSDTAIARGMPQIIQNSDSYIQKHVAVMQALGKPLVIEEFGLP
                     RDGHSFSILAPTSLRDNYYASVFAHLLRSAGRGGIVAGCNFWAFGGMGRPAPGRIFWQ
                     PGDDLLGDPPQEEQGLNAVFDQDESTWVLIHSITAALKK"
     gene            3519..4670
                     /locus_tag="VLL95_05090"
     CDS             3519..4670
                     /locus_tag="VLL95_05090"
                     /inference="COORDINATES: protein motif:HMM:NF014237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HSR38268.1"
                     /translation="MTIRIAPIYAMIFWCWCPLPAMAQQLWNASNRNATKETVSLHYS
                     LQHFYAGGQVLLGHQDALAYGVGWRYEPGRSDVLEVTGAYPALYGWELGNLELDSTRN
                     LDGVPFDFMRRAIRQGYDSGAVITLSWHANNPLTGKTAWDPVAGTVKGILPGGDRHVL
                     FLSWLDKIAAFIGSLRGPRGEPIPVLFRPWHELTGNWFWWGQNLCTPSEFRQMWQLTV
                     ERLQIHHQLNNILWVYNTSDFDNAAHFLDRYPGNESVDVISFDSYMYPTKEGDGSQKY
                     SERVGRSLGTLRHLGDSLHKVPALAETGYEAIPESDWFTKIVRPLMKSNPVSYVLFWR
                     NAGKMPDTQKMHFYVPYAGHGSAVDFRNFANNAPMVNGAALQRKKIYTQ"
     gene            4762..6198
                     /locus_tag="VLL95_05095"
     CDS             4762..6198
                     /locus_tag="VLL95_05095"
                     /inference="COORDINATES: protein motif:HMM:TIGR00792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR38269.1"
                     /translation="MSMHDQGNRGQMPPMDQQLKIREKIGYGLGDAASSMYWKIFGMY
                     LLYFYTDVFGIAAAAAGTMFLITRVWDSLFDPVVGVMADRTNSRWGKFRPYLLWVAIP
                     FAVIGVFTFFTPDFSANGKLLYAYLTYSLLMMAYSLINVPYASLLGVMSADGKERTAL
                     SSYRMVFAFGGSLLALWLIEPLVKWFSDNSGPQQGWLLTMVVFGIITTLFFWGCFALT
                     RERVKPLTAQKSPLKDDLKDLLSNKPWWILLCAGVAALIFNSIRDGGAVYYFKYYVER
                     NETGVPKIPLLPTGMSLATLYLLLGQASNVVGVIAATPIANKLGKKTTFAGAMLIASG
                     LSCVFFTAGSGDVYMMLVLQVLISICAGSIFPLLWAMYADIADFSEWQTGRRATGLIF
                     SSSSMSQKFGWTIGGAATGWLLGYYGFKANMEQADATLGGIRLMLSLLPAAGALLSAV
                     AVIFYPLHEKRMMQIAADLEKRRSLSTG"
     gene            6242..7420
                     /locus_tag="VLL95_05100"
     CDS             6242..7420
                     /locus_tag="VLL95_05100"
                     /inference="COORDINATES: protein motif:HMM:NF015971.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosidase"
                     /protein_id="HSR38270.1"
                     /translation="MTEEFLERKSNLFNEHRLYLSQKNSKQPGGNGIIERYVNPVLTA
                     QHTPLKWRYDFDFASNPFLMERIGINAVFNAGAIKWKNKYVLVARVEGADRKSFFAVA
                     ESDNGIDGFRFWNKPVVMPETEEPDTNVYDMRLVAHEDGWLYGLFCTERKDPAAPPGD
                     HSMAVAQCGIARTKDLVNWERLPDLKSPSPQQRNVVLHPEFVNGNYLFYTRPQDGFID
                     AGSGGGIGYGFSESMIPAVVHQEFVLDARQYHTVYEMKNGLGPAPIKTPYGWLHLAHG
                     VRNTAAGLRYVLYLFMTALSNPGVVIHKPDGYFMAPEGDERVGDVSNVLFCNGWVADS
                     DGKVFVYYASSDTRMHVAVSTLDKLCNYVMHTPPDEYRSYATVQHIIDLVDRNERALA
                     "
     gene            7461..8672
                     /locus_tag="VLL95_05105"
     CDS             7461..8672
                     /locus_tag="VLL95_05105"
                     /inference="COORDINATES: protein motif:HMM:NF018877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AGE family epimerase/isomerase"
                     /protein_id="HSR38271.1"
                     /translation="MEKTLHQPPPFWWQALRHQWQQELDSILTFWSTQMTDEVHGGFL
                     GRRMANGQADPLSPKGAVLNARILWTFATAAQLQEREEWRQVAIRAYNELRHRFIDQQ
                     YGGVYWSITCDGLPYQTRKQTYAQAFAIYGFAAYYQLTADPDALKQACALYQLLEQNA
                     ADHKHGGYVEAMDEQWQPLEDMRLSEKDANLPKTMNTHLHVLEAYTLLYKVWPDASLA
                     NAIHSLLLLFLHRILQPETGTQGLFFSMDWQRRDTLVSFGHDIEAAWLLNEAAAVRDD
                     AGLQGEIKNWSLTLVNKACQGIDKDGGMWNEYDLQTNHWVREKHWWPQAEAMVGFCDA
                     WQNTGDLQYLDRCRQSWQFIQHYILQPSLGEWKWGVDAQGSSLENEDLAGFWKCPYHN
                     ARALMELLHRL"
     gene            8753..9457
                     /locus_tag="VLL95_05110"
     CDS             8753..9457
                     /locus_tag="VLL95_05110"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HSR38272.1"
                     /translation="MKRYMTKGKQWGKTAAWLAMALSFSVLTAWINSKPMRVVFFGDS
                     ITQMGVNEGGYIWRMQRNLQQNGKGGEFELIGSGIGGNKVYDLYLRLEEDVLAKEPDV
                     VFVFIGVNDVWHKSSHGTGTDLDKFEKFYKAIIQKLTARQIRPVLVTPAGIGELKGNA
                     NPQDADLNQYSDVVRKLAAQHRLTLVDLRLEWQAYQELHNTGNAEKGVLTTDRVHLND
                     AGNEWVAQAMLKALGQ"
     gene            9939..>11126
                     /locus_tag="VLL95_05115"
     CDS             9939..>11126
                     /locus_tag="VLL95_05115"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HSR38273.1"
                     /translation="MPRKIPWLKRALCILGAILAFGVPVFAQKTITGTVTNPTRKEPI
                     VGASVTVKGSQAGTLTDDAGRFSLSIPQGNVTLVFSAVGFLTKEVAVGDQTTFAVELA
                     EGTNALEEIVVTGYTAQRKKDITGAVSVVNVKDLKAVPSANATAQLQGRASGVTVVEN
                     GVPGAESRVRIRGLGSFNNNNPLYVVDGVQTSSIAGLNPNDIESMQVLKDAASASIYG
                     VRSSNGVIVITTKKGRKKGVNVTYDMYYGTQNPGKGFDLLNATEEAQLLFLARKNSNL
                     PTTGSIYGNGTTPVLPPYIYYSGAPNNGTPITANSPGVNPALYSLDPGRLGDPGYSPY
                     IIVPSSTGTNWYEEITRNAPIMNHNVSLSGMGDASRYMLSLDYFDQDAITQYQFFKRY
                     TARM"
BASE COUNT         2727 a         2559 c         2966 g         2874 t
ORIGIN      
        1 ccgcaggggc tcattatctt cttcggcagg catcatcgaa atatattgag caatgcgcag
       61 cttatcgcca ctcaggttag gccttatgcc atgcggcagc aggctgttga agatgagcag
      121 gtcgccggct tccattttca cttttacaat gtcgaagccg gtggtgtcgg gtttgaagtg
      181 atcgcggtcg gcgggttggc tcagtttcca ggtatcgtag gtgcgaaaca gatcggggat
      241 gcattgaaag ccgcccatgt tttcatcggt ctggtcggcc agggccagca cgccctgcac
      301 gttcacgggt ttggtttcgg ggtcataatc ccagtggatg aagcccttgt attcgaagcc
      361 cggacgcatg gggaaattga ggttggcgcg gtcgatggtc acccagagtt tgtcggtgcc
      421 ccagatatcg gtgaaagcct cgtacacccg gggcgcctgc cggttgttcc acaactgttg
      481 gtggttgtac acttccacca tgccggtgtt ggtgagttct ttcattttca tttcggcccg
      541 gggggcggta taccaggtgg tggggtcggc aggttttttt tcttcaaatt cccaaaggaa
      601 ggccgcggtg tcggctgcct gctggcgggg cacggcattt ttgatgacga tgtagccatt
      661 gtggatccag aaggcccagt cttcttcgct cagcacccga aggggccggc cgttgctgcg
      721 gtcgttcagt ttggtggcac tgcttttggc cgtactgggg ttgcccggaa tatccttgtg
      781 cgcattttcg ggcatcattg tgggcgccat gccaggggcc atgctctttg gttccatact
      841 gcaagcggtt taggtacgga agttattgca aaattgggaa gcgtattcag gcataggaaa
      901 tggattcgca ctgtccgctg attcgaatct attaaatgaa aagtcttttg ttcttagtgt
      961 actcctcttt aaactctttg ggcgtgcatc cttttttctt cttaaagatg cggttgaaat
     1021 tagaaatgtt gttgaacccg catttgtagg caatttctgc tatagaatgg gtggtgtcaa
     1081 tcagcatgcg gctggcatgg cccagcctga tttcattaag ggcatcaaca aagtttaccc
     1141 cagtgcgttt tttgaagaat ctgcttaaag aaacttcggt catgcctgcc agttccgcca
     1201 catcactcaa accaatgctg cgctcaaaat tcgtgttcat gaactcatac actttttcaa
     1261 tccgccggct gttgaaggat atctcagctt tgttgaaggt tgagtcgctt agcattcgcg
     1321 tattgcgagc caatgaaaga tcgtgaagga tggaaataag ttccagcacc gaatcaaacc
     1381 catggtattg cgtaagcgct tcaatgcggg gagccattga tttcgctgtt tcttctgaaa
     1441 acaatacacc ccgtgccgac ctttcaagca ggtttcggat aaatgccatt tggtttcgcc
     1501 gaagaaactt ctcgtccaac aggtctttgt gaaactggat tgtggtttcc actattgccg
     1561 ggcttgtgca ttgatgagtg aaccatgcat gctgtaaatt actgccaacc aataccagtt
     1621 catattcacc gatggtttcc atgtgatcgc ctattaccct gcgtgtgcca gccccttgcc
     1681 ggatgagatt gatctcgaac tcttcatgga agtggagcgg gaagtcaaaa tcggttttca
     1741 cccttgtgta gatggtaaaa caatcagctt gtgtcagcga agtaatttcc tttaggattc
     1801 cggtagtcat ggtgaaaact ggttggcgtc aatcgttgaa tggaggcccg atggtttggc
     1861 aaacattatg aaaaactgtg aggtatggat aggcgttcaa aaatttcagg caaaaaattg
     1921 tatttgcctg gggaaaaaat atcacttctt aggcaaacaa gactcagcaa atgctgcacc
     1981 cggcaataaa aataccagcc ttgggcttcc gaagccgtgt cggaaatgga ttatatacgc
     2041 tggtaaaaag tataaaaagg ggctaaaata gtattaggag agggtagcca tttagagaaa
     2101 tctttgaaga agcaaatcct gaaggtggag caattgcttt cacttgcagc aggttgcgag
     2161 gtcagtaata aggtgaattg tttcatttgc atttgctcct gctttcccca accattttca
     2221 gccattatga aattacaatt gtgttgctac ttccttgttt gcctgattat ggtgcacgcc
     2281 cccgtaacgg ggcagcctgc cgccagcatc gtcagcactg agaagggaca gttgattcgc
     2341 aatggcaagc cttattattt cgttggagcc aactattggt atggaggagt agcctcgctg
     2401 ggtgaagcag ggcgtaggcg cattgtgtcc gaactggact ttctgcagcg caaaggcgtc
     2461 accaatcttc gtgtgctggc tgccgcagaa ggaaggggcc tgatcaatgg aatgcgtcgt
     2521 gtggagccac cctatcagca tccgcaaggt gtattcgatg aatcagttct tgaagggctt
     2581 gattttttgc tgagcgaaat gagaaagagg gatatgactg cagtgctttt cttgaccaac
     2641 aactgggact ggagcggcgg ttttctgcaa tacctgaatt ggaatgacct gctgccggat
     2701 tcagtgatgc gacgaaaact cacctgggac gagaatcgag atattgtcag ccggttttac
     2761 acctgttcac gctgcatgaa cgcgttggga gtgcaaataa aaaagctggt gggtcgggtc
     2821 aacagtatta caggcgtagc ctataaagac gatcccacca ttatgtcgtg ggagttggcc
     2881 aatgagccca ggccaatgcg gccttcagct attgatgctt atttggagtg ggtcaaaact
     2941 gccgcgacat tgatcaggtc aatagatgcc aaacaccttg taacagtagg ctccgagggc
     3001 gaaatgggca gtgagacaat ggcggtattt gaaaaagcac atgcgttgcc acaaattgat
     3061 tatgccacca ttcatatatg gccaaagaac tggggatggt tcagcgatac tgccatcgcc
     3121 aggggcatgc cacagatcat tcaaaattct gacagctata tacaaaaaca tgtggcggtg
     3181 atgcaggcgc ttggcaaacc ccttgtgatt gaggaattcg ggttgccccg cgatggtcat
     3241 agcttcagta tattggcacc cacctccctt cgcgataact actatgcctc ggtatttgcg
     3301 catttgcttc gttcagcagg aaggggaggc attgtggctg gctgcaattt ctgggccttt
     3361 gggggcatgg gccgccctgc tcccggccgt attttctggc aacccgggga tgacttactg
     3421 ggagatcctc cacaagaaga gcaagggctc aatgcagttt ttgaccagga tgaaagcacc
     3481 tgggttttga ttcattctat aacggcggct ttaaaaaaat gacgatcaga atcgctccca
     3541 tttacgcaat gatcttttgg tgttggtgcc cgcttcctgc aatggcccag caactatgga
     3601 atgcctccaa ccgcaatgcc acaaaagaga cggttagtct tcattattct ttgcagcatt
     3661 tttatgcagg cggacaggta ttactcgggc accaggatgc ccttgcctat ggagtaggct
     3721 ggcggtatga acccggtcga agtgacgtgc tggaagtaac cggggcttac cccgccttgt
     3781 atggttggga attgggcaac ctggaactag attcaacccg gaatctcgat ggcgtgcctt
     3841 tcgattttat gcgcagggca atccgtcagg gctacgattc gggcgccgtc ataacgctta
     3901 gctggcatgc caacaaccct ctgaccggaa agaccgcctg ggatcctgtg gcaggtacgg
     3961 tgaagggtat tttgcctggt ggcgacaggc atgttttgtt tctcagctgg ctcgataaga
     4021 tagctgcgtt tattggcagc cttcgcggac cccgtggcga accgattcct gtgttgttca
     4081 ggccgtggca cgagctcacc gggaattggt tctggtgggg acaaaacctg tgcacaccat
     4141 ctgagttcag gcaaatgtgg cagttgactg ttgagcggct tcaaatacac caccagctca
     4201 acaacatcct ctgggtatac aatacgagtg attttgacaa tgccgcccat tttctggatc
     4261 gttatcctgg caatgaaagt gtggatgtca tcagttttga ttcttacatg tatcccacca
     4321 aagagggtga cggttcccaa aaatattcgg agcgggtggg gcgcagcctt ggaacgctgc
     4381 gccatttggg tgattcgttg cacaaagtcc ctgctctcgc cgaaacagga tacgaggcca
     4441 ttccggaatc ggattggttt acaaaaattg taagaccatt gatgaaaagt aaccctgtga
     4501 gttatgtgct gttttggcgc aacgccggga aaatgcccga tacccaaaag atgcattttt
     4561 atgtgcccta cgcaggtcat ggcagtgcgg ttgacttcag gaattttgcc aacaatgccc
     4621 cgatggtgaa tggtgcagca cttcaaagaa aaaaaattta cacccaatga atttagagcc
     4681 ctccttcata agcattatac aggccggtgg tgtctactgc cggcaatttt cttcaccatc
     4741 ctcccttcaa tgctacggat tatgagtatg catgatcaag gaaaccgcgg tcagatgcca
     4801 cccatggacc agcagctaaa aatccgtgag aaaattggct atggtttggg agatgccgct
     4861 tcatccatgt actggaagat ttttggcatg tacctattgt atttctacac tgatgttttt
     4921 ggtatagccg ctgcagccgc gggtaccatg ttcctcatta cgcgggtttg ggattcgctc
     4981 tttgacccgg tagtaggggt gatggcagac agaaccaaca gtcgttgggg taaattcagg
     5041 ccttacttgt tgtgggtggc cattcccttt gctgtcattg gggtatttac atttttcacg
     5101 cctgactttt ccgccaatgg gaaattgctg tatgcctacc tgacctattc gctgctcatg
     5161 atggcttact cgctgatcaa tgtaccctac gcttccttgt tgggcgttat gtcggctgat
     5221 ggcaaagaac gaacagcgct ttcttcctac cggatggtat ttgcttttgg tggcagcctt
     5281 ttggcccttt ggctgataga gccattggtc aaatggtttt cagataatag tggtccccaa
     5341 caaggatggt tgctgaccat ggtggtgttt ggcatcatca ccacgctttt cttctgggga
     5401 tgttttgcgc ttaccaggga aagggtgaag ccattgacag cgcaaaagtc gccattaaaa
     5461 gacgacctga aagatctgtt gtcgaacaag ccgtggtgga ttttgctgtg tgccggcgtt
     5521 gccgcgttga tcttcaatag cattcgcgat gggggagccg tttattattt caagtattat
     5581 gttgaaagaa atgaaaccgg cgttccgaaa atacccttgc tccccacagg tatgtcgttg
     5641 gccacccttt atttgttgtt gggccaggcc agcaatgttg ttggcgtcat tgctgctacc
     5701 cccattgcca acaagctggg taagaaaacc acttttgcgg gggccatgct gatagcctcg
     5761 ggattgagtt gtgttttttt tacggctggc agtggcgatg tatacatgat gttggtattg
     5821 caggtcctca tcagcatttg tgccggcagt attttccctt tgttatgggc tatgtatgcc
     5881 gacattgctg acttcagtga atggcagacg gggaggaggg caaccgggct gattttttca
     5941 tcgtcaagta tgtcgcaaaa atttggctgg accatcggtg gggccgccac gggttggctg
     6001 ttggggtact atggcttcaa agcgaatatg gagcaggccg atgccacgct gggaggtatc
     6061 cggctgatgc tgagcctgct gcctgcggcc ggcgcactgc tttcggccgt ggcagtgatc
     6121 ttttatccgc tccatgaaaa acgaatgatg caaatagcag cagaccttga aaagagaaga
     6181 agcttgagca ccgggtaatt attttgtgcg cctattttat aaaccctata cagcagcaaa
     6241 tatgactgaa gaatttcttg aaagaaaatc gaacctgttc aacgaacacc gcctgtacct
     6301 gtcccaaaaa aatagcaagc aaccgggagg caatggcatt attgagcgat acgttaatcc
     6361 tgtactcacc gcccagcata ctccgttgaa atggcgatat gattttgatt ttgccagcaa
     6421 tccatttttg atggagcgca ttggcatcaa tgccgtattc aatgccggag ccatcaaatg
     6481 gaagaacaag tatgtgctgg tggcccgcgt ggaaggtgca gacagaaagt ctttttttgc
     6541 agtggctgaa agcgataatg gaatcgatgg tttcaggttt tggaacaagc ctgtggtgat
     6601 gcccgaaacg gaagaaccgg ataccaatgt ttacgatatg cgcctggtgg cccatgaaga
     6661 cggatggctc tatggcctct tttgtaccga acgcaaagac cctgctgcgc ctccgggcga
     6721 tcattcgatg gcagtagcgc aatgtggaat tgccagaaca aaggacctgg taaactggga
     6781 gcgtttgcct gatctgaaat caccctcccc gcagcagcgc aatgtggtat tgcacccgga
     6841 gtttgtaaac gggaattatt tattctatac ccggccacag gatggcttca ttgacgctgg
     6901 tagtggcggt ggcattggtt atgggttttc tgaaagcatg attcctgctg tagtgcacca
     6961 ggagtttgtg ctggatgccc ggcagtacca cactgtatat gaaatgaaga atggactggg
     7021 acctgcaccc atcaaaacgc cctatggatg gttgcacctg gcacatggag tacgcaacac
     7081 tgcggccgga ctgcgctatg tactctacct tttcatgact gcactcagca atcctggcgt
     7141 agtgattcat aagcctgacg gttatttcat ggcaccagaa ggagatgaaa gggtaggtga
     7201 tgtgtcgaac gtattgtttt gcaatggctg ggtagcagat agcgatggca aagtttttgt
     7261 ttactatgcc agcagcgaca cccgcatgca tgtagctgtg agtaccctgg acaaactttg
     7321 caattacgtg atgcatactc ccccggatga ataccggtca tatgcaactg tgcagcacat
     7381 tattgatttg gttgatcgca atgaacgtgc actcgcatag ccagcaaatt cgacatgaag
     7441 aaaatggaca agtgaagagg atggaaaaaa cactacatca accaccacct ttttggtggc
     7501 aggcacttcg ccaccaatgg cagcaagaac tggacagcat tcttacgttt tggagcaccc
     7561 aaatgaccga cgaggttcat ggtggttttt tgggtcgacg aatggccaat ggccaggcag
     7621 acccgctttc acccaaaggc gccgttctca atgcccgcat cctttggact tttgctaccg
     7681 cggcgcagct acaggaacgg gaagaatggc gccaggtggc cattcgggct tacaatgaac
     7741 tgcggcaccg gttcattgat cagcaatacg ggggtgtgta ttggagcatt acctgcgacg
     7801 ggctgccgta ccaaacacgc aagcaaacct atgcgcaggc atttgctatc tacggttttg
     7861 cagcgtatta ccaacttacc gcagaccctg atgcactgaa gcaggcatgc gcattgtatc
     7921 agctgctgga gcaaaatgct gctgaccata aacacggtgg gtatgtggaa gcaatggatg
     7981 agcaatggca acctttagag gatatgcgtc tcagtgaaaa ggatgccaac ctgcccaaaa
     8041 ccatgaacac ccaccttcat gtattggagg cctacacgct gttgtacaaa gtgtggcccg
     8101 atgccagcct ggccaacgcc attcactcct tattgttgct gtttctgcat cgcatactgc
     8161 agcctgagac gggtacacaa ggattgtttt ttagtatgga ttggcaacgg agggacaccc
     8221 ttgtttcttt cggacatgat attgaagcag cctggttgct gaacgaggcg gcggctgtgc
     8281 gggatgatgc cggacttcag ggagaaataa aaaattggtc tttaacgctt gtaaataagg
     8341 cctgccaggg tatagacaag gacggaggca tgtggaatga atacgacctg caaacaaatc
     8401 actgggttcg cgaaaagcat tggtggccac aggctgaggc catggttggt ttttgtgatg
     8461 cctggcaaaa caccggcgat ttacagtacc tggatcgttg caggcagtcg tggcagttca
     8521 ttcaacacta tattttgcag ccttcattgg gcgaatggaa atggggagtg gatgcacagg
     8581 gttccagttt ggaaaatgag gacctggcgg gtttttggaa gtgtccttac cataatgcac
     8641 gggcattaat ggaattgttg caccgattgt gaaagtatct gaggcatgag ggcgccaacc
     8701 caaatgatgt ttgtattgct gagagcctta tgttcatcct caattttctg aaatgaaacg
     8761 ctatatgacg aaaggaaaac agtggggaaa gaccgccgcc tggctggcca tggccctatc
     8821 tttcagcgtg cttacggcct ggatcaattc aaagcctatg agagtagttt tttttggtga
     8881 cagcatcact caaatggggg tgaatgaagg cggatacatc tggcgcatgc agcgcaacct
     8941 gcagcaaaat ggcaagggag gggaatttga attgataggt tccggcattg gtggcaacaa
     9001 ggtgtatgac ttatacctgc gcctggaaga ggatgtgttg gccaaagagc ctgatgtggt
     9061 ttttgttttt ataggtgtaa atgatgtgtg gcacaaaagc agccatggta ccggcaccga
     9121 cctggataag ttcgagaaat tttacaaggc cattattcaa aaattgacag ccaggcaaat
     9181 caggcccgtt ttggtcacgc cagcaggcat tggtgagtta aagggcaatg cgaatcccca
     9241 ggatgctgat ctcaaccaat actccgatgt ggttcggaaa ctggcggctc agcaccgact
     9301 tacccttgtg gatttgcgcc tagaatggca ggcctaccag gaactccata ataccggcaa
     9361 tgcggaaaag ggagtactga ctactgacag ggttcacttg aatgatgcgg ggaacgaatg
     9421 ggtggcccag gcaatgctca aagcactggg gcaataggtg aaacgggcgg ttcctgaagc
     9481 aaggcttatt ctccggtaag tcgcatcatt atggaggacg ttcctcttat cctatgcccg
     9541 gtcctgtgcc tgccaattcc cggattttcc tgcttttcac tgccctccca gcgccgttgc
     9601 cctggatttc tcccggcatg ctgttttcaa aactgaatac cccgacagtg aatttccggg
     9661 ctttggaaag ccgggcaacg aagggtatcg cggatgccgg ccggtaacct tttccaagga
     9721 caacaaaaag gctaaaaacc accaaacatt tcagaagcaa tttttatcta gtttttgtat
     9781 ttttttcaca agtttcaggc ctataaaaat gctaagtgat tgaaaatgaa caactaatga
     9841 ataatgtaaa tttttgcact ggaaacgatt gtgggatttt tcagggttga ttttctatta
     9901 ttacacttca attaaaacaa ctacaaaaac aattgcttat gccaagaaaa attccatggc
     9961 tgaagagggc attgtgtatt ctgggagcca ttctcgcatt cggagtacct gttttcgccc
    10021 aaaaaacaat taccggcacg gtaaccaatc caactcgcaa agaacccatc gttggcgcca
    10081 gtgttacggt aaaaggatca caggcaggta cgctgactga tgatgccggc agattcagtc
    10141 tttcaatacc ccagggaaat gtgacgctgg tattttcagc tgttggcttc ctgacgaagg
    10201 aagtagcagt tggcgaccag actacttttg ccgtggaact ggcagagggc accaatgccc
    10261 ttgaagaaat tgtagtgacc ggctatactg cacagcgcaa aaaggacatc accggcgctg
    10321 tatcggtggt aaacgtaaaa gaccttaagg cggttccgtc ggccaatgct actgcccagc
    10381 tgcagggcag ggcctcgggt gtaaccgtgg tggaaaatgg tgttccgggc gccgaatcaa
    10441 gggtacgtat ccgtggcctc ggttcgttta acaacaacaa cccgttgtac gtggtagatg
    10501 gcgttcaaac cagcagcatt gccggtctta acccgaacga tatcgaaagc atgcaggtgc
    10561 tgaaagacgc tgcttccgct tctatttacg gggtgcgcag ctcaaatggc gttatcgtaa
    10621 ttaccactaa aaagggcagg aagaaaggcg ttaatgttac ctacgatatg tactacggaa
    10681 ctcagaatcc tgggaaaggg ttcgacctgc tgaacgccac cgaagaagcc cagttgcttt
    10741 tcctggcccg caaaaacagc aatcttccta ctacaggatc tatttatggc aacggaacga
    10801 cgccggtttt gcctccctac atctattact caggtgctcc caacaacggc accccgatta
    10861 cggccaacag ccctggtgtg aatcctgctt tatacagcct cgatccggga agattgggcg
    10921 accccggcta ttctccttac atcatcgtgc cgtccagcac tggtaccaac tggtatgaag
    10981 agatcacccg caacgcaccg atcatgaacc acaatgtatc gttgagcgga atgggcgatg
    11041 ccagccggta tatgcttagc cttgattact tcgaccagga tgccattacg caataccagt
    11101 tcttcaagcg ttatactgcc cgtatg
//
LOCUS       DATIQF010000310         6404 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_126756,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000310 DATIQF010000000
VERSION     DATIQF010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6404
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126756"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..471
                     /locus_tag="VLL95_05120"
     CDS             <1..471
                     /locus_tag="VLL95_05120"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSR38274.1"
                     /translation="ARLGAFVTKNQALLDAVMKFAQARLSPPSFAQIAGEAAIDLPAD
                     YFEGAKAEYLRRRDLLVRRLNAMEGVYCPNPGGAFYAMAKLPIDDSDRFCQWLLEEFS
                     HNGQTVMLAPATGFYGTPGLGKQEVRLAYVLNLEAIDAAMDCLEAALKVYPGRA"
     gene            1404..1706
                     /gene="ureA"
                     /locus_tag="VLL95_05125"
     CDS             1404..1706
                     /gene="ureA"
                     /locus_tag="VLL95_05125"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit gamma"
                     /protein_id="HSR38275.1"
                     /translation="MHLAPRETEKLMLFLAGELAEKRKARGLKLNYPETIALISSRLH
                     EAARDGKSVATLMEEGATYLSRNDVMEGVPEMIADIQIEATFPDGTKLVTVHNPIR"
     gene            1783..2157
                     /gene="ureB"
                     /locus_tag="VLL95_05130"
     CDS             1783..2157
                     /gene="ureB"
                     /locus_tag="VLL95_05130"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0035550 - urease complex [Evidence IEA];
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit beta"
                     /protein_id="HSR38276.1"
                     /translation="MIPGEYILAKGDIICNAGATVVTIKATNTGDRPIQVGSHYHFFE
                     VNKAVEFDREKAFGMRLNIVAGTAVRFEPGEEKTVELVPFGGSKRIVGFNNLVDGYAA
                     SASAKAAAMEKVNSLNYKNKKS"
     gene            2154..3875
                     /gene="ureC"
                     /locus_tag="VLL95_05135"
     CDS             2154..3875
                     /gene="ureC"
                     /locus_tag="VLL95_05135"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR01792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HSR38277.1"
                     /translation="MSLKVKRDKYVNKFGPTTGDKVRLGDTELFLEIEKDLTIYGEEV
                     KFGGGKTIRDGMSQSATATRDQGVLDFVITSVMIVDHWGIIKADVGIKDGKIVGIGKA
                     GNPDTSDGITPGMTIGASTEVHGGAGLIMTAGAIDTHIHYICPQQVEHALYSGTTTMI
                     GGGTGPADGTHATTVTAGAWFIQKMMEAAESLPMNFGFFGKANCSTEAPLIEQIEAGA
                     CGLKIHEDWGSTMAAIDCSLTVADKYDIQIAIHTDTLNEAGFLEDTVRAIGGRVIHSF
                     HTEGAGGGHAPDIIKISMYPNILPASTNPTRPYTVNTVAEHLDMLMVCHHLSKSIPED
                     VAFADSRIRPETIAAEDILQDMGVFSMMSSDSQAMGRIGEVITRTWQTAHKMKVQRGP
                     LPEDKDTGNDNYRIKRYVSKYTINPAIAQGISEYVGSIELGKMADLVLWKPSLFGVKP
                     EIIIKGGMIIAAKMGDPNASIPTPQPVYYRPMFGAHGKALHKTCATFVSQVSLDKGIV
                     QGYGLERIVLPVKNCRNIGKKDLIHNDATPNIEVNPENYKVTVNGEHITCEPMKELPL
                     AQRYFLF"
     gene            3947..4450
                     /locus_tag="VLL95_05140"
     CDS             3947..4450
                     /locus_tag="VLL95_05140"
                     /inference="COORDINATES: protein motif:HMM:NF017045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreE"
                     /protein_id="HSR38278.1"
                     /translation="MMIKEKIGNVNSFPVENRTIDYLLLDWFETGKRILHKKTTSGQE
                     VVMKFLGENQQLTQGDILFADDSRLIVVAIKPCDALVIKPRSTFEVASLCYEIGNKHL
                     PLFYQDNDLLVAYDAPLYRLLVSSGYELNRQEATLLNPLKTTVSPHGNGGQDSLFSKI
                     MKLTSAD"
     gene            4447..5133
                     /locus_tag="VLL95_05145"
     CDS             4447..5133
                     /locus_tag="VLL95_05145"
                     /inference="COORDINATES: protein motif:HMM:NF013858.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreF"
                     /protein_id="HSR38279.1"
                     /translation="MKNSLFHLLHLTDPTLPIGGYSHSAGLETYVQNGRVKDASTAKN
                     FISEMLSRNIQFTDAALVSLAYDAAGRGDLKTLVELDQECSAVKLPMEMRQASLKLGM
                     RLLKIFQPMLQNEMGDQYRKLVQEKKAEGHYCIVFGMIASLLNISKEDALHGFLYNAA
                     VGFVTNSVKLIPLSQLTGQEILFSLQPLIEELTAKAMEPDKDLIVLCCTGFDILCMQH
                     EQLYSRLYMS"
     gene            5152..5787
                     /gene="ureG"
                     /locus_tag="VLL95_05150"
     CDS             5152..5787
                     /gene="ureG"
                     /locus_tag="VLL95_05150"
                     /inference="COORDINATES: protein motif:HMM:TIGR00101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreG"
                     /protein_id="HSR38280.1"
                     /translation="MERKYVKIGVAGPVGSGKTAIIERLTRHMMKDYSLGVITNDIYT
                     REDAEFLTKNSLLPAERIIGVETGGCPHTAIREDASMNLEAVEEMAERIPDADLIFIE
                     SGGDNLSATFSPDLADLTIFVIDVAEGEKIPRKGGPGITRSDLLVINKIDLAPYVGAD
                     LSIMEADARRMRKGSPFVFTNLMTLQGLDSVIGWIKKYALMEEIEEPKLWR"
     gene            5784..>6404
                     /locus_tag="VLL95_05155"
     CDS             5784..>6404
                     /locus_tag="VLL95_05155"
                     /inference="COORDINATES: protein motif:HMM:NF013899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreD"
                     /protein_id="HSR38281.1"
                     /translation="MISDLHIITSLRGAVTYLKKLYFTAPFKVADVTINKRERQLHLT
                     LMSSSPGILDTDEYRLKIELESGCAVRLYTQAYQRLFTMKNSAKQHVDFHLGKNSSLY
                     FIPHPVVPHVNSNYSARNRIYLSDNCCLIFGEILTCGRKMNGELFKFSRFHNLTEVFM
                     NDKLVIRENLLIEPSRIDMGAIGQLEGFTHQASMIYLHPDADPASLC"
BASE COUNT         1687 a         1593 c         1541 g         1583 t
ORIGIN      
        1 gcccgcctcg gggcctttgt gaccaagaac caggccttgc tggacgcggt gatgaagttt
       61 gcccaggccc gcctgagccc gcccagcttt gcgcagatcg ccggcgaagc cgccatcgac
      121 ctacctgctg attattttga aggcgccaaa gccgaatacc tgcgcaggcg tgacttgctg
      181 gtgcgccgcc tcaatgccat ggaaggcgtg tactgcccca acccgggtgg cgctttctat
      241 gccatggcca aactgcccat cgacgacagc gatagattct gccaatggct gctcgaggag
      301 ttcagccaca acgggcaaac cgtgatgctg gcgccagcca ccggctttta tggcaccccc
      361 ggcctgggca agcaggaagt gcgcctggcc tatgtgctca acctcgaagc catcgatgcc
      421 gccatggatt gcctggaagc agctctcaaa gtgtatcctg gcagggcata atcaaagtgc
      481 ttttgcatgg caatatataa gccctccccg gagggctttt gtcgttggtg aagaaacatg
      541 gctttgctct tcattcgctg cgtcggaaat cttttcaggt acctcctgga accgtgcacc
      601 tgtactcttg gatcatggtg gggtttctgc agctttttct tggatttgaa tgcgctaagg
      661 gttagggtag ctgcaagcaa aggccggtga gagagggcta ttgctccttt tgtcattgca
      721 gcaatgcagc ttccaggaat gaacaagttc gatagagggt tggctggcat tttttcattg
      781 gaacaggcca gaatattcac ctgcagtggt gacaatatcc tgcagacctt tgaattcctt
      841 ctgtggtaag ttccccttca ggcccgtttc aataaaccca aatccgggcc gcaatttcga
      901 atgcgggcaa ttgccagctg aatggcaaat ccggctgccc aatatttccg ccttttatcc
      961 agccaggaga ataccatgga attcttcagc aaatagggct acgtgtcctt ttgttcacta
     1021 tattactgtc ccaattatcg atttgtcatt tccagattct ctttaattcc ctaataccaa
     1081 acctgcttca ttttcataca aatgatttca ccttcacaag tttttgaact aaattagtgt
     1141 cccctgtttt tgtgcgtttc gtcctatgtt gtgtcgaccg cccaaagccc ggctaatttt
     1201 taagtcactc atctaaacca acacctcttg ccatgaaaag atcatttgct ccgacttagc
     1261 tgtttttggt ggcggaggtt tttttcctcc tgtggaccgg tgttttcgcc ggcagttgca
     1321 gatgaatcct gcgagcattt gctgccattg gtcctttcca aaagtttatt atccgttccc
     1381 atcattttta aaatagatac catatgcatc tagcacctcg agaaaccgaa aaactcatgc
     1441 ttttccttgc aggagaactg gccgaaaagc gaaaagcaag ggggttgaaa ttgaattacc
     1501 ccgaaaccat tgccctcatc agcagcaggc tgcacgaagc ggcccgcgat ggcaagtctg
     1561 tagcaacgct catggaagag ggcgccacct atctttcccg aaacgacgtt atggagggcg
     1621 ttcctgaaat gattgccgac atccaaattg aagccacctt cccggatgga accaaactgg
     1681 ttaccgttca caatccgatc cgttgatcct aaatccaatg cgcatggacc aattactgga
     1741 gaccatgtga ttgattttca ttaatcctca aaataacaca acatgattcc tggagaatat
     1801 attcttgcaa agggagatat aatatgcaat gccggcgcca cggtcgttac tattaaggcc
     1861 actaatacag gcgaccgccc catacaggta ggctcccact accatttttt cgaagtcaat
     1921 aaagccgtgg agtttgatcg ggaaaaagct tttggaatgc gcctcaatat tgttgctggc
     1981 acggcagtcc gctttgaacc cggcgaagag aaaactgtag aactggttcc atttggcgga
     2041 tctaagcgca tcgttgggtt taataacctg gtggacggtt atgctgcttc tgccagtgcc
     2101 aaagccgccg ccatggaaaa agtgaattcc ctcaactaca aaaacaagaa atcatgagct
     2161 tgaaagtaaa acgcgataaa tacgtaaaca aattcggacc caccaccggt gataaggtgc
     2221 gcttgggcga taccgaatta ttcctggaga tcgaaaagga cttgacgatc tatggggaag
     2281 aagtaaaatt tggcggcggc aaaaccattc gcgatggtat gagccaatca gccactgcca
     2341 cccgcgacca gggcgtgctg gattttgtga ttaccagcgt gatgatcgtt gaccactggg
     2401 gcatcatcaa agccgacgtg ggtataaaag atggtaagat tgttggcata ggcaaagccg
     2461 ggaaccccga caccagtgat ggtatcacgc ccggtatgac aatcggcgct tctacagaag
     2521 tgcatggagg tgctggtttg atcatgaccg caggcgccat cgatacgcat attcactata
     2581 tctgtccaca gcaggtagaa catgcgctgt acagtggaac aaccaccatg attggtggtg
     2641 gtacaggacc tgcagatggc acccatgcca ccactgtcac agccggtgcc tggtttattc
     2701 aaaaaatgat ggaagcagcc gaatcgctgc ctatgaactt cggtttcttt ggcaaggcca
     2761 actgctccac cgaagcgccg ctcattgagc agattgaagc aggtgcctgt ggtttgaaga
     2821 tccacgaaga ctggggttcc accatggcag ccatcgactg ttcattgacc gtagctgata
     2881 aatatgatat ccagatcgcc attcacaccg atacactcaa tgaagcgggc ttccttgaag
     2941 atactgttcg ggccattggc ggaagggtga tccactcttt ccatactgag ggtgcaggtg
     3001 gtggtcacgc tcctgacatc atcaagattt ccatgtatcc caacatcctg ccagcctcta
     3061 ccaaccccac ccgtccatat acggtgaata cggtggctga gcacctcgac atgttgatgg
     3121 tttgtcacca cctcagcaaa tccattcctg aagacgtggc ttttgccgac agccggatcc
     3181 gtccggaaac cattgcggca gaagacatct tgcaggacat gggcgtattc agcatgatga
     3241 gtagcgacag ccaagccatg ggacgtattg gcgaagtaat cacccgcacc tggcagactg
     3301 cacacaaaat gaaagtgcag cgcggtcctc ttcctgaaga caaggacact ggcaacgaca
     3361 actacaggat caaaaggtat gtttccaagt ataccatcaa cccggccatt gcgcagggca
     3421 tttcagagta tgtaggttct atcgaacttg gcaaaatggc cgacctggtg ctgtggaaac
     3481 cctctctctt tggtgtgaag ccggaaatca tcatcaaagg cggtatgatc atcgccgcca
     3541 agatgggaga tcccaatgcc tctattccta cgccgcagcc ggtttattat cgcccaatgt
     3601 ttggtgcaca tggcaaagcc cttcataaga cctgcgccac ctttgtttcc caggtatctc
     3661 ttgataaggg aatcgtacaa ggatacggtc ttgagcgaat agttttgcca gtgaaaaact
     3721 gccgcaatat tggcaagaaa gacctcatcc acaacgatgc tactcctaac attgaagtga
     3781 atccggaaaa ctataaggta accgtcaatg gcgaacacat cacctgtgaa cccatgaagg
     3841 aactgccact tgcccagcgt tacttcttgt tctaacaacc tcaataagca ggtaaacctg
     3901 aatcaacaac caatcaagca acaaaagatc cagtttcagc acaattatga tgataaaaga
     3961 aaagatcggg aacgtcaaca gctttccggt agagaacagg acgatagatt atttgttgct
     4021 tgattggttt gaaacgggca aacgaatact tcataaaaaa accacctccg gccaggaggt
     4081 ggttatgaag tttcttggcg agaatcagca gctcacacag ggcgatattc tttttgcgga
     4141 tgacagccga ctgattgttg tcgccattaa accttgtgat gccctcgtta tcaagccaag
     4201 atccactttt gaagtggctt ctctctgtta tgagattggc aataagcacc tccccctgtt
     4261 ttaccaggat aacgatttgc tggtggccta tgatgcaccg ttataccgat tgctggtgtc
     4321 gtcggggtat gagctgaaca ggcaagaagc cacactgttg aatccactaa agactacggt
     4381 gtctccccat ggaaatggtg gccaggacag ccttttttct aaaatcatga aattaacctc
     4441 agccgattga aaaattcact attccatttg ttgcatctta ccgatccaac acttccgatt
     4501 ggtggttatt ctcactcagc cggactggaa acctatgttc agaacggaag ggtgaaggat
     4561 gcttccaccg caaagaattt tatttcggaa atgctcagcc gaaatataca gtttaccgat
     4621 gcggccctgg tgtcgctggc ctatgatgct gccggacgtg gcgacctgaa aacgctggtc
     4681 gaactagacc aggagtgcag tgctgtaaag ctccccatgg aaatgcgaca ggcgagtctc
     4741 aaactgggca tgcgtctttt gaaaatattc cagcccatgc ttcagaatga gatgggcgat
     4801 caataccgaa aactggtgca ggaaaaaaag gcggaaggcc actactgtat tgtatttgga
     4861 atgatcgcat cgctgctgaa tatttccaaa gaagatgcgc tgcatgggtt tttgtacaat
     4921 gccgctgttg gctttgttac caacagcgtc aagctgatcc ctcttagtca gctcaccggg
     4981 caggaaatac tgttttccct gcagccgctg attgaagaac tgacggcaaa agccatggaa
     5041 cccgacaagg atctcatcgt gctgtgttgc acaggcttcg atattctctg tatgcagcac
     5101 gagcaattgt attccagatt atatatgtca taaccaaacc aaccaaatac tatggaaaga
     5161 aagtatgtta agataggtgt ggccggtcct gtgggttccg gcaaaaccgc aattattgaa
     5221 agactgacaa ggcacatgat gaaagactac agtcttggtg tgatcactaa cgacatttat
     5281 acccgggaag atgcggaatt cttaacgaag aacagcctgc tccccgcaga aaggatcatc
     5341 ggcgttgaaa ccggaggctg tccgcatacc gccatccgtg aagatgccag tatgaacctc
     5401 gaagctgtgg aagaaatggc cgaacgtatt cctgatgcgg acctcatatt catcgaaagc
     5461 ggcggtgata atttgtcggc aacgttcagt cccgacctcg ccgatttgac catttttgta
     5521 attgatgtgg cggaaggcga aaaaattccc cgcaaaggtg gtcctggcat tacacgcagt
     5581 gatttgctgg tgatcaataa gattgacctg gctccttatg tgggcgctga cttgtccatt
     5641 atggaagctg atgcccgaag gatgcgcaaa ggaagtccct tcgtatttac taacctgatg
     5701 actctacaag gcctggactc cgttatcgga tggatcaaga aatatgccct gatggaagaa
     5761 atcgaagaac ccaaactttg gagatgatca gtgacctgca tatcataaca tcccttaggg
     5821 gagccgtgac ttacctgaag aagttgtatt tcaccgcgcc atttaaggtg gccgatgtaa
     5881 ccatcaacaa acgtgaacgt cagcttcacc tgacattgat gagttcttct ccgggtattc
     5941 tggataccga cgaataccgc ctgaaaatcg aactggaaag cggatgtgcg gtgcggctgt
     6001 atacccaggc ataccagcgc ctttttacaa tgaaaaacag cgccaagcaa cacgtggatt
     6061 tccacctggg gaaaaacagc agtctctact tcattccgca tcctgttgtg cctcatgtca
     6121 attcaaacta ttcagccagg aaccggattt atttatccga caattgctgc ctcatcttcg
     6181 gtgagatatt gacttgtgga aggaaaatga atggcgagct gttcaagttt tcccgctttc
     6241 acaacctcac tgaagttttc atgaatgaca agctcgtaat tcgtgagaac cttctcatcg
     6301 agccttcccg tattgatatg ggcgctatag gtcaactgga aggatttacc caccaggcca
     6361 gtatgatcta tttgcatccg gacgccgacc ctgccagttt gtgt
//
LOCUS       DATIQF010000311         2070 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_80955, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000311 DATIQF010000000
VERSION     DATIQF010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2070
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80955"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(186..>2070)
                     /locus_tag="VLL95_05160"
     CDS             complement(186..>2070)
                     /locus_tag="VLL95_05160"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HSR38282.1"
                     /translation="PLFIKDNNIFLRSAAGDKQLTFDAAPEKNPTFSPDEKFVAFTRN
                     NDLYTVEVATGKETRLTTDGTDLILNGYASWVYWEEIFGRPTAFRAFWWSPDSKTLAY
                     MRFDQSRIKMFPLYNADGTHGSLEETRYPKAGDPNPDVKLGFVQASGGATTWVDFNSA
                     VDHQLGWPEWKPDGSALYVQWQNRGQDSLRLFAVNPKDASKKEVYFETQKALVSLDEA
                     DDRLTFINGGADMIIMSDKSGWKHYSVYSSDGVFKNNITSGNYTVQEVLGLDEKTKTL
                     YIRVRGKDGFARSDVYSVSLDGKKMTRLTFGNYNHSRFSFSPSYKYLITSYNSITDPG
                     GMAIVDNKGKLVRELGKVQGAAMSNFAMAKTELIFIKSADGKYDLPAVVTWPMNFDPT
                     KKYPMLVNVYGGPDASQVTDAWQWNGQRQWYAQEGLLQVTFDNRASGHFGKAAIAEIH
                     RQLGILEIEDFKTMAKYFIEKGYADPAKVCITGFSFGGYMSCMALTYASDVFTHGMAG
                     GSVTDWHLYDSHYTERFMDTPGENPDGYKKTSVMQYVDRYKGMLQIVHGTMDDNVHMQ
                     NSIQLIGAMQDKGKDFEFMLYPNGRHGWRNLPARNAHFDNLKTKFIYKHLLEKEVPKE
                     ILR"
BASE COUNT          443 a          521 c          546 g          560 t
ORIGIN      
        1 ccaacagcac cagcagagaa aagatcaaac tgccgatcaa cccccgaacc ggtcttcctg
       61 gtgagtggcc tgccaagcgc agccccacac gtaagggtgg tgtggaatga ttccttaaat
      121 aaaagcaact gtgcaaaaaa caaaagcctt ccatttccgg aaggcttttg ttttttaggg
      181 aatgcctagc gcagtatctc tttcggcact tctttttcaa gcaggtgctt gtaaatgaat
      241 ttcgttttga ggttgtcgaa gtgggcgttt ctcgctggca ggtttctcca accatggcgg
      301 ccgttgggat agagcatgaa ttcgaagtcc tttcctttgt cctgcatagc accaatcagt
      361 tgaatgctgt tttgcatgtg cacgttgtca tccatagtac cgtgtacaat ttgcagcatg
      421 cctttgtagc gatctacata ttgcatcacg ctggtctttt tgtagccgtc ggggttttcg
      481 cccggtgtat ccatgaagcg ctctgtgtag tggctgtcgt acaagtgcca gtcggtaacg
      541 ctgccgcctg ccatgccatg cgtgaacaca tccgatgcat aagtgagtgc catgcaactc
      601 atgtagccgc caaagctgaa accggtgatg caaactttgg caggatcggc atatcccttt
      661 tcgatgaagt actttgccat ggtcttgaaa tcttcgatct ccaaaatgcc gagctggcga
      721 tggatttcgg cgatagcagc ttttccaaaa tgaccactgg cgcggttgtc gaaggttacc
      781 tgcaagagtc cttcctgtgc ataccactgg cgttggccat tccactgcca ggcatcggtt
      841 acctgcgagg catcgggacc gccatacaca tttaccagca tggggtattt tttggtagga
      901 tcaaaattca tgggccaggt caccacggca ggcaggtcgt atttgccatc ggcgctcttg
      961 atgaaaatga gttcggtttt ggccatcgca aagttgctca tggcggcacc ctgtactttg
     1021 cccagttcac gcaccagctt tcctttgttg tcaacaatgg ccataccacc cggatcggtg
     1081 atgctgttgt aagaagtgat taggtatttg taactcggtg agaagctgaa acgactgtgg
     1141 ttataattgc cgaaagtgag gcgggtcatt ttcttgccat caaggctcac actgtataca
     1201 tcgctcctgg caaaaccgtc tttgccacga acacggatgt acagcgtctt tgttttttca
     1261 tccaacccca gcacttcctg tacggtgtag ttgccgctgg tgatgttgtt tttgaaaaca
     1321 ccatcgctgc tgtaaacact gtaatgtttc cagccgctct tgtcgctcat aatgatcatg
     1381 tcggcgccgc cattgatgaa ggtgaggcgg tcatccgctt cgtcaagact aaccaaggct
     1441 ttttgtgttt cgaaatacac ttcttttttt gaagcatcct ttgggttcac agcaaacagg
     1501 cgcaggctgt cctgtccgcg gttttgccat tgtacataca gggcgctgcc atcgggtttc
     1561 cattcgggcc agcccagttg atgatcgaca gcgctgttga aatcaaccca ggtggtggcg
     1621 ccaccactgg cttgcacaaa gcccagtttc acatcagggt tggggtcgcc ggctttgggg
     1681 tagcgggttt cttcgaggct gccatgggtg ccgtcggcat tgtacagcgg gaacattttg
     1741 atgcggctct ggtcaaaccg catgtatgcc agcgtcttgc tgtcggggct ccaccagaaa
     1801 gcacggaaag ccgtggggcg gccaaagatc tcttcccagt acacccagct ggcatagccg
     1861 ttcaggatca ggtctgtgcc gtcagtggtc aggcgggttt ccttgcccgt agctacctct
     1921 accgtgtaga gatcgttgtt gcgggtgaag gctacgaatt tttcatcggg gctgaaggtg
     1981 gggttctttt caggcgccgc atcaaaagtc agttgcttgt cgccggcagc actgcgcagg
     2041 aaaatattgt tgtctttaat gaacaaaggc
//
LOCUS       DATIQF010000312         1546 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_202769,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000312 DATIQF010000000
VERSION     DATIQF010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1546
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202769"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(350..769)
                     /gene="iscU"
                     /locus_tag="VLL95_05165"
     CDS             complement(350..769)
                     /gene="iscU"
                     /locus_tag="VLL95_05165"
                     /inference="COORDINATES: protein motif:HMM:NF013738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HSR38283.1"
                     /translation="MAYSEKVIDHYQNPKNVGTLDKSKKNVGTGLVGAPECGDVMRLQ
                     IEVDDNTGLITDAKFKTFGCGSAIASSSLATEWLKGKSVDEALKIDNMEIVEELNLPP
                     VKIHCSVLAEDAIKAAINDYRVKNGMEALKFDESVVH"
     gene            complement(869..>1546)
                     /locus_tag="VLL95_05170"
     CDS             complement(869..>1546)
                     /locus_tag="VLL95_05170"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HSR38284.1"
                     /translation="VQAVGKIPVDVKADGIDIMAFTAHKMYGPKGVGALYVRRKNPRV
                     KVTAQMDGGGHERGMRSGTLNVPGIVVFGKACELARLEMEKDAAHTSRLRDKLEQALM
                     KIEEAYVNGDPAHRLPHVSNISFKYVEGEGLMMGFNKNIAVSSGSACTSASLEPSYVL
                     KALGLGDDLAHSSLRFGLSRFTTEEQIDYTIEHVTNTVLKLREMSPLWEMYKEGIDLN
                     TIEWAHH"
BASE COUNT          343 a          408 c          362 g          433 t
ORIGIN      
        1 ctcgttgtcg aaatccattt tgtaggtgag gccgctgcag ccaccgccca ctacgctaac
       61 ccgaaggaaa tagctggggt cgctgccaat accggcttct gccatcaggg catccacttt
      121 cttttttgcc ttgtcgctta cagttattgc attatctagt gctacgctca tgagttgctc
      181 ctttgtgaaa cagtgatgat caaattccgt tccggcgcaa aattactgcc aatttgtacg
      241 tacaaatttg gtttaacgaa tggttccgca tttcaaaacc cggattccct aaaacgcaaa
      301 acagccggaa aggctgcttt gcgatattga ttactccgtg tgaaacgggt tagtgaacaa
      361 cgctttcatc gaacttcagc gcttccatgc cattcttaac gcggtaatca ttgatagccg
      421 ctttgatggc atcttcagcc aataccgagc agtggatctt caccgggggc aggttcagtt
      481 cttccacgat ctccatgttg tcaatcttca gggcctcatc tactgatttg cctttcagcc
      541 attcagtagc cagactgctg gaagcaatgg cagaaccgca tccaaaggtt ttgaatttgg
      601 catcggtgat aagaccggta ttgtcatcca cctcaatttg caagcgcatt acatcgccgc
      661 attcaggggc gcctaccagg ccggtgccta cattcttttt gcttttgtcc agggtgccca
      721 cattcttggg gttctggtag tgatcgatta ctttttcaga gtatgccatg gttaagtacg
      781 atttacgaag ttagaagtac gaagtaatta gcatcatacc gatggaagag gtcacttcgt
      841 acttcaaacc tcgtccttcg tatttgtttt agtggtgtgc ccactcaatg gtgttgaggt
      901 caataccttc tttgtacatc tcccacaacg ggctcatttc acgcaacttg agtactgtgt
      961 tcgttacatg ctcgatggtg tagtcaattt gctcttcggt ggtaaagcgg ctgaggccaa
     1021 aacgcagtga agagtgcgcc aggtcatcac ccagtcccaa tgccttcaac acatagctgg
     1081 gctcaaggct ggcactggtg caggcagaac ctgagctcac cgcgatgttc ttgttgaagc
     1141 ccatcatcag gccttcccct tccacgtact taaagctgat gttgcttaca tgtggcaggc
     1201 gatgagccgg gtcaccgttc acataagctt cttctatttt catgagtgcc tgctccagct
     1261 tgtcgcgaag acggctggta tgagcggcat ctttctccat ttccaggcgg gccagttcgc
     1321 aggctttacc aaaaactaca atgccaggca cgttgagcgt accgctgcgc atgccacgtt
     1381 cgtggccgcc accgtccatt tgggcggtca cttttacgcg ggggtttttg cgacgcacat
     1441 acaaagcgcc aacacctttg gggccataca ttttatgggc tgtgaatgcc atgatgtcaa
     1501 tgccatccgc tttcacatcc actggaattt tgcccactgc ctgcac
//
LOCUS       DATIQF010000313         1773 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_217919,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000313 DATIQF010000000
VERSION     DATIQF010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217919"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..382
                     /locus_tag="VLL95_05175"
     CDS             <1..382
                     /locus_tag="VLL95_05175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38285.1"
                     /translation="VAGGVLLDLVAFYGTGSLDGTTKQQEFFGKGGFTSIGVADDVKS
                     FAPGYFSCVFHLLFVLCRLWRLLFWPDGMPAEACCIGYNMLQAFHIKGRENTEVALKD
                     NAKAKTFENHQGLSTVTFGTMSYS"
     gene            395..>1773
                     /locus_tag="VLL95_05180"
     CDS             395..>1773
                     /locus_tag="VLL95_05180"
                     /EC_number="4.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HSR38286.1"
                     /translation="MLDLEKHGHLVRIKEEVDPHLEMAAIHLRMYEAQGPALLFENVK
                     GSRYRAASNIFGTLDRSKFIFRDTLALVQQMVQLKNDPVKAIKSPIKNFGAGLAAIKA
                     LPLKNPLSKPVMADEIRISDLPLIRHWPMDGGAFVTLPQVYTEDIDQPGIMKANLGMY
                     RIQLNGNDYATDKEIGLHYQLHRGIGVHQTKANKKGQPLKVSCFVGGPPSHTVAAVMP
                     LPEGLSEMTFAGVLGGRRFRYTYEDGFAVSTDADFVITGEVYPGENKPEGPFGDHLGY
                     YSLTHPFPLMRVHKVYARKNAIWPFTVVGRPPQEDTSFGQLIHEMTGDAIPQEIPGVK
                     EVHAVDAAGVHPLLLAIGSERYTPYMPAKQPAELLTIANHILGTGQLSLAKFLFITAD
                     ETNQLHTHDVQAFMHYLLERIDLTRDVHFYTNTTIDTLDYSGTGLNSGSKVVLAAYGE
                     KLRELATEVP"
BASE COUNT          446 a          459 c          459 g          409 t
ORIGIN      
        1 agtcgctggt ggcgtgcttc ttgatcttgt tgctttttac ggcaccggca gtttggatgg
       61 caccaccaaa caacaagagt ttttcggtaa gggtggtttt accagcatcg gggtggctga
      121 tgatgtcaaa agttttgcgc ctggatattt cagttgcgta tttcatctgt tatttgttct
      181 ttgccgcctt tggcggctgc tattttggcc agatggaatg cctgctgaag cttgttgcat
      241 agggtacaac atgctgcagg catttcatat taagggccgc gaaaataccg aagtagcgct
      301 aaaggataat gctaaagcaa aaacctttga aaaccaccaa ggcctttcaa ctgttacctt
      361 tggcactatg tcgtactcgt agctggaagc ctgtttgctc gaccttgaaa aacacggtca
      421 tctcgttcgc atcaaagaag aagtagatcc ccacctggaa atggcggcca ttcacctacg
      481 gatgtatgag gcccaggggc cggccctgtt gttcgaaaac gtaaaaggct cccgataccg
      541 ggcggcgtcc aacattttcg gtacactgga cagaagcaaa tttatatttc gagatacact
      601 ggccctggtg cagcaaatgg tgcagttgaa aaacgacccg gtaaaagcga tcaaatcgcc
      661 gatcaaaaac tttggcgccg gcctggccgc catcaaagcg ttgccgctta aaaatccact
      721 gagcaagccg gtaatggctg atgagatccg catttccgac cttccattga tcaggcactg
      781 gcccatggat ggcggcgcct ttgtaacgct gccacaggtg tatacagagg acattgacca
      841 acccggcatc atgaaggcca acctgggcat gtaccgcatt cagctcaacg gaaatgatta
      901 cgcgaccgat aaagaaatag gcctgcacta ccaattgcat cgtggcattg gggtgcacca
      961 aaccaaggcc aacaaaaaag gccagccgct gaaagtgagt tgctttgtgg gtggccctcc
     1021 ctcgcatacc gttgctgccg taatgccatt gcccgaggga ttaagtgaaa tgacttttgc
     1081 cggtgtattg ggtggccgaa gattccgcta tacctacgag gatggttttg ccgtcagcac
     1141 cgatgctgat tttgtgataa caggggaagt gtaccccggc gaaaacaaac ctgagggacc
     1201 gtttggtgac cacctcggtt attacagcct cacgcatccc ttcccgctga tgcgggtgca
     1261 caaagtgtat gcaaggaaaa atgccatctg gcctttcaca gtggtaggaa ggcctccgca
     1321 ggaagacacc agttttggcc agctcatcca cgaaatgacc ggcgatgcca tcccgcagga
     1381 aatccccggc gtgaaagaag tgcatgcggt ggatgcggcc ggtgtacacc cgttattgct
     1441 ggccattggc agcgaacgct acacgcccta tatgcctgcc aaacagccgg cggagttgct
     1501 caccatcgca aatcacattt tgggtaccgg gcagttgagc ctcgccaaat tcttgttcat
     1561 taccgcagat gaaaccaacc aactgcatac acatgatgta caggccttca tgcattacct
     1621 gctcgaaaga atcgacctga cccgtgatgt gcatttttat accaacacca ctattgatac
     1681 gcttgactac agtggcaccg gcctgaacag tggcagcaaa gtagtgctgg cggcctacgg
     1741 cgaaaagctc cgtgaactgg ctaccgaagt gcc
//
LOCUS       DATIQF010000314         6015 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_217929,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000314 DATIQF010000000
VERSION     DATIQF010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6015
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217929"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1258)
                     /locus_tag="VLL95_05185"
     CDS             complement(<1..1258)
                     /locus_tag="VLL95_05185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38287.1"
                     /translation="MQRIAVFLLVLLAVACQKEKLPTEENSAQPTQAVKQYADKLTAV
                     KLFLKNKVDPSLDNLLEWEGATRIEKQGKLKAWKVGMKGSDRLNVQFVLVNVDQNGNP
                     GSASRNIVRYETRFGIDRFPVFILNQNYATGVTKQYFTVDTDMGGSGRNVKRLSLDGG
                     GTLPMVTVIGQYGNGSTTGVVSGSAAYILAAMLGMEGSSGGSSGEGTGNGDGAFNNYT
                     NLDYLDPLYGTSGGGTVYDNPPPAVITWEMDESDKKPAIDIEKYLKCFDNIPDAGATY
                     QVKVYVDIPVNQTPDVLIGTSQSTGEFGPGHVFMKLSKFNGSQTVSQVFGFYPANGLK
                     SATMNAVPSKMVDDGNAQGTQHEFNASMSMGNWNGPEFRQLLQQIRSNSTRQYELDQF
                     NCANFVATCINGVKPGTLASDPVLVYD"
     gene            complement(1485..2168)
                     /locus_tag="VLL95_05190"
     CDS             complement(1485..2168)
                     /locus_tag="VLL95_05190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38288.1"
                     /translation="MQKLCFLFLLVLLSSCHKELMAPEVDEMEVVQSYLQKRLDAATI
                     NLLDWSKAEAIHSGEVTVGYKIPLVNSTSATYRFILVDAVSDKMKGVFRNDIQYARRP
                     EGLIPEKITNYDFQTGLEHVYGTHEMIAPSLPGIQMTDSLATLARTFKVPAMTAIGIY
                     NNDGTASKPSSIKEIRTYLLAYLLGLDVGGIRGKVLKEAPSGIHFYNPLFDAEKDKNM
                     QVIEWEIGQ"
     gene            complement(2269..2817)
                     /locus_tag="VLL95_05195"
     CDS             complement(2269..2817)
                     /locus_tag="VLL95_05195"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HSR38289.1"
                     /translation="MLQSILPMSEGLLEYLQQKLETRQYKSGELLLKEGQVSSFIAFI
                     ESGMVRSYYYKDGEKLTSWFMKEGDVIISVESFFSQVPSSECIEALENVTVHAISYDD
                     LQYCYRYYPEFNVHGRVLTEKYYVLSEERLHMLRKRTSKEKYAYLLEKHPDILNRARL
                     GDIASFIGVNLETLSRIRSDKA"
     gene            complement(2926..3498)
                     /locus_tag="VLL95_05200"
     CDS             complement(2926..3498)
                     /locus_tag="VLL95_05200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38290.1"
                     /translation="MKSFYRVVRGHVVTGFIFVLPLLITISVISKFWKQLIAAGAKLS
                     KLFFLDTVLGSAGDAVMAILLMLLICIVAGFLVKLTVFKSLSDKIDSWLGTLIPSYNS
                     LKGDTLKKLGTINDEPVVYQTCLVKRAGLWQPAYLVESKEDGSVVAFVPNAPKPDTGQ
                     VVLANTNEWKPAEMDSLTLNNILKKMGRGL"
     gene            complement(3677..4240)
                     /locus_tag="VLL95_05205"
     CDS             complement(3677..4240)
                     /locus_tag="VLL95_05205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38291.1"
                     /translation="MKSTLKKIRNHIVTGFIFVLPTLVVVFVISKYWKYLVSFGGKLS
                     KFIFLDTVLGPVGDAILFLLLICVVAGFLVKLSVFKTLSDKIDEWLGTMIPSYSTLKG
                     DALKTLGSESDGAVVYQTCLVRMGVLWQPAYLIERKEDGSIVAFVPNVPEVNTGRVML
                     AGANDWQPSSLDSLALNGILKKMGKGL"
     gene            4387..5841
                     /locus_tag="VLL95_05210"
     CDS             4387..5841
                     /locus_tag="VLL95_05210"
                     /inference="COORDINATES: protein motif:HMM:NF028437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5106 domain-containing protein"
                     /protein_id="HSR38292.1"
                     /translation="MLAACFFAGVLLGAAPANAQSNGSDAEGYNIQLDLKPYSNQWIY
                     LASYYGSIKTLADSAFLNKDSKGVLKGPKPLPQSVYIIASPSKTILVEVLVGKDQAFS
                     VAADTTNIESTLKITGSPDNDQFFAYTSFIAPRARRAEMIRPQLDSAKGAQKEKLEKE
                     MAQLNKEIIDYRKEVMAKSPESLLAALFFVMQDVEIPSELMNPKTRKDTIAQYRYAKD
                     HYWDGVDFMDGRLVRTPVFDNKLTRYLENWVSPEPDSIIYEYNWMIALGRNDEEMEKY
                     LVGYFIDHYMYPKIMGQDKVFLHVYEKYVAGDKPKASWLNEKQIKIITERAYMVMANQ
                     LGAKGWDMELVDTAGKTRTLYSVNADYTIVSFWDVHCGKCKEDMPKLDTLYRTKWKGK
                     GVKVYAVMVNESAKADWPPYIRKLSPDWIHVHQPEAVRKAEEKAGKPNFRQLYDMRST
                     PTIYLLDKEKRIIAKNISVNDVDKLLQQKMGTKN"
BASE COUNT         1644 a         1461 c         1342 g         1568 t
ORIGIN      
        1 gatcatacac cagcactggg tcagaagcca gcgtgcccgg ctttactcca ttgatgcagg
       61 tcgccacaaa attggcacag ttgaactggt ccagttcata ctgccgtgtt gagttggacc
      121 ttatttgctg aagcaactgc ctgaattcgg gtccattcca gtttcccata ctcatgctgg
      181 cgttgaattc gtgctgcgtt ccctgtgcat tgccatcatc taccattttg ctgggcacgg
      241 cgttcatggt tgcacttttc agaccgttgg ccggatagaa accgaatacc tgcgatacag
      301 tctgactgcc attgaacttg gacaatttca tgaatacgtg gccgggtcca aattcaccgg
      361 tgctttggct ggtgccaata agcacatctg gggtttggtt caccgggatg tccacataga
      421 ctttaacctg gtaggtggcc cctgcatcag gaatgttgtc gaagcatttc aggtatttct
      481 caatatcaat ggcaggcttt ttgtcagatt catccatctc ccaggtaatt actgcgggag
      541 gaggattgtc ataaaccgtt ccgccgccac tggtaccata cagcggatcc aggtaatcga
      601 ggttggtata gttattaaag gcgccatcac catttccggt tccctcgcct gaagaacctc
      661 cggaagaccc ttccattcca agcatggcgg ctaggatgta ggctgccgaa ccagacacaa
      721 cgccagttgt tgagccattg ccatattggc ctatcacagt taccattggt aaggtaccgc
      781 cgccatccag cgaaaggcgc ttcacatttc ggcctgatcc acccatatca gtatctacag
      841 tgaagtactg cttggtgacg ccagtagcgt aattctggtt gagtatgaaa acgggaaaac
      901 ggtcaattcc aaaacgtgtt tcgtaacgaa ctatgttgcg ggaggcagaa cccggatttc
      961 cattctggtc cacgtttacc aacacgaact gaacattgag acgatcactg cctttcatcc
     1021 ctactttcca ggccttcaat tttccctgct tttcaattcg ggtggcacct tcccattcca
     1081 acaggttgtc gagagaggga tcaaccttgt ttttcaaaaa gagttttact gccgtaagtt
     1141 tatcggcata ttgctttaca gcctgtgttg gctgagcaga gttttcctcg gttggcagtt
     1201 tttccttttg acacgctact gccagcaaaa ccagtagaaa tacggcaatt ctttgcatgg
     1261 cccattgttt taagaaccaa aacaaagaca ttatccacat tcaaaaattt gacaaatgtc
     1321 aaaatcggtg ttacaacaag gatttttagc aactattttt gcaatttggt tgcattaatt
     1381 gctatttttc ctgcatactt cttgcggaaa gtcaaaattt tcctgttgcg cacaccccga
     1441 ttggccaaga tatccacata tcttttgcct caattaccca taccttattg ccctatttcc
     1501 cattctatta cttgcatgtt tttgtccttt tccgcatcga aaagtggatt gtagaaatga
     1561 attcctgacg gtgcctcctt cagtaccttt ccccgaatgc cccccacatc aaggccgagc
     1621 aggtaggcca gcaaataggt cctgatttcc tttatggagg atggcttgga agcggtacca
     1681 tcattattat atataccaat ggccgtcatg gccggcactt tgaaggttct ggccagggtg
     1741 gccagcgagt cggtcatttg aatgccaggc aaactcgggg caatcatttc atgggtccca
     1801 taaacgtgct ccagccctgt ttggaaatca taattggtga ttttttcggg tataagcccc
     1861 tcgggccgcc tggcatattg aatgtcattc cgaaacactc ctttcatttt gtcggaaact
     1921 gcatccacca ggatgaaccg ataagtggcg gaagtactgt ttaccagcgg gatcttgtac
     1981 ccaacggtca cctcgcctga atgaattgct tcagctttgc tccaatcgag caggtttatg
     2041 gtggccgcat ccagtcgctt ctgaaggtag ctttgcacca cttccatttc gtccacttcc
     2101 ggtgccatga gttctttgtg gcaagaactc agcaacacca acaggaaaag gaagcatagt
     2161 ttttgcattg cttgaatttt gcgtaaagca aatgcaaaaa gcctattcgt tgatttgcga
     2221 aaaatcaaaa tcgcaacttg cgaaaaatca aaatcgtaaa aagaaaaatc aggctttgtc
     2281 tgaacggatt cggctgagcg tttcaaggtt cacgccaatg aaagaggcga tgtcgccaag
     2341 acgtgcccga ttcaaaatgt caggatgctt ttctaaaagg taagcgtact tttctttaga
     2401 ggtgcgcttg cgcagcatat ggagtcgctc ttcgctcaat acataatact tctctgtcag
     2461 caccctgccg tgcacgttaa attcgggata gtaacgatag caatattgca aatcatcata
     2521 actgatggca tgcaccgtta cgttttccaa cgcttcaatg cattcagaag atggcacctg
     2581 gctgaaaaag ctttccaccg agatgatcac atcgccttct ttcatgaacc atgaagtaag
     2641 tttttcacca tccttataat agtaagaacg caccatgcca gattctataa aggcaatgaa
     2701 actggagacc tggccttcct tcagcaataa ttcaccagac ttgtactgcc ttgtttccaa
     2761 tttctgctgc aagtattcca ataagccttc ggacatcggc aagatggact gcagcatttg
     2821 aacgagcata ttgttcatag ggggtcacgc ttaaagtgta aaattagaag gcattcatga
     2881 taatcgaagt cttgtgttat gcgcatttcc acaatactat gatgtttaca aacctctacc
     2941 catttttttc aggatattgt tcaaggtcag cgaatccatt tctgcgggtt tccattcatt
     3001 ggtattggcc agtactacct gccctgtgtc cggtttaggg gcgttgggca caaaggcaac
     3061 aacggatccg tcttcttttg attcgacaag gtaggctggt tgccacaatc ccgccctttt
     3121 taccaggcag gtttggtaca ccactggctc atcatttatc gtgccaagtt ttttcaaagt
     3181 atcccccttc aggctattat aagaaggtat cagcgtgcct aaccaggaat caattttgtc
     3241 actcaggctt ttgaatacag tcagctttac caggaatcct gccacaatgc aaatgagcag
     3301 catgagcaat attgccatca cggcatcgcc tgccgaacca agtacggtat ccaggaaaaa
     3361 gagttttgac aatttcgccc ctgctgctat caactgcttc cagaacttgc ttatgacact
     3421 gatggtaata agcagcggca gcacaaaaat gaacccggtg acaacatgcc ccctgacaac
     3481 acggtaaaaa gatttcatat gtattcgatt tccctaaagt tagcgaggct tatcctcgct
     3541 tcttcatgga aatcatttca tcatcccggt attgccattc ccccctggtc aagaggttgc
     3601 cgggagtgaa cagtgcccca aacctgcaga ttccaaatca ctggtcattt ttcagaggca
     3661 tttgatgcaa aatgcttcat aaccccttac ccattttttt aagaatgccg ttaagcgcca
     3721 gggaatctaa agaagagggc tgccaatcgt tcgcaccagc cagcatcacc cggcccgtgt
     3781 tcacttcggg gacgttgggc acaaaggcga ctatcgaacc atcctctttc cgctcaataa
     3841 ggtaggcggg ctgccataat actcccatcc tgaccaggca ggtctgatac accaccgccc
     3901 catcactttc cgagccaaga gtcttcagcg catcgccttt caaggtgctg taagagggga
     3961 tcatggtacc caaccattca tcaattttgt cactcagcgt tttgaaaaca ctcaatttta
     4021 ccaggaagcc tgcaactaca caaatgagga gcaggaacaa tatggcatct ccaacggggc
     4081 ccagtacggt atccaggaaa atgaacttcg acagtttgcc gccaaatgaa accaggtatt
     4141 tccaatactt gctgatcaca aatacaacca caagtgttgg cagtacaaaa atgaacccgg
     4201 taacgatgtg gttccttatc ttcttcagtg tgcttttcat atgactatct tttcaataaa
     4261 aatagcactc acgtgctgtg tattattatt gaaatccttt taacatgcgt gcatttactt
     4321 ttatcccata ttaagtaaag ccaaccaatg aatagtgtac cacttcgccg gatgacaaaa
     4381 tcactcatgc ttgcagcctg cttttttgct ggcgttttgc ttggggccgc ccctgcaaat
     4441 gcccagtcca atgggtcaga cgctgagggt tataatattc agctcgattt gaaaccgtac
     4501 agcaaccagt ggatttacct ggccagctac tatggaagca tcaaaacgct ggccgacagt
     4561 gcctttctta ataaggacag caagggtgta ctgaaaggcc ccaaaccgct tccgcaaagt
     4621 gtatacatca ttgcttcccc atccaaaacc attttagtgg aagtgctggt gggcaaggat
     4681 caggctttta gtgtagcggc tgacaccacc aatattgaaa gcaccttgaa aattaccggc
     4741 agtcctgaca acgaccagtt tttcgcttat accagtttca tagccccccg ggcaagaagg
     4801 gcagaaatga tcaggccgca gttggactcg gccaagggcg cccaaaaaga aaaactggaa
     4861 aaggaaatgg cccaactgaa taaggaaatc attgattaca ggaaggaagt gatggccaaa
     4921 tcgccggaat cattgctggc cgccctgttt tttgtgatgc aggatgtaga aatcccctcc
     4981 gaactcatga atccgaaaac ccggaaggat accatcgccc aatatcgata cgcaaaggat
     5041 cactactggg atggcgttga tttcatggat ggcaggctgg tgcgtacacc ggtatttgac
     5101 aacaagctga ctcgatatct tgaaaactgg gtatcgcccg aaccagacag cattatatat
     5161 gaatacaact ggatgattgc gcttgggcgt aatgatgaag aaatggaaaa gtacctggtg
     5221 gggtatttca tcgaccatta tatgtatccc aagatcatgg gacaagacaa ggtgtttctg
     5281 catgtatatg aaaaatatgt agcgggtgac aaacccaaag ccagctggct caatgaaaag
     5341 cagatcaaga tcattaccga acgggcttat atggtcatgg ccaatcagct gggagccaaa
     5401 ggctgggata tggaactggt ggacacggcc ggcaaaacga gaacattgta cagcgtgaat
     5461 gccgactata ctattgtttc gttttgggat gtgcactgtg gcaaatgcaa ggaagacatg
     5521 ccaaaacttg ataccttgta ccgaaccaag tggaagggca aaggcgtgaa agtatatgcg
     5581 gtcatggtaa acgagtcagc aaaggcggac tggcccccat acattcggaa actcagccct
     5641 gactggattc atgtacatca acccgaagcc gttcgaaaag cagaggagaa agcgggcaaa
     5701 cccaacttca ggcagctcta tgatatgcgc agcacgccta ccatttattt gctggacaag
     5761 gaaaagcgaa tcattgccaa aaacatttca gtgaatgatg ttgacaaatt gctacagcaa
     5821 aagatgggta ccaagaattg agtggcgcag gccactgttg gggactttgg cagcaacagc
     5881 aatgctgatg atgacaaagc agcagtcgca agctcaaaca ttattcactt atggcaagca
     5941 caccgcttcc aaagaagagt ttattcgatc tttcgaaaaa aacgccccgg cgacagacaa
     6001 gcgcaaagcg atggc
//
LOCUS       DATIQF010000315         2701 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_217948,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000315 DATIQF010000000
VERSION     DATIQF010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2701
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217948"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..858)
                     /locus_tag="VLL95_05215"
     CDS             complement(<1..858)
                     /locus_tag="VLL95_05215"
                     /inference="COORDINATES: protein motif:HMM:NF014868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38293.1"
                     /translation="MAAKKTTAKGLSFARQYTKEGVTPYDMFEYDYRTSMIKDPSGKI
                     IFQMDNVEVPKHWSQIATDILAQKYFRKAGVPQTDGSTGRETSSKQVAHRMADCWRQW
                     GERYGYFASAKDAQVFYEELVYSILNQMAVPNSPQWFNTGLYSAYGIAGKPQGHYFVD
                     PVDGQLKKSTSAYERPQPHACFILSVSDDLVNDGGIMDLWIREARIFKYGSGVGTNFS
                     QIRGEGEKLSGGGSSSGLMSILKIGDRAAGAIKSGGTTRRAAKMVCLDLDHPEIVDFV
                     DWKVEEEKKV"
     gene            1456..2511
                     /locus_tag="VLL95_05220"
     CDS             1456..2511
                     /locus_tag="VLL95_05220"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSR38294.1"
                     /translation="MMPKRISYYWLCQVGGWGFYVLLYTFYYYTINYYYSDYPYYFHT
                     VFCEAGTGLLISHLMRTVIRESKLLDLSIQRQIIWMAIITIAFGLIYSSVVVTIESVM
                     GWEPEYFIGASFVYKWARTALGGGLFFTIWSLIYLTYHYVMSTQRERLNQVKLEALVK
                     ELELKTIKAHINPHFIFNALNSIRALIDENPARARNAFTELSQLLRSSMNADKEELVS
                     LERELSIVKNYLALEQIRFEDRLRVSLNIDEDTLKQQLPPMMLQTLVENAIKHGISKE
                     MKGGEISIISDFVDDHHELIVRNTGKLNEEGDSEGFGLNSTRNRLHLLFGDKAKFHIQ
                     DTPDYIVEAKVIMPVTV"
BASE COUNT          711 a          676 c          641 g          673 t
ORIGIN      
        1 aactttcttc tcttcctcca ctttccaatc cacaaaatct acgatctcag ggtggtccag
       61 gtcaaggcat accatttttg ccgcacggcg ggtggtacca ccactcttga tagcgccagc
      121 tgcacggtcg cctattttca ggatactcat caggccactg ctgctgccac caccgctcag
      181 tttttcgcct tcaccacgaa tctggctgaa gttggtaccc acaccagaac cgtatttgaa
      241 aatgcgggct tcgcggatcc acaagtccat aatgccgccg tcattcacca gatcgtcgct
      301 aacactcaga atgaagcagg catgaggctg aggcctttcg taggccgaag tagatttttt
      361 cagttggcca tccacaggat caacaaagta gtggccctgg ggcttgccgg caatgccgta
      421 agcgctgtac aggccggtat tgaaccactg cgggctgttg ggtaccgcca tctggttaag
      481 aatgctgtac actaactcct cgtaaaaaac ctgtgcgtct ttggcactgg caaaatagcc
      541 gtaacgctcg ccccactgcc tccagcaatc cgccatgcgg tgtgccacct gcttgctgct
      601 ggtttcacgt ccggtacttc cgtcagtctg aggtaccccg gctttgcgga aatatttttg
      661 cgccaggatg tcggtagcga tctggctcca atgtttgggc acttctacat tgtccatctg
      721 gaaaatgatt tttcctgaag gatccttgat catagaagta cggtaatcgt actcaaacat
      781 gtcgtacgga gttacacctt ccttggtgta ttggcgggcg aaggaaagcc ccttggcagt
      841 ggtttttttg gcggccataa acaatctatt ttgagggtta gcggatggga aaatcttgtg
      901 ttatcaaaaa gttaagcggg taacgaaaat attcccctga ctcccaaaaa acccaatgtt
      961 aatctgcaca tttttccgct gcgctgtgga tttctcagtg aaacttttgc cctgcctgca
     1021 ttgcgtgact tttccccatg ggatgtgaaa aaaatgcctg tttttccgca ttttttcgat
     1081 acaataattt tcccctataa agtttaggaa tatcctcgtg aaagggcaga tttttcaaac
     1141 agaatctaat tctgagccgg tacagcgact gcagcgctac ggcgtcaggc agggaacaat
     1201 tcgggccaga atagaggcta aaacggccat tgactccacg caggcagcgg ccgttgcaaa
     1261 agcggggtgc caggtggcgg cgccatctct tccccctatt taaccactca accacaaagc
     1321 caaccatata cgtaagaaca atgctgccgt gaccccatgc cggtaatttt ggaaggataa
     1381 tcggatatta caccacacgg accgcggtaa atggtaagcc caggtggcaa tctgcaggct
     1441 ccggtgtcag aaacaatgat gccaaaaaga atttcatatt actggctttg ccaggttggg
     1501 ggttggggct tttacgtgct cctgtatacg ttctactact ataccatcaa ctattactat
     1561 tccgactacc catactattt ccatacagtg ttctgcgaag caggtacagg cttgctcata
     1621 tcgcacctca tgcgcactgt gatccgtgaa tcaaaactgc ttgacctgag catacaacgg
     1681 cagatcattt ggatggccat catcaccatc gcattcggcc ttatatacag cagcgtggtt
     1741 gttaccatcg aaagtgtgat gggttgggaa ccggaatatt tcatcggcgc ttcgtttgta
     1801 tacaaatggg cacgcacagc ccttggcggc ggtttgtttt tcaccatctg gagcctcatc
     1861 tatcttacgt atcactatgt gatgagcacc cagcgggaac gcctcaacca ggtgaagttg
     1921 gaagcactgg tgaaagaact ggaactgaag accatcaagg cgcatatcaa tccgcatttc
     1981 atttttaatg ccctcaacag catacgtgca ttgattgatg aaaacccggc ccgagcaagg
     2041 aacgccttta ctgaactgag ccaactgttg cgcagcagta tgaatgccga caaagaagaa
     2101 ctggtgtcgc tggaaagaga gttgtccatt gtaaaaaatt acctggcgtt ggagcaaatt
     2161 cggtttgaag atcgcttacg ggtttcgctc aacatagatg aagacactct gaagcaacaa
     2221 ctgcccccca tgatgttgca aacgctggtg gaaaatgcca tcaagcatgg catcagcaag
     2281 gaaatgaaag ggggcgagat cagcatcatc tccgattttg ttgacgatca tcatgaactg
     2341 attgttcgca ataccggcaa actcaatgaa gagggagaca gcgaaggctt tggcctgaac
     2401 agcacccgca acaggctgca cctgctgttt ggcgataagg cgaaatttca cattcaggac
     2461 acccccgatt atattgtgga ggcaaaagtg ataatgccgg taaccgttta aaacaacatc
     2521 tcattacaaa tacaaccgta tgcaaaaaag agccatttta attgatgatg aacgcctggc
     2581 acggcaggaa ttgcgcaaga tactggctga gttccccgat atagaaatcg tggacgaggc
     2641 gggcaacgta caggaaggtc ttgaaaaaat agacttgcac aatcctgaca tcattttcct
     2701 c
//
LOCUS       DATIQF010000316         5980 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_263620,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000316 DATIQF010000000
VERSION     DATIQF010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5980
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263620"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1847
                     /locus_tag="VLL95_05225"
     CDS             <1..1847
                     /locus_tag="VLL95_05225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38295.1"
                     /translation="YEQADAYLQQSLAVNFENPDQRSQTFLLMGDARFKAKKYGNAAL
                     PYDSADVDMVKPVDSLRVMQRRPGTKAVYEAEKVISVYDSLLQLAAMPEESRIEYVKA
                     LNKRLRKERGLKEEALPAGTMASAGGSETELFAGGSTWYFYDASRRANGFNSFRRKWG
                     DRPNTDNWRRSSAISNAAFAGRQRPQPSEPDNGVVTTDDGEKYDTTDISFDNLYSRIP
                     LSEERQLKANNRINYAMFAKATALYEKVEDYPEAIKVYEALLERLDSGKLVAPSLFNL
                     IYCYNKVGNKQAAAEAKKALERNFPGDPLTQRAKEAKSSEPSAAEKEKAAATKMYEKV
                     YSLFLEGSFDKAVALKKEADLQFGKNYWTPQLVYIETVYFLQKRDDSAAMRNLDAIIG
                     QFPDHALAARAKIIKEVLPKRKEIEAYLTELDIVRAQEDKVIMPAETMPAKKVQPTKQ
                     QAPSAVVPATVKKPTVDSSAVILKPAVVATPEKVLPYTIDANGKQMVAIVLENIDPAY
                     VNEVNYSFNNHPKRNYVRASVTVEKKKLRDKLWLILIRSDYFTNATTTYEYIDYIKPL
                     AAKEILTWLDANKYHFILLSEENLKKLEADPKLDVYEQILKQTFPGKF"
     gene            1847..2368
                     /locus_tag="VLL95_05230"
     CDS             1847..2368
                     /locus_tag="VLL95_05230"
                     /inference="COORDINATES: protein motif:HMM:NF019284.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38296.1"
                     /translation="MRNKLAPAGFFFLMAIGFAYCKPAVSDIMVEVVDTAYIKQLPSL
                     ADTFFNTPLGGNEKILGAATAVQYNIGGNQKELLLHFDATGNVVAMREKRYGKTIDSV
                     FFYPNGQRMFQLNLDADGLADGSARYFYPDGRVKEDGRYQQGRKNGIWRHFKEDGKLQ
                     QTAEYDRYGNKTR"
     gene            2468..4876
                     /locus_tag="VLL95_05235"
     CDS             2468..4876
                     /locus_tag="VLL95_05235"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HSR38297.1"
                     /translation="MTRSVRILWKIVFGTLALVIVLFLATNFGLLGKMPSIEDLQNPS
                     ASIASEVYADDGTPMGKFYLEDRSPVAYKDISPFVIKALVATEDERFYEHSGIDGKSL
                     LRAVKGIITFNPAGGASTISQQLALNLFGGQRASNKLSRGVQKLKEWIIAVKLERNFT
                     KDEIITYYLNTVAFGDNVYGIRNAARTFFQKEPDRLELTEAAVLVGMLKANTTYNPRR
                     NPKAALDRRNTVLDQMVRNKFLSPQESESLKREPIKLNYKKLDANAGIAPYFRENVVK
                     EEVRRLLKDITKANGDPYDIYRDGLKIYTTINPRMQLYAEEALARNIAAQQRVFKNFQ
                     HIKNGTVFEERKKELEKFIKQSDRWRAQREDGMEDEENRKTFDVPVQMKIFAWNNKRE
                     TDTTMTPLDSIKYLKTMLQSGFMAMEPQTGFVKAWVGGIDYKTFKIDHNNLNVKRQAG
                     STIKPMLYCQAIEEAGFTPETPLPNVPQNFPGYGMVPATGKGASGGTPPMAIAIAKSL
                     NGSAAYLMKQIGPNRFVEFLKRCNVQTEVDAYPSIALGSCDLSLYELMWMYTMFPGRG
                     FNTKPQFISRIEDRNGNILLNVAPQIKEVISEVTAYTMCKMMGGATRYGTATRMNAYG
                     IRAEMGAKTGTTNNNTDAWFMAYTPELLVGTWVGCDENWIHYPSNSALGYGGSAALPA
                     CGMFMQSVYNDRKLGYDPEAKFVKPAVDRNDIIYDYFQNLSGPASPDAEGEDMGNGEA
                     ADYFGDQFGKPDTSGLGQIHAESEIPAEKDKPVKPKPDTTNRKPDNGELSPKAIMPAP
                     AKKN"
     gene            complement(4949..5776)
                     /locus_tag="VLL95_05240"
     CDS             complement(4949..5776)
                     /locus_tag="VLL95_05240"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HSR38298.1"
                     /translation="MTRILVPVDFSKASVNAAEYAMNMASSLEKAELILFHVYAPSGI
                     GSDGSPSNAAEGEKSRENAAQLLEELQVRLFEIAPVPTDFRYGDGEFLEGMHSLLQKE
                     SFDWIVMGLAPASGIEERLVGSSVFDVIDKHNLPVVIVGEEMTFKPIQKMALAVELSK
                     VHEVVPYGRIKMMLDYFNPELHIVYANDEDTAVLSEAQLEEKQKLVKMFEANNPTFTQ
                     LHIYNFVDSINKFVHQQNIDLMIVMPRKLSLWQKLFGYSHTRKLAYHGIAPVMAIHD"
BASE COUNT         1719 a         1488 c         1432 g         1341 t
ORIGIN      
        1 gctatgagca ggctgatgcc tacctgcagc aaagcctcgc agtcaatttc gaaaaccctg
       61 atcagcgcag tcaaaccttt ttgctgatgg gcgatgcccg gttcaaagcc aaaaaatatg
      121 gtaacgcagc cttgccttat gacagcgccg acgttgacat ggtgaagccg gtcgactcgt
      181 tgagggtgat gcaaagaagg ccgggaacca aggcggtata cgaggcagaa aaggttattt
      241 cggtatatga cagcctgctt caattggccg ccatgccaga agaaagccgg atagaatatg
      301 taaaagccct caacaaaaga ttgcgcaaag agcggggatt gaaggaggaa gccctgcctg
      361 ccggtaccat ggcttcggcc ggcggttcag aaaccgaact gtttgcaggc ggcagtacct
      421 ggtattttta tgatgcttcc cgcagggcca atggttttaa ctccttccgc cgcaaatggg
      481 gtgaccgtcc caacaccgat aactggcgtc gcagcagtgc cataagcaat gccgcatttg
      541 ctggcaggca aagaccacaa cccagtgaac ccgataatgg tgtggtcact accgatgatg
      601 gcgaaaaata cgacactacc gacatctcgt tcgacaacct ctacagccgc attccattaa
      661 gtgaagagcg ccagctgaag gccaacaacc gcatcaacta tgccatgttt gccaaagcca
      721 ccgcgctgta tgaaaaagta gaagattacc ccgaagccat aaaggtgtat gaagccctgc
      781 tggaacgcct tgacagcggc aaactggtgg cgcccagcct tttcaacctg atctattgct
      841 acaacaaagt aggcaacaaa caggctgctg ccgaagcaaa aaaagcgctg gaacgaaatt
      901 tccctggtga tcctttgacg caacgagcca aagaagcaaa atcatcggag ccatcagccg
      961 cagaaaaaga aaaggctgca gccaccaaaa tgtatgaaaa ggtgtacagc cttttcctcg
     1021 aaggatcatt tgacaaggcg gtggcactga aaaaggaagc cgacctgcag tttggcaaga
     1081 attattggac accgcagttg gtgtacatcg aaacggtgta tttcctgcaa aagagggacg
     1141 acagtgcggc catgcgcaat ctcgatgcta tcatcggtca atttcccgac catgcattgg
     1201 cagcaagggc aaaaatcatc aaagaagtat tgccaaaacg caaagaaatt gaagcctacc
     1261 tcaccgaact ggacattgta cgtgcccagg aagacaaagt gataatgccg gcagaaacaa
     1321 tgcctgccaa aaaggtacaa cctaccaaac agcaagcgcc gtccgctgtt gttcctgcaa
     1381 cggtaaagaa accaacggtc gattcatcgg cagtaattct gaaacctgca gtggtggcca
     1441 ccccggaaaa agtactgccc tataccattg atgccaacgg aaagcaaatg gtagccatcg
     1501 ttttggaaaa catcgatccg gcttacgtga acgaagtaaa ctactccttc aacaatcatc
     1561 ccaagcgcaa ttatgtgcgg gcatcggtaa cggtagaaaa gaagaaactg cgtgataaac
     1621 tctggcttat tctcattcgt tccgattact tcaccaatgc caccaccacc tacgaataca
     1681 tagactacat caagccactg gcggccaagg agatactgac atggctggat gcaaacaagt
     1741 atcacttcat tctgctttcc gaggaaaacc tcaaaaagct ggaagcagat cccaaactgg
     1801 atgtgtacga acaaatattg aaacaaactt ttcctggtaa attctgatgc gcaacaaact
     1861 ggcccctgca ggtttctttt tcttaatggc aataggtttt gcttattgca aacccgccgt
     1921 aagcgatata atggtggaag tagtggacac tgcttacatc aaacaacttc cctccttggc
     1981 ggatactttt ttcaatacgc ctcttggcgg caatgaaaaa atattaggcg ccgccacagc
     2041 ggttcaatac aacataggcg gcaaccagaa agaactgttg ctgcattttg atgctaccgg
     2101 caacgtggtg gccatgcgtg aaaaacgata cggcaagacc attgattctg tcttttttta
     2161 tcccaacggg caaaggatgt tccagttgaa cctggacgcc gatggattgg ccgatggttc
     2221 tgcccggtat ttttacccgg atggcagggt taaagaagac ggtcgctacc agcagggccg
     2281 caaaaacgga atctggcgtc actttaagga agacggcaaa ttgcagcaaa cagcggaata
     2341 tgaccgatat ggtaacaaaa cccgttgacc cggaattgca ccggatcccc tttcttcaga
     2401 attctaattc ttatctttct atttgcagaa ttattgcgaa atctgcatct gtacataaac
     2461 ccatgtcatg acacgaagcg taaggatact ttggaaaatt gtattcggca ccctggccct
     2521 ggtgattgtg ctattcctgg ccaccaactt tggtttgctg ggaaaaatgc catccattga
     2581 ggacctgcaa aacccctctg catccatagc ttccgaggta tatgccgacg acggcacccc
     2641 catgggcaaa ttctacctgg aagacagaag cccggtggcc tacaaagaca tttctccttt
     2701 tgttatcaag gcattggtgg ccacagaaga tgagcgtttc tatgagcaca gcggcattga
     2761 tggcaaatcg ctcctgaggg ccgtcaaagg catcatcacc tttaatccgg cgggtggcgc
     2821 ttccaccatt tcacagcagt tggcgctgaa cctgtttggc gggcagcgtg ccagcaacaa
     2881 actgtcgagg ggcgttcaaa aactaaagga atggatcatt gccgtgaaac tggaacgcaa
     2941 cttcaccaag gatgagatca tcacctatta tttgaacact gttgcctttg gcgataatgt
     3001 atatggcata cgcaatgcgg cccgcacctt cttccagaaa gaacccgatc ggctggaact
     3061 gacggaggct gccgtgttgg taggcatgct caaagccaat accacctaca acccaaggcg
     3121 taaccccaaa gcggcattgg accggcgcaa cacggtgctc gatcaaatgg tgcgcaacaa
     3181 attcctgtcg ccgcaggagt cggaaagcct caaacgcgaa cccataaaac tcaattacaa
     3241 aaaactggat gccaatgcgg gtattgcccc ctacttcagg gaaaatgttg tgaaggaaga
     3301 agtgcgtcgc ctgttgaagg acattaccaa agccaatggc gacccttacg atatttaccg
     3361 ggatggtctg aagatttata ctacgatcaa ccctcgcatg cagttgtatg ccgaggaagc
     3421 cctggcccgc aacattgctg cgcaacagcg tgtcttcaaa aacttccagc atatcaagaa
     3481 tggaactgta tttgaagagc ggaaaaaaga actggaaaaa ttcatcaagc aaagcgatcg
     3541 ctggcgggca caacgcgaag acggcatgga ggatgaggaa aaccgcaaaa catttgatgt
     3601 gcctgtgcaa atgaaaatct ttgcctggaa caacaagcgg gaaaccgata ctaccatgac
     3661 gccgctggat tccatcaaat acctgaagac gatgctgcaa agtggcttca tggcaatgga
     3721 acctcagact ggcttcgtga aagcctgggt aggcggtatt gattacaaga cattcaagat
     3781 cgatcacaac aacctgaacg tgaaacgaca ggcgggctca accatcaagc ccatgttgta
     3841 ttgccaggcc attgaagaag caggctttac tcctgaaacg ccattgccca atgtgccaca
     3901 aaattttccg ggctatggca tggtacctgc caccggcaaa ggtgcctctg gcggaacgcc
     3961 acccatggct attgccattg ccaaatcatt aaatgggtcg gcggcgtatt tgatgaagca
     4021 aattggcccc aaccgctttg ttgaatttct gaagcgatgc aatgtgcaga ccgaagtgga
     4081 tgcctatcct tctatagcac tcggcagttg cgacctcagc ctctatgaac tgatgtggat
     4141 gtataccatg ttccctggcc ggggattcaa taccaaacct cagtttatca gccgcattga
     4201 agaccgcaat ggaaacatat tgctgaatgt ggcaccccag ataaaagaag tgatcagcga
     4261 agtgaccgcc tataccatgt gtaagatgat gggtggcgct acccgctatg gcaccgccac
     4321 ccgtatgaat gcctatggca tcagggcgga aatgggcgca aaaacaggca ctaccaacaa
     4381 caataccgat gcctggttta tggcctatac gccggaactg ctggtaggca cttgggtggg
     4441 ctgcgatgag aactggatac actacccttc taattcggct ttaggttatg gtggcagcgc
     4501 ggcattgcca gcctgtggta tgtttatgca gagcgtatac aacgaccgga aactgggtta
     4561 cgacccagag gccaaatttg taaaacccgc agtagacagg aatgacatca tttatgatta
     4621 cttccaaaac ttgagcgggc ctgcttcacc cgacgctgaa ggcgaagaca tgggcaacgg
     4681 cgaagcagct gactattttg gtgaccagtt tggaaaaccc gatacttcag gactgggaca
     4741 aatacatgct gagagtgaaa tacccgccga aaaagacaaa ccggtgaagc ccaagcccga
     4801 tactaccaat cgcaaaccgg ataatggcga attgtcccca aaagccatca tgccagcgcc
     4861 ggcaaaaaag aactaagcat tccaaacttc caggactata taccaaaaag ccccgcatgt
     4921 gcggggcttt ttaggctgat caagtttatc aatcgtgaat ggccattacc ggggcaatgc
     4981 catgatacgc caatttccgt gtatggctgt agccaaacaa tttctgccac aaggaaagtt
     5041 tccttggcat tacaatcatg aggtctatgt tttgctggtg cacaaatttg ttgatggaat
     5101 caacgaagtt gtaaatgtgc aattgtgtga acgtaggatt gttcgcttca aacattttca
     5161 ccagtttctg cttctcttcc aattgtgctt cacttagcac ggcagtatct tcatcattgg
     5221 catacacaat atgcaattcc gggttgaagt agtcaagcat catcttgatt ctgccatatg
     5281 gaactacttc atgcactttt gacaattcca cggccaaagc cattttttgg atgggcttga
     5341 atgtcatctc ctctcccacg atcactacgg gaagattgtg tttatcaatg acgtcgaaaa
     5401 cgctgctgcc aaccaggcgt tcttcaattc cggatgccgg ggcaaggccc atgactatcc
     5461 aatcaaaact ctccttttga aggagcgaat gcattccttc caaaaattca ccatcgccgt
     5521 agcggaagtc ggtgggcact ggcgcaattt caaatagcct aacctgcagt tcttccagca
     5581 gttgggctgc attttcacgg cttttttcac cttcagccgc attggagggc gaaccgtcgg
     5641 aaccaatgcc ggatggagca tacacatgaa aaagtatgag ttctgctttc tccaaactgg
     5701 aagccatgtt catggcatac tcagcagcat ttactgaggc ttttgaaaaa tcgactggca
     5761 caaggattct ggtcatatca aaaggttttg agacagggac aaggtagtac gcacctgcac
     5821 caattactat gacagatatc agtagaaaaa ctgacttaca aaggcggtct taattgttac
     5881 ttgccccacc cccatttgaa aaattcgggg aatgcccggg cccatgtggg tacatcgtgt
     5941 ttaccatcgg ccaactccag gtaatgaata tcggtttcct
//
LOCUS       DATIQF010000317         1982 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_293910,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000317 DATIQF010000000
VERSION     DATIQF010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1982
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293910"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            102..656
                     /gene="nuoI"
                     /locus_tag="VLL95_05245"
     CDS             102..656
                     /gene="nuoI"
                     /locus_tag="VLL95_05245"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF004538.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HSR38299.1"
                     /translation="MQPLTNRAKQVDRRPMSFAESLYLPAIFKGMAITFSHLFKKRPT
                     IQYPEVQRPFSQVFRGLHVLNRDEEGRERCTACGLCAVACPAEAITMEAAERQQGEEN
                     LYREEKYAAKYEINMLRCIFCGLCEEACPKDAIYLSETFAPANYNRKGFIYGKEELLI
                     PNPVTEKEAYEQAAAGRVRKPVNA"
     gene            742..1242
                     /locus_tag="VLL95_05250"
     CDS             742..1242
                     /locus_tag="VLL95_05250"
                     /inference="COORDINATES: protein motif:HMM:NF012709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HSR38300.1"
                     /translation="MNTFQIAFWFLSALAVFSSLMVITRKNPVYSVLYLIVTFFAISG
                     HYILINAQFLAIVNIIVYAGAIMVLFLFVLMLMNLNKESEQHKNKYMLWSSAIAGGML
                     MIVLIAALDTPNPAIIQQPASGEIGLIKNLGMALFKDYVVPFEISSILFLSAMVGAVV
                     IGKKGD"
     gene            1268..1606
                     /gene="nuoK"
                     /locus_tag="VLL95_05255"
     CDS             1268..1606
                     /gene="nuoK"
                     /locus_tag="VLL95_05255"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF004320.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HSR38301.1"
                     /translation="MPTTYYIFLAIIIFSIGVTGVLTRRNAIIVFMCIELMLNAVNLL
                     LVAFSKYHHQRMLVLDAAAVNAGIEAQLFVFFIMVVAAAEVSVGLAIIVLMYRNVHSV
                     DINFLNRLKN"
     gene            1635..>1982
                     /locus_tag="VLL95_05260"
     CDS             1635..>1982
                     /locus_tag="VLL95_05260"
                     /inference="COORDINATES: protein motif:HMM:NF012868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38302.1"
                     /translation="MKFAPFIPLLPLAGFLINGLLRNKLSKAATGIIGSGVVLVAFLL
                     SFMVFNATRAGETQVFQLFDFINVKNLKIAFEFQVDQLTSLFLMVITGVGFLIHVYST
                     AYMHEESDAHFARY"
BASE COUNT          497 a          463 c          485 g          537 t
ORIGIN      
        1 ggtagtgctt tggatgcaaa atggaaaacc ctggtaattg aaattgtttt gaaaggcatc
       61 agccggaaag aaaagaattg aaaaaggaaa gttgaaagat tatgcaacca cttaccaata
      121 gagccaaaca agtagatcgc aggccgatga gctttgctga aagcctatac ctgccggcca
      181 tcttcaaagg catggccatt actttcagcc atttgttcaa gaagcgtcct accattcagt
      241 atcctgaagt gcagcgtccg ttcagccagg tatttcgcgg tttgcatgta ttgaaccgtg
      301 atgaagaggg acgcgaacgt tgcacagcct gtggtttgtg tgcagtggcc tgtcccgctg
      361 aagccattac catggaggcg gcagagcgcc agcagggaga agagaatttg tatcgggaag
      421 aaaagtacgc ggccaaatac gagatcaata tgctgcgctg cattttctgc ggcttgtgcg
      481 aagaggcttg ccccaaagac gccatttacc tgagcgaaac gtttgcccct gccaactaca
      541 atcgtaaagg ctttatttat ggcaaggaag aattgctgat ccccaacccg gttacagaga
      601 aggaagctta tgaacaagcg gctgccggca gggttcgcaa gccggtgaat gcctgatgcg
      661 gattgatgaa actgcttcca cacaccgcag ttttataacg acccacaccc cgatgatgat
      721 ttaactgcta tcaaccaacc gatgaataca tttcaaattg ctttttggtt tttgagtgca
      781 ctggcggtgt tcagttcgct catggtcatt acccgaaaga acccggtgta cagtgtattg
      841 taccttattg tcaccttctt tgccattagc ggacactaca ttttgataaa tgctcagttc
      901 ctggccatcg tcaacattat tgtgtatgcg ggcgccatca tggtgttgtt cctgtttgta
      961 ctgatgctga tgaacctgaa caaggaatcg gaacaacaca aaaacaaata catgctttgg
     1021 agcagcgcta ttgccggtgg catgctgatg attgtgctga tagctgcttt ggacacgccc
     1081 aacccggcca ttattcagca gcccgcttcc ggagaaattg gcctgatcaa aaacctgggt
     1141 atggccctgt tcaaagacta tgtggttccc ttcgagatca gcagcatcct cttcctcagc
     1201 gccatggtag gtgctgtggt gattggcaaa aaaggagact aaccaaacat caaacgcatt
     1261 ttaagttatg cctacaacat attacatctt tctcgccatt atcatcttct ccattggagt
     1321 gacaggcgtg ctcacccggc gcaatgccat tattgttttc atgtgcattg agttgatgct
     1381 gaacgcggtc aacctgttgc tggtggcgtt ttcaaagtat catcatcagc gcatgctggt
     1441 gctggatgcc gcggctgtca atgctggtat cgaagcgcag ttgtttgtgt tcttcattat
     1501 ggtagtggcc gccgccgaag tgagcgttgg tcttgccatc atcgtgttga tgtatcgaaa
     1561 tgtacacagc gtggacatca acttcctcaa ccgactgaaa aactaattct tcagcttaca
     1621 gagaaatatc gcatatgaaa tttgctcctt ttataccact gcttccattg gccggtttcc
     1681 tgatcaatgg cttgttgcgc aacaagctca gcaaggcggc tacaggcatt ataggcagtg
     1741 gggttgtact cgtggcgttt ctgctcagct ttatggtttt caatgccacc agggcaggcg
     1801 aaacgcaggt gtttcagttg tttgatttta tcaatgtaaa gaacctgaag atcgctttcg
     1861 agttccaggt ggatcagctt acatccctct tcctgatggt gatcactggc gtgggcttcc
     1921 ttatccatgt gtattctacc gcctacatgc atgaagaaag cgatgcgcat tttgcccgct
     1981 ac
//
LOCUS       DATIQF010000318         5419 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_35432, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000318 DATIQF010000000
VERSION     DATIQF010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5419)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5419)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5419
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35432"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            341..700
                     /locus_tag="VLL95_05265"
     CDS             341..700
                     /locus_tag="VLL95_05265"
                     /inference="COORDINATES: protein motif:HMM:NF039701.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6249 domain-containing protein"
                     /protein_id="HSR38303.1"
                     /translation="MSGPEVLIPITIFAGGFAMIFGITYLRTRQNLAMIDKGMNPKTS
                     AQRPAPYQNLKWGLLLIGAGIGLALAYIVCTHMLHEEENPALYFAFIGIGGGLGLVGS
                     YKAEKAWLDKQEAAGNA"
     gene            791..1165
                     /locus_tag="VLL95_05270"
     CDS             791..1165
                     /locus_tag="VLL95_05270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38304.1"
                     /translation="MKSLLTLLLVAVAGFTSLQAQSPNPKKLSGVTWLLTADEMVGLG
                     THSSLDKDIHLEFAADGKWSTTHPLLNNQAKGSWETDKKGKLVIKAGNKTAEIVSLSD
                     DKLVIVYNQGTSKVTWTWETAK"
     gene            complement(1246..3405)
                     /gene="feoB"
                     /locus_tag="VLL95_05275"
     CDS             complement(1246..3405)
                     /gene="feoB"
                     /locus_tag="VLL95_05275"
                     /inference="COORDINATES: protein motif:HMM:TIGR00437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015093 - ferrous iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HSR38305.1"
                     /translation="MPLPLAPFEMDSLASKHLHIALVGNPNSGKTSLFNALTGLNQKV
                     GNFPGVTVDKKTGHTRLSDQLVADIIDLPGTYSLYPKRSDEWVSYKVLLQQDADVKPD
                     MVVLVADASNLKRNLLFCSQILDLKIPVVVALTMMDLARQKGTQVNVKGLELELGVPV
                     VPVNPRKEKGIDQLKKSIELLSQNLGSWHPRPFLDAKALAPAPVEEVKKLIPSLSDYC
                     AIHYLINHEQFVLTDQLQQQIEQVEIDNQFNPTKTQAEEIMARYQRIRQVMQKNVVEA
                     DPLARKLFTDRLDNILLHRTWGYLILISVLFLLFQSIFWLASYPMDAIDWAFGALSSW
                     LGGVLPQVWWSDLLINGVVAGMGGIAVFIPQIMILFGLITMLEDSGYMARISFLTDKL
                     MRKVGLNGKSVMPMISGFACAVPAIMTARNIENTKERLLTILITPLMSCSARLPVFTI
                     LIALIIPNTYYFGFLSLQGLVMMALYLLGTVMALIVSYIAKWFIKIKEKSYFILELPV
                     YRAPRWKNVGQTMIEKAGIFVFDAGKIIMIISLVLWVLSTYGPPARMEALNTRYEQLR
                     QQPNADADALDKQYQSDHLANSFAGVLGKSIEPVIAPLGYDWKIGIALITSFAAREVF
                     VGTMATLYSVGGDVGEDDQTLRTKMQSAMRADGTKVYTVATGFSLMIFYLLAMQCMST
                     LAVVKRETKSWKWPMIQLAYMTILAYGMSFLFYQLLS"
     gene            3553..3906
                     /locus_tag="VLL95_05280"
     CDS             3553..3906
                     /locus_tag="VLL95_05280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38306.1"
                     /translation="MKRTMIALALLLGTGTMLCAQPPHAKAHGKRKHQSAYAGKHKQQ
                     FYYYPQYNVYYHPAGKRYACYRRGQWVWVTTPPTGLVLRVPDRREFYYDGFDVWAYEP
                     VRRYPRPSVQIQVNL"
     gene            complement(4280..4762)
                     /locus_tag="VLL95_05285"
     CDS             complement(4280..4762)
                     /locus_tag="VLL95_05285"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR38307.1"
                     /translation="MVTDQSIVIATATTPEDYAIAAELFKAYQQELGVDLCFQGFQQE
                     LENLPAMYGEPKGCLLLAKRGNEVLGCVALRPKEGNQCEMKRLYVTPAARGTGAGRLL
                     ATAIIDAGRRMGYAAMVLDTLETLRPALQLYASLGFETCAPYYHNPLPGVVYLQLPLR
                     "
     gene            complement(4752..4946)
                     /gene="xseB"
                     /locus_tag="VLL95_05290"
     CDS             complement(4752..4946)
                     /gene="xseB"
                     /locus_tag="VLL95_05290"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR01280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HSR38308.1"
                     /translation="MSKKTFDEAWQELEKLVAAIEDETLPLDELAEKVKAAKQLIRYC
                     EEKLRSIENDLKSVEDNDGD"
     gene            complement(4927..>5419)
                     /locus_tag="VLL95_05295"
     CDS             complement(4927..>5419)
                     /locus_tag="VLL95_05295"
                     /inference="COORDINATES: protein motif:HMM:NF014640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HSR38309.1"
                     /translation="TALHFESQLMLLKDQLSDTWLARKQEYAQQLKYWDSRMQHMVPF
                     RLQRRFDRLSDWQHLVERTARDEIKYHTDQLAEKAKRLQQQIQTTLKHHQLQLQHVEK
                     LVAQLSPASILNRGYAMVMQGTNIITDARQLDTSQPMQTVLKNQTITSDIKAINEHEQ
                     KDI"
BASE COUNT         1227 a         1375 c         1463 g         1354 t
ORIGIN      
        1 ggtgtttttc ttcgcgtctt ggcgtctttg cgagagattg ggatgagttg cacgcagaga
       61 cgcaaagtcg caaagtgggt gtttttcttc gcgtcttggc gtctttgcga gagaatggga
      121 tgagttgcac gcagaggcgc agagtcgcca agattttctt cgcgtccctc gtgccttggc
      181 ggtttagtct tttccccgcg ttccccgcgt ctttgcggta agcttaccct ttggtgctaa
      241 aaattttttt gcccaggctg taacctgccg gaatcagccg tagtcctatc ccatgtaaac
      301 acactgcaca cattgtaaaa cacttaaaaa actaaacact atgtctggtc ctgaagtact
      361 tatcccgatt accatttttg ccggcggctt tgccatgatc ttcggcatca cttacctgag
      421 aacccgccag aacctggcga tgattgacaa gggaatgaat cccaaaacct ccgcccagcg
      481 cccggcgccc tatcaaaacc tgaaatgggg cctgctgctg ataggagccg gcattggcct
      541 ggcactggct tacatagttt gcacacacat gctgcacgaa gaagagaatc ccgccttgta
      601 ttttgccttc atcggtatcg gcggtggcct gggcctggta ggcagctata aagccgaaaa
      661 agcctggctc gataagcagg aagctgctgg caatgcctga tgcgcctccc tgctgcaacc
      721 accagttttt gaatagaagc tggtggttat tgcattgtgt aactaccttt cacaccttca
      781 attttagatc atgaaatcat tgcttaccct gctgctggtg gctgttgccg ggtttaccag
      841 cctgcaagcc cagtcgccca atcctaaaaa gctttccggg gttacctggt tgctcaccgc
      901 cgatgagatg gttggcctgg gcacacacag ttcgctggac aaagacattc acctcgaatt
      961 tgccgccgat ggcaaatggt ccactaccca tccattgctg aacaaccaag ccaaaggcag
     1021 ttgggaaacc gataaaaaag gcaagctggt gataaaggcc ggcaacaaga ccgctgagat
     1081 cgtttctctc tcagacgata agctggtgat cgtgtacaac cagggaacca gtaaagtgac
     1141 atggacctgg gaaacagcca agtgactttt taatattgaa aatgaaaatc ccgatgcgtc
     1201 aacacatcgg gatttttttt gattcctgaa ttcggcaaag aaggatcagc tcagcaactg
     1261 gtagaacagg aagctcatgc cataggccag gatggtcata taggccagct gtatcatggg
     1321 ccatttccac gatttggttt cgcgttttac cacggccagc gtactcatgc attgcatggc
     1381 cagcaggtaa aagatcatga gcgaaaagcc tgtagccacg gtatatactt tggtgccatc
     1441 ggcccgcatg gccgattgca ttttggtgcg gagggtctgg tcgtcttcac ccacatcgcc
     1501 acctacgctg taaagggtag ccatggtgcc cacaaatact tcgcgggccg caaaggaggt
     1561 gataagggca atgccgattt tccagtcgta acccagcggg gcaatcaccg gttcaatgga
     1621 tttgcccagc acaccggcaa agctgttggc caggtggtcg gactggtatt gcttgtcgag
     1681 ggcatcggca tcggcattgg gctgctggcg caattgttcg tagcgggtat tcaacgcttc
     1741 catgcgggca ggcggaccgt aagtgctcag cacccacagc accaggctga tgatcatgat
     1801 gatcttaccg gcatcaaaca caaaaatgcc ggccttctca atcatggttt ggcctacgtt
     1861 tttccaacgt ggtgcccggt aaacaggaag ttcgaggatg aaatagcttt tctccttgat
     1921 cttgatgaac cacttggcga tgtacgaaac gatcaacgcc attacggtac ccagcaggta
     1981 cagcgccatc atcacgaggc cctgcaaact caggaaaccg aaatagtaag tgttgggaat
     2041 gatgagggca atgagaatgg tgaacaccgg caggcgggca ctgcaactca tgagcggggt
     2101 gatgagaatg gtgagcaggc gctccttggt gttctcgatg ttgcgggctg tcatgatggc
     2161 cggcactgca caggcaaatc cgctgatcat gggcatcacg cttttgccgt tgaggcccac
     2221 tttgcgcatc aacttgtcgg tgaggaaact gatgcgggcc atgtagccgc tgtcttccag
     2281 catggtgatg aggccaaaca ggatcatgat ctgcggaatg aacaccgcta tgccacccat
     2341 gcctgccact acaccgttga tgagcaggtc gctccaccac acttgcggca gcacgccacc
     2401 cagccagctg ctgagggcgc caaaagccca gtcgatggca tccatgggat aggaggccag
     2461 ccagaagatg ctttggaaca agaggaacaa tacgctgatg aggatgaggt agccccaggt
     2521 gcggtgcagt aaaatattat cgagccggtc ggtaaagagt ttgcgggcca gcgggtcggc
     2581 ttccaccacg tttttctgca tcacctgccg gatgcgctgg tagcgggcca tgatctcttc
     2641 ggcctgcgtt ttggtggggt tgaattggtt gtcgatctcc acctgttcaa tttgctgctg
     2701 caattggtcg gtcagcacaa attgctcatg gttaatgagg taatggatgg cgcaataatc
     2761 gctgagcgaa gggatcagtt ttttcacttc ctccaccggt gccggtgcca gtgctttggc
     2821 gtcgaggaag gggcggggat gccaggaacc caggttctgg ctcaggagtt caatggattt
     2881 tttcagttgg tcgatccctt tttccttgcg cggattcact ggtaccacgg gcacgcccag
     2941 ttccagttcc agccctttca cgttcacctg tgtgcccttc tggcgggcca ggtccatcat
     3001 ggtgagggcc accaccaccg gtattttcag gtcgaggatc tgcgaacaga aaagcaggtt
     3061 gcgtttcagg ttgctggcat cggccaccaa taccaccatg tcgggtttta catcggcgtc
     3121 ctgctgcagc agcaccttgt agctcaccca ttcgtcgctg cgtttgggat acaggctgta
     3181 ggtacccggc aggtcaatga tatcagccac cagttggtcg gacaggcggg tatgccccgt
     3241 cttcttgtca acggtaacgc cgggaaaatt gcccaccttt tggttaagcc ctgtgagggc
     3301 attgaagagg gatgttttcc cgctattggg attacccacc agtgctatat gtaaatgctt
     3361 gcttgccaat gaatccattt cgaagggcgc caaaggtaat ggcaaagcac attgccggtt
     3421 ttcgattgcg ggaaactgga cagggaaatc gggaattaga aacctcccgt ttagataatg
     3481 ttaagcatct gttggccggc gcattctggc atggtaatgg caaaattctc ttcggaccaa
     3541 atcaggaatt gtatgaagcg aaccatgata gcattggccc tgctgctggg aactggcact
     3601 atgttgtgcg cccaaccgcc acacgcaaaa gcacacggca aacgaaagca ccaatcagcc
     3661 tatgccggca agcataaaca acagttctat tattatcctc agtacaacgt gtattatcat
     3721 ccggcgggca aaagatatgc ctgctaccgt cgcggccaat gggtttgggt aaccacgccg
     3781 ccaaccgggc tggtattgcg ggtacccgac aggcgtgaat tttactacga tggttttgat
     3841 gtatgggcct atgaacccgt acgcaggtat ccacggccat cggtacaaat acaggtgaac
     3901 ctgtagggcg atccggcgga agtgcctgta tgagaaaata ctctttaggt gtagtgtccg
     3961 ttcatacctt ttcaatgatg cgaaccgtga aggacacaaa aaagccactc cttttggagt
     4021 ggctttggtg cgaggtgcag atggtgtggt gtggtaagtg aaaagagcct ttttgaaagg
     4081 cgttagagaa aaggtgtaga aaaactgcac cagaaagtcc gtttattgaa aggggagtag
     4141 tcagtgtgaa aacacctgca agacaggcaa gaagtgtggg cttttaccaa tcaatgccaa
     4201 ttcattgcaa aagtaaccct ggcgtttttc caggggcagg ggtgttttca ccctttctgt
     4261 acgggaaaaa cacggtaagc taccgaagcg gcagctgcag gtacaccacc ccgggtaaag
     4321 gattgtggta atagggagca caggtttcaa atcccagcga agcatacaat tgcagggcgg
     4381 gccgcaaagt ttccagtgtg tcgagcacca tggccgcgta gcccattctt ctgccggcgt
     4441 cgataatggc ggtggccagc aaacggcccg cgccggtacc ccgggcagcc ggtgttacat
     4501 acagccgctt catttcgcac tggttgcctt ctttggggcg cagtgccaca cagcccagta
     4561 cttcatttcc tcttttggcc aatagcaggc agcctttggg ttcgccatac atggccggca
     4621 ggttttccag ttcctgctga aatccctgga aacaaagatc gacccccaac tcctgctggt
     4681 aggctttgaa cagctctgcc gctattgcgt aatcctccgg cgttgttgcc gtggcaatga
     4741 ctatggattg atcagtcacc atcgttgtcc tccaccgatt tcagatcatt ttcaatggag
     4801 cgcaactttt cttcgcagta ccggatcagt tgtttggccg ctttcacttt ctcggccagt
     4861 tcatccagcg gtagcgtttc atcttctatg gctgccacca gtttttccag ttcctgccag
     4921 gcttcgtcaa atgtcttttt gctcatgttc gtttatcgct ttgatgtcac ttgtaatggt
     4981 ttgatttttc agcacggttt gcatgggttg gctggtatcc agttgccggg catcggtaat
     5041 gatgttagtg ccctgcatca ccatggcata gccccggttc aggatgctgg ccgggctgag
     5101 ctgtgccacc agtttttcaa cgtgctgcaa ttgcagttgg tggtgtttta gggtggtttg
     5161 tatttgctgc tgcaatcgtt ttgctttttc tgccagttga tcggtgtggt attttatttc
     5221 atcccgtgct gttctttcaa ccaggtgctg ccagtcgctc aggcggtcga agcgtcgctg
     5281 caggcggaaa ggcaccatgt gctgcatcct gctgtcccag tatttcagtt gttgtgcata
     5341 ctcctgtttc cgggccagcc aggtatcaga taactgatct ttcaacagca tcaattggct
     5401 ttcaaaatgc agcgcagtc
//
LOCUS       DATIQF010000319         5553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_278654,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000319 DATIQF010000000
VERSION     DATIQF010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5553
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278654"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..659
                     /locus_tag="VLL95_05300"
     CDS             <1..659
                     /locus_tag="VLL95_05300"
                     /inference="COORDINATES: protein motif:HMM:NF021507.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HSR38310.1"
                     /translation="GFFGGNQSYSTVKYSNEVLSPNIKSVNRNFNGSSTAYFPTRAAL
                     GLSSSGVPSATWIYHDGASNEIMYSYPAPSPNAEGKEPQPAPNASFPAGGSVWNVATA
                     IGGSPMLIHNNAIKITDKEELISINNTTSRPRSAIGFNSNGIMMLLAVEGDNATAGYS
                     GLNLLQLANLMQTFGLSHAMNLDGGGSTSLILNNQPTVRPGDSGVERPVVSAIILKRK
                     "
     gene            721..2022
                     /locus_tag="VLL95_05305"
     CDS             721..2022
                     /locus_tag="VLL95_05305"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR38311.1"
                     /translation="MNTAKHTKQHPLRWIPTTWFGMGLPNLVLGGTVVSLMYKSLGFS
                     DTQIAFWTGIIILPWSFKPLWGPFMELYKTKKFYIYTSQFMCGLLFALATLSLFTKAF
                     FPISVALFLITAFFGATQDIAADGMYLHELSPKLQAQYVGWQGTFYNFAKLFSNGGMV
                     FLAGVLIPTIGHTNAWATVMAVYAAVMMLLSFYSRSVLPSGTASTQVQSAAEVWTTLK
                     DVLTSFFQKKYIWAGILFIMLYRFAEGQAIKIMPLFLKAAKADGGLCLQESTLGLLTG
                     IYGTIAFVLGSLAAGYFVSNKGLNRKTLLLLCAFFNVPFATYAYLAITQTTNLYVIGS
                     SIALEHFGYGFGFIGVILFIMQQIAPGKYQMAHYAFGSALTYLGYTIASMISGIISDY
                     LGYKEFFIWVLIATIPAFLITWLVPLKPAPESPHPTPSPEE"
     gene            2019..2741
                     /locus_tag="VLL95_05310"
     CDS             2019..2741
                     /locus_tag="VLL95_05310"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HSR38312.1"
                     /translation="MMFIATIVHQSLALPACRKAGVTLFILLCMSRLSFGQAAYDTSY
                     RFYYYDQKLSMFESMPDTKDEIVWLGDSITDGCEWSELFPKHNTLNRGISSDNTFGVL
                     HRLHEVTRRQPKKIFLLIGINDIARNIPADVILANYQKIVQRIGQESPNTTLYIQTLL
                     PTNNSFSNFPNHQNKTDRVLAINNGLKAIAASNKTRLIDLYPAFLDAEQKLDKQYSND
                     GLHLLGAGYQHWKNILISNNAL"
     gene            2741..3697
                     /locus_tag="VLL95_05315"
     CDS             2741..3697
                     /locus_tag="VLL95_05315"
                     /inference="COORDINATES: protein motif:HMM:NF025841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4434 domain-containing protein"
                     /protein_id="HSR38313.1"
                     /translation="MSNLSLLPITGTFLDEISHDIPHQNWSRKEWEQDFEHMATMGID
                     TVILIRSGYRRFLTYPSKYLVNQGCYTPPVDLVQQFLELAEQFGMQFYFGLYDSGKYW
                     DTGNMQHEIDANRFVIDEVWNQYGHHAAFKGWYLSMEISRKTKGAIEAFDALGKQCKA
                     VSNNLPTLISPWIDGKKAVMAASGHITKEDAVSLQEHEKEWNEIFDGIHDAVDAVAFQ
                     DGHIDFHELEDFFRVNKQLADKYGLQCWTNAESFDRDMPIKFLPIKWEKLKLKLEAAA
                     RAGYHKGITFEFSHFMSPQSMYGSAGHLYNRYMESIGRHLTG"
     gene            3763..4950
                     /locus_tag="VLL95_05320"
     CDS             3763..4950
                     /locus_tag="VLL95_05320"
                     /EC_number="5.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF018877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AGE family epimerase/isomerase"
                     /protein_id="HSR38314.1"
                     /translation="MSFPHLQVEQAEIMKSYAMQYKDELLHHVVPFWETHSVDKEYGG
                     FFTCLRRDGSVYDTDKFMWLQGRQVWTFSMLYDKVEPRESWKKMAIHGADFMKKYGRD
                     AAGNWYFSLTREGKPLVQPYNIFSDCFAAMGFGALYKITGNEEYKQIAQNTFYNILRR
                     QHNWKGVYNKAYPGTRPLRNFSLPMILCNLGLELEHILGHSQLETLAKEVMHDVLEVF
                     YQPDLGHVMENVAPDGSFVDCFEGRLLNPGHTIEAMWFIIDLAKRFNRPELVEKATRI
                     MLSTLEHGWDEAYGGIFYFLDVKGNPPQQLEWDQKLWWVHIETLVGLAKAWKATGDER
                     CLAWFEKVHAYTWNHFKDEEYKEWFGYLNRQGDVLLDLKGGKWKGCFHIPRGLYQLWK
                     TLE"
     gene            5013..>5553
                     /locus_tag="VLL95_05325"
     CDS             5013..>5553
                     /locus_tag="VLL95_05325"
                     /inference="COORDINATES: protein motif:HMM:NF014675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 10 glycosylhydrolase"
                     /protein_id="HSR38315.1"
                     /translation="MKRILSCILVALLLWQPGFTQFPSVIRTAWVTNVGSDVLLSRNN
                     IKEAVRIAKQSGLNTLCVVTWNKGYTMYKSPTLKKYFGIDIDPVYKDRDPLKEFIEEA
                     HRENIKVIAWFEFGFASAYGEAGKHILDKYPHWAARDNAGKVLVENGFTWMNSFHPEV
                     QAFVSSLVYEVVQHYDVDGI"
BASE COUNT         1486 a         1444 c         1309 g         1314 t
ORIGIN      
        1 gtggtttttt tggcggcaac caatcctaca gcactgtcaa gtacagcaat gaagtattgt
       61 cgcccaacat caagtcagtc aacaggaact tcaacggatc cagcactgcc tatttcccca
      121 cccgggcagc gcttggcctc agcagcagcg gtgttccttc tgccacatgg atataccacg
      181 atggtgccag caatgaaatc atgtacagtt atcctgctcc cagcccgaat gcagaaggca
      241 aggaacccca accggcaccc aacgcttcct tccctgccgg cggttctgta tggaatgttg
      301 ccaccgccat tggtggatcg cccatgctca tccacaacaa tgccatcaag atcaccgaca
      361 aagaggaact catcagcatc aacaatacca cttccaggcc tcgctctgcc attggcttca
      421 acagcaatgg catcatgatg ctgctggcgg tggaaggcga taatgcaacg gcaggttaca
      481 gtggcttgaa cttattgcaa ctggccaacc tcatgcaaac ctttggattg tcgcatgcca
      541 tgaaccttga tggcggcggc tccacctccc tcatcctgaa caaccagcca accgtgaggc
      601 ccggcgacag tggtgtggaa agacccgtag tgagcgccat aatattgaaa agaaaatagc
      661 cggcatcata cattctaacg acattcaatc aatacttccg cagccacaac ctggacaaca
      721 ttgaatacag cgaaacatac aaagcaacat ccactgcgct ggatacccac cacctggttt
      781 ggtatgggat tgcctaacct ggtattgggc ggaacagtag tgtcgctcat gtacaagagc
      841 ctgggctttt ccgatacaca aatcgcattc tggaccggca tcatcatact gccctggagt
      901 ttcaaaccat tgtggggccc cttcatggag ttgtacaaaa ccaaaaagtt ttacatctac
      961 acttcgcaat tcatgtgcgg gctgttgttt gcgctggcca cattgtcgct gtttaccaaa
     1021 gccttctttc ccatttctgt agcactcttt ctcattaccg ccttttttgg cgccacgcag
     1081 gatattgccg ccgatggcat gtacctccat gaactgtcac ccaagttgca agcgcaatat
     1141 gtgggctggc aaggcacctt ctacaacttc gccaaattgt tttccaacgg cggcatggtg
     1201 tttttagccg gtgtgctcat tcccactatt ggccacacca acgcctgggc cacggtaatg
     1261 gcagtgtatg cagcggttat gatgttgctc agcttttaca gccgcagcgt gctgccttcc
     1321 ggcactgcca gcacacaagt gcaatcggct gccgaagtct ggaccaccct caaggatgta
     1381 ctcaccagct ttttccagaa aaagtacatc tgggcaggca tcctgttcat catgttgtat
     1441 cgctttgccg aagggcaggc catcaagatc atgcctttgt ttttaaaggc agcaaaagca
     1501 gatggcggtc tctgcttgca ggaatcaaca ctgggattac tcacaggcat ttatggcacc
     1561 attgcttttg tgctgggttc actggctgcc ggatattttg tttccaacaa aggacttaac
     1621 cgcaagaccc tgctgctgct ttgtgccttc ttcaatgtac cctttgccac ctatgcctac
     1681 ctcgccatta cccaaaccac caacctttac gtaattggct cttccattgc gctggagcat
     1741 tttggatatg gttttggttt tattggtgtc atccttttca tcatgcagca aatagcgccg
     1801 ggcaaatacc aaatggcaca ctatgcattt ggcagtgccc tcacctacct gggctatacc
     1861 atcgcttcca tgatcagtgg catcatcagc gattacctcg ggtacaaaga attttttata
     1921 tgggtactca ttgctaccat cccggcattc ctcattacct ggctggtgcc tctgaaaccc
     1981 gcacctgaat cacctcatcc cacaccatca cctgaagaat gatgttcata gcaaccatag
     2041 tacaccaatc cttagcgttg cctgcctgcc ggaaggcagg tgtcactctc ttcatcctgc
     2101 tgtgcatgtc ccggctttct tttggccagg cggcatacga tacttcgtac cggttctatt
     2161 actacgacca gaagctgagt atgttcgaat ccatgcccga caccaaggat gaaatagtat
     2221 ggctgggcga cagcattacc gatggatgtg agtggagcga gttgtttcca aagcacaaca
     2281 cacttaaccg cggcatcagc agcgacaata cgtttggcgt gctgcatcgg ctgcacgaag
     2341 taaccaggcg ccaacccaaa aagatattcc tcctcattgg catcaatgat attgcccgaa
     2401 acattcccgc tgatgtgatc ctcgccaact accagaagat tgtgcagcgc attgggcagg
     2461 agtcgcccaa caccacactc tacattcaaa cattgctgcc caccaacaat agtttcagca
     2521 attttcccaa tcatcaaaac aaaacagacc gggtactggc catcaacaac gggctgaaag
     2581 caatagccgc ctcgaataag actcggctca ttgatctgta ccctgccttt ttggatgccg
     2641 aacaaaagct cgacaagcaa tacagcaacg atgggctgca tttgttgggc gcaggatacc
     2701 aacactggaa aaacattttg atcagcaaca acgcactgta atgagcaact tatccctatt
     2761 acccatcacc ggcacttttc tcgatgagat cagccacgac attccgcacc agaactggag
     2821 ccggaaagaa tgggaacagg attttgagca tatggccacg atgggtatcg acaccgtcat
     2881 acttatacgc agcggatacc ggcgctttct tacctatccg tctaagtacc tggtgaacca
     2941 gggttgctac accccacctg ttgacctggt gcagcaattc ctggagttgg ccgaacaatt
     3001 tgggatgcag ttttacttcg ggctgtacga cagcggaaag tattgggata ccggcaacat
     3061 gcagcacgaa atagacgcca accgttttgt gattgacgag gtatggaatc aatacgggca
     3121 tcacgctgct ttcaaaggat ggtacctgag tatggaaatc agccgcaaaa ccaaaggcgc
     3181 cattgaagct tttgatgctt tgggcaaaca atgcaaagcg gtaagcaaca acctgcccac
     3241 cctcatctcc ccctggattg atggaaaaaa agcagtgatg gccgccagtg gccatatcac
     3301 caaggaagac gcggtaagcc tgcaggaaca tgaaaaagaa tggaacgaaa tatttgatgg
     3361 catccacgat gcggtggatg cagtggcctt ccaggatggg catatcgatt tccacgaact
     3421 cgaagatttt ttccgggtca acaaacagct ggctgacaaa tacggactgc agtgctggac
     3481 caatgcggag agctttgacc gcgacatgcc cattaagttt ttacccatca aatgggagaa
     3541 actgaaactg aagctggaag ccgcagcccg ggctgggtat cacaaaggca tcacgtttga
     3601 gttttcgcat ttcatgagcc cgcaaagtat gtatggctct gccgggcatt tgtacaaccg
     3661 ttacatggaa tccatcggcc gtcatctaac cggttaatac aacaataaca accatactag
     3721 ctaaataacc aacaaccaac taccaacttc aaaccattcc atatgtcttt tccccacctt
     3781 caagttgagc aggctgaaat aatgaagagc tatgccatgc aatacaagga tgagctgctc
     3841 caccatgttg ttcccttttg ggaaactcat tctgttgaca aggaatacgg aggcttcttt
     3901 acctgcctgc gtcgcgacgg atcggtgtat gataccgaca aattcatgtg gctgcaggga
     3961 aggcaggtgt ggacctttag catgctgtac gacaaagtag aacctcggga gtcatggaaa
     4021 aagatggcca ttcatggggc agatttcatg aagaaatatg gccgtgatgc agcaggcaac
     4081 tggtattttt cactcacacg ggaaggaaag ccgttggtgc agccgtacaa tattttcagc
     4141 gactgcttcg ctgccatggg gtttggggcc ttgtacaaaa tcacaggcaa tgaagaatac
     4201 aaacaaatag cacaaaatac tttctataat attctacgcc gccagcacaa ctggaaaggt
     4261 gtttacaaca aagcctaccc tggcacacgt ccgctgcgaa atttttcgct acccatgatc
     4321 ctgtgcaacc tggggcttga actggaacac attctggggc actcacaact ggaaacactg
     4381 gccaaagaag tgatgcacga tgtgctggaa gtattctacc agcctgacct cggccacgtg
     4441 atggaaaacg tggcgcccga tggcagtttt gttgactgct tcgaaggcag gctgctcaat
     4501 cccggccaca ccatcgaagc catgtggttc atcatcgacc tggccaaacg cttcaaccga
     4561 ccggaactgg tagagaaagc caccaggatt atgctgagca cgctggagca tggatgggat
     4621 gaagcctatg gtggtatatt ttatttcctc gatgtgaaag gcaatccacc ccaacaattg
     4681 gaatgggatc aaaaactgtg gtgggtgcac attgaaacat tggtaggcct ggccaaagcc
     4741 tggaaggcta ccggcgacga aagatgcctg gcatggtttg aaaaagtgca tgcctacacc
     4801 tggaatcact tcaaagacga agaatacaaa gaatggtttg gatacctcaa ccgccagggc
     4861 gatgttttgc tggacctgaa aggcggtaag tggaaaggct gctttcacat tccaaggggt
     4921 ttgtaccagc tatggaaaac tctggaataa cggttggttt cacagggtct tctttttgaa
     4981 atggaaccat caacttgtcg aagcaaaaca acatgaaaag aattctatcc tgcatattgg
     5041 tggccctgct gctttggcaa ccaggcttca ctcaatttcc atccgtcatt cgtacagcct
     5101 gggttaccaa tgtgggcagc gatgtcttgc ttagccgaaa caacatcaaa gaggcggtgc
     5161 gcatcgccaa acaaagtggc ctcaatacgc tttgtgtggt tacctggaac aaagggtaca
     5221 cgatgtacaa aagtcccacc ctgaagaaat attttggcat tgatatcgac ccggtgtaca
     5281 aagaccggga tccgctgaaa gaattcattg aagaagccca cagggaaaac atcaaagtga
     5341 ttgcatggtt tgagtttgga tttgccagtg cctatggtga ggcaggcaaa cacattcttg
     5401 acaagtatcc gcattgggcg gccagggaca acgcaggaaa ggtgctcgta gaaaatggtt
     5461 tcacctggat gaactctttc catcccgaag tgcaggcctt tgtaagcagc ctggtatatg
     5521 aagtggtgca gcactatgat gtggatggca tcc
//
LOCUS       DATIQF010000320         2236 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_157249,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000320 DATIQF010000000
VERSION     DATIQF010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157249"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1939
                     /locus_tag="VLL95_05330"
     CDS             <1..1939
                     /locus_tag="VLL95_05330"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HSR38316.1"
                     /translation="MDGTAMLWEAATGKMLFVLDYRQGLVADAVFSPDNSKVLLTGEF
                     NEPVLYDAATGKGVLVLDGHKAHVYTAAFSHDGTMIYTGARDGTAGLWSAVTGSFVRE
                     LKGHSNQITAAQFTSDDKMLVTTSQDRKTIVWSVETGAIVNTFTGHTDFIRTAALSPD
                     EKTVLTVSEDNSIKQWSLEKKALEFTRVELDATDYLVYTPAGYYSSSPDAAKKLHYVT
                     SDLQVITFDQLDLRFNRPDLVLSSFDNPDQTLIQSYNKAWQKRVRKLGVDTAQFGSLL
                     KAPQAIIANRASIAFEQTQPIITLQLTASDSSSVLQRYNVWVNDVPQFGVKGKTIDNQ
                     KSFRSTTNITLSNGVNRIEFSVVNANGTESFRQPLLVQYRPPTAITEKVYFIGIGMNQ
                     YANSQYNLTWSVKDIRDMAVALKKHYGNSITIDTLFDASVSREAVLGIRQKLMTLSEN
                     DKVILSYSGHGILSKDLDYFLSTYHINFEDPIVNGLPYDELESLMDGIKPRKKLMLID
                     ACHSGEVDKEEFGRIESMKGALQANGVSARSSIKVVKQKNLGMTNSFELMQQLFANVR
                     RGTGATIISAAGAMQYAQERGDLKNGVFTYCILDAFNSNPTLTVSQLKKIVVERVPAL
                     TNGLQKPTSRNETLNADWQVW"
     gene            complement(1953..>2236)
                     /locus_tag="VLL95_05335"
     CDS             complement(1953..>2236)
                     /locus_tag="VLL95_05335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38317.1"
                     /translation="INYYDDRQLAAAILPFAVRCMEQQLQWPVNREVCFCIGEGKNLQ
                     YLQQLNEEHQWFEHIEPLSHPRFIMQYKRMQMDDYIQQFREAYSKFGIR"
BASE COUNT          592 a          602 c          555 g          487 t
ORIGIN      
        1 aatggatggc acggccatgc tgtgggaagc ggcaacgggt aaaatgcttt ttgtgctgga
       61 ctaccgccag ggcctggtag ctgatgcggt tttcagcccc gacaacagca aggtattgct
      121 caccggcgaa ttcaacgagc ccgtgttgta cgatgccgcc accgggaaag gcgtcctggt
      181 attagatgga cacaaagccc atgtatacac cgcggctttc agccacgatg gtacaatgat
      241 ctacaccggc gcccgtgatg gcacggccgg cttgtggagt gcggttaccg gcagttttgt
      301 ccgggagctg aaaggacaca gtaaccaaat caccgccgca caatttacca gcgacgacaa
      361 aatgctcgtc accacatcgc aggacaggaa gaccattgtg tggtcagtag aaaccggggc
      421 tattgtcaac actttcaccg ggcatactga tttcatcaga acggcggccc ttagcccgga
      481 tgaaaagaca gtgctcactg tttcggaaga caacagcatc aaacagtgga gccttgaaaa
      541 gaaggcactc gaattcaccc gtgttgaact tgacgcgacg gattacctcg tgtacacccc
      601 cgctggctac tattccagct cgccggatgc cgccaaaaaa ctacactatg tgaccagcga
      661 tctgcaagtc atcacctttg atcaactcga tctccggttc aaccggcccg accttgtatt
      721 gtcctccttc gacaatcccg accagacact cattcaatca tacaacaaag cctggcaaaa
      781 gcgggtccgc aagcttggcg tggatacggc acagtttggt tcattgctca aggcgccaca
      841 agccatcatt gccaaccggg cgtccattgc ctttgaacag acccagccca tcatcacgct
      901 gcaactcacc gcctccgaca gcagcagcgt actccagcgt tacaatgtgt gggtaaacga
      961 tgtgccgcag tttggcgtaa aaggcaaaac catcgacaat caaaaatcat ttcgaagtac
     1021 tacaaacatc accttgtcca atggcgtcaa ccgcatcgaa ttttcggtgg tgaatgccaa
     1081 tggcaccgaa agcttccggc agcctttgct ggtacaatac aggccaccca ctgccatcac
     1141 agaaaaagtg tacttcatcg gtatcggcat gaaccaatat gccaacagtc aatacaacct
     1201 cacctggagt gtgaaggaca ttcgggatat ggctgtggca ttgaagaaac attacggcaa
     1261 cagcatcact attgatacgc tttttgatgc atcggttagc agggaagccg tactgggcat
     1321 caggcaaaaa ctcatgacgc tttccgaaaa cgacaaggtc atcctttcct actcggggca
     1381 tggcattctg agcaaagacc tcgactattt tctctccact taccacatca attttgaaga
     1441 ccccatcgtg aacggactgc cttatgatga actggaatcc ctcatggatg gcatcaagcc
     1501 ccggaaaaaa ctgatgctga tagatgcctg ccacagcggc gaagtagaca aagaagagtt
     1561 tggccgcatt gagtcgatga aaggcgcttt gcaggccaat ggcgtgagtg cccgcagcag
     1621 catcaaagtg gtgaagcaaa agaacctggg gatgaccaat agttttgagc tgatgcagca
     1681 attgtttgcc aatgtgcggc gtggtaccgg cgccaccatc atttccgccg caggtgccat
     1741 gcagtatgca caggaacgtg gcgatctgaa aaacggcgtg ttcacctatt gcatcctcga
     1801 tgccttcaac agcaacccga cgcttaccgt ttcacagctg aaaaagatcg tggtggaaag
     1861 agtgcccgct cttaccaatg gtttgcaaaa gcccacttcc cgaaatgaaa ccctgaacgc
     1921 agactggcag gtgtggtaga aacaagcaag cctcagcgaa tgccgaattt cgaatacgcc
     1981 tccctgaact gttggatgta atcgtccatc tgcatgcgtt tgtattgcat gatgaaccgg
     2041 ggatgagaca atggctctat gtgctcgaac cattggtgtt cttcgttcag ttgctgcagg
     2101 tactgcaggt ttttcccttc gccaatacaa aaacaaactt cacgattgac gggccattgc
     2161 aactgttgct ccatgcacct tacagcaaag ggcaggatgg cagcggccag ttgccggtcg
     2221 tcgtagtagt tgatgt
//
LOCUS       DATIQF010000321         3475 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_248342,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000321 DATIQF010000000
VERSION     DATIQF010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3475)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3475)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3475
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248342"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1170
                     /locus_tag="VLL95_05340"
     CDS             <1..1170
                     /locus_tag="VLL95_05340"
                     /inference="COORDINATES: protein motif:HMM:NF019869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HSR38318.1"
                     /translation="TTLVTGQDIIFFWVARMIMAGYEYKGKRPFKDVYFTGMVRDKQG
                     RKMSKQLGNSPDLLELIDRYGADAVRFGIMIASPAGTDLLFDESALEQGRNFNNKLWN
                     AMKLVKMWEGRQAESATQMADSQFAIDWFGSRLQQVKTELDSMMQQFRLSEALKTVYS
                     LIWDDFCSWYLEWVKPGFEQPISAEVYRKTVAYFDELLALLHPFMPFITEELYHQLAA
                     RTTDLCAQQYAMAGSPNAALLQQGELLKQVISTLREARAKNQLKPKESIRLHIQTSNQ
                     ASYESIATVLKKQVNASELLFTQEPVSNTVVVAIESEKFFLESEKEIDTGQLKEDLLK
                     DLDYQQKFLDSVNKKLANERFVQNAKPEVVDIERKKKADAEARIKAIEESLQALG"
     gene            1187..1684
                     /locus_tag="VLL95_05345"
     CDS             1187..1684
                     /locus_tag="VLL95_05345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38319.1"
                     /translation="MIYRHLKSILSLFVLALLSAGAMGQANKPVPKQKADSTQKRVVL
                     KAKFGPFGQGSDVLVSDFKVIVGGDLKVIDSVSGTAWKVVKYRLGWRRKELTDDYRTG
                     KKKILFNYTATDVYDSGKIPAAWQNEMKANIQATEEVSFESIFVQHPVTKKMMECPPM
                     VLKIK"
     gene            1693..2184
                     /locus_tag="VLL95_05350"
     CDS             1693..2184
                     /locus_tag="VLL95_05350"
                     /inference="COORDINATES: protein motif:HMM:NF024812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR38320.1"
                     /translation="MTIRPATNSDIPGIQMIAALTWPHAYADILTPRQVEYMLNMMYS
                     HATLQKQMLQEGHQFFVAESEDKMLGFAGCSPDEDRVWKLHKLYVLPFQQKSGLGKSL
                     LQIVEVVASKAGAEALVLNVNRQNNANAFYKHLGFEIDSVGDFDIGAGFFMNDYVMKK
                     QLV"
     gene            complement(2181..2585)
                     /locus_tag="VLL95_05355"
     CDS             complement(2181..2585)
                     /locus_tag="VLL95_05355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38321.1"
                     /translation="MNSRKWIGIGACVILAASTFMHWAWYPDIQKYFTGFFSEKNYYG
                     KPGIFLCLVAAIGIAGYLLHKVWLYRINLVAAALGMAYAIKSFLLFTSSYDGYEPQKQ
                     PGIYLMLVSSIVHVVFSMSSMNKATASRPQAD"
     gene            complement(2654..2727)
                     /locus_tag="VLL95_05360"
     tRNA            complement(2654..2727)
                     /locus_tag="VLL95_05360"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2693..2695),aa:Cys,seq:gca)
     gene            2936..>3475
                     /locus_tag="VLL95_05365"
     CDS             2936..>3475
                     /locus_tag="VLL95_05365"
                     /inference="COORDINATES: protein motif:HMM:NF013232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38322.1"
                     /translation="MRQIAESELIINSRGALYHIDLRPEELANTIITVGDPDRVPLVS
                     SHFDSIEVRRQHREFVSHTGFIGRKRITVISSGIGTDNIDIVLNELDACVNIDLASRT
                     VKPELTSLKIFRLGTCGALQGDIRVDSWVAGTHGLGIDNLLGYYQLDHTDEEIQMLQQ
                     FVLQTQLGQQFAQPYVSACS"
BASE COUNT          967 a          830 c          884 g          794 t
ORIGIN      
        1 accacgctgg ttaccgggca ggatatcatt ttcttttggg tggcccgcat gatcatggcc
       61 gggtacgagt acaaaggaaa acgcccgttc aaagatgtat acttcaccgg catggtgcgt
      121 gacaagcaag gccgcaaaat gagtaagcag ttgggtaaca gccccgacct gctggaactc
      181 atcgatcgtt acggcgccga tgccgtacga tttggtatca tgatcgcctc gcctgccggc
      241 accgatttgc tttttgatga aagtgcgctg gagcaaggcc gcaacttcaa taacaagttg
      301 tggaatgcca tgaaactggt gaagatgtgg gaaggccgcc aggctgaaag tgccacgcag
      361 atggccgaca gccagtttgc catcgactgg tttggcagca ggctgcagca ggtgaaaaca
      421 gaactcgaca gcatgatgca gcagttcagg ttgagcgaag cattgaagac tgtatactca
      481 cttatttggg atgatttctg cagctggtac ctcgagtggg tgaagcccgg ctttgaacaa
      541 cccatcagtg cggaagtgta ccggaaaaca gtagcgtatt tcgatgaact cctggctttg
      601 ctccatccgt tcatgccatt tattaccgaa gaactctacc atcaactggc cgccaggacc
      661 actgaccttt gtgcccagca gtatgctatg gcaggcagtc ccaacgcggc tttattgcag
      721 cagggcgaac tgttgaaaca agtgatctca acccttcggg aagcccgtgc caaaaaccaa
      781 ttgaagccga aagaatcaat acggttgcac attcaaacca gcaaccaggc cagctacgaa
      841 agcattgcca cagtgcttaa aaagcaggtg aatgccagcg aattgctgtt cacccaggag
      901 ccggtttcca ataccgtggt ggtggccatt gagagtgaaa aattcttcct ggaatcagag
      961 aaggaaattg acaccggcca attgaaagaa gacctgctga aggacctcga ctaccagcag
     1021 aaattcctcg acagtgtgaa caagaaactg gccaacgaac gctttgtaca aaatgcaaag
     1081 cccgaagtgg tggacattga aagaaaaaag aaagccgacg ccgaagctcg catcaaagca
     1141 atagaagaaa gtttgcaagc gttaggttga cctgagaaac agcatcatga tttaccgcca
     1201 cctgaaatcc attctatccc tttttgtgct ggcattattg tctgctggcg ccatgggcca
     1261 ggccaataaa ccagtgccga agcaaaaagc tgacagcact caaaaacgag tggtgctcaa
     1321 ggcgaagttt ggtccatttg gccagggcag cgatgtgctg gtgagtgatt tcaaggtaat
     1381 tgttggtggt gatctcaaag tgatcgattc tgtgagcggt acggcatgga aggtggtgaa
     1441 ataccggctg ggctggcgtc gaaaggaatt gacagatgat tatcgtaccg gtaagaaaaa
     1501 gatccttttc aattacaccg ctaccgatgt gtatgattcc ggtaagatcc cggcggcatg
     1561 gcaaaacgaa atgaaggcca atattcaggc cactgaagaa gtgagctttg aatccatttt
     1621 tgtgcagcac ccggtgacga aaaaaatgat ggagtgccct cctatggtgc tgaagataaa
     1681 atagcgagta ccatgaccat caggcctgcc actaattctg atattcccgg cattcaaatg
     1741 atcgccgccc tcacctggcc acatgcttat gccgacatct taacgcccag gcaggtagaa
     1801 tacatgctga atatgatgta cagccatgcc acgctgcaaa aacaaatgtt gcaggaaggc
     1861 catcaatttt tcgtggcgga aagcgaggac aagatgctgg gatttgcagg ctgcagccct
     1921 gacgaagaca gggtttggaa attgcacaag ttgtacgtgc tgcccttcca gcaaaaaagc
     1981 gggctgggaa aatcgttatt acaaattgtg gaagtggttg cctctaaagc aggggctgaa
     2041 gcattggtgc tgaatgtgaa tcgccaaaac aatgcgaatg cattttacaa acacctgggt
     2101 tttgaaattg acagcgtcgg cgatttcgac atcggtgccg gcttcttcat gaacgactac
     2161 gtgatgaaga agcaactcgt ttagtcagcc tggggcctgc tggccgtcgc tttgttcatg
     2221 ctcgacatag aaaaaaccac atgcacaatg ctgctaacga gcatgaggta aatgcccggt
     2281 tgcttttgcg gctcataacc atcgtaagaa ctggtaaaca agaggaagga tttgatggcg
     2341 tatgccattc ccagggcggc agccaccagg ttgatgcggt acaaccaaac tttatggagc
     2401 aaataaccgg caatgccaat agcggctacc aggcaaagga aaatgccggg cttaccgtaa
     2461 tagttttttt cagaaaagaa gccggtgaag tatttctgga tatcggggta ccatgcccaa
     2521 tgcataaaag tggaagctgc cagaataaca caggcaccta ttccaatcca ttttctgctg
     2581 ttcatacgct tcaaaagttc aattcattaa caaatccaaa taaaaaatga ttaccagcgg
     2641 taatcatttt gggtggaggt accgagcgga ttcaaaccgc tgtaggagct tttgcagagc
     2701 tctgcctagt cactcggcca cggtaccttt tctgatgttc tgcgctctga aaaacccgtt
     2761 caggagcttc tcatttgcgc tgcgaaaata ggggaatccg tcattttgga aaattcaaaa
     2821 tatccattgc cgctttattc ggatattgca ggcgcaaata atagcaggcc attgccggca
     2881 acattggctt gcattgattc accctctgaa ccactgccac tgcaggatac agcacatgag
     2941 acagattgct gaaagcgaac tgattatcaa cagtcgcgga gccttatatc acatcgacct
     3001 ccgacccgaa gaactggcaa ataccattat taccgtaggc gaccctgacc gcgttccgtt
     3061 ggtttcctcg cacttcgatt ccatcgaagt gaggcgtcaa caccgggagt ttgtatcgca
     3121 taccggattc attggtcgca agcgcattac cgttatcagt tcaggcatcg gcaccgacaa
     3181 tatcgacatc gtgctgaacg aactggacgc ctgtgtgaat attgacctgg cctccagaac
     3241 cgtaaagccc gaactcactt ctctgaaaat tttccgcctc ggcacttgtg gtgccctgca
     3301 gggcgatata cgggtagaca gttgggtagc cggcacccat ggattgggta tcgacaacct
     3361 gctgggttac taccagttgg accataccga tgaagaaatt caaatgctgc agcaattcgt
     3421 gttgcaaaca caactgggcc agcaatttgc acagccttat gtttcggcct gcagc
//
LOCUS       DATIQF010000322         2135 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_248346,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000322 DATIQF010000000
VERSION     DATIQF010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2135
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248346"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(45..1061)
                     /locus_tag="VLL95_05370"
     CDS             complement(45..1061)
                     /locus_tag="VLL95_05370"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HSR38323.1"
                     /translation="MRFIRVASLLPALLLSAVLTAQQPVKNLVMEGGGIRGIAYIGAL
                     QVLDSAGQLQQLERVGGTSAGAIQACLLAVGYTPAEILQALQSTSFKQFNDGSFLAIP
                     GAVRLQKHMGWYKGEALTQWIAEKIAAKTGNPNISFQQLYDQRQSLGRVSLYITGTDL
                     SWQRLRVFSHETYPNMRIADAVRISASIPFYFQPNWIDSAGRCFSTNDSLSTRSLVVD
                     GGLLANYPLAIFDSSRYVNGDLPNHYQRNAATLGLQLEEPWIVDSPLVQSMRPYPIDN
                     NNTYLKSIYKLLVDKPVKDLERTVLISNLSLNPRIRKLPQKQVDQLLESGRQAARKFL
                     EQRH"
     gene            complement(1244..1576)
                     /locus_tag="VLL95_05375"
     CDS             complement(1244..1576)
                     /locus_tag="VLL95_05375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38324.1"
                     /translation="MKRTTTTLMLAALLGITALSTQAQKRDMKEDRHDRREDVRDRKE
                     DRKDRKEDKRDLKEDIRDAQHNGGRRDRLEDRYDRREDKRDLAEDRRDRKEDKRDRFE
                     NRMDRRRG"
     gene            1847..>2135
                     /locus_tag="VLL95_05380"
     CDS             1847..>2135
                     /locus_tag="VLL95_05380"
                     /inference="COORDINATES: protein motif:HMM:NF024977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR38325.1"
                     /translation="MPDIIQLLPDHIANQIAAGEVIQRPASAVKELMENAIDAGATDI
                     QLIVTDAGKGLVQVIDNGKGMSATDARMAFERHATSKIKTIEDLFSLRTMGF"
BASE COUNT          483 a          570 c          583 g          499 t
ORIGIN      
        1 aagcgtaagg aaacccctta cgcttttttt gatcagtcaa catgctagtg tcgttgttcc
       61 aggaactttc gggctgcttg ccggccactt tccaacaact gatccacctg cttctgcggc
      121 agtttgcgga tccgcgggtt cagcgacagg ttgctgatga gcacggtgcg ctccaggtct
      181 ttcaccggtt tgtccaccaa taatttgtaa atggatttga ggtaggtatt gttattgtca
      241 ataggatacg gccgcatgga ttgcaccagc ggagaatcaa cgatccaggg ctcttcgagc
      301 tgcaggccca gcgtggctgc attgcgttgg tagtggttgg gcaaatcgcc attcacatag
      361 cggctgctgt cgaagatggc cagcgggtaa ttggccagca agccgccatc taccaccagc
      421 gaacgggtcg acaaactatc gttggtactg aaacaccggc cggcactgtc gatccagttg
      481 ggctgaaagt aaaaagggat ggaggctgaa atgcggaccg catccgcaat gcgcatgttg
      541 ggatacgttt catgcgaaaa cacccgaagc cgttgccagc ttaaatccgt gccagtgata
      601 tacagcgaga cccggcccaa tgattggcgc tggtcataca actgctgaaa gctgatgttg
      661 gggttgcctg ttttggcggc aattttttct gctatccatt gggtgagcgc ctcgcccttg
      721 taccagccca tgtgcttttg caaacgcaca gcccccggga tggcgaggaa actgccgtcg
      781 ttgaactgct tgaaagaagt gctttgcaag gcttgcagta tttcggcggg tgtataccca
      841 accgccagca ggcaagcctg gatggcgcct gcggaagtac cgcccacccg ctccagctgc
      901 tgcagttggc cggcgctgtc caatacctgc agggcgccga tataggcaat gccccggatt
      961 ccaccgcctt ccatgacaag gttctttaca ggctgctgcg ctgtcaacac cgcactgagc
     1021 aaaagggccg gcaacaaact ggcaacacga ataaaacgca tgactgaaag gtaatggctg
     1081 ctatgcatgt gccggctgac cgccaacagc tcaacaaaaa aataacaaag cccaggcaac
     1141 atgcccgggc ttgcataatg ggtcgactgt aatttgaaat tatcctttag ggtagtatcc
     1201 aaaccattcc ttcgtacttc gtatctcgta cctcgtactt tccctatccc ctgcggcggt
     1261 ccatgcggtt ttcaaaacga tcacgtttgt cttcctttct gtcgcggcga tcttcggcaa
     1321 ggtcgcgttt gtcctcgcgg cggtcgtagc ggtcttcgag gcgatcgcga cggcccccgt
     1381 tgtgctgcgc atcgcgaatg tcttctttga gatcacgctt gtcctccttt ctgtctttgc
     1441 gatcttcctt tctgtctctc acatcttcac gacgatcgtg gcggtcttct ttcatatcac
     1501 gtttttgagc ctgtgtggac agggcagtaa tgccgagcaa agcggcgagc attagggtag
     1561 tggtagtgcg cttcatggtg attggttttt gtgataaaga gacggggttg ggcgaagatg
     1621 gtttaatgga gggttgaaaa atggcagggc cttttggatg aaagacgacg gaccacggac
     1681 gacagaccac agaggatgaa caaagggcta ccgattgcag atactgcatt cgggtttcaa
     1741 gaggcattaa gcccggcagc ctgattcttg cactcggccc ctacgaaaag ggctttgcac
     1801 tatgcgctat ctcctatttt tgccgccata gaggagatcc cgcagcgtgc ccgatattat
     1861 tcaactactg cccgaccaca tagccaacca gatagccgcc ggtgaagtga tacagcgccc
     1921 cgccagtgcc gtaaaggaac tgatggaaaa cgccattgac gccggtgcca ccgatataca
     1981 actgatagtg accgatgccg gcaaagggct ggtgcaggtg atagacaacg gcaaaggcat
     2041 gagcgccacc gatgcccgca tggcttttga gcggcatgcc accagcaaga tcaaaaccat
     2101 tgaagacctc ttcagcctgc gcaccatggg ctttc
//
LOCUS       DATIQF010000323         1629 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_5201, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000323 DATIQF010000000
VERSION     DATIQF010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5201"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..210
                     /locus_tag="VLL95_05385"
     CDS             <1..210
                     /locus_tag="VLL95_05385"
                     /inference="COORDINATES: protein motif:HMM:NF013468.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HSR38326.1"
                     /translation="TLGHPVLAASVPADQPEDLADHDLIFENFERLVDIVVDGGVGGI
                     VPSTVVDLTGDEPTLIRQGKGEWEE"
     gene            complement(341..946)
                     /locus_tag="VLL95_05390"
     CDS             complement(341..946)
                     /locus_tag="VLL95_05390"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: protein motif:HMM:NF000595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HSR38327.1"
                     /translation="MLQSFYKAGIIEAGIDEAGRGCYAGPVFAAAVVLPPDFHHPRLN
                     DSKQLKEKDRDLLRPIIEAEAIAWSVQAVEVEVIDRINILQATYRAMHAAVDNLATRP
                     ELLLVDGKWFKPVKGIAHQCFIKGDGTYASIAAASILAKTHRDEYMQQLHESFPHYNW
                     RQNKGYGTLDHRRAIEQFGICRHHRKSFNILPSQLDIPFKS"
     gene            complement(950..>1629)
                     /locus_tag="VLL95_05395"
     CDS             complement(950..>1629)
                     /locus_tag="VLL95_05395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38328.1"
                     /translation="LFQSYLANGASFPTITYNSYSRRDAVQQDYLWQLDADWRWQKSG
                     AGAFWKQARFQTGLVYSQEMIPGQSLGTYNDVLITGGFERRVNLYSNDMQYNLLGLQL
                     GWKQNWHPFRKAQHLALYTGFSWTNLWTLSNDITQSNYYLHTTSTTPGGFQVIEETNT
                     TAPDLPGKHFRWQRWQIPLGISYRFGKHIGVAAEFNAGIYRFVKEGQRGRYEEAHGFS
                     TRIGYYF"
BASE COUNT          383 a          391 c          449 g          406 t
ORIGIN      
        1 acgctggggc acccggtgct ggctgcttcc gtgcccgccg atcagcccga agacctggcc
       61 gatcacgatc tcatttttga aaacttcgaa cgcctggtag acattgtggt ggatggcggc
      121 gttggcggca ttgttccctc cacagtggtg gaccttaccg gtgacgaacc tacgttgatc
      181 aggcagggga aaggggaatg ggaggaatga tgaatgcgga atggggaatt aggaattagg
      241 aactgggaat tgggaatagc agaatgacaa ataagaaata aggaataaga aagtgggaag
      301 tggaaatgcg tgctgcgaat tgatgggcac gttttgctga tcaggatttg aaagggatat
      361 ccaattggga agggaggata ttgaaactct ttcggtgatg ccggcaaatg ccgaattgct
      421 caatggccct gcgatgatct aaggtgccat accccttgtt ttgacgccag ttgtaatgcg
      481 gaaaggattc atgcaattgc tgcatgtatt catcgcggtg cgttttggcc aggatgctgg
      541 ctgccgcgat gctggcgtaa gtgccatcgc ctttgatgaa acactggtgg gcaatcccct
      601 ttaccggctt gaaccatttg ccatctacca gcagcagttc ggggcgggtg gccaggttgt
      661 caacggccgc atgcatggca cggtaggtag cctgcaggat gttgatgcgg tcaatcactt
      721 ccacctccac ggcctgcaca ctccaggcaa tggcttcggc ctcaatgatg gggcgcagca
      781 ggtcgcggtc tttttctttg agttgcttgc tgtcgttcag gcggggatga tgaaagtcgg
      841 gcggcaacac cacggcggcc gcaaacacgg ggcccgcata gcagcctctt cccgcttcgt
      901 cgatgccggc ttcaatgatg cccgctttgt aaaatgattg caacacgttt caaaagtaat
      961 agccgatgcg tgtagaaaag ccatgcgctt cttcataccg gcctcgctgc ccttctttta
     1021 caaaacggta gatgcctgcg ttaaattctg ctgcaacacc aatgtgtttt ccaaatcgat
     1081 aagaaatgcc caaaggtatt tgccaacgct gccatcgaaa atgcttgccg ggcaaatccg
     1141 gtgctgttgt gtttgtttct tcaatcacct gaaagcctcc cggagtagtg ctggtggtat
     1201 gcaaataata attggattgc gtgatgtcgt tgctaagcgt ccacaggttt gtccatgaga
     1261 agcctgtgta caaagccaga tgctgtgctt ttctaaaagg atgccagttt tgtttccaac
     1321 ccaattgaag gcccaggaga ttgtactgca tatcattgct gtacaggttg acccttcttt
     1381 caaacccacc ggtaatcagc acatcattat aggtacccaa gctttggccg gggatcatct
     1441 cctggctgta cacgaggccg gtttgaaaac gggcctgctt ccaaaacgct cctgccccac
     1501 ttttttgcca gcgccaatcc gcatccaatt gccacaggta atcctgttgc actgcatccc
     1561 ttcgtgagta actattgtaa gtgatagtgg gaaatgaagc accattggcg aggtagctct
     1621 gaaacaggt
//
LOCUS       DATIQF010000324         4040 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_187773,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000324 DATIQF010000000
VERSION     DATIQF010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4040
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187773"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1921
                     /locus_tag="VLL95_05400"
     CDS             <1..1921
                     /locus_tag="VLL95_05400"
                     /inference="COORDINATES: protein motif:HMM:NF018899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HSR38329.1"
                     /translation="KNNLDPYFRFKLFSSAKFNNTKYTEDKEKILDYYNASGFRDAKI
                     EKDTVYYNTKGDLNVEVLVNEGRQYYFGNMIFRGNTKFSDSLLQVLIGIKKGDIYNKE
                     TLDKALGKQMSADGGTDISALYMDDGYLFFRAEATETAVYNDTIDHEIRLFEGPQAII
                     KNVNITGNDKTKEYVIRRELRTVPGEKFSRTDLIRSQREIANLNYFNQEKIGINPVPD
                     MNDGTVDINYSVEEKSSDQLELSAGWGGGIGLTGTLGVSFNNFSVKNIFRAETWDPLP
                     SGDGQKLSLRLQSNGRAFRSYNFSFTEPWLGGKKRNSFTMSFFDTKFSNAFNPATGQY
                     ERFPSSFIRTIGGSVSLGRQLRWPDDFFSLVTAVSYSNYYLKDYLFFEDFRNGVSNNL
                     NIRIGLQRSSIDQPLFPRSGSNFMASLQFTPPWSRLGVTDPKAITTPEERFKWIEYHK
                     WRFTGEWYVPLSRPHGEERNKQVVMKLAAKFGFLGRYNSNLEISPFERFQVGDAGMSN
                     QFSMIGFDVIAHRGYPVYQTSDPRVNPDQQGASRYFTIFNKYVAEVRYPLSLNPSSTI
                     FALGFFEAANGWFSMKEYNPFRLRRSVGLGMRFFLPMFGLLGFDYGIGLDRLQPGNGL
                     KGATKFTFMLGVEPE"
     gene            2076..2594
                     /locus_tag="VLL95_05405"
     CDS             2076..2594
                     /locus_tag="VLL95_05405"
                     /inference="COORDINATES: protein motif:HMM:NF015871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HSR38330.1"
                     /translation="MKKILASLLVLVISATAALAQRYAIIDTRYILDKMPEYAEAKKK
                     LDATANMWQKEIDNKQAELDNMYRNFEAEKVMLSAELIKKREDELFNKEKEVRDLQKK
                     RFGFEGDLFAERQKLIKPIQDRVYTAVQKLAVARSYDFILDKSEGITVIFADPKLDRS
                     EDVLRELGVKSN"
     gene            2630..3196
                     /locus_tag="VLL95_05410"
     CDS             2630..3196
                     /locus_tag="VLL95_05410"
                     /inference="COORDINATES: protein motif:HMM:NF015871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HSR38331.1"
                     /translation="MKKVLVAAIAILGMVLAGSEEASAQQKFGYFDLEYVLSVMPGVE
                     KVDSMMQAFERDSLNSEYQFELAELQRMDSTLKADSAKMPARLYQQRQQEQAQRFFKL
                     QNWQQYSQQVMQAKQQELLGPYYQKILEAFRQVKDEGKYTYIFKADSLYDAPQGDNLV
                     PLVAKKLNIKLPTAPGAGGAAPGGQRSN"
     gene            complement(3260..3733)
                     /locus_tag="VLL95_05415"
     CDS             complement(3260..3733)
                     /locus_tag="VLL95_05415"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HSR38332.1"
                     /translation="MWLLSTRPSTSGSLFLVVDKSDNTITLYDAVDWIIQWPCTFGSK
                     DLSDKLYQGDRRTPEGKFRIVSKYPHQKWNKFIRIDYPTKADYDKFAERKRQGLIPAH
                     AKIGGDIGIHGTWPHEDWAVEMLQPWTLGCISMKNEDVTELYGMIKVGTPIIIRP"
BASE COUNT         1087 a          979 c          978 g          996 t
ORIGIN      
        1 caaaaacaac ctcgatcctt atttcaggtt caagttgttc agcagcgcca aattcaacaa
       61 caccaagtac accgaagaca aagagaagat cctcgactac tataatgcca gcggtttccg
      121 cgacgccaaa attgagaagg atactgttta ctataacacc aaaggcgact tgaacgttga
      181 ggtgctggta aacgagggcc gccaatacta ttttggcaac atgatattca ggggaaatac
      241 caaattctct gattccctct tgcaggtgct tatcggtatc aagaagggcg acatctacaa
      301 caaagagacc cttgacaaag ccctgggcaa acaaatgagt gcagacggtg gcaccgacat
      361 cagtgcgctt tacatggatg atggctattt gttcttcagg gccgaagcaa cagaaacggc
      421 tgtttacaac gacaccatcg atcacgaaat tcgcctgttt gaagggcctc aagccatcat
      481 taagaacgta aacattaccg gcaacgacaa gacgaaggaa tacgtgatcc ggagggaatt
      541 gcgtacagtt cccggcgaaa aattcagccg taccgacctc atccgttctc agcgtgaaat
      601 cgccaacctc aactacttca accaggaaaa gatcgggatc aaccctgtac ccgacatgaa
      661 tgatggtacg gtggacatca actattcggt agaagaaaag tcaagcgacc agttggaatt
      721 gtcggccggt tggggtggtg gcatcggatt gacgggcacc ctgggtgtat ccttcaacaa
      781 cttctcggtc aagaatattt tcagggccga aacctgggat cctttgccca gtggtgatgg
      841 ccaaaaactg agcctgcgct tgcagagcaa tggccgggcc ttccgcagct acaatttcag
      901 ctttaccgaa ccttggctcg gtggcaaaaa gagaaactct tttaccatga gtttcttcga
      961 tacaaaattc tcgaatgctt tcaaccctgc taccgggcag tatgaacgtt ttccgtcttc
     1021 ctttatcaga accattgggg gttcagtgtc actgggtcgc cagttgagat ggcccgatga
     1081 cttcttcagc ctggtaacgg cagtgagcta ttcgaattac tatcttaagg actacctgtt
     1141 ctttgaggac ttccgcaatg gtgtcagcaa caaccttaac attcgtatcg gcctgcagcg
     1201 tagcagcatc gaccagcctt tgtttccccg aagtggttcc aattttatgg cttcattgca
     1261 gtttacgcca ccttggagcc ggctgggtgt aaccgatcct aaagccatta ccactccgga
     1321 ggaaaggttc aaatggattg agtaccacaa atggcgcttt acgggtgaat ggtatgttcc
     1381 tttgagccgt ccgcatggcg aagagcgtaa caagcaggtg gttatgaagc tggccgctaa
     1441 atttggcttc ctcggccgat acaactccaa cctggaaata tcaccattcg aacgattcca
     1501 ggtgggtgat gccggcatga gcaaccaatt ctcgatgatt ggttttgatg tgattgccca
     1561 caggggttac ccagtatacc aaaccagcga tcccagggtc aaccccgacc agcagggagc
     1621 cagccggtat ttcaccattt tcaataagta cgtggccgaa gtgcgttacc ccctgagcct
     1681 caatccgagc agtaccattt ttgcccttgg cttctttgaa gcggccaacg gttggttcag
     1741 catgaaagaa tacaacccgt tccgccttcg tcgaagtgtg ggtctgggta tgcgtttctt
     1801 ccttcccatg tttggtctgc ttggctttga ctacggtatc ggtctcgaca ggcttcaacc
     1861 cggcaatggc ctgaagggtg ccaccaaatt cacctttatg ctgggcgtag aaccagaata
     1921 atcctgaaat cgccgggatc actccttcaa ttaacgcatt gctaaccatt ttccccgttc
     1981 aaaaacgtac cacaaacaat ccttatatca gcccggtctt atttaacatc cgctgtaaaa
     2041 accgatattt aatttcatag caaacaacaa acgccatgaa aaagatactt gcctcgcttc
     2101 tcgttctggt cataagtgca acagctgctt tggcgcagcg ttatgccatt attgataccc
     2161 gctacatact cgacaaaatg ccggagtatg ctgaagcgaa gaaaaagctg gatgcaaccg
     2221 ccaatatgtg gcaaaaagag attgacaaca agcaagctga gctggacaac atgtaccgca
     2281 actttgaagc ggaaaaggtg atgctctcag cagaattgat aaagaagcgg gaagatgaac
     2341 tttttaataa ggaaaaggaa gtaagggacc ttcagaaaaa gcgctttggt tttgaaggcg
     2401 atttgtttgc cgaacggcag aaactgatca agcccatcca ggaccgggtg tacaccgcgg
     2461 tgcagaagct tgccgtggcc cgatcctatg attttatact ggataaaagt gaaggcatta
     2521 ctgttatatt tgccgacccc aaactggacc ggagcgaaga tgtgcttcgt gaattgggcg
     2581 tgaaatcgaa ttaataattc tttcaattaa actaaacgta caagaacaaa tgaaaaaagt
     2641 tttggtggct gcaatcgcca tccttggaat ggtgctggcc ggtagcgagg aagccagtgc
     2701 tcaacaaaag ttcggctact tcgacctgga atatgtactg agcgtgatgc ctggtgtaga
     2761 gaaagtagat tcgatgatgc aggcttttga gcgtgattct ctcaattctg agtaccagtt
     2821 tgaactggct gaactgcaac gcatggacag cacactgaag gctgacagcg ccaagatgcc
     2881 cgcccgcctg taccagcagc gccagcagga gcaagcacag cgcttcttca agttgcagaa
     2941 ctggcagcag tacagccagc aggtaatgca ggccaaacag caggaactgc tcgggcccta
     3001 ttaccaaaaa atccttgaag ctttccgcca ggtaaaagat gaaggaaaat acacttacat
     3061 ctttaaggcc gattcgttgt acgatgcgcc tcagggcgac aacctggtac ccctggtggc
     3121 caagaaactg aacatcaaac tgccgacagc ccccggagct ggaggtgctg caccaggtgg
     3181 ccaaaggagc aactaaacaa tcgtcataat accattgaca aaaaagccga ctccatttgg
     3241 ggtcggcttt ttgttgtgac taaggcctga tgatgattgg ggtgcccact tttatcatgc
     3301 catataattc agttacgtct tcattcttca tactgatgca acccaatgtc catggctgta
     3361 acatttcgac cgcccagtct tcgtgcggcc aggtaccatg tatgccaata tcgccgccta
     3421 tcttggcatg ggcaggtata agtccttgcc ttttccgctc ggcaaactta tcatagtcgg
     3481 ctttggtggg gtagtcaatc cggatgaact tgttccactt ctgatgcggg tacttgctta
     3541 cgatcctgaa cttgccttca ggcgttcgcc tgtcgccctg gtatagttta tcactcaaat
     3601 ctttgctgcc aaaggtgcac ggccattgga tgatccagtc cactgcatcg tacagggtga
     3661 tggtattatc gcttttgtcc accaccagga atagggatcc gctggtactg ggccgggtac
     3721 ttaaaagcca catgggtagt aagcaaaatg ttgctgcaag cttcacacgc attgttggta
     3781 cgtttgcttg tgaaacgatc aaatttggct ccacattaca atggagttgt ccttaacctt
     3841 gcaattagga tttcattaga ttttgcagtg aacgtgaagg tagccagcgc aattgccgtc
     3901 tgatgaaata gcaattcaga attatgcgaa ggaaatggag ttggttgttg gtaccgggcg
     3961 tgatgctttt gtgtcatgca tgggcgtttg ccaatccttc caatgatgaa ttgtacaagc
     4021 ttcagatccc gaagaccagt
//
LOCUS       DATIQF010000325         2868 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_218164,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000325 DATIQF010000000
VERSION     DATIQF010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2868
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218164"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..710)
                     /locus_tag="VLL95_05420"
     CDS             complement(<1..710)
                     /locus_tag="VLL95_05420"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HSR38333.1"
                     /translation="MMIQRVLSIVVIAFTISLFSCKHSNDGLFEEMTGANIHFVNTLS
                     ETDTFNVFKYRNFYNGGGVATGDLNNDGLPEIFFTANQGPNKLFLNKGNWQFEDISEK
                     AGFGNKAQWSTGVVFVDINSDGWLDIYVCNAGQMLDSNLRRNQLFINNKNLTFTEKAA
                     EYGLDNNGYTTQASFFDYDLDGDLDCFIANNSPIPVNTLNYANSRNVPAEQAPVAAFL
                     RGGGDHLYRNDDGRFKEVT"
     gene            complement(822..2420)
                     /locus_tag="VLL95_05425"
     CDS             complement(822..2420)
                     /locus_tag="VLL95_05425"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSR38334.1"
                     /translation="MFKKQLIPVAAASMMLATACAKLDPKLKDPLSIAPPTSSGAPTP
                     PSINAVYEQLNQLVGQYGYQALQEHSTDELMGPTRGTDWDDFGTWRRLHLHTWAGDHN
                     QINDVWNGLNCALFQTTLVAESSTGLVKAEGQFLRGFFRFLVGDLYGQVQARPASAAA
                     AVIPNVIQRKDVIDSIIAEVEAAVPNLPSFNGTNRAQATKEAAYVLLAKAYLNRAVFK
                     ADPTKPEGPYAFSSADMNKVIQYCDLVTANAAIKLNSYYWDNFKWDNGAKSTENIFVR
                     KNGADSRAGNGTNTVWVTCMGWHYNQRPSGWNGFTTLSDFYDSFQDGDDRKSSNIPGY
                     TDKVGSNAGFLVGQAFGPVNPSNPKQPGSIGNPVGPLFDRSGNPLVFTRNASIFFNGE
                     ASGIRTNKFPMDPATINDGGWGSGNEFPFFRLADVRLMKAEAILRGGTATGGETPKSI
                     VNAIQTARKGKVDGTVGLDQVLAERGRELYLEGWRRNDLVRFGKFNDPVQERPDKSAG
                     TKVVYPIPLIALSSNPNLKQNAGY"
     gene            complement(2452..>2868)
                     /locus_tag="VLL95_05430"
     CDS             complement(2452..>2868)
                     /locus_tag="VLL95_05430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38335.1"
                     /translation="LSVFVNTIRGFHVYNNTANALFLKGSLRNARNVTREVGFGPEHP
                     FNPGSVSTRFLEKGDFVRLSNVNLNYNVPLKANGVIKSLAFYASGQNLALWTDYSGID
                     PEVNVDKNINGIPSRGFDYTQYPRPRIITFGATIGL"
BASE COUNT          701 a          668 c          763 g          736 t
ORIGIN      
        1 gtcacttctt tgaagcggcc gtcatcgttg cggtacaggt gatcgccgcc gccccgcaga
       61 aaggcggcta caggcgcctg ctcagccggt acgttgcggc tgttggcgta gttcagcgtg
      121 tttaccggga tgggactgtt gttggcgata aagcaatcga ggtcgccatc caggtcgtaa
      181 tcgaaaaagg atgcctgcgt ggtatatcca ttattgtcca ggccatactc ggccgctttc
      241 tcggtaaaag tgaggttctt gttgttgatg aaaagttggt tgcggcgcag gttggaatca
      301 agcatttgcc ctgcattgca tacgtaaata tcgagccacc catcgctgtt gatgtcgaca
      361 aatactactc cggtactcca ttgtgctttg ttgccaaaac ctgctttttc tgaaatgtct
      421 tcaaactgcc agttgccctt gttgaggaac aacttattgg gcccctggtt ggcggtgaag
      481 aagatttcag ggagtccgtc gttgttcaga tcgccagtgg ctacgcctcc accgttgtag
      541 aaattacggt acttgaaaac attgaaggta tctgtttcag aaagggtatt gacgaagtgg
      601 atattcgcac cggtcatttc ctcgaaaagc ccgtcattgc tgtgtttgca ggaaaataag
      661 gagatggtga aagcaatcac gacaatgctc aatacacgtt gtatcatcat gcgttaaaaa
      721 tagggatttg aggcttggag tgactaatca gtgctgcaag tgattggtaa aaaaaaggct
      781 gccgaatgcg gcagcctttt tttatgaagt ggtttttaat attagtaacc agcgttctgc
      841 ttcaggttgg ggtttgaaga caacgcgatc agaggaatgg ggtaaaccac tttggtgcca
      901 gctgacttgt caggacgctc ctgaacagga tcattgaact tgccaaagcg aaccaggtca
      961 ttccttctcc agccttcgag gtagagttca cgacctcttt cagccagtac ttgatccagt
     1021 cctacagtgc catccacttt acccttacgg gcagtttgaa tagcattcac gatagacttg
     1081 ggcgtttcgc cgccagtagc agtaccaccg cggagaatgg cttcagcctt catcaggcga
     1141 acatcagcca agcggaagaa ggggaattcg ttgccgctgc cccaaccacc atcgttgatg
     1201 gttgcaggat ccatcgggaa tttgttggta cggataccac ttgcttcacc gttgaagaag
     1261 atagaggcat tacgagtgaa caccagcggg ttaccactac ggtcaaacaa tggaccaaca
     1321 gggtttccaa tgctgccggg ttgcttggga ttggaggggt taacagggcc aaaagcctgg
     1381 cctacgagga agcctgcatt tgaacctacc ttatcggtat aaccagggat attggaagat
     1441 ttgcgatcgt caccatcctg gaagctgtcg tagaaatcag aaagcgtggt gaatccgttc
     1501 cagccagaag gacgctggtt gtagtgccag cccatgcagg ttacccatac agtgttggtt
     1561 ccgttaccgg cacggctgtc agcaccattc ttacgaacaa agatgttctc tgtggatttg
     1621 gcaccgttgt cccacttaaa gttgtcccag tagtagctgt tcagcttgat agcggcattg
     1681 gcagtaacca aatcgcaata ttggatcacc ttattcatgt cagctgaaga aaaggcataa
     1741 ggaccttccg gctttgttgg gtcggcctta aacactgccc tgttgaggta ggccttggcc
     1801 agcaacacgt atgctgcctc tttggtagcc tgtgccctgt tggttccgtt gaagcttggc
     1861 aggttcggaa ctgcagcttc tacttcagca atgatgctgt cgataacatc tttacgctgg
     1921 ataacattag gaattacagc ggcagcagca ctggcaggac gagcttgcac ttgtccgtac
     1981 aggtcgccaa ccaggaaacg gaagaaacca cggaggaatt gaccttcagc ctttaccagg
     2041 cctgtagagg attcagcaac cagggtggtt tggaacaaag cgcagttcag gccattccat
     2101 acgtcattga tttggttgtg gtcgccggcc caggtatgca ggtgcaggcg gcgccaggta
     2161 ccaaagtcgt cccagtcagt accacgggtg ggtcccatca gttcatctgt tgagtgctcc
     2221 tgaagcgcct ggtagccata ctggcccacc agttggttca gttgctcata aaccgcgtta
     2281 atagatggcg gagtcggagc gcctgatgaa gtaggaggcg ctattgaaag aggatctttc
     2341 agttttgggt ccagcttcgc acaggctgtt gccagcatca tactggcagc ggccaccggt
     2401 atcaattgtt ttttaaacat aagttccagt ttttattgtg aattttcata gttacagtcc
     2461 gatggtagca ccaaaagtaa tgatacgtgg cctggggtat tgtgtatagt caaaaccacg
     2521 tgaaggaata ccgttgatgt tcttgtcaac gttaacctca ggatcaatac cactgtagtc
     2581 agtccacagg gccaggttct gaccagaagc atagaatgcc aggctcttga tcactccatt
     2641 ggccttcagc ggcacattgt agttgaggtt tacgtttgac aggcgcacaa aatctccttt
     2701 ttcgaggaag cgggttgaaa cgctaccagg gttaaaggga tgttcaggac caaaaccaac
     2761 ttcgcgggtc acgttacgag cgttgcgcaa gctgcctttc aggaagaggg cgttggccgt
     2821 attgttataa acatggaaac cacgaattgt gttcacaaat acactaag
//
LOCUS       DATIQF010000326         2306 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_35592, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000326 DATIQF010000000
VERSION     DATIQF010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35592"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(22..1248)
                     /locus_tag="VLL95_05435"
     CDS             complement(22..1248)
                     /locus_tag="VLL95_05435"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSR38336.1"
                     /translation="MTTLFAWRYFKAKKTTNAINIISWISVVAIAVVTGALVVVLSVF
                     NGFEDLVKGLYSDFYSDISIVKSKGKWFEADAAFMNRLKEMDGVQLAEPVVEERAILI
                     DGEDKSIVWMKGVKPDYQESSGVPRHIIRGSFETGTKEKPALVVGAGVENALQIAAGE
                     SLYPVTTYLPNRLAGNTSDVTEALHSSNLYVTGSFSIQQEFDNQYAFTNIDFMRFMLD
                     LKQAEVNRIELVLSANADAQKVANALRNQLGKEFEVKTRYEQNQSLFVAMQVEKLIIF
                     GVAFLILLIAAFNIMSTLTMMVLEKQLDISVLFAMGLNGARVGQIFLKVGGILAFFGS
                     AIGFVIGLGICLAQQQFHLVKLGGQSFIIDYYPVAIRGTDLLLVGTIVLAITLLAGWL
                     PALRARRMAAIVPRSE"
     gene            complement(1285..1677)
                     /gene="rbfA"
                     /locus_tag="VLL95_05440"
     CDS             complement(1285..1677)
                     /gene="rbfA"
                     /locus_tag="VLL95_05440"
                     /inference="COORDINATES: protein motif:HMM:TIGR00082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HSR38337.1"
                     /translation="MEESKRQKQVGALLIEELSDIFRRLGFGVVGKGMISISAVKVTP
                     DLLEARIYLSFFQIDDKEEMLQKIKERNWEVKKELAARVGKQLRRMPELHYFLDDTLD
                     YVYKMEDLFTKIHKEEKEKGEDHEEQKA"
     gene            1782..>2306
                     /locus_tag="VLL95_05445"
     CDS             1782..>2306
                     /locus_tag="VLL95_05445"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HSR38338.1"
                     /translation="MKKYARVFKLLRGHTWQLVAYFVCIVLSTVFSILSLGMLMPFLE
                     LIFVGKSGALATAGAANKGLQDWLSQTMQDYANAHSPMSLLMLICGLMLTSIVLKNLF
                     LYLSYYILNPLKNKIVTDMRSMMYDKILQLPIGYFTEKRKGDLMSRITNDIAEVEGSV
                     IGTLEGWIRDPLQIL"
BASE COUNT          579 a          622 c          484 g          621 t
ORIGIN      
        1 ccggcttttt ttatggctgc attattccga ccgtggcaca atcgccgcca ttcgtcttgc
       61 ccgcagcgcc ggcagccaac ccgccaaaag cgtaatggca aggacaatgg ttccgaccaa
      121 caataaatca gtcccccgaa tggccacggg ataataatca atgatgaagc tctgccctcc
      181 cagctttacc aaatgaaact gctgctgcgc caggcaaata ccgaggccaa tgacgaaacc
      241 gatggcgctg ccgaagaagg ccaggatacc acccaccttc aaaaatatct gtccaaccct
      301 ggcaccattg agccccatgg caaacaacac agaaatgtcg agttgctttt ccaataccat
      361 catggtaagg gtactcatga tgttgaaggc tgcgataagc agaatgagaa aggcaactcc
      421 aaaaatgata agcttttcca cctgcatggc cacaaacaac gactgattct gttcatacct
      481 cgttttcact tcgaactcct tacccaactg gttgcgcaag gcattggcca ccttttgcgc
      541 atcggcattt gcactcagca ccaattctat cctgttcact tctgcctgct tcaggtcaag
      601 cataaagcgc atgaaatcga tattggtaaa agcatattgg ttatcgaatt cctgctgtat
      661 ggaaaaactg ccggttacat ataagttgga gctgtgcagg gcttccgtta catcactggt
      721 gttgcctgcc aaacgattgg gcaaatacgt ggtaacgggg tataacgatt cgcctgccgc
      781 tatttgcagt gcattttcca cgccagcccc aaccacgagg gccggttttt ctttggttcc
      841 ggtttcgaat gaaccacgaa taatgtgccg gggaacacca ctgctttctt ggtaatcggg
      901 cttcacgccc ttcatccaca caatgctctt gtcctcgcca tcaatcagaa tggcacgttc
      961 ctccacaacc ggctctgcca attgcacacc atccatctcc ttcaggcgat tcatgaaagc
     1021 cgcatcggct tcaaaccact ttccttttga ttttacaatg ctgatgtcgg aataaaaatc
     1081 ggaatacagt cctttgacca ggtcttcaaa cccgttgaaa acactcagaa ctaccaccaa
     1141 tgcaccggta accaccgcaa tagccaccac actaatccag ctgattatgt tgatggcatt
     1201 ggttgttttt ttggctttga agtatcgcca ggcaaataag gttgtcaatg caggcaaagg
     1261 tttggtaagc agtacacaac gaatttaggc cttctgctct tcgtggtctt cccccttctc
     1321 cttttcttct ttgtggatct tcgtgaaaag gtcttccatt ttgtatacgt aatcgagggt
     1381 atcgtcgagg aaataatgca actcaggcat gcggcgcagt tgcttgccca ccctggccgc
     1441 cagttctttc tttacttccc agttgcgttc ttttattttt tgaagcattt cttccttgtc
     1501 gtcaatttga aaaaagctga ggtaaatacg tgcctccagc aggtcgggtg tcactttcac
     1561 tgccgatatg gatatcatgc cttttcccac cacgccaaag ccaaggcggc ggaaaatatc
     1621 gctcaactct tcgatcagca aggcgcctac ctgcttctgc cttttgctct cttccatagc
     1681 tttttctcct tttaattata acattacccc tgcaaaaccc atccaaaagg ggcgctgtaa
     1741 aagtagttac tttgccgcca gaaattctgt taatcaccag catgaagaag tacgccaggg
     1801 ttttcaagtt gcttcggggt catacctggc aactcgttgc ctattttgtt tgcattgttt
     1861 taagcaccgt tttttccatc ctctcgctgg gtatgctcat gcctttcctc gagctcattt
     1921 ttgtgggcaa aagcggggca ctggccacag ccggcgctgc aaacaaagga ttacaagact
     1981 ggctgtcgca aaccatgcag gattatgcca atgcgcattc gcccatgtct ttgctgatgc
     2041 tcatttgcgg tttaatgctc accagtatcg tcctcaaaaa cctgttcctc tatttatcgt
     2101 attacatcct caaccccctc aagaacaaga tcgtaactga tatgcgatcg atgatgtacg
     2161 ataagatcct gcagcttccc attggctatt tcaccgaaaa aaggaaaggt gacctgatga
     2221 gccgcatcac gaatgacatt gccgaagtag aaggcagtgt gattggcaca ctcgaaggct
     2281 ggatcaggga tcccttgcaa atactc
//
LOCUS       DATIQF010000327         2539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_278840,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000327 DATIQF010000000
VERSION     DATIQF010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2539
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278840"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1082
                     /locus_tag="VLL95_05450"
     CDS             <1..1082
                     /locus_tag="VLL95_05450"
                     /inference="COORDINATES: protein motif:HMM:NF025253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098024 - virus tail, fiber [Evidence
                     IEA];
                     GO_process: GO:0019062 - virion attachment to host cell
                     [Evidence IEA];
                     GO_process: GO:0046718 - viral entry into host cell
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tail fiber domain-containing protein"
                     /protein_id="HSR38339.1"
                     /translation="NSLVLGSIAGLNGASSSVKVGIGTTQPQHPLDVKAASAAPLIML
                     ENTTAIGETALRLRSNWPSDGSSNTTITLGLEGSKFNIYADNSISLLTLNPVQAGDFS
                     QGIRMGINNFSPQAPLHVKSSSTSTLARNITFFNSAAATIGANPSWTGTVTGYFEGNV
                     VSTISFIAAANNIFSDERIKDIIGPSNGADDLDKLRRIAITRYRYKDKWQMGNAVQTK
                     VIAQQVKEVLPEAVSQIKNFIPDLLQEAAIVARGNNSITIQLKEGKQLKAGARLKCFD
                     AGGNELLANVLSTKDNTCTLDVVITGDKIFVYGTEVNDFNVVDYDAIAMLNVSATQEL
                     LRRLEKAEQTIVKLEALLKKLTKDQ"
     gene            complement(1157..1606)
                     /locus_tag="VLL95_05455"
     CDS             complement(1157..1606)
                     /locus_tag="VLL95_05455"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HSR38340.1"
                     /translation="MKMFMLLALAHVALATCYGQQPAKPLTKEKFHFGKQQDENAGYA
                     QAVKVGNTIYVSGTVSITIDSVGITRLYQAIERTLTHYGAGMQHVVKENLYTTDIEAM
                     KANNQYRLPFYKNDFPAATWVQISRLYMPEAKLEVEVTAVLPDRPDE"
     gene            complement(1862..2152)
                     /locus_tag="VLL95_05460"
     CDS             complement(1862..2152)
                     /locus_tag="VLL95_05460"
                     /inference="COORDINATES: protein motif:HMM:NF020917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043231 - intracellular membrane-bounded
                     organelle [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDGSH iron-sulfur domain-containing protein"
                     /protein_id="HSR38341.1"
                     /translation="MDYKKLPVPAKCEPAAVMVEAGKTYAWCTCGLSEKQPFCDAAHK
                     QCWTEDENGEVQKHFVSLKFTAEKTEEVWLCQCKQTKTPPFCDSSHRNVKCD"
     gene            complement(2204..>2539)
                     /locus_tag="VLL95_05465"
     CDS             complement(2204..>2539)
                     /locus_tag="VLL95_05465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38342.1"
                     /translation="NKADRPDADRFVHNLKQMLAPSFAHKQIPVEVVKTIAHQREGIK
                     ELSDTIDTVLQQTKTNDRQYWLLAEKAWHLIQMQRMKGVSKAMLKKEIADAVAAGELN
                     LYSFVKRFY"
BASE COUNT          654 a          603 c          617 g          665 t
ORIGIN      
        1 acaacagcct ggtgttgggc agcattgccg gcttaaatgg tgctagctct agtgtgaagg
       61 ttggtattgg taccacccag ccgcagcacc cgctggatgt aaaagctgct tcagccgccc
      121 cattgatcat gttagaaaat accacggcga ttggagagac tgccctcagg cttcgctcta
      181 actggccctc agacggcagc tccaacacaa cgattaccct gggactggaa ggatcaaaat
      241 ttaatattta cgccgacaat agtatcagcc tcctcacact aaatcccgtt caagcaggtg
      301 acttttcaca gggcatcaga atgggtatta acaacttcag tccgcaggcg ccactgcacg
      361 taaaaagcag ctccacctct acccttgcca ggaatatcac cttcttcaat tctgctgctg
      421 ccaccatagg cgctaatccc agttggactg gtacggtaac cggctacttt gaaggcaatg
      481 tggtgagcac catttccttc attgctgcag ccaacaatat tttctccgac gaaaggatca
      541 aagacatcat cggcccatcc aatggggctg atgacctgga caaactgcgc cgcattgcca
      601 tcacccgcta ccgttacaaa gacaaatggc agatgggcaa tgccgtgcaa accaaggtga
      661 ttgctcaaca ggtaaaggag gtgctgcccg aagcggtttc gcagataaaa aatttcattc
      721 ccgatttgct gcaggaagcc gcaatcgttg cccgcggcaa caacagcatc actattcagt
      781 tgaaggaagg aaaacaactc aaagccgggg caagactaaa atgctttgat gcaggtggta
      841 acgagctgct ggccaatgtg ctgtcaacaa aggacaacac ctgcaccctt gatgtagtga
      901 tcactggtga caaaatattt gtgtatggta ctgaggtcaa cgattttaat gtggtagact
      961 acgatgccat tgccatgctc aacgtaagcg ccacgcagga attgctgcgg cgtttggaaa
     1021 aagcagaaca aaccattgtg aaactggaag ccttgctcaa aaagctcaca aaggatcaat
     1081 agcaaataat ccatattgtc cgggtacaac tttgttgttt ttgtgagggg agccatgcaa
     1141 cacggcactg ggaaatttat tcatcaggtc gatctggcaa cactgctgtc acctccactt
     1201 ccaactttgc ttcaggcatg tacagcctgc tgatctgcac ccaggtggca gcgggaaaat
     1261 cattcttgta aaacggaagc ctgtattggt tgttcgcctt catggcttcg atatcggtag
     1321 tgtacaggtt ttcctttacc acatgctgca tgcctgcacc gtagtgcgtc agggtacgct
     1381 caatagcttg gtacaaacgg gtaatgccca ccgaatcgat agtgatgctt accgtgcctg
     1441 aaacataaat ggtgttgccc acttttactg cctgggcata gccggcattt tcatcctgct
     1501 gtttgccaaa atggaacttt tctttggtca aaggttttgc cggttgttgg ccatagcaag
     1561 tggccagggc cacatgggcc agtgccaaaa gcatgaacat tttcatagtg tcatatttgg
     1621 agaaaaaaat agtccaaata ccagaagagt gaataccgtt cctgtatttg atggcggcaa
     1681 aggataaaaa gaaagccttt cgtttgtgaa aggcttttta gtccatttga taagtgacaa
     1741 ttgcaggagg ttgtgtgagc aaacaggatg aggtgtgtga tttgataatg caaacatacc
     1801 gggtaagaac ctgtgggaca atcacacata catgtgaaat tgttgcggcg ataacggcgg
     1861 gttagtcaca cttcacattt cggtgcgagc tgtcgcagaa gggaggtgtt ttggtttgct
     1921 tgcattggca cagccatact tcttcggttt tttctgcagt gaacttgagg cttacaaaat
     1981 gcttctgcac ttctccattt tcatcttcgg tccagcattg cttgtgagca gcatcgcaaa
     2041 agggttgctt ctcgctgagg ccacaggtgc accaggcata agttttgccg gcttccacca
     2101 ttacagcagc gggttcacat ttggccggaa caggcagttt cttgtaatcc atattttaat
     2161 cgcgttttaa ataaacaaca actgttgctg caatggcaac aggtcagtag aatcttttta
     2221 caaacgaata aagattcagt tcgcccgcag ccacagcatc ggcaatttct tttttcagca
     2281 tcgccttgct cacccctttc atgcgttgca tttgtatgag atgccaggcc ttttcggcca
     2341 acagccagta ttggcggtcg ttggttttgg tttgctgcag tactgtatca attgtatccg
     2401 acaattcttt gatgccttcc cgctggtggg caatggtctt caccacttca acaggtattt
     2461 gcttgtgggc gaaggagggc gccagcattt gtttgaggtt gtgtacaaag cgatccgcat
     2521 cgggacggtc ggctttgtt
//
LOCUS       DATIQF010000328         1534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_35599, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000328 DATIQF010000000
VERSION     DATIQF010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35599"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1035
                     /locus_tag="VLL95_05470"
     CDS             <1..1035
                     /locus_tag="VLL95_05470"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR04122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response
                     exonuclease"
                     /protein_id="HSR38343.1"
                     /translation="CPAGDFYIDPWRGVERAIITHALSDHARWGSRYYLCHHHSKPLL
                     QLRLGAANNIQSIGWNEPVLMNGVKVSLHPAGHIIGSSQIRIEYKGEVWVITGDYKLE
                     IDGLSGAWEPVKCHTFLTESTFGLPVYQWQPQSAIYASMQQWVQRNQQEKLSSVLVAY
                     SLGKAQRILQPLSEVSDRIFVHGAIWNTHETLLQAGWNLPTVQRLTPDTPKEMLKGAV
                     IIAPPSAEDSPWMRRFAPYSTGVCSGWMQVRGNARRRSVDAGFALSDHCDWPSLLKAV
                     EATGAQKVFVTHGFQSVLSRYLNEKGIESEEVKTAFGTEEDKEVNEIGIEPPTELNSE
                     DPPEAISSST"
     gene            1122..>1534
                     /locus_tag="VLL95_05475"
     CDS             1122..>1534
                     /locus_tag="VLL95_05475"
                     /inference="COORDINATES: protein motif:HMM:NF016553.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38344.1"
                     /translation="MSFQSFAHTVFSIGSATKTNSKLAALANYFEQAPDADKVWTIAI
                     FSGRRPKRLVKSSLLHQWCAELANIPIWLFEESYHTVGDLAETIALCIPQQQKQTDTF
                     EDLTLAELIHRFLALQQATEEERKQFITASWQQLS"
BASE COUNT          409 a          415 c          386 g          324 t
ORIGIN      
        1 tgcccggccg gcgatttcta catcgatccc tggcggggtg tggagcgtgc catcatcacg
       61 catgccctca gcgaccatgc ccggtggggc agccgatatt atttgtgcca tcaccacagc
      121 aaaccattgc tgcagttgcg actgggcgct gccaacaaca tccaaagtat tggctggaat
      181 gaacccgtgt tgatgaatgg ggtgaaagtg tcgctgcacc ctgcaggcca tatcattggc
      241 agttcgcaaa taaggattga atacaaaggg gaggtttggg tgataaccgg cgactacaag
      301 ttggaaatcg acggcctgag tggcgcctgg gagcccgtga agtgtcatac gttcctcaca
      361 gaaagcactt tcggattgcc ggtttaccaa tggcagccac agtcggctat ttatgccagc
      421 atgcaacaat gggtgcaacg caaccagcag gaaaaattga gcagtgtact ggttgcctac
      481 agcctgggca aggctcaacg cattttgcaa ccgcttagcg aagtgagcga ccgcattttt
      541 gtgcacggcg ccatctggaa cacacacgaa acgctgctgc aagccggttg gaatttgcca
      601 accgtacaac gccttacacc cgacacaccc aaagaaatgc tgaaaggcgc agtgatcata
      661 gcgccgccca gtgcggaaga cagcccgtgg atgcgacgct ttgcacctta cagcacaggc
      721 gtttgcagcg gctggatgca ggtacgcggc aatgcccgcc ggcgcagcgt ggacgccggc
      781 tttgcgctga gcgatcattg cgactggcca tcgctgctaa aggccgtaga ggccactggt
      841 gcccaaaaag tattcgtgac acatggcttt caaagtgtgc tgagccgata cctcaatgaa
      901 aaaggcattg aaagcgagga agtaaaaaca gccttcggaa ctgaggaaga caaagaggta
      961 aatgaaatcg gtatagaacc gcccacagaa ctcaattctg aagatccgcc ggaagcaata
     1021 tcctcctcca cttaatcttt cactccttcc tatttctatt cattcactta ttaacttatt
     1081 gacctattga ccaattcact tattgccaaa ttctctccaa cttgtctttt caatcattcg
     1141 cccataccgt tttcagcatc ggaagcgcca ccaaaaccaa cagcaaactg gcggcactgg
     1201 cgaattattt tgaacaggca ccagacgcag ataaagtgtg gacgattgcc atcttcagtg
     1261 gccgccgtcc caaacgcctg gtgaaaagca gcctgctaca ccagtggtgt gccgaactgg
     1321 ccaatatccc aatatggttg ttcgaagaaa gctaccacac cgtgggcgac ctggccgaaa
     1381 ccattgcgct gtgcataccg caacaacaaa aacaaacaga cactttcgag gaccttacgc
     1441 ttgctgagct gatccatcgc ttcctggcat tgcagcaggc aactgaagaa gaaagaaagc
     1501 agttcatcac agcgagttgg cagcaacttt cttt
//
LOCUS       DATIQF010000329         6563 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_187802,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000329 DATIQF010000000
VERSION     DATIQF010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6563
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187802"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1035
                     /locus_tag="VLL95_05480"
     CDS             <1..1035
                     /locus_tag="VLL95_05480"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSR38345.1"
                     /translation="FGVPWQASVGVSVQQLLFQPDVFIGLKARSSAMELRENQLAVTQ
                     DSVKSNVLQAYYGVLIAERGLEFATESRDRLAKLYKDQEQLFKSGFIERLDLDKTKVN
                     LNNINTQLTQLNNLIAVSYAGLKFALGLPQTDSLVLTDTLSMEQLRRDVFSLEDGFKY
                     ENRPEVKTLLSSQDLLELQVRRYKMNAYPTVAAYWNMQTNAQRQRFDFYDTKDRWFFS
                     NLAGLSINVPIMDGWQRRNRVKQAEYSLQKSRNTLNQFKQVVDLQIVSARSQFTNAME
                     ALNSQIDNKDLAERVYAATKVKYERGLGSSFEVLQTETALQEALSNYYQALYNGVIAK
                     INYMRALGKL"
     gene            1079..2233
                     /locus_tag="VLL95_05485"
     CDS             1079..2233
                     /locus_tag="VLL95_05485"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSR38346.1"
                     /translation="MKTIANQLLLIALATSLLIACGQNKKEAPGSLGEKKAELAKLQQ
                     EAAALAEKIGKLETEIAKLDTSAKTEKGKLIAIDTIALQDFSHFIELQGKVDADNISY
                     VTPRGGPGQVQAIYVVKGQMVKKGQPILKLDDRIIRQQKEQLLTQLNFAKDILKRRED
                     LWKQNIGSEVELLSARNNVTQIERQLSTLNEQMEMTNVTAEVSGVVDDVMVKVGEIFQ
                     GGPQIRIVNTSSLKVVTDVPENYLSKVGKGSKVEVNVPDINKSFNSSISFVSASINPA
                     SRGFSTEAKLPSDAALKPNQIALVRILDYAAPNVVVVPINVIQTDEKGKFVFVATKEN
                     GEMTARKKPVTIGMVQGDRVEIKSGLSQGETLITEGFQGLYDGQKVSTSL"
     gene            2319..5945
                     /locus_tag="VLL95_05490"
     CDS             2319..5945
                     /locus_tag="VLL95_05490"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSR38347.1"
                     /translation="MTALEKLHAELAKIKEFKPTTWAVKNKTSMYLMMVFITIAGVFQ
                     FVTLPKEQFPDIVVPTVYVQTVYVGNSPKDIENLVTRPIEKQLKGLSGVKVKKITSTS
                     LQDFSAIIIEFDTDVNVDAAVQKVKDAVDKAKKDLPTNLTQLPVVQEISFSEFPIMYV
                     NVSGPYDQVKLKEYADRLKDRIEELGQITRVDLVGAPEREIQVNVDNFKMQSAGITFS
                     DIENAIARENADISGGLLDVGTMKRNLQVKGQFKSAFDLNNVVVRNNRGASIYLKDIA
                     EIKDTIKERESFARLGDNKTTSQPVVTLNIIKRSGENLIEAADGVKVIVDDLVKSEFP
                     KDLNVVITGDQSKKTKASFEELVNTIVLGFIFVLLVLMFFMGVTNAFFVALSVPLSMF
                     VAFLFLPIGNVIVGTEITLNFIVLFALLFGLGIIVDDAIVVIENTHRIFAEGKGMIRS
                     DMAARYAAGEVFVPVLTGTLTTLAPFFPLLFWPGLIGKFMIYLPAMLIFTLTASLIVA
                     FIMNPVFAVDFMNHEEHQAKKKSDVFRSKMFWTLLVGGVLFDIIGLFAGGGLWYFFGN
                     LMIFLALMAIVNSYLLDGMIHSFQSRFLPGLMRQYEKLLRWALAGTRPVWLVIALFGV
                     LVGSFMIFGAAAGSGRVPVVFFPQSDPNIVYVYLKLPTGTDVRHTDSVISSLETKVYK
                     VLGMENGQKNEMVESIITNVAVGASDPNSGDRSTRAELARIQVSFVEFEKREGKSTMP
                     YLTKIREAMQGIPGSEISVAQEANGPPTQPPVNIEVTSENFESLTRTAVALKNFLDTN
                     KVAGIEELKMDIDLQNPEITVSVDRERALIEGISTAQVGMEIRTALFGKEVSKLKDEE
                     DEYKIQLRSNELQRKNLSDLLNMRITFRDFNTGQIKQVPISAVAKIDLTSTYGSIKRK
                     NLKRVITLYSNVLSGYTPTAVNAELAKVIQNFRQKPDDVSIAQTGEGEQQAEAASFLT
                     KALLIALALILIILVLQFNSVSKPIIILTEIIFSVIGVLLGFAITGMEVSVVMTGIGI
                     VGLAGIVVKNGILVIEFADELRSRGMRTREALIQAGKTRIIPVLLTAVAAILGLIPLA
                     VGLNINFITMFEQLNPHLWFGGDNAAFWKPLSWTIIFGLIFAFFMTLIVVPAMYLMAE
                     RLRRPMRRFFGGKWISFVAIPPFTVLFLLLVIAAAIIHRFKVSARRRRAVGKVDETWI
                     GSWF"
     gene            6117..>6563
                     /locus_tag="VLL95_05495"
     CDS             6117..>6563
                     /locus_tag="VLL95_05495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38348.1"
                     /translation="MATSKKSSKKKAAPAKKAAPKKVAKKAAPKKAAKKVVKKAAPKK
                     AAPKKAAKKAAPKKAAAKKVAKKAAPKKAAKKAAPKKPAAKKAAAPKKAASKKAAPKK
                     AAAKKAAPKKAAAKKAAPKKAAAKKAAPKKAAAKKPAKKAPKKAAPA"
BASE COUNT         1838 a         1659 c         1656 g         1410 t
ORIGIN      
        1 tttggcgtac cctggcaggc atcggtaggc gtttcagttc agcagctgct ttttcagcct
       61 gatgtattca ttggcctgaa ggcaagaagc tccgccatgg aactgagaga aaaccagctg
      121 gccgtaacgc aagacagtgt aaagtcgaat gtgctgcaag catactatgg cgtgctgata
      181 gccgaaagag gtcttgagtt tgccaccgag agccgcgacc gcctggccaa actgtacaaa
      241 gaccaggaac aactgttcaa aagcggtttc attgaaagac tggacctcga caaaaccaag
      301 gtgaacctca acaatatcaa cacgcagctt acccaactga acaaccttat tgcggtgagc
      361 tacgcaggtc tcaagtttgc gctgggactg ccgcaaactg attcgctggt gctcactgat
      421 accttatcga tggaacagtt gcgcagggat gtgttcagcc tcgaagatgg tttcaagtat
      481 gaaaaccgcc cggaagtaaa gacgctgctt tcctcgcagg atttgctcga attgcaggtg
      541 cgccgctaca agatgaacgc ttaccccacg gtagccgcct actggaacat gcaaaccaat
      601 gcgcagcgcc agcgcttcga cttttacgac acaaaggatc gctggttctt cagcaacctg
      661 gccggtctta gtatcaacgt acccatcatg gatggatggc agcgccgcaa ccgggtgaaa
      721 caagcggaat attcactgca aaaaagcagg aacacgctga accagtttaa gcaggtagtg
      781 gatctccaaa ttgtgtctgc acgttcccag tttaccaatg ccatggaggc cctgaattcg
      841 cagattgata acaaagacct ggccgaaaga gtatatgcgg ctaccaaagt gaagtacgaa
      901 cggggcctcg gcagcagctt cgaagtgttg caaactgaaa ccgccctgca agaggctttg
      961 agcaactatt accaggcctt gtacaatggc gtgatcgcaa aaatcaatta catgcgtgca
     1021 ttgggcaagc tctgatcata cacataaaaa agaagcactc atttttcaaa acatatttat
     1081 gaaaaccatc gctaaccaac tcctcctcat tgccttggcc accagcctgc tgatagcctg
     1141 tggtcaaaac aaaaaagaag cgcccggcag cctcggcgaa aagaaagccg aactggccaa
     1201 acttcagcaa gaagcggctg cacttgccga gaaaattggc aagctggaga cggaaattgc
     1261 caaactggat accagtgcca aaaccgaaaa aggcaaactg atcgccattg ataccattgc
     1321 gctgcaagac ttcagtcatt tcattgaact gcagggcaaa gtggatgccg acaatatttc
     1381 gtacgtaacg ccccgtggtg gccccggaca agttcaggcc atttacgtgg taaaaggaca
     1441 gatggtgaaa aagggacagc caatcctgaa attggatgac cgcatcatcc gccagcaaaa
     1501 ggaacaattg ctgacccaat tgaattttgc caaagacatt ctgaagcgtc gcgaagacct
     1561 gtggaagcag aacattggca gcgaagtaga actgctgtcg gcccgcaaca acgtgacgca
     1621 aattgaacgc cagctgtcta ccctgaatga gcagatggaa atgaccaacg taaccgctga
     1681 agtaagtggg gtggtggatg acgtgatggt gaaagtgggt gagatcttcc agggtggacc
     1741 acagatcagg atcgtcaaca cttcatcact caaggtagtg accgatgtgc cggaaaacta
     1801 cctgagcaag gtaggcaagg gcagcaaggt ggaagtgaac gtacctgata tcaataagtc
     1861 cttcaattcg agcatcagct ttgtaagcgc ctccatcaac ccggccagcc gtggtttcag
     1921 caccgaagcc aaactgcctt ctgatgcagc ccttaagccc aaccagatcg cattggtacg
     1981 catactggat tatgccgccc ccaacgtggt ggtggtgcct atcaacgtca tccaaaccga
     2041 tgaaaaagga aaattcgtgt ttgtggctac caaggaaaat ggtgaaatga cagcccgcaa
     2101 aaaaccggtg acgataggga tggtgcaggg cgaccgcgta gaaataaaat caggactgag
     2161 ccagggcgaa accctgatca ccgaaggctt ccagggactg tacgacggac agaaagtgag
     2221 cacctctttg taaaactgaa acagcagaag acgccgttct ttcggcacct cctagtttca
     2281 acacattgcc gcaaggcttc atcacaaaac atcaaacagt gactgcatta gaaaaactgc
     2341 acgcagaact ggccaaaata aaggagttca agcccaccac ctgggcggtg aagaacaaga
     2401 cctccatgta cctgatgatg gtgtttatca ccattgcagg tgtgttccag tttgtaacac
     2461 ttcccaaaga acagtttccc gacatagtag tgcccaccgt atacgtgcaa acggtgtatg
     2521 tgggcaactc acccaaagac atcgaaaacc tggtaacaag gcccattgaa aaacaattga
     2581 agggcctgag tggtgtgaaa gtgaaaaaga tcacctctac ctcgttgcag gacttttcgg
     2641 ccatcattat tgaattcgat accgatgtaa acgtggatgc cgcggtgcaa aaagtgaagg
     2701 acgcggtgga caaggccaaa aaggacctgc cgacaaacct tacgcaattg ccggtggtac
     2761 aggaaatctc cttcagcgag tttcccatca tgtacgtgaa tgtgagcggg ccctacgacc
     2821 aggttaaact gaaagaatac gccgaccgcc tgaaggatcg cattgaagaa ctgggacaga
     2881 tcacccgggt agacctggtg ggagctcctg agcgtgaaat ccaggtgaac gttgacaact
     2941 tcaaaatgca gagtgccggc atcaccttct ccgacatcga aaatgccatt gcccgggaga
     3001 atgccgatat cagtggtggc ctgctggatg tgggcaccat gaaacgcaac ctgcaggtaa
     3061 aagggcaatt caaaagcgcc ttcgacctca ataatgtggt agttcgcaac aaccgcggcg
     3121 cttccattta cctgaaagac attgccgaaa taaaagatac catcaaagag cgggagagct
     3181 ttgcccgcct gggcgacaac aaaaccactt cgcaaccggt ggtcacgctc aacatcatca
     3241 agcgcagcgg cgaaaacctg attgaggcag ccgatggtgt gaaggtgata gtggatgacc
     3301 tggtgaagag tgagtttccc aaagacctga atgtggtgat caccggcgac cagagcaaga
     3361 aaaccaaagc ctcgtttgaa gaactggtaa acaccattgt gctgggcttc attttcgtgt
     3421 tgctggtact catgttcttc atgggcgtta ccaatgcctt ctttgtggcg ctgagtgtgc
     3481 cgctcagcat gtttgtggcc ttcctgttcc tgcctattgg caacgtgatc gtaggcaccg
     3541 aaatcacgct caacttcatt gtgttgtttg ccctgctctt tggcctgggc attattgtgg
     3601 acgatgccat tgtggtgatc gaaaacacgc accgcatatt tgccgaaggc aaaggcatga
     3661 tccgttcgga catggcggcc cgctatgccg ccggcgaagt ttttgtgccg gtactcaccg
     3721 gtacgcttac caccctggcg ccgttcttcc cgttgctgtt ttggccgggg cttatcggaa
     3781 agttcatgat ctacctgccg gccatgctca tctttacact gacggcctca ctgatcgtgg
     3841 cctttatcat gaaccccgtg ttcgcggttg acttcatgaa ccacgaagag caccaagcca
     3901 aaaagaagag cgatgtattc cgcagcaaaa tgttctggac cttgctggtt ggcggcgtgt
     3961 tgttcgatat catcggtttg ttcgccggag gcggcctctg gtacttcttt ggcaacctca
     4021 tgatattcct ggccttaatg gccattgtaa acagctattt gctggatggc atgatccatt
     4081 cattccagag ccgcttcttg cccggcctga tgcgccagta tgaaaagctg ctgcggtggg
     4141 cattggctgg tacgcggccg gtatggttgg tcattgcttt gtttggcgtg ttggttggct
     4201 cctttatgat ttttggcgcc gcagccggca gtggccgtgt tcccgttgtg tttttcccgc
     4261 aaagtgatcc caacattgtg tatgtgtacc tcaagttgcc tacgggtacc gatgtgcgcc
     4321 ataccgacag cgttatcagc tcccttgaaa ccaaagtgta taaagtgctg ggcatggaaa
     4381 atggccagaa gaatgaaatg gtggaaagca tcatcaccaa tgtggccgtg ggtgccagcg
     4441 atcccaacag cggcgaccgc agcacccggg ctgaactggc caggatacag gtgagctttg
     4501 tggagtttga aaagcgggaa ggaaaatcca ccatgccata ccttaccaaa atacgagaag
     4561 ccatgcaagg cattcccggt tcggaaattt cggtggcgca ggaagccaat ggtcccccaa
     4621 cacagccacc tgtgaacatt gaagtgacca gtgaaaactt tgaatcgctg acccgcacgg
     4681 cggtagcatt gaaaaatttc ctcgatacca acaaggtggc cggtatcgaa gaacttaaaa
     4741 tggatatcga cctgcagaac cccgagatca cagtgtcggt agaccgggaa cgtgccctta
     4801 tagaaggcat ttccaccgca caggtaggca tggaaataag gactgccctg tttggtaaag
     4861 aagtgagcaa actgaaggat gaggaagatg aatacaaaat acagttgcgc agcaatgaac
     4921 tgcagcgcaa gaacctgagc gacctgctga acatgcgcat caccttccgc gacttcaata
     4981 ccgggcagat caagcaagtg cccatttcag cagtggcaaa aattgatctg accagcacct
     5041 acggcagcat caagcggaag aacctcaaac gggtgatcac actgtactca aacgtattga
     5101 gtggttatac accgaccgcg gtaaatgcag aactggccaa ggtgatccag aacttcaggc
     5161 aaaagcccga tgatgtgtcc attgcccaaa ccggcgaagg cgaacagcag gccgaagcag
     5221 ccagcttcct gacaaaggct ttgctgatag ccctggcact cattcttatc atcttagtgt
     5281 tacagttcaa cagcgtaagc aaacccatca tcattcttac cgagatcatt ttctcggtca
     5341 ttggtgtatt gctgggcttt gccatcactg gaatggaagt atcggtagta atgacgggta
     5401 tcggtattgt aggcctggca ggtattgtgg tgaaaaacgg tatcctcgtt attgaatttg
     5461 ccgatgaatt gcgcagccgt ggcatgcgca cccgcgaagc attgatacag gccggtaaaa
     5521 cccgcatcat ccctgtattg cttacagcag tagcagccat cctcggtttg atcccgctgg
     5581 cggtgggtct caatatcaac ttcatcacca tgtttgagca actcaacccg cacctctggt
     5641 ttggtggcga caatgctgcg ttctggaagc cgctcagctg gaccatcatc ttcggtctca
     5701 tcttcgcctt cttcatgacg ctgattgtgg tgcctgccat gtacctgatg gccgaacgtt
     5761 tgcgccgtcc catgcgtcgc ttctttggtg gcaaatggat cagtttcgtg gcaatacctc
     5821 cattcaccgt attgttcctg ttgctggtaa ttgcagccgc aatcatacat cgtttcaaag
     5881 tgagtgcccg tcgcagaaga gccgtgggca aagtggacga aacctggatc ggcagttggt
     5941 tctgatcgaa ataacagatc aatcacccga aaagaggaat gcacttactg cattcctctt
     6001 ttcatttcgt gtgtcaaatg catgaatgac tatatacatt ttttccactt tcttacaatt
     6061 cttggatgaa tgaattttca taactgtaaa ttcacacaac taaaaacatt tttaagatgg
     6121 ccacctctaa aaaatcttcc aaaaagaaag cagctcctgc taagaaagct gcgcccaaaa
     6181 aagtagctaa gaaggctgcg cccaagaaag ctgctaaaaa agtcgtgaag aaagccgctc
     6241 ctaaaaaggc tgctcccaag aaagccgcga agaaggcagc gcccaaaaaa gctgctgcga
     6301 aaaaagtagc gaaaaaagct gcaccaaaga aagcagccaa aaaagccgct ccaaaaaaac
     6361 ccgcagcaaa gaaggccgca gctcctaaga aagccgcctc aaaaaaagcc gcccccaaga
     6421 aggctgcagc aaaaaaagcc gcccccaaga aggctgcagc aaaaaaagcc gctcctaaga
     6481 aggccgcagc aaagaaggcc gctcctaaaa aagccgccgc taaaaagcct gccaagaaag
     6541 ctccgaagaa agcagcaccg gct
//
LOCUS       DATIQF010000330         2669 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_51009, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000330 DATIQF010000000
VERSION     DATIQF010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2669
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51009"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..636)
                     /locus_tag="VLL95_05500"
     CDS             complement(<1..636)
                     /locus_tag="VLL95_05500"
                     /inference="COORDINATES: protein motif:HMM:NF017021.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HSR38349.1"
                     /translation="MKILKVTGISLASLLLLMLLLPVLFPNAFSKQIKAWANDSITVQ
                     LDFAAAKLSFFSHFPHLTLTLQDYSLTGATPFEKDTLISGKALGFGIDLFSVFGSTIK
                     INRLFIDESNIKVLIDKNGNANYNILKPTTEKPAEKSDTASANVRLEGLYLNNCQLDY
                     TDHSVPMAFHAEQLNYVGKGDLQSSQFDLKSKLSAEHFRFIYDGLTYINDKP"
     gene            complement(709..1440)
                     /locus_tag="VLL95_05505"
     CDS             complement(709..1440)
                     /locus_tag="VLL95_05505"
                     /inference="COORDINATES: protein motif:HMM:TIGR00730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HSR38350.1"
                     /translation="MKKINPVIPSKQHVFLEGPRSRRYELLFAFRVFRQFIHGFRHLH
                     FVKPCITVFGSARFGPGHQWYAAAEQFGQQIATMGFATMTGGGPGLMEAANKGAYEHG
                     GQSIGCNIKLPFEQKANPYVHRSITFEHFFVRKVLLVKYSYAFIIMPGGFGTMDELFE
                     TLTLIQTKTISTFPVVLFGKAYYNELWEYLQYMEKQGTISKGDLDLVLLTDDVHEAMM
                     HISNYVKANFVVKPRNKKWWLFERR"
     gene            1607..2506
                     /locus_tag="VLL95_05510"
     CDS             1607..2506
                     /locus_tag="VLL95_05510"
                     /inference="COORDINATES: protein motif:HMM:TIGR00147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0001727 - lipid kinase activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YegS/Rv2252/BmrU family lipid kinase"
                     /protein_id="HSR38351.1"
                     /translation="MKRRILFVVNPIAGTKKNDGLEEYLKREAEKDQVEYRIFQTSRN
                     TNAYALQHQAEEFDATDIVACGGDGTVNLVAAAVKDTHTRIGIIPVGSGNGLARAANI
                     PLKPAEAYQVIRACKVAETDTFTVNRQFACMLAGVGFDAAVAERFSQHHKRGLMTYTT
                     QTLIEFFRSHPYQFEICLDGFAFFTDAFFISVANSNQYGNNVTIAPVASISDGLLDVI
                     IVQRMPKAQLPFALLKQVSGNNKLRSYAERLHKNNVLYYQAQNVQIRNLQLAPLHIDG
                     DPAATSEEISIRMAPKSIRLLVP"
BASE COUNT          652 a          633 c          706 g          678 t
ORIGIN      
        1 gggtttgtca ttaatgtagg tgaggccgtc gtaaataaat cgaaagtgtt cagcactgag
       61 ttttgacttg agatcgaact ggctgctttg caaatcgcct ttgcccacat agttgagttg
      121 ttcggcatga aaagccatcg gcacagaatg gtcggtgtag tccaactggc agttgttgag
      181 gtacaggcct tccagtctca cattggcaga agctgtgtcg cttttttccg cgggtttttc
      241 agtggttggt ttcaggatgt tgtaattggc attgccgttt ttatcgatca gcactttgat
      301 gtttgattca tcgatgaaga gcctgttgat tttgatggta ctgccaaata cagaaaacag
      361 gtcaatgcca aaccccagtg ctttgccact gatcaaagtg tccttttcaa acggtgtcgc
      421 tcctgtaaga gagtagtctt gcaacgtgag ggtgaggtgc ggaaagtgag agaaaaacga
      481 aagtttcgcc gcggcaaaat ccaactggac ggtgatgctg tcattggccc aggcttttat
      541 ttgtttggaa aaggcattgg gaaaaaggac aggaagcaac agcatcagca acagcaatga
      601 agccaggctg ataccggtta ctttcaaaat tttcaaaacg cgttttctca tgtagtgtcg
      661 ggaaccgaaa gataatcaag tgtggcttca aactgttgaa atgcgcacct atcttctttc
      721 gaacagccac catttcttgt tccggggctt caccacaaaa ttggctttta cgtagttcga
      781 gatatgcatc atagcctcgt gtacatcatc cgtaagcagc accaggtcca agtcgccttt
      841 gctgatggtg ccttgttttt ccatgtactg caggtactcc cacagctcgt tgtaataggc
      901 ttttccaaac agtaccaccg ggaaggtgga aatggttttc gtctggatga gggtaagggt
      961 ttcaaacaac tcatccatgg tgccaaaacc gccgggcatg atgatgaacg cgtaggagta
     1021 tttcaccagc agcaccttgc gtacaaagaa gtgttcgaaa gtgatggaac ggtgcacgta
     1081 agggttggct ttctgctcga agggcagttt gatattgcaa ccaatggact gcccgccgtg
     1141 ctcataggcg cctttgttgg cggcttccat caggcccggt ccgccaccgg tcatcgtggc
     1201 aaagcccatg gtggcaatct gttggccgaa ttgctccgca gccgcgtacc attgatgccc
     1261 gggcccgaac ctggccgaac cgaaaacggt gatgcatggc tttacaaaat gcagatggcg
     1321 aaagccatgg ataaactggc ggaacaccct gaaggcaaac aacaattcat agcgccggct
     1381 gcgcggccct tcgaggaata cgtgctgctt ggaaggaata acaggattga tctttttcat
     1441 gattcataga actgttgcac taaatgtaac gcttgccacc tttttatttc atgacctggc
     1501 acggcctgta tgtttcccga tttatcctaa aattggcttt atttcctgcg gtcattttca
     1561 ggggcattct ttatttcaat gacctttgcc gcagcgatgt aagcttatga agcgaaggat
     1621 cttatttgtg gtaaacccta tagccggcac taagaaaaat gacgggctgg aggagtattt
     1681 gaaaagggag gcggaaaagg accaggtgga gtacaggatc ttccagactt cacgaaatac
     1741 caatgcctac gctttgcagc accaggccga agaatttgat gccaccgata ttgtggcttg
     1801 tggcggcgat ggcaccgtga acctggtggc ggccgccgta aaggatacac acacccgcat
     1861 cggtatcata cccgtaggca gtggcaatgg cctggcccgg gcagcgaaca ttccattgaa
     1921 accagcagag gcgtaccagg tgatccgtgc ctgcaaggtg gcggagaccg atacattcac
     1981 cgtcaaccgg cagtttgcct gcatgctggc gggtgtgggt tttgatgcag cggtggcaga
     2041 gcgattttcc cagcatcaca agcggggcct gatgacctat accactcaaa cgctgatcga
     2101 gtttttcaga tcgcatccct accagttcga gatctgcctc gatgggttcg cattttttac
     2161 agacgctttt ttcatcagtg tggccaacag caaccagtat ggcaataatg tcaccattgc
     2221 gccggtggcc agcatttccg atggtttgct ggatgtgatc attgtacagc gcatgcccaa
     2281 ggcgcagctg ccatttgcct tgctcaaaca ggtgagcggc aataacaaac tgcgcagtta
     2341 tgcagagcgg ctacacaaaa acaatgtatt gtactaccag gcacagaacg tgcagatacg
     2401 caacctgcaa ttagcgccat tgcacattga tggcgatccg gcagccacca gcgaagagat
     2461 cagtattcgc atggcgccca aatccatccg cctgctggtg ccctgatcca ttcattttgt
     2521 attgagcaag cgggtaaggg tttgcagcga ttgctggttg tggcccaggt tcagcgattc
     2581 ttcaatgtct ttcttttcgc gacgggtgag gtgaaaacta agtgaggcgc cttcctgttt
     2641 ggggccgggc cggtattcaa ataccaccc
//
LOCUS       DATIQF010000331         1653 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_278881,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000331 DATIQF010000000
VERSION     DATIQF010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1653
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278881"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(20..331)
                     /locus_tag="VLL95_05515"
     CDS             complement(20..331)
                     /locus_tag="VLL95_05515"
                     /inference="COORDINATES: protein motif:HMM:NF013538.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38352.1"
                     /translation="MIRIGTRDSRLALWQAEQVQSALLQYGIDSELVPVKSEGDIDLV
                     TPLYEMGVQGVFTRTLDAALLNNRIDIAVHSMKDVPTQLPKGIQQCAVLTRGHAEDVL
                     V"
     gene            complement(328..1575)
                     /gene="hemA"
                     /locus_tag="VLL95_05520"
     CDS             complement(328..1575)
                     /gene="hemA"
                     /locus_tag="VLL95_05520"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: protein motif:HMM:TIGR01035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HSR38353.1"
                     /translation="MKLNADHIRERFCMAGISYRQADAATRGLFAVDDELHRRIVRDA
                     KVAGFKSVFVISTCNRTEIYGYANHPKELGSLLTEQTTGTFGEFLHHGYFLQGKEALH
                     HLFRVAAGLDSQIIGDYEIQGQLKQAINAARQEEMIGPIMDRTLNFVFQASKKIRTNT
                     GLSTGTVSVSFAAIEWLQQKVGKRQLKALVIGTGKFGANVCKNLLHYMPNISLTVCNR
                     TPERAAALAKSLEVDSISFESLPEQLQDFDIIVASTAAQDPIVRAAHFTTLKERFVVD
                     LSIPANVEKEVGQIPGVHFANVDDISVILEQNIARRHTEVPKAEAIIAEFEEEFYNWL
                     HMYKHTPAIRLFKQHLSEWTSQSGCEFANQQGPQSKELQELMHDTINDLVVNLKHRAE
                     KGCYVIEAYQQFLNHPAVGLSAS"
BASE COUNT          394 a          432 c          371 g          456 t
ORIGIN      
        1 agatggatac atcgccagtc tataccagca catcttcggc gtggccacgt gtcaacacgg
       61 cacattgttg aatgcccttt ggcagttgcg tgggcacatc tttcatgctg tgcactgcta
      121 tatcaatgcg gttattcagc aaggcggcat ccagggtacg ggtaaacacc ccctgcacac
      181 ccatttcgta aagcggcgtt accaggtcaa tatcgccctc actttttacc ggcaccaatt
      241 ctgaatcaat accgtattgc aagagtgccg actgcacctg ttcggcctgc cacaaggcaa
      301 gcctgctgtc gcgggttcct attcttatca tgatgccgac aaacctacag cgggatgatt
      361 tagaaattgc tggtaggcct ctatcacata gcagcccttc tccgccctgt gtttcaggtt
      421 tacgaccagg tcgttaatgg tatcgtgcat cagttcctgt aattctttgg attgcggacc
      481 ttgctgattg gcaaattcac atccgctttg agatgtccat tccgacaaat gctgtttgaa
      541 caacctgata gcaggcgtat gcttgtacat gtgcaaccag ttgtaaaact cttcttcgaa
      601 ctcagcaatg atggcttccg cctttggcac ctcggtatgc ctgcgagcta tgttttgctc
      661 cagtatcact gaaatatcat ccacgttcgc aaaatgaaca cccggtattt gacctacttc
      721 cttttcaaca ttggccggaa tgctcaggtc cactacgaaa cgttctttta aagtggtgaa
      781 atgagcagcc cgaacgatgg gatcctgtgc ggcggtactg gcaacaatga tgtcaaaatc
      841 ctgcaactgt tctggcagtg attcaaagga gatgctatcc acctctaacg actttgccaa
      901 agccgctgcc ctttccggtg tgcggttgca tacagtaagc gaaatattcg gcatgtagtg
      961 aagcaggttc ttgcacacat tggcgccaaa cttgcctgtg ccaatcacta atgctttcag
     1021 ttgccttttg cccacttttt gctgtagcca ttcgatggct gcaaatgata cagaaacagt
     1081 gccggtactc agcccggtgt tggtacggat ctttttggaa gcctggaaca caaaattcag
     1141 agtgcgatcc atgatcgggc caatcatttc ttcctgccga gcagcattaa tagcctgctt
     1201 caactgaccc tggatttcat aatcaccgat gatctgcgaa tcgaggcccg cagctacccg
     1261 gaacaagtga tgcaaagctt ctttgccctg caggaaatat ccgtgatgca agaattctcc
     1321 gaaggtacca gtggtttgct cggtcaggag agaacccaat tctttgggat ggttggcgta
     1381 gccataaatt tcggtgcggt tgcaggtgct tatcacaaac acacttttga aaccggccac
     1441 ttttgcatct cttacaattc tgcgatgcag ttcatcatct accgcaaaca aaccacgagt
     1501 agccgcatct gcctggcgat aactgatacc cgccatgcag aatcgttctc ttatgtgatc
     1561 tgcgttcaat ttcatgagcc ctgcaaaggt attcgccggt caaaatttcg atccatcata
     1621 ctgtcatgtg tttgtcattt tagttcctat tcc
//
LOCUS       DATIQF010000332         3940 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_294161,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000332 DATIQF010000000
VERSION     DATIQF010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3940
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294161"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..699)
                     /locus_tag="VLL95_05525"
     CDS             complement(<1..699)
                     /locus_tag="VLL95_05525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38354.1"
                     /translation="MRLRLIISSLLIIAVAGMGWAQKPVAKGWHLLDKDKDGYDGISL
                     EKAYDLLRNKPSTPVIVAIIDSGIDTTHEDLKRVLWRNRKDSTLNGRDEDNNGYTDDR
                     FGWNFLGNKNGKNVEKESSEAARLYHILSPVFENKTVDSAHLTKHEREQYELWKQVSK
                     AVQVTEEDRFLMRILVRIQETLVGYDSIIASQLGSIEFNALDLEKFMPSNADGKKAKL
                     NYLRIYELLQLDPEM"
     gene            complement(735..1157)
                     /locus_tag="VLL95_05530"
     CDS             complement(735..1157)
                     /locus_tag="VLL95_05530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38355.1"
                     /translation="MVHQLLPLFYTAILLASLLYSKYALEKAGLQLQEKERIAANELL
                     KSALAMNVILTMVFFLSMPIAGKYLSQAYHWIAAIISGVFALLFVLINNRLYQEYHSQ
                     GFPNAFCHMFVQSRLVLLIGLLVFGHFLFETAQTFANP"
     gene            complement(1169..2695)
                     /locus_tag="VLL95_05535"
     CDS             complement(1169..2695)
                     /locus_tag="VLL95_05535"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSR38356.1"
                     /translation="MKDFLQALHLQAANAGTSTGSQWMESSGNILESYSPVDGSLIGT
                     VTATDAGSYEAVVAKAQAAFAEWRQWPAPRRGEIVRQVGEALREYKEPLGKLVSYEMG
                     KSLQEGLGEVQEMIDICDFAVGLSRQLYGLSMHSERPGHRMYEQWHPLGVVGIISAFN
                     FPVAVWSWNSMLAWVCGDICIWKASEKAPLCSVACQHIVQEVFAKNGVPEGVSCIING
                     GREVGEWMSNDTRLPLISATGSTRMGKEVGKTVAARLGRSLLELGGNNAIIISEHADL
                     DTSLIGCVFGAVGTAGQRCTTTRRLIIHHTVYNAFKQKLAGAYQQLKIGDPLDASNHV
                     GPLIDKAAVAQYLHAIEACKSQGGTFLVEGGVLEGPGYESGCYVKPCIAEVSNDMAIV
                     QHETFAPILYIMPYQTLDEAIAMQNNVPQGLSSAIMTLNLREAEQFLSAAGSDCGIAN
                     VNIGTSGAEIGGAFGGEKETGGGRESGSDSWKNYMRRQTNTINYSTKLPLAQGIQFNL
                     "
     gene            complement(2751..>3940)
                     /locus_tag="VLL95_05540"
     CDS             complement(2751..>3940)
                     /locus_tag="VLL95_05540"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR38357.1"
                     /translation="AQNFYTTFVSDTARERVKTWWNHLHTGYKGSKWSWWLDAGYKTV
                     DDRYAYNSTGKPNENKSDIFQLQSVADLKISDRSSLVTGVQYINKGIVSNDRGNHSVW
                     QTGLFAIWKQEAGKYFHLEPALRFDYNDRGGFELVPQMNASYRRSIYQLRGSIGRTIR
                     DADFTERFNNYNKPLVTSGSIGNPDLVAETSWSYEAGADLWLGKHWKIASTFFRRDQQ
                     NLIDFVPTRYADMPRQVNLVPNGRYALAQNIASVVTQGFETDIVYRRVFNQRFTVLAN
                     AGLLWLDSDNAEGGEPGFYISSHANFMTNFGLQLQAGRFAFSVNGLYKTREPRSAPAI
                     NAEITPSYFVMNVKAEGRIVKGLGVFVQADNVFDEQYSDLLGSVMPGRWLMGGIKWQF
                     TKQ"
BASE COUNT          869 a         1072 c          995 g         1004 t
ORIGIN      
        1 catttcagga tccagttgca gcaattcata aatgcgcagg taattcagct tggccttttt
       61 gccatcagca ttggaaggca tgaatttctc caggtccaac gcattgaatt ctatagagcc
      121 gagttggctg gcaatgatgg aatcgtatcc aacgagtgtt tcctggatac gtaccaaaat
      181 gcgcatcagg aagcggtctt cttcggtcac ctgcaccgct ttgctcacct gtttccacaa
      241 ttcatattgt tctctttcgt gtttggtcaa atgagcactg tccactgttt tgttttcaaa
      301 cacagggctc aggatatgat aaagccttgc cgcttcggaa gattcctttt cgacattttt
      361 cccgttcttg ttgcccagga aattccagcc aaacctgtcg tcggtgtagc cattgttgtc
      421 ctcgtccctg ccattcagtg tgctgtcttt gcggtttcgc cacaataccc gcttcaggtc
      481 ttcgtgggtg gtgtcgatgc cgctgtcaat gatggctacg atcactggcg tggatggttt
      541 gttgcgcagc aggtcatatg ctttttccag cgaaatgcca tcgtatccat ccttgtcctt
      601 gtcgagaagg tgccaacctt ttgccaccgg cttttgggcc cagcccatac cggccacggc
      661 gataataagc aaagaagaaa tgatcaatcg aagcctcata gtgcaaattt ggaagcaatg
      721 gtccagggtt gctgttacgg attggcaaat gtttgggcag tttcaaacaa aaaatggccg
      781 aaaaccagca ggccaatgag taaaaccagc ctgctctgca caaacatgtg gcaaaaagca
      841 ttggggaagc cctggctgtg gtactcctgg tatagccggt tgttgatcaa aacaaatagc
      901 agcgcgaaca cacctgagat gatggctgcg atccagtggt atgcctgcga aaggtatttc
      961 cctgcaatgg gcatgctcaa aaagaacacc atggtaagga tcacattcat ggccaatgcc
     1021 gatttcaaca actcgttggc ggcaattcgc tctttttcct gcaactgcag gcccgctttt
     1081 tccaatgcat acttggaata aagcaagctg gccagcagta ttgcagtata aaaaagaggg
     1141 agcaattgat gaaccattcc ccgagcaatt acaagttgaa ctgaatgcct tgcgccagcg
     1201 gcaatttggt gctgtagttg atggtattgg tttgccggcg catgtaattc ttccaggaat
     1261 cgctgccact ttcacgaccg ccgccggttt ccttttcacc accaaaagcg ccgccgattt
     1321 cggcaccgct ggtaccgatg ttcacgttgg caatgccaca atcgctgccc gcggcactca
     1381 aaaactgttc tgcttcccgc aggttcaatg tcatgatggc gctgctgagg ccctgtggta
     1441 cattgttctg catggcaatg gcctcgtcca gtgtctggta gggcataatg tacaaaatgg
     1501 gggcaaaggt ctcgtgttgt acaatggcca tgtcgttcga tacttcggca atgcagggct
     1561 ttacatagca gccgctttca tagcccggtc cttccaacac gccgccttcc accaggaagg
     1621 tgccaccctg tgatttgcag gcttcaatgg cgtggaggta ttgtgccacc gccgctttgt
     1681 cgatgagtgg tcctacgtgg ttgctggcat ccagcgggtc gccaattttc aattgctggt
     1741 aagcgccggc cagtttttgt ttgaaggcat tgtaaacagt atggtggatg atgaggcgac
     1801 gggtagtggt gcagcgttgc ccggcagtac ccaccgcgcc aaacacacaa ccaatgagcg
     1861 atgtatccag gtcggcatgc tcgctgatga tgatggcatt gttgccgccc aattccagca
     1921 ggctgcggcc cagtcgtgcc gctacggttt tgcccacttc cttgcccatg cgggtgctgc
     1981 cggtggcgct gatcaatggc aggcgggtat cgttgctcat ccattcgcct acttcgcggc
     2041 cgccgttgat gatacagctt acgccttcgg gaacgccgtt tttggcaaat acttcctgca
     2101 cgatgtgctg gcaggctacc gaacacaaag gcgctttttc tgacgccttc caaatgcaga
     2161 tgtcgccgca aacccaggcc agcatgctgt tccagctcca taccgccacc gggaaattga
     2221 aggcgctgat aatgcctacc acgcccagtg ggtgccactg ctcgtacatg cggtggccag
     2281 ggcgttcgct gtgcatgctc aatccataca actgccggct cagacccacg gcgaaatcgc
     2341 agatgtctat catttcctgc acttcgccga ggccttcctg caggctcttg cccatttcat
     2401 aactcaccag tttgcccagt ggttctttat actcacgaag cgcttcgcct acctgcctta
     2461 caatttcgcc tcggcggggt gccggccact ggcgccactc tgcaaatgca gcctgcgcct
     2521 ttgccaccac ggcttcataa cttcctgcat cggtagcggt cactgtgcct atcagtgagc
     2581 cgtcaaccgg cgaataactt tcaagaatat ttcctgaact ctccatccat tggctgccgg
     2641 tagaagtgcc ggcattagcg gcctgcaaat gcagcgcctg caaaaaatct ttcatacaac
     2701 tgtttttaag gtcaatgcaa tcgttttggt gcattggcgc ggaaaggtaa ttactgcttt
     2761 gtaaactgcc attttattcc ccccatgagc cagcggccgg gcatcaccga acccaaaagg
     2821 tcgctgtatt gctcatcgaa aacattatcg gcctgcacaa atacacccag gcctttcacg
     2881 atccttcctt cggctttcac attcataaca aaataggatg gggtgatttc ggcattgatg
     2941 gcaggggcgc tcctgggctc ccgtgtcttg tacaatccat ttaccgaaaa tgcgaaacga
     3001 cctgcctgca gctgcaggcc aaaattggtc atgaaattgg catgtgagct gatgtagaac
     3061 ccgggctcgc caccctctgc attgtcgctg tccagccaaa gcaggccggc attggccagc
     3121 acggtgaagc gttgattgaa cacccggcgg tacacgatat ctgtttcaaa accctgggtc
     3181 actaccgagg caatattctg tgccaatgca taccgcccgt tgggcaccag gttcacctgc
     3241 cgtggcatgt cggcatagcg ggtgggcaca aagtcgatca ggttttgctg atcgcggcgg
     3301 aagaaggtgg aggcaatttt ccaatgcttg cccagccaca gatcggcccc ggcttcataa
     3361 ctccaagagg tttccgctac caggtcgggg ttgccaatgc tgccgctcgt taccagtggc
     3421 ttgttgtaat tgttgaagcg ttcggtaaaa tcggcatcgc gaatggtgcg gccaatgctg
     3481 ccccgcaatt gataaatgct gcgccggtag gaggcattca tttgcggcac caattcaaaa
     3541 ccgccacggt cgttgtagtc gaagcgcagt gcaggctcca aatgaaaata tttgcctgct
     3601 tcctgcttcc agatggcaaa caaacccgtt tgccaaacgc tgtgattgcc acggtcgttg
     3661 ctgacaatgc ctttattgat gtattgcaca cctgtcacca gggaagaacg atcacttatc
     3721 ttcaaatcag ctacagactg caactggaaa atatccgatt tgttctcatt aggcttgcct
     3781 gtgctgttgt aggcatagcg gtcgtccact gttttgtagc cggcatccag ccaccacgac
     3841 catttgctgc ctttgtaccc ggtatgcagg tggttccacc aggttttcac tctttccctg
     3901 gcagtgtcgc ttacgaacgt ggtgtaaaaa ttctgcgccg
//
LOCUS       DATIQF010000333         2527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_127112,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000333 DATIQF010000000
VERSION     DATIQF010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2527
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127112"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..381
                     /locus_tag="VLL95_05545"
     CDS             <1..381
                     /locus_tag="VLL95_05545"
                     /inference="COORDINATES: protein motif:HMM:NF025862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 97 C-terminal
                     domain-containing protein"
                     /protein_id="HSR38358.1"
                     /translation="ADLPEAYEPMLDAFQFIKDVAVDWDASYYLEAEPGDYLTIARKA
                     KGREMWFAGAITDENERTASFDLSFLPAGRTYKATVYRDGDQAHWEKNPMQYVIETRT
                     VKAGEVLKVKLAAGGGAAITIAAQ"
     gene            439..1149
                     /gene="pyrH"
                     /locus_tag="VLL95_05550"
     CDS             439..1149
                     /gene="pyrH"
                     /locus_tag="VLL95_05550"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: protein motif:HMM:TIGR02075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HSR38359.1"
                     /translation="MQPAYKRVLLKLSGESLMGDNQFGLDPKVLAQYAEDIKSIIALG
                     VEVAVVIGGGNIYRGMNEADTGIERAQGDYMGMLATVINGMAIQSALEKAGVFTRLQS
                     AIKMEAVAEPYIRRRAIRHLEKGRVVIFGAGTGNPYFTTDTAGSLRAIEIKADVILKG
                     TRVDGIYTADPEKDPTATKYDTVSYKDCINNNLKVMDMTAFTLCMENNLPIIVFDMNT
                     PGNLKKVVSGEHVGTLVK"
     gene            complement(1223..1345)
                     /locus_tag="VLL95_05555"
     CDS             complement(1223..1345)
                     /locus_tag="VLL95_05555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein THX"
                     /protein_id="HSR38360.1"
                     /translation="MGRGDKKTKKGKIFKGSFGKSRVARPTQNKKAPVIKKAEA"
     gene            complement(1445..1714)
                     /locus_tag="VLL95_05560"
     CDS             complement(1445..1714)
                     /locus_tag="VLL95_05560"
                     /inference="COORDINATES: protein motif:HMM:NF037081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HSR38361.1"
                     /translation="MNKADLIAKIAEDAGITKTQAGGALDSFVEAITKTLKKGDKVTL
                     VGFGTFSVSKRAARTGRNPQTGETIKIKAKKVARFKPGKELSEKI"
     gene            complement(1996..2301)
                     /locus_tag="VLL95_05565"
     CDS             complement(1996..2301)
                     /locus_tag="VLL95_05565"
                     /inference="COORDINATES: protein motif:HMM:NF025479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4286 family protein"
                     /protein_id="HSR38362.1"
                     /translation="MLIYNVTTKVSWPIHEEWLQWMQGVHIPEVMATGCFEKFQMVRL
                     LEIDEEEGPSYAIQYYASGRDVYEKYISEYAPALREKATKAWGDQFIAFRTLMEVVG"
BASE COUNT          655 a          599 c          621 g          652 t
ORIGIN      
        1 gccgatttgc cggaggccta tgaacccatg ctggatgcat tccagttcat caaggacgtg
       61 gctgttgatt gggatgcgtc gtattacctg gaagcagaac ccggcgatta cctgaccatt
      121 gcccgcaaag ccaagggcag ggaaatgtgg tttgcaggag ccatcaccga tgaaaatgaa
      181 aggactgctt cttttgacct ttcctttttg ccggccggcc gcacatacaa ggccaccgtg
      241 taccgcgatg gcgaccaggc ccattgggaa aagaacccaa tgcagtatgt cattgaaacc
      301 cgtactgtaa aggccggcga ggtgctgaaa gtgaaactgg cagccggagg tggagcggcc
      361 ataaccattg ctgcgcaata attcagtttt gatgttgtaa gtgtatcacg gatatttgcc
      421 cgcaaacacc tgatatccat gcaacctgct tacaaacgtg tactgctcaa actttcgggc
      481 gaatcattga tgggcgacaa ccaatttggc cttgacccga aagtgctggc acaatatgcc
      541 gaagacatca agagcattat agcgttgggc gtggaagtgg cagtggtaat aggcggcggc
      601 aatatttacc gcggcatgaa tgaagcggac accggcattg aaagagcgca gggcgattac
      661 atgggtatgc tggccaccgt catcaatggc atggccatcc agagcgccct ggaaaaggcg
      721 ggggtattca cccgtttgca gagtgccatc aaaatggaag cggtggcaga accttatatc
      781 cgccgtcgtg ccatacgcca tttggaaaag ggccgggtgg tgatctttgg cgccggcacc
      841 ggcaacccct attttactac cgatacagcg ggctcattgc gggccattga aataaaggcc
      901 gatgtgatcc tgaaaggcac ccgtgtggat ggcatttata ccgccgatcc ggaaaaggac
      961 cccacggcta ccaagtacga tacggtcagt tacaaagact gcatcaacaa caacctgaaa
     1021 gtgatggaca tgacagcctt cactttgtgc atggaaaaca acttgcccat tatcgtattt
     1081 gacatgaaca cgcccggcaa cctgaaaaaa gtggtgtctg gcgagcacgt gggcaccctc
     1141 gtgaaatgag catgaaactt tcttcataaa aaaagcaacc acggaaaaag tggttgcttt
     1201 tttgtttggc gcacagttgc aattaagctt ctgctttctt gatcaccgga gcctttttgt
     1261 tttgtgtagg acgagctaca cgagacttgc caaatgatcc tttaaaaatc ttgcctttct
     1321 tggttttttt atcacctctt cccataattc aaatttttaa gaaggcaaat atacttgccc
     1381 cggccccaaa taaaaaagca ggaaaccttt ggattcctgc ttttgcaaaa gttgttcggg
     1441 aagatcagat cttttcagac agttctttac caggcttgaa gcgagccact ttcttcgcct
     1501 tgatcttgat ggtttcacca gtctgagggt tgcgacctgt acgggcagca cgcttagaaa
     1561 ctgagaaagt accaaagccc accagggtta ctttgtcacc ttttttcagg gtcttggtaa
     1621 tagcttctac gaaagaatcc agggcaccgc ctgcttgtgt tttagtgata ccagcgtctt
     1681 cggcaatctt ggcaatcaaa tctgctttgt tcataaaatg ggtttttaat tgtctgaaac
     1741 aaatatatgt ggatgcacta ttgaaaaagt gtgagagtta tcaacaattt tttcgccgga
     1801 aatgcttgct gccattgggt ttgcgggatt ttgtatatac aattaccggc agccggaacg
     1861 gaaggatgat ccctgtaaac cgttgtgcca taagggttta cagccttttt cgctgaaacc
     1921 cgcgtcatta ttgggttttg gaagactgcc tgctatgaaa tccatgaatt ttgcagccgc
     1981 cttattttcc acagatcacc ccaccacttc cattagtgta cggaaggcaa tgaactgatc
     2041 accccatgct ttggtcgctt tttcacgcaa ggccggggca tattcgctga tgtatttttc
     2101 atatacatcg cggccgctgg catagtactg gatggcatag ctgggacctt cttcctcatc
     2161 gatttccaac aggcgcacca tctggaattt ttcgaagcag ccggtggcca ttacttccgg
     2221 aatgtgtacg ccttgcatcc actgcagcca ttcctcgtga atgggccatg acactttggt
     2281 ggtaacatta taaataagca tagaaactcg gcaattcagg tttgaaataa aaagaccaaa
     2341 accaaaaacg acaaatagcg gcagggttat tttttcaagg ctacatacac cgggcagtga
     2401 tcgctgtgct tcacgtcggg aaatatggcg acgtcctcaa tttttgatgc caggtttttg
     2461 gtaaccgaaa tatagtcgat gcgccatcct ttgttttgca ggcgcacact cgggaaacgc
     2521 tggctcc
//
LOCUS       DATIQF010000334         1869 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_111916,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000334 DATIQF010000000
VERSION     DATIQF010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111916"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1717
                     /locus_tag="VLL95_05570"
     CDS             <1..1717
                     /locus_tag="VLL95_05570"
                     /inference="COORDINATES: protein motif:HMM:NF026213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alkyl sulfatase dimerization domain-containing
                     protein"
                     /protein_id="HSR38363.1"
                     /translation="FPNGAWANKTLKTDYKMYKAPLSSNFIKKEVVKIAEGIYTINGL
                     YAAYVPVIETKNGVIIYDNGTSPDIGRELLKMLETVTKKPVIAVIYSHSHYIFGGSPI
                     KEKYPNAQFIANPRVASNLASGAGAGSVFPEIGPLLNSGLVQQFHMMLPREGKDAPFG
                     GFISFPDFRGFVRPTTEVTEGQVLNIDGLELQFFTNFNVDSDDQLLVWIPSRKIVLNN
                     AFWGFMPNMYSLRGSNFRDPENITQALFKIRDLGTEVMLSTHGMPVVGKQAVKETVET
                     YADFYNFVKDQTLRAMLLGRAPQDLGKFLKLPQHFRDAEYLCETYGPLETYAEPIYHH
                     GRGWFDNDAANIFKLTREDEAKSLIKAMGGPDRVVQLSDQAVKDGDQMWALKLINYLY
                     VTEPTNQTYRTKKAQLLYQLGMVLESQNARSWCLTQAYALTNKLALPRLVLPDEIANN
                     MNPTTLLTQYKVRIDPEKAGTTNYLLAFAVGDGKKVGLHCRFGVVEFVDDVEKYGQAP
                     NATLTMTQSSLVDLFMNRKPVGQILSEQGNTVKGNSKDVEKFLSYFDEIFSPAINQHI
                     PVLQK"
BASE COUNT          523 a          429 c          465 g          452 t
ORIGIN      
        1 atttccgaat ggagcatggg cgaataagac cctgaagaca gactataaga tgtacaaagc
       61 tccattgtcg tccaatttta tcaaaaagga agtggtaaaa attgcggagg gcatttatac
      121 cattaacggg ttgtatgctg cgtatgtgcc ggttattgaa actaagaacg gggtgatcat
      181 ctatgataat ggcactagtc cagacatagg tcgtgaactg ctgaaaatgc tggaaacggt
      241 aaccaaaaag ccggtcattg cggtgattta tagtcattcc cattacattt ttggcggttc
      301 tcccatcaaa gaaaagtatc ccaatgccca gttcatagcc aatccaaggg tggcatccaa
      361 cctggcgtca ggcgccgggg caggaagtgt ttttcccgag attggccccc tgttgaatag
      421 cggtttggta cagcagtttc acatgatgct tccccgggag ggcaaggatg caccctttgg
      481 aggtttcatc tccttccccg acttcagagg attcgtgagg cctaccaccg aggtgaccga
      541 gggacaggtg ctcaatattg acgggctgga gctccagttc tttaccaatt tcaatgttga
      601 ctcagatgac cagttgctgg tatggattcc aagcaggaaa atagtattga acaatgcatt
      661 ctggggcttt atgcccaata tgtattcttt gcggggttcc aacttcagag accctgaaaa
      721 cattacacag gcgctcttta aaatcaggga cctgggtaca gaagtaatgc tgagtaccca
      781 cggcatgccc gtagtgggca agcaggcggt caaggaaacc gtagagacct atgccgattt
      841 ttacaatttt gtaaaggacc agactttgag ggccatgctg ctgggcaggg ccccgcagga
      901 cctgggcaag tttttgaaat tgcctcagca ttttcgcgat gcggagtatt tgtgtgaaac
      961 ctacggtccc ctcgaaacct atgccgaacc catctatcat catggccgcg gatggtttga
     1021 taatgatgca gccaacattt ttaaacttac acgggaagat gaagcaaaga gcctgatcaa
     1081 agcaatggga ggccctgacc gcgtggtaca gctgagcgac caggccgtca aggacggtga
     1141 ccaaatgtgg gcgctgaaac tcattaacta cctgtatgta accgagccga ccaaccagac
     1201 ttaccgtacc aaaaaagcgc aattgctgta ccaattgggc atggtcctcg aatcgcaaaa
     1261 tgcacgcagc tggtgcctta cacaggctta tgcacttacc aacaaattgg ctttgccgcg
     1321 gttggtattg cctgatgaga tcgcgaataa tatgaatcct accacgctgc ttacccaata
     1381 caaagtaagg atagaccctg aaaaagcggg taccacgaat tacctgctgg cttttgccgt
     1441 aggcgatggc aagaaagttg ggcttcattg ccgttttgga gtggtggagt ttgttgatga
     1501 tgtagaaaaa tacgggcagg cccccaacgc cacccttacc atgactcaat cttccctggt
     1561 tgatcttttc atgaacagaa aacctgttgg ccaaattttg tcagaacaag gcaacacagt
     1621 gaaggggaac agcaaggatg ttgaaaaatt cctgtcgtat ttcgatgaaa tatttagtcc
     1681 tgcaataaat cagcacattc cagtccttca aaaatgatat acaaaatgaa atcaagaatc
     1741 tgtttgttca taatgggtct gctatcacag gccccggtcc ttatggcgca acccaacctc
     1801 aattacccag ggaggtatat gggaaaggaa aatgtgaaga cgatcacggc ccccaatggc
     1861 gcagtagct
//
LOCUS       DATIQF010000335         2466 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_203182,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000335 DATIQF010000000
VERSION     DATIQF010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2466
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203182"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..311
                     /locus_tag="VLL95_05575"
     CDS             <1..311
                     /locus_tag="VLL95_05575"
                     /inference="COORDINATES: protein motif:HMM:NF014611.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HSR38364.1"
                     /translation="LAMSSRNRRLNAAQLKIATAIFETLQWMCKRAYEMPVHDLESAA
                     SERLLLSGFEQVDYASLADAKTLEPLMQPNSGQSLVALIAATVGGVRLIDNMPVPLPA
                     "
     gene            381..728
                     /gene="panD"
                     /locus_tag="VLL95_05580"
     CDS             381..728
                     /gene="panD"
                     /locus_tag="VLL95_05580"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF014332.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004068 - aspartate 1-decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HSR38365.1"
                     /translation="MTIEVLKSKIHRAVVTEANLHYVGSCTIDEDLMEAANLIPNEKI
                     TVVDVDNGNRLDTYVIKGKRGTGVISMNGAAARLVQPGDVVIIMSYARMDFEAAKTFE
                     PRVIFPLEGNKLS"
     gene            801..1805
                     /locus_tag="VLL95_05585"
     CDS             801..1805
                     /locus_tag="VLL95_05585"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HSR38366.1"
                     /translation="MRKINVKAIIQYLLFLGLGLGLIWYSAKDLTPDQIRQLKDSIRQ
                     ARFIYLIPVALSLLLSHYSRTLRWIILMKPLGYKPTVTNTYLAVLLGYFFNMLVPRLG
                     EVMKCTVLARYEKVAPDKLVGTILAERAVDFVSLFLVAIIMVIVQFDRVGAYAIETFS
                     NLVKSKSGEFSWLNFLLTLAVIAILVFGLRWLFKKYGHKGILLRLKVVGQGIMEGIKS
                     LKNIDRKGEFLVHSVVIWALYLIGIYLGFLAFPPVKHLGFQATVSILVFGSLGMIATQ
                     GGIGAYQIAVEKTLKLFGISSVLGLAFGWLIWASQTGIVLLSGVAALIILPIVNRKKL
                     "
     gene            1807..2304
                     /gene="rfaE2"
                     /locus_tag="VLL95_05590"
     CDS             1807..2304
                     /gene="rfaE2"
                     /locus_tag="VLL95_05590"
                     /inference="COORDINATES: protein motif:HMM:TIGR02199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase"
                     /protein_id="HSR38367.1"
                     /translation="MRKADAIPSKIFSLDNLARTIEGWRVKGETIAFTNGVFDLLHEG
                     HIFSLSQAAATASRLVVALNSDDSVKRLKGPTRPVNNEQARALVMASLVMVDAVVIFD
                     DDTPHRVITTLLPDVLVKGGDYTIDQIVGAKEVMAHGGKVIINPLIEGISTTGIIARM
                     QQMHP"
BASE COUNT          617 a          616 c          614 g          619 t
ORIGIN      
        1 ggctggccat gagcagccgc aaccgaagac tgaatgcggc gcaattgaaa atagccaccg
       61 ccattttcga aacactccaa tggatgtgca aaagggcata tgaaatgccg gtgcatgatt
      121 tggaatcggc tgccagtgaa agactcttac tgtcaggttt tgaacaggta gactacgcca
      181 gcctggctga tgccaaaacg ctggagccgt tgatgcagcc caattccggc caatccctgg
      241 tggccctcat cgcagccacc gtgggtggtg tgcggcttat cgataatatg ccggtcccac
      301 tgcccgcctg agtcctgcat tccttaacac agggttcaat ttttttctgc cttactttgc
      361 ctccccaata tttcagattg atgactattg aagtactgaa atcaaagatt caccgtgcag
      421 ttgttacaga agccaactta cattatgtag gcagttgtac cattgatgaa gacctgatgg
      481 aagcggccaa cctgatcccc aacgaaaaga tcaccgtagt agatgtggac aacggcaacc
      541 gtttagacac ctatgtgatc aaaggaaaaa gaggaacagg cgtgatcagt atgaatgggg
      601 ccgccgcaag attggtgcag cccggcgatg tggtcatcat tatgagctat gcccgcatgg
      661 acttcgaggc agccaaaacc tttgaacccc gggtgatctt cccattggaa ggcaacaaac
      721 tctcataagt ccttgggtta ctaacagtcc ttcaaaacca actgcttttt caatgcatgt
      781 acgcctttaa tttagcgagc atgcgaaaaa tcaacgtaaa ggcgattatt caatacctcc
      841 tgtttctcgg gctgggactc ggtcttatct ggtacagcgc caaagacctg acacccgatc
      901 aaatcaggca gctcaaggat tccatcaggc aggcgaggtt catttatctt attcccgtag
      961 ccctttcttt attgctttca cattacagcc gcaccctgcg gtggatcatc ctgatgaagc
     1021 cattaggata taagcccacg gtcaccaaca cctacctcgc cgttttgctg ggctattttt
     1081 tcaatatgct ggtgccaagg ttgggcgaag tgatgaagtg taccgtgctg gcacgttatg
     1141 aaaaagtggc gcccgataag ttggtgggca ccatcctggc cgaaagggcc gttgatttcg
     1201 tcagtctttt tttggtagcc attatcatgg tcatcgttca atttgaccgg gtaggcgctt
     1261 atgcaataga gacgttctcc aatttggtaa aaagcaagag cggagaattt agctggctga
     1321 attttctgct gactttggcg gtcattgcca tccttgtttt tggattacgc tggttattta
     1381 aaaagtacgg acacaaagga atattgctgc gcctcaaggt tgtggggcag ggcatcatgg
     1441 aaggaatcaa gagcctcaag aacattgacc gcaaaggcga attcctggta cactctgtag
     1501 tgatatgggc cttgtatctt atcggcattt acctggggtt cctggccttc ccgcctgtaa
     1561 agcacctggg cttccaggct accgtcagta tccttgtttt tggcagcctg ggtatgatag
     1621 ccacccaggg tggtatcggc gcctaccaga tagccgttga aaaaacactg aagctgtttg
     1681 gcatctccag tgtgttgggc ctggcgtttg gctggctcat ctgggcatct caaacaggta
     1741 ttgttctgct ttcgggagtg gccgccctca tcatactgcc tattgtgaac cggaaaaaac
     1801 tataacatgc gaaaggcaga tgccattcct tccaaaatat tttccctcga caacctggcc
     1861 cgcaccattg agggctggcg ggtaaaagga gaaacgatcg cattcaccaa tggggttttc
     1921 gatctgcttc acgaaggaca catcttttcg ctcagccagg ctgcagccac cgcttcgcgg
     1981 ttggtggtgg cattaaacag cgatgactcc gtaaaacggc tgaagggtcc tacccgacca
     2041 gtcaacaacg aacaggcaag agcattggtg atggcgagcc tggtcatggt ggatgccgtg
     2101 gtaatatttg atgatgacac tccgcatcgt gtcatcacca cgctgctgcc cgatgtgttg
     2161 gtaaaaggag gcgattacac catcgaccaa atcgttggtg ccaaggaggt gatggcccat
     2221 ggcggaaaag tcattatcaa tcccctgatc gaaggcatat ccaccaccgg cattattgcc
     2281 cgcatgcagc aaatgcatcc ctgactttac cacctgccca aaacttaatg caggtcctgc
     2341 aatatcagcg gtacctttgg tcaaattgta tttaccctac ttggtatgag ccctaagaag
     2401 aacattattc cccgcgacat cagctggctg agctttaatg caagagtgct ccaggaagcc
     2461 aacgat
//
LOCUS       DATIQF010000336         1805 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_278940,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000336 DATIQF010000000
VERSION     DATIQF010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1805
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278940"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..656
                     /locus_tag="VLL95_05595"
     CDS             <1..656
                     /locus_tag="VLL95_05595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38368.1"
                     /translation="NSSSRRKQEFIRNIHHISFQPCVTELHALVLEELEIKKLWPLYN
                     RSQKRYSQLFGLYELQDQRGLTRLAVEKRRKHRPAIVSFHQLEAGYLLGRQVMHQFDI
                     DEQLLFVTGHTKPMLDENDIRLHNQKMQEAITYLREQQPSLHIFQRGESPTGAPQVIH
                     YFIVKGMFAGILVTDGDAVPLAAEIKAAVEAVPDNEYVKAMLFRFAASHPDNVIEML"
     gene            715..1182
                     /locus_tag="VLL95_05600"
     CDS             715..1182
                     /locus_tag="VLL95_05600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38369.1"
                     /translation="MIRTSLSVLLISIFAGCANPSEQNEAAVEESTQAPAAITDLRDS
                     VAAQPAASFRKKTPNDLNDWYFSVDLFETKKRFEYVVKMRFEEATGVDTISFPNLGEE
                     PRPVLQQGKSEFSCFIGFLDKEGTFREYKEVSFANDRLKITTLKYYAVSGGNQ"
     gene            complement(1186..1680)
                     /locus_tag="VLL95_05605"
     CDS             complement(1186..1680)
                     /locus_tag="VLL95_05605"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR38370.1"
                     /translation="MPNEVSLLTTMARRTFADAFEALNTPEDFEMYVSANLTEKALGA
                     ELDNPDSAFLWVCHEEQPVAYFKLNHAPAQTDLHDPTGIELERIYTLAEWQGHGIGSL
                     IIQHIEKIARKEGMQFIWLGVWEKNHRAIAFYERHGFRPFGSHVFVLGADEQTDILLR
                     KDLA"
BASE COUNT          483 a          412 c          446 g          464 t
ORIGIN      
        1 acaacagcag cagccggcgc aagcaggagt tcattcgaaa cattcatcac atttcatttc
       61 agccttgtgt taccgaactg cacgcccttg tgctggaaga attggaaata aaaaaactgt
      121 ggccgctgta caaccggagc cagaaacgtt acagccaatt gtttggttta tacgaattgc
      181 aggaccagcg tggcctcaca aggctggcag tagaaaagcg gcgcaagcat aggcctgcca
      241 tcgtaagttt tcaccaactc gaggcgggct acctgttggg acgacaggtt atgcaccagt
      301 ttgatattga tgaacagctt ttgtttgtga ccggccatac aaagcccatg ttggatgaaa
      361 atgatatccg gctccacaac cagaaaatgc aggaagccat tacctattta cgtgaacaac
      421 agcccagcct gcatattttc cagcggggcg aatcaccaac cggagcgccg caggtgattc
      481 attatttcat tgtaaaagga atgtttgcgg gcattttagt gacagatgga gatgccgttc
      541 cactggccgc tgaaataaaa gctgctgtgg aggctgtacc agataatgag tatgtaaaag
      601 ccatgttgtt ccggtttgct gcatcgcatc ccgacaatgt aatcgaaatg ctgtgagtaa
      661 gtgaaaggcc gattggctaa ggttcatatt aagataactg tcgtttattt gtgcatgatc
      721 cgaacaagcc tttctgtcct ccttatttcc atattcgcag gctgtgccaa tccttcagaa
      781 caaaacgagg ctgctgtcga agaaagtacc caggcgcctg ctgccataac tgatttacgc
      841 gattcggtag cggctcaacc agcagccagt ttccgcaaga aaacacccaa cgatttgaat
      901 gactggtatt tttcagtaga tcttttcgaa accaaaaagc gctttgagta cgtggtgaaa
      961 atgcgtttcg aagaggcgac tggtgtggat accatttcct ttcctaattt gggtgaagag
     1021 ccgagaccag tattgcagca ggggaaaagt gaattcagtt gtttcatagg gtttctcgac
     1081 aaagaaggga cattccgtga gtacaaagaa gtatcctttg ccaatgaccg tttgaagatc
     1141 accaccctaa aatactacgc cgtcagcggc ggcaatcaat aggattcagg ccaaatcctt
     1201 acggagcaat atatccgttt gttcgtcggc gcccagcaca aaaacgtgtg atccgaatgg
     1261 cctgaaacca tgccgttcgt aaaacgcgat ggcccggtgg ttcttttccc aaacgcccag
     1321 ccaaatgaat tgcattcctt ctttccgggc gattttctct atgtgctgaa tgatcaggct
     1381 gccgatgcca tgtccctgcc attcagcgag ggtataaatt ctttccagct caatgccggt
     1441 cgggtcatgg agatctgttt gtgccggtgc atgattcaat ttgaaataag ccaccggttg
     1501 ttcctcgtga caaacccaca agaatgcgct gtcagggttg tccagttcgg cacccagggc
     1561 tttttcagtc aggttagccg atacatacat ttcaaaatct tcgggggtat tgagcgcttc
     1621 aaaggcatcg gcaaaggtgc gccgtgccat ggtggtgagt aaagaaactt cgttcggcaa
     1681 aatgcgtctg aattccattc ggcgaaagta aagcagggtg aaattgattt gcgtcagtaa
     1741 ttacaagtga caggtagtct accttgttgg caaattagat tttatgtgca ggtggcttgc
     1801 ttata
//
LOCUS       DATIQF010000337         8060 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_218289,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000337 DATIQF010000000
VERSION     DATIQF010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8060
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218289"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..417)
                     /locus_tag="VLL95_05610"
     CDS             complement(<1..417)
                     /locus_tag="VLL95_05610"
                     /inference="COORDINATES: protein motif:HMM:NF024575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR38371.1"
                     /translation="MEKFIVSARKYRPQTFSSVVGQQHITTTLKNSIRNNTLAHAFLF
                     CGPRGVGKTTCARILAKTINCENLQPDGEACNQCPSCVSFNNGSSLNIHELDAASNNS
                     VEDIRELVTQIRFAPQEGKYKIYIIDEVHMLSQAAFN"
     gene            896..1636
                     /locus_tag="VLL95_05615"
     CDS             896..1636
                     /locus_tag="VLL95_05615"
                     /inference="COORDINATES: protein motif:HMM:NF024957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HSR38372.1"
                     /translation="MIRKTLLTICLSLLIQAAFSQVLISLVFGDKLNTGKIEFGLDGG
                     LSLSTLDGIPGARYRSGLNLGFYFDIKTKNPNWMVSTGVIVKGPMGARGLAPYPLNDP
                     GLDSLFATGSVATQLGYFYVPVTMKYTFKNRIFLRGGIQLGLINGAKDVFTNDVKDQE
                     DLTFKVNRKGDFAALDAGLVAGIGYRLMKGYGMNVGINYYYGVIDVEADDNRPNQFNR
                     AVYFNVGIPIGKGKAEKKMQKQSNNDSN"
     gene            1737..2933
                     /locus_tag="VLL95_05620"
     CDS             1737..2933
                     /locus_tag="VLL95_05620"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HSR38373.1"
                     /translation="MRKDACPEKDLPDVIREWRKKPPMERKDKSGSLLLVPVILKNPA
                     TGFALGAAGQYAFLAKGANSLYSSINGNATVSQLGQIMFQLKNNIYLNDNKVFLSGDW
                     RYFIFSQDTYGLGTSAPIGGVLDYQFGLNGWDVGIDSLQQPMDFNHYRFHQTVSWKVK
                     PSIFIGFGYHFDMFDKIVDHKLDTTLPFYTSHFVFSRKYGFNPNKYIISGVSFNATYD
                     SRDNLVNPYKGFFANVNWRLNPKFLGSANHTNLATVEFRSYHGLSKTTPRHLIGFWFL
                     GNFTIGDPLPYLGLPALGYDQRGRAGRGYVQGRFRGPNMVYAETEYRFPISKCSDLIG
                     GVLFANMTTTTNPGTGEKLFRKVAPAGGFGFRLKVDKHSRTNLQLDFAFGQRSSAVYL
                     GAAETF"
     gene            3014..3454
                     /locus_tag="VLL95_05625"
     CDS             3014..3454
                     /locus_tag="VLL95_05625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38374.1"
                     /translation="MEEIIPLATPEKPAEQAEKKKKKEQKDELALDKMELALYRAQMA
                     MVRTTTTMTTVGFAIYKLLKEKIEKGEDSLAIRITTPRTIAVTLFFAGFLGLTTYSIR
                     HMRSLKKIGRFTKAKLFSGVMLMSYILFLLTVLLLIGTLTNTSN"
     gene            complement(3479..4639)
                     /locus_tag="VLL95_05630"
     CDS             complement(3479..4639)
                     /locus_tag="VLL95_05630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38375.1"
                     /translation="MQIVEVTNERLSKDFLLCPVRLYKNDPNYIRPLDKDVNAVFNPE
                     QNKSFRHGKAMRWLLRDDQGQNIGRIAAFANRRYKNKGDMQPTGCFGFFDCINDQAAA
                     NLLLDTAKDWLKAEGFEAMDGPVNFGERDKFWGLLVEGFTPVPYGMNYNAPYYKELLE
                     NYGCQVFYYQNCYSREVMPRLPEKFYVAHERFEKQPGFSAKHVSKKNLEKFAEDFCTV
                     YNKAWASHEGNKEMSKQQALKMFTLMKPVMDERLAWFAYHHNEPVAMYVSLPDLNQIF
                     RHLDGQFHLWAKLKFLFYKWKGEMTNMTGIVFGVVPEFQGTGIDYFMVVEAAKIIQHQ
                     TPYRYTELQWQGDFNPKMNNISLNLGFSLTRRLATYRYLFDRNQEFRRHPIF"
     gene            complement(4662..6290)
                     /locus_tag="VLL95_05635"
     CDS             complement(4662..6290)
                     /locus_tag="VLL95_05635"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HSR38376.1"
                     /translation="MKCIAIGRLLVILLFSVVILSCGGCGMEQPQHLPAAKPVDTSIT
                     KANAFTEIFLDSTAVYQFITGTKLNKKDSTYVLSFYRQRNYQFAWFDSSGVAEQAYNF
                     INLFKNYRESVGDSSLWVPEFDAAIDKWISDSVAYRGTSEETIAFELMMTYQFFRYAE
                     RAYKGTDAVDPADLGWFIPRKKINPVAFLDTVIISGGRDINQLVPVHPMFERLRKQLE
                     TYTQLARKHPWSPISFKQPKYTVGDSAAEIGLMKQRLVLLGDLTAEDKGDVFTDKTKA
                     GVIAFQDRMGLAADGVAGKGFQTELNVPVSQRIEQILVNMERARWVPKPTGEQFIFVN
                     IPEFKLHAFDSGKQQFEMAVVVGKPATNTVIFNGMMKYVVFAPYWNVPYSIVKNEMGR
                     TAAYFNKRNMEIVGRYRDGLPMVRQKPGPGNSLGKVKFLFPNSYSIYLHDTPSKSLFG
                     QNTLAFSHGCIRVADPSRLAHWVLRFNQEWPYEKIEEAFDYKKETTVNIAKPVPVFIG
                     YFTCWVDQNGKLNFRKDIYGRDKKLADHLFPAGK"
     gene            6375..6584
                     /locus_tag="VLL95_05640"
     CDS             6375..6584
                     /locus_tag="VLL95_05640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38377.1"
                     /translation="MKTKNNGWLGFLAGLAVGVGVYAFLSSPEGKAWLNRMKQKAKDW
                     GEEWEGMAGVFDGEDEAKEAESQTN"
     gene            6595..6990
                     /locus_tag="VLL95_05645"
     CDS             6595..6990
                     /locus_tag="VLL95_05645"
                     /inference="COORDINATES: protein motif:HMM:NF018980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HSR38378.1"
                     /translation="MATAEKEGLFEELQQTIRQAVGDRILLAKMEAAEKTSVLAGKMI
                     FAVLAGALFFFAMLFVSLMGAYYFSQKFDSHFIGFGIVAGFYLLLLVLIIWKGKQWIG
                     RKVEEQIISTIFEQEDQQWEQQQSNTSQS"
     gene            6987..7394
                     /locus_tag="VLL95_05650"
     CDS             6987..7394
                     /locus_tag="VLL95_05650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38379.1"
                     /translation="MIKPYRIQRPIRDLQSLQQEKRNLKAHITRNDEALKDRIQNLPA
                     LAALRTVQQVGSFLVQTSGGKVLASLIGSGIKGKSFWKNILKTAALFAGTEIVKRFAG
                     NRFEEEDEEMDEEVDTPPAGHSKSSQSMPDLSE"
     gene            7808..>8060
                     /locus_tag="VLL95_05655"
     CDS             7808..>8060
                     /locus_tag="VLL95_05655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38380.1"
                     /translation="MPRWSIEIQAGMQGNFFVSSKDYGPNYNRPNFYEFYQKNFLGTV
                     AGADVIYQIDRRSRLGFGYMVSKNKKQVNFVGVNNGFYIV"
BASE COUNT         2121 a         1959 c         1935 g         2045 t
ORIGIN      
        1 gttgaaggca gcctggctca gcatgtgcac ctcatcgatg atatagatct tgtatttgcc
       61 ttcctgcggt gcaaagcgga tttgcgtcac cagttcgcgg atatcctcca cgctgttgtt
      121 gctggcggca tccagttcat ggatgttgag ggaagagcca ttgttgaacg aaacacaact
      181 gggacactgg ttgcaggctt cgccatcggg ctgcaggttt tcgcagttga tggttttggc
      241 cagtatgcgg gcacaggtgg ttttgcccac acccctgggg ccgcaaaaca aaaaagcatg
      301 cgccagcgtg ttgttcctga ttgaattttt gagcgtggtg gtaatatgtt gctgccccac
      361 taccgagcta aaagtttggg ggcgatactt gcgggctgaa acaatgaatt tttccatgag
      421 caaaacaaat gtagggaggc ccctcgttag tgcgcttcgc cgggtggaaa aataagtgga
      481 gaacccgaag ggcaggttgc cgccaattgt ttttccaatc agaagctgcc ggccgaatgg
      541 ccattcatgt gggcagcagc catgcacgcc cctggcaaaa gcaggtcaaa gtattctaac
      601 ccaaatggtt ggtcaactca cctgattgct ggaaattcgc tgggattaac caacaccaac
      661 caatgaaact cgctcccacg ccgtgctgtt gcttttccct ttcgggaatg gccgatacgg
      721 cttatggcct gcaaggtggg caggaagccg acacaatgcc cacggcagga aggatgcgtg
      781 tcttcggttc acggtgtcaa cccaacaact atttcctgat ccctgctaag actggtcgtg
      841 ctggtacacc accaggcacc ccgccagtat gcggtatcaa atctgcctgt aagccatgat
      901 tagaaaaacg ctgctcacta tttgtctttc cctcctcatc caggcggctt ttagccaggt
      961 gctcatatcc ttggtttttg gtgacaaatt gaacaccggg aaaattgaat ttggattgga
     1021 cggcggcctt agtctttcaa cactggatgg gatacccggt gccaggtaca ggtcgggatt
     1081 gaatcttggc ttctatttcg acatcaaaac aaaaaacccc aactggatgg tgagtaccgg
     1141 ggtgatagtg aaaggtccca tgggcgccag ggggctggca ccttacccgc ttaacgaccc
     1201 cggcctggat tcattgtttg ccacaggatc ggtagctaca caattagggt atttttatgt
     1261 gcctgtcacc atgaagtata ctttcaaaaa tcgcattttc ctgaggggag gcatacaact
     1321 gggattgatc aatggcgcca aagatgtatt taccaatgat gtgaaagacc aggaagacct
     1381 caccttcaaa gtgaacagaa aaggggattt tgctgcactt gacgccggcc tggtagcagg
     1441 cattggctac cgactgatga aaggctacgg catgaatgtg ggcatcaatt attactacgg
     1501 agttattgat gtggaggctg atgacaacag acccaatcaa ttcaacaggg cagtatattt
     1561 caatgttggc atacccattg gcaaaggcaa ggcagagaag aaaatgcaaa agcaatcaaa
     1621 taatgacagt aactgattca gcaagcaggg atgcagcgat aaggcgatgg gtttacttgt
     1681 tttgcgtggc aggatattgt ttggttgcga cccatgcaaa aagccaggac acattgatgc
     1741 gtaaagacgc ttgcccggaa aaggacctgc cggatgtcat acgcgaatgg cgcaagaaac
     1801 ccccaatgga aagaaaagac aagagcggtt cgctgcttct ggttcccgtg atcctgaaaa
     1861 acccggctac cggttttgca ttgggtgcag cgggccagta tgcattcctt gccaaaggcg
     1921 ccaatagtct ttacagcagc atcaacggaa atgccaccgt ttcacaactg gggcagatca
     1981 tgttccagtt aaaaaacaac atttacctca acgacaacaa agtgttcctg agtggcgact
     2041 ggcgctattt cattttttcg caggacacct atggccttgg aacaagtgca cccatcggcg
     2101 gtgtgctcga ttatcaattt ggtttgaacg gttgggacgt gggcattgat tcgctgcagc
     2161 aaccgatgga tttcaatcat taccgctttc accaaacagt gtcgtggaag gtaaaaccct
     2221 ccatattcat tggctttggt tatcacttcg acatgttcga caaaatcgtt gaccacaaac
     2281 tggataccac ccttcctttt tacaccagtc attttgtttt ttcacgcaag tatgggttca
     2341 accccaataa gtatatcatc tcaggagtaa gtttcaatgc cacctacgat tcaagagaca
     2401 acctggtgaa cccttacaaa ggtttttttg ccaatgtcaa ctggcgcctc aatcccaaat
     2461 ttctcggctc ggccaaccat accaacctcg ccacagttga atttcgcagt tatcatggcc
     2521 tttcgaaaac cactccccgg cacttgatcg gtttttggtt cctgggcaac tttaccattg
     2581 gcgatcccct gccctacctc ggtttgccgg cactgggcta tgaccagcgg ggccgcgccg
     2641 gaagaggtta tgtgcaagga cgtttcaggg gcccgaatat ggtgtatgcc gaaacggaat
     2701 accgctttcc catctctaag tgctcggacc tgattggtgg tgtattgttt gccaacatga
     2761 ccaccactac caacccggga acaggtgaaa aacttttcag gaaggtagcg ccggcaggtg
     2821 gtttcggatt tcgattgaaa gttgacaaac actcacgcac caacctgcaa cttgatttcg
     2881 cttttggaca aagatcgagt gctgtatacc tgggagcggc agaaaccttc tgattgatca
     2941 tttgatgttc ccacccactc tcattgaaat caaaagttgt taatttcata gacaacattc
     3001 cttaccagtt tttatggaag aaatcattcc tttagcgacg ccagaaaaac cagctgagca
     3061 ggctgaaaaa aagaaaaaga aggagcagaa agacgaactc gcccttgata aaatggagct
     3121 ggcgctgtac cgggcgcaga tggccatggt gcgcactact actactatga ccaccgtggg
     3181 ctttgctatt tacaagctat tgaaagaaaa aattgaaaag ggtgaagata gtttagcaat
     3241 caggataact acccccagaa ccattgcagt tactttgttc tttgccggct ttctcggcct
     3301 caccacctat tcaatcaggc acatgcgctc cctcaaaaag atcgggagat ttacaaaggc
     3361 caaattgttt tcaggtgtaa tgctgatgag ctacatcctt tttctgctta ccgttttgct
     3421 tttgatcggt actttaacaa ataccagcaa ttgatcgaca gtctctccca tgtgatcatc
     3481 agaaaatcgg gtggcgcctg aattcctggt tcctgtcaaa caaataacga taagtcgcca
     3541 aacgcctggt gagactaaat ccgaggttca gcgagatgtt gttcatcttg ggattaaaat
     3601 cgccctgcca ctgcaattcg gtgtaccggt agggtgtttg gtgttgaatg atcttggctg
     3661 cctccaccac catgaaataa tcaatgccag tgccctggaa ttcaggcact actccaaaca
     3721 caattcctgt catattggtc atctctcctt tccatttgta aaacaggaat ttcaatttgg
     3781 cccagaggtg aaactgtcca tccaggtgcc tgaaaatctg gttcaggtcc ggcaggctta
     3841 cgtacatggc caccggctca ttgtggtgat aagcaaacca ggcaaggcgt tcgtccatca
     3901 ccggcttcat gagggtgaac attttcaacg cttgctgctt cgacatttcc ttgttgccct
     3961 cgtggctggc ccatgccttg ttgtacacgg tgcagaaatc ttcggcaaac ttctccaggt
     4021 tctttttgct gacatgtttc gcagaaaatc ctggctgttt ctcgaaacgc tcatgggcga
     4081 catagaattt ttccggcagc cggggcatca cttcccttga ataacaattc tggtaataaa
     4141 aaacctggca accgtaattc tccagcaatt ccttgtagta cggcgcattg taattcatgc
     4201 catacggcac cggggtgaat ccttctacca acagccccca aaacttatcg cgttccccaa
     4261 aattgaccgg cccgtccatg gcttcaaagc cctcagcttt cagccagtct ttggctgtat
     4321 ccagcagcag gttggctgca gcctggtcgt tgatgcaatc gaaaaaacca aaacagccgg
     4381 tgggctgcat gtcgcctttg tttttgtagc ggcggttggc aaaagccgct atgcgaccaa
     4441 tgttctggcc ctgatcatcg cggagcaacc aacgcatagc cttgccatgc ctgaaagact
     4501 tattctgttc cggattgaat acagcattca catccttatc caaaggccgg atatagttgg
     4561 ggtcattttt atacaggcgc accgggcaaa gcaggaaatc cttcgacagt ctttcattgg
     4621 tcacttctac tatctgcatg ctgcaaatgt acaaggctca ttcatttacc ggcagggaac
     4681 aggtgatctg ccagtttttt atcgcggcca tagatgtctt tcctgaagtt gagtttgccg
     4741 ttttgatcga cccagcaggt aaaatagcca atgaacaccg gcaccggttt ggctatgttt
     4801 accgtcgttt cctttttgta atcaaatgcc tcctcaattt tttcataagg ccactcctgg
     4861 ttgaagcgca atacccaatg cgccagcctg gatggatcgg ctaccctgat gcatccgtgg
     4921 ctgaatgcca gggtgttttg cccgaacaac gacttggaag gcgtatcgtg gaggtaaatg
     4981 ctgtagctgt tggggaaaag gaatttgact ttacccaatg aattgcccgg gccaggtttt
     5041 tggcgaacca tcggcaggcc atctctgtag cggcctacta tttccatatt gcgcttattg
     5101 aagtatgctg ccgtgcggcc catttcattt tttacaatgc tgtaaggcac attccaatac
     5161 ggagcaaata ccacatactt catcatgcca ttgaaaataa cagtgttggt agcaggcttg
     5221 cccaccacca ctgccatctc aaattgttgc ttaccgctgt cgaaagcatg gagtttgaat
     5281 tcaggaatgt tcacaaatat gaattgctca cctgtaggct ttggcaccca acgggctctt
     5341 tccatgttca ccaatatctg ctcaatcctt tggctgacgg gcacgttcaa ttccgtttga
     5401 aatccttttc cggccacccc atccgcagcc aggcccatgc gatcctggaa agcgataacg
     5461 ccggcctttg ttttgtctgt aaatacatcg cctttatcct cggccgtcaa gtcaccaagc
     5521 aaaaccaacc gttgcttcat caacccgatt tccgcagcgg aatcgcctac tgtatactta
     5581 ggctgcttga acgaaatggg cgaccaggga tgctttcttg ccaattgggt ataggtttcc
     5641 agttgtttcc tcagcctttc gaacatcggg tgcaccggca ccagttgatt aatgtctctc
     5701 cctcctgaga tgataacggt atcgaggaat gcgaccgggt ttattttctt gcggggaatg
     5761 aaccagccaa gatcggcggg gtccaccgca tcggtgcctt tgtatgcccg ctcagcatac
     5821 ctgaagaact ggtaggtcat catcagctca aaggcgattg tttcttctga ggttccccgg
     5881 taagccaccg aatcggaaat ccatttatca atagccgcat cgaactcagg cacccatagg
     5941 gaagaatcgc ccactgattc acggtagttc ttgaacaggt tgatgaagtt gtaggcctgt
     6001 tctgccacac cgctgctgtc gaaccaggca aactggtaat tgcgctgccg gtaaaaactg
     6061 agcacatagg tgctgtcttt tttattgagc ttggttccgg taatgaattg atacactgcc
     6121 gtgctgtcga ggaatatttc tgtgaatgca ttggccttcg taatgctggt gtccacaggt
     6181 ttggctgccg gcaaatgctg gggttgttcc ataccacagc cgccacagga aagtatgaca
     6241 acagaaaaca aaagaataac caatagcctg ccaatagcaa tgcacttcat aggaaaggat
     6301 ttacctgaaa gataacaatg ctcatggtct gactggccaa ttttcattaa ttttcaatgg
     6361 cttaaacaga gagcatgaaa acaaaaaaca atggctggct gggctttctc gcaggattgg
     6421 ctgtaggagt tggcgtttat gccttcctga gttcgcccga aggaaaagcc tggctgaaca
     6481 ggatgaagca aaaagcgaag gactggggtg aggaatggga aggcatggcc ggcgtatttg
     6541 acggagaaga cgaggccaag gaagcagaat cgcagaccaa ctaaatagaa tgccatggca
     6601 acagcagaaa aagaaggact ctttgaagaa ctgcagcaaa ccatcaggca agcagtaggc
     6661 gaccgcattt tactggccaa aatggaagcg gccgagaaaa cctctgtgct ggccggcaaa
     6721 atgatcttcg cggttttggc tggggcattg tttttcttcg ccatgctttt cgtcagcctc
     6781 atgggcgcct attacttttc acaaaaattc gacagccact tcatcgggtt cggcattgtg
     6841 gccggatttt acctgctctt gttggtattg atcatttgga aagggaaaca gtggattggc
     6901 aggaaggtgg aagaacagat catcagcacc atttttgaac aagaggatca acaatgggag
     6961 caacagcaaa gcaacacttc gcaatcatga tcaagccgta tcgcatacaa cgtcctattc
     7021 gcgacctgca atcgctgcag caggaaaagc ggaacctgaa ggcgcacatc acaaggaacg
     7081 atgaggcgct caaggatcgc attcaaaacc tgcccgcact ggcagcgctg cgcaccgtgc
     7141 agcaggtggg ctcttttttg gtgcaaacca gcggcggcaa agtcctggcc tccttaattg
     7201 gctcgggcat caagggcaaa agcttctgga agaacatcct gaaaacagcg gccttgtttg
     7261 ccggtacaga gatcgtaaaa cgatttgccg gcaatcgctt tgaagaagaa gacgaagaaa
     7321 tggatgaaga ggttgatacc ccacctgccg gccactccaa aagcagccag tccatgcccg
     7381 accttagtga atagccgcta agtgccgcat tagccaatag gcacttggca aatccttccc
     7441 ttccaaaaat gaatacctga aacagcaggg taaacactcc gtttgaaaac atcctgtaag
     7501 ccggacggag tccggatgaa tttaaagaca caagtgaccc gctaaagctg cacactggcg
     7561 caagtttagg ccattttgat aaatgtcaaa aaaaatagca tgcctacatt ttttaaagaa
     7621 aaaagacata gatatgcaga aatgcttttt tttgatgatt cgacaaagta ccacagaata
     7681 acttcgaaga tggcactgga attcgattca atcaaaaatt cggacaatgc gattttacat
     7741 ttgcttcact ctttcacttt tctatataac cggaaaatca caacttggaa cgccatcaac
     7801 tgacaccttg cctcgctggt cgattgaaat acaggccggt atgcagggca atttttttgt
     7861 aagtagtaag gactatggtc ccaattataa tcgccccaat ttttatgaat tctaccagaa
     7921 gaattttctg ggcactgtag ctggagcaga tgtaatttac caaatagaca ggcggtcgcg
     7981 tcttggcttt ggttatatgg tttccaaaaa caaaaagcag gtaaactttg tgggcgtcaa
     8041 taatggcttt tacatcgtcg
//
LOCUS       DATIQF010000338         3150 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_96450, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000338 DATIQF010000000
VERSION     DATIQF010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3150
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96450"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..284
                     /locus_tag="VLL95_05660"
     CDS             <1..284
                     /locus_tag="VLL95_05660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38381.1"
                     /translation="LAILQNVPRMINGKIVNSIFVNAKGEAVYTGYKEEGSFIQPLSP
                     TAIRFGGKLAILGGTGKFANASGEGDFLGQFNPQNQDDAWYTVNGWISY"
     gene            492..917
                     /locus_tag="VLL95_05665"
     CDS             492..917
                     /locus_tag="VLL95_05665"
                     /inference="COORDINATES: protein motif:HMM:NF025491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4293 family protein"
                     /protein_id="HSR38382.1"
                     /translation="MIQRIQSLWLLLAAAASALLYKWPIYGGELLAGGNREMLIRESL
                     LLLIVNVVLVLFPLVALAQFKNRSNQKKLIFVSLLLQAVFIGLIWMEANEFAAKFPLK
                     KGGYHLAATLPVVAMVLLLLALSGIRKDEKLIKSADRLR"
     gene            complement(973..1719)
                     /locus_tag="VLL95_05670"
     CDS             complement(973..1719)
                     /locus_tag="VLL95_05670"
                     /inference="COORDINATES: protein motif:HMM:NF025029.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase catalytic domain
                     family protein"
                     /protein_id="HSR38383.1"
                     /translation="MERYVKKTGILIYTALLATVLLLTHEVSSKSGGWTPASDSAALG
                     NNTKTLAEEIYTQSGLASTGLPLSVFQKAYTGYATLKAKGQVKKEILTIADMSKVSGN
                     KRLYIVDMRTRQILKHTWVAHGRNSGDRMAMQFSNRPSSLQSSLGFYVTSNTYMGGNG
                     YSLQLVGLEKGFNDNAFSRAIVMHGAPYVNEQLASTGRIGRSWGCPAVSQKEHKEIID
                     LIKGGSCLFIYAEQPQYLAKSELLNSNTSL"
     gene            complement(1823..>3150)
                     /gene="accC"
                     /locus_tag="VLL95_05675"
     CDS             complement(1823..>3150)
                     /gene="accC"
                     /locus_tag="VLL95_05675"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HSR38384.1"
                     /translation="NRGEIAVRLIRACHEMGIAAVVVYSDVDRASLHVRKADEAYHIG
                     PPAATESYLNIQKILDVADRSGADAIHPGYGFLAENALFSEVCDQNGLKFIGPTPDQI
                     KAMGDKITAKETMIKAGVPVIPGSEGLLESLEQAIDLAKNTVGYPVILKATAGGGGKG
                     MRVVWAEEEMDRAYHTAKAEALAAFKNDGIYMEKFVEEPRHIEIQVAGDQFGTVCHLS
                     ERDCSIQRRHQKLVEESPSPFMTPELREAMGEAAKKAASAINYEGVGTVEFLVDKYRN
                     FYFMEMNTRIQVEHCVTEEVINFDLIKEQIKIAAGIRISGRDYVPQDMHAIECRINAE
                     DPFNDFRPSPGKITVLHTPGGHGVRVDSHVYAGYTIPPYYDSMIGKLITVARTRNEAI
                     DTMYRALSEYVIEGVKTTIPFHLQLMKDDRFRAGDFNTKFLESFDLKAP"
BASE COUNT          712 a          762 c          811 g          865 t
ORIGIN      
        1 accttgcaat attgcaaaat gtacctcgca tgataaatgg gaaaatcgtg aattcgattt
       61 ttgttaatgc caagggtgaa gccgtttaca ccgggtacaa agaggaaggt agtttcatac
      121 agccgctgtc tcccacggct atccggtttg gaggaaaact agccatcttg ggcggcaccg
      181 gcaaatttgc caatgccagc ggcgaaggag attttctcgg ccagttcaat cctcaaaacc
      241 aagacgacgc ctggtacact gtgaatggct ggatcagcta ttgatcagca atagtcatgt
      301 agctatcctc tatcaggctt cgtacacctt cttgcacacc acccccttta caggccctgt
      361 cattgttttg caatgagggg cttgtttttt gcaatgaatt tgccctctat tggagaatgc
      421 tcttttattc aagcgattcg cggtgcgcat taatgcatga atctgtattt tgcgaagcat
      481 aattcttaat catgattcaa cgtatccaat cactttggtt gctcctggca gctgctgctt
      541 cagctttgtt gtacaaatgg cctatatatg gtggggagtt attggcagga ggcaatagag
      601 aaatgttgat cagagaaagt ttgctcctgc tgatcgtaaa tgttgtcctg gtgctttttc
      661 cacttgtagc tttggctcag ttcaagaaca ggagcaatca gaaaaaactc atctttgtaa
      721 gccttctgtt gcaagccgtt ttcattggcc ttatctggat ggaagcaaat gagtttgctg
      781 cgaaatttcc tttgaagaag ggcgggtacc atttggcggc caccctgccg gtggtagcaa
      841 tggttttgtt gttgctggca ttgtccggca ttcggaaaga cgaaaaactg atcaagagcg
      901 ctgatcgttt gcgataaaaa aaatcgatac gcaatatgca acagcggcac cttgaagaag
      961 gtgccgctgt ttttacaatg aagtgttgct attaagcaat tccgacttcg ccaggtactg
     1021 cggttgttcg gcgtaaataa acaggcaact gccccctttg atcaggtcga tgatctcctt
     1081 gtgttccttt tgtgatacgg cagggcagcc ccagctgcgg ccaatgcggc cggtgctggc
     1141 caattgctca ttcacataag gggctccgtg cattacaatt gcccggctga aagcattgtc
     1201 attaaatcct ttttcaagcc ctaccagttg aagggagtag ccattgccac ccatataggt
     1261 attgctggtg acataaaagc caaggctgct ttgcaaagaa gaaggcctgt tggaaaattg
     1321 catggccatg cggtcgccgc tgttgcgccc atgtgccacc caggtatgtt tcaggatttg
     1381 gcgggttcgc atgtcaacaa tgtacaagcg tttgttgccc gacactttgc tcatgtcggc
     1441 tatggtaagt atttcttttt ttacctggcc ttttgctttg agcgtggcat agccggtgta
     1501 ggctttttga aaaacggaca gcggcaatcc ggtggatgct aaaccacttt gggtgtaaat
     1561 ctcttccgct aatgtttttg tgttgtttcc taaagcagca gaatcgctgg cgggtgtcca
     1621 tccacctgat ttggaagaca cttcatgggt caataataaa accgtggcta ataaggcagt
     1681 ataaatcaat atgccggttt tcttcacata acgctccatc acaatatcgt tttaaggcat
     1741 aaaaaaaact aacccccggt gagggattag ttttggttgt ggcaaaggta ttatcccccg
     1801 ccaaaatggc ttgttaatgt aattatggcg ccttcaggtc gaacgactcg aggaacttgg
     1861 tgttgaaatc gcctgccctg aatcggtcat ccttcatcag ttgcaggtgg aaggggatgg
     1921 tcgttttaac accctcaatc acgtattcgc tcagggcacg atacatggtg tcaatggcct
     1981 cattacgggt gcgggccact gtgatcagct tgccgatcat gctgtcgtag tagggaggaa
     2041 tagtgtagcc ggcatatacg tggctgtcca cccttacgcc atggccgccg ggtgtatgca
     2101 aaacggtgat cttaccgggg ctgggacgga aatcattgaa cggatcttcc gcattgatgc
     2161 ggcattcaat ggcatgcatg tcctgtggta catagtcgcg gccgctgatg cggatgccgg
     2221 cggcaatctt gatttgttct ttgatcaggt caaagttgat cacttcttct gtcacgcagt
     2281 gttctacctg gatacgggtg ttcatttcca tgaagtagaa attgcggtat ttgtctacca
     2341 ggaactctac ggttcctacc ccttcgtagt tgatggcaga agccgccttc ttagccgctt
     2401 cacccatggc ttcccgcagt tcaggcgtca tgaaaggaga ggggctttcc tccaccagtt
     2461 tctggtgcct gcgctggatc gaacaatccc tttcgctgag gtggcaaacg gtgccaaact
     2521 ggtcgccggc aacctgtatc tcgatgtggc ggggctcctc cacgaatttc tccatgtaaa
     2581 tgccatcgtt cttaaaggct gccagtgcct ccgctttggc tgtatggtag gcacggtcca
     2641 tttcttcctc agcccaaacc acccgcatgc ccttgccacc gccacctgct gtggctttaa
     2701 ggattactgg gtagcccacg gtattcttgg ccaggtcaat ggcttgctcc aggctttcca
     2761 gcaagccttc gctgcccgga atgacaggaa cgccggcctt gatcattgtt tccttggcag
     2821 tgatcttgtc gcccatggcc ttaatttggt caggggtggg gcctatgaat ttgagcccat
     2881 tctggtcaca tacttcggag aacaatgcat tctctgccag gaatccatac ccggggtgaa
     2941 tggcatcggc tcccgaacga tcggcgacat cgagaatctt ctggatattg agatacgatt
     3001 cggtcgcagc aggcggcccg atgtgatagg cctcgtccgc cttgcggacg tgtaaggacg
     3061 cacgatcgac gtcggagtag actacgacgg cggcaatgcc catttcgtgg cacgcgcgga
     3121 tcaagcgtac cgcgatttcg ccacgatttg
//
LOCUS       DATIQF010000339         2759 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_66165, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000339 DATIQF010000000
VERSION     DATIQF010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2759
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66165"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            380..1159
                     /locus_tag="VLL95_05680"
     CDS             380..1159
                     /locus_tag="VLL95_05680"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HSR38385.1"
                     /translation="MVANIEDARKRLVSIWSEFQSQSLTKEELEAFLAQSRVLDQTER
                     SNIRTVIFSYHDFTIHHINPGTARYFGSTPEEIIGEGAQYIMSCVHPIQVEAAILNTI
                     PISTKLYSDSHLLWRSYHASYVNCSITCRKGNRHRSLFHAFPILFDEQGKPQLGMFLI
                     YDLEPFIADGVWWFRYKIGEQVFLFHHDSGKLEETDILSPRELEILQLISEGATSKEI
                     ASQLFLSANTVDNHRRNMLKRTGAVDTSALIHICKLCQIIE"
     gene            complement(1182..>2759)
                     /locus_tag="VLL95_05685"
     CDS             complement(1182..>2759)
                     /locus_tag="VLL95_05685"
                     /inference="COORDINATES: protein motif:HMM:NF039587.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5916 domain-containing protein"
                     /protein_id="HSR38386.1"
                     /translation="FRSYDLGYTGAMYWEQAPPKAGSNIALIPYVTGQVTSDNSSGKQ
                     DYNAKANAGFDAKIGLTSSLNLDLTVNPDFSQIEVDQQVTNFTRFNIFLPERRTFFLE
                     NSDLFAAYGIPPIRPFYSRQIGLDANNLPIPILGGARITGNLSPSTRIGLMNMQTGSK
                     GDYKMENFTAASVNQRVLKRSVVKAYFLNRQGFLSDEEKKADPLAAYGRNAGTEFNYT
                     NVAGTFSAWGAYHKSFKPAITDKDAYVDMGFEYNTRKFSVVVDAVDVGTNYYTDMGFV
                     QRIENYDAEKDTTIRLGFRHLFGQMSYSLFPRKGKINTHRFRQENYMVWNPDGTLNER
                     NHELSYIIQFRNTANFFAGPGYNEVNLLFPISFTGGKPLPAGNYQYWRGFAGYESDFR
                     KKIQYTARVSTGEFYNGTFTTVSGSIIYRNPPHVSVAVQAEYNSLSFPGDYGSASLVL
                     ISPRIDINFTTSIFWTTFLQYNTQANNFNINSRFQWRFRPMSDLYLVYTDNYFTDPLL
                     KNKNRALVLKMNYWLNI"
BASE COUNT          720 a          662 c          684 g          693 t
ORIGIN      
        1 gggcaatggg tggcatcggg atggtacttg ttttgaaacc tgggcgattt tccaggcgga
       61 aagaaaacct gtgcccgatc aattgcccca caaatagttg aaaatgaagc tgataggcca
      121 aaacaatcct ccatccagac cgacctcctg aataaaaaaa ccaagccttt caggcctggt
      181 tttcttcgac aagcatttgt ggggtttttg aaaacggagt tgcagagatt gcttccttta
      241 ccaaaatgaa cagggcgtct gtgtggctga cgccctgtca tttaaacgga cttaatggta
      301 aatggtagga caaatgtgcc cagaatctga aagttgtcca atagtcaaaa tggttatttt
      361 tacgaattca tgacggaata tggtcgcaaa cattgaggac gcacgaaaac ggttggtcag
      421 catttggagt gagtttcaat cccaatcgct gacaaaagag gagctggagg cattcctggc
      481 gcagtcccgt gtactcgatc aaaccgaaag aagcaacatc cgtacggtca tattcagcta
      541 ccacgatttt accatacacc acatcaaccc cggcacagct cgttattttg ggtcaacccc
      601 ggaagagatc attggggaag gagcgcagta catcatgagt tgtgtacatc ccatccaggt
      661 ggaagctgcc attcttaata ccatccccat ttccaccaag ctctacagcg atagccacct
      721 attgtggcgg agctaccatg ccagctatgt caattgtagc ataacctgtc gcaagggcaa
      781 ccggcaccgg tctctttttc acgccttccc catcctgttc gacgaacagg gcaaaccgca
      841 gttgggcatg ttccttattt acgacctcga accatttatt gcagatggag tatggtggtt
      901 tcgatacaag ataggagagc aggtattcct gtttcaccac gactcgggca aactggaaga
      961 aaccgatatt ctctcccccc gtgaactgga gatattgcaa ttgatttcgg aaggcgctac
     1021 ctccaaagaa attgccagcc agcttttttt gagcgccaat accgtagaca atcaccggcg
     1081 caatatgctc aagcgtaccg gggcggtcga caccagcgcc ctcattcaca tctgcaaact
     1141 ctgccagatc attgaatgaa ctttgccatg agtgcaggca attaaatatt caaccagtag
     1201 ttcattttca gcaccaatgc cctgttcttg tttttcagca aggggtcggt gaaatagttg
     1261 tcggtatata caaggtacag gtcgctcatg ggccggaatc gccattgaaa gcggctgttg
     1321 atgttgaagt tattcgcctg ggtattgtat tgcaaaaagg tagtccagaa aatactggtg
     1381 gtgaaattga tgtcgatgcg tggcgaaata agcaccaggc tggcagaccc atagtcaccg
     1441 ggaaaggaaa ggctgttgta ctcagcctgc accgccacac ttacatgggg cgggttacgg
     1501 taaataatgg agcctgatac ggtggtaaat gtgccgttgt aaaattcgcc ggtactcaca
     1561 cgggctgtat actggatctt tttcctgaaa tcggactcat accctgcaaa accccgccag
     1621 tattgataat tccctgccgg caaaggtttg ccgccggtaa atgaaatggg aaaaaggaga
     1681 ttcacctcgt tgtaaccagg gcccgcaaaa aagttcgccg tgttcctgaa ctgaatgata
     1741 tacgacaatt cgtgattgcg ttcattgagt gttccgtcgg gattccaaac catatagttt
     1801 tcctgccgga aacgatgggt attgattttt cctttcctgg ggaaaaggct gtagctcatt
     1861 tgcccaaaca agtgacgaaa ccccaggcgg atagtggtgt ctttttcggc atcgtaattc
     1921 tcaatgcgct gcacaaaacc catgtcggta tagtagttgg tgccaacatc tacggcatcc
     1981 accaccacac tgaacttccg ggtgttatac tcaaagccca tgtccacata ggcatctttg
     2041 tcggtaatgg caggcttgaa gcttttgtgg taggcacccc atgcactaaa ggttccggcc
     2101 acattggtat agttgaattc ggttccggca ttgcgtccat aggctgcgag ggggtcggcc
     2161 ttcttttctt catcgctcag gaagccttgc ctgttgagaa aataggcctt taccaccgaa
     2221 cgcttcagta cccgctgatt gacactggca gcagtgaaat tctccatttt gtaatctccc
     2281 ttgctgcccg tttgcatgtt catcaaacca atacgggtgg agggagataa attgccggtg
     2341 atacgggccc ctcccaaaat ggggatcggc aaattgttgg catccaggcc aatttgccgc
     2401 gaataaaatg gccgtatggg gggtatgcca taggcggcaa acaggtcact gttttcaaga
     2461 aaaaatgtgc ggcgctccgg aagaaaaata ttgaaccgcg taaaattggt tacctgctgg
     2521 tctacctcga tctgggaaaa atcgggattt acagtcaggt ctaagttcag cgaagaagtg
     2581 agaccaatct tggcatcaaa accggcattg gcctttgcat tgtagtcctg cttgccactg
     2641 ctgttatccg aggttacctg gccggttaca taagggatga gggcaatatt actgccggcc
     2701 ttgggtggag cctgctccca atacatggcg cctgtatagc ccaggtcgta actgcggaa
//
LOCUS       DATIQF010000340         3370 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_233621,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000340 DATIQF010000000
VERSION     DATIQF010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3370)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3370)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3370
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233621"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1513
                     /locus_tag="VLL95_05690"
     CDS             <1..1513
                     /locus_tag="VLL95_05690"
                     /inference="COORDINATES: protein motif:HMM:NF012892.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HSR38387.1"
                     /translation="HMGDAMDVALLGMAIKGGVEPASFRKDFPLADKIPYESERKFSA
                     GFASVDNEIIVAAKGAVETILDFCTEMAAGGTSIPVQRDSIIRQAGEMAAKGYRVLAF
                     AKVHFPNFKKKDGYTNAELPPLTFYGLVCFIDPLRPEAKQSVLTCKKAGIKVLMITGD
                     HPATAGTIAAELGIATDGMPVVTGQMLSEAEPADSPAFEKLVASTTVFARVSPIQKLK
                     IVDVLIRDGEFVAVTGDGVNDAPALKRANIGVAMGSGTDVAKEVGSMIVIDDNFSSIV
                     AGVEEGRFAYDNVRKVIYLLISTGGASVLIIIASILAGLPLPFVPVQLLWLNIVTNGI
                     QDVALAFEGGEPGAMMKPPRRTTETIFNAVMINGTVAAALTMGSLVFGLWYYLNNHTD
                     MAESSARNLILLLFVCLQNFHVFNARSETTSALRIPLSRNIVLALGVLAAQALHIISM
                     QIPLMQEILQIEPVSFRQWLYIIGLALPIVVTMEVFKAFVRKKHPFPVPPNPS"
     gene            1631..2464
                     /locus_tag="VLL95_05695"
     CDS             1631..2464
                     /locus_tag="VLL95_05695"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HSR38388.1"
                     /translation="MKNIIAPIDFSPVSINAAKYAANMAAALNKDLVLFHVVQIPVVY
                     GEVPMPMGEFDATQAEAQEEMEKLVRQIDEEMAGQVVIHTTMKVGSPVYELIQQSKAH
                     GVYAIVMGTHGAGAMERFFLGSTTTSLIREASCPVIVIPPDYKFSRPKKIGLASDFKD
                     VVKYTPQKAILKLLDTFDAQLEILHSDPDYKEFEPAAMEEGLMLDTMFEVHRPKFQFL
                     HSGYTEESILHYAAENAIDLLIIVPKEHGIIDSIFKHQHTGSFVRNATLPVMVLKGDS
                     E"
     gene            complement(2559..2951)
                     /locus_tag="VLL95_05700"
     CDS             complement(2559..2951)
                     /locus_tag="VLL95_05700"
                     /inference="COORDINATES: protein motif:HMM:NF016156.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HSR38389.1"
                     /translation="MTSKTVFWGAVLAGTAVAFGAFGSHVLKERLEPEQIATFQTGVL
                     YHMFHSLALVATGIFYRIKPGKRLVNAAFAFYLGIGLFSGSLYLMTFSAFTHIDLRWL
                     GAITPIGGISFLVGWAQLAWGAESQVKK"
     gene            complement(2965..>3370)
                     /locus_tag="VLL95_05705"
     CDS             complement(2965..>3370)
                     /locus_tag="VLL95_05705"
                     /inference="COORDINATES: protein motif:HMM:NF013375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HSR38390.1"
                     /translation="SSIASLFANKGEDHFRQLETELLKHGLPDRDSVISTGGGMPCFH
                     QNIDLMLEKGVVVWLAPDLPTIAERIWRHKEKRPLIAHCEHLEEVVGKLQELQDRRTP
                     YYSKADIVENEVVVDLPALIRRIETVGKFAIR"
BASE COUNT          942 a          830 c          765 g          833 t
ORIGIN      
        1 gcacatggga gatgctatgg atgtggcatt gcttggcatg gccattaaag gaggggtgga
       61 accagcatct ttcagaaaag actttccact ggctgacaaa ataccgtacg aatcagaaag
      121 aaagttctca gcaggctttg ccagcgttga caacgagatt atagttgcag ctaaaggcgc
      181 tgtggaaacc atactggact tctgcactga aatggcagcc ggtggcacca gcatccccgt
      241 gcaacgagac tcgattataa gacaggcagg agaaatggca gcaaaaggtt acagggtgct
      301 ggcatttgca aaagtccact tcccgaattt caagaaaaaa gacgggtata ctaatgctga
      361 attgccacct ctgacctttt acggcctggt atgttttatt gacccgttaa gaccagaagc
      421 aaaacaaagc gttcttacct gcaagaaggc tggtataaaa gtgttgatga ttaccggtga
      481 ccatccagca acagctggga ccattgccgc cgaattgggc attgccactg atggaatgcc
      541 ggtggtgaca gggcaaatgc tcagcgaagc tgaacctgca gacagccccg ccttcgaaaa
      601 actcgttgca tccaccacag tatttgcaag ggtttcgccc atccaaaaac tgaaaattgt
      661 agacgtattg attcgggatg gagaatttgt agccgtgaca ggtgatggtg taaatgatgc
      721 tccagcgctc aaacgtgcca acattggagt agccatgggc agtggaactg atgtagcaaa
      781 ggaagtagga tcaatgatcg taattgatga caacttctct tcaattgttg caggagtaga
      841 agaaggaagg tttgcctacg acaatgtgcg caaggttatc tacctgctta tttctacagg
      901 aggcgcttct gtccttatca ttattgcctc cattttggct ggcctcccac taccctttgt
      961 tcctgtacaa ttactgtggc tcaatattgt aaccaatggc attcaagatg tagccctggc
     1021 ttttgaagga ggtgaaccag gggccatgat gaagcccccc cgcagaacca ccgaaaccat
     1081 tttcaacgct gtcatgatca atggaacggt tgcagcagca cttactatgg ggagccttgt
     1141 gtttggctta tggtactatc tcaacaatca tactgatatg gccgaatcgt cagcccggaa
     1201 tctgatactg ttattgtttg tgtgcctgca aaattttcat gtattcaatg cacgatcaga
     1261 aaccacttct gcactgcgga taccactgag caggaacata gtgctggctt tgggcgtatt
     1321 ggcggcacag gctttgcata ttataagtat gcaaatacct cttatgcagg aaatattgca
     1381 gatcgaaccg gtgtccttcc ggcaatggct ttacatcatc ggcctggcct tacccatcgt
     1441 tgtcacaatg gaggtattta aggcctttgt gcgaaagaag cacccgtttc ctgtgccccc
     1501 aaacccttca tgaaacagct ctggctggtg gcttaggcct tatgataata atcatggaag
     1561 ccccaaggag gtgccagtac ctttatggca agcaactaaa ctatcctggt actttttaaa
     1621 agcaaacggt atgaaaaaca taattgcccc catcgatttt tcgcccgtat ccatcaacgc
     1681 tgcaaaatat gcagccaaca tggcagctgc actcaacaag gatttggttc tgtttcacgt
     1741 ggtgcagatc cctgtagtat acggcgaagt acccatgccc atgggcgaat ttgatgccac
     1801 ccaggccgaa gcccaggaag aaatggaaaa actggttcgc caaatagacg aggaaatggc
     1861 cggacaagtg gtcattcata ctaccatgaa agtgggcagc ccggtgtatg aactcatcca
     1921 gcaaagcaaa gcgcatggtg tatatgccat agtgatggga acacacggtg ccggcgccat
     1981 ggagaggttc tttttgggct caaccactac cagccttatc cgcgaagcct cctgccctgt
     2041 catagttatt ccgcctgatt acaaattcag caggcccaaa aaaattggac tcgccagcga
     2101 tttcaaagac gtagtaaagt atacaccaca aaaagccatt ctcaaactgc tcgacacctt
     2161 tgatgcgcag cttgagatac tgcattccga tcctgactac aaagaatttg aaccggcagc
     2221 catggaagaa ggcctgatgc tggataccat gttcgaagtg caccgaccca aatttcaatt
     2281 cctgcacagc ggatacaccg aagaaagcat cttgcactat gctgctgaaa atgcgatcga
     2341 cctgttgatc attgttccca aggaacatgg cataattgac agcattttca aacaccagca
     2401 tacgggctca ttcgtacgta atgccaccct gcctgttatg gtgcttaaag gcgattccga
     2461 ataatgacca tttctttcta attaaccttc aaacaacccg gtaataaaag gccactccga
     2521 aaagtggcct ttttaattag aaggtgaacc ttgtgctttt attttttaac ctgcgattca
     2581 gctccccagg ccaactgcgc ccaacccacc aaaaaagata ttcctccaat gggggtaatg
     2641 gcacccagcc agcgtaaatc tatgtgggtg aaagcactaa acgtcatcag gtaaagtgaa
     2701 cctgaaaaca aaccaatgcc gagataaaac gcaaatgctg catttaccag ccttttgccg
     2761 ggcttaatcc tgtagaaaat acctgtggcc acaagagcaa gtgaatgaaa catatggtac
     2821 aaaacaccag tttgaaacgt ggcgatttgt tcaggctcca gcctttcctt gagcacatgc
     2881 gaaccaaagg caccgaatgc caccgctgtt cctgccaaca cagcccccca gaatacagtt
     2941 ttacttgtca tacccctttg ctatttatct gatggcaaat ttgccaactg tttcaatacg
     3001 cctgatcaaa gcaggcaggt caaccaccac ttcattttcc acaatatctg cttttgaata
     3061 gtatggcgtc cttcggtcct gcaattcctg cagttttccc accacttctt ccaaatgctc
     3121 gcaatgagcg atcagcggcc tcttttcctt gtgtcgccag atgcgctcag caatagtggg
     3181 caggtcaggt gccagccaaa ctaccacccc tttttcgagc attaagtcga tgttttgatg
     3241 aaaacatggc atgccaccac cggtggaaat gacagaatct ctatccggta aaccatgctt
     3301 cagcagctct gtttccaatt gtcggaaatg atcttcgcct ttattggcaa agaggctggc
     3361 aatgcttgaa
//
LOCUS       DATIQF010000341         1980 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_20831, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000341 DATIQF010000000
VERSION     DATIQF010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1980
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20831"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1294)
                     /locus_tag="VLL95_05710"
     CDS             complement(<1..1294)
                     /locus_tag="VLL95_05710"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR38391.1"
                     /translation="MNAFPLFVLSLFTSITLYGQHTSLKGKVTDQRKRPLVGASVSIE
                     GSYDGTTTDSLGVFAFTSSERDTQTLVISSMGYKKWEQKVKLAGAPISLEISLREEPN
                     ELTAVVITAGSFEAGDQKKTTVLKPLDIVTTASANADVTAAMKTLPGTQQVGESAELF
                     VRGGEGYETRQFIDGTTVANPFFGQAPNIASRGRFSPFLFKGTVFSTGGYSALYGQAL
                     SSALILESIDLPERTSASASVSPLFLGAQYQHLDSAKTNSWGASAGYTNVGLYFKMVP
                     QRPDYFHAPEVWNGDANFRIKTSKTGMLKFYGSYASNRLGLRNPDIDLPDLKNAFQLV
                     NDNIYTNLSYRERLSNRWKLNAGFSWSRDTQNINSEVQDEENNPVTGQLPLYVAARNY
                     DLKTKANLFQTKAVLEYKLKGLSALRFGTEYWYSSDYSK"
     gene            1451..1861
                     /locus_tag="VLL95_05715"
     CDS             1451..1861
                     /locus_tag="VLL95_05715"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HSR38392.1"
                     /translation="MKVADILRRKGANVVFITPGASVIDALHIMEEKNIGSVVVMENS
                     QYKGIVTERDYSRKVILKGKNSSDTPVSEIMTTDLPAVSPDDSIDKCMELMSNKHIRY
                     LPVFDAGGQLAGIISMSDVVGAKLIRQQETISHL"
BASE COUNT          505 a          463 c          489 g          523 t
ORIGIN      
        1 actttgagta gtcgctggaa taccaatact cagttccaaa tcgcaaggcg ctgagaccct
       61 tcagcttgta ttccagcaca gccttggttt gaaagagatt ggccttggtt ttcagatcat
      121 aattcctggc tgccacatag agaggcagtt gccctgtaac aggattattc tcctcgtcct
      181 gtacttcgct gttgatgttt tgtgtatcgc ggctccagct gaagccggca ttcagtttcc
      241 accggtttga caatcgctca cgataactga gattggtgta aatattgtca ttgaccaatt
      301 gaaatgcatt tttcaaatca ggcaaatcga tatcaggatt tcgcagtccc aagcggttac
      361 tggcatagct gccgtagaat ttgagcatgc cggttttgga tgttttgatg cggaaattgg
      421 catcgccgtt ccacacttcc ggcgcatgaa agtagtccgg tcgttgcggt accattttga
      481 aatacaaccc tacgttggtg tacccggcgc tggcacccca gctgttggtt ttggcgctgt
      541 caaggtgctg gtattgtgcc cccaaaaaca gcggcgatac tgaggcgctg gcagatgtac
      601 gttccggcaa gtcaatcgac tccaggatca acgctgacga caaggcctgg ccatacaaag
      661 cggaatagcc gccggtgctg aacactgttc ctttgaacaa aaagggcgaa aaccggcccc
      721 ggctggcaat attgggcgcc tgcccgaaga aaggattggc caccgtggtg ccatctatga
      781 attggcgggt ttcataaccc tcaccgccac gcacaaaaag ttcggcactc tcacccacct
      841 gctgtgtacc aggcagggtt ttcatggccg cagtcacatc ggcattggca cttgccgtgg
      901 tcacgatgtc caatggcttc aaaaccgttg ttttcttctg atccccggct tcaaaactcc
      961 cggcggtaat tactactgct gtcaattcgt tgggctcctc ccggaggctt atttccagcg
     1021 aaatgggagc accggccagt tttaccttct gctcccattt cttgtagccc atactggaaa
     1081 tgaccagtgt ttgtgtgtcc ctttcgctgc tggtgaaggc aaaaacaccc aggctgtcgg
     1141 tggtagtgcc atcatagctg ccttcaatgg aaacgctggc acccaccagt gggcgcttgc
     1201 gttggtcggt tacctttcct tttaaagaag tgtgctgacc gtatagtgtg atgcttgtaa
     1261 acaagctgag tacgaaaaga ggaaaagcat tcatggtgtg ctgattggaa gtcaaaacta
     1321 atttagttta caatgcaaac caaattatac tataaatatt tttatgaacg tcggatttat
     1381 tggacaagtg gattgaagga aaagcggaac gaatgcctta acttgaattt caccttaaaa
     1441 gaaaagcagt atgaaagtgg cagatatttt gcgccgaaag ggagccaatg tggtattcat
     1501 cacgcctggt gcttctgtaa tagatgcttt gcacattatg gaggagaaga atattggaag
     1561 cgtggtagtg atggaaaaca gccaatacaa aggcattgtg acagaacgcg actattcccg
     1621 gaaagtgatc ctcaaaggca aaaactcaag cgataccccg gtttcagaaa taatgaccac
     1681 tgacctgcct gcggtttcgc ccgatgacag tattgataag tgcatggaac tgatgagcaa
     1741 caagcatatt cgttatttgc ctgtttttga tgctggcggg cagttggcag gaatcatctc
     1801 catgtcggat gtggtgggtg ccaagctcat caggcagcag gaaaccattt ctcaccttta
     1861 aaaatacatt tcaggcagtt aacaaaaatc ccggccattg ggccgggatt ttttctttta
     1921 cctgattcgg taagtataat cattggagac aaaatctctc cgaacgtctt taagcatccg
//
LOCUS       DATIQF010000342         3252 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_218393,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000342 DATIQF010000000
VERSION     DATIQF010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3252
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218393"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..650)
                     /locus_tag="VLL95_05720"
     CDS             complement(<1..650)
                     /locus_tag="VLL95_05720"
                     /inference="COORDINATES: protein motif:HMM:NF014605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HSR38393.1"
                     /translation="MTETIINLETVNPIEFFGVNNGKLDLLKKKFPLLKILGRGTQIK
                     LSGSPEHIEFAKEKIGLIVQYLERNGHLSENYFEQILGGDDAETIDNFVERNPNDVLV
                     FGPNGKTVRARTHNQKRMVSAADANDIVFAMGPAGTGKTYTAVALSVRALKNKSVKKI
                     ILTRPAVEAGESLGFLPGDLKEKIDPYLRPLYDALDDMIPADKLGYYMSTRTIEIAP"
     gene            960..1736
                     /locus_tag="VLL95_05725"
     CDS             960..1736
                     /locus_tag="VLL95_05725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38394.1"
                     /translation="MKRLYLLSAFFAVSATFQYLNGQMAVVDYMRVPPGKEAGYIKIE
                     KAWKAIHEVRKKAGKILSWNLYQVSFAGADAPYQYVTVTTYPRLAKYIEMDWNDFQGA
                     MAGLDEEGMNQFFNKTNDARVLTKTSVYNRVVGVQKPASTPSGILVVNFMHIKPGGDD
                     TYLQAEKTVFRPVHEEDIRLQHRQNWSLWHLENGDLTGHQYVTIDAYSSLAQMDSDRD
                     QDAMLKKVHNGKDVSDLIRRSLLTREMRERQIWKWIDGVN"
     gene            2011..>3252
                     /locus_tag="VLL95_05730"
     CDS             2011..>3252
                     /locus_tag="VLL95_05730"
                     /inference="COORDINATES: protein motif:HMM:NF013491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP/pyruvate-binding domain-containing protein"
                     /protein_id="HSR38395.1"
                     /translation="MATIKKPTKYVYFFGGGKADGNESMKNLLGGKGANLAEMAGHPQ
                     LRLPVPPGFTVTTEVCTYYYANKRTYPKVLTQQVKEALTKMEKLTGKKFGDVKNPLLV
                     SVRSGARKSMPGMMETVLNVGLNENTIQGVIAQSGDERFAYDAYRRLIMMYADVVMEK
                     AAGLEPKGGKGIRKLLDEKLEAIKHKQGYKSDTELTVPELKALVADYKKTVKKVLGVE
                     FPDDPMAQLWGGMGAVFASWNGKRAIEYRRIEKIPHEWGTAVNVQAMVFGNMGNDSCT
                     GVAFTRNPGNGENHFYGEYLVNAQGEDVVAGIRTPAPINNYSKNAQSEHFDTLEKIMP
                     GLYKELFAIQKKLERHYKDMQDIEFTIEKGKLYMLQCRVGKRNGVAAVRMATDMYKEK
                     LIDIKTAVMRVAPNQLVELLLP"
BASE COUNT          898 a          695 c          805 g          854 t
ORIGIN      
        1 ggcgcaattt cgatggtgcg ggtgctcatg tagtaaccca gtttatcagc cgggatcatg
       61 tcgtccagcg catcgtacaa cggccgcagg tagggatcaa ttttttcctt gagatcgccg
      121 ggcaaaaatc cgagactttc gcctgcttct actgccgggc gggtaaggat gatctttttt
      181 actgatttgt ttttgagggc tcttactgac agtgcaacgg cggtgtaggt tttaccggta
      241 ccggccggtc ccatggcaaa aacgatatca ttggcatcgg ctgccgacac cattcgtttc
      301 tggttgtggg tacgggctct tactgttttt ccattggggc caaaaaccaa cacatcattg
      361 ggattgcgtt ccacaaagtt gtcgatggtt tccgcatcat ctccgcctaa aatttgttcg
      421 aaatagttct cgctcaggtg gccgttgcgt tcgaggtact gaacgatgag gccaattttt
      481 tcttttgcaa actcgatatg ttccgggctg ccgctcagtt tgatttgtgt cccgcggcca
      541 aggatcttta acaatgggaa tttctttttc agtaaatcga gttttccgtt gtttaccccg
      601 aagaattcaa tgggatttac tgtttcgagg ttgatgatgg tctctgtcaa atggcgtaag
      661 ttttttgggt tacactaaag aaagggaaag aacttttgct cgaatcgagt gtatccaaat
      721 ctatcattta gtaaaactgt tactcaaatt tacttattca ctttttgtgg aaagaaatct
      781 gggcaggtgt ccggcttatt gttttgtgaa tattcgagct gttcaggagg tcttctcaat
      841 ggcgttacaa gcgggttgaa acattgttaa atgcagccac atgaggaaaa aatatcatgt
      901 aaaatgctat gatagccctg acaataattg taacttaatt ggacctaaac cgcttgaaca
      961 tgaaacgcct ttacctgcta tcggcattct ttgccgtatc tgccacattt cagtatttaa
     1021 acggtcaaat ggccgttgtt gattatatgc gtgtaccgcc tggaaaggag gcaggttata
     1081 ttaagatcga aaaagcctgg aaggcaatcc atgaggttcg aaaaaaggca gggaagattc
     1141 tgagttggaa cctctaccaa gtgtcttttg caggggctga cgcaccctac cagtatgtta
     1201 ccgttactac ctacccacgg ttggccaagt atatcgaaat ggactggaat gatttccaag
     1261 gggccatggc tggtcttgac gaagaaggaa tgaaccagtt tttcaacaaa acaaatgatg
     1321 cccgggtact gacaaagaca agcgtgtaca atagggtggt tggagtacaa aaacctgcca
     1381 gtacgccatc aggtattctg gtagtcaatt ttatgcatat caaacctggg ggagatgata
     1441 cctatttgca agctgaaaaa actgtttttc gaccagtgca tgaagaagac atcaggctac
     1501 agcatcgtca aaattggagt ctctggcacc ttgagaatgg tgacctgacc ggccatcaat
     1561 atgttaccat agatgcctat tcttcattgg cccaaatgga cagcgatcgc gaccaggacg
     1621 ccatgttgaa aaaggtacat aacggcaagg acgttagcga tttgattcgc cgcagcctgc
     1681 tgacccggga aatgcgggaa cggcagatat ggaaatggat cgatggagtt aattagatca
     1741 atgccatcat ttaatagaag aatcccccga aatgccgggg gattcttctt taataccatg
     1801 ctcgccattg tacgattatc aggaatacat ggtgacctca attggcattt tcctgacgat
     1861 tgttagtttt tggcttgtta ttcgtcattt ttcagccttt tggctccttc tacttttact
     1921 tccgatcaat caaacattag aagcaattga tgtaccacag ataatgtact cccaattact
     1981 tcccatccag aaattcaaaa accaatacaa atggcaacga tcaagaaacc caccaagtac
     2041 gtatactttt tcggtggagg caaggctgac ggtaacgaat ccatgaagaa ccttttaggt
     2101 ggcaagggcg ccaacctggc tgaaatggcc gggcatccgc aattgcgtct tccggttcct
     2161 cccggtttta ccgttaccac tgaagtgtgt acttactact atgccaataa gcgtacatat
     2221 cccaaggtac tgacccagca ggtgaaagaa gcgctgacca aaatggaaaa gctgaccgga
     2281 aagaaattcg gtgacgtaaa aaatccattg ttggtttccg tgcgttcagg tgcccgcaag
     2341 agcatgccgg gtatgatgga aaccgtactc aacgtaggcc ttaatgaaaa caccatccag
     2401 ggcgttatag cccaaagcgg tgatgaacgt tttgcatacg atgcgtatcg ccggctcatt
     2461 atgatgtatg ccgatgtggt gatggaaaaa gccgcaggcc ttgaacccaa aggaggtaaa
     2521 ggcatccgca aacttctcga tgaaaaactg gaggccatca aacacaagca aggatacaaa
     2581 agcgatactg aactgacagt acctgaactg aaggcattgg tggctgatta caagaagacc
     2641 gtaaagaaag tattgggtgt tgagtttccc gatgatccta tggcccaact gtggggtggc
     2701 atgggcgctg tatttgccag ttggaatggc aagcgggcca ttgaatatcg ccgcattgaa
     2761 aaaataccgc atgaatgggg tactgccgtc aatgtgcagg cgatggtatt tggtaacatg
     2821 ggcaatgaca gttgcaccgg tgttgccttt acccgcaacc ctggtaatgg ggagaatcat
     2881 ttttacggtg agtacctggt aaatgcccag ggcgaagatg tggttgctgg tatacgtaca
     2941 ccggcgccca tcaacaacta ctcgaagaat gcgcaaagcg aacactttga cacgctggaa
     3001 aaaataatgc cgggtttgta taaagaacta ttcgctatcc agaaaaaact ggaaaggcac
     3061 tacaaggaca tgcaggatat agagttcacc attgaaaaag gtaagcttta tatgctgcaa
     3121 tgccgggtag gcaagcgcaa tggtgtggct gctgtgcgca tggccactga tatgtacaaa
     3181 gagaaactga ttgacatcaa aactgcggtg atgcgggtgg ctcccaacca gttggtagag
     3241 ttgctgcttc cc
//
LOCUS       DATIQF010000343         2777 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_142533,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000343 DATIQF010000000
VERSION     DATIQF010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2777
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142533"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..721)
                     /locus_tag="VLL95_05735"
     CDS             complement(158..721)
                     /locus_tag="VLL95_05735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38396.1"
                     /translation="MINSSISFKIDKQRPTNERQWAILIQHATNNKWQDVKALCIFLS
                     AVSGLYLLFILFTSDKNYISFKVVSLAMIILAWCYLGFKAFVFFHGKRDNERRLQHFL
                     NEITDEQLRYSVLIDDIYVNIITHENSLQMQWSEFTDYGIHNETIYVFNRVTPIHTLY
                     WDRSEMGDFEFDTLLKLLRQKSLKRRF"
     gene            complement(758..1057)
                     /locus_tag="VLL95_05740"
     CDS             complement(758..1057)
                     /locus_tag="VLL95_05740"
                     /inference="COORDINATES: protein motif:HMM:NF016876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_process: GO:0030541 - plasmid partitioning [Evidence
                     IEA];
                     GO_process: GO:0051290 - protein heterotetramerization
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HSR38397.1"
                     /translation="MANYILTNKAVADLSAIWNYTCDTWSEQQAEKYYYLLLDSCEDL
                     ANGKVAGKLYPEIGEQVFGFRISRHIIFYRHAGPQKIEVARILHSSMDLKNRMQE"
     gene            complement(1050..1301)
                     /locus_tag="VLL95_05745"
     CDS             complement(1050..1301)
                     /locus_tag="VLL95_05745"
                     /inference="COORDINATES: protein motif:HMM:NF015640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0051983 - regulation of chromosome
                     segregation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HSR38398.1"
                     /translation="MARNTSISLGDHFENFVDNSISTGRFKNASEVIRAGLRLLEEEE
                     NKAMALRTAIEEGLASGVAKNFDPKKHLEKLKAARRKHG"
     gene            1605..1979
                     /locus_tag="VLL95_05750"
     CDS             1605..1979
                     /locus_tag="VLL95_05750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38399.1"
                     /translation="MSHIDLSNEMNLRVEARLIAKGSDTPLHGAGYTVRLFDRDFLDD
                     AYLGESVPDENGKVAFHFPASAIAKTVLDDAMPDFFFVVYKNDEVIFRSQVMENVNLQ
                     ALEQYRHGVGEIIDLGTFLVEG"
     gene            1998..>2777
                     /locus_tag="VLL95_05755"
     CDS             1998..>2777
                     /locus_tag="VLL95_05755"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HSR38400.1"
                     /translation="MQSSALRSFFSSTTWSGVPVPDRRLFIALMVFHFLLSGWFITRT
                     DFTADESDYYGYAIRWAHGDTKRLRPIDDSKSPIVALTLIPNIIKPWVDLSNDPYGFK
                     MLQMGRWFMYVFQWLGAFVLFLWMFRLWGPKHWVLPLVLYLFDPMVFSFGMILGTDMV
                     CASLVLATCYSLWRYTQTGVTRYWIISSIFCALSLVAKASMIYLPVLMLVLLLLQRFT
                     GSTSPMKKLNAGVWVRNIFLLVLLCWIMISAAYQFDHMLFPI"
BASE COUNT          645 a          629 c          680 g          823 t
ORIGIN      
        1 atgcatcttc aaccaggtac tcactttgct gcccggtgcc aagcttacgg tatcgcctgg
       61 cagtaagatg cggttgcagc agaatttgca agtgcagtag gcgttttacc acagaggcga
      121 aggagggggc gcacagaggg cacggagatt ttttgtatca gaatctgcgc ttcaaggatt
      181 tttgtcgcaa cagtttaagg agagtatcaa attcaaaatc tcccatttca ctccgatccc
      241 aatacaaggt gtggattggt gtcacacgat tgaaaacgta aattgtttca ttgtggatgc
      301 cataatcggt aaactcactc cactgcattt gcaaggaatt ttcatgggtg ataatattta
      361 cataaatgtc atctatcaaa actgagtatc gaagttgttc atcggttatt tcgttgagaa
      421 aatgctggag acgtctttca ttatctcgct ttccatgaaa gaagacgaac gccttgaatc
      481 caaggtaaca ccaggccaat attatcatgg ccaaactcac tactttaaac gaaatgtaat
      541 ttttatcgga agtgaataaa ataaacaaca ggtaaaggcc ggaaactgcc gataaaaaaa
      601 tacataaagc ctttacatct tgccatttat tgtttgtggc atgttgaatt agtatcgccc
      661 attgcctttc attagtcggc ctttgtttat caatcttgaa agaaatcgag ctattaatca
      721 ttctgactgt tgaaatggta agacaatgaa ttcagattta ttcctgcatc ctgtttttca
      781 aatccatgct gctgtgaagt atacgagcga cttcaatttt ttgcgggcct gcatgacgat
      841 aaaaaatgat gtgcctgctg atccggaaac caaagacctg ctcgccgatt tcggggtaga
      901 gtttgccggc cacttttcca ttggccaaat cctcgcagct atccagcagc aggtagtaat
      961 acttttcggc ctgctgttca gaccaggtat cacaagtgta attccaaatg gctgacaaat
     1021 cggctacggc cttattggta aggatgtaat tagccatgct ttctccgggc ggctttcagt
     1081 ttttcaaggt gctttttggg gtcgaaattt ttggcgacac cactggccaa cccttcttca
     1141 atggcagtgc gcagcgccat ggctttgttt tcttcttctt ccagtaaacg caggccggca
     1201 cggatcactt cgctggcatt tttaaaccgg ccggtggata tgctgttgtc aacaaagttt
     1261 tcaaaatgat cgccgaggga aatggaagta ttgcgggcca tacattgcta tttggcggaa
     1321 agttaccaat aattggtaat tagagattgt ttaaaccaca gagagcacgg agatcttggg
     1381 ggcagcgttg atggttgatg gttgttagtt gttggaaagg aaacgttctt ctactgtcac
     1441 gtaaaccttt ctctattctc ctgctgtttc ctccttgcag gttctcagtt gttagtattc
     1501 actttgtagc agatcggttt ttggctcctc gccctttagt gagaggcggg ggtgagggtc
     1561 accaacatgc agtaccttta ttaccacaac aaaacctcaa tcctatgtca catattgatc
     1621 tttccaacga aatgaacctg cgggtggaag cccggctgat tgccaagggc agtgacacgc
     1681 cgctgcatgg cgccggctat acggtgcggt tgtttgaccg tgatttcctt gatgatgctt
     1741 acctcggcga atcggtgccc gatgaaaatg gaaaagtggc ttttcatttc ccggcatcgg
     1801 ccattgccaa aaccgttctc gatgatgcca tgcccgattt ctttttcgtg gtgtacaaaa
     1861 acgatgaagt gatctttcgc agccaggtga tggaaaacgt gaacctgcag gcgctggaac
     1921 aataccggca cggggtgggg gaaattatcg acctcggaac cttcctcgta gagggttgat
     1981 gcgccatatt tgcagctatg caatcatcgg ccctgcgctc ttttttttca tccactacgt
     2041 ggagcggtgt tcctgtgcct gaccggcgat tgttcatcgc tttgatggtt tttcatttcc
     2101 tgttgtcggg ttggttcatt acccgcaccg attttactgc cgacgaatcg gattactatg
     2161 gctatgccat ccgctgggcg catggcgata ccaaacgcct gcgtcccatt gatgattcga
     2221 aatctcccat cgtagcgctg acgcttattc ctaacatcat caagccgtgg gtggatctga
     2281 gcaacgatcc gtacgggttc aaaatgctgc agatggggcg ctggttcatg tatgtatttc
     2341 agtggctggg ggcttttgta ctttttcttt ggatgttccg cttgtggggg ccaaagcatt
     2401 gggtgctgcc actggtgctt tacctgtttg atcctatggt tttcagcttt ggcatgatcc
     2461 tgggcaccga tatggtatgc gcttcgctgg tgctggccac ctgctacagt ttgtggcgct
     2521 atacccaaac gggggtgacg cgttactgga tcatcagcag cattttttgc gccctgtccc
     2581 tggtggccaa agcttccatg atctacctgc cagtgctgat gctggttctt ttgttgctgc
     2641 agcgtttcac cggtagcacg tctccgatga aaaaactgaa tgccggggta tgggtccgta
     2701 atatcttttt gctggtgctg ctgtgctgga tcatgatcag cgccgcgtac cagtttgatc
     2761 acatgttatt tcccatt
//
LOCUS       DATIQF010000344         3127 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_5552, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000344 DATIQF010000000
VERSION     DATIQF010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3127
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5552"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..770)
                     /locus_tag="VLL95_05760"
     CDS             complement(<1..770)
                     /locus_tag="VLL95_05760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38401.1"
                     /translation="MSDQKLPRLLAAAKEFNIGQDTLVEFLAGKGFPKDDLKPTAKLT
                     PEMYLALQKEFQSDKVAKAKSDMIDLPKGASPEAKKKKEDEEIHFKKEEKKGPEKEVI
                     SEVSAHEPAVVAVEPPKEEVKPAAPVEEEVAHPHVEKVEEASQPEQAETTVRLDAPEI
                     DMPKVVGVIDLSAIDSSTRPKKGAKKPAPAAKKETEEQAPEPVAAVPSEPAQPAEPAV
                     AAEAEQENGTEEKVIENIQTQRLSGPKIIGKIELPVER"
     gene            complement(874..2121)
                     /gene="nusA"
                     /locus_tag="VLL95_05765"
     CDS             complement(874..2121)
                     /gene="nusA"
                     /locus_tag="VLL95_05765"
                     /inference="COORDINATES: protein motif:HMM:TIGR01953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HSR38402.1"
                     /translation="MASINLIEAFQEFKEAENIDRPTLMKVVEDVFKTLLRKKYGSDE
                     NFDVIVNAEKGDLEILRHRMIVPDGEVQDPLAEIGYTDAVKIEPDFEVGEELFEEIDL
                     YDFGRRAILAAKQTLASRISDLKKNVLVKKYADRVGELVSAEVYQAWKKEALLMDEEG
                     NELVLPRSEQIPQDFMKKGEPVRAVVKKVELKNNSPVIILSRTHPSFLAQLLEIEVPE
                     IADGLINIKKIVREPGERAKVAVESLDDRIDPVGACVGMKGSRIHGIVRELKNENIDV
                     INWTNNINLLVQRALTPAKISSMRIDLDRKHADVFLPADQVSLAIGKRGVNIKLACEL
                     TGLDIDVFRDTEGEEVEFDIDLDEFSDEIDMWVIDEFKRIGCDTARSVLQLSPEELER
                     RTDLEKETIADVLRVLNEEFEKE"
     gene            complement(2176..2646)
                     /gene="rimP"
                     /locus_tag="VLL95_05770"
     CDS             complement(2176..2646)
                     /gene="rimP"
                     /locus_tag="VLL95_05770"
                     /inference="COORDINATES: protein motif:HMM:NF002531.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042274 - ribosomal small subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly cofactor RimP"
                     /protein_id="HSR38403.1"
                     /translation="MDTSAQIAAITGMINNLLADQPSVFLVQVKIKPTNNVKVFVDGD
                     NGITIENCIKLNRKLYAQLEEAGMYPDGDFSLEVSSPGVGEPLLLHRQYSKNIGRLLE
                     VKTVEGAVHTGKLISAEESAIALEVTSGKGKKAVTQTLSIPFENIKEASVQIQF"
     gene            2845..3093
                     /locus_tag="VLL95_05775"
     CDS             2845..3093
                     /locus_tag="VLL95_05775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38404.1"
                     /translation="MGYLLAAFLIYLAFRFITGFLIPVVRTTSTVRKQFHAMKSQMEQ
                     AQQQYQQQQNGQHDNNAKPGTKGKYDIEGEYIPFEEVK"
BASE COUNT          658 a          833 c          718 g          918 t
ORIGIN      
        1 tccctttcta ccggcaattc aattttgcca atgatcttag gaccgctcag gcgttgcgtc
       61 tggatattct caatcacttt ctcttctgta ccattttcct gctcggcctc ggcagctact
      121 gcgggctcgg caggctgggc aggttcggaa ggcacggctg ccactggttc cggtgcttgc
      181 tcttccgttt cttttttagc cgctggcgct ggtttcttgg cacctttttt cggtcgggtg
      241 ctggagtcaa tggcgctcag gtctattacg cctaccactt tgggcatgtc aatctccggc
      301 gcatccaacc gtaccgttgt ttcggcctgc tccggttggc tggcctcttc caccttctcc
      361 acatgcgggt gggcaacttc ttcttcaaca ggagcggcag gttttacttc ctctttcggg
      421 ggttcaaccg caacgactgc aggctcatgc gcacttactt cactgatcac ttccttctca
      481 ggcccttttt tctcctcttt cttgaagtgg atttcctcgt cttccttctt cttctttgcc
      541 tcggggctgg cgcctttggg caaatcaatc atatcgcttt tggccttggc caccttatcg
      601 ctctggaact ccttctggag agccaggtac atttctggcg taagcttggc agttggcttc
      661 aaatcatctt tcggaaatcc cttacccgcc aggaattcca cgagggtatc ctgaccaata
      721 ttaaattctt tggccgccgc taataatctt ggaagttttt gatctgacat tctgcttttt
      781 taaatactgc ctgccgactt gcttttttgt gcctgacaga aagttgaaat gctactatta
      841 atgttcaaat gtacagtggg taacccggat gcactattcc ttttcaaatt cttcattcaa
      901 aacacgcaat acatctgcaa tggtttcttt ttccaggtcg gtacgacgct ccagttcttc
      961 ggggctcaat tgcaacacag accgggcagt atcgcaacca atgcgcttga attcgtcgat
     1021 cacccacatg tcgatttcat cagagaattc atctaggtcg atgtcgaatt ccacttcttc
     1081 tccttcggta tcgcggaaca cgtcaatatc gagcccggtg agttcgcaag ccagtttgat
     1141 gtttacaccg cgtttgccaa tggccaggct cacctggtcg gccggcagaa atacgtcggc
     1201 gtgcttgcga tccaggtcga tgcgcatgct ggagatcttg gcaggcgtaa gagcacgctg
     1261 caccaacagg ttgatgttgt tggtccagtt gatcacatcg atgttctcat ttttcaattc
     1321 gcgaacgatg ccatgaatgc ggctgccctt catgcccacg caggcgccta cgggatcgat
     1381 gcggtcatcg aggctttcta cggccacttt cgctctttcg ccgggttcac gtacaatctt
     1441 cttgatattg ataagaccgt cagcaatttc aggcacttca atttccagca gctgggccag
     1501 gaaagaagga tgggtgcggc tgaggatgat gaccggtgaa ttgttcttga gttctacttt
     1561 cttcaccacg gcacgaaccg gctcaccctt cttcatgaag tcctggggaa tttgttcgct
     1621 gcggggcaac acgagttcat tgccttcttc gtccatcagc aacgcttctt tcttccaggc
     1681 ctggtacact tcggctgaaa ccagttcgcc cacacggtct gcatatttct tcaccagtac
     1741 gtttttcttc aggtcgctga tgcggctggc cagggtttgc ttggcagcga ggatggcacg
     1801 acgaccgaaa tcgtacaggt caatttcttc aaacaattct tcgcccactt cgaagtcggg
     1861 ttcaattttc accgcatcgg tgtacccaat ttccgccagc gggtcctgca cttcgccatc
     1921 aggcacaatc attcggtgac gcagaatttc gaggtcaccc ttctcggcgt ttacaatcac
     1981 atcgaagttt tcatcgctgc catatttctt gcgcagcaag gttttgaaaa catcctcaac
     2041 cactttcatc aatgtgggac ggtcaatgtt ttccgcttcc ttaaactcct ggaacgcttc
     2101 aatcaggtta atgcttgcca ttttgatgtg ctcttttgcg gtcccttacc aacgtttttt
     2161 caggaccgat gatgattaaa attgaatttg aacgcttgct tcttttatgt tttcaaatgg
     2221 aatggaaagc gtttgggtaa cagctttctt tccttttcca ctggtcactt ccagggcaat
     2281 ggcgctttct tcagccgaaa tcaacttgcc ggtgtgcacc gctccttcta ccgttttcac
     2341 ttccagcaac ctgccaatat tcttgctgta ttggcggtgc agcagcaggg gttcgcccac
     2401 accgggactg cttacttcaa gcgaaaaatc gccatcggga tacatgccgg cttcttccag
     2461 ctgggcatac aacttgcggt tcagtttgat gcagttttca atggtaatgc cattgtcgcc
     2521 gtctacaaac acctttacat tgttggtggg tttgatcttc acctgcacca aaaacactga
     2581 aggctggtcg gccagcaggt tgtttatcat gcccgtaatg gcagctattt gagcgctagt
     2641 atccataagt tcaccttgaa agaaagcaaa agggaacgga gtccgttccc tttctttcgc
     2701 ttcatattcc ggggcaaatg taggggtaat atggccaaca atccaaattc agttgggggc
     2761 cctttttgcc aaccttttgt gccacctgct gtttaacaat tttaacacag ccccctcagg
     2821 ctgcatttta cctttgaaac tcgtatgggt tatttattag cagcgtttct tatttacctg
     2881 gctttcaggt ttattaccgg cttcctgata ccggtggtac gcactacttc tactgtgcgc
     2941 aagcagttcc atgccatgaa aagccagatg gagcaggccc agcagcagta tcagcagcaa
     3001 caaaatggcc agcacgacaa caatgccaaa cccggcacca agggcaagta cgacatagag
     3061 ggtgaataca ttccgtttga ggaagtgaaa taataagtac gaggtacgaa gtgggaagta
     3121 cgaagta
//
LOCUS       DATIQF010000345         2195 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_51255, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000345 DATIQF010000000
VERSION     DATIQF010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51255"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..641)
                     /locus_tag="VLL95_05780"
     CDS             complement(<1..641)
                     /locus_tag="VLL95_05780"
                     /inference="COORDINATES: protein motif:HMM:NF016668.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChbG/HpnK family deacetylase"
                     /protein_id="HSR38405.1"
                     /translation="MKKTVFTFLIALACFRVTAQPDPGAIPVLIRCDDIGMCQSVNAA
                     ARQVLETGMPVSMSVMVNCPWFSDAVALLNKYYNVSVGIHLTLNSEWKQYKWGPVAGA
                     SAVPTLVDSLGYFFPSRSLLYANQPKLEEIELELRLQIVKALKAGLDVDYLDYHMGTA
                     VQTPETRAIVEKLAKEFGLAISRYFDEVDVPGGYIAPITSKLDTLTALMKNLKP"
     gene            955..1725
                     /locus_tag="VLL95_05785"
     CDS             955..1725
                     /locus_tag="VLL95_05785"
                     /inference="COORDINATES: protein motif:HMM:NF012925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 16 glycosylhydrolase"
                     /protein_id="HSR38406.1"
                     /translation="MGANWVLQGTFSDEFNGKGLDTTKFWDFNPTFHGRKPAYFSREN
                     VKVRNGNLELWAKQQKPNEVTVENRVRGFDKYTTATIKSKQRIRYGYFETRAKAMKAS
                     VSGAFWLYDPLDGPAKYTAGDFSEEIDIFEIFGKPTKKENDSIFYATVHRMETPYVEA
                     TVRSKQTPMPNKSFKMKVGFDFSEDFHVYGLLWTPNELVWYIDGKEVFRRENDYFKRP
                     LHLMLDCEIMEAWVGLPDAKDLPGKFEVDYVRVWQMKE"
     gene            1917..>2195
                     /gene="tnpA"
                     /locus_tag="VLL95_05790"
     CDS             1917..>2195
                     /gene="tnpA"
                     /locus_tag="VLL95_05790"
                     /inference="COORDINATES: protein motif:HMM:NF033573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HSR38407.1"
                     /translation="MPHSFTKIWIHAIWSTKEREPLIDQSVEQDIFNFISEQLKEQGC
                     PVRIINGMPDHIHCLFLLSAQESISNVIKQVKGSSSHFINQSNLVPEKF"
BASE COUNT          591 a          482 c          530 g          592 t
ORIGIN      
        1 ggtttgaggt ttttcatcag ggctgtcagc gtatccaact tggatgtaat gggagcgatg
       61 tagcctccgg gcacatccac ttcatcgaag tagcgggaaa tggcaaggcc aaattctttc
      121 gccagctttt caacgatggc cctggtttcg ggtgtttgta cagcggtgcc catgtggtag
      181 tcgaggtaat caacgtcaag cccggctttc aatgctttta caatttgcaa tcgcaattcc
      241 aattctattt cttccagctt gggttggttg gcatacagca ggctgcgtga ggggaaaaaa
      301 taccctaatg aatcaaccaa tgtaggtact gctgaggcgc cagccaccgg tccccatttg
      361 tattgcttcc attcagaatt taaggtgagg tgaatgccaa ctgacacatt gtaatacttg
      421 ttcaacaatg caactgcatc gctgaaccag ggacagttta ccatcacact catggaaaca
      481 ggcatgcctg tttccagtac ctggcgggcg gcggcgttca cactctggca catgccaata
      541 tcatcgcagc ggatgagcac aggaatggct cctggatctg gttgagcggt tactcgaaaa
      601 caggccaacg ctatcaggaa agtgaatact gtctttttca tggttgtggc atttcaggca
      661 aaaggtaagc cagttgcggg attctgttga tgatgaaagg cggggtgcct ttatttatgg
      721 tgccacgcag tacatgcaca ctggcaactt tatcatttct cgtcttataa atcaggccac
      781 cttcatgcgg cgcatcgtgc accaatcaat tgtttggtgg tagccagtaa agcatttccc
      841 atgaataatc aaactgtatt ccgctcctgt ttttcgcctg ttcttctgtt cggcattttg
      901 ttactgtgtt ccccagcagg aagtgcccag ctcaacaatt cacccgtttg tcctttggga
      961 gcaaactggg tattgcaggg tactttcagt gatgaattca acgggaaagg ccttgacacc
     1021 accaaatttt gggatttcaa tcccacattc catggtcgca agcctgcgta tttcagcaga
     1081 gagaatgtaa aggtgcgcaa cggcaacctt gaactgtggg cgaagcagca aaagccaaat
     1141 gaagtgacgg tggaaaaccg ggtgcgtggc tttgacaaat acaccacggc taccatcaaa
     1201 agcaaacagc gcatccgcta tggctatttt gaaaccaggg ccaaagcaat gaaggccagc
     1261 gtgtcaggcg ctttctggtt gtacgatccg ctagatggtc ctgccaaata caccgccggc
     1321 gacttttctg aggagatcga catcttcgaa atttttggca agcccaccaa aaaggaaaat
     1381 gacagtattt tttatgctac cgtacaccgc atggaaacgc cttacgtgga agccaccgtt
     1441 cgatcaaagc aaacccccat gcccaacaag agttttaaaa tgaaagtggg ttttgatttt
     1501 agcgaagact ttcatgtgta cggtttgttg tggactccca atgaactggt gtggtatatt
     1561 gatggcaagg aagtgtttcg ccgggagaat gattatttca aaaggccctt gcacctgatg
     1621 cttgattgtg agatcatgga agcatgggta ggcctgcccg atgcaaaaga tctgccggga
     1681 aaatttgaag tggattatgt gcgggtttgg cagatgaagg agtgaggtat gtgggatttt
     1741 tcctttcgat gaagaagtaa ggcaattgcc ataaaaaaat ggatgaatcc atttaattta
     1801 aagtttgtgt ttacccatag cccacggttt aaaccgtggg ctatggtaac gcaaatcgtt
     1861 attaacgcaa accgttttaa cggttttgaa attgccaaat cataaaagcc tgaattatgc
     1921 cacactcttt cactaaaatc tggattcatg ccatctggtc tacaaaagaa agagaaccgt
     1981 tgattgatca atctgtggag caggatattt ttaatttcat ttcagagcaa cttaaggaac
     2041 agggatgccc ggttcgcatt attaacggaa tgcccgacca tattcattgc ttattcctgc
     2101 tcagtgcgca ggaatcaatt tctaatgtca tcaagcaggt caaaggcagt agttcccatt
     2161 ttatcaatca aagcaacctg gtacctgaaa agttt
//
LOCUS       DATIQF010000346         1655 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_51260, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000346 DATIQF010000000
VERSION     DATIQF010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1655
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51260"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1655
                     /locus_tag="VLL95_05795"
     CDS             <1..>1655
                     /locus_tag="VLL95_05795"
                     /inference="COORDINATES: protein motif:HMM:NF013117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HSR38408.1"
                     /translation="VKDNIYSIDQSIKQIRKNYFKSDEPPLWRLSPSRHSTLDVLNIS
                     AHKGKLVLQYYFSSTANVTYTAILLFLALFLALSLMIRKLKALNKEFVLHQLAPHLSR
                     SVFFSSLFLAVTVAQLFYANIPMVFLQIAWILMVGSALVLFKKELQGRSKGLYIGFVI
                     LFLWACFENLLLEATFAERIIMLMASTGGLFLAVRLLRYYKELDEKPAYYKFFIYLFI
                     VQEAVAVVANIAGSYTFGRAMAVGGFFNLMLGFLVFQAIVVFKEILVVSYEYYQRNNV
                     LGSMLNLLEMKRSAERILPVIAWIGWFIIFAKNLNFYDVLLGSSVEFLEAPRKLGNVE
                     FTFSSVAIFFVTIWISTLLARVVAFLLGGGSLQVGSIKKTRFGSSILVLKLVIISLGL
                     LVAFAASGIPMDKITIIIGALGVGIGFGLQTIVNNLVSGIILAFEKPIEIGDQIEVGG
                     RLGKVKEIGIRSSKLATFEGAEVIIPNGDLLSQHVVNWTLSHNHRRVEIIVGVSYGSQ
                     LAQAKEVLEKILLENEHVDKSPAPAVLVHQFNTSSIDFRLLFW"
BASE COUNT          408 a          356 c          403 g          488 t
ORIGIN      
        1 aagtaaaaga caacatttac agcattgatc aaagcattaa acaaatcagg aagaactatt
       61 tcaaaagtga tgagccacct ctttggcgac tttcgccctc acgacactca acattggatg
      121 tactgaatat cagtgcccat aaagggaagt tggtattgca gtattatttc tccagcacag
      181 ccaatgttac ctatacagca atattgctgt tcctggcatt attcctggcg ctttccttaa
      241 tgatccgcaa actcaaagcg ttgaataagg agtttgtgct ccaccaattg gctccgcacc
      301 ttagcagatc tgtattcttc tcctccctgt ttctggcagt aacggtagcc cagttgtttt
      361 atgccaacat tcctatggtt ttcctgcaaa tagcatggat cctgatggtg ggatccgcac
      421 tggttttgtt caaaaaggaa ttgcagggaa gatcgaaagg cctgtatata ggcttcgtta
      481 ttttattcct ctgggcctgt ttcgaaaacc ttttgctgga ggccaccttc gcagaacgaa
      541 tcattatgct gatggcatca accggtggac tgtttctcgc cgtcaggttg ctccgatact
      601 acaaagaact ggatgagaaa cctgcctatt acaagttttt catttacttg ttcatagttc
      661 aggaagcggt ggccgtcgtt gccaatatcg ccggctctta cacctttgga agggctatgg
      721 ctgtaggggg ctttttcaac ctgatgcttg gcttccttgt attccaggct atcgtagttt
      781 tcaaagaaat cctggtggtt tcttatgaat attaccagcg caacaacgtg ttgggttcta
      841 tgctcaacct gttggaaatg aagcgcagtg cagaacgtat tttgcctgtg atcgcctgga
      901 ttgggtggtt catcattttc gccaagaacc tgaattttta tgatgtacta ttaggatcat
      961 ctgttgaatt cctggaggct ccaaggaaac tgggtaatgt tgaattcacc ttcagcagtg
     1021 tagccatttt ctttgttacc atttggattt caactttact ggcaagggtg gtggcattct
     1081 tgcttggcgg cggttctttg caggtgggct ccattaaaaa aaccaggttt ggcagtagta
     1141 tcctggtgct gaaactggtc atcatttcat tgggattgtt ggtggcgttt gcggcttccg
     1201 gtattcccat ggataagatc accatcatca tcggtgcttt gggtgtcggt attggctttg
     1261 gcttgcagac aatcgtaaat aacctcgtta gcggcattat cctggcgttt gaaaaaccta
     1321 ttgaaattgg tgatcagatt gaagtgggtg gcaggctggg caaagtgaaa gagattggca
     1381 tccgcagttc aaagctggcc acattcgaag gggccgaagt aatcatcccg aatggcgatc
     1441 tgctcagcca gcatgtggtg aactggacgc tgagccataa ccatcgccgg gtagagatca
     1501 ttgtgggcgt gagttatggc agccagttgg cacaagccaa ggaagtactg gagaaaatat
     1561 tgctcgaaaa tgaacacgta gataaatcac cagccccggc agtactggtg catcaattca
     1621 atactagctc aatcgatttc aggctgctct tctgg
//
LOCUS       DATIQF010000347         3376 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_248795,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000347 DATIQF010000000
VERSION     DATIQF010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3376)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3376)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3376
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248795"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            376..2373
                     /locus_tag="VLL95_05800"
     CDS             376..2373
                     /locus_tag="VLL95_05800"
                     /inference="COORDINATES: protein motif:HMM:NF040138.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HSR38409.1"
                     /translation="MRKQAILLFLAFFLSLASFANRVIIKGTINTPNGSPVVGKTVLI
                     SSVQNSNTACNIKDSTKTNPNGYFIDTLQCSGGDIRWVVVAFRNCEGQLISKTFEVPA
                     SGVIEVKLQDCVLSNASNCNAAFTIIPSPNGGGVFYFVSPKSTPGTVDTIVRRVWTFG
                     DGTANEGNNSEVKKEYKTPGVYEVCLKVTTQSGCTKTSCQRVEFKLPPLVCKAAFAFE
                     RIPTSAANAMGFRFISTPSIISAGDEIISRIWTFGDGSGLTGNEISPLHNYSKAGNYE
                     VCLTIKTKKGCESKYCMVVVAQVPNCKPALTYEIIPVPANTAGIAVRFNSRFDQGLLM
                     DTIISRSWIFGDGKILNENVPNPVHVYEKAGQYKVCLVTKTKLGCVSESCTTINVIAP
                     APTRCEAKFRFERGPENIGYFHAGPSLIAATDAIVKTVWSFGDGQTMTMNGLEAKHQY
                     ARAGTYEVCVTIVTKAGCESKWCGKVEIGPATNVQQCNVRFTIDNSRPGLVLFNSESS
                     FTQIPEDKIVSRRWDFGNGRVIDGNTVKTEMQYPFGGKFNVCLTIKTAKGCVSKICQT
                     VEVKQGQAPVDSSRLWLVKYYPNPAITQLFAVIYSPKENEEVEIAVVDVYGIVKSSRK
                     VKVPKGYSNHVVNTQFLLPGPYLLRVRSAYGVQSRSFYKVN"
     gene            complement(2460..>3376)
                     /locus_tag="VLL95_05805"
     CDS             complement(2460..>3376)
                     /locus_tag="VLL95_05805"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HSR38410.1"
                     /translation="NGLQYFSNRNITVKPANAVAGNPVTVRYYFTDAEVNELRAASGC
                     VDCKPPVDYTRLNVTKYADPDRAIEDGSITNNVNGTWSSVLNAGITFVPYDAGYYADF
                     TVTDFSEFYITDGNYDIALPAKWVRFDAAKEGSNNARLVWETANESNVLHYQPQVMMP
                     GGRFESIGQVAAQNALSATYSFADQRPGKSGTLLYRIQQTDKDGQVSYSETRSLRFGN
                     SSMRINTYPNPASNHVMVQMDAEKPLLLHWRITDVAGRTTLQGQWQMANAVEKWRINI
                     QSLPVGIYQLAIEWNNEKLVQKLVKVKE"
BASE COUNT          863 a          883 c          806 g          824 t
ORIGIN      
        1 caaccgaccc gtggcgctgt aattctgcac tttgtccatt ttggccttaa ccttttggac
       61 cagcaccatg gcatcctgcc cctgcacagc aagcatgggt aacagtccca acagccacaa
      121 cagccctccg attgatcgcc ggttttttac acgcattctt actttttgat tgataacaac
      181 gatggggcca aagcgttcac ccgtaagaaa tcttaggaaa gcttaaacca ttggcgctgg
      241 ctgtagtcga aatacggtag gtcgccctgg cggcctattg gctattgctc ccccccattc
      301 ccgcacttcg ttccattttc ttcttccttg acaagccaat agttaaacat tatatttaca
      361 taacaaatta ttgccatgag aaaacaagcc atactccttt tcctggcgtt cttcttgtct
      421 ttggcatcct tcgccaaccg ggtcatcata aaaggtacca tcaatactcc caatggcagt
      481 ccggtagtgg gaaagaccgt tttgatcagc agcgtacaga attccaacac cgcctgcaac
      541 atcaaagatt ccaccaaaac caaccccaat ggttacttca tcgatacgct gcaatgcagc
      601 ggcggcgaca ttcgctgggt agtggtcgcc ttccgcaact gcgaaggcca gcttatttcc
      661 aaaacatttg aagtaccggc atcgggtgtg atagaggtga agctgcaaga ctgtgttttg
      721 tccaatgcat ccaattgcaa cgccgctttc accatcatcc catcgcccaa cggtgggggt
      781 gttttctact ttgtgagccc caaatcaacc cccggcacgg tggataccat tgtccgcagg
      841 gtttggacct ttggcgacgg taccgccaat gaaggcaata acagcgaagt gaaaaaagaa
      901 tacaagaccc cgggtgtgta cgaagtgtgt ctgaaagtca ccacccaatc gggctgtacc
      961 aaaaccagtt gccagcgggt tgaattcaaa ctgccaccct tggtttgtaa ggcggctttc
     1021 gcatttgagc gcattcctac cagtgcggcc aatgccatgg gcttccgctt tatcagcacc
     1081 ccgtccatca tttcggcagg cgatgaaatc atcagccgca tatggacatt tggcgatggc
     1141 agcggtctca ccggcaatga aatcagccct ttacataact acagcaaggc gggcaattac
     1201 gaagtatgcc tgaccatcaa gaccaagaaa ggctgcgaaa gcaagtactg catggtggtg
     1261 gtagcccagg ttcccaactg taaacctgcc cttacttatg aaatcatccc ggtacctgcc
     1321 aacaccgcag gcattgccgt tcgcttcaac agcagatttg accagggcct gctgatggat
     1381 accatcatca gccgcagttg gatatttggc gatggcaaga tcctgaacga gaacgtgccc
     1441 aaccctgtgc atgtttacga aaaagccggc cagtacaaag tgtgcctggt caccaaaaca
     1501 aaactgggtt gtgtatccga atcctgcacc accatcaatg taatagcacc tgcccccacc
     1561 cgctgcgaag ccaaattcag gtttgaaaga ggaccggaaa acattggcta tttccatgca
     1621 ggtccttcgc tcatagccgc taccgatgcc attgtgaaaa cggtatggtc gtttggcgat
     1681 gggcagacca tgaccatgaa cgggctcgaa gccaaacacc aatatgccag ggcaggcact
     1741 tacgaagtgt gcgtaaccat cgtaaccaaa gcgggctgcg aaagcaaatg gtgtggcaaa
     1801 gtggaaatag gacccgccac caacgtgcag caatgcaatg tccgatttac catcgacaat
     1861 tcccgcccgg gactggttct gttcaacagc gaatcttcct tcactcaaat tcctgaagac
     1921 aagatcgttt cacgtcgctg ggattttggc aatggccgtg tgattgatgg caataccgtg
     1981 aaaaccgaaa tgcaatatcc tttcggcggc aagttcaatg tgtgcctcac catcaaaact
     2041 gccaaaggat gtgtatcgaa aatctgccag actgtagaag taaaacaagg acaggcgccg
     2101 gtggattcat cgaggttgtg gctggtgaaa tactatccca accccgccat cacgcagttg
     2161 ttcgccgtca tttattcgcc caaagaaaat gaagaagtgg aaattgcagt ggtggatgta
     2221 tacggcattg taaaatcgtc acgcaaggtg aaagtaccca aaggctacag caaccatgtt
     2281 gtgaatacgc agtttttact gcccggtccg tatctcctca gggtccgctc agcctatggg
     2341 gtacagagcc ggagttttta caaagtgaat tgacaggata tcttttattt agttagcgca
     2401 taaaaaagcg gctgcaattt gaattgcagc cgcttttgtt tctgaagaac ttaaaaggat
     2461 cactccttca ccttcaccag tttctgtacc agtttttcat tgttccattc aattgccaat
     2521 tgatagatac caacggggag cgactggata ttgatgcgcc atttctcaac cgcattagcc
     2581 atttgccatt ggccttgcaa agtagtacgg cccgccacat ctgtaatgcg ccagtgcagc
     2641 agcaggggct tttcagcatc catttgtacc atcacatggt tgctggcagg gttgggatag
     2701 gtattgatgc gcattgaact gttgccaaaa cgcaggcttc ttgtttcaga ataactcacc
     2761 tgtccatcct tgtcggtttg ctgaatgcgg tacagcaatg tacccgactt gccgggccgc
     2821 tgatcggcaa aagagtaggt ggcactcagt gcgttttgcg ctgccacttg tccaatgctt
     2881 tcaaatcttc cgccgggcat catcacctgc ggctggtaat gcagcacgtt gctctcgttg
     2941 gcagtttccc aaaccaggcg ggcattgttg ctgccttctt tggccgcatc aaagcgcacc
     3001 catttggcag gaagcgcaat gtcgtagtta ccatcggtga tgtagaattc ggagaagtcg
     3061 gtcaccgtga agtcggcgta gtagcctgcg tcataaggca cgaatgtgat gccggcattc
     3121 agcacactcg accaggtacc atttacatta ttggtgattg atccatcttc gatggcacgg
     3181 tcaggatcgg cgtacttggt cacattcaag cgggtgtaat cgacaggggg tttgcaatcc
     3241 acacaaccgg atgctgcccg cagttcattc acttccgcat cagtaaaata ataccgtaca
     3301 gttacaggat tgcctgcgac agcattagca ggtttgacag tgatgttgcg gttcgaaaaa
     3361 tactggagac cattgt
//
LOCUS       DATIQF010000348         4067 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_279162,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000348 DATIQF010000000
VERSION     DATIQF010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4067
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279162"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..636)
                     /locus_tag="VLL95_05810"
     CDS             complement(<1..636)
                     /locus_tag="VLL95_05810"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR38411.1"
                     /translation="MLSRLDIRNYAIIEKLSIDFDKGFNIITGETGAGKSILMGALGL
                     VLGDRADTSVLFNTTEKCVVEALFQPADKQQLKNLLEANELDADEQLIVRREIAANGK
                     SRSFINDTPVTLQVLRQFAGQMVDLHRQFDTQDLGDDAFQRNVLDALAGNASLVQQYA
                     AAYKAYTASALALKKLEAQQADANKELDYYRFLFEELEEAAFTDNELEEAET"
     gene            complement(762..>4067)
                     /gene="secA"
                     /locus_tag="VLL95_05815"
     CDS             complement(762..>4067)
                     /gene="secA"
                     /locus_tag="VLL95_05815"
                     /inference="COORDINATES: protein motif:HMM:NF009536.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HSR38412.1"
                     /translation="KIFGGSKSEKDVKQIQPLVEKINQYFQQYQSLTNDELRANTTRF
                     RTTIKERLAEIDREIVAKKEAGEALGADQLSEKDAIYHEVDDLIKERDKQIEAVLLDL
                     LPEAFATIKEAARRFKENTSLVSKATDLDRELAGQGKSYISIQGEEAIFQNSWTAAGG
                     QVTWNMVHYDVQLIGGIVLHQGKISEMATGEGKTLVSTLPAYLNALAGEGVHLVTVND
                     YLARRDSEWNGPVFEWLGVTVDCIDKHQPNSPERRRAYLADITYGTNNEFGFDYLRDN
                     MVHSPEEMVQRKHHFAMVDEVDSVLIDDARTPLIISGPVPKGDEQQYHLLKPRVSQLV
                     EQQRKVVNNYLIEAKKKISEGNDDPKDGGLALMRAYRGLPKNGALIKFLSEPGIKVKL
                     QKSENYYLADQQKEMPKVDEGLFFYIDEKNNQVDLTDKGLQYITGNAEDPEFFVLPDL
                     SVKLSEIEKSDKSAEEKLQLKESLLTDYAAKADRIHTVQQLLKAYTLFEKDVEYVVLD
                     EQVKIVDEQTGRILDGRRYSDGLHQAIEAKENVKIEAATQTYATITLQNYFRMYHKLA
                     GMTGTAETEAGEFWDIYKLDVVTIPTNVSVIRKDQEDLVYKTKREKYKAVIDEIEKLR
                     EAGRPVLVGTTDVAVSELLSKMLSGKKIPHNVLNAKQHAREAQIVAEAGMPGNVTIAT
                     TMAGRGTDIKLGPGVKDAGGLAILGTERHDSRRVDRQLRGRAGRQGDPGSSQFFVSLE
                     DDLMRMFGSDRIASLMDRMGYKEGEVIQHSMITKSIERAQKKVEENNFGIRKRLLEYD
                     DVMNKQRKVIYSRRHHALFGERLALDIDNAFFNAASDTVASFKEQNDYEGFKLAAIVN
                     LAIDTQISEQDFDKENEQTLAQRLYEEAMTNYNRKKAEIGRQALPVFQNIRSTQGAHI
                     MNVVVPFTDGRKGMNVLANLDKTLQTQGAELSNAMERSVALGLIDDSWKEHLRAMDDL
                     KQSVQTASYEQKDPLVIYKIEAFNLFKRMESELNKEMVKFLCHASIPIEQQQDIKEGR
                     EEKTDLSKLRQQKTELDSRGLEEIPQGNDYHDPSAGAVKQQPVHVAPKIGRNDPCPCG
                     SGKKYKQCHGRDL"
BASE COUNT          792 a         1111 c         1014 g         1150 t
ORIGIN      
        1 agtctctgct tcttccaatt cattgtcggt aaacgccgcc tcttccagtt cttcaaaaag
       61 gaaccggtaa taatccagtt ctttattggc atcggcctgc tgcgcttcca gctttttcaa
      121 ggcaagcgcc gaagcagtgt atgctttata agcagctgca tattgctgca ccagcgaagc
      181 attgccggca agcgcatcca gtacattgcg ctggaaagca tcatcgccca agtcctgcgt
      241 gtcgaactgc cggtgcaggt ctaccatttg cccggcaaac tgacgcaaca cctgcagcgt
      301 caccggtgta tcattgatga aactccggct cttgccattg gccgcaattt cgcgacgaac
      361 aatcagttgc tcgtcggcat ccagttcatt cgcttcgagc aaatttttca actgctgttt
      421 gtcagcaggc tgaaacaatg cttccaccac gcacttctcg gtggtgttga acaacacgga
      481 agtgtcggcc cggtcgccga gcaccaaacc cagggcaccc atcagaatac ttttaccggc
      541 tcctgtttca ccggtaatga tgttgaagcc tttatcgaaa tcaatgctca gcttttctat
      601 gatggcgtag ttccttatgt ccagacggga aagcatgggg cgaatttagc agttcccctg
      661 cactggcgat gtgtttgttg ttcaccggca tccaaaaaac cggaaacaaa aaagctgcac
      721 gggtgtgcag ctttttatgg acttaaaatg aaagatattc tttacaaatc gcggccgtgg
      781 cattgcttgt atttcttgcc gctaccacag ggacaaggat cgttgcgacc tatcttggga
      841 gccacatgca ccggttgttg tttcacggcg cctgcgctgg gatcgtggta atcattcccc
      901 tgcgggatct cttccagtcc gcggctgtcg agctctgtct tctgctggcg cagtttgctc
      961 aggtcggtct tttcttcgcg gccttctttg atgtcctgct gctgttcaat aggaatagaa
     1021 gcatgacaca ggaacttcac catttccttg ttcagttcgc tttccatgcg cttgaacagg
     1081 ttgaatgctt cgatcttata gatcaccagc ggatcttttt gttcgtagct ggcggtttgt
     1141 acactttgct tcaggtcgtc catggcacgg aggtgttcct tccatgaatc gtcgatcaaa
     1201 cccagggcca cactgcgctc catggcattg ctcaattcag cgccctgtgt ctgcagtgtt
     1261 ttgtccaggt tggccagtac gttcatgcct ttgcggccat cagtaaaggg tactaccacg
     1321 ttcataatat gggcaccctg tgtgctgcgt atgttttgga acaccggcag cgcctgcctg
     1381 ccaatctcgg ctttcttgcg attgtagttg gtcatcgctt cttcatacaa acgctgcgcc
     1441 agggtttgct cattctcctt gtcgaaatcc tgctcgctga tctgcgtgtc gatggccagg
     1501 tttacaatgg cagccagttt gaatccttcg taatcgtttt gctctttgaa gctggccacg
     1561 gtatcggaag cagcattgaa aaaggcgttg tcaatatcca gcgccaggcg ttcgccaaac
     1621 aatgcgtggt gacgacggct gtagatcacc ttgcgctgct tgttcatcac gtcatcatat
     1681 tccaacaggc gcttacggat gccgaagttg ttttcttcca ctttcttctg cgccctttca
     1741 atgctcttgg tgatcatgct gtgctggatc acttcgcctt ctttatagcc catgcgatcc
     1801 atgagtgaag caatacggtc gctgccgaac atgcgcatca ggtcgtcttc gaggctcacg
     1861 aagaattgag aagaaccggg atcgccctgg cgaccggcac gaccacgcaa ctggcggtct
     1921 acccggcggc tgtcgtgacg ctcggtaccc aaaatggcca ggccaccggc atcttttacg
     1981 ccgggtccga gtttgatatc cgtaccacga ccggccatgg tggtggcaat ggtcacattg
     2041 cctggcatac cagcttcggc cacgatctgc gcttcacggg catgctgctt cgcgttcagt
     2101 acgttgtgcg ggatcttttt accggaaagc atcttgctca gcaattcact caccgccaca
     2161 tcggtagtac ctaccagcac cgggcggcca gcttcccgca gtttttcaat ctcgtcaata
     2221 acggccttgt atttctcccg cttggtttta tacaccaggt cttcctggtc cttacggatc
     2281 acggatacat tggtaggaat agttactaca tccaacttgt agatgtccca gaattcaccc
     2341 gcttccgttt cggctgtacc ggtcataccg gccaacttgt ggtacatacg gaagtagttc
     2401 tgcagggtga tggtggcata ggtttgcgta gccgcttcaa tcttcacatt ttccttggct
     2461 tcaatggcct ggtgcaaacc atcgctgtag cggcgaccat cgaggatacg tcctgtttgc
     2521 tcgtccacaa ttttcacctg ctcatccagc accacatact ccacatcttt ttcaaacagg
     2581 gtgtatgctt tcaacaactg ctgcacagta tggatacgat cggccttggc ggcataatcg
     2641 gtcagcaggc tttctttcag ttgcagtttt tcttcggcgc tcttatcgct tttttcaatt
     2701 tcagaaagct tcacgctcag gtcgggcaac acaaagaatt ctggatcttc cgcattacca
     2761 gtgatgtatt gcaggccttt atcggtcagg tctacctggt tgttcttttc gtcgatgtag
     2821 aagaacaagc cttcgtccac tttgggcatt tccttttgct gatcggcgag gtagtagttt
     2881 tcgctcttct gcagttttac cttgatgccg ggctcactca ggaatttgat cagcgcaccg
     2941 ttcttgggca agccgcgata ggcacgcatc agcgccaggc cgccgtcttt gggatcgtcg
     3001 ttaccttctg atattttttt ctttgcttca atcaggtagt tgttgaccac cttgcgctgc
     3061 tgttctacca gctgcgatac gcggggcttc agcagatggt attgctgctc atcgcctttg
     3121 ggtactggtc ctgaaatgat caatggcgta cgggcgtcgt cgatcaatac gctgtccact
     3181 tcgtccacca tggcaaaatg gtgtttgcgc tgcaccattt cttcggggct gtgcaccatg
     3241 ttgtcacgca ggtagtcgaa accaaattca ttattggtac cataggtaat atcggccagg
     3301 taggcacgcc tgcgttcggg gctgttgggc tggtgcttgt cgatgcaatc cacggtcacg
     3361 cccagccatt caaatacggg tccgttccac tcactgtcac gacgggccag gtagtcgttc
     3421 acggttacca ggtgcacgcc ttcgcccgcc aatgcgttga ggtaggcagg caaggtgctc
     3481 accagtgttt tcccttcacc ggtggccatt tcagagatct tgccctggtg gagtacgata
     3541 ccgccaatca gctgcacatc atagtgcacc atgttccagg ttacttgtcc gccggcagcg
     3601 gtccagctgt tctggaaaat ggcttcttcg ccctggatgc tgatatagct tttgccttgt
     3661 cctgccagtt cgcggtcgag gtcggtagct ttcgacacca ggctggtatt ttctttaaag
     3721 cgacgggcgg cttccttgat ggtagcaaaa gcctcgggca gcaggtcgag caacacggct
     3781 tcaatctgct tgtccctttc cttgatcagg tcgtccactt cgtggtaaat ggcatctttt
     3841 tccgacaatt ggtcagcccc cagcgcttcg ccggcttcct ttttggcaac gatctcgcgg
     3901 tcgatttcgg ccaggcgctc tttgatggtg gtacggaacc gggtggtatt ggcccgcagt
     3961 tcatcgttgg tcagcgattg gtattgctgg aaatactggt tgattttttc taccagcggc
     4021 tggatttgct tgacatcttt ctcactcttg ctgccgccga aaatctt
//
LOCUS       DATIQF010000349         3488 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_294434,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000349 DATIQF010000000
VERSION     DATIQF010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3488
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294434"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..364)
                     /locus_tag="VLL95_05820"
     CDS             complement(<1..364)
                     /locus_tag="VLL95_05820"
                     /inference="COORDINATES: protein motif:HMM:NF024778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HSR38413.1"
                     /translation="MNEAILISAAALGFAGSLHCVGMCGPIALSLPVNADYRSKRGLG
                     VALYFAGKTTTYVSLGMLFGLLGHQLVIAGWQRGLSIVLGAAMLLFALLTIFKPAMFH
                     SNKLSLWIGDKLSPLMGHF"
     gene            complement(380..817)
                     /locus_tag="VLL95_05825"
     CDS             complement(380..817)
                     /locus_tag="VLL95_05825"
                     /inference="COORDINATES: protein motif:HMM:NF017559.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HSR38414.1"
                     /translation="MTIKWHWGTKIFLVYGLFVVFMLGMVYLCTQQHYDLVTPDYYAQ
                     ELKYQEVIDGQNNLQALGKKVEINATENLVTVQLPMNVSDGKAEVRFYRPDNASLDFN
                     MTIKDGNSIMVPAAKFKTGVYKVKSIWMHEGKRYYDEQTYFAP"
     gene            complement(832..2253)
                     /gene="ccoG"
                     /locus_tag="VLL95_05830"
     CDS             complement(832..2253)
                     /gene="ccoG"
                     /locus_tag="VLL95_05830"
                     /inference="COORDINATES: protein motif:HMM:TIGR02745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HSR38415.1"
                     /translation="MTEQHHIDHKTAEIEASFRDRMPSVTEKGKRNWIYAWQPKGKWY
                     ARRSLLSVFYVILFFSLPLIKIKGNPALQINIVEGKFSIFGMIFWPQDFFIFGVAMVT
                     FVVFIYLFTMIYGRVFCGWACPQTIFMEMIFRRIEWWIEGNPNQQRALKAAPWDTEKT
                     LKKVFKHVVFFGLSFVIANTFLAYIIGKDELFKIMTEPVTQHFGGFVALLLFTSAFYI
                     VYAFAREIVCTVICPYGRLQGVLLDKNSVIVAYDYNRGEPRGKGKRPSENGLGDCIDC
                     KQCVVVCPTGIDIRNGTQLECVNCTACIDACNAVMDKVGLPRGLVRYASENQLAENQP
                     FRFTGRMKGYSVVLVLLISGLVTLLATRNDVDVTLLRAQGQLFQEVGKDSLSNLYHIN
                     MVNKTHREVKLEMKVEGLPGRINIVGHTGLVTPAEGQAETTFFLILPKSVIKKRDSDV
                     KVGIYKDGKRIRTLKTSFLGYTE"
     gene            complement(2288..3337)
                     /locus_tag="VLL95_05835"
     CDS             complement(2288..3337)
                     /locus_tag="VLL95_05835"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase N-terminal
                     domain-containing protein"
                     /protein_id="HSR38416.1"
                     /translation="MVLLLVAIAILGNVVNNAASLFRDKLRKQRESGAAGEGSSNSAL
                     AIAVLLVSSLLVSAGAMAQEAAGAAAAAAPEPPTTINGLSAFTFYLLISVIAVEIIIL
                     IALTYQLKFLVGIESKRALKAAGEVVAPKESWWWRFNKSVAVEEEQAIDLSHDYDGIS
                     ELDNKMPPWWIAAFAITILFGGVYLWRYHVAHSAPLMHEELEIAMKQAEVEKAAYLAK
                     SANNVDENTVKMLDAGGVALGKSLYDANCIACHGAEGQGGVGPNLTDKFWIHGGSIND
                     VFKTLKYGVVEKGMRSWKDDFSPMQLAQLASFVKSLNGTNPPNPKEPQGQEYAEGAAP
                     AAAVTDSTSGAPAAK"
     gene            complement(3292..>3488)
                     /locus_tag="VLL95_05840"
     CDS             complement(3292..>3488)
                     /locus_tag="VLL95_05840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38417.1"
                     /translation="LQKEIVRIVSGTTFNGLALLDTGTNANNTFVGTASFQVGVTRWR
                     KCWCLSWSCCWWPLPFWATW"
BASE COUNT          896 a          913 c          795 g          884 t
ORIGIN      
        1 aaaaatggcc catgagtggc gacagcttat cacctatcca aagggaaagc ttgttgctgt
       61 ggaacatcgc gggtttgaaa atggtcaata aggcgaagag caacatggct gcacccagta
      121 cgatgcttag gccgcgttgc cagccggcga tcaccaattg gtgacccagc aatccaaaca
      181 acatgcccag cgatacgtag gtagtggttt tgccagcgaa ataaagtgct acgccgagtc
      241 ctcttttgga acggtaatct gcatttaccg gtaatgaaag cgcaatcggt ccacacatgc
      301 caacgcagtg aagactgccg gcaaatccca gggctgcagc acttatgagg attgcttcgt
      361 tcatgctttc aaaataccgt taaggagcaa agtaggtctg ttcgtcataa taacgcttgc
      421 cttcatgcat ccatattgat tttactttgt acacgccggt tttaaattta gcagcaggca
      481 ccataatact gttgccatcc ttaattgtca tgttgaaatc gagactggcg ttgtcgggcc
      541 tgtaaaacct gacctccgct ttgccatcgg aaacattcat aggcaactga accgtcacca
      601 aattctccgt ggcattgatc tccacttttt ttcccagggc ctgcaaatta ttctgaccgt
      661 ctatcacctc ctggtacttc aactcctggg catagtaatc aggcgtaacg agatcgtagt
      721 gctgttgggt gcagagatag accatgccca gcatgaacac tacaaacaat ccgtagacga
      781 gaaaaatctt tgttccccaa tgccatttaa tagtcatagt aaaaagtggg tttattctgt
      841 gtatccaagg aaactggttt tcagtgtccg tatgcgttta ccgtctttat aaataccaac
      901 tttcacatca ctgtcccgct ttttaattac agatttcggg agaatgagga agaaagtggt
      961 ttctgcctgg ccttctgccg gtgtaaccaa accggtgtgg ccaacaatat tgatccgacc
     1021 gggaagtcct tccaccttca tttccagttt cacttcgcgg tgggtcttgt tcaccatatt
     1081 gatgtgatac aagttgctga ggctgtcctt gcctacttcc tggaacaatt gtccctgggc
     1141 acgaagcagg gtcacatcca catcattgcg ggtggccagc agcgtcacca gcccggagat
     1201 cagcaatacc aataccactg agtaaccctt catacgaccc gtgaaacgga aaggctggtt
     1261 ctcggccaat tggttttcgc tggcatagcg caccagtcca cgtggaagtc ccaccttgtc
     1321 catcacagca ttacatgcat caatacaggc cgtacagtta acgcattcca gctgcgtacc
     1381 gttacggata tctataccgg tggggcacac taccacgcac tgcttacagt cgatacaatc
     1441 gcctaatcca ttttcactcg gacgcttgcc cttacccctt ggctcaccac gattgtaatc
     1501 atacgccacg atcacactgt tcttatccag caataccccc tgcaacctgc cataaggaca
     1561 aattacagtg cagacaattt cacgggcaaa agcataaaca atgtagaacg cactggtaaa
     1621 caacaacaat gccacaaagc caccaaagtg ttgggtgacc ggctctgtca ttattttaaa
     1681 cagttcatcc tttccaatga tataggcgag gaaagtgttg gcaattacga acgacaatcc
     1741 aaagaataca acgtgtttaa aaaccttttt cagtgttttc tccgtatccc agggagcggc
     1801 tttcagtgcc cgttgctgat tggggttgcc ttcaatccac cactcgatgc ggcggaatat
     1861 catttccatg aaaatggttt gaggacaagc ccatccgcaa aacacccgac cgtaaatcat
     1921 ggtgaacagg taaatgaata ccacgaacgt caccatggcc acaccgaaga tgaaaaagtc
     1981 ctgtggccag aagatcatgc cgaagatgga aaatttccct tcaacgatat ttatctggag
     2041 tgcagggttg cctttaatct taatcaaagg cagcgaaaag aatagaatga catagaacac
     2101 actcaatagc gaccggcgtg cataccactt ccctttaggt tgccaggcgt atatccagtt
     2161 tcgctttccc ttttctgtga cagaaggcat cctgtctctg aaggatgcct ctatctctgc
     2221 tgtcttatga tcgatgtggt gttgctcagt catattgttt gtgtgctctt gaaatcagcg
     2281 cggcaattta ctttgctgcg ggtgcaccgg aggtgctatc agtcaccgcg gctgctggag
     2341 cggcgccctc tgcatactcc tgcccttgtg gttcttttgg attgggagga ttggtgccat
     2401 taagcgactt gacaaaactt gccaactggg ctagctgcat gggtgagaaa tcatctttcc
     2461 agctgcgcat gcctttttcc accacgccat acttaagcgt tttgaacaca tcattaatag
     2521 atccgccatg aatccaaaat ttatcggtga gattcggacc tacgccgccc tgaccttctg
     2581 ctccgtgaca ggcaatacag ttggcatcat aaagtgactt gccgagtgca acgccgccgg
     2641 catccaacat tttgaccgtg ttctcatcta cgttattggc cgattttgcc aggtaggcag
     2701 ctttttccac ttctgcctgt ttcatggcaa tttccaattc ttcgtgcatc aacggtgcag
     2761 aatgggccac gtggtagcgc cacaaataca caccaccaaa caggatggta atggcaaaag
     2821 cagcaatcca ccagggtggc atcttgttgt ccagttcact gatgccatca tagtcatggc
     2881 tcaggtcaat cgcttgctcc tcttccacag ctacagattt gttgaagcgc caccaccagc
     2941 tttcctttgg tgccaccact tcacctgccg ctttcaaagc acgtttgctt tcaataccta
     3001 ccaggaattt aagctgatag gtcaacgcga ttaaaatgat tatttcaacg gcgattactg
     3061 aaatcaacag gtaaaaggta aaagcagaaa gaccattgat ggtagtaggt ggttctggag
     3121 cggcagctgc tgctgcacct gcagcctcct gcgccatggc gccggccgaa accaacaaac
     3181 tgctcaccaa caacactgca atagcaagcg cactattgct gctgccttcg ccggcagcac
     3241 ccgattcacg ctgcttgcgc agcttgtctc tgaacaagga tgcggcgttg tttaccacgt
     3301 tgcccaaaat ggcaatggcc accagcagca ggaccatgat aaacaccagc atttgcgcca
     3361 gcgggttacg ccgacctgga agctggcggt gccgacgaag gtgttgttgg cgttggtgcc
     3421 ggtatcgagc agggccagac cgttgaaggt ggtgccggaa acgatacgga caatttcctt
     3481 ttgcagct
//
LOCUS       DATIQF010000350         2564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_66332, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000350 DATIQF010000000
VERSION     DATIQF010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66332"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..414
                     /locus_tag="VLL95_05845"
     CDS             <1..414
                     /locus_tag="VLL95_05845"
                     /inference="COORDINATES: protein motif:HMM:NF042462.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbnP family protein"
                     /protein_id="HSR38418.1"
                     /translation="FWIGVDSARNVSGVQTGALDPANGMFWTWNSGYIFAKLEGRSPV
                     SPAPLTAVTYHIGGFRTGQNALRPISIPLPTVISVNNSSRYTITLTADVMKWFRSKTD
                     ISIATEPFTMEPGSLAMKVADNYAQMFALKEVKKN"
     gene            414..1442
                     /locus_tag="VLL95_05850"
     CDS             414..1442
                     /locus_tag="VLL95_05850"
                     /EC_number="1.11.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF015131.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c peroxidase"
                     /protein_id="HSR38419.1"
                     /translation="MQIRLIILGLFTILVIAACDKRSFTSMPETTPVAFKTPAGWPAP
                     VYNFADNPLTEQGIALGKKLFYDGRLSQDGNFPCASCHQQPAAFGTFEHDLSHGFNNS
                     HTLRNAPSLQNLAWMPLFHHDGGITHLDLQPLAPITNPVEMAETIDNVLNKLRSDEQY
                     RGLFKAAFGSEEINTQRMTKALSQFMLTMVSADSRYDKMKRGEVTFTLPESLGYDIFK
                     AKCASCHAEPLFTDFSFRNTGLPVDRVLQDVGRMRITKNPADSLKFKVPTLRNVMKTS
                     YYGHDGRFFDVLNVLNHYSDGVVNGPTTDPLVKNKIPLSNFEKGQLIAFLSTLTDSAF
                     LANKAFAQ"
     gene            1548..>2564
                     /locus_tag="VLL95_05855"
     CDS             1548..>2564
                     /locus_tag="VLL95_05855"
                     /inference="COORDINATES: protein motif:HMM:NF014051.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HSR38420.1"
                     /translation="MSSVKKLAGQTLWYGVPTIASRFLGYLLSVFLFRWYSPVLTADI
                     TQVYALIPFLNILFTYGLETAYFRFASKTDEQRLFNTLSISIISSTILFSVLLLFFTG
                     PLATFTSLQDRPEFFRWMVYILVFDTLAVIPFARLRQQERPRKYAFVKVVNVVLTVVI
                     SVYFLRFCPEQFAKDPNSSLLVFYNPNIGIGYYIIANAIASAVTLLLLWDEWKGFQLQ
                     FDSRLWKEVMQYAYPLIIVGFGGMINEMLSRLVYSYVLDLPMEEEKRQLGIFGASYKV
                     AVLITIFIQVFRMAAEPFFFKQSVDKNAPRTYARVMKFFVLACCLMWLGIALALPLIA
                     KLAYG"
BASE COUNT          603 a          695 c          642 g          624 t
ORIGIN      
        1 ttttggatag gcgtggacag tgcccgcaat gtgagcggcg tacaaaccgg ggcgcttgac
       61 ccggccaatg gcatgttctg gacctggaac agcggttaca tctttgccaa gctggaagga
      121 cgttcgccgg tgagccctgc gccacttact gcagttacct accacatcgg tggtttccgc
      181 acagggcaaa atgccttgcg tcccatcagc attccattgc ccaccgtgat atccgtgaac
      241 aacagcagcc gctataccat cacgcttact gccgatgtga tgaaatggtt ccgaagcaaa
      301 acagatattt ccattgccac cgaaccattc accatggaac ccggttcttt ggctatgaag
      361 gtggccgata attatgcgca gatgtttgcg ctgaaggagg tgaagaagaa ctgatgcaga
      421 tccggctgat catattgggc cttttcacca tcctggtaat tgccgcttgc gacaagcgca
      481 gctttacctc tatgcccgag accacgccgg ttgctttcaa aacaccggcc gggtggccgg
      541 cacccgtgta taattttgcc gacaatccgt tgaccgaaca aggcattgcg ttgggcaaga
      601 aattgtttta tgatggccgg ttgagccagg atggcaattt tccctgtgcc agttgccacc
      661 agcagccggc agccttcggc actttcgagc acgacctgag ccatggtttc aacaacagcc
      721 acacgctgcg caatgcgcct tccctgcaaa acctggcctg gatgccgctc tttcaccacg
      781 atggcggcat cacgcatctc gacctgcagc ccctggcgcc catcaccaac cccgtggaaa
      841 tggcagagac cattgacaat gtgctgaaca aactgcgcag cgatgaacaa taccgcggcc
      901 tgttcaaagc cgctttcggt tcggaagaga tcaacacgca gcgcatgacc aaggcgctca
      961 gccagttcat gcttaccatg gtaagtgccg acagccgcta cgacaaaatg aaacgcggtg
     1021 aggtcacttt tacattgccg gaaagcctgg gctacgatat tttcaaagcc aagtgtgcca
     1081 gctgccatgc ggaaccgttg ttcaccgatt tcagtttccg gaacacgggc ctgccggtgg
     1141 accgggtgtt gcaggatgtg ggccggatgc gcattaccaa aaacccggcg gacagtctca
     1201 aattcaaagt gcccacgctg cgcaacgtaa tgaagacaag ctattacggc cacgatggcc
     1261 gcttctttga tgtgctgaat gtgctgaacc attacagcga tggcgtagtg aacggcccta
     1321 ccaccgaccc gctggtgaag aacaaaatcc ccctttccaa ttttgaaaag gggcaattga
     1381 tcgctttcct cagcaccctt accgacagtg ctttcctggc gaacaaggca tttgcgcagt
     1441 agtactgccc cgcatttcaa taaaaagcag gtgctggcgt taaagatgcg cccaacgcca
     1501 cgaacgttgg aggcagaatg ataatttagc aaccaaatca agcttcattg agtagtgtaa
     1561 aaaagctggc aggccaaacc ttatggtatg gagtgcccac cattgcgagt cgattcctgg
     1621 gatacctgtt gtcggtgttt ttgttcaggt ggtacagtcc ggtattgact gctgacatca
     1681 ctcaagtata tgccctgatc ccttttctca atattctgtt cacttacgga ttggaaacgg
     1741 cttatttccg atttgcttcc aaaaccgatg agcagagact cttcaatacg ctgagtattt
     1801 ccattatctc cagtaccatt ttgttttcgg tactgctgct gtttttcacc ggcccgctgg
     1861 ccactttcac ttccttgcag gatcggcccg agtttttcag atggatggta tacatcctcg
     1921 tattcgatac actggccgtc attcctttcg caaggttgcg acagcaggaa aggccccgca
     1981 aatatgcttt tgtaaaagtg gtgaacgtgg tactcaccgt tgtcatcagc gtttacttcc
     2041 tgcgcttctg ccccgaacaa tttgccaaag acccgaacag ttcattgctg gtgttttaca
     2101 accccaacat cggcatcggt tattacatca ttgccaatgc catcgccagc gcagtgacgc
     2161 tgctgttgct gtgggatgaa tggaaaggct ttcaactgca gtttgacagc cggctttgga
     2221 aagaggtgat gcaatatgcc tatcccctca tcattgtagg ctttggcggc atgatcaatg
     2281 aaatgctgag ccgcctggtg tacagttatg tactcgattt gcccatggaa gaagagaaaa
     2341 gacaactggg catatttggc gccagctaca aagtggcggt gctcatcacc atcttcatcc
     2401 aggtattccg catggcggca gagcccttct tcttcaagca aagcgttgat aaaaatgcgc
     2461 cccgcaccta cgccagggtg atgaagtttt ttgtgctggc ctgctgcctc atgtggctgg
     2521 gcatagcgct ggcattaccg ctcattgcca aactggctta tggc
//
LOCUS       DATIQF010000351         2747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_203491,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000351 DATIQF010000000
VERSION     DATIQF010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203491"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..456
                     /locus_tag="VLL95_05860"
     CDS             <1..456
                     /locus_tag="VLL95_05860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38421.1"
                     /translation="TIKKPFASAFTKSLNMKTQTRRHRFFQFAASTLAGAAILFLLSF
                     VQNGPPPQKGEYFLSSFFRNEVSWLALVIFAILAFAACYALQWNAWITGFGLIAVLPI
                     LAIVESTIYRGSHNLIPFEMMLYAYFALPGLAAALLGAFLARRKNRTSQ"
     gene            524..1489
                     /locus_tag="VLL95_05865"
     CDS             524..1489
                     /locus_tag="VLL95_05865"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HSR38422.1"
                     /translation="MKAAVHTRYGPPEVVQVKDIPQPEPKPNEVLIQVHASTVNRTDC
                     GFRSAEYFISRFFSGLFKPKQTTLGSEFAGVITAIGPSVTGFKVGDRVFGFNDQQFGA
                     HAEYMLMPESGAMALVPEGMPFTTAAALTEGSHYALVDIRAANVKQGDDVLVYGATGA
                     IGSAAVQLLKYFGARVTAVCATPHVPLVQSLGADEVIDYLQEDYTTRSRRYDFVFDAV
                     GKTSFGQAKKVLKEKGIYISTELGKNGENVWRSFTTRFGSGPKLLFPLPTASRQDVEF
                     LKTLAEQGHFKPLIDRIYPLDQIVEAYRYVETRQKLGNVIIQVQA"
     gene            complement(1554..>2747)
                     /locus_tag="VLL95_05870"
     CDS             complement(1554..>2747)
                     /locus_tag="VLL95_05870"
                     /inference="COORDINATES: protein motif:HMM:NF019344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR38423.1"
                     /translation="AIEQLKLEAEQAERNGDYGRVAEIRYGKIQEQEEQIREYSAQLD
                     AISEKRLLKEEVDAEDIAENISKATGIPVSRMLQSEREKLLHLEGELHRRVVGQEEAI
                     VAVSDAIRRSRAGLSDPRKPIGSFIFLGTTGVGKTELAKALAEYLFDDETMMTRIDMS
                     EYQEKHTVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSVVLLDEIEKAHPDVWNVLLQV
                     LDDGRLTDNKGRVVNFKNTIIIMTSNIGSHLIQDAFDGVDESNIDEATEKAKLEVMQL
                     LRQTIRPEFLNRVDEIIMFQPLLRKEIRGIINIQLHNLKKLVAENGIELHFSDYALDY
                     LVENGYDPQFGARPLKRLIQKEIVNQLSKRILAGDIDKTKPVLVDVFDGVVVFRNEVP
                     EPASK"
BASE COUNT          609 a          743 c          688 g          707 t
ORIGIN      
        1 accattaaaa aaccttttgc atcagcattc acaaaaagct tgaacatgaa aacgcaaacc
       61 cgtagacacc ggttcttcca gtttgccgct agtacattgg caggggccgc tatcctgttt
      121 ttactcagtt ttgtacagaa cggtccgcca ccccaaaagg gagagtactt cctgtcatcc
      181 tttttcagga atgaagtttc ctggctggcg cttgtcattt ttgccattct tgcttttgcc
      241 gcttgttatg cattgcaatg gaatgcatgg atcaccggtt ttgggttgat tgctgtgctg
      301 cccatccttg ctatcgtgga gagcactatt taccgcggca gccacaacct cattcccttt
      361 gaaatgatgc tttatgccta cttcgccctt cccggcctgg cagcggcatt gttgggcgcc
      421 ttcctggccc gcaggaaaaa cagaacatca cagtgatttg catgtgaagc agccatccga
      481 aaaaaacatc actccttttc acctccaaaa gaacaattga aacatgaaag ccgcagtaca
      541 cacccggtat ggtccacccg aagtggtgca agtgaaggat attccgcaac cagaaccaaa
      601 accaaatgag gttttgatac aagtgcatgc cagcaccgtg aacagaaccg actgcggctt
      661 caggagcgca gaatatttca tctcccgatt tttcagtggc ttgttcaaac ccaaacagac
      721 gacgctgggc agtgaatttg ccggtgttat cactgccata ggacccagcg taacggggtt
      781 caaagttggt gaccgggtat ttggcttcaa cgaccagcag tttggcgccc atgccgagta
      841 catgctgatg ccggagagcg gcgccatggc cctggtgccc gaaggaatgc cattcaccac
      901 agcggcagcg cttacggaag gctcgcatta tgcattggtg gatatacggg cggccaacgt
      961 aaaacagggt gacgatgtac tggtgtacgg cgctaccggc gccattggtt cggctgccgt
     1021 gcagttgctg aaatattttg gcgcccgggt aacggcggta tgcgctacgc cgcatgtgcc
     1081 attggtgcaa tcgctgggcg ctgatgaggt gatcgattac ctgcaggaag actacaccac
     1141 ccgaagccgg cgctacgatt ttgtgtttga tgctgtcgga aaaacttcgt tcgggcaggc
     1201 gaaaaaagta ttgaaagaaa aaggcatcta catctccacc gagctgggca agaacgggga
     1261 gaatgtatgg aggtctttca ccacccgttt tggttcaggc cccaagctgt tgttcccctt
     1321 gcccacggcc agccggcagg atgttgagtt cctcaaaaca ctggcggagc agggacattt
     1381 caaaccgttg atcgatcgca tctatccctt ggatcagatt gtggaagcgt atcgatacgt
     1441 ggagacccgg cagaagttgg ggaatgtcat tatccaggtg caggcctgat gcaaaaaatt
     1501 agccccgcct ttcggcgggg cttttcaatc accacaaatc caatcaacca catttatttg
     1561 gaggcgggct ccggtacttc gtttcgaaat accaccacgc cgtcgaatac atctaccagc
     1621 accggtttgg ttttatcaat atcgccggcc agtatgcgct tgctcagctg gtttacgatt
     1681 tccttctgga tcaaccgctt caatggacgg gcgccgaact gcggatcgta gccgttttcc
     1741 accaggtaat ccagggcgta atcgctgaag tgcagctcaa tgccgttttc agccaccagc
     1801 tttttcaggt tgtgcagctg gatattgatg atgccccgaa tttccttgcg gagcaaaggc
     1861 tggaacatga tgatctcgtc caccctgttc aggaattcgg gccgtatggt ttggcgcagc
     1921 aattgcatca cttccagttt cgctttttcg gtagcctcgt cgatattgct ctcatctacg
     1981 ccatcgaaag catcctggat gagatggctg ccgatgttgc tggtcatgat gatgatggtg
     2041 ttcttgaaat tgaccacacg acctttgttg tcggtcaggc ggccatcgtc gagcacctgc
     2101 agcaacacgt tccaaacatc gggatgcgct ttctcaattt catcgagcag taccacgctg
     2161 tagggtttgc gacgcacggc ttctgtcagt tgtccgcctt catcgtagcc tacatagccg
     2221 ggaggagcac ctaccagtcg gctcacggta tgtttctcct ggtattcact catgtcgatg
     2281 cgggtcatca tggtttcatc atcaaacagg tattctgcca atgccttcgc cagttctgtt
     2341 ttacccacac ccgtagtgcc caggaaaata aaggaaccaa taggtttgcg gggatcgctc
     2401 aaaccggcac gacttctgcg gatggcatcg ctcacggcca caatggcttc ttcctgcccc
     2461 accaccctgc ggtgcaattc accttccagg tgcagcagct tttctctttc gctctgcagc
     2521 attcggctta cgggaatgcc ggtggctttt gaaatgtttt ccgcgatgtc ttctgcatcc
     2581 acttcttctt tcagcaaacg cttttcgctg atggcatcca gctgggcgga gtattccctg
     2641 atctgttctt cctgctcctg tatcttaccg taacgtattt cagccacccg gccataatcg
     2701 ccattgcgtt cggcttgttc agcttccagt ttcagctgct caatggc
//
LOCUS       DATIQF010000352         2283 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_21011, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000352 DATIQF010000000
VERSION     DATIQF010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21011"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..905)
                     /locus_tag="VLL95_05875"
     CDS             complement(<1..905)
                     /locus_tag="VLL95_05875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38424.1"
                     /translation="MPAENEFEKSVQSMLDGLQVNPAPSDWQAVYEKLHPTKKRRIIW
                     WWLPVLLALVVAGVWMRNEPSANSRPAVVGIGNTAAKEQNPSINPAETNTENEPAPAN
                     TASAIVADEESKQAVDDKSAFQQAAEVSAANAVSHENMDHASVENKKQDDLSSTAVIN
                     TDTVDPGFLATSGYSLTESFHTKASNDFAVPVASMFSPQPDHTTELPTLAASAATPQL
                     KKQRQWNWLLYAGAGINISASPLNMTKAAQDMSTGSPTNVTLVTQSQQSGGWHASAGV
                     LAQHALGRKWNLQIGTGFNYGTWHG"
     gene            complement(889..1455)
                     /locus_tag="VLL95_05880"
     CDS             complement(889..1455)
                     /locus_tag="VLL95_05880"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSR38425.1"
                     /translation="MLPASQLVAKCLENNAAAQKQLYDAFAPQMMGVCYRYTRSMEEA
                     SDVLQEGFVRVFRNLRQWNGEGELGAWIRRIMVNTALNWIRDNQKIKWVEEEHIPEHD
                     PTQPVSTPLDSLQARQLADLIRQLPAGYQTVFNLHAAEGYTHVEIAQMLGISEGTSRS
                     QYLRARRMLAALINTHQQENKISYAGRK"
     gene            1613..>2283
                     /locus_tag="VLL95_05885"
     CDS             1613..>2283
                     /locus_tag="VLL95_05885"
                     /inference="COORDINATES: protein motif:HMM:NF015291.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GH3 auxin-responsive promoter family protein"
                     /protein_id="HSR38426.1"
                     /translation="MKILSPAISRLARLRLAAIEHWMNNPLDAQRDVLQHLVTAGQYT
                     EFGKAHNFSTTFRIRDFKAAVPIQQYDDLKPYIERMMEGEDNLLWNTPVEWFAKSSGT
                     TSERSKFIPVSQESLDENHYQGNKDVLTLYYFNYPDSDLLTGKGLVIGGSHQIASVNE
                     EIHYGDLSAVLLQNAPVWSQWIKTPELSIALMDEWETKIEKLAQSTIQEDVTSVSGVP
                     TWTLVL"
BASE COUNT          491 a          582 c          625 g          585 t
ORIGIN      
        1 ttgccatgcc aggtgccata gttgaagcct gtgcctattt gcagattcca tttgcgcccc
       61 agggcatgtt gggccagcac accagcgctg gcatgccaac cgcccgactg ttgcgactgt
      121 gtcaccagcg tcacattggt aggggagcca gtactcatat cctgtgcggc cttcgtcatg
      181 ttgagggggc tggcactgat gttgatgccg gcacctgcgt agagcaacca attccattgg
      241 cgctgttttt tcagttgcgg agtcgcagcc gatgcagcaa gtgttggcag ttcggttgta
      301 tgatccggct gtggagagaa cattgaagcc acaggcactg caaaatcatt ggaagctttg
      361 gtatggaatg attctgtgag tgaatagcca ctggttgcca ggaagcctgg gtcaacagtg
      421 tcggtgttga ttaccgcagt tgatgaaaga tcatcctgtt ttttgttttc taccgatgca
      481 tggtccatgt tttcatggga tactgcattg gctgccgata cttcagcagc ttgttgaaag
      541 gcagacttgt catcaacggc ttgttttgat tcctcgtcag caacaattgc tgaggcggtg
      601 ttggctggtg ccggttcatt ttctgtattt gtttcagcag ggttgataga cggattttgt
      661 tctttggcag ctgtatttcc aatgcccacc acggccggcc ggctgttggc actgggttcg
      721 ttgcgcatcc atacgcctgc caccaccagc gccagcagca caggcaacca ccaccaaatg
      781 atgcggcgct ttttcgtagg atgcaatttt tcatacacag cctgccagtc ggaaggcgca
      841 gggtttacct gcaagccgtc gagcatgctt tgcaccgatt tttcaaattc attttctgcc
      901 ggcatacgaa attttgtttt cctgttgatg tgtgttgatg agtgctgcca gcatccggcg
      961 ggcccgcagg tattggctgc ggctcgtgcc ttcgctgatg cccagcatct gggctatttc
     1021 cacatgggtg tacccttctg ctgcatgcag gttgaatacg gtctggtagc cggcgggcag
     1081 ctgacggatc aggtcggcca gctgccttgc ctgcaggcta tccaggggtg tggaaacagg
     1141 ctgtgtgggg tcgtgttcgg ggatgtgttc ttcttctacc cattttattt tctgattgtc
     1201 tcttatccag ttgagtgccg tgtttaccat gatccgcctg atccaggcac ccagttcgcc
     1261 ttcgccattc cattgccgca ggttgcggaa aacccgtaca aatccttcct gcaatacgtc
     1321 gctggcctcc tccatgctgc gggtgtagcg atagcaaacg cccatcatct gcggcgcaaa
     1381 cgcatcgtac aactgctttt gggcagctgc attgttctca aggcatttgg ctactaattg
     1441 gctggcaggg agcatggttt acttcaagtg ttgacacgga tttggtacag accgttgcgc
     1501 atcctgcaaa gaaactccgc aaagccccaa atattttcat aataggctga caggcaaggg
     1561 agtgggatgg ttggcggtgg tttgttcggc tttctgtatt ttgccgccgg gcatgaagat
     1621 tttaagtccg gccatatcac gactggcacg tctgcgcctt gctgccattg agcattggat
     1681 gaacaatccg ctcgatgcac aacgtgatgt gctgcagcac ctggtgactg ccggacaata
     1741 cacagagttt ggaaaagcgc acaacttcag caccactttc cgcatccgcg atttcaaagc
     1801 cgccgttccc attcagcaat acgatgacct gaaaccctac atcgaaagga tgatggaggg
     1861 cgaggacaac ctgctgtgga ataccccggt ggagtggttt gccaaaagca gcggcaccac
     1921 cagcgaacgc agcaagttca taccagtaag ccaggaaagc ctggatgaaa accattacca
     1981 gggcaataag gacgtactga cactttacta tttcaactat cccgacagcg atttgctgac
     2041 aggcaaaggc ctggtgattg gtggcagcca ccagatcgct tctgtcaacg aagagatcca
     2101 ctatggcgac ctcagtgcgg tacttctcca aaatgcgccg gtgtggagcc agtggatcaa
     2161 aacgccggaa ctgagcattg cgctgatgga tgaatgggaa accaagattg aaaagctggc
     2221 ccaaagtacc atccaggaag atgtgacctc tgtaagtggc gttcctacct ggacgctggt
     2281 act
//
LOCUS       DATIQF010000353         5910 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_127462,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000353 DATIQF010000000
VERSION     DATIQF010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5910
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127462"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..808
                     /locus_tag="VLL95_05890"
     CDS             <1..808
                     /locus_tag="VLL95_05890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38427.1"
                     /translation="GSGTQINNVQVSYGNDDAYEFFGGTVNAKNLISFAAADDDYDFD
                     FGYVGRIQFAVALRDPNFVDAGDAGNGVECDNDGSGSNALPYTRPVLSNFTWVGPNNQ
                     PASNGTVLTNHNFNMRWRRATSFSVHNSILMGYNRGGFSIESDTTANGYKLNTRSAFR
                     NNLVHAVASAFRTSATTLLTGAEMEAKALAEGNTKHGSPDEIGLTDPFKLTAPNFLPK
                     AGSPALSGAVFTGSDFSGVSFWTQVAYRGAFGADNWMANWTSFTPQTNVY"
     gene            879..1379
                     /locus_tag="VLL95_05895"
     CDS             879..1379
                     /locus_tag="VLL95_05895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38428.1"
                     /translation="MIRFFGGTVFFSLLLFGCGNPQTGERSSSAVNADSVMLITTGID
                     LAPALAETDSVAILFYKDPFGGEPDRYTRYYTQFNTATDSVIRVLKTNLADTYQEDTL
                     RQCRSEGKIFCFVKGKPVQTIYFTHQSEACFHLYFIHTGRYYYLPFDKSLETRLRQLK
                     QEAWEP"
     gene            1597..2196
                     /locus_tag="VLL95_05900"
     CDS             1597..2196
                     /locus_tag="VLL95_05900"
                     /inference="COORDINATES: protein motif:HMM:NF025736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HSR38429.1"
                     /translation="MMVMVLLWVLALAWLLLQGREAAFLKLRPADDFATDLFFQYITH
                     VGDGLFAVAAVLVLLLMRQFGFAFVAFFGYAVSGLLAQLLKRLISEWRPAPYFQQRGI
                     SIHAVDGVDLLQSATSFPSGHTASAFSLAAALVLMSRWWQQRWMLAVLLACTAGYSRV
                     YLGQHFLQDVLAGSFLGVISSVAGAWVLEKWQPRFYRKQ"
     gene            complement(2197..2430)
                     /locus_tag="VLL95_05905"
     CDS             complement(2197..2430)
                     /locus_tag="VLL95_05905"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR38430.1"
                     /translation="MVEISDDGTGIAEEHLGRIFERFYRTDMARSRKIGGSGLGLAIC
                     KHIIEAHGQTIHVRSKLDVGTTVGFTLEGRKEV"
     gene            complement(2464..3249)
                     /locus_tag="VLL95_05910"
     CDS             complement(2464..3249)
                     /locus_tag="VLL95_05910"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSR38431.1"
                     /translation="MLNTKNFSPKQLSLFTAVVLGIPVVIGAYVLHPEWHVVAISAVV
                     FVAGSYALILAVLQRFIYRKIKLIYKFIYQTKASKKEEMYYKYILPQKGIDDVREDVE
                     RWAMQREGEIELLRSNEKYRKEFLQNLAHELKTPIFAIQGYLDTLIDDGVDDPAILQK
                     FLEKANRNVSRLVNLTNDLDEISKLESGEIPLHKENFVIQDLIREVYESLHIKSLEKN
                     IRCQFKKGTEVGITVFADKEKVRQVLINLVDNALKYSHDNGSI"
     gene            complement(3338..4018)
                     /locus_tag="VLL95_05915"
     CDS             complement(3338..4018)
                     /locus_tag="VLL95_05915"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR38432.1"
                     /translation="MDTKGTILIADDENDILEIIGYNLNREGYQVIEARDGNQALDLA
                     RKHQPDLIILDVMMPFKSGIEVCDILRKQPEFKDTMIVMLTALSDEGSHIKGLDSGAD
                     DYISKPISPKVLVSRVNALFRRVQKDSNQKVITLGEMTIDPVRYLVTLNGQEIVLAKK
                     EFELLYLLASKPGRVFLRNEILSTIWGTDVIVGDRTIDVHIRKIRQKLDVDCITTVKG
                     VGYKFEWL"
     gene            4169..>5910
                     /locus_tag="VLL95_05920"
     CDS             4169..>5910
                     /locus_tag="VLL95_05920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38433.1"
                     /translation="MVTRLHILLLSSVFFISGALLAQPEKFQPEFTRQLFHERLDKAQ
                     QDLMAMDGKSDGKISVYSSEEMNQQLEYLITTKIDAFQRRTETSTKLEHGQKLTYLRG
                     MTELLYAFAAELRKKQLDWSHFGDLVNAYETALMRMENKQSLLPIVKPLPYDAAKLIA
                     GNFAFRESAGIVELNEALFLKYIELYPEKTLRRLVENPNYRFTDSLIAVSARRRPEEL
                     VTYAQARGTQLAAKIAAHPDPLVKMIYELANDKSGQLYFPFIDHLVRGDLSKADIQRA
                     VRDSSQYYSLLVKTAVANAGRMLQGDTPVVTRSLTEMLHVKSLEVYVNTINGLHDEPA
                     SIRFRKIQGLNAQELYYLIVLNEAEIYTSSYMYVYNRMMELTPGNSADTLLQLVNYDH
                     FKKFLTMAANYNTLNDFLARMSKQQATLLMTSYVNNLDKGRSKDDIEDAVDVANAYAS
                     IRQPEIRKLMLDQVKKNYNEALAWNNKKGTIVYRLEKVIMESSDAQLDTTLAVVNISD
                     SLGIPPVFEIKNQQLRDEQGRIVLQMYFYGDASGKGTFNHLLRLYGDRTKWAMKATPQ
                     WVQFTSIGSPVPFV"
BASE COUNT         1407 a         1445 c         1455 g         1603 t
ORIGIN      
        1 aggcagcggt acccaaatca acaatgtaca ggtttcttat ggcaacgatg atgcttacga
       61 gtttttcggt ggaacagtaa acgccaaaaa cctgatctct tttgctgcag ccgatgacga
      121 ctacgatttt gactttggtt atgtgggccg catccaattt gctgtggctt tgcgtgatcc
      181 caacttcgtg gatgcaggcg atgccggtaa tggcgtggag tgtgacaacg atggcagcgg
      241 ttcgaatgcc ttgccttaca cccgtcctgt tttgtccaat ttcacttggg taggacccaa
      301 taaccaacct gccagcaatg gtactgtgtt gaccaaccac aacttcaaca tgcgttggag
      361 aagggctaca tcgttctcgg tacacaactc tatcctgatg gggtacaaca ggggaggttt
      421 ctccattgag tctgacacta ctgccaatgg ctataagctg aacacccgtt ctgctttccg
      481 caacaacctg gtgcatgccg tcgcttccgc tttccgtacc tcagctacca cgttgcttac
      541 aggtgctgaa atggaagcca aagccctggc agaaggaaac accaagcatg gcagccccga
      601 tgaaattggt ttgactgatc ctttcaaact gaccgctccc aatttccttc ccaaggcagg
      661 aagcccggcg ctgagcggag ctgtttttac cggcagcgat ttcagtggag tatccttctg
      721 gacccaagtg gcctatcgtg gtgcctttgg tgccgacaac tggatggcca actggaccag
      781 cttcacaccc cagaccaatg tatactaatt cttagatcac aacaggctgc acagggcagt
      841 ctgttgtgtt ttatacgcag gagaaaaaat tcatgttgtt gatcaggttt tttgggggca
      901 ctgtcttttt ttcattgctg ctctttggat gtggcaatcc ccaaacaggt gagagaagca
      961 gttctgccgt gaatgccgat tcggtaatgc ttataaccac cggcattgac ctggcacctg
     1021 cattggctga aaccgacagt gtggccattt tattttacaa ggacccattt ggtggggaac
     1081 ccgaccggta cactcgttac tacacgcaat tcaatactgc aaccgatagc gtgatcaggg
     1141 ttttgaaaac gaacctggct gatacctacc aggaggatac gctgcgtcaa tgccgcagtg
     1201 agggtaaaat attctgtttt gtaaagggaa aacctgtgca gaccatatac ttcacacacc
     1261 aaagcgaagc ctgttttcat ttgtacttca tacacacggg tcgctattac tatttgccat
     1321 tcgataaaag cctggaaaca agattgcggc aattgaaaca ggaagcgtgg gaaccttaat
     1381 gttctgatag cattctgttc atattggcat aatacataac tggtttcttc acttcattac
     1441 tgctattctt cacagcaata cgtagagtag attttctcaa cccgccccgg tttctaccgc
     1501 aggcggtttt ttttgtgtat gtaaatcttc acatgcacat ttgctaccat gcaggcagat
     1561 ggtttcagga aaagactggg gaatgctggt ccgtttatga tggtcatggt attgctgtgg
     1621 gtgcttgccc tggcatggct gttgctacag ggcagggaag ctgctttttt gaaattgagg
     1681 cctgctgacg attttgccac tgatttgttt tttcaataca tcacgcatgt tggtgacggc
     1741 ctgtttgccg tggctgcggt cctggtgttg ttgttgatgc ggcagtttgg ttttgcgttc
     1801 gttgcttttt tcgggtatgc tgtttccggc ctgctggccc agttgctgaa gcgattgata
     1861 agtgaatggc gacctgctcc ctattttcag cagcgtggca tttccattca tgccgtggat
     1921 ggcgtggacc tgttgcagag tgccaccagt tttccatcgg gacacacggc aagtgcattt
     1981 tcgttggcgg cggcattggt gctgatgagc cgttggtggc agcagcggtg gatgctggcc
     2041 gtgctcctgg cctgtactgc tggttacagc cgtgtttacc tcggccagca ttttctgcaa
     2101 gacgttttag cgggttcctt tttgggagtg atttcatcgg tggctggcgc atgggtgctt
     2161 gaaaagtggc agcctcgatt ttaccggaag cagtagttac acttccttgc gcccctccag
     2221 cgtaaatccg acggtagtgc ctacatccag tttgctgcgt acatgtatgg tttggccatg
     2281 tgcttctatg atgtgcttgc aaatggcaag gcccaaacca cttccgccaa tttttcgact
     2341 acgggccata tcagtgcggt aaaagcgttc aaatatccgg cccaggtgtt cctcggcaat
     2401 tcctgtgcca tcatcgctta tttcaaccag tacccgttta ccatcagtat tgtatacgct
     2461 ggcttaaatg ctcccattgt cgtggctgta tttcagggca ttgtccacca ggttgatgag
     2521 tacctgtcgc actttttctt tgtccgcgaa aacagtgatg cccacttctg tgcctttttt
     2581 gaactggcag cgtatgtttt tttccaaaga tttgatgtgc aggctttcgt acacttcgcg
     2641 aatcaggtcc tggatcacga aattctcttt gtgcaaagga atttcaccac tttccagttt
     2701 ggatatctca tccaggtcat tggtcaggtt taccagcctg ctcacattcc ggttggcttt
     2761 ttccaggaat ttctgcagga tggcagggtc atccacaccg tcatcgatca gtgtgtcgag
     2821 gtatccctgt atagcgaaga tgggcgtctt cagttcgtgt gccaggttct gcaggaattc
     2881 tttgcggtat ttctcattgc tgcgcagcaa ttcaatttcg ccttcgcgtt gcatcgccca
     2941 tctttccacg tcctctctta catcatcaat gcctttttgg ggcaggatgt acttgtaata
     3001 catctcttct tttttactgg ctttggtttg atagatgaat ttgtagatga gtttgatctt
     3061 tcgataaatg aagcgttgca gcactgccag gatcagggca taactgcctg ctacaaagac
     3121 aacggcactg attgccacca catgccattc cggatgcagt acataggcgc caatgaccac
     3181 gggtatgccc agcaccactg ctgtaaacaa ggaaagttgc ttgggcgaaa aatttttagt
     3241 gttcagcatt agttgcggac atatgaacta tgctggtaaa tttaggggct ttgagggcca
     3301 cacaggttgc aacagttgta cacaactgtg cccacagtca gagccactca aatttgtagc
     3361 ctacgccttt tacggtggtg atgcaatcca catccagttt ttggcggatc ttcctgatgt
     3421 gtacgtcaat ggtgcggtcg cctacaatta catctgtacc ccaaatggtg ctgaggatct
     3481 cattgcgcaa aaacaccctg cccggtttgg aagccagcag gtaaagcagc tcgaattctt
     3541 ttttggcgag cacaatttcc tgcccattca gtgttaccag gtaccgcaca gggtctatgg
     3601 tcatttctcc cagtgttatt actttctggt tgctgtcttt ttgcaccctt ctgaacaggg
     3661 cattcacccg gctcaccaat accttggggc tgatgggttt gctgatgtag tcatcggcgc
     3721 cgctgtccag ccccttgatg tgtgaaccct catcgctaag ggcggtgagc ataactatca
     3781 tggtatcctt gaactcaggc tgcttgcgca gtatgtcgca tacttctatc cctgatttaa
     3841 aaggcatcat gacatcgagg atgatcaggt cgggctgatg ctttcgggcc aggtccaacg
     3901 cctggttgcc atcccgggcc tcaatcacct ggtatccctc gcggttcagg ttgtagccga
     3961 ttatctcgag tatgtcgttt tcgtcatcgg ctatcagtat ggtgcccttc gtgtccatta
     4021 acaatatgtt tacgcaaaaa taacaggtgc catggcagcc ctaaggtaaa tgggtgttta
     4081 ccaaattgtt aacgatatgt tcgagttttt atacatcaat gctcgcatgg cggtagcaca
     4141 ggccatatcc ttataacttt acacccgcat ggttacacgt ctccacatct tgttgctttc
     4201 atcggttttt ttcatttccg gcgccttgct ggcccagcct gaaaaatttc agcctgagtt
     4261 tacaagacag ttgtttcatg aacgattgga caaagcacag caggacctga tggcgatgga
     4321 tggaaaaagc gatggtaaaa tttcagtgta cagcagcgag gaaatgaacc agcaactgga
     4381 atacctgatc actaccaaga tagatgcctt ccagcgccgc accgaaacca gcacgaaact
     4441 cgaacacggg caaaagctta cttacctgcg ggggatgacg gaattgctgt atgcctttgc
     4501 cgcggaattg cgcaaaaagc aactggactg gagccacttc ggtgacctgg tgaatgctta
     4561 tgaaacggcc ttgatgcgaa tggaaaacaa acagtcgctg ctgcccatag tgaagccgtt
     4621 gccgtatgat gccgccaaat tgatcgcagg caattttgct tttcgcgaat ctgcgggcat
     4681 tgttgaactc aatgaagccc tcttcctgaa atacattgag ctgtaccccg aaaaaacgtt
     4741 gcgacgcctg gtggagaatc ccaactatcg cttcaccgac agtttgattg cggtttctgc
     4801 aaggcgccgt cccgaagaat tggtaaccta cgcacaggca agaggtacac aactggcagc
     4861 caaaattgcc gcccaccccg atccgttggt caagatgatc tatgaactgg ccaacgacaa
     4921 gtcaggccaa ttgtatttcc cctttataga ccacctggta cgtggcgacc tgtcaaaggc
     4981 cgacattcaa agagcggtaa gagactcaag ccagtactac agtttgctgg tgaaaaccgc
     5041 ggttgccaac gcaggtcgca tgctgcaggg cgatacacct gtagttaccc gcagcctcac
     5101 cgaaatgctt cacgtaaaat cgctggaagt atatgtaaac acgatcaatg gtttgcacga
     5161 tgaaccggcc tccatacgct ttcgcaaaat acaaggcctc aatgcccagg aattgtatta
     5221 cctcatcgtg ctgaatgaag cggagatata caccagcagc tatatgtatg tatacaaccg
     5281 catgatggaa ctgacaccgg gcaatagtgc ggatacgttg ttgcaattgg tgaactacga
     5341 ccatttcaag aagttcctga ccatggcggc caattacaat acgctgaatg atttcctggc
     5401 cagaatgagc aagcaacagg ccaccttgct gatgaccagt tatgtgaaca acctggacaa
     5461 gggcaggagc aaagatgata ttgaggatgc cgtagatgtg gcaaatgctt atgcaagcat
     5521 ccggcagcct gaaataagaa agctgatgct tgaccaggtg aaaaagaatt acaacgaagc
     5581 ccttgcctgg aacaacaaaa aaggcaccat tgtatatcgc ctggaaaaag tgatcatgga
     5641 aagcagcgat gcgcaactgg acacaaccct ggcggtggtc aatatttcag attcattggg
     5701 cataccgcct gtttttgaaa tcaagaacca gcaactgcgt gatgagcagg gtcgcatcgt
     5761 gttgcagatg tatttctatg gcgacgccag tggtaaaggc acattcaatc atttgctgcg
     5821 cctgtatggc gaccgcacca aatgggccat gaaagccaca ccgcaatggg tacagttcac
     5881 cagcattgga tcgccggtgc ccttcgtttt
//
LOCUS       DATIQF010000354         2517 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_203532,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000354 DATIQF010000000
VERSION     DATIQF010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2517
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203532"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..271
                     /locus_tag="VLL95_05925"
     CDS             <1..271
                     /locus_tag="VLL95_05925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38434.1"
                     /translation="DAQAAYNIKNQKTIRDWLEKYKSEKVEFCTTTQPYMGKTKKTAA
                     KVSNEDLQKALREAELKLKALNTLIDVAEEQLKIDIRKKSGARQS"
     gene            274..1176
                     /locus_tag="VLL95_05930"
     CDS             274..1176
                     /locus_tag="VLL95_05930"
                     /inference="COORDINATES: protein motif:HMM:NF033516.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HSR38435.1"
                     /translation="MKEDYPSAGIATLCRLFGKTRHAYYDAIWRKENNLVKEDIILQE
                     VISVRKELPSLGTRKLHHVLQARLASHNISIGRDYLFDLLAEHRLLIRCRKRKVITTD
                     SRHWMHKYCNLIKNIPVTRPEQVWVSDITYIKIINQWGYLSLITDAYSRKIMGYSLQN
                     TLTAEGCLAALRMALDNRLSNEQLIHHSDRGSQYCSQQYVKLLLENNIAISMTENGDP
                     YENALAERMNGILKSEFNLHNTQLGFEQTRNLISKSINAYNKLRPHASCDYLTPEEAH
                     LKSGTMNKRWKTYNQTYGYQEVLV"
     gene            1595..>2517
                     /locus_tag="VLL95_05935"
     CDS             1595..>2517
                     /locus_tag="VLL95_05935"
                     /inference="COORDINATES: protein motif:HMM:NF022588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2911 domain-containing protein"
                     /protein_id="HSR38436.1"
                     /translation="MNARSFTLLLMAAVIAVQASGQALRIPQNTNISSMAGRRVGVTD
                     IQVHYNSPGVKGREGKIYGTDIVPYGYTVLGFGSNVASPWRAGADECTVMSFSTDVSI
                     NGRSLPAGKYAFFIAVYPDSSVLIFNKNTDAWGSYFYRQELDVMRVTTRQQKNQPVMQ
                     ERLVYNFSNQTDRSVQINLEWERWSFPILVEVDLKKTVLEDIRRQMSGAIGFDPASLE
                     AAAQWCVANDTNYEEALNWINSATNPQLGGRTSFAALSTHSRILQKLGKDKEATDMMN
                     KAIENASATELHGYGRQLLSEKKLPEALAIF"
BASE COUNT          775 a          622 c          564 g          556 t
ORIGIN      
        1 agatgctcag gcagcttata acatcaagaa ccaaaaaacg attcgggact ggttggaaaa
       61 atataaatcg gaaaaagtag agttttgcac aacaactcag ccatacatgg gtaaaaccaa
      121 aaagacagcg gccaaagtat ccaatgaaga tttacaaaag gcattaaggg aagcggaact
      181 taaactgaag gcgctgaata cattaattga tgtagcagaa gaacaattaa aaattgatat
      241 cagaaaaaag tctggtgcca ggcagtcata aaaatgaaag aagactatcc ctctgcaggt
      301 atagctactc tgtgcagact gtttggcaaa acaaggcacg cttattacga tgccatatgg
      361 cgtaaggaaa ataacctggt taaggaagat atcattcttc aggaggtgat cagtgttcgc
      421 aaagaattac cctcattagg tacccgcaaa ctgcatcacg tattgcaggc caggcttgcc
      481 tctcacaaca tcagtatagg cagggattat ctgtttgatt tgcttgccga acacaggctg
      541 ttgatcaggt gcagaaaaag aaaggtgatc acaaccgact cccgccattg gatgcacaaa
      601 tactgcaatc ttattaaaaa catccctgtt acccggcctg agcaggtatg ggtaagcgat
      661 attacttaca taaaaatcat taatcaatgg ggctatttaa gcctcattac agacgcttac
      721 tcaagaaaga tcatggggta tagcttgcaa aacactctga ctgctgaagg ctgtctggca
      781 gcccttagaa tggcattgga caatcgactt tctaatgaac aactgatcca tcattcagac
      841 agaggttccc aatactgttc acaacaatat gtaaaactgc tgcttgaaaa caatatagcc
      901 atcagcatga cagaaaacgg agatccttat gaaaacgcat tggcagaacg aatgaatgga
      961 atattgaaat cagaattcaa tcttcataat acccaactgg gctttgaaca aacaaggaac
     1021 ctgataagca aaagcatcaa tgcatataat aagctaagac ctcatgccag ctgcgattat
     1081 ttgaccccgg aagaagcaca cttaaaatca ggaacaatga ataagagatg gaaaacctat
     1141 aaccaaactt atggctacca ggaagtgctt gtatagcaat tgcaggacta aaaattatat
     1201 ttgtataacc caatcaggat ttatttcata acctgtatag ctattttagg acgagtcaag
     1261 gacgagtcag gtagccggat gaagtatgga tactccctat caaagcccta catagtgcct
     1321 gaggagtggc acttatccac atttttcctt tccagccccc ctctcacaag ttgatggggc
     1381 acaggcataa tcccttgctt tggtgcagac aactggctgc gaaaaaatgg caacttctca
     1441 tatctgcgca aatccgagaa atcggcggga aaaaaagacc cttcatccag ggcatcatca
     1501 tttaccacca ccgctggtag cccgcatgct ccttttacac caaagacgcc tgtattcggc
     1561 gctttgcttt tttctttgat acaaattcag caccatgaac gcccgatcat tcaccctgct
     1621 gctgatggca gccgtcattg ccgtgcaggc ctccggccag gccctgcgca ttccgcaaaa
     1681 caccaatatc agcagtatgg ccggccgccg ggtaggcgtt accgatatac aggttcacta
     1741 caacagcccc ggcgtaaaag gccgcgaagg aaagatctat ggcaccgaca ttgtgcctta
     1801 tggctacacc gtgctcggct ttggctccaa cgtggcatcg ccatggcggg ccggcgccga
     1861 tgaatgcacc gtcatgtctt tctctaccga tgtcagcatc aatggccgat cgctgcctgc
     1921 cggtaagtat gccttcttca ttgcggtata ccccgacagc agcgtactca tcttcaacaa
     1981 gaacaccgat gcctggggca gctatttcta ccgccaggaa ctggatgtaa tgcgggtgac
     2041 gacacggcag cagaaaaacc agcccgtgat gcaggaaagg ctcgtataca atttcagcaa
     2101 ccagacagat cgttcggtcc aaatcaacct cgaatgggaa cgctggagct tccccatcct
     2161 ggttgaagtt gacttgaaga aaacggtact ggaagatatc cggcgccaga tgagcggcgc
     2221 cattggcttc gatcccgcca gcctggaagc cgccgcacag tggtgcgtgg ccaacgacac
     2281 caactacgag gaagccttga actggatcaa ttcagctacc aatccgcagt tgggcggcag
     2341 gaccagcttt gcggcactct ccacccattc ccgcatcctg caaaagcttg gcaaagacaa
     2401 agaagccacc gacatgatga acaaggccat tgaaaatgcc agtgccacag aactgcatgg
     2461 ctatggccgc cagttgctga gcgaaaagaa actgccagaa gccctcgcca ttttcca
//
LOCUS       DATIQF010000355         3096 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_21077, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000355 DATIQF010000000
VERSION     DATIQF010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3096
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21077"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..580
                     /locus_tag="VLL95_05940"
     CDS             <1..580
                     /locus_tag="VLL95_05940"
                     /inference="COORDINATES: protein motif:HMM:NF015747.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HSR38437.1"
                     /translation="ALATKWAHNGHRIFLGVNDITQFKGKDLLQNPNTTVHPIAEAVQ
                     QAEVILLATPAPAAVAVAQSLGDTSGKIIIDAMNIVMGRGPQGFANTADAILANTATR
                     DVVKCFNTTGFNNMQNTMYGDMAIDLFVAGDSAPGKAAAIQLAKDAGFAECYNVGGND
                     KFSLMEQFAFFWINLAMMQGQGRDIAFKLLKR"
     gene            599..1534
                     /locus_tag="VLL95_05945"
     CDS             599..1534
                     /locus_tag="VLL95_05945"
                     /inference="COORDINATES: protein motif:HMM:NF013246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005254 - chloride channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bestrophin family ion channel"
                     /protein_id="HSR38438.1"
                     /translation="MILKRTFNPLAVARYMRMELTVSVVLSAGVYYLYHARHVEQVTL
                     PFSVAAIMGSALAIFLAFRNNNSYARWWEARTLWGGIINSSRIFARQLIANSDNAAQT
                     GKASAEQVQAYQKEMIDRQIAFAHALCLQLRQQNHYDEFRHLLSEKEYAEMTQKQNPA
                     NHLLLWQGKRIKEGMKTELLGAFDNISLEPTLASFNNFQGSCERIKNTPLLRQYHFFT
                     RLFLLVFMGVLPFSLMGDFSKMGVPALMIPVSILVSFVFGVMGKVGEVNEDPFENKIT
                     DLPLTALCNTIERDLKEMLGETMPEKLMPQQGYLM"
     gene            1540..2142
                     /locus_tag="VLL95_05950"
     CDS             1540..2142
                     /locus_tag="VLL95_05950"
                     /inference="COORDINATES: protein motif:HMM:NF018446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022841 - potassium ion leak channel
                     activity [Evidence IEA];
                     GO_process: GO:0071805 - potassium ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HSR38439.1"
                     /translation="MSKLVPTNRIEAFSDGVIAIIITIMVFDLKLPEGNEHISMWMAL
                     RPLLPKLLSYTLSFLVLAIMWVNHHQIFHQVHQTDRPLLWHNIHLLFWMSLIPFATNT
                     IGNRPLQPESTLLYGIVFFMCAYAFTLLRSYLLKTGLLHQTISKAAQQKIIRKNRLAF
                     SIYLSAAILGYVSVYISFLLFLVVPAMYFMPEAIVHETRD"
     gene            2240..2650
                     /locus_tag="VLL95_05955"
     CDS             2240..2650
                     /locus_tag="VLL95_05955"
                     /EC_number="1.11.1.29"
                     /inference="COORDINATES: protein motif:HMM:TIGR03562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA];
                     GO_process: GO:0006972 - hyperosmotic response [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0033194 - response to hydroperoxide
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HSR38440.1"
                     /translation="MKRHATAVWNGSGKEGNGHLTTQSTVLNQTQYSFNSRFAEGVGT
                     NPEELVAAAHAGCFAMKLSFIIGEMGFTPESLDAHCEVTFADGKIASSHLVVKGKVPG
                     ATAEQFAEAVKNAELNCPISKSLNVAISSEAILL"
     gene            complement(2711..>3096)
                     /locus_tag="VLL95_05960"
     CDS             complement(2711..>3096)
                     /locus_tag="VLL95_05960"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSR38441.1"
                     /translation="LQQMYGSQAAFISAGGYHHHIGLNTWYSKGAGPAPVRSAGLFHT
                     AILYPERKDLAIALQRLLDAKYPLTGASDHGVSEAIYLDDPDGNGVELYWDKPQEQWP
                     KNPDGTLEMYTRSLDLDALLAEAAK"
BASE COUNT          747 a          886 c          768 g          695 t
ORIGIN      
        1 cgccctggcc accaaatggg cgcacaacgg ccatcgcatt tttctaggtg tcaacgacat
       61 cacccaattc aaagggaaag acttactgca aaatcccaac acaacggtgc atcctattgc
      121 cgaagctgtg caacaggctg aagtgatact gctcgccacg ccagcaccgg ctgcagtggc
      181 cgtagcgcaa tcgctgggcg ataccagcgg caagatcatc atcgatgcca tgaacattgt
      241 gatggggcgt ggtccgcagg gctttgccaa caccgccgat gccatcctgg ccaacaccgc
      301 tacccgcgat gtggtcaaat gcttcaatac caccggcttc aacaacatgc aaaacacgat
      361 gtatggggat atggccatcg acctgtttgt agccggcgac agcgcccccg ggaaagccgc
      421 tgccatacaa ctggccaaag acgccggttt tgccgaatgc tacaatgtgg gtggcaacga
      481 caagttcagc ctcatggaac aatttgcctt cttctggatc aacctcgcca tgatgcaggg
      541 gcagggcaga gacattgcct tcaaactcct gaaaagataa aacccctccc gctgtcttat
      601 gatcctgaaa agaacattca acccgctggc cgtagcccgc tacatgcgca tggagctcac
      661 ggtgtctgta gtgctttcgg caggggttta ttacctctac catgcccggc atgtggagca
      721 ggtcaccctg cccttttcag tagccgccat catgggcagt gcactggcca tcttcctggc
      781 ttttcgaaac aacaacagct atgcccgctg gtgggaagcc cgtacgcttt ggggcggcat
      841 catcaacagc agccgcattt ttgcccggca gcttattgcc aatagtgaca acgccgccca
      901 aaccggcaaa gccagtgccg aacaagtgca ggcctaccaa aaagaaatga tcgaccggca
      961 gatcgctttt gcccatgcct tgtgcctgca gctgcgacag caaaaccatt acgatgaatt
     1021 ccggcattta ctcagcgaga aagagtatgc ggagatgacc caaaaacaaa accccgccaa
     1081 ccacctgttg ttgtggcagg gcaagcgcat caaagaaggc atgaaaacag aattgctcgg
     1141 tgctttcgac aacatcagcc tcgaacccac attggcctcg ttcaacaatt tccagggcag
     1201 ttgcgaacgc atcaagaaca cgccgttgtt gcgccagtac cattttttca cccgcctctt
     1261 cctgcttgtg ttcatggggg tgctgccctt ttcgctcatg ggcgatttca gcaaaatggg
     1321 cgtgcctgca ctcatgatcc cggtaagtat cctcgtatct ttcgtattcg gcgtgatggg
     1381 caaagtgggc gaagtgaatg aagatccgtt tgagaacaag atcaccgacc tgccactcac
     1441 cgctctttgc aataccattg aaagagacct gaaagaaatg ctgggcgaaa ccatgccgga
     1501 aaaactaatg ccccaacaag gctacctgat gtaaatacta tgagcaaact ggtacctacc
     1561 aaccgcattg aagctttcag cgatggcgtc atcgccatca tcatcaccat catggtgttt
     1621 gacctgaagc tgcccgaagg caacgaacat atttccatgt ggatggccct gcggccattg
     1681 ctgcccaagt tgttgtcgta cacgctcagt ttcctggtgc tcgccatcat gtgggtgaat
     1741 caccaccaga tctttcacca ggtacatcaa accgaccggc ccctgctctg gcacaatatt
     1801 cacctgttgt tctggatgag cctcatcccc tttgccacca ataccattgg caaccgcccc
     1861 ctgcaacccg aatcgaccct gctgtatggc atcgtctttt ttatgtgtgc ctatgccttt
     1921 accctgctgc gcagttacct gctcaaaacc ggcctgctgc accaaaccat cagcaaagcg
     1981 gcgcagcaaa agatcattcg caaaaacagg ctcgcttttt ccatttacct cagtgccgcc
     2041 attctggggt atgtatcggt atacatttcg ttcctgctct tcctggtagt gccggccatg
     2101 tactttatgc cggaggccat tgtacacgaa accagggatt aaggacgggc cggcccaacg
     2161 gcttgcgaaa agcgaaaaga aaaaaggcca cttaggcaac tgtttgtaat ttggcccccc
     2221 aataaaaaaa ctgatcatta tgaaaagaca cgccactgcc gtttggaatg gttcgggcaa
     2281 ggagggcaac ggccacctga ccacgcaaag caccgtgctc aatcaaacgc aatattcatt
     2341 caacagccgt tttgccgaag gggtaggcac caaccccgaa gaactggtag ccgctgcgca
     2401 tgccggttgt tttgccatga agctcagctt catcattggc gaaatgggct tcacgcctga
     2461 gtcgcttgat gcgcattgcg aagtcacttt tgccgatggc aaaatagcca gcagccacct
     2521 ggtggtaaaa ggcaaagtac ccggcgccac tgccgagcag tttgccgaag cggtgaagaa
     2581 tgccgaactg aattgcccca tttcaaaatc attgaatgtg gccatcagct ctgaagccat
     2641 cctgctgtaa ttcttccgtt actattattt tgtttttgtt gaaagcggct catctcaggt
     2701 gagccgcttt ttattttgcc gcttccgcca gcagcgcatc caggtccagc gaacgggtgt
     2761 acatttccaa agtgccgtcg gggtttttag gccattgttc ctgcggcttg tcccaataca
     2821 gttccacgcc attgccatcg gggtcatcca ggtaaatggc ttcgcttacg ccatggtcgc
     2881 tggcgccggt gaggggatat ttcgcgtcga gcaatcgctg caaggcaatg gccaggtctt
     2941 tgcgctccgg gtacaggatg gccgtatgaa acaggccggc actgcgtacc ggggccgggc
     3001 cagcgccttt gctgtaccag gtgttgagac caatgtggtg atggtagcca ccggccgaaa
     3061 tgaaagcggc ctggctaccg tacatctgtt gcaatt
//
LOCUS       DATIQF010000356         1543 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_21083, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000356 DATIQF010000000
VERSION     DATIQF010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21083"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(305..1096)
                     /locus_tag="VLL95_05965"
     CDS             complement(305..1096)
                     /locus_tag="VLL95_05965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38442.1"
                     /translation="MKKIFISTWGMFFALAPVWGQNVGIGTSTPSTKLDVNGSVSTNT
                     NIYAAGNIGVGFFPNETLTYKLTVKNGSFAIYDPNDDMYWRMNYDAFGNRFQVSTVIA
                     GSTVQRMVVTNSGNVGINNISPLYRLDIGGNLRASGDIKTEASLYVSGNAYVDDNKGL
                     VRASTADLGNMKIHKANYTVTAILGAHAASGEFTIAWPAGIFSIAPSVYACNETYTFG
                     TVGELRRVIVKIYDCDTDSCKARLINTDSGAVNYEIRFDVVMIGR"
BASE COUNT          470 a          350 c          307 g          416 t
ORIGIN      
        1 tcctttcata gccccattaa tcatcagtag ataatttccc gctgatctcg cagattattt
       61 gcgcagatca cgcagaaaac tatgctttca atcagcgaaa tctgcggacc cgaaatccgg
      121 gtatctgtgg gagatcatta ccaaacatgg tcaaatagcc acaggcatta actcaatatc
      181 taatagtgaa ggggctggca ttaaaggcag gaaggtggta ttgcccggca ccgattaaat
      241 cttcgtgaag gataataagc gcatatgcca acaacaaaac ctacacatca aaaagaaaat
      301 aactctacct gccaatcatg acaacatcaa atctaatttc ataattaacg gcgcctgaat
      361 ctgtgttgat aagtctcgct ttacagctat ccgtatcgca atcataaatt ttcacaatta
      421 ccctgcgcaa ttcacctacc gttccaaagg tgtaagtttc gttgcaggcg tacacagaag
      481 gggcaatcga gaatattcct gcaggccatg caatggtgaa ttcaccagag gcagcatgag
      541 ctcctaaaat ggcggtaact gtataattgg ctttgtggat tttcatgttt cctaaatcgg
      601 cagtagaagc ccttaccaac cctttattgt cgtcaacata ggcattcccc gaaacataca
      661 aactcgcttc agtttttata tccccgcttg ccctcaggtt gcctccaata tcaagtctgt
      721 atagcggcga aatattgtta atccccacat taccggaatt ggtaaccacc attctttgta
      781 cagttgatcc tgctattacg gtgcttacct ggaaacgatt gccaaaagca tcgtaattca
      841 ttcgccaata catatcatcg ttgggatcat aaatggcaaa gcttccgttt tttacagtca
      901 acttataggt tagggtttca tttggaaaaa atccaacgcc gatatttcct gccgcataaa
      961 tattagtatt ggttgaaaca gacccgttca catccagttt ggtggagggc gtactggtac
     1021 cgatgccaac attttgcccc caaaccgggg ccagggcaaa aaacataccc caggttgaaa
     1081 taaaaatctt tttcatgctt agttttatgg ttttgagtgt ttagtgacta ctgagtgtta
     1141 catggttaaa tgccggacgc caaccagaaa tggtgaagtg gtgcctctca acccgcacac
     1201 aaaaaatgtt tccgacaaat aacggcctca cttaaacctt aaaaaggaga gtattttgaa
     1261 acttcatcaa attggcgcag aaagataata aaattccata ccacaccaag gagtccagga
     1321 taaatgggaa aaactaactg ccttttcgga atgtgaactt aagctgccaa tagaaacagg
     1381 tctaagcgat caagtttttg cagaaggttg agcaactact ctgagtagaa aaactggtcg
     1441 ccatggaatg tggtaaaaat tacaccatcg gcctcccatt tcctttcttc ctttggcgaa
     1501 tggcaatatg gacgatgtac gcttcgtggc aatgggtgct cat
//
LOCUS       DATIQF010000357         2026 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_188286,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000357 DATIQF010000000
VERSION     DATIQF010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2026
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188286"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..304
                     /locus_tag="VLL95_05970"
     CDS             <1..304
                     /locus_tag="VLL95_05970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38443.1"
                     /translation="YQPDRNATSMRQALIANIREEYDHNVTQQLYVEPEIWDAVTRMK
                     DQNIFIINQVGAVLPAEATALDLNKQLLQLINTDENTTMNKVVLQALQFETKKLVG"
     gene            321..1886
                     /locus_tag="VLL95_05975"
     CDS             321..1886
                     /locus_tag="VLL95_05975"
                     /inference="COORDINATES: protein motif:HMM:TIGR00641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HSR38444.1"
                     /translation="MSETKKLTTDSGIDISVVYDAQTPGATPSLEQPGSFPFTRGVQP
                     DMYRGRLWTMRQYAGFSTAEESNKRYHYLLSQGVMGLSVAFDLPTQIGYDSDHPLAEG
                     EVGKVGVAIDSMEDMQTLFKGIKLQDVSTSMTINATGFILLSFYVALAKQQGADLKQI
                     SGTIQNDILKEYAARGTYIYPPKPSMRIITDIFEWCSKELPKWNTISISGYHIREAGS
                     TAVQEIAFTLSNGKAYVKAALEKGLDINVFGKRLSFFFNAHNNLFEEVAKFRAARRMW
                     AQIMKDLGATDPKAMMLRFHTQTGGSTLTAQQPLNNIARVTVQTMAAVLGGTQSLHTN
                     GYDEALSLPTEEAARIALRTQQIVAFESGAADTVDPLAGSYYVEALTAEVEAKAWELI
                     NKMDAMGGSVTAIEEGFMQEEIARSAYAYQRQIEDGSKIIVGVNKFQVAEENHPPLLK
                     IDDSIRRIQSEKLAAWRANRDNNMASKSLSIIEAAAKDGTNLMPLVIEAVENKCTLGE
                     ISDALRKVYGEYK"
BASE COUNT          578 a          533 c          522 g          393 t
ORIGIN      
        1 gtaccaaccc gacaggaatg ccaccagcat gcgccaggca ctcattgcca acatccgcga
       61 ggagtacgac cacaacgtga cgcagcagct ctacgtagag cccgagatct gggacgcggt
      121 cacccggatg aaagaccaga acatcttcat cattaaccag gtgggcgctg tattgcctgc
      181 agaagcaacg gcactggatc ttaataagca attgctgcaa ctcatcaata ccgacgaaaa
      241 caccaccatg aacaaagtag tgttgcaagc cttgcagttt gaaaccaaaa aactggtggg
      301 ataaccaata aacgattgct atgagcgaaa ctaaaaaact gaccaccgat agcggcatcg
      361 acatcagcgt ggtatacgac gcccaaaccc ccggtgctac tccatcgctg gagcagccgg
      421 gctccttccc cttcacccgt ggtgtacagc ccgatatgta ccggggtcgt ctctggacca
      481 tgcgccagta cgccggtttt tctacagccg aagaaagcaa caaacggtat cactacctcc
      541 tcagccaggg ggtgatgggt ctgagcgttg ccttcgattt gcccacgcaa atcgggtacg
      601 atagcgacca cccgctggca gaaggcgaag tgggcaaggt gggcgtggcc atcgatagca
      661 tggaagacat gcaaacactc ttcaaaggca tcaaactgca ggatgtgagc accagcatga
      721 ccatcaatgc caccggtttc atcctgctga gtttttacgt ggcgctggcg aagcagcaag
      781 gcgccgatct gaaacagatc agcggtacca tacagaacga tatcctgaaa gaatatgcgg
      841 caagaggcac atacatctac ccgcccaaac ccagcatgcg catcatcacc gatattttcg
      901 aatggtgcag taaagagctg cccaaatgga ataccatttc catcagtggc tatcacatcc
      961 gcgaagccgg cagcacggcg gtgcaggaaa ttgcctttac actcagcaac ggtaaagcct
     1021 atgtaaaagc tgccctggaa aaaggcctcg acatcaacgt gtttggcaaa cggctatctt
     1081 tctttttcaa tgcacacaac aacctgtttg aagaagtggc caagttccgt gcggcacgcc
     1141 gcatgtgggc acagatcatg aaagacctgg gtgccactga tcccaaggcc atgatgctgc
     1201 gctttcatac gcaaacaggc ggcagcaccc tgacagccca gcaaccactc aacaatattg
     1261 cccgggtgac ggtgcaaacc atggcggctg tattgggcgg cacccaaagc ctgcacacga
     1321 atggctatga cgaagcgctg agcctgccca ccgaagaagc ggcccgcatt gcgctgcgta
     1381 cccagcagat cgtagcgttt gaaagtggcg cagccgatac cgtcgatccg ctggctggca
     1441 gttactacgt ggaagccctg acggccgaag tggaagcaaa ggcgtgggaa ctcatcaata
     1501 aaatggatgc catgggcggc agcgttaccg ccattgaaga aggtttcatg caggaagaaa
     1561 ttgcccgcag tgcttatgcg taccaaaggc aaattgaaga tggcagcaag atcatcgtag
     1621 gtgtcaacaa attccaggtg gctgaagaga accatccgcc gctgttgaag attgatgaca
     1681 gtatccggcg tattcaaagt gagaagctgg ctgcatggcg tgccaaccga gataataaca
     1741 tggccagtaa aagcctttcc atcattgagg cagccgctaa agatggtacc aacctgatgc
     1801 cgctggtcat tgaggccgtt gagaataagt gtacactcgg cgaaatttct gacgccttga
     1861 gaaaggtgta tggtgaatac aagtgagtgt aaataagaaa tacggaacag aaaataagaa
     1921 atgtaaaatc tgagaacatc gcaatgaaat catttttcaa aagaatctct tgtggaatcg
     1981 ccagcatgac gctggcgttt tccttgcagg cacaaagtcc atcctt
//
LOCUS       DATIQF010000358         2022 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_203613,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000358 DATIQF010000000
VERSION     DATIQF010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203613"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..413
                     /gene="mtgA"
                     /locus_tag="VLL95_05980"
     CDS             <1..413
                     /gene="mtgA"
                     /locus_tag="VLL95_05980"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: protein motif:HMM:TIGR02070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HSR38445.1"
                     /translation="KRKPGRVRGASTLSQQVAKNVFLWQGRSWVRKGFEVYFTFMIET
                     LYSKKRILELYLNVAEMGEGVFGVEAASQRYFGKPASKLSRAEAAKLAACLPNPKKYT
                     VKPLSGYVSRRSGWVLRQMNNLDSDPDIQQLLPR"
     gene            438..1910
                     /locus_tag="VLL95_05985"
     CDS             438..1910
                     /locus_tag="VLL95_05985"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HSR38446.1"
                     /translation="MRRRVTGWMSKWSGYCLMLFTALSCSVAKYQPNKKYSPQQLQQE
                     TDILWQTYQQVHPSYNWYKPADSIDARFRQVKQSITDSLTESEFRLRLSWAAAAIRCG
                     HTAVRPPKAASSAVGNNNKPAFPLQVRVLQNDTLVVLQNTGPLRDSVNRGVVLQAIDS
                     VPVSVLLAQMREYISVDGYHNGFSNSLISTGFATRFVWLYGLQAFYKVQYLDSAGKSL
                     QASIRPQPPRPKDSLRTAPRPPKPPTTAKPAYGFLEIDSAGRFAYLRLNSFTGNKVNG
                     FIRQSFRQLEASGIRQLILDLRGNNGGRIKKSVLLAKYLSDHPFKVADSVSAVGFQFP
                     YSRYVQSGWVYRWFGWLIASKGNDGRLHLKSMERKVYKPKTKHHFDGKLYVLTGGRTF
                     SAAVLFLNYLNHQNNLVLAGEETGGGARGNSSVLMPDIVLPYTKIRARLPLFRMVSHA
                     SLPHNGRGVIPDVIIHPTSADVVAGRDAVIQKAEMLISEN"
BASE COUNT          525 a          534 c          487 g          476 t
ORIGIN      
        1 acaaacgcaa acccggcagg gtgcgtggcg ccagcaccct cagccagcag gtggctaaaa
       61 atgtttttct atggcagggc cgcagttggg tccgcaaggg cttcgaagtg tatttcactt
      121 ttatgataga aacgctatac agcaaaaagc gcattttgga actttacctc aacgtagccg
      181 aaatgggcga aggcgtattt ggtgtggaag ccgcctctca acgatatttt ggcaaaccag
      241 catccaaact ttcccgtgcc gaagccgcca aactcgcggc ctgcctgccc aatcctaaaa
      301 agtatacggt gaaaccactg agcggctatg taagccgccg cagcggttgg gtgcttcgcc
      361 aaatgaacaa cctcgacagc gatccggaca tccaacaatt gctgccccgc taagctgccc
      421 ccgctaattt tgacaatatg aggcgcaggg taacaggatg gatgagcaaa tggagcggct
      481 attgtttgat gctattcacc gcactatcgt gcagcgtggc caaataccag ccgaacaaaa
      541 aatacagccc gcagcagctg cagcaagaga ccgatatttt gtggcaaacc tatcagcagg
      601 tgcatccgag ctataactgg tacaagcctg ccgattccat tgacgcccgg ttcaggcaag
      661 taaaacaaag cattaccgac agccttactg aatccgaatt tcgcctgcgg ctgtcgtggg
      721 cagccgccgc tatccgctgc gggcataccg ccgtgaggcc ccccaaagcc gccagttccg
      781 cagtcggcaa caacaacaaa cctgccttcc ccttgcaagt gagagtgctg caaaatgata
      841 cgctggtggt gctccaaaac accggtccat tgcgggattc cgtcaaccga ggagttgtgc
      901 tgcaggccat cgacagtgtg cctgtatcgg tattgctggc gcaaatgcgg gagtacattt
      961 cagtggatgg ctatcacaac ggcttttcca attcactcat cagtacagga ttcgccaccc
     1021 gctttgtatg gttgtacgga ctgcaagctt tctacaaagt tcaatacctc gattctgcgg
     1081 ggaaaagcct gcaagccagc attcgccccc agccacccag gcctaaagac agtttacgca
     1141 ctgctccccg gccgccaaag ccgccaacaa cagcaaagcc tgcttacggt tttcttgaaa
     1201 tagacagtgc cggtcgcttc gcttacctgc ggctcaatag tttcacagga aataaagtca
     1261 acggtttcat tcgccaaagt tttcgccagc tggaagcaag cggcatccgg cagctcatcc
     1321 ttgacctgcg tggcaacaat ggcggccgca tcaaaaaaag tgtgttgctg gccaaatact
     1381 tatccgatca tcctttcaaa gtggctgatt cggtttcagc agtaggattc cagtttccct
     1441 attccaggta tgtacaatca ggctgggtat accgttggtt tggctggctc attgcgtcca
     1501 aaggcaatga tggcaggctg cacctgaaat cgatggagcg gaaagtgtac aagcccaaaa
     1561 caaaacacca cttcgatggc aagctgtatg tgctcaccgg cggtcgtact ttttctgcgg
     1621 cggtattgtt tctcaactac ctcaatcacc aaaataacct ggtgctggca ggcgaagaaa
     1681 ccggtggtgg tgcccgtggc aacagttctg tactgatgcc ggatattgta ttgccttata
     1741 ccaaaatcag ggcaagattg ccattgttta gaatggtttc ccatgccagc cttccacaca
     1801 atgggcgtgg agtaattcca gatgtgatca ttcatccaac ttcagccgat gtagttgcag
     1861 gtcgtgatgc tgtaattcaa aaggcagaaa tgttgatttc agaaaattaa tcttcgtcaa
     1921 actgtatttg gcattcttga ttatcgcttt tctgtttcac tatcttataa atccatacaa
     1981 taatagaaac caagtatggt ataccagtaa taatagttac ct
//
LOCUS       DATIQF010000359         6256 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_279366,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000359 DATIQF010000000
VERSION     DATIQF010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6256)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6256)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6256
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279366"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..664
                     /locus_tag="VLL95_05990"
     CDS             <1..664
                     /locus_tag="VLL95_05990"
                     /inference="COORDINATES: protein motif:HMM:NF013821.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="riboflavin kinase"
                     /protein_id="HSR38447.1"
                     /translation="QHATDYIEKFLVAKFHPATIIIGYDHRFGKNREDNYQLLEKYRG
                     PYHYQLIEIPEAVIKDNTISSTRIRKALSHGEIAEANDLLGYHYFFEGLVIQGNKLGR
                     TIGYPTANLLQSDVEKLVPGNGVYAVQVTLPSLPQFGTLNGMMNIGVRPTVDGTKRSI
                     EVNIFDFNEDIYDKPMRVQVVEHLRGEQKFDGLEALKHQLDQDEMHSRAILKTLAIQQ
                     QG"
     gene            complement(681..1661)
                     /gene="holA"
                     /locus_tag="VLL95_05995"
     CDS             complement(681..1661)
                     /gene="holA"
                     /locus_tag="VLL95_05995"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR01128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HSR38448.1"
                     /translation="MVSDKIIQEFKKGTFKPVYWLEGEEPFFIDQVVDYAEKNILNES
                     EAGFNLSVFYGRDADWTSVVNACRRYPMFAEKQVVLLKEAQYMKDIEKLEGYIENPLS
                     STILVVAYKQKKIDGRSKMAKLLKQKGEVLSTKKLFDSELPGWVQQYAKGQGFGVTHK
                     AVHLLVDHIGNDLSRLANELDKVLINLEDRREINEDDVETFVGISKEYNAFELQHALT
                     QRNMTRCLQIIQYFEGNPKALPIMQLLPTLYSFFSKAYLVFGAGTNDEYRLAQHLGYQ
                     SLNPYVKDIINCAKNYRQKGVEQALLLLHEYNLKSIGVHASNVSDANLLK"
     gene            1771..2748
                     /locus_tag="VLL95_06000"
     CDS             1771..2748
                     /locus_tag="VLL95_06000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38449.1"
                     /translation="MEEMNTGQYSTEKSPSNNKTTLIYSVLAIALLATWGYIIYDKNK
                     VKEQVTALTTQNTMVTSERDQVRELYNSSLARLDSLMGENQNMADNLANRDSEITKLR
                     AEIRKVVNNKNATASDLARARQMIKELNGKIEGLAAEVDRLQGENQQLVATNERITQE
                     KQKVETDLATTQNEKQSIQKTLDETMDVASTLKASNINIFAVNEKGSGKEKETSSAKR
                     ADKLRITFDLDPNRLAKTGEKELFIAVTAPDGKPIATTASFATREEGEKPYTSKVSVQ
                     YENGKRTPVSFDWKADKNFQSGDYKIEIYHNGFKIGEGVRSLKKGGIFG"
     gene            complement(2810..>6256)
                     /locus_tag="VLL95_06005"
     CDS             complement(2810..>6256)
                     /locus_tag="VLL95_06005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38450.1"
                     /translation="ITIALLSCCLFWAETGNGQSNIRKGKIAVQPGPVKIDSLSIVPG
                     SFVIAGYDSSWYTLDAARSVLFWKRTPATDSVSIQYRVFNFSLGATTYRYRFDSISSR
                     FRAVPSKTTRPVASDRLFDFGNMTYTGSLGRSISFGNAQDAVVNSLFNLQMNGMIGDG
                     IRLSAAISDNNIPIQPDGTTQQLNEFDRIWLQFQKDGWTFNIGDIDIREQPTYFLSYF
                     KRQQGLAFETKTKEGKNISNRMLVSGAIAKGKFTRNIFFGLEGNQGPYRLTAPNNELY
                     FVVLAGTERVFIDGVQLQRGEDQDYVINYNTGEIRFTPRQLINKDKRIQIEFEYADRN
                     YLNSLLYLGNKFRYKDKIEFDLGLYSNADAKNSPINQVLSNEQKQFLSTIGDSIQQAY
                     FPSAISSSFDPGKILYEKIDTLVNNVGFSIYRYQPQQRDVMYTLSFTDVGEGKGYYLP
                     LLNAANGRVFEWVAPINGVPQGRYMPVVLLVTPKKQQMISGAFTYHFSASTRASADVG
                     YSYTDVNTFSSKDKDNNGGLGLRLKVNDQRRWNKGSKAWQLLSEARYENVGEQFRPLE
                     RLRTVEFLRDWGLPFDAGFAHEQLYGITAGLNTGAQHQVTFSYDGYRRDNNYQGSRQT
                     IAHSINDKGWNVQDAFLYTKFSGASFDGYFLRPTISLSKRLTKWKQMEIGGAFLLEHN
                     EIKNTKADTLLPFSFSFRDWKAFVRSDASKRNRWSLNWMQRANQYPLPDGWVPLDVNN
                     NYNLQVELFNSMAHQFRLNAGYRNLTVKTKGITNLQSDNTLLGRGEYFLNLAKGAITG
                     NLLYETGAGQEQQRNFSYVEVPAGRGEYTWIDYNADGIQQLNEFEVAQFSDQAKFIRI
                     FTPTNVFVKVVYNTFNYSVMLSPANIWRRDSSQVKRFLAKLNVQSSFQTSSKVISDGS
                     LYLNPFAGVINDTTLISHLSNLANTLSYNRFSTKWGFDVTQVRNQVKALQTYGFESRI
                     IKDFSLRLRKNSGRYFTWLLTAKTGSQQLITPNQKFDNRNFDISINSLSPSLTFTKGA
                     NLRIQGTYKWDKRKGLAIGKEQQSISHSLVLESKYNLVQKGLLTGRFTYANIDFDGVP
                     NSTLSFNMLDGLQPGTNLLWTIDFTRRLANALDLSFQYEGRKPGDTRIIHVGRASLRA
                     IL"
BASE COUNT         1656 a         1532 c         1467 g         1601 t
ORIGIN      
        1 ccaacacgcc accgactata tcgagaagtt cctggtagca aaatttcacc cggccaccat
       61 cattattggg tatgaccatc ggtttggcaa aaacagggaa gacaattatc aactgcttga
      121 aaagtacagg ggcccatacc attaccaact gatagagatc ccggaggctg tcatcaaaga
      181 caacaccatc agttccaccc gaatccggaa agcattgagc catggagaaa ttgccgaagc
      241 caatgattta ctggggtatc actacttttt tgaaggtctg gtgatccagg gcaacaaact
      301 gggaagaacg ataggttatc caacagccaa cctgctccag agcgatgtgg agaaactggt
      361 gcctggcaat ggcgtgtatg cggtgcaagt gacacttcca tcgttgcccc aattcggcac
      421 cttgaatggc atgatgaata ttggagtgcg gcccactgtt gatggcacca aaaggagtat
      481 cgaagtcaat atctttgatt tcaatgaaga tatttacgac aagcccatgc gggtgcaggt
      541 agtggaacac ttacgcggag aacagaaatt cgatggattg gaggcgctga aacatcaact
      601 ggaccaggat gaaatgcata gccgcgccat tcttaagaca ctcgctattc agcagcaggg
      661 ctgatcattt tcaccaccat ttatttcagt aagttggcat cagacacatt ggaagcatgt
      721 accccaatgc tcttcaggtt gtattcatgc aatagcagca gcgcctgctc cacgcccttc
      781 tgccggtaat tcttagcgca attgatgatg tcctttacat aagggttcag cgattgatac
      841 cccagatgtt gtgcaaggcg atattcatcg ttggtgcccg caccaaacac caggtaagcc
      901 ttgctgaaaa aagaatacaa ggtgggcagc aattgcatga tgggcaaggc tttggggttg
      961 ccttcgaagt attgaatgat ttgcagacac cttgtcatgt tgcgctgcgt aagcgcatgt
     1021 tgcaattcaa aggcattgta ctccttgctg atgcccacaa atgtttccac atcgtcttca
     1081 ttgatctcac gccgatcctc caggttgatc aaaaccttat ccaattcatt ggctaaacgc
     1141 gaaagatcgt tgccgatgtg gtctaccagc aaatgcaccg ctttgtgggt aacaccaaag
     1201 ccctggcctt tggcatactg ctgtacccaa ccgggcagct ctgaatcaaa gagttttttg
     1261 gtactgagta cttctccttt ttgcttcagc agtttggcca ttttgctgcg gccgtcaatc
     1321 tttttttgct tgtaggcaac tacgagaatg gtactggaca aagggttttc gatataacct
     1381 tccagtttct cgatatcctt catgtattgt gcttctttca acaataccac ctgcttttcg
     1441 gcaaacatgg ggtaacggcg acaggcattt actaccgatg tccaatccgc atcacgacca
     1501 tagaaaacag atagattgaa accagcttcc gattcattca ggatgttttt ctcggcatag
     1561 tctaccacct ggtcaatgaa aaatggctcc tctccttcca gccagtatac aggcttgaaa
     1621 gtgccctttt tgaactcctg gatgatcttg tcggatacca cacaacaaaa aaaaggaatt
     1681 gtgaaaccgg gggtttagaa agtttttaac agcgtcagca aaatgttctg gcacggtgtt
     1741 agctttatac atcagcaaac agatagcaac atggaagaaa tgaacaccgg gcaatattca
     1801 accgaaaaat cgccctccaa caacaaaacc acccttattt acagtgtgct ggccattgcc
     1861 ctgctggcca catggggtta tatcatttac gacaaaaaca aggtaaaaga gcaggtaact
     1921 gcccttacca cccaaaatac catggtaacc agcgaacgtg accaggtaag ggaattgtac
     1981 aattcatcgc tggcccgcct cgacagcctg atgggtgaaa accagaacat ggccgacaac
     2041 ctggccaacc gcgacagcga gatcaccaag ctgcgtgccg agatcaggaa agtggtgaat
     2101 aacaagaatg caactgcttc tgacctggca cgtgcacgcc aaatgatcaa agaactgaat
     2161 ggcaagatcg aaggcctggc tgcagaagtg gacaggttgc agggtgaaaa ccagcaactg
     2221 gtagccacca atgaaagaat tacccaggaa aagcaaaagg tggaaaccga cctggccaca
     2281 acacaaaatg aaaagcaaag cattcagaag acactggatg agacaatgga cgtagccagc
     2341 accctgaaag cttcgaacat caacattttt gcagtgaatg aaaaaggttc aggcaaagag
     2401 aaagaaacaa gttctgccaa acgtgctgac aagctgcgca tcactttcga ccttgatcct
     2461 aacaggctgg ccaaaaccgg tgaaaaagaa ctcttcattg ccgtaaccgc acctgatggt
     2521 aagcccatcg ctaccactgc cagctttgct acccgcgaag aaggtgaaaa gccctacact
     2581 tcaaaagtgt cggtacaata cgaaaatgga aagcgcacac ccgtaagctt tgattggaaa
     2641 gcagataaaa atttccagtc aggcgattac aagattgaga tctatcacaa tggtttcaaa
     2701 attggtgaag gtgttcgcag cctgaagaaa ggtggcattt tcgggtaatc tgatactgaa
     2761 acccagctat aaattggtgg ccggtccttt gtggggctgg ccgctttttt tacagtatgg
     2821 ccctgagcga tgccctgccc acatgaatga ttcgggtatc gccgggtttg cgtccttcgt
     2881 attgaaaact gagatccagg gcatttgcca atcgccgggt aaaatcaatg gtccacaaaa
     2941 ggttggtgcc gggttgcaac ccatcgagca tgttgaacga cagcgttgaa ttgggaacgc
     3001 catcaaagtc gatattggca taggtaaacc tgccggttag cagccccttt tgcaccaggt
     3061 tgtacttact ttccagcacc agcgaatgac tgatgctctg ctgctccttg cctattgcca
     3121 acccttttcg tttgtcccat ttgtatgtgc cctgtattct caggttggcg ccttttgtaa
     3181 aagtgagcga tggcgacaaa ctgttgatgc tgatgtcaaa atttcgattg tcgaatttct
     3241 ggttgggtgt tatcagttgc tggctgccgg tcttggcggt aagcagccat gtaaaatacc
     3301 tgcccgaatt tttgcgcagc ctcaatgaaa aatccttgat gatccttgat tcaaaaccat
     3361 aggtctgcaa ggctttcacc tggtttcgaa cctgcgtgac atcaaaaccc catttggtgc
     3421 tgaaccgatt gtaagaaagt gtattggcca ggttggacaa gtgagagata agcgtggtat
     3481 cattgatgac accggcaaag gggttcaggt acaaactccc atcgctgatc actttgctgc
     3541 tggtttgaaa actcgattgc acattcaact ttgccaggaa tcgtttgact tgcgaactgt
     3601 ctcttcgcca gatattggcc ggcgaaagca ttacagaata gttgaacgtg ttgtacacca
     3661 ctttcacaaa tacattggta ggcgtaaaga tgcggatgaa ctttgcctgg tcagaaaact
     3721 gcgctacttc aaattcattg agttgttgaa tgccgtcagc gttgtaatct atccaggtgt
     3781 attcccctct tcccgctggc acttccacat aactgaaatt tcgttgctgt tcctggccgg
     3841 cgccggtttc gtacagcagg ttgccggtga tggctccttt ggccaggttg agaaaatact
     3901 cgccacgacc cagcaatgta ttatcggact ggaggttggt aatgcctttc gtttttactg
     3961 tcaggttccg gtagccggca ttgaggcgaa actgatgtgc catgctattg aacagctcta
     4021 cctgcagatt gtaattgttg ttcacatcca atggcaccca tccgtcgggc aagggatact
     4081 gattggcccg ctgcatccaa tttaaactcc agcggtttct tttggaggca tcgcttcgca
     4141 caaatgcttt ccagtcgcgg aaagaaaaac tgaatggcaa cagggtatct gccttcgtgt
     4201 tcttgatctc attgtgttcc agcaggaatg ctccgccaat ttccatttgc ttccactttg
     4261 tcaatcgttt ggacaggcta atagtgggac gcaaaaaata cccgtcaaaa gaggcaccgc
     4321 taaatttcgt atacaaaaaa gcatcctgca cattccatcc tttgtcgttt atcgaatgcg
     4381 caatcgtttg cctgcttccc tggtagttgt tatctctcct gtatccgtca tagctgaacg
     4441 taacctggtg ttgagccccg gtattgagcc ccgcggttat cccgtacagc tgttcatgtg
     4501 caaaccctgc atcaaaaggc agcccccaat cacgcagaaa ttccactgtg cgcaatcgtt
     4561 ccaaaggcct gaattgttct cccacatttt cataccgtgc ttccgacagc aactgccagg
     4621 ctttggatcc tttgttccac cggcgctgat cattcacttt caaccgcagg cccaatcctc
     4681 cattattgtc cttgtccttc gacgaaaaag tgtttacatc cgtgtagctg tagcccacat
     4741 ccgcgctggc ccgggttgac gctgagaaat ggtacgtgaa tgcgcctgag atcatctgtt
     4801 gctttttggg tgtcaccaac agcaccaccg gcatatacct gccttgcggt acaccgttta
     4861 tgggagccac ccattcaaac acccgcccat tggccgcatt cagcaatggc aggtagtagc
     4921 ccttgccttc tcccacatcg gtaaacgaca aagtgtacat gacatctctt tgctgcggct
     4981 gataccggta aatactaaaa cccacattgt tgaccagggt atcgattttc tcatacagga
     5041 ttttacccgg gtcgaaagaa gaagaaatgg ctgatggaaa ataggcttgc tggatgctgt
     5101 cgcctatggt actcaggaac tgcttttgct cattggacaa cacctggttg atgggcgaat
     5161 ttttggcatc ggcatttgaa tacaagccca ggtcgaattc gatcttgtct ttgtacctga
     5221 atttgttgcc caaatacaac aatgaattca ggtagttgcg gtcggcatat tcaaattcta
     5281 tctggatacg cttgtctttg ttaatgagtt gccgcggcgt aaatcgtatt tcaccagtat
     5341 tgtaattgat cacataatcc tggtcttcac cacgttgcaa ctgtacacca tcaatgaaca
     5401 ccctttctgt accggccagc accacaaagt acaattcatt gttgggggcg gtaagcctgt
     5461 aaggcccctg gttgccctcc aaaccaaaga agatgttgcg ggtgaatttt cctttggcaa
     5521 tggcaccact caccaacatt cgattggaaa tgttcttgcc ttctttggtt ttggtttcaa
     5581 aagccaggcc ctgctgccgc ttgaaataac tgagaaaata agtgggttgc tcccggatgt
     5641 caatgtcccc aatgttgaag gtccagccgt ctttttgaaa ctgcaaccag atgcggtcaa
     5701 attcgttgag ttgctgggtg gtaccatcgg gttgaatggg aatattgtta tccgagatcg
     5761 ctgccgacag ccggatgcca tcaccaatca tcccattcat ttgcaggttg aacaaggagt
     5821 ttaccaccgc atcctgcgca tttccaaaac tgatactgcg gcccaggctg ccggtatagg
     5881 tcatgttacc aaaatcgaac aggcggtctg aggcaaccgg cctggtggtt ttggaaggca
     5941 ctgccctgaa gcgggacgaa atactgtcga aacgatagcg gtaagtggta gcccccaggc
     6001 tgaagttgaa taccctgtat tgaatggaaa cgctgtcggt ggcaggtgtc cttttccaaa
     6061 acagaacgga ccgggccgca tcaagggtat accaggagga atcgtaccct gcaatgacaa
     6121 aggaaccggg cactatgctc aggctgtcga ttttaactgg cccaggctgt acggcaattt
     6181 tgccttttcg aatattcgat tgtccattgc ccgtttctgc ccagaaaagg cagcaactca
     6241 acagcgctat cgtaat
//
LOCUS       DATIQF010000360         2745 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_21135, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000360 DATIQF010000000
VERSION     DATIQF010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2745
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21135"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(362..520)
                     /locus_tag="VLL95_06010"
     CDS             complement(362..520)
                     /locus_tag="VLL95_06010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38451.1"
                     /translation="MYMPFAGNYDMLLSANDATLKKMSTAFRKYYQQMKKNVKQLAAA
                     GPLRWTEA"
     gene            complement(826..>2745)
                     /locus_tag="VLL95_06015"
     CDS             complement(826..>2745)
                     /locus_tag="VLL95_06015"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HSR38452.1"
                     /translation="STSLGHQAIQLATAFHLQPIDWVSPYYRDESMLLGMGWTPYELI
                     LQLLAKSDDPFSGGRSYYGHPSSRRPDRPQMMHQSSATGMQAIPAAGAHGLKVLNKPG
                     IVVCSLGDASMTEGEVSEAMQAAVLYKLPILFVVQDNHWGISVSAHEARVMDAVQYAQ
                     GFPGFEAERIDGTDFETCYQSVEKMTAYVRSGKGPALLQAEVPLIGHHTSGVRKEFYR
                     PTEDLMWHEKHDPVPKLRNRLLKNGYTEAKLEAIEKEVEAMVLADFEKAKAAPDPDPQ
                     SVSHHVFAATPVTAEKGNRGPAGAEKVMMVDAALFAVRELMEEYPESLLYGQDVGLRL
                     GGVFRETATLAERFGEHRVFNTAIQEAFIIGSTVGMSAVGAKPIVEIQFADYIYPGFN
                     QLVTELSKSCYLSMGKFPVQSLIRIPIGAYGGGGPYHSGSIESTLLSIKGIKVVYPSN
                     VADMKGLMKAAFLDPNPVVMLEHKGLYWSKVPGTEAAKCAEPDRDYIVPLGKGRVVLQ
                     ADAAKLATGDTCCVITYGMGVHWAMAAASRFPGQLELIDLRTLYPLDEAMVYDAVKRN
                     GRVLLLTEEQQSHSFMESLAGRIQAECFRQLDAPVQVMGAIDLPAVPINVALEAVMLP
                     NPQKVADKIAQLLHY"
BASE COUNT          561 a          739 c          783 g          662 t
ORIGIN      
        1 ggggaggagt ttcgatatcg ggctggccaa tattgaggtg gtataccttg atgcctttct
       61 ttttggcggc ttccgcgtag ggaaccagtt tgcggattgg gctggcgggc atggcctcgc
      121 cgcggcggct tacactaagc ataattcggt ttttgtttga accagccatc gctggggaag
      181 cgatgccggc ggccgcaaaa gtaagccgac tgaaggagcg ggctgacgat ttcacataat
      241 aaaaaaacat ccgccggggt ggatgttagg gttggttgat ggattgatgt ttttcgattc
      301 gtgaggcaat ccaggttctt gcgacacgaa cctgtgtatt gagtgcgaca cgatcctttg
      361 cttaggcttc tgtccagcgc agcggccctg cggcggccag ttgcttcacg ttctttttca
      421 tttgttggta atacttgcga aatgctgtgc tcattttctt cagcgtggca tcattggccg
      481 acaacagcat atcataatta cctgcgaatg gcatgtacat aatgttcaga ttttaatgtt
      541 agaaaatacc gaccggggag ccatcggggt tagtttgctc ccttgactgg ctggtcagtt
      601 ggcggctgcc agttggctgg ccgacgattg ggtcaaaaaa tggaaggcgc tttgaggcat
      661 cttgttttga attgacgagg caaaactagg ccgggcaacc aggccgggca aaccaaaaac
      721 agccggctgc catgacgggc aatcggctgt ttaacaaatt aagcaattga tttacagtgc
      781 gttgactcct aatttaacat tatagtcaac cggcagaagg gatgcctaat agtgaagcaa
      841 ttgcgctatt ttatccgcca ctttttgcgg gttgggcagc ataacggctt ccagcgccac
      901 attaataggc acggctggaa ggtcgatagc acccattacc tgtaccggcg cgtcgagttg
      961 ccggaagcat tcggcttgga tacgaccggc caggctttcc atgaaagaat gagattgctg
     1021 ctcttcagtc agcagcagca cccggccgtt ccgtttcaca gcatcgtaaa ccatggcctc
     1081 atccagcgga tacagggtgc gtaggtcaat caattccaac tgtcccggaa accggctggc
     1141 tgcagccatg gcccaatgca cccccatgcc gtaggtgatc acgcagcagg tgtcgccggt
     1201 agcaagtttg gcggcatctg cctgcagcac cacccggccc ttgcccagtg gtacgatata
     1261 gtcgcggtcc ggttcggcac atttggcagc ttcggtaccg ggcaccttgc tccagtaaag
     1321 gcctttgtgc tccagcatca ctacgggatt gggatcgagg aaggcggctt tcatcagccc
     1381 cttcatgtcg gccacattgc tgggatacac cactttaata cccttgatgc tgagcagggt
     1441 gctttcgatg ctgccgctgt ggtaaggccc gccgccgcca taggcgccaa tgggtatgcg
     1501 gatgagcgac tgcaccggga acttgcccat gctgaggtag cagctcttgc tgagctccgt
     1561 caccagttgg ttgaaaccgg ggtagatata atcggcaaat tggatctcca caatgggttt
     1621 agcgccgacg gcgctcatgc ccacggtgct accaatgata aaagcttcct ggatagcggt
     1681 gttgaacacc cggtgttcgc caaaacgctc ggccagcgtg gccgtttcac gaaatacgcc
     1741 gcccaatcga aggcccacat cctgcccata cagcaacgat tcgggatatt cctccatcag
     1801 ttcccgcacg gcaaacaggg ccgcatccac catcatcact ttttcagcgc cggctggtcc
     1861 ccggtttcct ttttctgcgg tcactggggt agctgcaaaa acgtggtgac ttaccgattg
     1921 cggatctgga tcgggtgccg ctttggcctt ttcaaaatca gccagcacca tcgcttccac
     1981 ttccttctct atggcttcga gtttggcttc ggtatatcca tttttcaaaa ggcggttccg
     2041 cagttttggc acggggtcgt gcttttcgtg ccacatcagg tcttcggtgg ggcgatagaa
     2101 ttctttgcgc accccgctgg tatggtggcc tatcaggggc acttcggcct gcagcaaggc
     2161 cggccctttg ccactcctca cataggctgt cattttttca acggactggt agcaggtttc
     2221 aaagtcggtg ccatcaatgc gttcggcttc aaaaccggga aagccctggg catattgaac
     2281 cgcgtccatc acccgggctt cgtgggcgct tacgctgatg ccccagtggt tgtcctgcac
     2341 cacaaaaagg atgggcagtt tgtacaggac ggctgcctgc atggcttcgc tcacttcgcc
     2401 ctcggtcatg ctggcatcgc ccagcgaaca aaccacgatg cccggcttgt tcagcacttt
     2461 caaaccgtgg gcgccggcgg ccggaatggc ctgcatgccg gtggcactgc tttggtgcat
     2521 catttggggc cggtctgggc ggcggctgct ggggtggcca tagtagctgc ggcctcccga
     2581 aaagggatca tcagacttgg ccagcagttg cagtatcagt tcgtagggtg tccaacccat
     2641 gcccagcaac atgctttcgt cgcggtagta aggacttacc cagtcaatgg gctgaaggtg
     2701 aaaggcagtg gccagctgta tggcctggtg gccgaggctg gtact
//
LOCUS       DATIQF010000361         2219 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_36134, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000361 DATIQF010000000
VERSION     DATIQF010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36134"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..294)
                     /locus_tag="VLL95_06020"
     CDS             complement(<1..294)
                     /locus_tag="VLL95_06020"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF012913.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase domain-containing protein"
                     /protein_id="HSR38453.1"
                     /translation="MRIFITGGTFDKEYDEITGTLFFKETHLPEMLKLGRCRLDVDIR
                     TLMMIDSLQMTDADRDLIAENCIRCEHDRIIITHGTDTMVETAKVLAEKVQDKT"
     gene            complement(492..>2219)
                     /locus_tag="VLL95_06025"
     CDS             complement(492..>2219)
                     /locus_tag="VLL95_06025"
                     /inference="COORDINATES: protein motif:HMM:NF013727.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015616 - DNA translocase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HSR38454.1"
                     /translation="APVVMAEELPDEEDAIAEPAIAAPKKITPVSLREISPSGQPKSD
                     LELELNNNPEEEDLEEDAEATGSIPEITKELEPYDPSLELKGYKFPGLDLLDSHGSEK
                     VIADEAELNANKDQIIATLKNYDITIQRISATVGPTVTLYEIVPAPGVRISRIKNLED
                     DIALSLAALGIRIIAPIPGKGTIGIEVPNVRKNVVSMRSLLSSDKYLNNKFSLPIAIG
                     KTIANEHFVADLASMPHLLMAGATGQGKSVGINTVLVSLLYKKHPSQLKLVLVDPKKV
                     ELSLYRVIEKHFLAKLPGEEEAIITDTKKVINTLNALCIEMDNRYDLLKEAHVRNIRE
                     YNEKFIKRKLNPQKGHQYLPFIVLVVDEFADLIMTAGKEIEMPIARLAQLARAVGIHL
                     IIATQRPSVNIITGTIKANFPSRIAFKVSSKIDSRTILDAGGAEQLIGKGDMLISHNG
                     ELIRLQCAFVDTPEVERICEFIGTQRGYPDAFLLPEYVDEKEQEGRDFDLSDRDSLFE
                     EAARLIVQNQMGSTSLIQRRMKLGYNRAGRLMDQLEAAGIVGPNQGSKARDVLVKTEH
                     ELEQILENF"
BASE COUNT          470 a          556 c          563 g          630 t
ORIGIN      
        1 ggttttgtcc tgcacttttt cagccagcac tttggctgtt tccaccatgg tatctgtgcc
       61 gtgggtaatg atgatcctat cgtgttcgca gcggatacaa ttctctgcaa tcaaatcgcg
      121 gtcggcatct gtcatttgca ggctgtcaat catcatcagg gtgcggatat ctacatccaa
      181 tcggcaacga cccagtttga gcatttccgg caaatgcgtt tccttgaaaa aaagtgtacc
      241 cgttatttcg tcgtactctt tatcgaacgt gccacccgtg atgaatattc tcattgccat
      301 agccatgatt gaagcagtaa aattaatcat gtgcattggc cttcactcac tttaaatagt
      361 gttgccaatc tgcattttga cattttcagc catgtaaaag caaatgttga acactgtcaa
      421 cctcattcat gcattcgctg aaagagtttt acagagtgcg acaaaaaaat cggtgatggc
      481 aaaccagcgt gtcagaagtt ttcgaggatc tgttccagtt catgttcggt cttcaccagc
      541 acatccctgg ctttgctgcc ttggttgggg cctacaatgc ctgccgcttc caattggtcc
      601 atcaatcgac cggcacggtt gtagcccagc ttcatgcggc gctggataag gctggtgctg
      661 cccatctggt tttgcacgat cagcctggcg gcttcttcaa acaaggagtc acggtcgcta
      721 aggtcaaagt cgcggccttc ctgttctttt tcatccacgt attcgggtag caggaaggca
      781 tcagggtaac cacgctgcgt gccaatgaat tcgcaaatgc gttcaacttc aggcgtatct
      841 acaaaggcgc attgcaggcg aatgagttcg ccattgtggc tgatgagcat gtcgcctttc
      901 cctatcaatt gttcggcgcc gccggcatcc aggatggtgc ggctgtctat tttgctgctc
      961 accttgaagg caatacggct ggggaagttg gctttgatgg taccggtaat gatattgacc
     1021 gaaggacgct gggtggcaat aatgaggtga atgcctacgg cacgtgccaa ttgtgccagg
     1081 cgggcaatcg gcatttcaat ttccttgccg gcggtcatga tcaggtcggc aaattcatct
     1141 actaccaata caataaaagg caggtattgg tgaccttttt gaggattcag tttccgcttg
     1201 atgaattttt cattgtactc cctgatgttg cgcacatgcg cttctttcag caggtcgtaa
     1261 cggttatcca tttcaatgca cagcgcattg agggtattga tcaccttctt ggtatcggtg
     1321 atgatggctt cttcttcgcc gggcagtttg gccaggaaat gtttctcgat cacccggtac
     1381 aaactcagtt ccactttctt cggatccacc aacaccaact tgagctgcga gggatgtttt
     1441 ttgtacagca ggctcaccag caccgtgttg atgcccaccg acttgccctg accggtggcg
     1501 ccggccatca gcaggtgagg catactggcc aggtcggcta cgaaatgctc gttggcaatg
     1561 gttttgccaa tggcaatggg caggctgaat ttgttgttga gatacttatc actgctcagc
     1621 aggctgcgca tgctcaccac attcttgcgc acattcggta cttcaatacc aatggtgcct
     1681 ttgccgggaa tgggagcgat gatacgaatg cccaacgccg ccaggctgag ggcaatatca
     1741 tcttcaaggt ttttgatccg gctgatgcgc acaccggggg ccggtacaat ttcgtacagc
     1801 gtaacggtgg gacctacggt tgccgaaatg cgttgtatcg tgatgtcgta attcttgagc
     1861 gtcgcgatga tctggtcttt gttggcattc agttcggctt catcggctat tactttttca
     1921 ctgccatgcg aatccagcag gtcgagcccg gggaatttat agcctttcaa ttccagagat
     1981 gggtcgtacg gctccaactc tttggtgatc tccggaatac tacctgtggc ttcggcatct
     2041 tcctcgagat cctcttcctc aggattgttg ttcaattcca gttcgagatc gcttttgggt
     2101 tgccccgacg ggcttatttc acgcaaagag accggcgtga tctttttggg tgctgctatg
     2161 gcaggctccg caatggcgtc ttcttcatca ggcaattctt ctgccatcac tacgggggc
//
LOCUS       DATIQF010000362         3951 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_172935,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000362 DATIQF010000000
VERSION     DATIQF010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3951
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172935"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            362..805
                     /locus_tag="VLL95_06030"
     CDS             362..805
                     /locus_tag="VLL95_06030"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HSR38455.1"
                     /translation="MTFVKLNQRPSANAFSGVFDNLFNEFEQAFKHDFRNQGTFQPPV
                     NIVETEEAFHLELNAPGRNKNLFQLQVEQDVLTVSYEEKAEENASPLKYARKEFVLPS
                     FKRSFHLNEKVNAAAIQAKYEDGLLKVLLPKKVEAKPLPKQIVVQ"
     gene            987..2261
                     /locus_tag="VLL95_06035"
     CDS             987..2261
                     /locus_tag="VLL95_06035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38456.1"
                     /translation="MKYLLAFAFLLASQFIAAQDTTRVIHADSTQLRKDSAIDDRLRI
                     INMNPFFTLHVDSILQYTFEINKPADRYYWYLKNAPVGLKLDKATGTLYFKADKSYFR
                     SGKLKYDVEYKVQMGVQNLQNPLDKVDTFCIIVFYSTEIIPSRVKPTINNVMMLEEGD
                     SVKFKVQCDEGSFPTEQITLLTNIPISDYKAVRKCDDQFEWIVPFDFIKDNDTAKQRQ
                     LNLHFIGTDKFYNRDTAIVSLIIKPGIDYSRQNELHRKIQEEVAAYINDLKLTFYVVS
                     SSVKKNKSTRTTFDVTGSTTALAGTVLATTGATETAKDIGKILPSVGLTLVPVKEAVA
                     PSKVQEQNTAAQIRTVIKRLEYLQSENALSGPKDVNVIAKTKKLQDELKQTRFQLIDL
                     PLVEFDPNVSREDADKYFKDPKVNKKYKLKVN"
     gene            complement(2262..2723)
                     /locus_tag="VLL95_06040"
     CDS             complement(2262..2723)
                     /locus_tag="VLL95_06040"
                     /inference="COORDINATES: protein motif:HMM:NF024297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSR38457.1"
                     /translation="MKFTSIMLLSLLLVNSNNLTAQSSEADQVKAVINGLFTAMKNAD
                     SVAVEKAFATGAIMETIAKTKLQSDTIRSNTTAQFAGSIKRQPAGALDERIEFGSILV
                     DGNLAHVWTPYKFYYNGNFSHCGVNSFELVKLNGEWKIRYLIDTRRKDNCN"
     gene            complement(2786..>3951)
                     /locus_tag="VLL95_06045"
     CDS             complement(2786..>3951)
                     /locus_tag="VLL95_06045"
                     /inference="COORDINATES: protein motif:HMM:NF014803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38458.1"
                     /translation="CTKSSHFSFVVEEALKHGIHLETSFAYDIEIINKLYEKRKINKD
                     IHVICNGYKQKSYTSRIAKLLNSGFKNVIPILDNKEELNAYKRSVKVPFKLGIRVAAE
                     EEPTFPFYTSRLGIRAKDILEFYVDNIEGYEEKFQLKMLHIFLNKGIKDDIYYWSELN
                     KVVNLYCQLKKICPELDSINIGGGFPIKHSLGFDYDYQFMINEIVGIVKAACKKAKVP
                     MPNLFTEFGSYTVGESMAHIYSVIGEKVQNDRECWYMIDSSFITTLPDTWGIGERFLM
                     LPVNKWENPYQRVVLGGITCDSHDYYDSEEHINEVFLPKLNGESNEPLYVGFFHTGAY
                     QDQISGYGGIKHCMIPSPKHVILEYDKNGKLIDWVYAKEQSAQSMLKILGYIK"
BASE COUNT         1121 a          876 c          857 g         1097 t
ORIGIN      
        1 acatcatcag gggaaagcaa ttcttcaaaa ccgtactccg tgagttcgga tttcatgggt
       61 tctactatct cggctggata catgattctt taatttttta tgtttgattg gggagcaaat
      121 ttccgcgatt atctgttatg aaaaaccggt ttctcaatgt tgccgatttc ttttctaatt
      181 tcgaaaagag caatagcaac tgccaatacg gcgcgtttct aaagctttaa gtgtcatagt
      241 ggcgctttta tttcgaatga cctgaagaat ttgcaagaga tcggccgtag aaatgcgatg
      301 gaatgagttt tggtgtcgac tggaaggaag aaaacatcat tcaaccccaa aaaatagaaa
      361 tatgacattt gtaaaactca atcaacgccc ttccgccaat gctttcagcg gagtattcga
      421 caatctgttc aatgaatttg agcaggcatt caagcatgat ttccgaaacc agggaacatt
      481 tcagccaccg gtaaacattg ttgaaacgga ggaagctttt cacctcgagt tgaatgcacc
      541 tggccgcaac aagaacctgt ttcagttgca ggttgaacag gatgtgttga ctgtcagcta
      601 cgaagaaaag gctgaagaaa atgcaagtcc tttgaagtat gcgaggaagg aattcgtgct
      661 gccatccttt aagcgcagtt ttcacctcaa tgagaaagtg aatgcagcgg caatccaggc
      721 taagtatgaa gatggcctgt tgaaagttct gcttcccaaa aaagtggaag ccaagccttt
      781 gcccaagcaa atagttgttc aataaaaaaa ataacaaatt ccgatatcaa tcggtttgta
      841 tactagcagt tggtttttgc agcccgcctg attcttcaga cgggctttat attttccaat
      901 gtactttcgc agcgcctcat tacgttagga acatgccccc aaagccgggg tgattgacaa
      961 ctgtattgta aagagacttc cgttagatga aatatttact ggccttcgct tttttactgg
     1021 cttctcaatt cattgccgca caagatacta ccagggtcat tcatgccgac tcaacgcagc
     1081 tccgcaaaga ctctgctatt gatgaccgac tacggatcat caacatgaac ccctttttta
     1141 cactgcatgt tgattccatt ttacaataca ccttcgaaat caacaagccg gccgacaggt
     1201 actactggta tcttaaaaac gctccggtag gactcaaact cgacaaagca accggaacgc
     1261 tgtacttcaa agctgacaag tcatatttca gaagcggaaa gctgaaatat gatgtggaat
     1321 acaaagtgca aatgggtgtt caaaatttac agaaccccct ggacaaggtg gatacttttt
     1381 gcatcattgt tttctacagc acagaaatca ttccctcaag ggtgaagccc accatcaaca
     1441 atgtaatgat gctggaagaa ggcgactcag tgaaattcaa agtgcaatgt gatgaaggct
     1501 cctttcctac tgagcagatt acattgctta ccaatattcc gatcagcgac tataaagccg
     1561 tcagaaaatg tgatgatcag tttgaatgga ttgtgccctt cgactttatc aaagacaacg
     1621 acactgccaa acaacgacag ttgaaccttc atttcattgg cacagataaa ttctataatc
     1681 gagacactgc catcgtttcc ctcatcatca agccgggtat cgattattcc aggcaaaacg
     1741 aattgcatcg aaaaatacag gaagaagtag ctgcctatat caacgacctg aaactcactt
     1801 tttacgttgt gagttcttcg gtcaagaaaa acaaatcaac ccgtaccaca tttgatgtta
     1861 ctggatctac cacggccctg gctggtactg tattggctac aacaggggcc actgaaacag
     1921 caaaggatat cggcaaaata ttacccagtg taggcctcac cctggtgccg gttaaagaag
     1981 cggtagcacc cagcaaggta caggagcaga atacggcggc acaaatccga accgttatca
     2041 aacgtttgga atacctgcaa tcagagaatg cattatctgg ccccaaggat gtgaatgtga
     2101 ttgcaaaaac caaaaagttg caggacgaat tgaagcaaac caggtttcaa ctgatagacc
     2161 tgcctttggt tgaattcgac cccaatgtgt cgagagagga tgcagacaaa tacttcaagg
     2221 atcccaaagt gaacaagaag tacaaactga aagtgaattg atcagttgca gttatccttt
     2281 cgccgggtat caatcaggta cctgattttc cattcgccat tgagctttac caattcaaac
     2341 gagttgacac cgcaatggct gaagttgccg ttgtaataaa atttgtaagg tgtccacaca
     2401 tgggccaggt taccgtctac cagtatagat ccgaattcaa tcctctcgtc gagggcgcct
     2461 gctggctgtc gtttgataga accggcaaat tgtgccgtag tatttgaacg gatggtgtca
     2521 gactgtagct ttgtttttgc tatcgtttcc atgatggccc ctgtggcaaa ggctttttca
     2581 acagcaaccg aatcggcatt tttcatcgcc gtaaatagcc cgttgataac cgcctttacc
     2641 tggtccgcct ccgagctctg tgcggtgagg ttattgctat taactaacag caaggacagc
     2701 agcattattg aagtgaattt catggcatgt tttgtttcta cgtgaaaagt agtaacaaaa
     2761 aaagcggctt tgaggccgct tatcattatt tgatgtatcc gagaattttg agcatgcttt
     2821 gagcactttg ctctttggca tacacccaat caatgagctt gccattttta tcatactcca
     2881 atatcacatg cttgggcgaa ggaatcatgc agtgcttgat tccgccgtag ccactgatct
     2941 gatcctggta ggcgccggta tggaaaaacc caacatacaa gggctcattg ctttcgccat
     3001 tcaatttggg caaaaacact tcattgatgt gttcttcaga atcatagtag tcgtggctgt
     3061 cgcaggtgat gcctccgagt acaacacgtt ggtaaggatt ctcccatttg tttaccggaa
     3121 gcatcaggaa gcgttcaccg ataccccagg tgtctggcag ggtggtaatg aaagaggaat
     3181 cgatcatata ccagcactca cggtcgttct ggactttttc gccaatcaca ctgtagatgt
     3241 gcgccatgct ctctcccact gtgtagctgc caaactctgt aaacaaattc ggcataggca
     3301 ctttggcttt tttacaggcg gcttttacga tgcctacgat ttcattgatc atgaactggt
     3361 agtcgtagtc aaagcccaat gagtgcttaa tgggaaatcc accaccgatg ttgatggaat
     3421 ccagttcagg gcagatcttc ttgagctggc aatacaggtt taccactttg ttcaattcgc
     3481 tccagtagta gatatcatcc ttaatcccct tgttcaggaa aatgtggagc attttcaact
     3541 ggaacttttc ttcataccct tcgatattgt ctacataaaa ctcgaggatg tctttggcac
     3601 gaatgccgag gcggctggta taaaaaggaa aggtaggttc ctcttcggcg gccacacgaa
     3661 tgcccaattt gaacggcact ttcactgagc gcttataggc attcaattct tccttgttgt
     3721 caagaatagg aatgacattt ttgaagccgc tgttcagcag ctttgcaatt cggctggtat
     3781 atgatttttg cttgtagccg ttgcatatca catggatatc cttgttgatt ttgcgctttt
     3841 catacagttt attgatgatc tcaatatcgt atgcaaagga agtctccagg tggatgccat
     3901 gtttcaatgc ctcctctact acaaaactga agtggctgct ttttgtacaa t
//
LOCUS       DATIQF010000363         3089 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_5854, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000363 DATIQF010000000
VERSION     DATIQF010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3089)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3089)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3089
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5854"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..315
                     /gene="metG"
                     /locus_tag="VLL95_06050"
     CDS             <1..315
                     /gene="metG"
                     /locus_tag="VLL95_06050"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR00399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase subunit beta"
                     /protein_id="HSR38459.1"
                     /translation="FDDFAKIDLRVGTIVSAEKVEKADKLLKLQVDLGFETRTIVSGI
                     ALHFKPEEIVGKQVTVVVNLAPRKMRGIESQGMILMAEDASGKLHFVNPEDKINAGAG
                     VS"
     gene            473..1510
                     /locus_tag="VLL95_06055"
     CDS             473..1510
                     /locus_tag="VLL95_06055"
                     /inference="COORDINATES: protein motif:HMM:NF025749.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4421 domain-containing protein"
                     /protein_id="HSR38460.1"
                     /translation="MKHLLLSLIGCCLITIAVAQTGAKDSSAPRQKEWIEAMDNYINL
                     RLSQNRDVEEFVVDQGNQRYVISPNISSITRLGFSYRFLSFGYNFIAKFLPGNDDDDI
                     RGSTKASGYDLGFNFSKWQQELSYSKTKGFYLENTSDFNPSWQQGDPYLLVPNLEYKN
                     FQGFTGYKFNPNFSFPALVSQTERQLKSAGTLMPTLLYRYFIIDDKTALTGTNSSQKS
                     NSFEALIGIGYYYTFVVNKNFYLALGVRPAAGMVFTKLTTRLPSGNTVTHQDNFVFRM
                     NARAGVGYNGERFFAGIYARAFGSTETQENSTVVNYDSRIAAQAFVGYRFNAPKWLKK
                     NVEKVETLSPF"
     gene            1610..2221
                     /locus_tag="VLL95_06060"
     CDS             1610..2221
                     /locus_tag="VLL95_06060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38461.1"
                     /translation="MKPFLFSAFIMAAAVMSCQSGSGNQPTATTVDTAQTIQKENDTA
                     KADGQPIDSIATEDNTTRLIRLTLNDLHKNDISKELIDTFSRHFKFSQYDLNNDGKKE
                     ILVGLTGSFFCGSGGCTVYLLTHQGDVITKFTVVEYPVYVDTAINLGWKNLVMYSGGA
                     HRIVKWNGKSYPSNPSTLPKMKGDEKSFQTKLLDWEREPLYQF"
     gene            2508..>3089
                     /locus_tag="VLL95_06065"
     CDS             2508..>3089
                     /locus_tag="VLL95_06065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38462.1"
                     /translation="MKYLKRIVLSILGLVVVLFVAVNLLLAFKAKELLQRVVAEASND
                     SYRLESSKVNFFFINPGISADSVRIVPANAGPRQATISFARVEIRINSILALVFRKQL
                     EVRKIEFVSPDITVYARQRSGIEKKGIAQTIHEVQSKLLQVLHSLNVSNFNLSDGALT
                     LYTADTAANTYLGVNHINLVLQDIELSQSPGSKR"
BASE COUNT          864 a          701 c          716 g          808 t
ORIGIN      
        1 tttgatgatt tcgccaagat tgatctgcgg gtgggcacta tcgtatcggc agaaaaagta
       61 gagaaggctg ataaactgct gaagttgcag gtagacctag gctttgaaac ccgcaccatt
      121 gtaagcggca ttgccctgca ctttaagccc gaagaaattg ttggcaagca ggtgaccgtg
      181 gtggtgaacc tggcaccccg aaaaatgcgt ggcatcgaaa gccagggcat gatactgatg
      241 gctgaagatg ccagtggcaa gctgcacttc gtgaacccgg aagacaagat caatgcgggg
      301 gcaggtgtga gctgatggcc acggcaaata tgatgattaa gaaaggcagc gttttacaat
      361 gctgcctttt tgtttaaacc gttgatgaaa gtaaacccgg atttgaagaa aatttcgggc
      421 aacaaagcga tgcttttgta aattgaaaat cgttgaacca atttatctgc ctgtgaaaca
      481 cctgctcctt tccttaattg gctgttgcct catcaccatc gctgttgcgc aaactggggc
      541 gaaagacagt tccgctccca ggcaaaagga atggattgag gccatggaca actatatcaa
      601 cctccggcta tcacagaatc gggatgttga ggagtttgtg gttgaccagg gtaaccagcg
      661 ctatgtgata tcgcccaata tatcaagcat cacccgcctg ggtttcagtt atcgcttcct
      721 gtcgtttgga tacaatttta tagccaaatt cctgccgggc aatgacgatg atgatattcg
      781 gggttccacc aaggcatcgg gctacgacct gggtttcaat ttttcgaaat ggcaacagga
      841 actttcctac tccaaaacga agggatttta tcttgagaac acgtcggatt ttaatccttc
      901 gtggcagcaa ggcgatcctt atctcctggt gcccaatttg gaatacaaga atttccaggg
      961 atttaccggt tacaaattca atccgaattt ttcattccct gcattggtga gccaaacaga
     1021 acggcaattg aaaagtgccg gcacccttat gcccaccctt ttgtaccgct attttattat
     1081 tgatgataaa acagctttga caggaacaaa cagcagtcaa aagagtaaca gttttgaagc
     1141 gttgattggc atcggctatt actacacatt tgttgtcaac aaaaatttct atttagccct
     1201 tggagtaaga cctgctgcgg gtatggtttt caccaagctt acgactcggc ttccatccgg
     1261 taacactgta acccaccagg ataattttgt gttcaggatg aacgccaggg ctggagtagg
     1321 ttacaatggc gaaaggtttt ttgcaggtat ttatgccagg gcgtttggct ctaccgaaac
     1381 acaggagaat tcaacggtgg ttaattacga tagccgcata gctgcgcagg cttttgtggg
     1441 ttaccggttt aatgcgccga aatggctgaa gaaaaacgtg gagaaagtgg agacgctttc
     1501 tcctttttga aaaatgacgg caggcgtata acaaaaaaat tgaaagatga gtcattaata
     1561 catccccgta taaatgtcga tctcttaaca ccactcaaaa cattgcttaa tgaaaccttt
     1621 tcttttttcc gcattcataa tggctgctgc tgtaatgtct tgccaatccg gctctggcaa
     1681 tcagccaacg gcaactacag tagacactgc ccagacgatt caaaaagaaa acgataccgc
     1741 aaaggctgat ggccagccaa tcgactcaat cgcaactgaa gacaatacca cccggttgat
     1801 ccgtcttacc ctcaatgacc tgcacaaaaa tgatatttca aaagagctaa ttgacacatt
     1861 tagccgccat ttcaaattca gccagtatga tttgaacaat gatggcaaga aggagatact
     1921 ggtgggcctt accggatcct ttttttgcgg ctcgggtggc tgtactgttt acctgcttac
     1981 ccaccagggc gatgtaatta caaaattcac ggtggttgaa taccctgttt atgttgatac
     2041 tgccattaac cttggctgga agaacctggt gatgtacagc ggtggcgccc atcggatagt
     2101 aaaatggaat ggaaagtcct acccctccaa cccaagcacg ctacccaaaa tgaaagggga
     2161 tgaaaaatcc ttccaaacaa aacttcttga ctgggaaagg gagccactat accaattctg
     2221 aactgccgga ctggttatgt gctaaattga ttcggttgag ataaagaaat aagagtgatt
     2281 gtgggcgttc taatatcctg gtgaactgtt gtaacagctt ctgcttattt acagtgatct
     2341 ttttgccggg cctttttcag cttgaatatt gagtactcac tggagcaagc atatagcaat
     2401 gagaacttcc aggtgagtca tttgggacga ccaaaaacag ataacaagtt tgccttacca
     2461 attcattcat ttcattaaat tacatccatc accaaccggc agcctttgtg aagtacctca
     2521 aacgaattgt tctttccatc cttgggttgg tggtggtgct gtttgtggcg gtgaacctgt
     2581 tgctcgcctt caaagccaag gaattgctgc aacgggtggt ggctgaagct tcgaacgaca
     2641 gctaccggct ggaatcctcc aaagtcaatt tctttttcat caaccccggc attagtgccg
     2701 actctgtacg catagtaccc gccaacgctg gcccccgaca ggcaaccatt tcgtttgcca
     2761 gggttgaaat caggatcaat tccatcctgg ccctggtgtt ccgcaaacaa ctggaggtaa
     2821 ggaagatcga atttgtttct cccgatatca cggtatatgc ccgccaacgg tcaggcattg
     2881 aaaaaaaggg aatcgctcaa accattcacg aagtgcaatc gaagctgctg caagtattgc
     2941 attcgttgaa tgtatccaac ttcaacctga gtgatggcgc ccttaccttg tatactgccg
     3001 acactgcagc caacacttat ttgggcgtga atcatatcaa cctggtattg caggatattg
     3061 aactaagcca atcacccggg agcaaaaga
//
LOCUS       DATIQF010000364         1953 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_294697,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000364 DATIQF010000000
VERSION     DATIQF010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1953
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294697"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..741)
                     /locus_tag="VLL95_06070"
     CDS             complement(<1..741)
                     /locus_tag="VLL95_06070"
                     /inference="COORDINATES: protein motif:HMM:TIGR01891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSR38463.1"
                     /translation="MRQLLLLPMLAVFGALAAQEMPKPFNASLQQVEPQMITWRRHFH
                     EFPELSNREVNTGKYIADYLRSIGLEVRYPVAKTGVVAILKGGKPGPNVGLRADIDAL
                     PIVERAPVPFASKVKAEYNGQSVGVMHACGHDAHTAILMATAKTLKDMQADVPGTVVF
                     LFQPAEEGAPNGEEGGAPLMIKEGAMDNPKLDAVFGLHMAAGAPAGRLSYKSGAHQAS
                     SDLFTITVKGKGNHGAMPWGSVDPISVAT"
     gene            830..967
                     /locus_tag="VLL95_06075"
     CDS             830..967
                     /locus_tag="VLL95_06075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38464.1"
                     /translation="MKKHVWLLGSLLVMTSIWAQAQRSNKYSDVLSLFREWRAFEQPP
                     L"
     gene            1022..>1953
                     /locus_tag="VLL95_06080"
     CDS             1022..>1953
                     /locus_tag="VLL95_06080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38465.1"
                     /translation="MQLQKRLQQIDTTGWSRPQQSDWMILWAEMNGYDFNQRVLKSWE
                     RDPAFYKTIWMERSDVPAHEGPTHHAIIDVWKYVFPLSAEEKDELLKGLSVIEPLNQQ
                     AQQNLTGNAKELWIAGIRDIRAQSKELETLKQMPRVNDDAALVAAIDKAKLSTDALVA
                     WLEKEAPAKNGPSGIGKDNYTWYQQHVHLVPLTWDDEVQLLQRELTRAWTALKLEEHN
                     NRNLPPLTDASSPEAYQALAEKASKSLLQFLSQQDILTVKPYFAPALRQHLGSYLPPE
                     KRNFFTIGEHYDPRPLYSHFYHWFELARMDLEPHA"
BASE COUNT          494 a          550 c          488 g          421 t
ORIGIN      
        1 cgtagccacc gaaatgggat ctacggatcc ccatggcatg gcgccgtggt tgcccttccc
       61 tttcacggtg atggtgaaca aatcggaaga ggcctggtgg gcacccgatt tgtaagaaag
      121 cctgcctgca ggggcgccgg ccgccatgtg cagtccaaac acagcatcga gtttgggatt
      181 atccatggct ccttctttga tcataagcgg cgctccgcct tcttctccat tgggggcacc
      241 ttcttcggcg ggctggaaca ggaacaccac cgtacccggc acatcggcct gcatgtcttt
      301 gagtgttttg gcagtggcca tcaggatggc ggtgtgcgca tcatgaccac aggcatgcat
      361 cacacctacg ctttgcccat tgtattctgc cttcactttg gatgcaaaag gcaccggtgc
      421 cctttccaca atgggcaacg catcaatatc agcacgcagc cctacattgg gcccgggctt
      481 tccacctttc aggatggcta ccacacccgt tttggccacc gggtaacgta cttccaaacc
      541 aatggaacgc aggtaatcgg caatgtattt gccagtgttc acttcgcggt tcgacaattc
      601 cgggaactca tgaaaatgtc ttctccacgt gatcatctgc ggctctacct gttgcagtga
      661 tgcattgaat ggtttgggca tctcctgtgc tgccagggca ccaaaaacag ccagcatagg
      721 aagcagtaac agttgtctca tcgggcaatt atttgcaagg aaattaagct aaatcctgaa
      781 tgataccctc aacaccggaa cagtgtagct gttttgctaa cttgtcgcca tgaagaaaca
      841 tgtttggctg ctcggcagcc tcctggtaat gacatccata tgggcacagg cacagcgatc
      901 caataagtat tccgatgtgc tttcattgtt ccgcgaatgg cgggcttttg aacaaccacc
      961 gctgtaaaat ggcgcccccg attaccgcaa gtccactttt gaaaaacgcc gacctgcttt
     1021 tttgcaattg cagaaacgac tgcaacaaat agacaccacc gggtggagcc ggccgcagca
     1081 atcggactgg atgatactgt gggccgaaat gaatggttat gattttaacc agcgggtgtt
     1141 gaaatcatgg gaacgggatc ctgcttttta caaaaccatc tggatggaac gcagcgatgt
     1201 gccggcgcat gaaggcccca cccatcatgc catcattgat gtgtggaaat atgtgttccc
     1261 actaagcgca gaggaaaaag acgaattgct gaaaggcctt agcgtgattg aaccgctcaa
     1321 ccagcaggca cagcaaaacc tcaccggaaa tgccaaagaa ttgtggatcg ccggcatccg
     1381 cgacattcgg gcgcaaagca aagaactgga aaccctgaaa caaatgccca gggtaaacga
     1441 cgacgctgcg ttggtagcag ctattgataa agcaaagcta agcaccgatg ccctggtggc
     1501 atggctggaa aaagaagcgc cggcaaaaaa cggcccttcc ggcataggca aagacaacta
     1561 tacctggtac cagcagcacg tgcacctggt gccacttacc tgggatgatg aagtgcagct
     1621 gctgcaacgt gaactcaccc gggcatggac ggccctgaaa ctggaagaac acaacaaccg
     1681 caacctgcca ccgctcaccg acgcttcctc acccgaagca taccaggcat tggccgaaaa
     1741 agcttcgaag agcctgttgc aatttttgtc gcaacaagac atcctcaccg taaaacccta
     1801 tttcgcaccg gccttgcgcc aacacctcgg cagctatctg cctcctgaga aacgcaactt
     1861 cttcaccatc ggcgagcatt acgatccacg ccccctgtat tcgcatttct atcattggtt
     1921 cgagctggcc cgcatggacc tggagccgca tgc
//
LOCUS       DATIQF010000365         2549 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_264490,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000365 DATIQF010000000
VERSION     DATIQF010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264490"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1285
                     /locus_tag="VLL95_06085"
     CDS             <1..1285
                     /locus_tag="VLL95_06085"
                     /inference="COORDINATES: protein motif:HMM:NF024947.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SbcC/MukB-like Walker B domain-containing
                     protein"
                     /protein_id="HSR38466.1"
                     /translation="LKELQQKKEALQQRLKELGSKKEEKIREEEKLGSQLQQAHHTIQ
                     RCQETLDAYTGVSMEDKLAEFQREYINKVEYTIDLDVIDKVRNQISDGLRKKLDDLNS
                     KAESAKRHLNTAITRFKYPNDEKLLQRFPDWRGDTHRLPESVDLAGEYMDLLEKLEGE
                     ELREQRDRFKKYLNEEMINRMSSFGGRLNEHLQQIQRRITELNQSLAGISYRQRPQTF
                     IQLEAREELSPNIKDFRHRLVAWKPNLAEYHRTKDDSILEASYVKIKELIDDLESKES
                     WRREVMDVRQWLRFVAREVKAEDNSTYRSYTGTEKLSGGEQAQLTYTILGSAIAYQFG
                     ITSDGLSRRSFRFICVDEAFSRQDEEKARYLMNLCKELNLQIMVVSPDKTEEFRIVEP
                     FVARIHYVQRRSNRDSIMYDMPIKQLKEALQRKAS"
     gene            complement(1368..>2549)
                     /locus_tag="VLL95_06090"
     CDS             complement(1368..>2549)
                     /locus_tag="VLL95_06090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38467.1"
                     /translation="YTPATTNIAALPPYNVNYTDPNLKFPQVWRTNLAVDQRLPWGGI
                     VATLEGIFNKNINALNYVDVNMKPGNGQFYDGPDRRTIFPALDLTGTAAANARFINPN
                     IANVFMLTNNNDGYNYSLTAKLEKPITKNWGGLLGYTYAKTTDVAFVASTVNANVPSI
                     YGLNYVRNAFSDNDLRHRFVGNISYRLTYGNSIAGATTFTLGMVSASGTKLSYTTSND
                     MNGDGQINDLIFVPNKGSDLVFQNFTSGTTTFTAAQQAEAYDKYISNHPYLSGRRGGY
                     AERNGAELPWLTRFDFAVEQDLIVKVGKNKKANTLRLRFDVMNAGNALNNKWGVGNLS
                     TTTQPLNYRGRTTAGAPIYRLATQVVNGQTVLLQDAFVKSRTIDDVYQIQVGIRYIFN
                     N"
BASE COUNT          688 a          616 c          701 g          544 t
ORIGIN      
        1 cctgaaagaa ctgcagcaaa aaaaggaggc cctgcagcaa cgactgaaag aactgggcag
       61 caaaaaggaa gagaaaattc gcgaagaaga aaaactgggc agccagttgc aacaggcgca
      121 ccataccata cagcgctgcc aggaaacact cgatgcttat accggtgttt ccatggaaga
      181 caagctggct gaatttcaaa gagaatacat caataaggta gagtatacca ttgacctgga
      241 tgtgatcgat aaggtgcgca accagatcag tgatggcctc cgcaaaaaac tggacgacct
      301 taacagcaaa gcagaatcag ccaagcgcca tttgaatacg gcaatcaccc ggttcaaata
      361 ccccaacgat gagaagttgc tgcagcgttt tcccgactgg cggggcgata cccaccgact
      421 gcctgaaagc gtggacctcg ccggggaata catggacctg ctggaaaagc tggaaggcga
      481 agaactgcgt gaacaacggg atcgtttcaa gaaatacctc aacgaggaaa tgatcaaccg
      541 tatgagcagc tttggtggcc ggctcaacga gcacctgcag caaatacaac gccgcattac
      601 cgagctcaac cagagcctgg ctggcatcag ttaccggcaa aggccgcaaa cctttatcca
      661 gctggaggcc cgtgaagagc tcagcccgaa catcaaagac ttccggcatc gcctggtggc
      721 gtggaagccc aacctggctg aataccaccg caccaaagac gacagcatcc tcgaagcgag
      781 ttatgtgaag atcaaggaac tgatagatga tttggaaagc aaggaaagct ggcgccgcga
      841 agtgatggat gtacgccaat ggctgcgttt tgtggcccgc gaagtgaaag cggaagacaa
      901 cagcacctat cgcagttata ccggtactga aaaactgagt ggtggcgagc aggcacagct
      961 cacgtacacc atcctgggta gtgccatcgc ctaccagttt ggcatcacca gcgatggttt
     1021 atcacggcgc agcttccgct tcatttgcgt ggacgaagcc ttcagccggc aggatgaaga
     1081 gaaggcccgc tacctcatga acctgtgcaa ggaattgaac ctgcagatca tggtggtgag
     1141 ccctgacaaa accgaagagt tccgaattgt ggagccgttc gtggctcgca tacactatgt
     1201 gcagcgccgc agcaaccgcg acagcatcat gtacgatatg ccgataaagc aactgaaaga
     1261 agcattgcag cgcaaagctt cctgataaat ccttttgcgt tcaataggcg ccaaacaaaa
     1321 accgctccct tttgggagcg gttttcttgt atcgatcaaa caaccgatta gttgttgaag
     1381 atgtaacgaa tacccacctg gatctggtat acatcatcga tggtacgaga cttcacgaaa
     1441 gcgtcctgca gcagcactgt ctgaccgtta accacctgcg tagcgaggcg gtagatgggc
     1501 gcaccggcag tggtacgacc acggtagttg agcggctggg tagtggtgct caggttgcct
     1561 acaccccatt tgttgttcaa tgcgttgccg gcattcatca catcaaaacg aagacgcagg
     1621 gtattggcct tcttgttctt gccaaccttt acgatcaggt cttgttcaac agcaaagtcg
     1681 aaacgggtta gccagggcag ttcagcgccg ttacgttcgg cataaccacc acggcgacca
     1741 ctcaggtaag ggtggttgct gatgtacttg tcgtacgctt cagcctgctg agcggctgtg
     1801 aaagttgtgg taccagaagt gaaattctgg aacacaagat cagagccttt attaggaacg
     1861 aagatgaggt catttatctg gccgtcacca ttcatgtcgt tgctggtggt atagctgagc
     1921 tttgtgccac tggccgatac cataccgagg gtgaaggtgg tggcgccggc aatgctgttg
     1981 ccataagtga ggcgatagct gatattgccc acaaagcggt ggcgcaggtc gttatcacta
     2041 aaggcatttc tcacgtagtt caaaccatag atgctgggta cgttggcgtt tactgtgctg
     2101 gctacgaaag caacgtcggt agtcttagca taggtataac ccaacaaacc gccccagttc
     2161 ttggtgatgg gcttttccaa cttggcagtc agtgaatagt tgtaaccatc attgttgttg
     2221 gtcaacatga acacgttggc aatgttgggg ttgatgaagc gtgcattggc agctgcagta
     2281 ccggtgaggt caagtgcagg aaagatggta cgacggtcgg ggccatcgta gaactgacca
     2341 ttgcccggtt tcatgttcac atctacatag ttgagggcat taatgttctt gttgaaaata
     2401 ccttcaagag tagctacgat accgccccag ggcagacgct ggtcaaccgc aaggttggtg
     2461 cgccaaacct gtgggaactt caggttggga tcggtatagt tcacattgta tggaggcaac
     2521 gcagcgatgt tggtggtagc aggggtata
//
LOCUS       DATIQF010000366         2784 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_294701,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000366 DATIQF010000000
VERSION     DATIQF010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2784
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294701"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1633
                     /locus_tag="VLL95_06095"
     CDS             <1..1633
                     /locus_tag="VLL95_06095"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR38468.1"
                     /translation="GVPIPAGDEIIGVLSIQSTEQENRFNENDLRLLSTLASSVGVAL
                     HNATLFEEVKQAKMEAEAAKKQAEKANEAKSAFLSTVSHELRTPLTSVLGFAKIIRKR
                     LEEKIFPAVDKSDGKTEKTIQQIGENLQVVISEGERLTHLINDVLDLAKIEAGKMEWN
                     QESVSMPEVVERALAATTTLFEQKSLTIEKHIDQDVPIITGDRDKLIQVVINLISNAV
                     KFTDAGAVTCNVKMGNNEVIVSVKDTGIGIAKEDFGAVFEQFKQVGGDTLTDKPKGTG
                     LGLHICKEIVEHNGGRIWLEREPGKGSTFSFALPVVTEGTSRPLQLDDLVKQLKEQVA
                     QSQLATNNNNAAILIVDDDDSIRSLLHQELGDAGYTIYEARNGKEALESVRKNRPDLI
                     ILDIMMPEMNGFDVEAVLKNDPQTLDIPIIVLSIVQDKTRGFRIGIDRYLTKPIDTNL
                     LFSEIGHLLEQGKSKKKVMIVDEDAGAVKTLTEVLKEKGYMVVEAGDNDIVEKAVASQ
                     PDIIIINSQRTGENDLVKTLRFEKGMENVLFLVYQ"
     gene            1675..2055
                     /locus_tag="VLL95_06100"
     CDS             1675..2055
                     /locus_tag="VLL95_06100"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR38469.1"
                     /translation="MEKKILIVDDEAHIRMLIEQTLEELEDEGVEFLTADNGETALEI
                     IESERPNLVFLDVMMPRMNGMQVCQHIKKEKALSDVFIILLTAKGQEIDRLKGQEVGA
                     DVYMTKPFDPEILLNKAKQVLGFD"
     gene            2103..>2784
                     /locus_tag="VLL95_06105"
     CDS             2103..>2784
                     /locus_tag="VLL95_06105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38470.1"
                     /translation="MAQSPLKALLRKQSSFKAWLENYAALHASGIAITDAGGELLFGS
                     EKNDSAISVSIVLQGDEIGTVRGDEHGEIVAQLITQLLEKEAEKKKLGNEVLHMYQEL
                     NFIYNFSEKLTETIDPDTIAKIALEQAMHSIPSHSGAVVLWDDIRKVLNVPAVAGEEL
                     FNANNLSLNRNLLLQIGMNGQSEIIEDLATLKENGIIAEDTQTLVYAAMKVKHRIMGA
                     IILAGKNKE"
BASE COUNT          888 a          645 c          691 g          560 t
ORIGIN      
        1 aggcgtcccc attccggccg gcgacgaaat cattggcgta cttagcattc agagtaccga
       61 gcaggaaaac cgcttcaatg aaaatgacct ccgcctgttg tccacccttg cgtcttcagt
      121 aggcgtagcc cttcacaacg cgacattgtt tgaagaagtg aagcaggcca aaatggaagc
      181 cgaagcggcc aagaaacaag cagaaaaagc caacgaggcc aagagtgcat tcctctctac
      241 ggtcagccac gaattgagaa cgccacttac ctctgtgctt ggtttcgcca agatcatcag
      301 gaagcgactg gaagaaaaaa tcttcccggc cgttgacaag tcggatggca aaacagaaaa
      361 aaccatccag caaattgggg agaacctgca ggttgtgatt tcagaaggcg aacgcctcac
      421 ccatttgatc aacgatgtgc tcgacctcgc caaaattgag gcaggcaaaa tggaatggaa
      481 ccaggaatcg gtttcaatgc ctgaagtggt agagagagcg ttagccgcca ccactaccct
      541 gtttgagcag aaatcgctga ccatagaaaa acacattgac caggatgtac ccattattac
      601 cggcgaccgt gacaaactca tacaggtggt gatcaacctc atcagcaatg cggtaaaatt
      661 caccgatgca ggtgctgtaa cctgtaatgt gaaaatggga aacaacgaag tcattgtaag
      721 tgtgaaagat acaggcatag gcatcgctaa agaagacttc ggtgccgtgt tcgaacaatt
      781 caaacaggtg ggtggcgata cgctgacaga caaacccaaa ggcacaggat tgggactgca
      841 catttgcaag gaaattgtgg agcacaatgg cggaaggata tggctggaaa gagaacccgg
      901 aaaaggaagc accttctcat ttgcattgcc ggtggtaaca gagggcacaa gcagaccgct
      961 tcaactcgac gacctggtaa aacaattgaa agaacaggtg gcacaatcgc aactggcaac
     1021 caacaataac aacgcggcca ttctgatcgt tgatgatgac gattcaatcc gctctctgct
     1081 gcaccaggaa ctgggcgacg ccggctacac catttacgaa gcacgcaatg gtaaagaagc
     1141 gttggaaagc gttcgaaaga acaggcccga cctgatcatc ctcgatatca tgatgcccga
     1201 gatgaatggc tttgatgtag aggccgtact caagaatgac ccgcaaacac tcgacatccc
     1261 catcattgtg ttgagcattg tacaggacaa aacaaggggc ttccggattg gcatcgacag
     1321 gtatctcacc aaaccaatcg atacgaattt gttgttctcc gaaatcggcc atttgttgga
     1381 acaaggcaaa tcaaaaaaga aagtgatgat agtagacgaa gatgcaggag ccgtcaaaac
     1441 acttacggaa gtattgaaag aaaaaggata catggtggta gaagccggtg acaacgacat
     1501 cgtggaaaaa gccgtggcca gccagcccga catcattatt atcaactccc agcgcactgg
     1561 tgaaaatgat cttgtaaaaa cactgcgctt tgaaaaaggc atggaaaatg tgcttttcct
     1621 tgtttatcaa taaacattgc tcaacaaaca aactacagac ctaacactta caaaatggaa
     1681 aagaaaattc tgatcgtgga tgacgaagcc cacatccgta tgttaatcga gcaaaccctg
     1741 gaggaactgg aagacgaagg ggtcgaattt cttacggcag acaatggcga aacggcattg
     1801 gagatcattg aatccgaaag gcccaacctg gtattcctcg atgtgatgat gccccggatg
     1861 aacggcatgc aggtatgcca gcacatcaaa aaagaaaaag cactctctga tgtcttcatc
     1921 attctgctta cagccaaagg gcaggaaata gaccggctta aaggacagga agtgggtgcc
     1981 gatgtataca tgaccaagcc tttcgatcct gagatcttgc tcaacaaagc gaaacaggtt
     2041 ttgggttttg attaaggcac gaacctgaac aatttaaatc aaccgaagaa tttcaatcat
     2101 acatggcaca atctccgctc aaggccttgt tgcgaaaaca gagcagcttc aaagcatggc
     2161 tcgaaaacta tgcagcattg catgcaagtg gcatcgccat aaccgatgcc ggtggagagc
     2221 tcctatttgg aagtgaaaaa aatgacagtg ccatctcggt gagcatcgta cttcaaggcg
     2281 atgaaatagg aacggttcgg ggcgatgaac atggagaaat agtggcccaa ctgatcaccc
     2341 agttgctgga aaaagaagct gaaaagaaga aactgggcaa cgaagttttg cacatgtacc
     2401 aggaactgaa tttcatctac aacttttcgg agaaactcac cgagaccatc gacccggaca
     2461 ccattgccaa aattgcgctg gaacaggcca tgcactccat tccatcgcac agtggcgccg
     2521 tggtgttgtg ggatgacatc cgcaaggtgt tgaacgtacc ggctgttgct ggcgaggaat
     2581 tattcaatgc aaacaacctc agcctcaacc ggaatctgtt gctgcaaatt ggcatgaacg
     2641 gacagtcgga gatcattgaa gacctggcca cgctgaaaga aaacggcatt attgcggagg
     2701 atacacaaac actggtttat gccgccatga aagtgaagca ccggatcatg ggtgccatca
     2761 ttttggccgg caaaaacaag gagc
//
LOCUS       DATIQF010000367         1928 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_127619,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000367 DATIQF010000000
VERSION     DATIQF010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127619"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(74..940)
                     /locus_tag="VLL95_06110"
     CDS             complement(74..940)
                     /locus_tag="VLL95_06110"
                     /inference="COORDINATES: protein motif:HMM:NF033516.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HSR38471.1"
                     /translation="MNYAREEHDISTRQALKLFAIQPSVYYYQAKPNDDDQVRAELAK
                     LAQLHHRWGFWMMHHYLRRLNFLWNHKKVYRVYTDMQLNLRRKHKKRLPARVMEPLLW
                     PVKPNLTWSMDFMHDTLSNGVNFRTLNIIDDFNREALTIAMDTSLTSKRVIRELDQLI
                     AWRGAPQKIRVDNGPEFIADALASWADNRKIEIKFIEKGKPYQNGYMERFNRSFREEV
                     LDAYSFTRIKEAQAMAHAWLWIYNNQRPHSALGYKPPVTFLDERLQGYAFPTFIQNTN
                     LDWNSLVLNVTN"
     gene            complement(964..1230)
                     /locus_tag="VLL95_06115"
     CDS             complement(964..1230)
                     /locus_tag="VLL95_06115"
                     /inference="COORDINATES: protein motif:HMM:NF013677.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HSR38472.1"
                     /translation="MKKRKFTESQIIGILKAQESGRSVADICREHGISQPTFYQWKSK
                     YSGMEVAQLKKLKEMEAELAQYKRIVAEQTLQITVLKDVIEKKL"
     gene            1475..>1928
                     /locus_tag="VLL95_06120"
     CDS             1475..>1928
                     /locus_tag="VLL95_06120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38473.1"
                     /translation="MKPIKIIFCLLCFNILISWHEAVKFRKVLLYRHISIQIPHEFER
                     KPLQKEMYNYQVLKTSRFGNKRNTSLLLIDVYDTSYRGNDRIDSTFMEYCKQTLKSKQ
                     NPSVEFLTTNVKSTQDISIGFFSYSYIESKEKQYGAQAYIKCLNRELLH"
BASE COUNT          520 a          415 c          400 g          593 t
ORIGIN      
        1 ttgggctttc ccgctgttcg tgatgttcgc ggtttgcaat ttgcaatggc gaacttgctc
       61 ttgaaagcta cccttagtta gtaacgttta aaactaaaga attccaatca agattggtgt
      121 tctggatgaa cgtcggaaag gcgtagcctt ggagacgttc atccagaaat gtgactggcg
      181 gtttgtaccc cagtgcgctg tgtggacgct ggttgttgta gatccacaac catgcatgtg
      241 ccatagcctg ggcttccttg attcgggtga agctgtatgc gtctaatact tcctctctga
      301 agctgcggtt gaatcgttcc atatagccat tttgataagg ctttcctttc tcaatgaatt
      361 tgatttcaat cttgcgatta tcagcccatg atgctaatgc atcagcgata aattctggtc
      421 cattatccac ccgtattttt tgaggtgctc cgcgccatgc aatcagttga tccagttcac
      481 ggatgacccg cttgctggta agactggtgt ccatagcaat tgttagtgct tcccggttaa
      541 agtcatcgat gatgttaagt gttctgaaat tgaccccatt gcttaatgta tcatgcataa
      601 agtccatcga ccaggtaagg ttgggtttta ctggccacag aagcggctcc atcacccttg
      661 ctggcaggcg cttcttgtgt ttgcgacgca ggtttagctg catgtcggta tacacccgat
      721 acactttctt gtggttccac aaaaagttta gcctgcgcaa ataatgatgc atcatccaga
      781 agccccacct atggtgcagt tgtgccaatt tggccagctc agctcgtacc tggtcgtcat
      841 cattaggctt agcctggtag tagtaaacgg acggctgtat ggcaaacagc ttcaaggcct
      901 gtcgagtact gatgtcatgc tcttccctgg catagttcac caattcacgc ttctcggcag
      961 gccctagagc tttttttcaa tcacatcctt taaaactgta atctgcaaag tttgctcagc
     1021 tacaatacgc ttgtattgtg ccagttcagc ttccatctcc ttaagcttct tgagctgcgc
     1081 aacttccatc ccggaatact tgctcttcca ttgataaaac gtaggctgac taatcccatg
     1141 ttcgcggcaa atgtctgcca cgctgcggcc actttcctgg gccttcaaaa tgccaataat
     1201 ctggctctcg gtgaattttc tctttttcat tttttcctcc ctaaatgtag caccatactc
     1261 tatttttacg tgctacggtt tatagggaag ctttcataat gagtaatgca agggatatgg
     1321 taaaaaattt aaaccaaaat cctgtcaatg tacctcaact gcaaaagttg ggtgactttg
     1381 taaaaagcag cgacaatcag ggtgttgtga aagaatatta tataaagcga tttggcaata
     1441 atacgccagc acctaactcg aaaattcctg ttcaatgaaa ccaattaaaa taatcttttg
     1501 cctgctttgt tttaatattt taatcagttg gcatgaggcg gttaagtttc gaaaagtttt
     1561 attgtatagg catatatcaa ttcaaatccc tcatgaattt gaacgaaaac ctttgcaaaa
     1621 agaaatgtat aactaccaag ttttaaaaac aagccgtttt ggaaataaga gaaatacatc
     1681 gcttttgttg attgatgttt atgacaccag ctatcgtggt aatgacagga tagatagcac
     1741 ttttatggaa tattgtaagc aaactttgaa atcaaagcaa aatccctcag ttgaattctt
     1801 aactaccaat gtgaaatcaa cacaagatat cagcataggc ttttttagct actcgtacat
     1861 tgaaagtaaa gagaaacaat atggggcgca ggcctatatt aagtgcttaa acagggagct
     1921 tttacatg
//
LOCUS       DATIQF010000368         3047 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_158050,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000368 DATIQF010000000
VERSION     DATIQF010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158050"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1145)
                     /locus_tag="VLL95_06125"
     CDS             complement(<1..1145)
                     /locus_tag="VLL95_06125"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSR38474.1"
                     /translation="MKKMWSLLTGALLLSLLSIAQTSAITGKVTDARNGNPIEGASIL
                     LKGQRTGASTRADGSFSINAPQGAVLIVSSVGYRTQEVTASNGVANVSLEPISENLTD
                     VVVVGYGTQKRATLSGSQVQLKNADLTRRQVSSTSQVLQGLAPGVTVQQQSGRPGADG
                     ASVRIRGESSILGNSNPLVVIDGLQMPNTTGLDALNQIDPNAIESITVLKDAASTAIY
                     GNRGAAGVILVKTKRATKEGLKLSYNSFISKQDFTSIPARVSAVDHMELSNLAERNRT
                     GNPAATVFPQSLIDKYKNNPADNFEIIDTDWLNEVLTNSGTMQNHNVQLVAAGEKFNV
                     FSSFTFFDQQGLIQNNSFRRYDLRVNPEYKVSKYLTLTGNLAYTSSTT"
     gene            complement(1186..>3047)
                     /locus_tag="VLL95_06130"
     CDS             complement(1186..>3047)
                     /locus_tag="VLL95_06130"
                     /inference="COORDINATES: protein motif:HMM:NF024240.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSR38475.1"
                     /translation="TFLYQNCFGTSTGTGDGTGGTAAAIASARAGAKTILVEEGPWLG
                     GMISAAGVTCTDGNHNLPSGLWNEFRNHIYTVYGGPKAVATGWVSMTQFEPHVSDSIW
                     KAMAGREKNLTVLYGWQFTKAVVANQKVNGAVFKNATGKTLTVSAFATIDATELGDVM
                     ASAKVPFDIGMEAGSVADENVGITASNNIVQDLTWVAVLKDYGARADCTIVKPTGYDP
                     NEFDGACTNFYKNKSLKAPSVDAKKMLDYGRLPNGKYMINWPNAGNDTYLNVVELSPA
                     QRQMELEKAKQTTLRFVYFIQHELGFRNLGLADDEFPTADRLALMPYHREGRRLQGLV
                     RMNIRHIAEPFTYGDPLYRTGVSVGDYPIDHHHKKNPAAPQHLDFYPVPSYSIPLGAL
                     IPRQTKGLVVAEKGISVSNVANGTTRLQPVVILTGQAAGTLAALSALKKLDPKAVPVR
                     SVQKELLNNGAYLMPYYDVKPGDPHFVAIQQAGASGVLKGTGIPYQWANQTWFYPDST
                     VIKNVFANDFRHFYEMPWKQSDPLLWQDATELVWKAGQKWKTPAVVKFASAAGFSEWV
                     QQQSGSWKLNTPQPNAPISRRELAVLLYHTFNPFMASAVNHEGRYASKSISNK"
BASE COUNT          676 a          743 c          799 g          829 t
ORIGIN      
        1 gttgtgctgc tggtgtaggc aaggttacct gtcagcgtaa ggtatttgct cactttgtat
       61 tcaggattca cccgaagatc atagcggcgg aaactgttgt tttgtatcag gccttgctga
      121 tcgaaaaagg tgaaagaaga aaatacattg aacttttcgc cagccgctac cagttgcacg
      181 ttgtggttct gcatggtgcc gctgttggtc agaacttcat tgagccagtc ggtatcaatg
      241 atctcgaagt tgtcggccgg gttgtttttg tacttatcaa tcagtgattg agggaataca
      301 gtggctgcag ggtttccagt tcggttgcgt tcagccaggt tgctcagttc catgtgatca
      361 acggcactta cccgagccgg aatggaggtg aaatcctgct tgctgatgaa gctgttgtag
      421 ctcagtttca agccttcttt ggtagcccgc ttggtcttca ccaaaatgac accagcggcg
      481 ccacggttac cgtaaatggc agtagaggct gcatctttca gcacggtgat gctttcgatg
      541 gcgttggggt ctatttggtt caaggcatcc aatcctgtgg tgttgggcat ttgcaaaccg
      601 tcaattacca ccagcgggtt gctgttaccc aggatagaac tttcgccgcg aattcttaca
      661 gaggcaccat cagcacccgg acgacccgat tgttgctgta ctgtcacacc tggtgccagg
      721 ccttgcaata cctgggatgt gcttgatacc tgcctgcggg tgaggtcggc atttttaagt
      781 tgcacctggg agccactcaa cgtagctctt ttttgtgtgc catagcccac caccaccacg
      841 tcggtgaggt tttcgctgat tggctccagc gatacattgg ctacgccatt gctggcagtc
      901 acttcctgtg tacggtagcc aacgctggat acaatgagca cagcaccctg cggtgcatta
      961 atggaaaaag aaccatcagc acgggtagag gcaccggttc tttgtccttt caatagaatg
     1021 ctggcgcctt caatggggtt gccatttcgg gcatcagtta ccttaccggt aattgcggag
     1081 gtttgcgcta tgcttagcaa ggaaagcaac aacgcccccg taagcaagct ccacattttt
     1141 ttcatagcag tgttgttttg attgaataaa aaaggttgtg aactattatt tatttgaaat
     1201 tgactttgaa gcatatcggc cttcatgatt tacagcgctg gccatgaagg ggttgaaggt
     1261 gtgatacagc aataccgcca gttcgcggcg ggagatggga gcgtttggct gaggtgtatt
     1321 caacttccat gagcctgatt gctgctgcac ccattcggaa aatcctgctg ctgaagcgaa
     1381 cttaacaaca gcgggggttt tccatttttg accggctttc caaaccaact cagtggcatc
     1441 ctgccacaag agcggatcgc tttgtttcca tggcatttcg tagaaatgcc tgaagtcgtt
     1501 ggcaaaaaca tttttgataa cggtgctgtc ggggtagaac caggtttgat tggcccactg
     1561 gtatggtata ccggtgcctt tcagtacacc ggatgctccg gcttgttgta tggccacaaa
     1621 gtgcgggtca ccgggtttca catcgtagta gggcatcagg taagcgccgt tgttgagcaa
     1681 ctccttttgc actgaacgaa cgggcacggc cttcggatcc aattttttta gggcactcag
     1741 ggctgccagc gttcctgctg cctggcctgt caatatcact acaggctgca gtcgggtggt
     1801 accgtttgcc acattggata cgctgatgcc tttttcagcc accaccaatc cttttgtttg
     1861 acggggaata agcgctccca ggggaatact ataggaagga acagggtaga agtcgaggtg
     1921 ctgtggggca gccggattct ttttgtgatg atgatcgata ggataatcgc ctaccgaaac
     1981 acctgttcga tacagcgggt cgccataggt aaatggctca gctatgtggc gaatgttcat
     2041 gcgcaccagc ccttgcagtc ttcttccttc cctgtggtag ggcatcaatg ccagccggtc
     2101 ggcagtagga aattcatcat ccgcaagacc aagattcctg aatcctaatt cgtgctgaat
     2161 gaagtacaca aaacgcaggg tggtttgctt tgctttttcg agttccattt ggcgctgggc
     2221 cggagaaagt tctaccacat tcagataagt atcgttgcca gcattgggcc agttgatcat
     2281 gtatttgcca ttgggcagcc tgccgtagtc cagcattttt ttagcatcta cggaaggggc
     2341 cttcagactc ttgttcttgt agaagttggt gcaggcgccg tcaaattcat tcggatcata
     2401 gccagtgggt ttgacgatgg tgcaatctgc cctggcacca tagtctttta gcacggctac
     2461 ccatgtcagg tcctgcacaa tgttgttgct ggccgttatg ccaacgtttt catctgcaac
     2521 agaacctgct tccatcccaa tatcaaaagg cactttggct gatgccatca catcgcccaa
     2581 ctcagtggca tcaatggttg caaaggcgga aacggtaagt gttttgcccg ttgcattttt
     2641 aaaaacggcg ccattcactt tctggttggc tacaacggcc tttgtaaact gccagccata
     2701 cagtacagtc aggttttttt ccctgccagc catcgctttc caaatgctat cgcttacatg
     2761 gggttcaaat tgtgtcatgc tgacccaacc agtggctact gccttggggc cgccatacac
     2821 tgtatatatg tggttacgaa attcattcca caagccagag ggcaaattat ggttcccatc
     2881 tgtgcaggtg acgccggcgg ctgagatcat gcctccgagc cagggacctt cctctaccaa
     2941 aatggttttg gcaccagcac gggcactggc gatggcagcg gctgttccac cggtaccatc
     3001 gccagtgccc gtgctggtgc caaaacaatt ttgatagagg aaggtcc
//
LOCUS       DATIQF010000369         1759 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_249142,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000369 DATIQF010000000
VERSION     DATIQF010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1759
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249142"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..557)
                     /locus_tag="VLL95_06135"
     CDS             complement(<1..557)
                     /locus_tag="VLL95_06135"
                     /inference="COORDINATES: protein motif:HMM:NF015427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PCRF domain-containing protein"
                     /protein_id="HSR38476.1"
                     /translation="MSLSPGFWDDNKRATGIMKEIKNNEFWVDLFNRVETAVEDFEVL
                     FEFWKEGEESEENVKAAFDLAEAAIEEAEFKSTLNQPEDELPAVLQINSGAGGTESQD
                     WAQMLARMYKMYGEKQGWTVTELDWTDGDGAGIKTATFQFDGPFAYGFLKAENGVHRL
                     VRISPFDSNARRHTSFASVYVYPLV"
     gene            775..1551
                     /locus_tag="VLL95_06140"
     CDS             775..1551
                     /locus_tag="VLL95_06140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38477.1"
                     /translation="MKQLFAFFLFGIFSLHGISQNTTDSVTIGSAVVKFQQHCAIKQP
                     GISWVHVHENETTAVATANLLIDSLGKGCFVTWQHSGNRYVTYSLNGQDYKFDPNRIY
                     TPKGLEATLKANGAFTPEGFEAAQQLASLFIAKYVDSNKLIVALHNNSDNGGLHIKSY
                     LPGGEYGNDASQVYVNDAEDIDDFFYTTDQRIFDYLKSKGFNILLQNNATVTDDGSLS
                     VYCGYKGMVYLNIEAQLGHLEEQKRMMLAVYQMIDDLFKE"
     gene            1548..>1759
                     /locus_tag="VLL95_06145"
     CDS             1548..>1759
                     /locus_tag="VLL95_06145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38478.1"
                     /translation="MMSAQNFKELSVAVATLHGKGSIIAAAFEEWHWRVLEIPVDTNA
                     FGTFPGEVERTLPPMETALAKIEAAIG"
BASE COUNT          430 a          471 c          410 g          448 t
ORIGIN      
        1 tcaaccaacg ggtagacata cacactggca aacgaggtat gcctgcgggc attgctgtcg
       61 aagggtgaaa tgcgaaccaa ccggtgcacc ccattttctg ccttcaaaaa gccgtaggca
      121 aaggggccat cgaattgaaa agtggcggtc ttgatgccag caccatcgcc atcggtccag
      181 tcaagctcgg tcacggtcca gccctgcttt tcgccgtaca tcttgtacat acgggccagc
      241 atctgcgccc agtcctgact ttcggtacca ccggcgccgc tgtttatttg caacactgcc
      301 ggcagttcat cttcgggctg gttcagggtg ctcttgaatt cggcttcctc aatggcagcc
      361 tccgccaggt cgaatgcggc ttttacattc tcttccgact cctcgccttc tttccagaat
      421 tcgaaaagca cctcaaaatc ttccacagcc gtttccaccc ggttgaaaag atccacccag
      481 aattcgttgt tcttgatttc tttcatgatg ccggtggcac gcttgttatc gtcccaaaaa
      541 cccggcgaga ggctcaactg tttgtcgttg tcaatcttgg cacgtcggtt ttcgacgtca
      601 aagaaacctc ctcaggacac tcacacggtc cctcatatcc ttaagttgct ctattgtcat
      661 agtggcgcaa aagtaagggc taaaaacttt cgtctctccc aggttttatt ttcttttagg
      721 atatggcgcc gcagcccgaa aacaagcttt ccgctttctc cctactttca ccccatgaaa
      781 cagttgttcg cgtttttcct gttcggcatt ttttccttgc atggcatttc ccaaaacact
      841 accgattcgg taaccatcgg ctctgccgtg gtcaaattcc agcaacattg tgccatcaaa
      901 cagccgggta tcagttgggt gcatgtgcac gaaaatgaaa ccaccgcggt tgctactgcc
      961 aacctgctca tcgatagcct gggcaaaggt tgttttgtga cctggcagca cagcggtaat
     1021 cgctatgtaa cctattcgtt aaacgggcag gattacaaat ttgatcccaa ccgcatttac
     1081 acccccaaag gtttggaggc caccctgaaa gccaatggcg cttttactcc ggaaggattt
     1141 gaggcggccc aacagttggc ttcacttttc attgcaaaat atgtggatag caacaagctg
     1201 attgtggcct tgcacaacaa cagcgataat ggaggccttc acatcaagag ctatttgccc
     1261 ggtggcgaat atggcaacga tgcatcgcag gtgtatgtga acgacgcgga agatatcgat
     1321 gacttcttct acactacgga ccaacgcatt ttcgattacc tcaaaagcaa agggttcaac
     1381 attctgctgc aaaacaatgc caccgttacc gacgacggat cgctgagtgt gtattgcggc
     1441 tacaaaggaa tggtgtacct caatattgaa gcgcaactgg gacacctgga agaacaaaag
     1501 cgcatgatgc tggctgttta tcaaatgatt gacgacttgt tcaaagagtg atgtctgcgc
     1561 agaatttcaa agaattgtct gtagccgtgg ctacccttca tggcaaggga tcgatcattg
     1621 cggccgcttt tgaagaatgg cattggcgag tgttagaaat acctgtcgac accaatgcat
     1681 tcggcacttt ccccggtgaa gtggaacgca ccttgccacc catggaaaca gccctcgcta
     1741 aaattgaggc agccattgg
//
LOCUS       DATIQF010000370         1806 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_81954, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000370 DATIQF010000000
VERSION     DATIQF010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81954"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            162..>1806
                     /locus_tag="VLL95_06150"
     CDS             162..>1806
                     /locus_tag="VLL95_06150"
                     /inference="COORDINATES: protein motif:HMM:NF040138.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HSR38479.1"
                     /translation="MIQTTCQAADSVLVNVLPSPALSFTNAGDCSGETITFTPFTGWP
                     PALESTLSWKWRFNDAGSTPVNPDSSLAQIATHIFNAPGTYNVQLNTRTPAGCTSTVT
                     QPVVIKVGTAAGFSVVNKGNLAYCIPVKLVQKVAGGMSGVTNIYPDYPSSAKVSLSGI
                     PVLNDTVTIDYKALGIPNGRSKYIIKWENIESAGCISVKYDTITLDPNPAIRFTALSP
                     VCVNTNTFLVTSAKDTMGVAGKGWYQGNGIDSAGNFNPLLAGVGTHSIKYTFQSNYGC
                     QGSASQNIVVNPVIPIDFIVNNRNALCHKIPVNLTQNANGGVPGKSTIYFDYPSSTAK
                     VEFPTSVPAKGTNIVLDYSAAGIPSGKPSYIVRWENLTPQGCSNFKQDTIVVNPSPSV
                     NFSALAAACVNASPYIFTAAREVTGISGKGWYQGPGVDSIGNFNPSIAGIGTHSMKYT
                     FRTNAGCRDSAAQNMVVNAIIPVDFSVLNRNALCYNPTVDLVQNANGGITGTSTIYLD
                     YGSAATNVSIGPNIPVKGTVIKLDYRSAGITQGKPNHIIR"
BASE COUNT          481 a          452 c          400 g          473 t
ORIGIN      
        1 gtgtccccgt ccaattgggt gaacctgcta tacccgggat tggttaccaa tggtcgccgg
       61 catcaaattt gaatgatccc aatattgcca ctccgctctt ctccaaaatc aatacatcca
      121 gttccacaac tggtgattgg gtgactttga caacaacgag tttgattcag actacttgcc
      181 aggccgctga cagcgttttg gtaaatgtgt taccatctcc agcattgtct ttcaccaatg
      241 ccggcgattg ctctggtgaa accatcacat ttaccccttt cactggttgg cctccggccc
      301 tggaatcaac actgagctgg aaatggagat ttaatgatgc cggatccacc cctgtaaatc
      361 ctgattcttc attggctcaa atcgccaccc acatctttaa tgcgcctggc acctacaatg
      421 ttcaacttaa caccagaaca cctgcaggtt gtacatccac agttacgcag cccgttgtga
      481 tcaaggtggg taccgccgct gggttttcag ttgttaacaa gggcaatttg gcttactgca
      541 tcccggtaaa gctggtgcaa aaagtggcag gtggcatgtc aggtgtaacc aacatttatc
      601 ccgattatcc aagctctgcc aaggtttcac tgtcggggat acctgtactc aatgatactg
      661 taactattga ctacaaggca ctgggtattc ccaatggaag atcgaaatac ataatcaaat
      721 gggagaatat tgaatcagct ggctgtatat cggtgaagta cgacactata acacttgatc
      781 ccaaccctgc catccgtttt acagcattat cgcccgtttg cgtcaataca aatacgtttt
      841 tggtcacctc cgcgaaggac actatgggtg tagcgggtaa aggctggtac cagggcaatg
      901 ggattgattc agcaggcaat tttaatccgt tgcttgctgg ggtaggtact cattccatca
      961 agtatacttt tcaatctaat tatggctgcc aagggtcagc ctcacagaac atagtcgtca
     1021 acccggtaat ccccattgat ttcatcgtga ataatcgaaa tgcgttgtgc cacaaaatac
     1081 ctgtgaacct cacccaaaat gccaatgggg gagtgccggg caaaagcacc atttattttg
     1141 attacccgtc atccacggcc aaggtggaat ttccaacatc tgttcctgcg aaaggcacaa
     1201 acatagttct tgattacagt gcggcaggaa ttccttccgg aaagccttca tatatcgtac
     1261 gatgggaaaa cctgacccca caagggtgtt ccaatttcaa gcaggacacc atagtggtta
     1321 acccaagccc gtctgtgaat ttcagcgcat tggctgctgc ttgtgtcaac gccagcccat
     1381 acatttttac ggcggccaga gaagttaccg gaatatcggg taaagggtgg taccagggac
     1441 ccggtgtgga ttccattggg aatttcaacc cttctattgc tggtatcggc acccacagta
     1501 tgaaatacac tttcaggacg aatgcgggct gccgagactc tgcggctcaa aatatggttg
     1561 tcaacgccat tatccctgtt gatttcagcg tgctcaacag gaatgctttg tgttacaatc
     1621 caacagtcga cctggtacaa aatgccaatg gaggaataac tggtacatcc actatttatc
     1681 ttgattatgg ttccgcagcg acaaacgttt caattggacc caatattccg gtaaaaggaa
     1741 ccgtcataaa actcgattat cgaagtgccg gcattaccca gggaaaaccc aaccatatta
     1801 tccgtt
//
LOCUS       DATIQF010000371         2696 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_5952, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000371 DATIQF010000000
VERSION     DATIQF010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2696
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5952"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(280..663)
                     /locus_tag="VLL95_06155"
     CDS             complement(280..663)
                     /locus_tag="VLL95_06155"
                     /inference="COORDINATES: protein motif:HMM:NF024759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HSR38480.1"
                     /translation="MHENQLATIAVDICYRLHTQLGPGLLESVYESAFAYELEKRQVP
                     YTRQQGIPTQYEDVVLDVGFRADIIMDQKLIIEIKSIERIDRVHHKTLLTYLALSGIK
                     FGMLVNFNVEKIKDGIHRKILGQLD"
     gene            750..>2696
                     /locus_tag="VLL95_06160"
     CDS             750..>2696
                     /locus_tag="VLL95_06160"
                     /inference="COORDINATES: protein motif:HMM:NF013755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HSR38481.1"
                     /translation="MKKLYLLDAFALIFRAYYALIRNPRITTTGRNTNAQFGFTNTLI
                     DLINKEKPSHIAVCFDTAAPTERHTDFTDYKANRQEAPEDLLAAVPDIKRIIEGFNIP
                     VLAVDGYEADDVIGTVAWQAADLGYEVYMVTPDKDYGQLLTKENVFIYKPAAFGNGPE
                     ILKAEDICTKWGIDNVAQVIDMLGMMGDAVDNIPGIPGVGEKTAAKLLKQYGSMEAVL
                     ADADNIKGALGEKIRNGKELAVMSKKLATIITSVPVQFHEEDFKLGDWNKEALKEVFT
                     ELEFKTLGRRILGADFDAVAGMAQQQGVQQDLFGNVVETNNGDKKAEAAREEEVQIEV
                     AHNIGNTPHTYHLLDNADAINDFLTKALQQTELCFDTETTNIDANLAELVGMSFAFTP
                     HEAYYIPCPANRAATDALLAQLQPLFAKVDITWIGQNIKYDLLLLKWYGIELAGPVYD
                     TMLAHYVAEPEGRRSMDLLAAQYLGYQPVSITELIGKKGKEQGNMRDVEIEKIKDYAS
                     EDADITLQLKHKLAPLVKDKEVERVLNEAENPLVKVLTDMEFEGIRIDEGFLNDYSKL
                     LQADASAAEKRVYENAGVKFNLASPKQLGEVLFDKLKLDPSAKKTKTGQYQTGEDVLL
                     KLAAKGHNIVEDILTFRELTKLKST"
BASE COUNT          763 a          701 c          662 g          570 t
ORIGIN      
        1 ccaagaacac gaagactcac caagacaacc tctttgtgct tctttgtgtg cttagtggga
       61 aaagaatatc ccacaaagaa cacgaagtct caccaagaca acctctttgt gcttctttgt
      121 gcgcttagtg ggaaaaaaat atcccacaaa gaacacgaag actcaccaag acaacctctt
      181 tgtgcttctt tgtgtgctta gtgggaaaag agtatcccac aaagagcacg aagtgacact
      241 aagaaatgat agtggtcatc gttgtaaaat aggcatttat caatccagtt gtcccaggat
      301 tttgcggtga atgccgtctt tgattttttc tacattgaaa ttgaccagca ttccaaactt
      361 tattccgctt agtgccaggt aggttaggag cgttttgtga tgcacccggt ctatgcgctc
      421 aatcgatttt atctcaatga tcagtttctg atccatgatg atatcagccc ggaaccccac
      481 atccagtaca acatcttcgt attgagtggg aattccttgc tggcgggtat aaggcacttg
      541 tcttttctcc agttcataag caaatgccga ctcatatacg ctttcaagca atccggggcc
      601 cagctgtgtg tgaaggcgat aacaaatgtc gacggcaatg gtagccagtt gattttcgtg
      661 catgggtttg cgatttgaac cattaaaata atcagcttac tttgatttcc cttctccata
      721 ttgcatcttc accggttctg taagtacaca tgaaaaaact atatctcctc gacgcgtttg
      781 ccctcatttt ccgggcctat tacgccctca tccgcaaccc ccgcatcacc accaccgggc
      841 gcaataccaa tgcacaattc ggatttacca ataccctcat cgatctcatc aacaaggaaa
      901 aaccgtcgca catcgcggtg tgcttcgata ccgcggcgcc caccgaacgg cataccgatt
      961 ttaccgacta caaagccaac cggcaggaag cccccgaaga cctgctggcg gccgtgcccg
     1021 atatcaaacg catcatcgaa ggcttcaaca tcccggtgct ggccgtggat ggttacgaag
     1081 cggatgatgt gatcggcacc gtggcctggc aagccgccga cctgggctat gaagtgtaca
     1141 tggtgacacc cgacaaagac tatggccaat tgctcacgaa agaaaatgtg ttcatctaca
     1201 aacccgctgc ctttggcaat ggtcccgaaa tactgaaggc cgaagacatc tgcaccaaat
     1261 ggggtatcga taacgtagca caggtgatag acatgctggg catgatgggc gatgccgtag
     1321 acaacatacc cggcataccc ggcgtgggcg aaaagaccgc tgccaaactg ctgaagcaat
     1381 acggcagcat ggaagccgtg ctggccgatg ccgacaacat caaaggcgcc ctgggcgaaa
     1441 agatccgcaa cggcaaagag ctggccgtga tgagcaagaa actggccacc atcatcacca
     1501 gtgtgccggt gcaattccat gaagaagatt tcaaactcgg tgactggaac aaggaagcgt
     1561 tgaaagaagt gttcaccgaa ctcgaattca aaacactggg ccgccgcata ctcggcgccg
     1621 actttgatgc ggtggccggc atggcgcagc aacaaggcgt gcagcaagac ctgtttggca
     1681 atgtggtgga aaccaacaat ggcgacaaaa aagctgaagc tgccagagaa gaggaagtgc
     1741 aaatagaagt ggcgcacaat attggcaaca cgccgcacac ttatcatttg ctcgataacg
     1801 ctgatgcaat caacgatttc ctcacaaaag cactgcagca aaccgagttg tgttttgata
     1861 ccgaaaccac caacatcgac gccaacctgg ccgagctggt ggggatgagt ttcgctttca
     1921 ccccgcatga ggcgtattac attccctgcc cggccaatcg agccgctacc gatgccctgc
     1981 tggcccagct gcaaccgctg tttgcgaaag tggacatcac ctggatcggg cagaacatca
     2041 agtacgattt gctattgctc aagtggtatg gcattgaact ggccggtccc gtgtacgaca
     2101 ccatgctggc acactacgtg gcagaacccg aaggccgccg cagcatggac ctgctggccg
     2161 cccaatattt aggctaccag cccgtaagca ttaccgagct cattggcaaa aagggaaaag
     2221 agcagggcaa catgcgggat gtggaaatag aaaagataaa agactatgcc tccgaagatg
     2281 ccgacatcac gctgcaactg aaacacaaac tggcgccgct ggtgaaagac aaagaggtgg
     2341 agcgggtgct gaacgaagcc gagaacccct tggtgaaagt gcttactgac atggagtttg
     2401 aaggcatacg cattgatgaa ggctttttga acgactacag caaactgttg caggccgatg
     2461 cgtcagcagc agaaaaacgg gtgtatgaaa atgccggcgt gaagttcaac ctggcatcac
     2521 ccaaacaact gggagaagtg ctgttcgata aactcaaact cgatccatcg gccaagaaaa
     2581 ccaagaccgg acagtaccaa accggtgaag atgtattgct gaaactggct gccaagggtc
     2641 acaacattgt agaggacatc ctcactttcc gcgaactcac caaactgaag agtacc
//
LOCUS       DATIQF010000372         1973 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_36252, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000372 DATIQF010000000
VERSION     DATIQF010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1973
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36252"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..625
                     /locus_tag="VLL95_06165"
     CDS             <1..625
                     /locus_tag="VLL95_06165"
                     /inference="COORDINATES: protein motif:HMM:NF019552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="heparinase II/III-family protein"
                     /protein_id="HSR38482.1"
                     /translation="YAILRDAETISFIRCGSHKDRPAQADNLHLDVWIGEQNVLHDAG
                     SYQYNTTPDLVKYFMGTTSHNTVMLGHHDQMLKGSRFIWYHWTQAKDMQVGETEEYFT
                     FRGNISCFGYLASGIVHERVVKKKKGANEWWVEDSISNKPSHLPMRQLWHKAGDILSI
                     TVKNKQGENVALEKEDGWISRYYGVKQPATMRVAETKDQKLTAHIVA"
     gene            622..1860
                     /locus_tag="VLL95_06170"
     CDS             622..1860
                     /locus_tag="VLL95_06170"
                     /inference="COORDINATES: protein motif:HMM:NF024968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSR38483.1"
                     /translation="MKILLLHQYFLEEDDPGGSRWNEMTRSWTDIGHEVTVIAGMMHY
                     NGHQKRNEYKGIYFKKKQQGKVPVWRCHVSESYNRSYVGRLWGYFSFMFSSLWCGITK
                     VKGDFDVIIVTSPPLFVGISGYVISRFKRMPLVFEVRDLWPESAIDTGVLKNKWIIKL
                     AYAIESFIYRKSKLINVLTPAFLATLRDKKKVPKEKLIFIPNAADFSLSENLMSSFDR
                     AQFRKEHHLDGRFVITYVGAHGVANHLEQVLHAGKALEDTNVEFLLIGDGNDKARLKQ
                     MAEAMQTKNVRFVDPVPKAEVFKYILASEMGASILKRVDTFKTVYSNKTFDYMSCKKP
                     ILMAIDGVSRELVEKAQAGSYVEPENTEAYNQIIRQYLDDPERLQREGENGYRFAHER
                     FDRRVLAMEYLNHLKKMVHK"
BASE COUNT          566 a          420 c          506 g          481 t
ORIGIN      
        1 ctatgccata cttcgtgatg cagaaaccat tagctttatc cgctgtggtt cgcacaaaga
       61 ccgtcctgca caagctgaca acctgcacct agatgtctgg ataggtgagc aaaatgtgct
      121 gcacgatgca ggttcttacc aatacaatac cacaccagac ctcgtgaaat atttcatggg
      181 gaccacctcc cacaatacgg tcatgctggg ccatcacgac caaatgctga agggcagccg
      241 gttcatttgg tatcactgga cccaggcaaa ggatatgcag gtaggcgaaa cggaagagta
      301 ttttactttt cggggcaata tctcctgctt tggctacctg gccagtggaa ttgttcatga
      361 gcgtgtggtc aaaaagaaaa aaggtgccaa tgaatggtgg gttgaagatt ccatatccaa
      421 taaaccttca catttgccta tgcggcagtt gtggcacaaa gccggcgaca tcctcagtat
      481 aactgttaag aataagcagg gagaaaatgt ggcactggag aaagaggatg gatggataag
      541 caggtactac ggagtgaagc agccagcaac catgcgggtg gctgaaacga aagatcaaaa
      601 attgacagcg catatagtgg catgaaaatt ttactgctac atcaatattt tctggaagaa
      661 gatgatcctg gcggttcccg gtggaatgaa atgacccgga gctggacaga cattgggcac
      721 gaagtgacgg taattgccgg catgatgcat tacaatgggc accagaagcg caacgaatac
      781 aaaggcattt atttcaaaaa gaaacaacag ggcaaagtac ctgtgtggcg ctgtcatgta
      841 tctgagtcat ataacagaag ttatgtgggc cgcttgtggg gttatttttc cttcatgttc
      901 tcatcgttgt ggtgtggtat caccaaggtg aagggcgatt ttgatgtgat cattgttact
      961 tcgccgcctt tatttgtagg tatttccggg tatgtaatat cccgcttcaa acgcatgccc
     1021 ctcgtatttg aggtacgcga cctttggccc gaatcggcca tcgatacagg ggtactgaaa
     1081 aataagtgga tcatcaaatt ggcttatgcc attgaatcct tcatttatcg caaatcaaaa
     1141 ctcatcaatg ttttgacgcc tgcttttctg gcaacgcttc gcgacaagaa aaaagtgccg
     1201 aaggaaaaac tcatattcat tcccaatgcg gctgattttt cattatcaga aaacctgatg
     1261 agttctttcg atcgggcgca gttcaggaaa gagcaccatt tggacggcag gtttgtgatc
     1321 acctatgtag gagcgcatgg cgtggccaat caccttgagc aggtgttgca tgcagggaag
     1381 gccctggagg ataccaacgt cgagttcttg ctgataggtg atggcaacga taaagcacgc
     1441 ctcaaacaga tggctgaggc catgcaaaca aagaatgttc gctttgtaga ccctgtaccc
     1501 aaagccgaag tgtttaaata catactggca tcagaaatgg gggcctccat tctgaaaagg
     1561 gtggacacat tcaagactgt ttacagcaac aagacattcg actacatgtc gtgtaaaaag
     1621 ccgatcctga tggccataga tggtgtatcg agggaattgg tggagaaagc gcaagccggc
     1681 agttatgtgg aaccggaaaa caccgaagct tacaatcaaa tcatcaggca atacctggat
     1741 gatcctgaaa gactgcaaag agagggagag aatgggtatc gctttgccca cgaacgcttt
     1801 gaccgcaggg tgttggccat ggagtatctc aaccatctga aaaaaatggt tcacaagtag
     1861 aagactgtgt ttcagtcagc gccagatttt catgtatagc aatttcatca agcccttgtg
     1921 tgaccgcgta gtggcactga tcgcgttggt agtgctgtcg ccggtaatac tga
//
LOCUS       DATIQF010000373         2558 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_21277, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000373 DATIQF010000000
VERSION     DATIQF010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2558
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21277"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..847)
                     /locus_tag="VLL95_06175"
     CDS             complement(<1..847)
                     /locus_tag="VLL95_06175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38484.1"
                     /translation="MPALTQRIALIAIAFLALMSFSKKELHLEIIQSDTLRYPEEKHF
                     RNVRQLTFGGDNAEAYFSYDNKWLIFQKTNPKEGIMCDQMFIGKVPGPGEKFEPKMVS
                     TGKGRTTCGAFTKDGKHVIYASTHLGSSDCPPVPDRSKYGNKYIWPLYDSYDIFMADL
                     NGKIVKQLTKSKGYYAEATLSPDGKKMVYTSTKSGDLELWIMDLKSGKEKQVTDMLGY
                     DGGAWYSPDGTKLIWRASRPTTEAAIKEYKSLLAENLVAPTNMEVWIANADGSNPRKV
                     TSYGQA"
     gene            1078..1788
                     /locus_tag="VLL95_06180"
     CDS             1078..1788
                     /locus_tag="VLL95_06180"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR38485.1"
                     /translation="MLSSMINNIRNYPDSIGLVDKLIDTLSNRGDIDGAAAWCDSLVI
                     RDSVNNFIYTLVKADLFRGAKKYDAAMAAYKAYLAKKPEEPLVFMTLANTMAEAGSAE
                     TLDFCNQVWQRFPTPQTRTGLSYIRGVYFNTKKQFAEARRWLDSTIRYDYSFADAYLE
                     KGYSWYDEGNFQEAARTFGKLTEVSPKNADGWYWLGKSYDTLHLAEKAIAAYQRALMY
                     DGSIAEAAAAIERLSPSK"
     gene            1883..2530
                     /gene="rpe"
                     /locus_tag="VLL95_06185"
     CDS             1883..2530
                     /gene="rpe"
                     /locus_tag="VLL95_06185"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HSR38486.1"
                     /translation="MAIIAPSLLAADFLHLNRELEMFDQSEADWLHLDVMDGRFVPNI
                     SFGLPVIESLRKATKKPFDVHLMILEPEKYAEAFKNAGADILTVHVEACPHLHRNIQQ
                     IKSLGMKAGVAVNPSTPVNVLADIIHDIDMVCLMSVNPGFGGQHFIHHTLQKIRQLRM
                     MIDEKDLKVDIEIDGGVGEKNAATILEAGATVLVAGNSVFRAKDPLAAIAHLKSL"
BASE COUNT          631 a          646 c          627 g          654 t
ORIGIN      
        1 tggcctgccc gtaggaagtc actttacggg gattgcttcc atccgcattg gcaatccaaa
       61 cttccatatt ggtgggagcc accaggtttt cagccagcaa acttttgtat tcttttattg
      121 ccgcctcggt ggtagggcgt gaagctctcc agatcagctt ggtaccatcg gggctgtacc
      181 aggcgccacc atcgtagccc agcatgtcag tcacctgctt ttccttgccg cttttcaaat
      241 ccatgatcca cagttcaaga tcaccactct tggtgctggt gtacaccatt ttctttccat
      301 cggggctcag cgtggcttcg gcataatagc cctttgattt ggtcagttgc tttacaatct
      361 ttccattcag atcggccatg aaaatgtcgt acgaatcgta cagaggccaa atgtatttgt
      421 tgccatattt ggagcggtcg ggcactggtg gacaatcgct gctgccaaga tgggtactgg
      481 cgtaaatgac atgcttgcca tctttggtaa aagcaccaca agtggttctg cccttgccgg
      541 tgctcaccat tttgggttcg aacttttcac caggaccggg cactttacca ataaacatct
      601 ggtcgcacat gatgccttcc ttgggattgg tcttttggaa aatgagccat ttattatcgt
      661 agctgaaata ggcttccgca ttatcgccac caaatgtgag ctggcgaaca ttgcgaaaat
      721 gtttctcctc agggtagcgc agagtatcgg attgaatgat ctcgagatgg agttcctttt
      781 tactgaaaga catcagtgcc aggaaggcaa tggctatgag ggcaatacgc tgtgttagtg
      841 caggcatgaa aaaaatttgc gcaaaagtat tggccgcagc ctttaggaaa gaagcccaat
      901 tgtcatggaa ttgtcattag aatggggcaa ccttcacttt ttggatagaa tggtccggct
      961 atttttgctt cgatgcggac aattttcaac tcctctattg cagctttcct tcttttggtc
     1021 gggattgggt gcactgaacc tggcaaggaa aaaaatggcc agccccatgc cgatcctatg
     1081 ctcagttcca tgatcaacaa catcaggaat tacccggatt cgatcgggct ggtcgacaag
     1141 ctcattgata ccctgtccaa ccggggcgat attgatggtg ccgcagcctg gtgtgattcg
     1201 ctggtcattc gcgactcggt caacaatttc atttacaccc tggtgaaggc cgatctcttc
     1261 cgcggggcca aaaaatacga tgccgccatg gcggcctaca aagcatacct ggctaaaaaa
     1321 ccagaagaac cgctggtatt catgaccctt gccaacacca tggcggaagc tgggtcagcc
     1381 gaaacgcttg acttctgcaa ccaggtctgg cagcgctttc ccacgcctca aacacgcacc
     1441 gggctgtctt acatccgcgg ggtttatttc aataccaaaa aacaatttgc cgaagcccgc
     1501 cgatggctcg acagcaccat ccggtacgat tattcgtttg ccgatgccta cctcgaaaaa
     1561 ggctacagtt ggtacgacga gggtaatttt caggaagcag ccaggacctt tggaaaactc
     1621 accgaagtga gccccaaaaa tgcggatggc tggtactggc ttgggaaaag ctacgatacc
     1681 ctccacctgg ctgagaaagc catcgctgcc taccagcggg ctctgatgta cgacggcagt
     1741 attgccgaag ccgctgcagc catcgaacga ctgagcccat ccaaataaca gttgcacaac
     1801 ctgttgatcc tggcatcaca gattttttga acccatcacc aagcacccat tacttttgcc
     1861 gcattaaaaa attgcctgcc tcatggccat aattgctccc tccttgcttg ctgccgattt
     1921 tttgcatctc aatcgggaat tggaaatgtt tgatcagtcg gaagccgact ggttgcacct
     1981 tgatgtaatg gatggccgtt ttgttcccaa tatcagcttc gggctgccgg tgatcgagag
     2041 cctgcgcaag gctaccaaaa agccttttga tgtgcacctg atgatcttgg aaccggagaa
     2101 atatgcggaa gccttcaaaa atgcaggtgc tgatattctg accgtgcatg ttgaagcctg
     2161 tccgcatttg catcgcaata ttcagcaaat caaaagcctg ggtatgaaag ctggcgtggc
     2221 ggtgaacccc agcaccccgg tgaatgtact ggctgacatc attcacgata tcgacatggt
     2281 gtgcctcatg agtgtgaacc ccggttttgg tggccagcat ttcattcacc acaccttgca
     2341 aaaaatcagg caactgcgca tgatgattga tgaaaaagat ttgaaagttg atatagaaat
     2401 tgatgggggt gttggcgaaa agaatgccgc taccatatta gaagccggcg ccacggtact
     2461 agtggcaggt aactcagtgt tcagggcgaa agatcccctg gccgccattg cccatttgaa
     2521 atcactataa aaaaatcccc ggtcatgccg gggatttt
//
LOCUS       DATIQF010000374         3699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_188479,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000374 DATIQF010000000
VERSION     DATIQF010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3699
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188479"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1301)
                     /locus_tag="VLL95_06190"
     CDS             complement(<1..1301)
                     /locus_tag="VLL95_06190"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8/S53 family peptidase"
                     /protein_id="HSR38487.1"
                     /translation="MPIDLILELPGIGAKTAGGSVSKKQILQSLKTAGIPVTGIAEIK
                     SVKPKKGKAVFAGGAKRLVANTSIHASEINPWDVVHMAMNAGKKSSVRFAEPDVEQHF
                     VVAPKVQAPYSNVTAKSFGKPGEAGKVDPDWPPAQNTIWHLEDEYSQLRSARNAVANQ
                     GAIIRMAHLDTGYAAHHSIVPDSVKNNPLQRNFVEGEDASNATDTLIDGMLKMPGHGT
                     STLGLLAGSKVKLKTDNGTFNDYLGGAPFAEVICCRIAPTVVLMKTSAFAQALQYLVQ
                     LCNNGTPIHVLSMSMGGAPSKAWADAVNAAYDAGITLVTAAGNHFNGLPTRHLVYPAR
                     FGRVIAACGVTHDFKPYRTKLLGEMQGCYGPDRNMKNALAAFTPNTPWASVSSGGISF
                     GGAGTSSATPQIAAAAAIYYRKYYQQLQLLQPWQRVEAIRNA"
     gene            1553..3100
                     /locus_tag="VLL95_06195"
     CDS             1553..3100
                     /locus_tag="VLL95_06195"
                     /inference="COORDINATES: protein motif:HMM:TIGR00368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HSR38488.1"
                     /translation="MLVKTFGSAVMGVSAVSITIEVYVNNQGNPGSVIVGLPDNAVKE
                     SMQRVESAIKANGYKMPRTRVVVNLAPADIKKSGTAFDLPIAVGLLGATEQLQNTDAF
                     KDYIIMGELSLDGEVRPIKGALPIAIQARKEGFKGFIVPKQNAREAAIVNNLEVYGVQ
                     HISEVVDLLEGVNTIPATVVDTRDEFYHSQYHFDIDFSDVKGQDNIKRSLEIAAAGGH
                     NVILIGPPGAGKTMLAKRLPTILPPLTLQEALETTKIHSVAGKLPEHATLISKRPFRS
                     PHHTVSDAALVGGGGNPQPGEISLAHNGVLFLDELPEFKRTVLEVMRQPMEERRVTIS
                     RAKIALDFPASFMLVASMNPCPCGYYNHPEKECTCPPGAVQKYLNKISGPLLDRIDLH
                     VEVTPVPFNELSSAQASEKSSVIRERVMRARDIQLERYKDENGIYCNAQIGTQLMHAH
                     CVLNTVCANLLKAAMEKLNLSARAYDRILKVSRTIADLAGSTDIRPEHVAEAIQYRSL
                     DREGWAG"
     gene            3331..>3699
                     /locus_tag="VLL95_06200"
     CDS             3331..>3699
                     /locus_tag="VLL95_06200"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HSR38489.1"
                     /translation="MKILWHYLKPYQKLVAFSLLLAAVNQTFSLIDPWIFGKMIDKFA
                     NHASSYTQSAFVWGVMAYLGLLVGTAMVSRIAKAFQDYFSSVVIQKFGASIFTEGLRH
                     SMRLPFNEFEDQRSGETLSIL"
BASE COUNT          898 a          985 c          939 g          877 t
ORIGIN      
        1 gcatttcgaa tggcttccac ccgttgccat ggctgcagta attgcaactg ctggtagtat
       61 ttacgataat agatggctgc cgccgccgcg atttgcggtg tagccgacga cgtgccggct
      121 ccaccaaaac tgataccacc actacttaca ctggcccatg gggtattggg tgtaaatgct
      181 gccaaagcat ttttcatatt tctgtcggga ccgtaacagc cctgcatttc gcccaacagt
      241 ttggttcggt aaggtttaaa atcatgcgtg acaccgcaag ctgcaatcac ccttccaaac
      301 cgggcgggat ataccaggtg ccgcgttggc aacccgttga aatgattgcc tgctgccgta
      361 accaaggtga tccctgcatc gtaggctgca ttcacggcat cagcccaggc tttggaagga
      421 gcgccaccca tgctcatgct caatacatgg ataggtgtgc cattgttgca caattgcacc
      481 aggtattgca atgcctgtgc aaaggccgat gttttcatca gcaccacagt gggtgcaatt
      541 cgacagcata tcacttctgc aaagggagca ccacccaggt aatcgttgaa tgtaccgttg
      601 tctgttttca gtttcacttt gctcccggct aataatccca gagtactggt tccatggccg
      661 ggcattttca gcatgccatc aatcagcgtg tcagtagcat tggaggcatc ctctccctcc
      721 acgaaatttc tttggagtgg gttgtttttc accgagtccg gcactatgct gtgatgcgca
      781 gcgtaaccgg tatccaggtg cgccatgcga atgatagcac cttgattggc cactgcattg
      841 cgggccgatc gcaattgcga atactcgtct tccaggtgcc agatggtatt ttgtgccggt
      901 ggccagtcgg ggtccacttt tccagcctcc cccggtttgc caaacgactt ggcagtcacg
      961 ttgctgtaag gtgcctgcac tttgggagcc actacgaaat gctgctccac atcgggctcg
     1021 gcaaatctta ctgatgattt tttgccggca ttcattgcca tgtggactac atcccatggg
     1081 tttatttcag aagcatgaat gctggtattg gccaccagcc ttttagcccc accggcaaaa
     1141 acggccttcc cttttttggg ctttactgat ttgatttcag caatacccgt tactggaata
     1201 ccggctgttt tgagagattg aagaatttgc tttttggaaa cgctgccacc ggcagttttt
     1261 gccccgatac cgggcaattc aagaatgagg tcaatgggca taagtaaagt gtttgcaggc
     1321 ctgctacagc ccgggtgtga cgaaatgcgt tactccgacc gtttggcaat tggacggtac
     1381 ccgccatcag ccgtttctat caagttatgt aaaatattat gaataatgca agcctgggag
     1441 cccgctatta ttggtgataa acagaaggca tttggctgac gagattcgcc cccacaaaaa
     1501 aaccatggct acatatgtac gcgaaaagag gtgttcatgt tatttttagc gtatgctcgt
     1561 aaaaacattt ggcagtgcag taatgggcgt aagtgccgtc tccatcacca ttgaggtata
     1621 tgtcaacaac cagggcaatc ccggctcggt gattgtgggc ctgccagaca atgcagtgaa
     1681 ggaaagcatg cagcgtgtgg aaagtgccat taaggccaat ggctacaaaa tgccccgcac
     1741 ccgggtggtg gtgaacctgg cccccgccga catcaaaaag agcggcactg cttttgacct
     1801 gcccatagca gtaggtctcc tcggtgctac cgaacaattg caaaacaccg atgcgttcaa
     1861 agattacatc atcatgggtg aactgagcct cgatggtgaa gtgcgtccca tcaaaggcgc
     1921 tctgcccatt gccatccagg cccgcaaaga aggtttcaaa ggttttattg ttcccaaaca
     1981 aaatgcaagg gaagctgcca ttgtaaataa cctggaagtg tatggtgtgc agcacatttc
     2041 ggaggttgtg gatttgttgg aaggcgtcaa taccattccc gccacggtgg tggatacccg
     2101 cgatgaattc taccattcac agtaccattt cgatatcgac ttcagcgatg taaaaggaca
     2161 ggacaatatc aaacgaagcc tggaaatagc agctgctggc ggacacaatg tgatcctgat
     2221 tggcccaccc ggagcgggca agaccatgct cgccaaaaga ctgcccacca ttttaccgcc
     2281 gcttacgttg caggaagcac tggagaccac taagatccac agcgtggcgg gcaaactgcc
     2341 ggaacatgca acgctcatca gcaagcggcc ctttcgcagc ccgcaccaca cggttagcga
     2401 cgccgccctg gttggcggtg gtggcaatcc gcaacccggc gaaatttcgc tggcgcacaa
     2461 tggcgtattg tttttggatg aactgcccga attcaaacgc acggtgctcg aagtgatgcg
     2521 acaacccatg gaagaaagac gcgtcaccat cagccgggcc aaaatagccc tcgactttcc
     2581 ggcatcattc atgctggtgg ccagcatgaa cccctgccct tgcggctatt acaaccatcc
     2641 cgaaaaagaa tgcacctgcc cgccaggtgc cgtgcagaaa tacctgaaca aaataagcgg
     2701 tcccttgctc gatcgcatag acctgcacgt ggaagtgacg cccgtacctt tcaacgaatt
     2761 gtcgtcggca caagccagtg aaaaaagcag tgtcattcgt gaaagggtga tgcgtgcccg
     2821 ggatatacaa ttggaacgct acaaggatga aaacggcatt tactgcaatg cccaaattgg
     2881 cacccaactc atgcatgccc attgcgtgct caataccgtt tgcgccaacc tgctgaaagc
     2941 cgccatggaa aagctgaacc tcagtgcccg ggcatacgat cgcattctga aagtgagccg
     3001 caccattgcc gaccttgccg gcagtaccga catcaggccc gagcatgtgg cagaagccat
     3061 ccaataccga agcctcgacc gcgaaggttg ggcaggatga gacatatcga agtacgaggt
     3121 acgaagtggg aagtacgagg tgggaagtac gagggactgc tgggatcagc ccgccatttt
     3181 caataccggc ctgcctttgg tcacgccggt ccgccgttta atcaggctat tcgcctgtca
     3241 gttcggcatg ttttctcctt tgcaccatta ttgatacatt gcctgtcctg agcccgaagc
     3301 caatagaagc cgggcgtcca tctatcgtat atgaaaatac tttggcacta cctcaaaccg
     3361 tatcaaaagc tggtggcttt ttccttgctg ctggcagctg ttaaccagac cttctccctg
     3421 atcgatccct ggatttttgg taagatgatc gacaagtttg ccaaccatgc ttccagctac
     3481 acacaaagcg cttttgtttg gggcgtaatg gcctacctgg gtttgctggt gggcacagcc
     3541 atggtcagcc gcattgccaa ggccttccag gattacttca gcagcgtggt cattcagaaa
     3601 tttggcgcca gcatttttac cgaagggttg cgtcacagca tgcggttgcc gttcaatgaa
     3661 tttgaagacc aacgcagcgg cgaaacactc agcatcctt
//
LOCUS       DATIQF010000375         2183 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_142994,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000375 DATIQF010000000
VERSION     DATIQF010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142994"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            110..1213
                     /gene="murG"
                     /locus_tag="VLL95_06205"
     CDS             110..1213
                     /gene="murG"
                     /locus_tag="VLL95_06205"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: protein motif:HMM:TIGR01133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HSR38490.1"
                     /translation="MSAIRLIIAGGGTGGHIFPAVAVANAIKELQPNAEILFVGANGK
                     MEMEKVPQAGYPIKGLDIAGFNRSHWWKNISLPVKLLKSFLQVRSIFNEFQPQAAFGV
                     GGYSSFPVLRLAQAKGIPTFLHESNAFAGKSNMMLGRKATRVFVAAEGMEKFFDAAKI
                     EISGNPVRKEIATISMSREAAIQSFGLDASKPVLLVVGGSLGARSVNNAVKAGLDKMQ
                     QAGLQLIWQTGKPFAEEAKTAVAGRTGTWQNDFITNMAAAYAAADIVVSRSGAMSVTE
                     LCMAGKPVVFVPFPFAAEDHQTANAMALVKEGAAVLVKDEDAASNLVDTVLALAADND
                     KRIAMSGKIKKMARYDADKLIAKRILDSIHADA"
     gene            1200..>2183
                     /locus_tag="VLL95_06210"
     CDS             1200..>2183
                     /locus_tag="VLL95_06210"
                     /inference="COORDINATES: protein motif:HMM:NF019850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HSR38491.1"
                     /translation="MLTLKDIKRIYFIGIGGIGMSAIARFFLSRGVKVSGYDKTETAL
                     TQQLTREGAVIHFADDIALLDKEVQLVVFTPAIPSSHAMLNWYRDNGYQVVKRSDVLQ
                     IITEDSFNICVAGTHGKTTMSTMIGHILRHSGYGCNVFLGGISVNYNTNFWSSSNDVC
                     VVEADEYDRSFLKLSPDIAVVSAMDADHLDIYGTLENMQEGFVEFARRIRPGGLLIRK
                     HPLHKLDEAGVSRMVIYSLTGDDVHHAVVDSEFDDHDHDHHHAPADIYATEIRVKDGG
                     YLFNVHIGPHIVQDLRLKVGGLHNIENMLPAVAVAHSLRISDELIRQGVASY"
BASE COUNT          564 a          516 c          621 g          482 t
ORIGIN      
        1 gcttcagcgt aggcattctg ctgagtgttg cccgcaacat agaagaacag gaaggaaaaa
       61 atatggccac tgcagatgca gtgagtgccg atgaaaagga gggggtagca tgagtgcaat
      121 aagactgatc atagcaggcg gcggcactgg cgggcacatc ttcccggcag ttgcggtggc
      181 caatgccatc aaagaactgc agccgaatgc tgagatactg tttgtggggg ccaatggaaa
      241 aatggaaatg gagaaagtgc cgcaggccgg ctaccccatc aaaggattgg atatcgctgg
      301 tttcaaccgt tcgcactggt ggaagaacat ctctctgcct gtcaaattgc tgaagagttt
      361 cctgcaggtt cgatccatct tcaacgaatt tcagccgcag gccgcttttg gcgtgggtgg
      421 ctacagcagc ttccccgtgt tgcgcctggc gcaggcaaaa ggcattccca ctttcctgca
      481 cgaaagcaat gcctttgctg gtaaaagcaa tatgatgctg ggcagaaagg ctaccagggt
      541 ttttgtagcg gcggagggta tggagaagtt ctttgatgct gcaaaaattg agatcagcgg
      601 taacccggtg cgcaaagaga ttgcaaccat cagcatgagc agggaagctg cgatccagtc
      661 gtttgggctg gatgcttcga agccggtgct gttggtagta ggcggcagcc tgggtgcccg
      721 aagtgtgaat aatgctgtaa aggccgggct cgacaaaatg cagcaggccg gattgcagtt
      781 aatatggcaa acagggaaac cttttgcaga agaagcaaag acggctgtcg ccggcagaac
      841 aggaacctgg cagaacgatt tcatcaccaa catggcagca gcctatgcag cggctgatat
      901 cgtagtgagt cgctctggcg ccatgagtgt aacggaattg tgtatggccg gcaaaccggt
      961 ggtatttgtg ccctttcctt ttgccgccga agatcatcaa accgccaatg cgatggcact
     1021 ggtgaaagaa ggtgccgctg tgctggtaaa agatgaagac gctgccagca acctggtgga
     1081 caccgtgctg gcactggcgg ctgacaacga caaaagaatt gccatgtcgg gaaaaataaa
     1141 aaagatggcc cgctacgatg cagacaaact aattgctaaa agaattctgg actcgataca
     1201 tgctgacgct taaagacata aaacgcatct acttcatcgg catcggtggc attggcatga
     1261 gtgccattgc acggttcttc ctgtcgagag gcgtgaaagt aagcggctac gacaaaacag
     1321 aaacggccct tacccagcaa ttgaccaggg aaggagcggt aatccatttc gcagatgata
     1381 ttgccttgtt ggacaaagag gtgcaactgg tggtgttcac gcctgccatt ccttcttcgc
     1441 atgccatgct caactggtac cgcgacaatg gctaccaggt ggtgaagcgc agcgatgtat
     1501 tgcagatcat cactgaagac agtttcaata tttgcgtagc gggtacgcat ggcaaaacca
     1561 ccatgagtac catgattggt catatccttc gtcattcagg atatggatgc aatgtattcc
     1621 tgggtggcat ttcggttaac tacaatacca acttctggag cagcagcaac gatgtttgtg
     1681 tagtagaggc tgatgaatac gaccgcagct tcctcaaatt gtcgcctgat atcgccgtgg
     1741 taagtgccat ggatgccgac cacctggata tatacggcac gctggaaaat atgcaggagg
     1801 gttttgtgga attcgcacgg cgtattcgcc ccggtggttt gctgatccgc aagcatcctt
     1861 tgcataaact ggatgaagcc ggcgtcagcc gcatggtcat ctacagcctc accggcgacg
     1921 atgtgcatca tgccgtggtg gatagcgaat tcgacgatca cgatcacgac catcaccatg
     1981 ctcccgctga catctatgct actgagatcc gggtgaaaga cggtggttac ctcttcaatg
     2041 tgcacatagg tccgcacatc gtgcaggatt tgcgattgaa agtaggtggc ctgcataata
     2101 ttgagaacat gcttccagcc gtggccgtgg cacacagcct gcgaatcagc gatgaactca
     2161 ttcgccaggg agtggccagc tac
//
LOCUS       DATIQF010000376         2219 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_279549,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000376 DATIQF010000000
VERSION     DATIQF010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279549"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..752)
                     /locus_tag="VLL95_06215"
     CDS             complement(<1..752)
                     /locus_tag="VLL95_06215"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR38492.1"
                     /translation="MSTRKPLLSFWQIINMNVGFFGIQYSFGLQQSAVNPIYDMLGAS
                     PDEIPILNLAGPMTGLLVQPIIGALSDKTWSPRFGRRKPYFFIGAIMCSIALFFYPFS
                     SSLWMAAGLLWILDAGNNTAMEPYRAFIADKLDPAQQPTGFQAQSFFTGFGQTLANVS
                     LFIFPMIFIGTTGKLPTWVYASFFLGSFCSIASIWWSSRTTPEIPPTAEELEHMRAAP
                     RSVLAPFREIAGAIKDMPAIMWQLALVYLFQW"
     gene            798..>2219
                     /locus_tag="VLL95_06220"
     CDS             798..>2219
                     /locus_tag="VLL95_06220"
                     /inference="COORDINATES: protein motif:HMM:NF013125.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lamin tail domain-containing protein"
                     /protein_id="HSR38493.1"
                     /translation="MRPSHQQKLVACFCLIVCTIVCSENILAQARYSVVISEIMADPT
                     PQVALPNAEWLELKNPSTSAINLQGFRLQKPGSSPSGPMPAFVLQPDSSVIVCTASQV
                     PALSVFGNAISVTSFPSLGNDGDQLILLSPNGSTMHAVAYDISWYKNDLKAQGGWSLE
                     MIDSQQPCSGAANWTASVDAKGGTPGKTNSVQRNNPDASGPRLLYAFANTANSVTLTF
                     DEPLDSSKAAAAANYTISDGIGISTARPQAPFFNTVSLLLNNSLAAGKIYTVTANALT
                     DCSGNGINQAFASTRLGLNANADSLDVVVNEILFNARPQEEDYVELYNRSNKVLNLRQ
                     LTLANRSSSNGQLGSFVSLSPDDRPLFPGDFMAFTVNADILKRSYTVFKPMQVIQLPS
                     LPSFPDDKGWAVVLNQQGKIVDELAYSEKWHFALLNNDEGVALDPRKGARRGIAGAAC
                     PTRWLCDQRGCRLGRRRPSRSARE"
BASE COUNT          572 a          590 c          582 g          475 t
ORIGIN      
        1 taccactgaa acagataaac tagggccagt tgccacataa tagccggcat gtctttgatg
       61 gcaccggcaa tttctctaaa gggcgccaat acactgcgtg gggcggcccg catgtgttcc
      121 agttcttcgg ccgtcggtgg tatttcgggc gtggtgcgag agctccacca gatagaagcg
      181 atggaacaga atgaccccag gaaaaaagaa gcatacaccc aggttggcag cttgcccgtg
      241 gtgccaataa agatcatggg aaaaatgaac agcgaaacat tcgccagtgt ttggccaaag
      301 ccggtgaaaa agctttgtgc ctggaagccg gtgggttgtt gtgcaggatc cagtttatcg
      361 gcaataaaag cccggtaagg ttccatggca gtgttgttgc cggcatcaag tatccataac
      421 aaaccggctg ccatccacag gctgctgctg aaggggtaga aaaataatgc gatgctgcac
      481 atgatggcgc caatgaagaa ataaggtttg cgccgcccaa aacgggggct ccatgtttta
      541 tcgctcaaag cgccaatgat gggctgtacc agcaagcctg tcatgggtcc tgcgaggttg
      601 agaatgggaa tttcatcggg gctggcaccc agcatatcgt agatgggatt gacggcactt
      661 tgctgcaaac caaagctgta ctgaatgcca aaaaaaccga cattcatatt gatgatttgc
      721 caaaaagaca acaatggttt cctggtactc ataggctatt gatggaaaga attctgaata
      781 tagtcactcg aattttaatg cgaccaagcc atcagcaaaa actcgtcgcc tgtttttgcc
      841 tgatcgtttg cacaatcgtt tgcagtgaga acattctggc gcaagccagg tacagcgtgg
      901 ttatttcaga aataatggcc gacccgaccc cgcaggtagc actgcccaat gcagagtggc
      961 tggaactgaa aaaccccagc accagcgcta tcaacctgca aggcttccga ctacaaaaac
     1021 ctggcagttc ccccagtggt cccatgcctg cttttgtgct gcagcccgac agcagcgtca
     1081 tcgtttgtac ggcttcgcag gtgccggccc tcagcgtgtt tggcaacgcg atcagcgtga
     1141 ccagctttcc cagcctcggc aatgatggtg accagctcat tttgctgtcg cccaatggca
     1201 gcaccatgca tgcagtggcg tacgacatca gctggtacaa gaatgacctg aaagcacaag
     1261 gcggctggag cctggaaatg atcgacagcc agcagccttg cagtggtgcc gctaactgga
     1321 cggccagcgt ggatgccaaa ggcggcacac cgggtaaaac caattccgtg caacgcaaca
     1381 acccggatgc cagcggcccc agattgttgt atgcatttgc caatacagcc aactcagtga
     1441 cactcacctt tgatgaacca cttgacagca gcaaagcagc cgctgcagcc aactatacca
     1501 tcagcgatgg cattggcatc agcaccgccc ggccacaagc gccttttttc aatacggttt
     1561 ccttgctatt gaacaacagc ctggcagccg gtaaaattta tacggttact gccaatgccc
     1621 tcaccgattg cagcggcaat ggcatcaacc aggcatttgc ctccacccgc ctgggcctga
     1681 atgctaatgc cgacagtctt gatgtggtgg tgaatgaaat cctgttcaat gcaagaccac
     1741 aggaagaaga ttatgtcgaa ctctacaacc gcagcaacaa agtgctcaac ctgcggcaac
     1801 tcaccctggc caaccgcagc agcagcaacg gacagctcgg atcttttgtt tcgctgtcgc
     1861 cagatgacag gccattattc cccggcgact tcatggcatt taccgtgaac gccgacattt
     1921 tgaaaagaag ctacaccgtg ttcaaaccca tgcaggtaat tcagctgccc tccctgcctt
     1981 ctttccccga tgacaaaggc tgggcagtag tgttaaatca acaagggaaa attgtggatg
     2041 aactggccta ttccgagaag tggcattttg cgctgttgaa taatgatgaa ggtgttgcgt
     2101 tggacccacg gaaaggagcc cgtcgtggaa tcgcaggtgc tgcttgccca actcggtggc
     2161 tatgcgacca gcgcggttgt cgactgggac ggcgacggcc gagtcgatct gctcgcgag
//
LOCUS       DATIQF010000377         3863 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_218929,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000377 DATIQF010000000
VERSION     DATIQF010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3863)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3863)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3863
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218929"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..291)
                     /locus_tag="VLL95_06225"
     CDS             complement(<1..291)
                     /locus_tag="VLL95_06225"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF013323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-transferase"
                     /protein_id="HSR38494.1"
                     /translation="MNKVFENATAAVADIPDGATLMLGGFGLCGIPENCIAALVAKGV
                     RGLTCISNNAGVDDFGIGLMLKQRQVKKMISSYVGENAEFERQLLSGELEVEL"
     gene            complement(284..679)
                     /locus_tag="VLL95_06230"
     CDS             complement(284..679)
                     /locus_tag="VLL95_06230"
                     /inference="COORDINATES: protein motif:HMM:NF025494.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4296 domain-containing protein"
                     /protein_id="HSR38495.1"
                     /translation="MKKLAFVWFWGIGAFWAIGCGDRSQQLTDEQMKRLLWDLSRAEA
                     FQTYYLNKDTTTNKEKIADTLYGKIFALHKVSSEAFFASLQEYKKDPVRFKILMDSVN
                     AYGNRLREQGFLEANDTTKTKKQLQPTNE"
     gene            complement(687..1586)
                     /locus_tag="VLL95_06235"
     CDS             complement(687..1586)
                     /locus_tag="VLL95_06235"
                     /inference="COORDINATES: protein motif:HMM:NF027445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4835 family protein"
                     /protein_id="HSR38496.1"
                     /translation="MGLVVYTVPALHAQELNAKVTIITSRITTQVDRRIFNTLQTQLI
                     NLLNNRKWTEDNFKQQEKIDCNFILNLDRQVETNVFSASLIIQAARPIFNTNYNSPII
                     NWQDNDVVFRYVEFQPVEFNESRLSGTDALNINLPAIFAFYANLIVGLDYNSFAIKGG
                     DPYFKRALFIVNNAPSTRNVSGWSQFDGLRNRFWLAENLMNNRYTLIHDAIYQYYRNS
                     LDYFYEDEQRARDEMMNVLNLLNSFNTSNQNTAILQFFMQSKANEIIEIFRRATPDQK
                     QRAVAILEKIDVTNAKRYREALK"
     gene            complement(1616..2806)
                     /gene="coaBC"
                     /locus_tag="VLL95_06240"
     CDS             complement(1616..2806)
                     /gene="coaBC"
                     /locus_tag="VLL95_06240"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HSR38497.1"
                     /translation="MLAGKKIILGITGSIAAYKAIYLTRLLVKNGAVVKVVMTPAAAE
                     FASPLVLETLSKNRVHVGLSDSTTWANHVELGRWADLMIIAPASCNTIGKMAAGICDN
                     LLLAVYLSATCPIWVAPAMDEDMWRHPATQENLTKLRNWGINTLPVGSGELASGLTGE
                     GRMQEPEEIVALVNLYFESSQPLQGKKAIVTAGPTYEPLDPVRFIGNHSSGRMGIEIA
                     TELMRRGAETTLVLGPSSLEVPVGLTVIHVQTAGEMFEAIHSRFAEQDVAVMAAAVAD
                     YRPADIAPDKIKKKDDTLQLTLVKNPDILKYCGENKGEAQVVVGFALETSNESAHAKE
                     KLVSKKADLMVLNSLRDEGAGFGGTTNKVSIFDKEGKEYHYPVESKKMVAKWIVDLIA
                     EKIA"
     gene            complement(2905..3246)
                     /locus_tag="VLL95_06245"
     CDS             complement(2905..3246)
                     /locus_tag="VLL95_06245"
                     /inference="COORDINATES: protein motif:HMM:NF013365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HSR38498.1"
                     /translation="MSKLRRQLSVNTNNTVETKNLLEIKGKTGNLYESISIVGKRANQ
                     INISLREELHNKLEEFASHTDSLEEILENKEQIEISRAYERMPNPALLATQEFLEDKI
                     YFRKNDQDLFS"
     gene            complement(3215..>3863)
                     /gene="bamD"
                     /locus_tag="VLL95_06250"
     CDS             complement(3215..>3863)
                     /gene="bamD"
                     /locus_tag="VLL95_06250"
                     /inference="COORDINATES: protein motif:HMM:NF024915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HSR38499.1"
                     /translation="MKGSAEYENVYYKWAYCNYYQKDYLNAENIFKGFLENFPNSSRV
                     EEIEYMRAYCYFKMSTKAELDQTPTTKAINYLQTYANLHPSSPKAKEAADLIDGLRVK
                     LETKDYKSAMLYYNMGYFKAAATAFNELMFNFPDSQKGDEYKLMVIRSWFKYAEKSYE
                     YKQMERFEKVLNECADFVDRFPDSKLAGEVAKLKSQSENNIKTLQNEQAKASTER"
BASE COUNT          964 a          940 c          787 g         1172 t
ORIGIN      
        1 gagttccact tccaattctc cactcaacag ttgtctttca aactcggcat tttcgcccac
       61 gtaagaggag atcatttttt tcacctgccg ttgtttcagc atcagcccaa taccgaagtc
      121 atccactccg gcattgttcg aaatacaagt tagcccacgc accccttttg ccaccagggc
      181 agcaatgcag ttttccggga tgccacacaa tccaaatccg cccagcataa gggtagctcc
      241 gtcagggata tctgctacag cagcggttgc attttcaaac actttattca ttggttggct
      301 gcaattgttt ttttgtcttg gtagtatcgt tcgcttccaa aaaaccctgt tccctgagcc
      361 gattgccata ggcattcacc gaatccatga gaatcttgaa gcgaacggga tccttcttat
      421 actcctgcag agaggcaaaa aatgcttcgg aggaaacctt gtgcaaggca aatattttgc
      481 cgtaaagcgt atccgcaatt ttctctttgt tggttgtggt atccttattg agataataag
      541 tctggaaggc ttccgccctc gatagatccc acaaaagcct tttcatttgc tcatcggtga
      601 gttgctgcga tcggtcgcca cagccaatcg cccaaaatgc cccaattccc caaaaccata
      661 caaaggcaag ttttttcatt ttcacctcac tttagtgctt cacgatatct cttcgcgttg
      721 gtcacatcta tcttttccaa aatagcaact gccctttgct tctgatcagg cgttgcccgt
      781 ctgaaaattt caatgatctc atttgccttg ctctgcataa aaaactgcag tatcgcggta
      841 ttttgattgc tggtattgaa actgttcagc aggttgagca cattcatcat ttcatcacga
      901 gccctttgtt cgtcttcgta aaaataatct aggctgttgc gatagtattg ataaatggca
      961 tcgtgtatca gcgtgtacct gttgttcata aggttttctg ccagccagaa cctgttgcgc
     1021 aacccatcaa attgtgacca acctgaaaca ttgcgtgtgc tgggggcatt gtttacaatg
     1081 aacaacgccc ttttgaagta tgggtcgccg cctttgattg caaaactatt gtagtcgagg
     1141 cccacaatga ggttggcata aaaagcgaaa atggcgggca aattgatgtt cagcgcatct
     1201 gttccgctca gcctgctttc attgaactcg acgggctgaa attcaacata cctgaacacg
     1261 acgtcattgt cctgccagtt gatgatggga gaattgtaat tggtattgaa tattggtcgt
     1321 gctgcctgaa tgataagcga agcactaaag acattggttt ccacctgcct gtcgaggttc
     1381 agaatgaaat tacaatcaat cttttcctgc tgcttgaaat tatcttctgt ccacttacgg
     1441 ttgttgagca ggttaatgag ttgggtctga agtgtgttga agatgcgcct gtctacctgg
     1501 gtagtaatcc tggaagttat gatcgtcact tttgcattca gttcctgcgc atgcagcgca
     1561 ggtaccgtgt acacaaccag gcccattaaa accaagcatt tttgccagaa tcgattcatg
     1621 caattttttc tgcgattaag tcaactatcc attttgctac cattttcttt gattccacgg
     1681 gataatggta ttcctttcct tccttgtcaa aaatagacac tttattggtg gtgccaccaa
     1741 agcctgctcc ttcatcacgc aacgagttaa ggaccatcaa atcggccttt ttcgacacca
     1801 atttttcttt cgcatgtgcc gactcatttg atgtttccaa agcaaagcca accactacct
     1861 gagcttcccc cttattttca ccgcaatact tcaggatatc ggggttcttt accaatgtca
     1921 gttgcagggt gtcatccttt tttttgattt tatccggtgc aatgtccgct ggccgataat
     1981 cagcaactgc tgcagccatg acagctacat cctgttccgc aaaacgacta tggatggctt
     2041 caaacatttc gccggctgtt tgcacgtgaa ttacagtcaa gcctacagga acttccaagg
     2101 aggaggggcc aagtaccaga gtggtttcag ctcccctgcg cattaattca gttgctattt
     2161 caatgcccat tcttccactg gaatggtttc cgataaaacg taccggatca agtggctcat
     2221 aagtaggacc tgccgtaaca atggcttttt tgccttgcag tggttgagat gattcaaaat
     2281 agaggttgac aagcgcaaca atttcttccg gttcctgcat gcgtccttca cctgtaagtc
     2341 cactggccag ttcaccactg cccacaggta aggtatttat tccccaattt ctcagtttgg
     2401 tgaggttttc ctgggtcgcc ggatgtcgcc acatgtcttc gtccattgct ggtgccaccc
     2461 atatagggca ggtggcacta aggtagactg caagcaacaa attatcgcag atcccggcag
     2521 ccattttgcc gattgtattg caggaggcgg gcgcaatgat catcaaatcg gcccaacgcc
     2581 ccagttcaac atggttggcc caggtggtac tatcagacag gcccacatgt accctattct
     2641 tactcaatgt ttccaatacc aatggcgatg caaattcagc agctgcgggt gtcatcacca
     2701 cctttactac cgcaccattc tttacgagga gacgggttag gtaaatggct ttgtatgcag
     2761 cgatgctgcc tgtaatacca agaattattt ttttgccggc aagcacagta caaaattgat
     2821 tagagcttgt tttaaaaaac gaaacgatag ctaatgtagc tatcgttgaa aatacgattc
     2881 caaaaccaga aaactcctga ggatttagct aaacaaatcc tgatcgtttt tgcggaaata
     2941 gattttgtct tcgaggaact cctgcgtagc cagcaaagcc ggattaggca tacgctcata
     3001 ggcccttgaa atttcaattt gctccttgtt ttccaggatt tcctcaaggc tgtctgtatg
     3061 cgaggcaaac tcttccagtt tattgtgcaa ttcctctctc aaagaaatgt tgatctggtt
     3121 ggcacgcttg cctacgatag aaatagactc gtacagattt ccggtcttgc ctttaatctc
     3181 cagcagattc ttggtttcta ctgtattatt ggtgttaacg ctcagttgac gccttagctt
     3241 gctcattttg aagagttttt atattattct cagattgact tttcagtttt gctacttccc
     3301 cggctaattt actatcagga aagcgatcga caaagtccgc acactcattc aatacttttt
     3361 cgaatcgctc catttgcttg tactcatagc ttttttcagc gtacttaaac caggacctga
     3421 taaccatcaa cttatattca tccccttttt gagaatcagg gaaattgaac attaactcat
     3481 taaaggcagt tgccgccgcc ttaaaatagc ccatgttgta gtataacatg gcacttttat
     3541 aatcctttgt ttccagcttc acccgcaagc catctatcaa atcagctgct tctttggcct
     3601 ttggagaact ggggtggagg ttggcatacg tctgcaaata attgatcgct ttggttgtag
     3661 gggtttggtc caactcagcc tttgtcgaca tcttgaaata gcagtaggcc ctcatgtatt
     3721 caatttcctc tacccggctg ctgttcggaa agttctccaa aaatcccttg aaaatattct
     3781 cagcattcaa gtagtctttc tgatagtaat tgcagtaagc ccacttataa tacacatttt
     3841 catattccgc cgaccccttc atc
//
LOCUS       DATIQF010000378         4042 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_127801,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000378 DATIQF010000000
VERSION     DATIQF010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4042
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127801"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..573
                     /locus_tag="VLL95_06255"
     CDS             <1..573
                     /locus_tag="VLL95_06255"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:NF015113.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HSR38500.1"
                     /translation="GIPYVEVPDEAAFYGPKIDVQIWSAIGREFTLATNQVDFAQGRR
                     FKLEFTTRDNQTDTPLIIHRAPLGTHERFIGFLLEHYAGKFPVWLAPQQVKVLPISDK
                     FLPYAQEVAKGMKKAGIRATVDDRNEKIGKKIRDAELTRVPYMFIVGEKEMNEQAVSV
                     RRQGRGDLGIQPVSAITEQLRSEIAERKSD"
     gene            643..1209
                     /gene="infC"
                     /locus_tag="VLL95_06260"
     CDS             643..1209
                     /gene="infC"
                     /locus_tag="VLL95_06260"
                     /inference="COORDINATES: protein motif:HMM:TIGR00168.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HSR38501.1"
                     /translation="MAFPPRNRGFNPRFKQPEPEHRINERIRVPQVRLVGDNVTPGVY
                     PTQEALKIAQDLELDLVEISPNADPPVVKAIDYKKFLYEKKKKEKEMKANAKQSEVKE
                     IRFTPGTDDHDFDFKAKHAEKFLKDGNKVKCYVQFRGRAIMFQDRGQVLLLKFAERLA
                     EVGALEGLPKMEGKRMIAMFAPKSSKKK"
     gene            1279..2283
                     /locus_tag="VLL95_06265"
     CDS             1279..2283
                     /locus_tag="VLL95_06265"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSR38502.1"
                     /translation="MSHYLHFFSIAIPLLQACTLKSEAQYFLRPGIAEQRASYAQLKL
                     DPEVRFADSARLISNLQYLSTDSMEGRKTGTAGSEKARQYILSQLRQTKVNTLPGKDD
                     FLQAFPVGSLNGYNILGFIKGNDFPNSVLVVSAHYDHIGSKKGEVFNGADDNASGVSV
                     LLEAASYFSQHPPKHSIVFCFFDAEEMGLQGSRYFVDHLPEGMPVAANINFDMLSRNQ
                     NGNELFASGSLHYPQFYYLLQPLIIRHPVALLFGHDGEQPSKPGDNWTYQSDHGSFHR
                     KRIPFIYLGVEDHDDYHKATDEFEKIDKTFFLHSANLALDVVVSVDALWGTNNEKRPR
                     "
     gene            complement(2323..2718)
                     /locus_tag="VLL95_06270"
     CDS             complement(2323..2718)
                     /locus_tag="VLL95_06270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38503.1"
                     /translation="MIKFSELKPGNWVLAKNEGTWMEGVVTHVNADDGGQIEVETGVQ
                     KSWYEIEDVQALPLSEDYLLKMGFEREVMESGNVKYKHGAFRVLVGPTKRFTDFLMWY
                     REEKSHITYPMMVHQFQNRYQEMTKVPVV"
     gene            2981..3178
                     /gene="rpmI"
                     /locus_tag="VLL95_06275"
     CDS             2981..3178
                     /gene="rpmI"
                     /locus_tag="VLL95_06275"
                     /inference="COORDINATES: protein motif:HMM:TIGR00001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HSR38504.1"
                     /translation="MPKVKTNSSAKKRFKVTGTGEITFQKSFKRHILTKKSTKRKRNL
                     RKKGVVAAANTDFVKRLLRLK"
     gene            3237..3581
                     /gene="rplT"
                     /locus_tag="VLL95_06280"
     CDS             3237..3581
                     /gene="rplT"
                     /locus_tag="VLL95_06280"
                     /inference="COORDINATES: protein motif:HMM:TIGR01032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HSR38505.1"
                     /translation="MPRSVNAVASRARRKRILDQAKGFYGKRKNVYTVAKNIVEKGMT
                     YSYVGRKLKKREYRALWIARINAAVREEGLTYSTFIHKLNEKGITLDRKVLADLAMNE
                     PASFKALVEKVK"
     gene            3710..>4042
                     /locus_tag="VLL95_06285"
     CDS             3710..>4042
                     /locus_tag="VLL95_06285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38506.1"
                     /translation="MNRRIADLVQNTYTDLVNQTFDFPQEDFEVKDGYLRFNGVDLKY
                     LIDKYGTPLKISYLPKIGMQIKKAKTMFQNAFKKHRYEGQYYYCYCTKSSHFSFVVEE
                     ALKHGIHLE"
BASE COUNT         1145 a         1008 c          912 g          977 t
ORIGIN      
        1 ggaattccct atgtagaggt ccccgacgag gccgcctttt acgggccaaa gatcgacgtt
       61 cagatatgga gtgcgatcgg gcgggagttc accctggcca ccaaccaggt agactttgcc
      121 caggggcgcc ggttcaagct cgagttcacg accagggata atcaaaccga tacacccctg
      181 atcatccacc gggcgccgct gggaacccac gaacgcttca tcggcttcct gctcgagcac
      241 tatgcaggca aattcccggt gtggctggca ccccagcaag tgaaggtgct gcccatcagc
      301 gacaaattct tgccctacgc acaggaagta gccaaaggga tgaaaaaagc gggaattcgt
      361 gccaccgtgg acgaccggaa cgaaaaaatc ggcaaaaaga tacgcgatgc agaattgacc
      421 agggttccct acatgttcat tgtaggcgaa aaggagatga acgaacaagc cgtatcagtg
      481 cgcaggcagg gcaggggtga cctgggaatc caaccagttt cggctattac tgaacagctc
      541 cgttcagaaa ttgcggaaag aaagtcggat tagcatttcc cgcgaatcat ttactttgca
      601 cctattcttc accaaaaagt attattcatt taaaatttct gaatggcatt tcctccccgt
      661 aaccgaggtt ttaatccccg ttttaagcag cccgaacccg agcaccgcat caatgagaga
      721 attcgcgtac cgcaggtgcg tttggtgggc gacaatgtaa ctcccggcgt ctatccaacc
      781 caggaagccc tgaaaatagc ccaggacctg gaactggatc ttgtggaaat atcacccaat
      841 gccgatcccc cggttgtaaa ggcaattgac tataagaaat tcctttacga gaagaagaag
      901 aaggaaaaag agatgaaggc caatgccaag caaagcgagg tgaaagaaat tcgcttcacg
      961 ccgggcactg acgatcatga cttcgacttc aaagccaagc atgccgagaa attcctgaaa
     1021 gacggaaaca aggtgaaatg ttacgtgcag ttcaggggcc gtgccatcat gttccaggac
     1081 aggggacagg tactgctgct gaagttcgcc gaacgtttgg ctgaagttgg cgccctggaa
     1141 ggactgccca aaatggaagg caagcgtatg atcgccatgt ttgcgcccaa atcaagcaaa
     1201 aagaaataaa gaataaacgc ttcacaaaga gccggcctat tgcagcgccg gctctttttt
     1261 gatcccatat gtattcgaat gagccattac ctacacttct tctctattgc cattcctctt
     1321 ttgcaggcct gcacccttaa aagtgaagcc caatatttcc tgcgccccgg tattgcagag
     1381 caacgagcat cctatgccca actcaagttg gatccggaag tccgatttgc agacagtgcc
     1441 cggctgatct caaacctgca atacctgagc actgacagca tggaaggtcg caaaacaggt
     1501 actgccggga gtgaaaaggc caggcaatat atcctctccc aactgcggca aaccaaggta
     1561 aacacattgc caggcaaaga tgattttctg caggcattcc ccgtaggtag cctcaatggt
     1621 tacaacattc tgggcttcat caaaggcaat gattttccaa acagtgtatt ggtggtatcc
     1681 gcccattacg atcatattgg ctccaaaaaa ggggaggtat ttaacggcgc tgatgataac
     1741 gcctcaggcg tgagtgttct gctggaagct gcttcctatt tcagccagca ccctccgaag
     1801 catagtattg tattctgctt ttttgatgct gaggaaatgg gcctgcaggg aagccgctac
     1861 tttgtagatc acctgcctga aggcatgcca gtagcagcca atatcaattt cgatatgctg
     1921 agccgtaacc agaatggcaa tgaacttttt gccagtggca gcttgcatta tccccagttt
     1981 tactacctgt tgcagccgtt gatcattcgc caccctgtgg ccctgctatt tgggcatgat
     2041 ggagaacaac cctccaaacc cggtgacaac tggacttacc agagcgacca tggttccttt
     2101 catcgaaagc gtattccatt tatttacctg ggcgtggaag accatgacga ttaccacaag
     2161 gcaaccgacg agttcgaaaa aatagacaag accttcttcc ttcattcggc caaccttgca
     2221 ttagatgttg tcgtctctgt ggatgccctt tggggtacca acaatgaaaa acgaccccgg
     2281 taaacgggat cgtctattca agattcaatg caactttatt ctttacacta ccggcacttt
     2341 ggtcatttcc tggtagcgat tctggaattg gtgaaccatc attgggtagg ttatatggct
     2401 tttttcctcg cggtaccaca tgaggaaatc tgtaaaccgc ttggtgggcc ccaccagcac
     2461 cctgaaggcc ccatgcttgt atttcacatt accgctttcc atcacttccc tttcaaaacc
     2521 cattttcaac aggtaatctt ctgaaagagg caatgcctgt acgtcttcaa tttcatacca
     2581 ggatttttgt acgccggttt ccacctcaat ttgtccgcca tcatcggcat ttacatgggt
     2641 aaccacacct tccatccagg tgccttcatt tttggccagc acccaatttc caggctttag
     2701 ttcgctgaat ttgatcatat ggctgagttt tgtgttaagc tacaaataca ttggcaatag
     2761 aacaaattag ctttcaacgc aatagaaaag ttcaggccag ggccagcaca gttaattttg
     2821 gcatcatttt ttaaaaggat tgctcatttt ccggtctatt accctacttt tgccgcccga
     2881 ttgtggaaac ccacagttga aacattgccc aaatggctcc ataagagatt cgggtggtcc
     2941 gaatccgcca gtagggttta acactaaagt ttgaataacc atgccaaagg ttaaaaccaa
     3001 ctcaagtgcc aagaaacgtt ttaaagtaac aggcaccggc gaaatcacat ttcaaaagag
     3061 cttcaagagg cacattctca ccaaaaagtc aaccaagcgt aagcgtaacc ttcgtaagaa
     3121 aggggtagta gccgccgcca ataccgactt tgtaaaacgc ctccttcgcc tgaaataagc
     3181 aagttttgac cgcttatcag tcgagcatta tttcattaat ctaaaaatct tttgatatgc
     3241 cccgttcagt aaacgccgtt gccagccgtg cacgtcgcaa aagaatcctc gatcaagcca
     3301 agggcttcta tggcaagcgt aagaatgttt acaccgttgc caaaaacatt gtagaaaaag
     3361 gcatgaccta cagctatgta ggccgcaaat tgaaaaagcg tgaataccgt gcattgtgga
     3421 tagcccgtat caacgccgcc gttcgcgaag aaggccttac ctacagcact ttcattcaca
     3481 agcttaacga gaaaggcatc accctcgatc gtaaagtact ggccgacctg gccatgaatg
     3541 agcctgccag tttcaaagct ctcgttgaaa aagtaaaata agcttaacgc taagaaatgc
     3601 tttaaaagcc ggatgggaat ctgttccttt ccggcttttt tgtttggtcc aataaatggt
     3661 gcagaacatt acttttgtta gcaattttaa aaagcctcct cagccaaaaa tgaacagacg
     3721 cattgccgac ctggtgcaaa acacctacac tgacctggtc aatcaaactt ttgattttcc
     3781 ccaggaggat tttgaagtaa aagatggtta tctgcgcttc aatggtgtgg acctgaaata
     3841 cctgattgac aagtatggta cgccgctgaa aataagctac ctgcccaaaa taggcatgca
     3901 gataaagaag gcaaagacca tgttccaaaa tgctttcaaa aagcaccgct atgaaggcca
     3961 atactattat tgctattgta ccaaaagcag ccacttcagt tttgtagtgg aggaggcatt
     4021 gaagcatggc atccacctgg ag
//
LOCUS       DATIQF010000379         1500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_127833,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000379 DATIQF010000000
VERSION     DATIQF010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127833"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(315..1022)
                     /locus_tag="VLL95_06290"
     CDS             complement(315..1022)
                     /locus_tag="VLL95_06290"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HSR38507.1"
                     /translation="MKTFDHVDCARCEKRGESVFCNTHGEHLDDISNSKTCSVYKKGQ
                     VVFHEGGHPFGVYCVNKGKIKLSIIGDEGKEQIVRLARDGDVLGYRSMLVNERYNATA
                     TVLEDSQVCFIPREVFMRTLRSDSALSFEVMKLLSNQLREAEVKLTHLAQKPVRERLA
                     ETLLFLKETYGFEPDSTFIAVQLTREEIANLVGTATETAIRLLSELNKEKVIELSGKK
                     IAISNMRELVRIANLND"
     gene            1224..>1500
                     /locus_tag="VLL95_06295"
     CDS             1224..>1500
                     /locus_tag="VLL95_06295"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003860 - 3-hydroxyisobutyryl-CoA
                     hydrolase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HSR38508.1"
                     /translation="MYQTLLTEIKDGTLIITINRTDKLNALNKDVISELSAAVQHVYD
                     NQEIKSALITGAGAKAFVAGADISEFISMDATQGAALARLGQEMVFNK"
BASE COUNT          394 a          359 c          342 g          405 t
ORIGIN      
        1 caaggagagc ttttctgcat ccaactgatc ttctttgatt ttgctgatgc tttcaagcac
       61 gtcgtccagc gattgcctta tcggtatata ttgtttttga tcgatgtaat gacagagttg
      121 cggtggcgac aattcattca cttccaccag gtgcgaggcc aacataaaag ggtaatttat
      181 attacgaagc tatccgagcc aaccggagca gtccatgata gcactcaagg ccaaacatga
      241 tatttatcag caataaaaaa aacggagccg gctttcgcga ccccgttttc tatcggtaat
      301 gtacaccccg agccttaatc gttcaggttg gcaatgcgta ccaattcacg catattggaa
      361 atagcgattt tcttgccgga caattcaatc accttctcct tattcagttc gctcaacagg
      421 cggatggctg tttcagtagc ggtacccacc aggttggcta tttcttcgcg ggtcagttgt
      481 acggctatga aggtgctgtc gggttcaaaa ccataggttt ccttcaggaa gagcaaagtc
      541 tctgcgaggc gctcccgcac tggtttctgt gccaggtggg tgagttttac ttcggcttca
      601 cgcaattggt tgctcagcag tttcatcact tcaaaactca gtgctgaatc gctgcgcagg
      661 gtgcgcatga acacttcacg tggtatgaag catacctgcg aatcttcgag cacggtggcg
      721 gtggcattgt agcgctcatt taccagcatg ctgcgataac ccaatacatc gccatccctc
      781 gccaaacgca caatctgctc cttgccttca tcaccaataa tcgagagttt gatttttcct
      841 ttgttcacac aataaacgcc gaagggatga cctccttcgt gaaaaacgac ctgtcccttt
      901 ttgtaaacag agcaggtttt ggaattactg atgtcatcaa gatgctcgcc gtgggtattg
      961 caaaaaacag actcccctcg cttttcacaa cgggcacagt ctacatgatc aaatgtcttc
     1021 attctgggag gattggttac gaaaactggg caaagctaca tcatgaggaa caaatgctac
     1081 cttaataatg tggcttcaac aacaatttct gatttgctct tcaacttcaa cagttttgtt
     1141 tcaaaacttt tgaggcccgt ttaaacaaaa tggttttggg agataaggtg gccggcagta
     1201 ggtttgggaa aaatttgcct ggcatgtacc aaacgttgct taccgaaata aaggatggaa
     1261 cgctcatcat taccatcaac cgcactgata aattgaatgc actcaacaaa gacgtgattt
     1321 ccgaattgag cgcagcagtg cagcatgtgt acgataatca ggaaatcaag agtgcgctca
     1381 tcaccggggc tggcgccaaa gcatttgtag ctggtgccga tatcagcgaa ttcatttcca
     1441 tggatgccac gcaaggtgcg gcccttgccc gccttggcca ggaaatggtc ttcaataaaa
//
LOCUS       DATIQF010000380         2838 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_158196,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000380 DATIQF010000000
VERSION     DATIQF010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2838
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158196"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(84..1262)
                     /locus_tag="VLL95_06300"
     CDS             complement(84..1262)
                     /locus_tag="VLL95_06300"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HSR38509.1"
                     /translation="MKEVYILSAVRTPMGSFGGSLKDFSATQLGAIAIKGAIEKAGIK
                     ASDVEDVLMGCVIQANLGQAPARQAAKFAGLPNEVNCTTVNKVCASGMKAIAQAAQSI
                     LLGDAEVVVAGGMESMSNVPFYADKMRWGNKYGNVSMIDGLAKDGLTDVYDGQAMGMA
                     AELCASTCGVSREDQDAFAIESYQRSQAAWEAGKFADEVVPVPIPQRKGDPILFAKDE
                     EPFNVKFDKIPTLNPAFKKDGTVTAANASTMNDGAAALVLMSKDKAESLGLKPIAKII
                     GYADAEQAPEWFTTTPSLAVPKAVAKAGLKMEDIHYWELNEAFSVVGIENTKRMQLDP
                     ARVNAHGGAVSLGHPLGCSGARIIVTLINVLKQNNAKYGAAGICNGGGGASAMVIEAC
                     "
     gene            1596..>2838
                     /locus_tag="VLL95_06305"
     CDS             1596..>2838
                     /locus_tag="VLL95_06305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38510.1"
                     /translation="MQMRFHQLMMALLLCLALPAVLRSQQSILVNFGSATCTNSTSPS
                     FSLIRQPFGPNPLVLAQCDMKAQLPDYFSVFIAYNPKDNRLYVCDNRTGTQSKIWRID
                     AGLPTRIACPPSIPVTPTFTHSYVSNNFEFDNNGDLWSLAAYDLNTGQCRMDKFDVET
                     GAIINTRILQFPAGNFPTIIFSGDITILPNGRMFATLGSNPSRLYEILNYSSTSGNAT
                     AVFLQTMPLNCYGIAYLNGELEITGSNLVNDCYYYRYSIADNTLSAARPFQNLQAPID
                     NTSLTPTLGTTKQLLQSTLVNASTADLTYEVFIRNMGNVILNDINIEENLEDAFGVGN
                     VSNVSIEFAPGGNPAGLVLSPSYNAVSQTWMFNTGQSLPNQTTGSNYFAKILLRCRVS
                     NLQPNKVYLNNVIGRATINNEV"
BASE COUNT          641 a          806 c          708 g          683 t
ORIGIN      
        1 ccttaccaac gtcgatgtca aataaaacaa acgctcctcg aaaaaggagc gtttgtttat
       61 tgagtatgct gaaggtcact acatcagcag gcttctatca ccatagcact cgcgccgcca
      121 ccgccgttgc agatgccggc ggctccgtac ttcgcgttgt tttgcttcag cacgttgatg
      181 agcgtaacaa tgatgcgggc gccactgcag cccagcgggt ggccgagtga aacagccccg
      241 ccatgggcat tcacccgggc aggatcgagc tgcatgcgtt tggtattttc aatgcccacc
      301 acgctgaagg cttcgtttaa ttcccagtag tggatgtctt ccattttcaa acctgctttg
      361 gctacggctt tgggcaccgc cagcgatggg gtagtggtaa accactccgg cgcttgttcg
      421 gcatcggcat aaccaatgat tttggcaatg ggtttcagtc ccagtgattc cgctttgtcc
      481 ttgctcatga gcaccagggc ggcagcgccg tcgttcatgg tgctggcatt ggccgcggta
      541 acggtgccat cctttttgaa ggccggattc aacgtgggga tcttgtcaaa cttcacattg
      601 aaaggctctt cgtctttcgc gaaaagaatg ggatcgcctt tgcgctgcgg tatgggcacg
      661 ggcactactt catcggcaaa cttcccggct tcccatgcgg cctggctgcg ctggtagctt
      721 tcaatggcaa atgcatcctg gtcttcgcgg ctcacgccac aggtgctggc acagagttcg
      781 gctgccatgc ccatggcctg tccatcgtac acatcggtga ggccgtcttt ggccagcccg
      841 tctatcatcg acacattgcc gtacttgttg ccccagcgca ttttgtcggc ataaaaaggc
      901 acattgctca tgctctccat gccaccggcc accaccacct cggcatcgcc cagcaggatg
      961 ctttgggcgg cttgcgcaat ggccttcatg ccactggcgc acactttgtt taccgtggtg
     1021 caattcactt cgttgggcaa gccggcaaac ttggcggcct ggcgggcagg cgcctgtccc
     1081 aggttggcct ggatcacaca gcccatcaac acatcttcta catcggaagc tttgatgccc
     1141 gctttttcaa tggcgccttt gatggcaatg gcacccaatt gcgtggcgga aaaatctttg
     1201 agcgaaccgc caaagctgcc catgggcgta cgcacggcgg agaggatata cacttctttc
     1261 atcaggcaaa aatcgtttag gctgcaaatg taggcattaa gggttgggag acttgcactt
     1321 ataacaaaag ccaatgcaca aaaacggtgc ggctcaattt catcagcttt gaaccacaga
     1381 gacacttggc ggcacagcgg atcacaacgt tgtgcctcgc tgtgctgttc tgccgttgcg
     1441 gttcgattga acgatttttg attgaattga atcgctggag tggcctggag aatagatgcc
     1501 ggcatgatga atcaaaggca tcgcattgct ttgttttgct gtagctttgg ccaagcagag
     1561 gatctccgct tacttacacc attaaccaat tagctatgca aatgcgcttt caccagctaa
     1621 tgatggcctt gcttttgtgc ctggcactgc cggccgtatt gcgaagccag caatccatac
     1681 tggtcaattt tggcagtgct acctgtacca attccaccag cccctctttt tcgcttatcc
     1741 ggcagccatt tggtcccaat ccactggtgc tggcccaatg tgacatgaag gcgcagctgc
     1801 ccgattattt cagcgtgttc atagcttaca accccaagga caatagacta tatgtatgcg
     1861 acaaccggac gggcacccaa tcgaagatct ggcgcattga cgcgggcctt cctacccgta
     1921 ttgcctgccc gccgagcatc ccggtaacgc ccactttcac gcacagctat gtctccaaca
     1981 attttgaatt cgacaacaac ggcgatctct ggtcgctggc cgcatacgac ctcaacaccg
     2041 ggcagtgccg catggacaag tttgatgtag aaaccggtgc aataatcaac acaaggatcc
     2101 tgcagtttcc tgcgggcaat tttcccacta tcattttcag cggcgacatt accattctcc
     2161 ccaacggacg catgtttgcc accctgggca gcaacccatc gcggttgtac gagatattga
     2221 attacagcag cacctcgggc aatgcaacag ccgtgttttt gcagacgatg cctttgaatt
     2281 gctacggcat cgcctacctg aatggtgaac tggaaataac cggttccaac ctggtgaacg
     2341 attgttacta ttatcgctac tccatcgcgg acaacacgct ttccgcggca cggcccttcc
     2401 agaacttgca ggcacctatc gacaacacca gcctgacgcc cacactgggc accaccaagc
     2461 aactgttgca aagcaccctg gtgaatgcca gcactgccga ccttacttat gaagtgttca
     2521 ttcgcaacat gggcaatgta atcctgaacg acatcaacat cgaggaaaac ctggaagatg
     2581 cttttggcgt gggcaatgtg tcgaacgtga gcattgaatt tgcaccgggg ggcaacccgg
     2641 cgggattggt gcttagccca tcctacaatg cggtgtcaca aacctggatg ttcaataccg
     2701 gccaaagcct gcccaaccaa accaccggct ccaattattt cgccaaaatc ttgttgcgtt
     2761 gtcgtgtgtc taatttgcag cccaacaaag tgtatttgaa caatgtgatc ggcagggcca
     2821 ccatcaacaa tgaagtgg
//
LOCUS       DATIQF010000381         2458 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_66867, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000381 DATIQF010000000
VERSION     DATIQF010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2458
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66867"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..560
                     /locus_tag="VLL95_06310"
     CDS             <1..560
                     /locus_tag="VLL95_06310"
                     /inference="COORDINATES: protein motif:HMM:NF028456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38511.1"
                     /translation="FKTKLDEGEEKYLPYKRDEKLARPWAVPGTPGLEHRIGGLEKQN
                     ITGNVNYEPDNHELMVKLRQEKVDRIADYIPAQHLDSGPEKGKVLVLGWGSTYGAIKT
                     AVSDLRAEGHSVAHAHLRYVRPFPKNLGEILRNYETVLIPEINNGQLIKIIRDQYLVD
                     AKGYNKIKGTPITRTELVEEIRKYL"
     gene            739..1212
                     /gene="greA"
                     /locus_tag="VLL95_06315"
     CDS             739..1212
                     /gene="greA"
                     /locus_tag="VLL95_06315"
                     /inference="COORDINATES: protein motif:HMM:NF001263.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HSR38512.1"
                     /translation="MSAVNYVTQETFEKMQAELQHMRAVERPAASRAIAEAREKGDLK
                     ENAEYDAAKEAQGILEAKIKALEAAIANSRIVDTNTIDTSKVSILTKVKITNLATKKT
                     MEYTIVGEKEADLKAGKISATSPIGKGLIGKAVGDIAEVQAPTGILKFKIEEIGI"
     gene            1342..1740
                     /locus_tag="VLL95_06320"
     CDS             1342..1740
                     /locus_tag="VLL95_06320"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF023395.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HSR38513.1"
                     /translation="MTIFSKIIAGEIPSFRIAENEKFYAFLDIFPATEGHTLVVPKLE
                     TDRLFDLPADYLDGYLSFCQPIANAIRQVTGCDRVNIVTIGFEVPHAHIHLVPMNNMG
                     DADILTKKIKPTMDELKATQEKILAAMAGS"
     gene            complement(1754..2359)
                     /gene="ruvC"
                     /locus_tag="VLL95_06325"
     CDS             complement(1754..2359)
                     /gene="ruvC"
                     /locus_tag="VLL95_06325"
                     /inference="COORDINATES: protein motif:HMM:TIGR00228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HSR38514.1"
                     /translation="MPSTSPSSSSVTILGIDPGTVVMGYAVIRCTGKQMQLLHMGTLN
                     MHWEHDVFERLQRIFNTIDEVIRQYNPSQFAIEAPFFGKNVQSMLKLGRAQGVAIACA
                     MQHQLEVTEYSPKKVKQAITGNGNADKERVWDMLQMHMKLTEKPKGFDASDALAVAVC
                     HYFQSQSPLAGLGKKAKGWDDFIRKNPDRVSAAAAKGRKSS"
BASE COUNT          680 a          641 c          593 g          544 t
ORIGIN      
        1 aattcaaaac caagctggac gaaggcgaag aaaaatacct gccgtacaaa cgggatgaaa
       61 agctggcacg cccctgggca gtacccggca cacccggcct ggaacaccgc attggtggcc
      121 tcgaaaaaca aaacattacc ggcaacgtaa actacgagcc cgacaaccac gagctgatgg
      181 tgaagctgcg gcaggaaaaa gtagatcgca tcgccgatta cattccggca caacacctgg
      241 acagtggacc ggaaaaaggc aaagtgctgg tactgggatg gggcagtacc tacggtgcca
      301 ttaaaacagc ggtatctgac ctgcgtgccg aaggccattc ggtagcgcat gcccacctcc
      361 gttatgttcg cccgttcccg aaaaacctgg gagaaatcct ccggaattac gagactgtgc
      421 tgattcctga gatcaacaac ggccaactca tcaagatcat ccgcgaccag tacctggtgg
      481 atgccaaagg atacaacaag atcaagggca cccctatcac ccgcaccgaa ctggtggagg
      541 agatcaggaa gtacctgtaa actgtttcct aaaaaatgaa agcctgccca atctaccggg
      601 caggcttttt ttgtgcgcag gtggttcgaa ttcgattttc cttatttttg acccaatggc
      661 aacgctttca ccgtggtgga ggcgttgtta tttttttctg tccaaacaaa gcatgactac
      721 aaacacagga ggaacgatat gagtgccgtg aactatgtaa cccaggaaac atttgaaaaa
      781 atgcaagccg agctccagca catgcgggct gtagaacgtc cggctgccag ccgcgccatt
      841 gcggaagccc gtgaaaaagg cgacctgaaa gaaaacgccg aatacgatgc cgccaaagag
      901 gcgcagggca ttttggaagc caaaataaaa gcgctggaag ctgccattgc caacagccgc
      961 attgtggata ccaacaccat cgacaccagc aaagtgagca ttctcaccaa ggtgaagatc
     1021 accaacctgg ccaccaaaaa gaccatggaa tataccattg taggagaaaa ggaagccgac
     1081 ctgaaagccg gtaaaatttc tgccacctct cccatcggca aaggtctcat cgggaaggct
     1141 gtgggcgata ttgccgaagt gcaggcaccc actggtattc tcaaattcaa aattgaagag
     1201 atcggtatct gattgaaacc gttacatcga atattcagaa gaggctgtct ccctggaggc
     1261 agcctcttca ttttggccaa ctggaacagg ctgttttact ttgagcaacg cagcatttga
     1321 tcacttcaca attgacaggt catgaccata ttcagcaaaa tcatcgccgg agaaatacct
     1381 tctttcagga ttgcggaaaa tgaaaaattc tatgcctttc tcgacatttt tccggccacg
     1441 gaaggccaca ccctggtagt gcccaaactg gaaaccgatc ggctgttcga cctgcccgct
     1501 gattacctcg atggttatct cagtttttgc caacctattg ccaatgccat tcgccaggta
     1561 accgggtgcg accgggtaaa cattgtaacc atcggctttg aagtgccgca tgcccatatt
     1621 cacctggtgc ccatgaacaa catgggtgat gccgacatcc tcaccaaaaa aataaaaccg
     1681 actatggatg aattgaaggc cacacaggaa aaaatactgg ctgcaatggc aggatcataa
     1741 ggctttgcag gcgttaagaa gacttgcgtc ctttcgcggc agcggcgctt acccggtccg
     1801 gatttttgcg aatgaaatca tcccagcctt tggctttctt gccaagtcct gccagcggcg
     1861 attgcgattg aaaataatga cacactgcaa ccgccagtgc atccgatgca tcaaaccctt
     1921 ttggtttttc agtcagcttc atatgcattt gcagcatgtc ccataccctt tctttatccg
     1981 cattgccatt gccggtgatg gcctgcttta ctttcttcgg cgaatactcc gtcacttcca
     2041 actggtgctg catggcgcag gcaatggcca cgccctgtgc ccttcccagt ttcagcatgc
     2101 tctgtacgtt cttgccaaaa aacggcgctt caatggcaaa ttgagaaggg ttgtattgcc
     2161 ggatcacttc gtcaatggta ttgaatatgc gttgcagccg ttcaaacaca tcgtgctccc
     2221 aatgcatgtt gagcgtgccc atgtgcagca gctgcatttg tttgccggta caacgaataa
     2281 ccgcgtaacc catcaccacc gtgccgggat cgatgcccag gatggtgaca ctggaggaag
     2341 atggggaagt ggagggcatg attattggat tgccaacatt gccatttaaa caattgccat
     2401 ttgcgacaag tctgccatcg aaagtaaaca gtattttgca tgtcgaaaaa aagcacgg
//
LOCUS       DATIQF010000382         1972 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_219047,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000382 DATIQF010000000
VERSION     DATIQF010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1972)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1972)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1972
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219047"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..511
                     /locus_tag="VLL95_06330"
     CDS             <1..511
                     /locus_tag="VLL95_06330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38515.1"
                     /translation="GLGTYVTSKYLKYHHYFKHDRVNPLRIRRISWTIGIVLLVPSVW
                     LAYQKWEMLRLEKQSNVYVNRIEKAFPELVIVKYEPFRRGNKDYLSISLLNDSTDIAT
                     RVLKEANRLDSSIHVLWHFAPNRASSESRWLMGEVKRLDSVISRQDLMIRQLQKKLAS
                     DSANRQPVE"
     gene            555..1478
                     /locus_tag="VLL95_06335"
     CDS             555..1478
                     /locus_tag="VLL95_06335"
                     /inference="COORDINATES: protein motif:HMM:TIGR03168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase family hexose kinase"
                     /protein_id="HSR38516.1"
                     /translation="MIVTVTLNPCIDKSSKVEKMKPESKLRCTEVVHEPGGGGINVSK
                     ALKKLETASFALFPAGGHNGAMLQSLLKKDNIMYHAVNTEVETRENWIVLETSTNNQY
                     RFTFPGLSVEEKAIIHLIDDIKAFAPSYIVASGSLPPGLPPYFYGLLVKTANALGAKC
                     IVDTSGEALQALHGRKAFLIKPNIGELCKLLGKDYIDKADVPHAARQVLLDGYAEMAA
                     VSMGPLGAWLVTESDQFFAPAPDVPKRSTVGAGYSMVAGITYMLQKGGSLLDAICMGV
                     ACGSAATMNEGSQLFKSEDAHRLYHQVRQSV"
     gene            1542..>1972
                     /locus_tag="VLL95_06340"
     CDS             1542..>1972
                     /locus_tag="VLL95_06340"
                     /inference="COORDINATES: protein motif:HMM:NF024748.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HSR38517.1"
                     /translation="MRMKMLVLMVAVAAGMGFANAQKMDKALEEKLISLTEGFKGEVG
                     FYVKNLKTGKVASFHADSVFPTASTVKVPILVGIFEKLEKGELNYHDKLTYRDSLFYA
                     GEDILGSFKDGEQIELSKVIMLMCTTSDNTASLWLQSLAGTG"
BASE COUNT          502 a          508 c          530 g          432 t
ORIGIN      
        1 tgggcttggc acctatgtta ccagcaaata cctgaagtat caccattact tcaaacacga
       61 cagggtgaat cctttgcgca tcagaaggat ttcctggacc atcggtatcg ttctgttagt
      121 gcctagtgtg tggctggcct atcaaaaatg ggaaatgctg aggctcgaaa agcaatccaa
      181 tgtatacgtg aatcggattg aaaaagcatt cccggaactg gtgatcgtaa agtatgaacc
      241 ctttcgcagg ggcaacaaag actatctttc tatttcactg ctgaatgaca gtactgatat
      301 cgccacccgt gtgttgaaag aagccaaccg gctggattcc tccattcatg tgttatggca
      361 ttttgcgccc aaccgcgcca gctcagagag tcgctggctg atgggcgaag tgaagcggct
      421 ggacagtgtg atcagccggc aggaccttat gatccgccaa ttgcagaaaa aactcgcctc
      481 cgacagtgcc aacaggcagc cggttgagta atatcattgt tgcggtcaat cattcgacct
      541 tatttgcact ccctatgata gtaaccgtaa cactcaatcc atgcatcgac aagagttcga
      601 aagtggagaa gatgaaaccc gaaagcaaac tgcgttgtac cgaagtggtg cacgaacccg
      661 gcggtggtgg catcaacgtg agcaaggcat tgaagaaact ggaaaccgcc tcgtttgcct
      721 tgtttccggc gggtggccac aatggcgcca tgctgcagag tttgctgaag aaagacaaca
      781 taatgtatca cgccgtgaac acggaagtgg aaacccggga gaactggatc gtactggaaa
      841 cctccaccaa taaccaatac cgcttcacct ttcccggctt gtcagtggaa gaaaaagcca
      901 tcatccacct catcgacgat atcaaggcat tcgccccttc ttacattgtg gccagcggca
      961 gtctgccacc cggcctgccg ccatatttct acggcttgct ggtgaagacg gccaatgccc
     1021 ttggcgccaa atgcatcgtg gatacttccg gcgaagcctt gcaggcattg cacggccgaa
     1081 aggcgtttct catcaaaccc aatatcggcg agctgtgcaa gctgctgggc aaggactaca
     1141 ttgacaaagc ggatgtgccg catgccgccc ggcaggtatt gctggatggc tatgcagaaa
     1201 tggcagccgt gtccatgggt ccgctgggtg cctggctggt gacggaaagc gaccagtttt
     1261 tcgccccggc acccgatgtg cccaagcgca gcaccgtagg cgccggctac agcatggttg
     1321 cgggcattac ctacatgctg caaaaaggcg gcagcctgct cgatgccatt tgcatgggcg
     1381 tggcctgcgg atcggcagcc accatgaacg agggatcaca actcttcaaa tcggaagatg
     1441 ctcaccgcct gtatcaccag gtgcggcaaa gtgtttaggc caacagtatt tgcattggca
     1501 atgcatacag tctcttattt tgcggccaaa tgattgcttg tatgcgcatg aaaatgctgg
     1561 tacttatggt ggctgtggcc gcaggcatgg gctttgccaa tgcccagaag atggacaaag
     1621 cgctggaaga aaaactgatc agcctcaccg agggtttcaa aggagaagtg ggcttttatg
     1681 taaagaacct gaagacgggc aaggtggcct ccttccatgc ggatagtgta tttcccactg
     1741 ccagcacggt caaagtgccc atactcgtgg gcatcttcga aaaactggaa aaaggagaac
     1801 tcaattatca cgacaagctc acttaccgcg actcgctgtt ctatgccggg gaggacatcc
     1861 tcggttcttt caaagacggc gagcaaatag aactgagcaa agtgatcatg ctgatgtgca
     1921 ccaccagcga taatacggcc tcgttgtggc tgcagtcgct ggctggcacg gg
//
LOCUS       DATIQF010000383         2549 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_112705,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000383 DATIQF010000000
VERSION     DATIQF010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112705"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..898)
                     /gene="thiL"
                     /locus_tag="VLL95_06345"
     CDS             complement(<1..898)
                     /gene="thiL"
                     /locus_tag="VLL95_06345"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HSR38518.1"
                     /translation="MERTEVNTLGEFGLIDHLTRNNETRQASTILSVGDDAAVIDHFG
                     KQTVISTDILVEGVHFDLMYTPLKHLGYKSIVVNLSDIYAMNATPTHVTVNIAFSNRF
                     SVEALDELYEGMYAACEKYNVDLVGGDTSSSQKGLIISVTAIGEVTPNEFVTRSGAQK
                     GDLICVSGELGGAFLGLTLLEREKKIFMENPGVQPDLENEAYIVGRLLKPEARKDVVE
                     WLAENDIKPTSMMDISDGLSSEVLHICKQSNCGAVLYEEKIPVHDDARQFAYKLELDP
                     TACALSGGEDYELVFTIKQSDYE"
     gene            complement(1006..1794)
                     /locus_tag="VLL95_06350"
     CDS             complement(1006..1794)
                     /locus_tag="VLL95_06350"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HSR38519.1"
                     /translation="MLEKVLRDAAHAGANELRKYFNNPDLQTSFKAGGVNDLVTEADH
                     AADKAIIGVIKSQFPDHFILSEETGNVATDSEYKWIIDPIDGTINFAQGIPICCVSIG
                     LEKNGEMIMGVVYAPFLNEFYFTEKGKGAFLNDKQIHVSKQQNVIHSCMVTGFPYSYV
                     NMPNGPLECFERFIRRGIPVRRLGSAAIDLCWVAAGRFDGFYEHKLNAWDSAAGWLLV
                     EEAGGTVTNFEGAPYSPYQPKIVATNGLIHEELLQWLRGDIPVE"
     gene            1897..>2549
                     /locus_tag="VLL95_06355"
     CDS             1897..>2549
                     /locus_tag="VLL95_06355"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSR38520.1"
                     /translation="MQLSVIIVNYNVKHFLEQCLAAVRLAAQGLECEVLVVDNNSSDG
                     SVAYLQPLYPEVRFIALDHNPGFAKANNLALLQCSGRYVLFLNPDTIIAEDTLAKTLT
                     FMETHPDAGALGIRMIDGSGRFLPESKRGFPSPFTSLCKQLGLHKLFPHSKIFARYYL
                     GHLPSHETNQVEVLAGAFMLLRKDVLDSVGSFDEQFFMYGEDIDLSYRITQAVWKNY"
BASE COUNT          550 a          679 c          640 g          680 t
ORIGIN      
        1 tctcgtaatc gctttgtttg atggtgaaca ccagttcata atcttcacca ccgctcagtg
       61 cgcaggccgt gggatcgagt tcgagtttgt aggcaaactg ccgggcatca tcatgcaccg
      121 gaatcttttc ttcgtacaac accgcgccgc aattgctttg cttgcagatg tgcaggactt
      181 cgctgctcag tccatcgctg atgtccatca tgctcgtggg tttgatgtcg ttttccgcca
      241 gccattccac cacatccttg cgggcttccg gcttgagtaa gcgtcccacg atgtaggcct
      301 cattctcgag gtcgggttgc acgccggggt tctccatgaa gatcttcttc tctctttcca
      361 gcagcgtgag cccgaggaac gcgccaccca attcaccact tacgcaaatg aggtcgcctt
      421 tttgggcgcc actgcgggtc acaaattcat tgggcgtcac ctcgccgatg gcggttacgc
      481 tgatgatgag tcccttttga gaagaggagg tatcgccgcc caccaggtcc acattgtatt
      541 tctcgcaggc tgcatacatg ccttcgtaca attcatccag cgcttccacg ctgaatcgat
      601 tgctgaaggc aatgttcacg gtgacatgcg tcggcgtggc attcatggca tagatatcgc
      661 tcaggttgac cacgatgctt ttgtaaccga ggtgtttcag cggcgtgtac atcaggtcaa
      721 agtgtacccc ttctaccagt atgtcggtac tgatgactgt ttgcttgcca aagtgatcga
      781 tcacggcagc atcatcaccc acactgagaa tggtggaggc ctgcctggtt tcattattgc
      841 gggtcaggtg gtcaatcaaa ccaaattctc cgagggtatt tacttctgtt ctttccataa
      901 tttctgaatt ttcccactaa ggccactaag tgccacgaag attgttctta gtgattcttt
      961 gtggtctttg tgggagtagt tgtttttacc aaggcaatgc atggtttatt ctactggtat
     1021 atcacctcgc aaccattgca gcagttcctc atggatcaat ccgttagtag ctacaatctt
     1081 aggttgatat gggctgtaag gtgctccttc aaaattcgtt acggttccac ctgcttcttc
     1141 caccagcagc cagcctgcgg cgctgtccca tgcattgagt ttgtgttcgt agaaaccatc
     1201 aaaacggccg gcggctaccc agcacaaatc aatggcggca ctgcccaacc tgcgcaccgg
     1261 gatgccacgg cgaatgaaac gctcaaagca ttccagcggc ccattgggca tattgacata
     1321 agaataaggg aatccggtaa ccatgcagga atgaatcacg ttttgctgct tgcttacatg
     1381 gatctgcttg tcgtttagaa aggcaccctt tcccttttct gtaaaataga attcattgag
     1441 aaacggggca tatacgacgc ccatgatcat ctcgccattt ttttcaagac caatgcttac
     1501 gcagcaaatg ggaatgccct gggcaaaatt gatggtgccg tcaatgggat cgatgatcca
     1561 tttgtattcg ctgtcggtgg ccacgttgcc ggtttcttca ctcaggatga agtgatcggg
     1621 aaactgcgac ttgatgacgc cgatgatggc tttgtcggct gcatggtcgg cttcggtcac
     1681 caggtcgttc accccgccgg ccttgaagct ggtttgcaga tcggggttgt tgaaatattt
     1741 ccggagttca ttggcgccgg catgagcggc gtcgcggagc actttttcta acatggcgca
     1801 aaagtagctt tcggcgggcg gatggccgca tttgccacgc atacattaac gttctgcacc
     1861 agccttcggc cgtttgcgct atttttccgc atcgctatgc agctgtctgt catcattgtc
     1921 aactacaacg tcaagcattt cctcgagcaa tgcctggcgg ctgtgcgcct ggccgcccaa
     1981 gggctggagt gcgaagtgct ggtggtggac aataacagca gcgatggcag cgtggcctac
     2041 ctgcagcccc tgtacccgga agtgcgtttc atagccctcg atcacaatcc cggtttcgcc
     2101 aaagccaaca acctggcttt gcttcaatgc agcggcaggt acgtattgtt cctcaatcct
     2161 gataccatca ttgcagagga cacacttgcc aagaccctca cgtttatgga gacgcatccc
     2221 gatgccggtg cgctgggcat tcgcatgatc gatggcagcg gccgtttcct gcccgaatca
     2281 aaaaggggat tcccttcacc ttttaccagc ttgtgcaaac agttggggct gcacaaactg
     2341 tttccccatt caaaaatctt tgcccgctat tacctcggtc atttacccag ccatgaaacg
     2401 aatcaggtag aggtgctggc aggggctttt atgctgctac gcaaagacgt actcgattca
     2461 gtaggcagtt ttgatgaaca gttcttcatg tatggcgaag acatcgacct gagctatcgc
     2521 atcacacagg ccgtctggaa gaattattt
//
LOCUS       DATIQF010000384         1736 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_264842,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000384 DATIQF010000000
VERSION     DATIQF010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264842"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1736
                     /locus_tag="VLL95_06360"
     CDS             <1..>1736
                     /locus_tag="VLL95_06360"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38521.1"
                     /translation="VSESDPNVLYVGMGEHALRGVMTSYGDGVYKSTDAGKTWKHVGL
                     KETQQISWIRIHPSNPDIVYVAAQGALHGPNPDRGVFKSTDGGATWKKVLYVNDNTGC
                     ADLDIDVSNPRILYAAMWDHQRLPWEVRSGGPGCGLYKSTDGGDTWNKLENGIPKELG
                     KMSVSISRSNPQKVYALIESDWNKEKGGLYVSNDAGSSFSQVSKDHRLTQRAWYYVEV
                     FADPQNENTVYVLNSPGLKSIDGGKTWTNIRGTHGDYHQLWINPNNNQNQVIANDGGA
                     AVTFNGGANWTTQNNQPTAQFYRISVDNLWPYNVYAGQQDNTSVKVASSNPSGYGLSE
                     REWSYSAGGESAFLAFDPNNPKYVMGGSYQGTIEWLDVDAKEGRGVMVAPIQYQALQP
                     KHMKYRFNWNAPIIYSQHEPNAFYHAGNLLFKTTDGGKSWKSVSPDLTRNDKSKQGTS
                     GTPFTNEGAGGENYGTIAYVTESKHEKDLIYTGSDDGQVHVTKDGGANWTNITPPSLE
                     ECLINCIEVSPHDKAAVYVAATAYKFNNKQPMLYKSNDYGKTWTKIVSGIPDGAYTRC
                     IREDEEKRGLLF"
BASE COUNT          484 a          417 c          469 g          366 t
ORIGIN      
        1 ggtgagcgaa agtgacccca acgtgttgta cgtgggcatg ggtgagcatg cgctccgtgg
       61 cgtaatgacc agttatggcg atggcgttta caaaagcacg gatgccggca aaacatggaa
      121 gcatgtggga ttgaaggaaa cgcagcagat cagctggatc cgcatccatc cttccaatcc
      181 cgatattgta tatgtggctg cgcaaggcgc tttgcatggt ccgaaccccg atcgtggcgt
      241 gttcaaaagc actgatggcg gcgccacctg gaagaaggtt ttgtatgtga acgataatac
      301 cggttgtgct gacctcgaca tcgatgtaag caatccccgc attttgtatg ccgccatgtg
      361 ggaccatcag cgtcttccct gggaagtgcg cagcggcgga cccggttgtg gcctgtacaa
      421 gagtactgac ggcggcgata cctggaataa attggaaaat ggtattccga aagagctggg
      481 caaaatgagt gtgagcatca gccgttcgaa cccgcaaaaa gtatacgccc tgattgaaag
      541 cgattggaac aaggaaaagg gaggattgta tgtttccaat gatgcgggat catcgttttc
      601 acaagtaagc aaagatcacc ggcttacaca acgtgcttgg tattacgtag aggtatttgc
      661 tgatccgcaa aatgaaaata cggtatacgt actcaattcg cccgggctta aatccattga
      721 cggcggcaag acatggacta atattcgagg cacccatggc gattaccacc agttgtggat
      781 caatccgaac aacaaccaga accaggtgat tgccaatgat ggcggcgcgg ccgtcacctt
      841 caatggtggt gccaattgga ccacgcagaa taaccagccc accgcccagt tttatcgcat
      901 cagcgtcgac aatctatggc catacaatgt gtatgccggc caacaggaca ataccagcgt
      961 gaaagtggcg agcagcaatc cttccggcta tggcctttcg gaaagagaat ggagctacag
     1021 cgccggtggt gaaagtgcct tcctggcatt tgaccctaac aacccgaaat acgtaatggg
     1081 gggcagctac cagggcacta ttgagtggct ggatgtggat gccaaagagg gaaggggagt
     1141 gatggtggct cccattcaat accaggcttt gcagcccaag catatgaaat accgtttcaa
     1201 ttggaatgca cccatcattt acagccagca tgaacccaat gcgttttacc atgccggaaa
     1261 tttgttgttc aaaacaacgg atgggggcaa atcatggaaa tccgtatcac ccgatcttac
     1321 ccgcaatgac aagagcaagc aaggtaccag cggcacgcct ttcaccaacg aaggtgccgg
     1381 cggggagaac tatggcacca ttgcttacgt aacggagtca aaacatgaaa aagatttgat
     1441 ctacaccggc agcgatgatg gccaggtgca cgtcaccaaa gatggtggcg ccaactggac
     1501 caatatcaca ccgccttctt tggaggagtg tttgatcaac tgcattgaag tgtcgccaca
     1561 tgataaagcc gctgtgtacg ttgctgccac tgcctacaaa ttcaacaaca agcagcccat
     1621 gctgtacaag tcgaacgact atggaaaaac atggaccaaa atagtgagcg gcattcccga
     1681 tggcgcttac acccgttgca tccgggaaga cgaagagaaa agaggattgt tgtttg
//
LOCUS       DATIQF010000385         1867 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_112727,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000385 DATIQF010000000
VERSION     DATIQF010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1867
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112727"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            102..620
                     /locus_tag="VLL95_06365"
     CDS             102..620
                     /locus_tag="VLL95_06365"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: protein motif:HMM:NF015048.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HSR38522.1"
                     /translation="MKSKKVSESINHMNELVLPNDTNTFGNLMGGRLIYWMDIAAAYC
                     ASKHSNTPVVTASVDNISFKNPIKLGHYVHIEAKVTRAFNTSMEIHLKVWGEDTLHQF
                     KYESNEAYFTFVALDPNDNPRPVPQVIPETEDEKKLFEGALRRRQLRLILAGKMKPDE
                     ATELKALFVPEH"
     gene            complement(617..1030)
                     /locus_tag="VLL95_06370"
     CDS             complement(617..1030)
                     /locus_tag="VLL95_06370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38523.1"
                     /translation="MAKKTWIEKRMLDRAPVVEVVDKKFADIPAGATMLIANPMVVDA
                     YVRQIPKGRDSSIAQMRKDLAGEYGAQYMCPVTAGIFLRIVAEAAWEEMQQGKKPNQV
                     APFWRIISLKSPTAKKLSFGTDFLEEMRQKEKLDN"
     gene            1086..1673
                     /locus_tag="VLL95_06375"
     CDS             1086..1673
                     /locus_tag="VLL95_06375"
                     /inference="COORDINATES: protein motif:HMM:NF017534.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HSR38524.1"
                     /translation="MPDKPALNDDYWSQRYLTEQTGWDIGYISTPIKEYVDQLENKNI
                     SILIPGCGNAYEAHYLWNQGFQNITLIDISSVLVERLQKEVTSTSIQVMHGDFFDHVG
                     QYDLLLEQTLFCAIAPGMREKYIAQAASLLKPGGKLVGVLFNCHFDGGPPFGGTIEEY
                     RPMFSRHFNILKMEPCYNSIEARSNREAFIICTPL"
     gene            complement(1654..>1867)
                     /locus_tag="VLL95_06380"
     CDS             complement(1654..>1867)
                     /locus_tag="VLL95_06380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38525.1"
                     /translation="STSKKSLKNGLNNEPDVFAMFAMLPPFFGGRKLLKQRGNLHDKS
                     HEFPMCRGRKSPKLCTIFFAVKAGCI"
BASE COUNT          475 a          494 c          434 g          464 t
ORIGIN      
        1 acccggatta caaggcctac cagcagcgta ccccacgctt cctgcccaaa ttgttgcgga
       61 aataacaaga ccaaccgttt gaatttggtt ttctttgccg catgaaatcg aagaaagttt
      121 cggaaagtat caaccacatg aacgaactgg tgttgcccaa cgacaccaat acttttggca
      181 acctgatggg tggccgcctg atttactgga tggatattgc cgccgcctat tgcgccagca
      241 aacacagcaa tacaccggtg gttaccgcct cagtggacaa tatttcattc aagaatccta
      301 tcaagctggg ccactacgta cacattgaag ccaaagtgac ccgggctttc aataccagca
      361 tggaaattca cctcaaggtt tggggcgaag acacgctgca ccagttcaaa tacgagagca
      421 acgaagccta tttcacattt gtggccctgg accccaacga caatccccgc cccgttccgc
      481 aggtaatacc agaaacggag gacgaaaaga aactgtttga aggggcactg cgccgtcgcc
      541 agttgcgcct catcctcgca ggaaaaatga agcctgacga agccacggaa ctgaaggcgc
      601 tgttcgtacc ggaacactaa ttgtcgagtt tttctttttg gcgcatctct tccaggaaat
      661 cggttccaaa actgagcttt ttggctgtgg gtgatttcag cgaaatgatg cgccagaacg
      721 gcgctacctg gttcggcttt ttaccctgct gcatttcttc ccaggcagct tctgccacta
      781 tgcgcagaaa aatgcctgcc gttaccgggc acatgtactg tgcaccatat tcgccggcaa
      841 ggtctttgcg catttgcgca atggagctgt cgcgtccctt gggtatctgt cgcacatagg
      901 catccaccac catggggttg gcgatgagca tggtggctcc ggcaggaatg tcggcaaatt
      961 tcttgtccac cacttccacc accggcgccc ggtccagcat ccgcttttca atccatgttt
     1021 tctttgccat accattaagt tacttcaact ttagtcacca ttctttcacc caataaaaag
     1081 atgttatgcc agacaagccc gcattgaatg acgactattg gagccagcgg tacctcaccg
     1141 agcaaaccgg ttgggacata ggctatattt ctacgccgat caaggaatat gtggaccagt
     1201 tggaaaacaa aaacatttcc attctcattc caggctgtgg caatgcgtat gaagcccatt
     1261 acctgtggaa ccagggattt cagaacatta cgctcattga tatttccagt gtgttggtgg
     1321 agcgcctgca aaaggaagtg acaagcacga gcatccaggt aatgcatggc gatttttttg
     1381 accacgtcgg ccaatacgac ctgctgctgg agcaaacctt gttctgcgcc attgcgccgg
     1441 gtatgcgtga aaaatatata gcccaggcag cctcgcttct aaaaccgggc ggcaagttgg
     1501 tgggtgtatt gttcaactgt cattttgatg gtgggccacc ctttggcggc accatcgaag
     1561 agtatcgtcc catgttcagc cggcatttca atatcctcaa aatggagcct tgttacaact
     1621 cgattgaagc ccgctccaac cgcgaagcat tcattatatg caccccgctt taaccgcaaa
     1681 aaaaatggtg cacaatttgg gggattttcg ccccctgcac atcgggaatt cgtgactttt
     1741 atcatgcagg ttgccccttt gtttcagtag ctttctgcca ccaaaaaaag gaggtaacat
     1801 ggcaaacatt gcaaaaacat caggctcatt gtttaagcca ttcttcagcg attttttcga
     1861 tgtagat
//
LOCUS       DATIQF010000386         2667 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_82241, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000386 DATIQF010000000
VERSION     DATIQF010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2667
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82241"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1711
                     /locus_tag="VLL95_06385"
     CDS             <1..1711
                     /locus_tag="VLL95_06385"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HSR38526.1"
                     /translation="QEAPLAKSVFGDTPAMMEYFSKLVGMEYPWPKYAQMVGRDYVSG
                     AMENTTATLHGTAAYQNARQLKDGNSFEIVVAHELFHQWFGDLATAESWSNLTVNESF
                     ADYSEYLWLENKYGKDHALAYNLEAMNGYLLNPGNSSRHLVRFQYDDKEEMFDGVTYQ
                     KGGRIQNMLRYYVGDSAYFKAMQVYLQQNKFKNTEAHQWRLALEEVSGKDLNWFFDQW
                     YYGSGHPNMEISTEVDTAASLARVILTQKQKGNVFAIPVEIDVYTKGKPNRITWWTKS
                     ANDTVTLQFETMPDWIDVDPSRLMLWQKKTNQPAAAWKAQAKYASNHVQKLEVIEQLS
                     SDWKDEEAVYSILEQMISDKYFGTRKAALNVLRKGHIKITSALLKKVAALAQSETNAP
                     TRAYAIDVLSHVVPSAYEAMFEKACLDSSYSVAGAALEALARVKDSKAVALAAQLKDD
                     AKGRLSSSLQITEYLDKDASKPAATIDAYKKMSPVSKIMEANAMLYFANRINEVSDFR
                     KAVGPAIEAYKMLRMDYQGMQTAIASTIYWMIHQRESKLKADPNDTNAKEQLAYLKEK
                     TGF"
     gene            1795..2211
                     /locus_tag="VLL95_06390"
     CDS             1795..2211
                     /locus_tag="VLL95_06390"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF013782.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HSR38527.1"
                     /translation="MFSIPAHAFAVPIKIEAADIDQLNHVNNVVYFKWVQEVATAHWE
                     SLTTPQQRAQWLWVVRRHEIDYLRPTFAGDEVTAFTWVVPAEQPGSDRIIVFKNMKTD
                     KVLTQVKTTWYLIDPASMRSKKIPDEVFALFGISSI"
     gene            complement(2244..2627)
                     /locus_tag="VLL95_06395"
     CDS             complement(2244..2627)
                     /locus_tag="VLL95_06395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38528.1"
                     /translation="MAVNGDKVAVVWFSAPRDTASVHLVFSNDGGKTFGSPVRIDEGR
                     PIGRVEVAWLNDHEVAAIWMENDEIKLLSVSDKGKTGTVRSVAASSSKRAAGFPQLTK
                     YGNKLVFAWTDLDTKQVQTALLPFE"
BASE COUNT          746 a          691 c          658 g          572 t
ORIGIN      
        1 acaggaagct ccattggcca aatccgtttt tggcgacacc cctgccatga tggaatattt
       61 cagcaaactg gtgggcatgg aatatccctg gccgaagtat gcgcaaatgg tgggtcgcga
      121 ttacgtgagc ggcgccatgg aaaacaccac tgccacactg catggtaccg ctgcctatca
      181 aaatgcccgt cagctgaaag acggcaattc atttgagatc gttgtcgcac atgaactctt
      241 ccatcaatgg tttggcgacc tggccactgc tgaaagctgg agcaacctta ccgtgaacga
      301 gagctttgcc gactacagcg aatacctgtg gctggaaaac aaatatggca aagaccatgc
      361 gctggcctac aacctggaag ccatgaacgg atacctgctg aaccccggca acagcagcag
      421 acacctggtg cgttttcagt acgacgacaa agaggaaatg tttgacgggg tgacttacca
      481 gaaaggagga cgcatccaaa acatgctgcg ctattatgtg ggcgacagcg cttatttcaa
      541 agccatgcag gtatacctgc agcaaaacaa attcaaaaac actgaagccc accagtggcg
      601 cctggcattg gaagaagtga gtggcaaaga cctgaactgg ttttttgacc aatggtacta
      661 cggcagcggc caccccaaca tggagatcag caccgaagtg gatactgccg ccagccttgc
      721 ccgtgtgata ctgacccaaa agcagaaagg caacgtgttt gccattccgg tggagattga
      781 tgtgtacacc aagggaaaac ctaatcgtat cacctggtgg acaaaatcgg ccaacgatac
      841 cgtgacattg caattcgaaa ccatgcccga ttggattgat gtggatccat caaggctgat
      901 gctttggcag aagaaaacaa accagccggc tgctgcctgg aaggcacagg caaaatatgc
      961 cagcaaccat gtacagaaac tggaagtgat agaacagctt tcatccgatt ggaaagacga
     1021 ggaagccgtt tacagcatcc tggaacaaat gatcagcgac aaatacttcg gcacccgaaa
     1081 ggctgcattg aatgtattgc gcaaaggcca tatcaaaatc acttctgcgc tactgaaaaa
     1141 ggtggcggca ttggcacaaa gcgaaaccaa tgcacccacc agggcttatg ccattgacgt
     1201 gctgtcgcat gtggtgccgt cggcatacga agccatgttt gaaaaggcct gcctcgacag
     1261 cagctacagc gtggcgggcg ctgcattgga agcactggca agagtaaaag acagcaaagc
     1321 agtagcattg gcagcgcagc tgaaagacga tgccaaagga agactcagca gcagcctgca
     1381 aataacagaa tacctggaca aggatgccag caaacctgca gccaccattg atgcgtataa
     1441 aaagatgtcg cctgtatcta agataatgga ggcaaatgcc atgctgtatt ttgccaaccg
     1501 cataaacgaa gtcagcgact tccggaaagc ggtaggcccc gccattgagg cttacaaaat
     1561 gttgcgcatg gattaccagg gcatgcaaac ggccatcgcc tctaccattt actggatgat
     1621 ccatcaaagg gaaagcaaac tgaaagctga ccccaacgat accaatgcca aagagcaact
     1681 cgcttacctg aaagaaaaaa caggattcta ggagcaaatt tggaaacaca gcaagcccaa
     1741 tgctttatag atggggcttg tttattttta tagcgctata ctcaatccac ttttatgttt
     1801 tccattcctg cacatgcgtt cgctgtaccc atcaaaatag aggctgctga tattgatcaa
     1861 ttgaaccacg taaacaacgt tgtgtatttc aagtgggtgc aggaagtggc tacggcccac
     1921 tgggaaagcc tgaccacgcc gcagcagcgg gcacaatggt tgtgggtggt tcgccgccat
     1981 gagatcgatt acctgcggcc gacttttgcc ggcgacgagg tgactgcgtt tacctgggtg
     2041 gtgcctgccg aacagccggg ctccgaccgg atcatcgtat tcaaaaacat gaagacggac
     2101 aaagtgctga cacaggtaaa aaccacctgg tacctgattg accctgccag catgcgcagc
     2161 aaaaaaatac cggacgaggt ttttgccttg tttggcattt catccatttg acgatacacc
     2221 tcgattcatt tccattggct cacctactca aaagggagca gcgccgtttg cacctgcttg
     2281 gtatcaaggt ccgtccaggc aaacaccaac ttgttcccgt atttagtgag ttgcggaaag
     2341 cctgcggccc gcttgctact ggatgcggcc acactgcgta ccgttccggt tttgccttta
     2401 tcgcttactg agagcagttt tatttcatcg ttttccatcc aaatagctgc tacctcgtga
     2461 tcgttcaacc acgccacttc caccctgcca atgggcctgc cctcatcaat gcgaacaggt
     2521 gaaccaaatg ttttgccccc gtcgttggaa aaaaccaggt gtaccgatgc ggtatcccgt
     2581 ggtgctgaaa accaaacgac cgcaacttta tcaccgttca ccgccattct cggtcaattc
     2641 accgggcaac cttttatctg ccagttt
//
LOCUS       DATIQF010000387         2714 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_158355,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000387 DATIQF010000000
VERSION     DATIQF010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2714
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158355"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..218
                     /locus_tag="VLL95_06400"
                     /pseudo
     CDS             1..218
                     /locus_tag="VLL95_06400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010794468.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
     gene            complement(202..1152)
                     /locus_tag="VLL95_06405"
     CDS             complement(202..1152)
                     /locus_tag="VLL95_06405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38529.1"
                     /translation="MLRSKIRPLSLCISILFFSSIALVAQDTSKGQVSADTGNQQYRD
                     NFDSARFANQVDSARRVPEGAGQRRKISDTVLVTQLNLMERYANRLGQMTAWFARGID
                     TASLAEEIGKVEDQLRVAKAGIAPTGEKQNLRNLNATRVLMVEIEKHLERWQKDLSDY
                     SREVVNMRIALDTMFRDSVLRVTPKDSLLAQQYITRVADLVKRYIPLDSSIRKTNINL
                     GLLQGRVIRSLLEVKDNIYSIDQSIKQIRKNYFKSDEPPLWRLSPSRHSTLDVLNISA
                     HKGKLVLQYYFSSTANVTYTAILLFLALFLALSLMTLHGS"
     gene            1276..>2714
                     /locus_tag="VLL95_06410"
     CDS             1276..>2714
                     /locus_tag="VLL95_06410"
                     /inference="COORDINATES: protein motif:HMM:NF012361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HSR38530.1"
                     /translation="MEISKNFEHQQSESKWYQHWLDKQYFKSTPDEREPYTIVIPPPN
                     VTGVLHMGHCLNNTIQDILIRRARMQGKNACWVPGTDHASIATEAKVVAMLRERGIAK
                     SSLSRDEFLKYAWEWKEKYGGIILQQLKKLGCSLDWDRTSFTMDPDYYQSVIKVFVDL
                     YNKGLIYRGKRMVNWDPVGQTALSDEEVIFKEIDSKLYYVTYRFADGSEGGITVATTR
                     PETILGDVAICVKPTDERYLALVGKEVIVPIINRRIPIIADEYVDATFGTGALKITPA
                     HDKNDNMLGLKHHLKAIDTLDATGKFTIAELLEDQPSEQVMAYNGMDRFELRKKIAQD
                     IAALGQVVKEEDYKGQVGTSERTGAIIESKLSLQWFINMTAFLEKNPQVLEDVLNDTI
                     QFYPEKLKNTYRHWLSNIKDWCISRQLWWGQRIPAWYDKEGNFVVAENETAAEAAYHQ
                     QFGRPSSAGGGLSQDEDVLDTWFSSWLWP"
BASE COUNT          714 a          679 c          689 g          632 t
ORIGIN      
        1 ggcagcagcg gcccttggag gaggtttacc ccatcgttta ttttgacgcg ctgtggggca
       61 aagtgcgcac cgacgggccg gtggtcaaag tggcggtcta cctggccctg gggatcaagc
      121 tcgatggcaa caaggaggtg ctggggatgt gggtcgccaa cagcgaagga gccaagttct
      181 ggttgcacgt gctaaccgag ctcaagaacc gtggagtgtc attaaggaaa gcgccaggaa
      241 taatgccagg aacagcaata tcgctgtata ggtaacattg gctgtgctgg agaaataata
      301 ctgtaatacc aacttccctt tatgggcact gatgttcagt acatccaatg ttgagtgtcg
      361 tgagggcgaa agtcgccaaa gaggtggctc atcacttttg aaatagttct tcctgatttg
      421 tttaatgctt tgatcaatgc tgtaaatgtt gtcttttact tccagcaggc tgcggatcac
      481 ccttccctgc aataatccca ggttaatgtt tgttttgcga atcgaactgt ccaatgggat
      541 ataccttttc actaaatcgg ctacccttgt gatgtattgt tgcgccagca gtgaatcttt
      601 gggagtcacc ctcaataccg aatccctgaa catggtatcc aaagcaatcc tcatgtttac
      661 cacttcccta ctgtaatcag acaaatcctt ttgccatctt tcaaggtgct tttcaatttc
      721 caccatgagt acccttgtgg cattcaagtt gcgcaggttt tgcttttcac ctgttggagc
      781 gattcccgcc tttgcaaccc ggagttggtc ttccactttg ccaatttcct ctgccagcga
      841 tgcagtgtct attcccctgg caaaccaggc cgtcatttgc cccaacctat tggcatagcg
      901 ctccatcagg ttaagttgcg ttactaaaac agtatcgctg attttcctgc gctgccctgc
      961 gccttccgga acccgcctgg cagaatcaac ttggttggca aacctggcag aatcaaagtt
     1021 atccctgtac tgttggttgc ctgtatcggc gctaacctgt cctttgctgg tatcctgtgc
     1081 taccagggcg atggatgaaa aaaacaggat ggaaatacaa agtgataacg gccggatttt
     1141 ggaacgcagc atacaaattg gtttaaccaa tgataaatat agtctggaaa cgggctttct
     1201 accggtaatg catgtcaggt ttgctatttt tgccggcctg caaaacaggc aatagagaac
     1261 ccgagataaa gaagtatgga aatcagcaag aattttgaac accagcaatc cgagagcaaa
     1321 tggtaccagc actggctgga caagcaatat ttcaagagca cgcccgatga aagggaaccg
     1381 tataccatcg ttattccccc gcccaatgtg accggtgtgt tgcacatggg gcactgcctc
     1441 aacaatacca tccaggacat cctgatccgc agggcccgca tgcagggaaa gaatgcctgc
     1501 tgggtacccg gtactgatca cgccagcatt gccaccgaag ccaaggtagt ggccatgctc
     1561 cgcgaaaggg gcattgccaa aagcagcctc agccgcgatg agtttttgaa atatgcctgg
     1621 gaatggaagg aaaagtatgg cggcatcatt ctgcagcaat tgaaaaaact gggctgcagc
     1681 ctcgattggg atcgcaccag ctttaccatg gatccagatt actaccaatc tgtgatcaag
     1741 gtatttgttg acctgtacaa caagggactc atctaccgcg gcaagcgcat ggtaaactgg
     1801 gacccggttg gccagactgc cctcagcgat gaagaagtaa tttttaagga aatagacagc
     1861 aaactgtatt acgtcaccta tcgctttgcc gatggcagcg aaggcggcat cacggtggcc
     1921 accacccgcc ccgaaaccat tttgggcgat gtggccattt gcgtaaaacc gactgacgaa
     1981 cgctacctgg cgctggtagg caaagaagtg atcgttccca tcataaaccg ccgcattccc
     2041 atcattgccg atgagtatgt ggatgccact ttcggtaccg gtgccttgaa aataacaccg
     2101 gcccacgaca agaacgacaa catgctgggt ctgaagcacc acctgaaggc cattgataca
     2161 ttggacgcca ccggtaagtt taccattgct gaattattgg aagatcagcc atccgaacaa
     2221 gtgatggctt acaatggcat ggaccgcttt gagctgcgca aaaaaatagc acaggatatt
     2281 gcggcgctgg gccaggtggt aaaagaagaa gactacaaag gacaggtagg caccagcgaa
     2341 agaaccggcg ccattattga aagcaagctg agcctgcaat ggttcatcaa catgacagca
     2401 ttcctggaaa agaacccgca ggtgctggaa gacgtgctga acgataccat tcagttttac
     2461 cccgaaaagc tgaaaaacac ctaccgccac tggctcagca acattaaaga ctggtgcatc
     2521 agccgccaac tgtggtgggg ccagcgcata ccggcctggt acgacaaaga aggcaatttt
     2581 gtggtggctg aaaatgagac agcagcagaa gcggcctatc accaacaatt cggtcgtccg
     2641 tcgtctgcag gcggcggtct ttctcaggat gaagacgtgc tcgatacctg gttcagcagc
     2701 tggctgtggc ccat
//
LOCUS       DATIQF010000388         2001 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_21627, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000388 DATIQF010000000
VERSION     DATIQF010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21627"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..212
                     /locus_tag="VLL95_06415"
     CDS             <1..212
                     /locus_tag="VLL95_06415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38531.1"
                     /translation="GTITVIGKSTKKGDKIIFTDIPELKKLDLHTSELFDKVLIGDKL
                     TIEISKYSKTLFRLDKEQTDLLNGH"
     gene            complement(360..1799)
                     /locus_tag="VLL95_06420"
     CDS             complement(360..1799)
                     /locus_tag="VLL95_06420"
                     /inference="COORDINATES: protein motif:HMM:NF012592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe hydrogenase subunit alpha"
                     /protein_id="HSR38532.1"
                     /translation="MDKAEKKRIIISPVTRIEGHAKITIQLNDGGEVSNALFHVNEFR
                     GFEKFCEGRMYTEMPTITPRICGICPVSHTIASAKACEMIQGIQPAPTGNLVRRLIHI
                     GKNISSHALSFFHLSSPDFLLGYDADPAQRNILGLAAKFPDIALRGIRLRKFGQEISE
                     RITGKKIHAVGIVPGGMGVPLTEDNRRALQAWIPEALETVQLGLSIIKTFMEENSDMV
                     DSFAPSPTMYLGTVGPEGEHELYDGKLRFIDAEGGILQDQWEPADYLDYIAERSVNWS
                     YLKYPYYKPLGFEKGIYRVGPLARLNVASRMKTPLAQEEFEKFQILGNGKPVHGTFYF
                     HYARLIETLSSIEEAQQLLNDKHITGTDIQTHGRWNHPVGIGASEAPRGTLFHHYETD
                     ESGKLKMVNLLIATGQNNPSMNRSITEVAKQYVKGTDVAEGMLNRVESAIRCYDPCLS
                     CSTHAMGQMPMQIELTDSQGNVLRQIERN"
     gene            complement(1792..>2001)
                     /locus_tag="VLL95_06425"
     CDS             complement(1792..>2001)
                     /locus_tag="VLL95_06425"
                     /inference="COORDINATES: protein motif:HMM:NF013242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38533.1"
                     /translation="VSNDQEGVVPSHPALLRLHDKVVPLQQVVPVDFVIPGCPPSADT
                     IFYVLNELLNDREPDLAEMKKLKYG"
BASE COUNT          454 a          521 c          502 g          524 t
ORIGIN      
        1 taggaacaat tacagttatt ggcaagtcga caaaaaaagg agataaaata atattcactg
       61 acattcctga attaaagaag ttagacttac atacgagtga attatttgac aaagtattga
      121 ttggcgacaa gttgactatc gaaatatcga aatattcaaa aacattattt cgacttgata
      181 aagaacaaac agacttatta aacggccact aacaagtgca ttagttttat gtccgcggac
      241 agataaagcc atttcaatcc ttccgccgca agtcttctgc gtagcagttc acttgtgtca
      301 tcacaaattc gtcggacgct gtccggctta atgcacaaca tccgcatttg taatccaact
      361 caattccgtt cgatctgcct cagcacattt ccctggctgt cggtcagttc tatctgcatc
      421 ggcatttgcc ccatggcatg ggtgctgcac gagaggcagg gatcgtaaca acggatggcg
      481 ctttccaccc ggttcagcat gccttcggcc acatctgttc ctttcacgta ttgcttcgcc
      541 acttcggtaa tggagcggtt catggaagga ttgttctggc cggtggcaat gagcaggttc
      601 accattttca gtttgccgct ttcatcggtt tcgtagtgat gaaagagcgt gccgcggggc
      661 gcttcgctgg cgcctatgcc cacggggtgg ttccagcggc catgcgtctg tatatcggtg
      721 ccggtaatgt gtttgtcgtt cagcaactgc tgcgcttctt caatgctcga caaggtttcg
      781 atcaggcggg catagtggaa atagaaagtg ccatgcacgg gtttgccatt gccgaggatc
      841 tggaattttt caaactcctc ctgtgccagt ggcgtcttca tgcggctggc cacattgagc
      901 ctggccagtg gccctacccg gtagatgccc ttttcaaaac ccagcggttt gtaatacgga
      961 tacttgaggt aagaccagtt caccgaacgt tcggcaatgt aatccaggta atcggccggc
     1021 tcccattgat cttgcaggat accgccttcc gcgtcaatga aacgaagctt tccatcgtac
     1081 aactcgtgtt ccccttcggg gcccactgta ccgaggtaca tggtaggtga tggcgcaaag
     1141 ctgtccacca tgtcgctgtt ttcttccatg aatgttttga tgatggacaa acccagctgc
     1201 accgtttcca gcgcttcagg aatccaagcc tgcaaggctc tgcggttgtc ttcagtgagg
     1261 ggtacgccca tgccacccgg cactatgcca acggcatgta tttttttacc cgtgatgcgt
     1321 tcgctgatct cctgcccgaa tttgcgcagc cgaatgccac gcagggcgat gtcgggaaac
     1381 tttgccgcca acccgaggat gttgcgctgt gccggatcgg catcgtagcc cagcaaaaaa
     1441 tcgggcgatg acaaatggaa gaacgacagg gcatgcgacg aaatgttttt cccgatatga
     1501 atgagccgac gcaccaggtt gcccgtgggt gccggctgta tgccttgtat catttcgcag
     1561 gccttggcac tggcaatggt gtggctcacc gggcaaatgc cgcagatgcg tggcgtgatg
     1621 gtgggcattt cggtgtacat cctgccttcg caaaactttt cgaagccgcg aaactcattc
     1681 acatggaaca gggcattgct cacctcaccc ccatcattga gttgtatggt tattttggca
     1741 tgcccttcaa tccgcgttac cggactgatg atgatccttt tcttttccgc cttatccata
     1801 tttcagtttt ttcatttcag ctaaatcagg ttcccggtcg ttcagcagtt cgttcagcac
     1861 atagaaaata gtatcggcgc tgggcggaca gccgggaatc acaaaatcaa cgggcaccac
     1921 ttgctgcagc ggcactactt tgtcgtgcag cctcagcaag gcagggtgcg atggcaccac
     1981 tccttcctgg tcgttgctca c
//
LOCUS       DATIQF010000389         1550 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_128060,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000389 DATIQF010000000
VERSION     DATIQF010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1550
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128060"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1234)
                     /locus_tag="VLL95_06430"
     CDS             complement(<1..1234)
                     /locus_tag="VLL95_06430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38534.1"
                     /translation="MTAISPPGRQGSCTFLLLIVFIALGQLGVGQSAARLREISEKLA
                     LEKGYGILFCVVDSTAVTSMTTDFTGLIDIDIRSDRMDTLLRKKELQTAGGQKALMDL
                     AQLLVKQGVSAREKRRPATAVFCYRLPLILTCRSSDRTGMRIVSVNTWLAANDLKGAA
                     NNSDAGKARKLLQEDAKALTAKFGSAWDSLLSNNKSWDKDIFLASHRIALFSRDKTLS
                     TAIMLSALPRIRELDADAIATSLLEELADTQTWEILQQALSDETARKETEPFQRLWKY
                     YLDLHAIYTQEPKGFLLRMEACLRQFEVIRGSVASAGGSFGHKLSYMVSDYLQVVGRD
                     LALLQALDGDMLAALRTAERVRARSLGDWIARSHASDRLEPFNISDQDEVHPIYLSLK
                     AASLSEMATMANANQAALL"
     gene            complement(1340..>1550)
                     /locus_tag="VLL95_06435"
     CDS             complement(1340..>1550)
                     /locus_tag="VLL95_06435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38535.1"
                     /translation="GWGSNCGGSRCPYHCTGACLPVGRSSRTGITPYSVSAVSAASDT
                     APLSARGWVDSLSTINNRGSPKALN"
BASE COUNT          366 a          433 c          385 g          366 t
ORIGIN      
        1 tcagcagggc agcctggttg gcgttggcca tcgttgccat ttcactcaac gaagccgcct
       61 tcagcgaaag ataaatggga tgtacttcat cctgatcgct gatattgaat ggttccaatc
      121 ggtcggaggc atgactcctg gcaatccagt cgccaagact tcttgccctt actctttccg
      181 cagttcgcag agctgccagc atgtcgccat ccaaggcttg caggagggcc aaatctctac
      241 ccactacctg taaataatct gacaccatgt acgacagctt gtggccaaat gagccccctg
      301 ctgatgccac gctcccacgg atcacctcga attggcgcaa acacgcctcc attcgcaaca
      361 ggaagccttt gggttcctgt gtgtagatgg catgcagatc gaggtaatat ttccacaaac
      421 gctgaaacgg ctctgtctcc ttccgggccg tttcatcact tagcgcttgc tgaagtatct
      481 cccaggtttg ggtatcagca agttcctcca gcagggaggt ggcaatggcg tcagcatcga
      541 gctcacggat cctgggcaaa gcgctgagca tgatggctgt actcaaagtc ttgtcacgtg
      601 aaaataaagc gatgcgatgt gatgccagga aaatgtcttt atcccaggat ttgttgttgc
      661 tcaagaggct gtcccaggca gacccaaatt ttgcagtgag ggcttttgca tcttcctgaa
      721 gaagtttacg ggcttttcct gcatcactgt tgtttgccgc acccttcaga tcattggctg
      781 ccagccatgt atttaccgac acgattcgca taccggtcct gtcgctggag cggcaggtaa
      841 ggatcagggg caggcgatag caaaacactg cggtggccgg ccttcttttt tcacgggcac
      901 tcacgccctg ttttaccagc aattgggcca agtccatcaa tgccttctgc ccgcctgccg
      961 tttgcaattc ttttttacgc aacaaggtat ccatcctgtc gcttcggata tcaatatcta
     1021 tcagcccggt aaagtcggtg gtcatggaag taacggcggt agaatccacc acgcaaaaaa
     1081 ggataccata tcctttctct aaggccagct tctcagaaat ttctctcaaa cgggcggcac
     1141 tctgaccgac tcccaactga ccaagggcta tgaaaacaat caacaataga aatgtgcagg
     1201 agccctggcg gcccgggggt gaaatggctg tcatgtttag ggtggatatg cattcaatgt
     1261 actgaaactg cggcgggcag gcaacttaag ttcacatagc cacacaattc tccatccaca
     1321 tcagccaaac aatcaagcct cagttcaatg ccttcgggct tccacggttg ttaatggtgg
     1381 acaaactgtc cacccatccc cgtgccgaca gtggcgccgt gtcgcttgca gcagacacgg
     1441 ctgaaaccga ataaggggtg attccggtgc gtgaagacct gcctacaggc aggcacgcac
     1501 cggtacaatg gtaaggacac ctactgccac cgcagttgct gccccacccg
//
LOCUS       DATIQF010000390         2271 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_143313,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000390 DATIQF010000000
VERSION     DATIQF010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143313"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..861
                     /locus_tag="VLL95_06440"
     CDS             199..861
                     /locus_tag="VLL95_06440"
                     /inference="COORDINATES: protein motif:HMM:NF016041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HSR38536.1"
                     /translation="MQFEKIHNKGQARLFQSPYLEALTKAHPLVIWGMYIPIMSWLMY
                     HASTAFGFSTIKVWGIWAIGIFSWTLFEYIAHRFLFHMTPTSEAGKRIAYILHGNQHH
                     YPRDKQRLFMPPVPSLILSSSIFGLQYLLLGNIAFMFFPGFLLCYLIYCSMHYAIHAW
                     NPPFQWMKPLWRNHHLHHYKDEHMGFGVSSTLWDLVFGTMLDLKKEKEDKEKVKELMF
                     GK"
     gene            complement(865..1188)
                     /locus_tag="VLL95_06445"
     CDS             complement(865..1188)
                     /locus_tag="VLL95_06445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38537.1"
                     /translation="MDPNTRIQKIDNLLHESSELVVANPEWYHQLKAAVNDLINHDFD
                     ALLQLLYRVDVSESKLRTMLQKLPGNDAAEIITNLLVERHLQKIKSRRENQQRDESIS
                     DEERW"
     gene            complement(1232..2005)
                     /locus_tag="VLL95_06450"
     CDS             complement(1232..2005)
                     /locus_tag="VLL95_06450"
                     /inference="COORDINATES: protein motif:HMM:TIGR02757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HSR38538.1"
                     /translation="MPSSNNIIAFLNEKVDAYNQPSFIAADPVCIPHLFRKKQDIELA
                     GFFAAIFAWGNRTTIIQKSRELMERMDMAPYDFVMHHQPSDLRKLEGFKHRTFNADDL
                     FYFLHFFHAHYSRHKSLEDAFAKWMQPGDATTENALMGFRRYFFSEEHLKRTEKHISS
                     PEFKSSCKRLNMYLRWMVRQDNKGVDFGLWKKIRPAQLICPLDVHVARVAKRFNLLQR
                     KPTDWRAAMELTDYLRKLDPADPVKYDFALFGLGVIEKY"
     gene            complement(2032..>2271)
                     /locus_tag="VLL95_06455"
     CDS             complement(2032..>2271)
                     /locus_tag="VLL95_06455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38539.1"
                     /translation="EGAYCRANSVVEITLAGVTRQFEVPVEFSQQTNGESWLKGSRMF
                     RLQDFNLKSPVKYGGLIKVKNEFVVQFQLSMKRIG"
BASE COUNT          562 a          593 c          510 g          606 t
ORIGIN      
        1 aaccatgtgc actatcctgt agtaacggct gaactgaggc ggctggcggc ccaataccaa
       61 ctgccttacc gggcctaccc cctgctggcc acactgaaaa accactacaa gttgctcaaa
      121 cgaaacggca cccatgaaaa catatttgag gaaacgatgt aacagtttct tcagtattgc
      181 actccttacc tttgcagcat gcaattcgaa aagattcaca ataaaggcca ggctcgtttg
      241 ttccagagcc cgtatctcga agcattgacc aaagcgcatc cactggtgat ctggggcatg
      301 tatatcccca tcatgagctg gctgatgtac catgcctcga ccgcttttgg cttcagcacc
      361 atcaaagtgt ggggcatttg ggccattggt attttcagct ggacattgtt tgagtacatc
      421 gcccaccgct tcctgtttca catgacgcct accagcgaag ccggcaagcg cattgcctac
      481 atcctgcacg gcaatcaaca ccactacccc cgcgacaagc agcggttgtt catgcccccc
      541 gtacccagcc tcattttgtc ctcctccatt tttggcctgc aatacctgct gctgggcaat
      601 attgccttca tgtttttccc gggcttcctg ctgtgttacc tcatctactg cagcatgcac
      661 tatgccattc atgcctggaa cccgcccttc caatggatga aaccactgtg gcgcaatcac
      721 cacttgcatc attacaaaga cgagcacatg ggttttggcg taagctctac cctttgggac
      781 ctggtgtttg gtaccatgtt agatctgaag aaggaaaaag aagacaagga aaaggtaaaa
      841 gagttgatgt ttggtaagta aggattacca cctttcttca tcagaaatag attcatcccg
      901 ctgctggttt tcgcggcggg attttatttt ttgcaggtgc cgctccacca acaggttggt
      961 tatgatttca gccgcatcat tgccgggcaa cttttgcagc atggtcctca gttttgattc
     1021 agacacatct acccggtaca acaactgcag caaagcatca aaatcgtggt tgatcaaatc
     1081 gtttactgca gccttcagtt gatggtacca ctcaggattt gctaccacca gttcactgct
     1141 ttcgtgcaat aagttgtcga tcttttgtat gcgtgtattc ggatccattt ctgtttacat
     1201 ccagcaagtt atcgcatact tgctaggatt ttcaatactt ctctataacg cccaatccaa
     1261 acaacgcgaa atcatatttc accggatcgg caggatcgag ctttcgtagg tagtcggtca
     1321 gttccatggc agcccgccag tcggtaggtt ttcgctgcag caaattgaat cgtttggcta
     1381 cacgggctac gtgcacatca agcggacaga tcagctgtgc cggcctgatc tttttccaga
     1441 ggccgaaatc cacccctttg ttatcctgcc ttaccatcca tcgcaaatac atgttgagcc
     1501 gcttgcagga gcttttgaat tccggcgagc tgatgtgttt ttctgtacgc ttcaaatgct
     1561 cttcgctgaa aaagtaacgc ctgaaaccca tcaatgcatt ttctgtcgtt gcatcaccgg
     1621 gttgcatcca tttggcaaag gcatcttcca gacttttatg ccggctgtaa tgcgcatgaa
     1681 aaaaatggag gaagtaaaac agatcatcag cattaaaggt ccggtgcttg aatccttcca
     1741 gtttgcgcag atcggaaggc tggtgatgca tcacgaaatc gtaaggcgcc atatccatgc
     1801 gctccatcag ttcgcggctt ttctgaatga tggtggtgcg attgccccag gcaaaaatgg
     1861 cggcgaagaa acccgctaat tcaatgtcct gcttttttcg aaacaaatgg ggaatgcata
     1921 cgggatcggc agcaataaaa gaaggttgat tgtaagcatc aaccttctca tttaagaatg
     1981 caatgatatt gttggaggaa ggcacgccac aaaaataagt ggcagcactg ctcagccgat
     2041 gcgtttcatg gaaagctgga attgaaccac gaattcattc ttcactttta tcaggccgcc
     2101 atacttcacc ggtgatttca ggttgaaatc ctgcaggcgg aacatgcgtg aacctttaag
     2161 ccagctttcg ccattggttt gctggctgaa ttcaaccggt acttcaaact gacgcgtcac
     2221 tcctgccagc gtgatctcta ccacgctgtt ggcccggcag taagcacctt c
//
LOCUS       DATIQF010000391         3249 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_219238,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000391 DATIQF010000000
VERSION     DATIQF010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3249)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3249)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3249
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219238"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..203
                     /locus_tag="VLL95_06460"
     CDS             <1..203
                     /locus_tag="VLL95_06460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38540.1"
                     /translation="QQQFEVALLIDQPTTQGIAEAMNKLLNDTVLYERLRQSALNAGS
                     QWNWDREAGRLVAFWNEILPLH"
     gene            227..1405
                     /locus_tag="VLL95_06465"
     CDS             227..1405
                     /locus_tag="VLL95_06465"
                     /inference="COORDINATES: protein motif:HMM:NF025072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSR38541.1"
                     /translation="MKEKHLHIICLDVPYPVDYGGVFDLFYKIKSLHEAGVKIHLHCF
                     EYGRGKQPILEEYCVEVNYYERIPGFRTITGGLPYIVASRANKQLLENLQKDDYPILM
                     EGIHCTYFVWNGDLPKNRCFVRLHNVEHLYYHQLAETTQSMFKKVYFKRESKLLKEYE
                     SAMADKATFWTVAESDLQVFNKELGYSSVDFLPLYLPEFHPEWHGATGNFCLYHGNLS
                     VPENEYAATWLLEEIFSTLEIPFVVAGKNPSAKLEKLAHTHPHTCIVANPSDKEMQEL
                     IKKAQVNILPSFNNTGIKLKLINALHYGRHVLVNDAGVEGSNLRSVCEIANSKEDTIH
                     AIERLFNQPFNYHNFAERTEVLKNLFNNQRNASQMINWIFEKEPTIPGVVAARFEIRA
                     "
     gene            complement(1440..2135)
                     /locus_tag="VLL95_06470"
     CDS             complement(1440..2135)
                     /locus_tag="VLL95_06470"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSR38542.1"
                     /translation="MAEEIVIQLKNVNIYQGGALILNDVNLEVKRGEFVYLVGKTGTG
                     KSSLLKTMYGELPLKEGSGTVVGHDLKSLTWKTIPFLRRDLGVVFQDFQLLTDRNVKE
                     NLRFVLKATGWKDENMMEAKINDVLEKVGLKSKGFKMPFEMSGGEQQRVDIARALLNS
                     PKLLLADEPTGNLDPETSDEIMALLMSISKDYGMAVIMATHDYIVINKFPARILRTEK
                     GKVYDSANQYAEK"
     gene            complement(2218..>3249)
                     /locus_tag="VLL95_06475"
     CDS             complement(2218..>3249)
                     /locus_tag="VLL95_06475"
                     /inference="COORDINATES: protein motif:HMM:NF014788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIR synthase-related protein"
                     /protein_id="HSR38543.1"
                     /translation="WVNVMHADGAGTKSILAYMYWKETGDISVWKGIAQDAIVMNLDD
                     LLCAGIHDNIVFNSTIDRNKALIPGEVLQEIINGSQELFDVLAGFGVNIAYLGGETAD
                     VGDVVRTVAVNGTMSVRWPKDKIVTNEKIMPGDVIVGLASFGQAAYESAYNSGIGSNG
                     LTSARHDVLSKHYAEAFPMTFEPSLSDEVVYIGKYRMTDVVIDEGHSIGQLLLSPTRT
                     YAPVMKELLAEHFDKIHGLVHCSGGGQTKCMKFVPDGVRVVKDNLFEAPYIFEIIKDC
                     SGSDWREMMQVFNMGCRLEIFCSPADAQIMIDTAAKYGIAARVTGRVEAAAGKSLQIN
                     YAGETIIFD"
BASE COUNT          841 a          860 c          707 g          841 t
ORIGIN      
        1 tacagcagca gtttgaggta gcgctcctga tagaccagcc caccacccaa ggcattgcag
       61 aggctatgaa caaattgcta aatgacactg ttctgtatga gagattgcga caatctgcct
      121 taaatgctgg ttcacaatgg aattgggacc gggaagccgg aagattggtt gcattctgga
      181 atgaaatttt gcctcttcac tgacacccat taaagcacca tctcctttga aagagaagca
      241 ccttcatatt atttgcctgg atgtgcccta ccctgttgat tacggtggcg tgttcgacct
      301 attctataaa atcaaatccc tgcatgaggc cggggttaaa atccacctcc attgttttga
      361 atacggccgg ggaaaacaac ccatactgga ggagtattgc gtagaggtga actactacga
      421 acgcataccc ggtttcagaa ccattacggg tggccttcct tacatcgtag ccagccgggc
      481 caataagcag ttattggaaa acctgcaaaa agatgactac cccattctta tggagggcat
      541 tcattgtacc tattttgtct ggaatggaga tttgcccaaa aatcgatgct tcgttcgcct
      601 gcacaacgtc gagcatttgt attatcatca gttggccgaa accacccagt cgatgttcaa
      661 aaaggtgtat ttcaaaagag aaagcaaact gttgaaggaa tatgaatctg ccatggccga
      721 caaggccaca ttctggacag tagccgaaag cgacctgcag gtcttcaaca aagaattagg
      781 atacagcagc gtagatttcc tgcctttata cctccctgaa ttccatccgg aatggcatgg
      841 tgccacgggt aatttttgct tgtaccacgg caacctcagt gtgcctgaaa atgaatatgc
      901 tgctacctgg ctgcttgagg aaattttttc tacacttgaa atcccttttg tggtagcggg
      961 caaaaaccca tctgccaaac tggaaaaact ggcccatact catccgcata cctgcatagt
     1021 agccaacccc agcgacaagg aaatgcagga actgatcaag aaagcgcagg taaatattct
     1081 gccttcattc aataacactg ggatcaaact taaactcatc aatgcgctgc attacgggag
     1141 acatgtgctg gtgaatgatg ccggcgtgga gggcagcaac ctgcgcagcg tttgtgaaat
     1201 agccaatagc aaagaagata ccattcatgc cattgaaaga ctcttcaatc aacccttcaa
     1261 ttaccacaac ttcgcagaga ggacagaggt attgaaaaac ctgttcaaca accagagaaa
     1321 tgcttcccaa atgatcaact ggatctttga aaaagaacca accattccgg gcgtagtggc
     1381 agcacgattt gaaataaggg cctgattgaa aaccctttgg cagcaagcct tttcaccgat
     1441 tacttctcgg cgtactggtt ggcgctgtcg taaacttttc ctttttcggt acgcaatatc
     1501 ctggcaggga atttattgat cacaatgtaa tcatgcgtag ccatgatcac tgccatgccg
     1561 tagtctttgc tgatgctcat cagcaaggcc atgatttcat cgctggtttc cggatccagg
     1621 ttgccggttg gttcatcggc caacaacaac ttgggcgagt tgagcaaagc ccgggcaata
     1681 tcaacccgct gctgttcgcc accactcatt tcaaatggca ttttgaatcc tttgctcttg
     1741 aggcccactt tttccagcac atcgttgatc ttggcctcca tcatgttttc atctttccag
     1801 cctgtggcct tcagcacaaa gcgaaggttt tccttcacgt ttcggtctgt cagcaattga
     1861 aaatcctgga acaccacacc aagatcacga cgcaaaaagg gaatggtctt ccaggtgagc
     1921 gatttcaggt catgccccac cacggtgcca cttccttcct tcaaaggcag ttcgccatac
     1981 atggttttca gcagcgaaga ttttccggtg cctgtctttc ctactaggta tacaaactca
     2041 ccacgcttca cttccaggtt cacatcgttc aggatcaaag cgcctccctg gtaaatattc
     2101 acattcttca gttgtattac tatttcttcg gccatagtgc tgtattcttt atttcatttt
     2161 gctgtaaaaa agcatcgctg cccctgtgca gcatgcaaac aagtgtataa aactctgtta
     2221 gtcaaatata attgtttcgc ctgcgtaatt gatttgcaaa cttttaccag ccgccgcttc
     2281 tacccggccg gttacccggg cagcaatgcc gtatttggcc gccgtgtcaa tcatgatttg
     2341 cgcatccgcc ggtgaacaga agatttccag cctgcagccc atattgaata cttgcatcat
     2401 ttcccgccaa tccgatccgc tgcagtcttt gatgatctca aaaatatacg gcgcttcaaa
     2461 caggttatcc ttaaccaccc tcactccatc gggtacaaac ttcatgcact tggtttggcc
     2521 accgccactg cagtgtacca ggccgtgaat cttgtcgaag tgctctgcca gcagctcctt
     2581 cattaccggt gcataggtac gtgtaggact cagcaacagc tgaccaatgg aatggccctc
     2641 atcgatcacc acatctgtca tccggtattt accaatgtat accacctcat cgctgaggct
     2701 gggctcaaag gtcatgggga aagcttcggc gtagtgcttg ctcagcacat cgtggcgggc
     2761 actggtaagc ccattgctgc caatgccgct attgtaggcg ctctcataag ctgcctgccc
     2821 aaatgaggcc aggcccacaa tcacatcacc cggcattatc ttttcgttgg tcacgatttt
     2881 atccttgggc cagcgcacac tcatggtgcc attaaccgcc actgtgcgca ccacatcacc
     2941 cacatcagcc gtttcgccac cgaggtaagc gatatttaca ccaaaaccgg ccagcacatc
     3001 aaacagttcc tgcgagccat tgatgatttc ctgcagcact tcgccgggga tcagcgcctt
     3061 attgcggtcg atggtggaat tgaaaacgat attatcgtga atgccggcac acagcaaatc
     3121 gtcgaggttc atcacaatgg catcctgtgc gatgcccttc catacgctga tgtcgccggt
     3181 ttctttccag tacatgtaag cgagaatact tttagtacct gcgccatcgg cgtgcatcac
     3241 attcaccca
//
LOCUS       DATIQF010000392         1912 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_36620, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000392 DATIQF010000000
VERSION     DATIQF010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1912)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1912
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36620"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1354)
                     /locus_tag="VLL95_06480"
     CDS             complement(<1..1354)
                     /locus_tag="VLL95_06480"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0017000 - antibiotic biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HSR38544.1"
                     /translation="MRYLLLVLLLPVMASAQKFTPAEVTKWKQQAQRVTIIRDKWGIP
                     HVYGKTDADAVFGLLYAQCEDDFPRVEANYIEKLGRQAEVAGSKMLYEDLLHRLVLDS
                     AAAKKDFASAPAWLKKLCQAFADGINYYLATHPKVKPALLTRFEPWWPLMWTDGSIGA
                     ISTGGATEQELQGFYTGEPVAAAAPKLDDENEIGSNGFAFSPKLTQSGKAILYINPHV
                     TFYFRPEVQMVSEEGLNAYGAVTWGQFFIYQGFNPNCGWMHTSSQADVADLYMEKVKA
                     ADGKFVYEYEGNTKPVDEKQISITVNEAGTKSSKTIRAFFTHHGPVVAKRNGQWLALK
                     HHNRSLQGLMQSWLRTKAKSFAEFKQIMDMKENTSNNTVYADREGNIAYWHGNFMPKR
                     DARLNWNNPVDGSTAATEWNGLHTVDETVHLYNPESGWIQNCNQTPFTSSGSSSPKRE
                     N"
     gene            complement(1395..>1912)
                     /locus_tag="VLL95_06485"
     CDS             complement(1395..>1912)
                     /locus_tag="VLL95_06485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38545.1"
                     /translation="AGVDYEIKLNNGLYELLINETGAQALQKNMDWLPPIEYSKEELS
                     FGEQVMKQAGIAFNGITGKPKPLGKPKPDPDGGSTDVGDVSYIVPQLSLEVVTAPKGA
                     PWHSWVVVACGGMSIGHKGILYASKALGTTMVDLFENEQLRKDIRTEFEKRKGSEVWK
                     AMLPDGPPPVN"
BASE COUNT          389 a          522 c          459 g          542 t
ORIGIN      
        1 agttttcacg cttggggctg ctgctgcccg atgatgtaaa gggtgtttga ttacagttct
       61 gtatccagcc actttccggg ttgtacaaat gcacggtttc gtccacggtg tgcaggccgt
      121 tccattcggt agcagccgta cttccatcca ctggattgtt ccagttcaat cgggcatcac
      181 gcttcggcat aaagttgcca tgccagtaag caatgttgcc ttctctatcg gcatacactg
      241 tgttattgct ggtgttttcc ttcatgtcca tgatctgttt gaactcggca aagcttttcg
      301 ccttggtgcg cagccagctt tgcatcaggc cttgcaggct gcggttatgg tgcttcagcg
      361 ccagccattg gccattgcgt ttggctacca ctggtccatg atgcgtgaag aaggcccgaa
      421 tggttttgct tgactttgtg ccagcctcat tcaccgtgat gctgatctgt ttttcatcca
      481 ccggcttcgt gttgccttcg tactcgtata cgaactttcc atcggccgct tttactttct
      541 ccatatacag gtcggctacg tcggcctggc tactggtgtg catccaacca caattgggat
      601 tgaagccctg gtaaataaaa aactgccccc acgttacagc gccgtatgcg ttcagccctt
      661 cttcgcttac catttgtact tcgggccgga agtaaaaagt aacatgcggg ttgatgtaga
      721 gtatggcctt gcccgattgt gtcagttttg gagaaaatgc aaagccgttc gaaccaattt
      781 cattttcatc atccagtttg ggtgccgcgg cggctaccgg ctcaccggtg taaaagcctt
      841 gcaattcctg ctcggtagcg ccaccggtgc tgatggcgcc aatgctgcca tcggtccaca
      901 tcagcggcca ccatggctca aaacgggtga gcaaggcagg ttttaccttg ggatgcgtgg
      961 ccaggtaata attgatgcca tccgcaaagg cctggcataa ttttttcagc catgccggtg
     1021 cagaagcaaa atctttcttg gctgccgcac tgtccagcac cagccggtgc agcaaatctt
     1081 cgtacagcat tttgctgccg gccacttcgg cctgcctgcc cagtttttca atgtagttgg
     1141 cttccactct ggggaaatca tcctcgcatt gcgcatacag caaaccaaac accgcgtcgg
     1201 catctgtttt gccatacaca tgcggtatac cccatttgtc gcggatgatg gtgacccgct
     1261 gtgcctgctg tttccatttg gtcacttcag caggggtgaa tttttgagcc gatgccatta
     1321 ccggcaacaa caaaacaagc aacaagtatc tcataaaact atattcacaa ttcatcattc
     1381 ctaattccta attcttaatt aaccggtgga ggtccatcag gaagcatggc tttccatact
     1441 tcgctgcctt tgcgcttttc aaattctgtg cggatgtctt tgcgcagttg ttcgttttca
     1501 aacaggtcga ccatggtagt gcccaatgcc tttgatgcat acagaatgcc tttgtggccg
     1561 atgctcatgc caccgcaggc tactaccacc cagctgtgcc agggagcgcc tttgggtgcc
     1621 gtcactacct ccagcgataa ttgaggcact atgtagctaa catcgcctac atcggtgctg
     1681 ccgccatcag ggtcgggctt cggtttgccc aatggctttg gtttgccggt gatgccgttg
     1741 aaggcaatgc ctgcctgctt catcacctgt tcaccaaaac tcagttcttc tttgctgtat
     1801 tcaatgggcg gcaaccagtc catgtttttc tgcaaggcct gcgccccggt ctcgttgatg
     1861 agcaattcat acaacccatt gttgagtttg atttcataat ccacaccggc ca
//
LOCUS       DATIQF010000393         5949 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_219241,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000393 DATIQF010000000
VERSION     DATIQF010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5949
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219241"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..788)
                     /locus_tag="VLL95_06490"
     CDS             complement(<1..788)
                     /locus_tag="VLL95_06490"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: protein motif:HMM:NF000801.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016891 - RNA endonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0042780 - tRNA 3'-end processing [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HSR38546.1"
                     /translation="MYGLTILGNNSALPAYDRHPTAQALHWGDQIFLIDCGEGTQMQL
                     SRFKIRRSRIQHIFISHLHGDHYFGLVGLITSMGLMGRDMPLHIYGPKGLEPIIQLQL
                     SAADTRLPYPLHFHSITGNGLLLDDKTVTVHCFAVKHRIPCFGFVFTEKKAPRKLNKE
                     AAIAAGIPQIFYQRLQWGEDYVAKTGEVIANESVTFAANPPLSYAYCADTLFDPSLCQ
                     HIQNASLLYHEATFLEEMKDKAAERFHATARQAATIASQAGARR"
     gene            complement(864..1244)
                     /locus_tag="VLL95_06495"
     CDS             complement(864..1244)
                     /locus_tag="VLL95_06495"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HSR38547.1"
                     /translation="MDVKIDTKEKFYEVQLLEPHLTANMTADLNDLLSELQNTPPKNV
                     VLNLKDVNKIDPEAAVMLAKCQGEYYDNSHSFVMCQLSGTVETALDEMGVLEVLNITP
                     TLSEAWDIVQMEEIERELLDGLED"
     gene            1460..4012
                     /locus_tag="VLL95_06500"
     CDS             1460..4012
                     /locus_tag="VLL95_06500"
                     /inference="COORDINATES: protein motif:HMM:NF019344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HSR38548.1"
                     /translation="MDGNFSPQVKEIISYSREEALRLGNDFIGTEHLLLGLIRDGENS
                     AIRVLKQLNVDLYELRKEVEMAVRDKNGKNIANINSLPLTKQAEKVIRVTVLEAKSLK
                     SSTVESEHLMMSILKNKENIATQILMQYDVDYDSFKNEFTMSQGNDINPRSEYSDDDN
                     DEFDEEKKGGSYGSGSKQGRQQQGGQKSKTPVLDNFGRDITRMAEQGTLDPIVGREEE
                     IERVSQILSRRKKNNPILIGEPGVGKTAIVEGLALRIVQRKVSRVLFDKRVISLDLAA
                     LVAGTKYRGQFEERMKAIMNELEKNRDVILFIDEIHTIVGAGGASGSLDASNIFKPAL
                     ARGELQCIGASTLDEYRMYIEKDGALDRRFQKVMVEQPSVDETIQILQNIKSKYEDYH
                     NVTYSDDAIDACVKLSDRYMTDRLLPDKAIDVMDEVGARVHLKNINVPQNILDLEKRI
                     EEIKAEKNKVVKSQRFEEAASLRDTEKRLGEELEKAKNEWEEESKHKRYPIDEENIAE
                     VVSMMTGIPVKRMVQAETEKLRRMSDDMRDMVIGQDEAIQKVVKAIQRNRVGLKDPKK
                     PIGTFIFLGPTGVGKTELARALARYLFDSEDSLIRIDMSEYMEKFTVSRLIGAPPGYV
                     GYEEGGQLTEKVRRKPYSVILLDEIEKAHPDIYNILLQVLDDGQLTDGLGRKVDFKNT
                     LIIMTSNIGVRQLKDFGEGVGFATASRVQNQDENNKAVIEKALKRTFSPEFLNRIDDV
                     IIFNSLTKENIFSIIDILMKGVMKRLNSLGFELQLTPEAKDFIAEKGYDQQFGARPLH
                     RAIQKYLEDPLAEEILNMNIKQGDILEAGFDKENQKIVFTLKGKETQVEEKA"
     gene            4094..4807
                     /gene="cmk"
                     /locus_tag="VLL95_06505"
     CDS             4094..4807
                     /gene="cmk"
                     /locus_tag="VLL95_06505"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: protein motif:HMM:NF014300.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - cytidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HSR38549.1"
                     /translation="MSAAMASDICGMGNIIVTIDGYSSCGKSTLAKKLAAKLNYRYID
                     SGAMYRAITLYFLRNQVNWNDHAAVAEALKNISLEFFVNPENGKTEIYLNGENVEYVI
                     RDLVVAEKVSEVAAVKEVREFAVAEQQKLGAGKGIVMDGRDIGTTVFPNAELKIFLMA
                     DAAVRVARRFKELFEKNPAVTLEEVRHNLEMRDYIDSHREISPLRKADDALVLDNSEL
                     TPEETLDKAYELVMAHCQP"
     gene            complement(4804..>5949)
                     /locus_tag="VLL95_06510"
     CDS             complement(4804..>5949)
                     /locus_tag="VLL95_06510"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: protein motif:HMM:NF009911.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HSR38550.1"
                     /translation="KDFSPTLLDFGTIKIYLARHFGFCYGVENAIEIAYRCVEENPGK
                     RIFLLSEMIHNPQVNADLQSHGIQFLQDSYGKTLVPFESLTPEDVVIIPAFGATLAIE
                     EKLTSLGISPHKYNTTCPFVERVWSRGEQLGDKGYSLVIHGKPQHEETRATFSRASSH
                     SPAVIVNNMQETIELGQYIIGEKDPAGFYEKFKGRHSEGFNVTRDLQHFGVINQTTQL
                     ATDTQAIADYLKALVEKHFGEKDAEGKKRFADTRDTLCYATNDNQTAVRELLETKADL
                     ALVVGGYNSSNTSHLVELCEEKLPTYYIKEASSLVNENSIIHFDWRNKVELSSANWLK
                     QNQPLTVLLTSGASCPDALVEEVIERLLELVPGSKGLDTAKAAFEVA"
BASE COUNT         1593 a         1395 c         1555 g         1406 t
ORIGIN      
        1 aatctcctgg ctccggcctg ggaagctatg gtagctgctt gccgggcggt ggcatgaaat
       61 cgctctgctg ctttgtcttt catttcctcc aggaaggtgg cttcgtggta cagcaggctg
      121 gcattttgaa tatgctggca caaggaagga tcaaacaagg tgtcggcaca ataagcgtag
      181 ctcaaaggag ggttggctgc gaaagtgacg ctttcattgg caatcacttc acccgttttg
      241 gcaacatagt cttcgcccca ttgcaggcgc tggtaaaaga tttgcgggat gccggcagca
      301 atagcggctt ccttattgag tttccggggc gccttctttt ctgtgaacac aaacccgaaa
      361 caggggatgc gatgtttcac cgcaaaacag tgaaccgtta cggttttatc atccagcagc
      421 aagccattcc cggtaatgct atgaaagtgc aagggatagg gtagccgggt atcggcagcg
      481 ctgagctgta attgtataat gggttccagg cctttgggcc catagatatg cagtggcatg
      541 tcgcggccca tcaggcccat ggaggtgatg agacctacca gcccgaaata atggtcacca
      601 tgaaggtggc tgatgaaaat gtgttgaatg cggctccgcc gaattttgaa ccgggaaagt
      661 tgcatttgcg tgccttcgcc acagtctatc agaaagatct ggtcgcccca gtgcagcgcc
      721 tgtgcggtgg ggtggcggtc gtatgcgggt aatgctgagt tgttacccag tatggtaagg
      781 ccgtacatgt tgtagcaggt gtgtttggtg ggtagacagc attagtgccc aaactgctgc
      841 aaatcaaata aatatgagct tgtctaatcc tccaggccgt ccagcagttc ccgttctatt
      901 tcttccattt gcacaatgtc ccaggcctcg ctcagcgtag gggttatgtt cagtacttcc
      961 agtaccccca tttcgtccaa tgctgtttcc accgttccgc tcaactgaca cattacaaat
     1021 gagtgactgt tgtcgtaata ctcaccctgg catttggcca gcatcacagc agcttcggga
     1081 tcaatcttat taacatcctt caggttgagt actacatttt ttggcggagt gttttgcaat
     1141 tcagacagca aatcgttcag gtcggctgtc atattagcag ttaaatgcgg ctccaggagc
     1201 tgtacttcgt aaaatttctc cttggtatcg attttgacgt ccattgttga atagtgaata
     1261 agttttgtga atgttttgga ggaatgtatt gactggaaac cgaaattgaa tcacaaacgt
     1321 agttataagt aacagatacc ctgaagaggc cggataatca gtgtgacaat aagcttgctc
     1381 attccacatc tgtgcattta acctagcagg ggaggcccga aaataatctt taatattgta
     1441 agcaacagga gagcaagtta tggacggaaa tttttcaccc caggtaaagg aaataatatc
     1501 ctacagcaga gaagaagcgt tgcgtttggg caacgacttc attggcacag aacatttatt
     1561 gctcggcctt atccgcgatg gcgaaaactc ggccatccgg gtgctgaagc aattgaatgt
     1621 ggacctctat gagcttcgca aagaagtgga aatggcggtg cgtgacaaaa acggaaagaa
     1681 cattgccaat atcaacagcc tgccattgac caagcaggcg gagaaagtga ttcgcgttac
     1741 cgtgctggaa gcaaaatcac tcaagagctc caccgtggaa agtgaacacc tgatgatgag
     1801 catcctcaaa aacaaagaga atattgccac gcaaattctg atgcagtatg atgtggatta
     1861 cgattcattc aagaatgaat tcaccatgtc gcagggcaac gacatcaacc cgcgttctga
     1921 atactccgat gatgacaacg acgagtttga tgaggagaag aaaggaggca gctatggcag
     1981 cggcagcaaa caaggtcgtc aacaacaggg cggtcagaaa agcaaaacgc cggtgctcga
     2041 caatttcggc cgcgacatta cccgcatggc agagcagggc acccttgacc caattgtggg
     2101 tcgggaagaa gaaatagaaa gggtttcgca aatcctttca cgcaggaaga agaacaaccc
     2161 catcctgata ggcgaacccg gtgtgggcaa aaccgctatc gtggaaggcc ttgccctgcg
     2221 cattgttcag cgcaaagtga gtcgtgtgtt gttcgacaaa cgagtgatca gcctcgacct
     2281 tgcagcgctg gtagcaggca ccaagtaccg tggccagttt gaagagcgca tgaaagccat
     2341 catgaacgaa ctggaaaaga accgtgacgt cattcttttc atcgatgaaa ttcataccat
     2401 cgtaggtgct ggtggcgcca gcggctcgct ggatgcatcc aacatcttca agccagcctt
     2461 ggctcgtggt gaactccaat gcattggcgc atctacgctt gatgaatatc gcatgtacat
     2521 tgagaaggac ggtgccctcg atcgtcgttt ccaaaaagta atggtagagc agccttcggt
     2581 ggatgaaacc atccagatcc tgcaaaacat caagagcaag tacgaggatt accacaacgt
     2641 aacctacagc gacgatgcca ttgatgcctg cgtgaaactg agtgatcgtt atatgaccga
     2701 tcgcctgctg cccgacaaag ccattgacgt aatggatgaa gtgggcgcca gggtgcacct
     2761 caagaatatc aatgtgccgc aaaacatcct cgatctcgaa aagcgcattg aagaaataaa
     2821 agccgagaag aacaaggtgg tgaagagcca gcgcttcgaa gaagccgctt cacttcgcga
     2881 tactgaaaag cgcctgggtg aagaactgga aaaggccaag aacgaatggg aagaagaaag
     2941 caagcacaag cgttacccca ttgatgagga gaacattgcc gaagtggtga gcatgatgac
     3001 gggcattccc gtgaagcgca tggtgcaggc cgaaaccgag aagctgcgtc gcatgtcgga
     3061 cgatatgcgg gacatggtga ttggccagga cgaagccatt caaaaagtgg tgaaagccat
     3121 acagcgcaac agggtgggct tgaaagatcc caagaagcca attggcacct tcattttcct
     3181 gggaccaacc ggcgtcggca aaaccgaact ggcacgtgca ttggcccgct acctgttcga
     3241 cagcgaagat tcgctcatcc gcattgacat gagcgaatac atggagaagt tcactgtaag
     3301 ccgactgatt ggcgctcctc ccggctacgt aggatacgaa gaaggcggcc aactgactga
     3361 aaaggttcgc cgcaagccat acagtgtgat cctgttggat gaaattgaaa aagcgcaccc
     3421 cgatatctac aacatattgc tgcaggtgct cgatgatggc cagttgacag atggtcttgg
     3481 tcgcaaagta gatttcaaga atacgctcat cattatgact tccaacatcg gcgtacgcca
     3541 gttgaaagac tttggtgagg gcgtgggctt cgctacagca tcccgtgtgc aaaaccagga
     3601 tgagaacaac aaggcggtga ttgaaaaggc cctgaagcgc accttcagcc ctgaattcct
     3661 gaaccggatt gatgatgtga tcatcttcaa cagccttacc aaggaaaaca tcttctcgat
     3721 catcgatatc ctgatgaaag gcgtgatgaa gcggctcaat tcactgggct tcgagttgca
     3781 actgacgcct gaagccaaag acttcatagc cgaaaagggt tacgatcagc agtttggcgc
     3841 ccgtccgttg cacagggcca tccagaagta cctggaagat cccctggcag aggaaattct
     3901 gaatatgaac atcaagcagg gggatattct tgaagctggc tttgacaaag agaaccagaa
     3961 gattgtgttc accctcaaag gcaaggaaac acaggtagag gaaaaggcct gattccaaaa
     4021 aaaatgaacc aacagcgtcg gcagcattaa gctgtcgacg cttttttatg gccagggtct
     4081 ccgaaaatta tttgtgtcgg cagccatggc ttcagacatt tgcggcatgg gcaacatcat
     4141 cgttaccatt gatggttatt cttcgtgtgg gaaaagcacg ctggcaaaaa aactggcggc
     4201 aaaactgaat taccggtaca tcgacagcgg tgccatgtat cgggccatca ccctttactt
     4261 tttacgcaac caggtcaatt ggaacgatca tgctgccgta gccgaagcat tgaaaaatat
     4321 ttcccttgaa ttttttgtga accctgaaaa cgggaaaaca gaaatttatt tgaacggaga
     4381 aaacgtagaa tacgtaatcc gtgatttggt ggtggcggaa aaggtgagtg aagtggcagc
     4441 ggtgaaagag gttcgtgagt ttgcagtggc cgaacagcaa aagctggggg caggcaaagg
     4501 catcgtgatg gatggccgcg acattggcac caccgttttc ccgaatgccg aacttaaaat
     4561 attcctgatg gctgatgcgg ctgtgcgagt ggcccgccga ttcaaagaat tgtttgaaaa
     4621 gaacccggcc gttacgctgg aagaagtgcg gcacaacctg gaaatgaggg attacatcga
     4681 cagccatcgc gaaataagcc ccctgcgcaa agcagacgat gccctggtgc tcgacaattc
     4741 tgaactgaca ccagaagaaa cgctggacaa agcatacgag ttggtgatgg cgcattgcca
     4801 gccttaagcc acttcaaaag cggccttagc ggtatccagc cctttggaac cgggcaccaa
     4861 ttccagaagt cgttcaatca cttcctctac caaagcatcc gggcaactgg ctccactggt
     4921 cagcaatacg gtgaggggtt gattttgttt caaccagttt gctgagctca attctacttt
     4981 gttgcgccag tcaaaatgaa tgatgctgtt ttcgttgacc aggctactgg cttctttgat
     5041 gtaataggtg ggtagttttt cttcgcacaa ttcaacgagg tgactggtat tgctgctgtt
     5101 gtatccgccc accaccaatg ccaaatccgc ttttgtttcc agcagttcac gcactgcagt
     5161 ttggttgtca ttggttgcat agcacagcgt atcccgtgta tcagcaaagc gtttctttcc
     5221 ttccgcatct ttctcgccaa aatgcttttc caccaatgct ttcaaataat cagcaatggc
     5281 ctgcgtgtct gttgccagtt gggtagtttg gttgatgaca ccaaaatgct gcaaatccct
     5341 cgttacattg aaaccttcac tgtggcggcc tttgaatttt tcatagaacc cggcagggtc
     5401 tttttcgcca ataatgtatt ggcccagttc aatggtttcc tgcatgttgt tcacaatcac
     5461 cgccggcgag tgactcgaag ccctggagaa tgtagcccgg gtttcctcgt gctgcggttt
     5521 gccatgtatc accaggctgt atcctttgtc gcccaattgt tcgcccctgc tccaaactct
     5581 ttctacaaag gggcaggtgg tgttgtattt gtggggtgag atcccgagac tggtcaactt
     5641 ttcctcgatt gccaaggtgg caccaaaagc agggatgatg acaacgtctt cgggcgtaag
     5701 cgactcaaac ggcaccagcg ttttcccgta agagtcctgc aggaattgga tgccatggct
     5761 ttgcaaatcg gcattcacct gcgggttgtg gatcatctcg ctcagcagga aaatgcgttt
     5821 gccgggattt tcttccacgc atcggtaggc aatttcaatg gcattttcca caccatagca
     5881 aaaaccgaaa tggcgggcca ggtatatttt gatggttcca aagtcaagca gggttggaga
     5941 gaagtcttt
//
LOCUS       DATIQF010000394         4270 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_265021,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000394 DATIQF010000000
VERSION     DATIQF010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4270
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265021"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(207..1046)
                     /gene="prmA"
                     /locus_tag="VLL95_06515"
     CDS             complement(207..1046)
                     /gene="prmA"
                     /locus_tag="VLL95_06515"
                     /inference="COORDINATES: protein motif:HMM:NF001785.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008276 - protein methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006479 - protein methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HSR38551.1"
                     /translation="MQIQEVYAQFTIDVTNADIRDVLVAELSLLGIDAFEEQEDKLVA
                     SGLSRQVLVEEVVDLLKSFTLTYQFTEVRNENWNAQWESSFEPVLVDDFAGVRASFHK
                     PLSTVRHEIVITPKMSFGTGHHATTWLMMKEMSTIGFEGRSVLDFGTGTGVLAILAER
                     LGASGVLAIDNDEWSIKNAKENLADNGCRLVELELADAIPPGKPFDVILANINKHILL
                     QHGASMAAATKAGGTWLLSGLLEADEPELLQMATSVGMNHLRTLRRNGWIALHFRKKV
                     NIC"
     gene            complement(1139..3286)
                     /gene="pnp"
                     /locus_tag="VLL95_06520"
     CDS             complement(1139..3286)
                     /gene="pnp"
                     /locus_tag="VLL95_06520"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR03591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HSR38552.1"
                     /translation="MLTQPHSVVINTGNDKPITISTGRLARQADGAALVQCGNAYLLA
                     TVCASKEPRPGQSFFPLTVDYQEKFASAGRIPGSFFKREGRLSDYEVLISRLIDRALR
                     PLFPEDYLCDVQVLVTLISSDPEVMPDALSCLAASAALAVSDVPIQEIISEVRIGRLN
                     GEYVVNPTRSQMKDCDMDFIIAATSKNIMMVEGEAKECQEEDLVKALEVAHNAVRLQI
                     AAQEELRSKVGVTDKRDFSKPYRNAELEQKIKDLAKDKMYAIAKSASAKHERSDAFSK
                     LFEEVEAALGELSDEDAPLVGHYLGELQYHVVRDMILDDRIRLDGRNLTTVRPLDMMV
                     DVLPSPHGCALFTRGETQSLTTVTLGTPLDELLIESAATSDYTKFILHYNFPPFSTGE
                     VKPMRGPGRREVGHGNLAMRSLKQMMPGNEYPYTVRVVSDILESNGSSSMATVCAGSL
                     ALMDAGIPVSKHVSGVAMGLITRSSDGKYAILTDILGDEDHLGDMDFKVTGTRDGICG
                     VQMDIKIDGLSMDVMREALAQARQGRLHILDAMYAAMPSAREEVKPHSPRMVKMFIDK
                     EFIGAVIGPQGKVVQEIQKVTGTTITIEEKNNMGEVSIFGTNKEGVDNAERWVKGIVA
                     VPTVGDVYDATVKSIMPYGAFVEFLPGKQGLLHISEVTWKRLETLEGILKEGDQVKVK
                     LTGTDPKTGKFKLSRKVLLPKPEMKQEGSSENQ"
     gene            complement(3429..3701)
                     /gene="rpsO"
                     /locus_tag="VLL95_06525"
     CDS             complement(3429..3701)
                     /gene="rpsO"
                     /locus_tag="VLL95_06525"
                     /inference="COORDINATES: protein motif:HMM:TIGR00952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HSR38553.1"
                     /translation="MPYLTVEKKAKIFETYGGNAKNTGSIEGQIALLTERISALSAHL
                     QQNKKDFSTHRGLMKLVGQRKRLLTYLSKHNLQGYRELIEKLGLRK"
     gene            3832..>4270
                     /locus_tag="VLL95_06530"
     CDS             3832..>4270
                     /locus_tag="VLL95_06530"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR38554.1"
                     /translation="MPAPHIVFTVTNDLNYDQRMQRICTSLAEAGYEVTLVGQESSDS
                     KPIENQLFKQERLPIRHQKGKLFYWEYNRKLYKWLEALAKRSSGQPLALCAIDLDTII
                     PCYLVSKKFNLPRVYDAHELFTELTEVKRRPWIHAAWKWVERRM"
BASE COUNT         1117 a         1091 c          967 g         1095 t
ORIGIN      
        1 atattgcctg atatctatac cgaagaaata cttacttacc caaactgctg ttggaataga
       61 tccaatcagg taagcaatta caatcaacaa aaactcctgc attacgtggt acttatggtc
      121 ttattatttt caacttattc agtgtgccag aatgtagagt gtgcagattc aaaaataaaa
      181 ggatggtgaa tatagggaat taggaattaa caaatattga ccttcttccg gaaatgaagg
      241 gcaatccaac cattgcgcct caaagtgcgt aaatggttca ttcccacaga tgttgccatc
      301 tgcagcaatt ccggttcgtc cgcctccagc aagccactga gcagccaggt accaccggcc
      361 tttgtagcgg cagccattga ggcaccatgc tgcaacaaaa tgtgcttatt gatattagcc
      421 aggatcacgt caaatggttt gccaggcgga attgcatcag ccagttcaag ctccacaagt
      481 ctgcaaccat tatctgccag gttctccttt gcattcttta tactccactc gtcgttgtct
      541 attgccaata caccggaagc gcccaagcgc tcagccaata ttgccaatac gccggttccg
      601 gtcccgaaat ccaaaacgga tcggccctcg aaaccgattg tggacatctc cttcatcatc
      661 agccaggtgg tggcatgatg accggtaccg aaactcattt taggagtgat cacgatttca
      721 tgccgcactg tggaaagagg cttgtgaaag gatgccctca cgcctgcaaa atcatccacc
      781 aataccggtt caaatgaaga ctcccactgg gcattccagt tttcattcct gacctctgta
      841 aactggtatg ttaatgtgaa ggattttaac aaatcgacca cttcttccac caaaacctgc
      901 ctgctcaacc cgcttgctac cagtttatct tcctgctctt caaaggcatc aatgccaagc
      961 aaactcaatt ctgccaccaa tacatcacgg atatcggcat tggtaacatc aatggtaaac
     1021 tgggcgtata cttcctggat ttgcatggcc ttcaattagg ttcaatgaaa aagctgtttt
     1081 ctacatggca cactgggtgc gtgcccaagc agaaaacagc tttcctgatt tttaatcatt
     1141 actggttctc gctactgcct tcctgcttca tttcaggttt gggcaaaagc actttgcgac
     1201 tcaacttgaa tttgccggtc ttgggatcgg taccggtgag tttcaccttc acctggtcgc
     1261 cttctttcag aatgccttcc aaagtttcga gacgcttcca ggtcacttcg ctgatgtgca
     1321 gcaatccttg cttgccagga aggaactcaa cgaatgcacc gtaaggcatg atgctcttca
     1381 cagtggcatc atatacatcg cctacagtag gcacggctac aatacccttc acccaccttt
     1441 cagcgttgtc aacaccttct ttattggtac caaagatgct tacctcaccc atattgttct
     1501 tctcctcgat ggtgatggta gtaccagtca ccttctggat ttcctgcacc actttaccct
     1561 gtggtccaat aacggcgcca atgaattcct tgtcgatgaa catcttcacc attcttggag
     1621 aatgtggctt cacttcctca cgggcagaag gcatggcagc gtacatcgca tccagaatgt
     1681 ggagacgacc ctggcgggct tgtgccagcg cttcacgcat tacatccatg ctcaggccgt
     1741 caatcttaat atccatttgc acaccgcaaa taccatcgcg ggtaccggtt actttaaagt
     1801 ccatatcacc caggtggtct tcgtcaccga ggatatcggt caaaatagca tacttgccat
     1861 cagacgacct cgtgatcaat cccatggcca cgccacttac gtgcttggat acagggatac
     1921 cagcatccat cagggccagt gagccggcac aaaccgtggc cattgagctt gaaccgtttg
     1981 attcaaggat atcacttact acacgtacag tgtaaggata ttcattacca ggcatcattt
     2041 gcttcaggct acgcatagcc aggttgccat ggcctacttc gcgacggccg ggaccacgca
     2101 tcggcttcac ttcgccagtg ctgaatggag ggaagttgta atggagaata aacttggtat
     2161 aatcactggt ggcagcactt tcaatcaaca actcatcaag tggggttccc agtgttacag
     2221 tagtcaacga ttgtgtttcg ccacgtgtaa ataacgcaca gccatgagga gaaggcagaa
     2281 catctaccat catatccagt ggtcgaacgg tagtgaggtt gcggccatcg aggcggatac
     2341 gatcgtcgag gatcatatcg cgaaccacat gatactgcag ttctcccagg taatgaccaa
     2401 ccaaaggtgc atcttcatcg ctcagttcgc cgagggctgc ttctacttct tcaaaaagct
     2461 tgctgaaagc atcgctccgc tcatgcttag ctgaagcact tttggcaatg gcatacatct
     2521 tgtccttggc caggtctttg atcttctgct cgagttcggc attgcggtaa ggcttgctga
     2581 agtcacgctt atcggttacg cccactttgc tgcgcagttc ttcctgggct gcaatttgaa
     2641 ggcggacagc attgtgagcc acttccagcg ccttcaccag gtcttcttcc tggcattctt
     2701 tggcttcacc ttccaccatc ataatattct tagaggtagc ggcaatgatg aagtccatat
     2761 cgcagtcctt catttggcta cgggtgggat tcaccacgta ctcgccattc aaacgaccaa
     2821 tgcgtacttc ggaaatgatc tcctggatgg gcacatcaga aacggccagt gcggcagatg
     2881 ctgccaggca ggacaatgca tcaggcatta cttcaggatc gctggaaata agggtaacca
     2941 gcacctgcac atcgcacaga taatcttcag ggaataaagg gcgcaatgct cgatcgatca
     3001 ggcggctgat caatacttca taatcactca ggcgtccttc acgcttaaaa aatgaacccg
     3061 ggatacggcc tgcagaggca aatttttcct ggtaatctac agtgagagga aagaatgatt
     3121 ggccagggcg gggttctttg ctggcgcaaa ctgtggccag caggtaagcg tttccgcact
     3181 gtacaagagc tgcaccatca gcctggcgag ccaggcggcc agtgcttatg gtaatgggct
     3241 tgtcattgcc cgtgttaatg acaactgaat ggggttgagt caacataaaa tccaagattt
     3301 gatagagtga ataaatggca agaacggaca cacctgtccg gcaggtaagc agaaacaatt
     3361 gctggcaaaa tatgaaaacc ccaatcagca gcgctaattg gggattatat cgttatgcca
     3421 gcctcatttt acttcctgag acccagtttt tcgatgagtt cgcgatagcc ttgcagattg
     3481 tgcttgctga ggtaggtaag caggcgctta cgctgaccaa ccagcttcat caggccgcgg
     3541 tgggtgctga aatccttctt gttttgctgc aggtgagcag aaagtgcaga aatacgctca
     3601 gtcagcagtg cgatctgacc ttcgatggaa ccagtgtttt tggcgttgcc accataagtt
     3661 tcgaaaatct tggctttctt ttcaacggtt aaataaggca tccgattttg ctttttgtgt
     3721 tatccgatta ttacatccaa ttaaatgggc ggcaaaagta gggcaaaact ctaaaattaa
     3781 aaatattggg gaaaggaatt tagtttgcgc tttgttaact accctttgcc aatgcctgct
     3841 ccccatatcg ttttcactgt caccaacgac ctcaattacg accagcgaat gcaacgcatc
     3901 tgtacttcgc tggctgaagc cgggtacgag gtaaccctgg tggggcaaga atcgtcagat
     3961 tcaaaaccta ttgaaaacca attatttaaa caggaaaggc tcccaattcg acaccaaaag
     4021 ggcaagctgt tttactggga gtacaaccgg aaactgtata aatggctgga ggcactggcc
     4081 aaaagaagtt ccgggcaacc actggccctt tgcgccatag acctcgacac gatcattccc
     4141 tgctacctcg tatccaaaaa attcaacctg cccagggttt acgatgccca tgaactcttt
     4201 acagaactta ccgaagtgaa aaggcggccc tggatccacg cagcctggaa atgggttgaa
     4261 aggagaatgg
//
LOCUS       DATIQF010000395         4473 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_204308,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000395 DATIQF010000000
VERSION     DATIQF010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4473)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4473)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4473
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204308"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(115..723)
                     /locus_tag="VLL95_06535"
     CDS             complement(115..723)
                     /locus_tag="VLL95_06535"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HSR38555.1"
                     /translation="MAKHVYSYLALGDSYTIGEGVPLFESFPYQVVQQLRKQHISMHA
                     PEIVAKTGWTTFELADYLINHSFNEHYDFVTLLIGVNNQYRGLSVSDYAEEFEFLLRK
                     AIHFAGGNAGKVCVLSIPDWGCTPFAHGKHPEKIAPAIDSFNNAAEALCLKYSVHFQD
                     ITAFSRQTGKDTEMLAADGLHYSGKAYSEWATGVASWMRKQA"
     gene            complement(818..2086)
                     /gene="kynU"
                     /locus_tag="VLL95_06540"
     CDS             complement(818..2086)
                     /gene="kynU"
                     /locus_tag="VLL95_06540"
                     /EC_number="3.7.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030429 - kynureninase activity [Evidence
                     IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="kynureninase"
                     /protein_id="HSR38556.1"
                     /translation="MSSTSYEATLAYARTMDANDPLGGYRDLFYFPNHNGRDAIYFCG
                     NSLGLQPKTVADAIDTELKTWQELVVGGYFGGTNPWLYYQDYCKPALARLVGASVHEV
                     TVMNALTVNLHLMMLSFYKPTASRFKIMMEAGAFPSDQYAVETQVKHYGFDPADAIIE
                     IAPRPGEKLLRTEDILNAIEDHGPSLALTMFSGMNYYTGQLYNMPAIVKASHAAGAFA
                     GFDLAHVSGNVPVHLHDWDADFAVWCSYKYLNGGPGAVGGVFVHERHAANVKLGRLGG
                     WWGNDEKTRFKMEKGFEPKPDASGWCLSTSQVFNTVCLKASLEIFEQAGIDKLREKSI
                     RLTGYLEYLLNQLPNLSFEIITPANPGERGAQLSLYFNQQGREIHDKMIESGIIVDYR
                     EPGVIRVAPAPLYCSFEDVFRFYEILKNNF"
     gene            2275..2937
                     /gene="msrA"
                     /locus_tag="VLL95_06545"
     CDS             2275..2937
                     /gene="msrA"
                     /locus_tag="VLL95_06545"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR00401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HSR38557.1"
                     /translation="MMHVVLSGLVMGAVAMSACNQPNVQSQSLQANVINKRMNTDTAT
                     FGSGCFWCTEAIFQELKGVLKVTSGYSGGHVANPTYDQVCSKTTGHAEVTQIVYNPEQ
                     ITFDELLEVFWQTHDPTTLNRQGADEGPQYRSAIFYHSAEQKEKAERYKKDLDASGAF
                     SAPIVTEISAFKNFYPAEDYHQNFYANNPNYGYCSYVIRPKLDKFQKVFKDKLRRNNP
                     GQ"
     gene            2997..>4473
                     /locus_tag="VLL95_06550"
     CDS             2997..>4473
                     /locus_tag="VLL95_06550"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HSR38558.1"
                     /translation="MTTIIRSGIFLLALLPAALTAQPLSRKTGFTKSDTLRGTLNANR
                     TWWNVLRYDVEVTPDFGSETIAGRTSIRYAGNGHKTMQIDLQQPLVIDSIMHEGEKVR
                     FTREDNIALLYFAADQSNNEENSVVIYYHGKPRKAVRPPWDGGWIWTRDAKGRPWMSV
                     ACQGLGASVWYPCKDHQSDEPENGASLTIVAPDSLSAVGNGRLISKISKNGKTAWRWE
                     VRNPINSYNIIPYIGKYENFNEAYEGEDGKLDCSYWVLDYELEKAKAQFVQVKSMLQC
                     FESWFGPYPFYEDGYKLVQSPHLGMEHQSAVAYGNRFLNGYLGRDLSGTGWGSKWDFI
                     IIHESGHEWYGNSITTKDIADMWVHEGFTNYSETIYTQCQSGLAASQEYVQGIRKNIQ
                     NDKPIIGIYGVNEEGSGDMYYKGANLIHTIRTIMQNDSLFRQMLRTMNRKFYHHTVTT
                     KQIEDFIQSFCTFDCKPIFDQYLREVNVPRLQWRLQQGNLQV"
BASE COUNT         1201 a         1148 c         1073 g         1051 t
ORIGIN      
        1 gcgatcatag atcctgccga cacccgcatg gtaattgcgg agggcataaa agcagccaat
       61 cacaatccga atatggagcc tttcaggacc ggcgtattcc aggtgtaaaa agcatcaggc
      121 ttgcttcctc atccatgacg ctacgccggt agcccattcg ctgtatgctt tgccggaata
      181 atgcaagcca tctgctgcca gcatttccgt gtcttttcct gtttgccggc taaaggcagt
      241 tatgtcttga aaatgcacac tgtatttaag acacaatgct tcggccgcgt tgttgaagga
      301 atctatggca ggggcaattt tctcgggatg cttgccatgt gcaaatggag tgcatcccca
      361 gtcggggatg gacagcacac atactttgcc ggcattgcca cccgcaaaat gaatggcctt
      421 acggagcagg aattcaaatt cctcggcata atcacttact gacagccccc ggtattgatt
      481 gttgacacca atgagcaagg tgacaaagtc gtaatgctca ttgaaggagt gattaatgag
      541 ataatcagcc agctcaaagg ttgtccagcc tgttttggcc actatttcag gggcatgcat
      601 gctgatgtgc tgcttgcgca attgttgcac tacctggtaa ggaaagctct caaaaagggg
      661 tacgccttcc ccgatggtat aactatcgcc aagtgccagg tagctgtata catgctttgc
      721 cataaaaagg aatttactgg tagtttaaaa acaacagacc tgatttgaaa acagcttatg
      781 acaggttctg aactcactca gttccacagc gcgccagtca aaagttgttt tttaagattt
      841 catagaacct gaatacatct tcaaagctac aatataaagg ggcaggcgcc acccttatta
      901 cgccgggctc acggtaatcc acaatgatac ccgattcaat catcttgtca tgtatttcgc
      961 gaccctgctg attgaaatag agcgacagtt gagcccctct ttcacccgga ttcgcaggcg
     1021 taatgatctc aaatgaaagg ttgggcaact ggttcaataa atattcaaga tagccggtca
     1081 accggatgct cttttcacgc agtttgtcta taccagcctg ttcaaatatt tccagcgagg
     1141 ctttcaggca aacggtattg aacacctggg aagtgctcag gcaccagcca ctggcatctg
     1201 gctttggttc aaagcccttt tccatcttga accttgtttt ctcatcattg ccccaccagc
     1261 caccgagccg gcccagtttt acattggcag catgacgttc gtgtacaaat accccgccta
     1321 ctgcaccggg cccgccgttc aggtatttgt aactgcacca aacagcaaag tcggcatccc
     1381 agtcgtgcaa atgaacgggc acattccctg atacatgggc caggtcgaag ccggcaaaag
     1441 cgcctgctgc atgcgaagcc ttcacaatgg caggcatgtt gtacagttgc cctgtgtagt
     1501 agttcatccc actgaacatg gtcaatgcaa gcgagggacc atgatcctca atggcgttga
     1561 gtatatcttc tgttctaagc aatttctctc ccggtcgggg tgctatttca ataatggcat
     1621 ccgcaggatc aaaaccgtag tgttttacct gggtttccac ggcatattgg tcgctgggaa
     1681 aggcgccggc ctccatcatg atcttgaaac gagatgctgt tggtttataa aagctcagca
     1741 tcatcaaatg aagatttact gtcagcgcat tcatcaccgt cacctcgtga acggatgcgc
     1801 caaccagtct ggccaatgcg ggcttgcagt aatcctggta atacagccag gggttggttc
     1861 cgccaaaata gccacccacc accaattcct gccaggtttt caactcggta tcaatggcat
     1921 cagccaccgt tttgggctgc aacccaaggc tgttgccgca gaaataaatg gcatccctgc
     1981 cattatgatt ggggaaataa aacaagtcgc gatagccgcc cagtggatca ttggcatcca
     2041 tggtacgggc ataggcaagc gtggcctcgt aggaagtact gctcatggtc aatcgttgaa
     2101 cgttgtgcag gcaaggatag acaaaccatg gcaattattg aagttttaag aatcctttta
     2161 cattcagcaa agcctccaaa aatggtcaaa ctatacttag tgttaatttg gcaatcctta
     2221 tcactgccac acctttaata agtccaattt tgtgtttcta aaaagacgga aagaatgatg
     2281 catgttgttt tgagcgggtt ggtaatgggg gccgttgcca tgagtgcatg taaccaaccg
     2341 aatgtgcaat cacaatcttt gcaggcaaac gtgatcaata agcgtatgaa tactgatacc
     2401 gccacttttg gctccggctg cttttggtgt actgaagcca ttttccagga attgaagggc
     2461 gttttgaaag tgaccagcgg ttacagtggc gggcatgttg ccaatcctac ctatgaccag
     2521 gtgtgcagca aaaccaccgg gcatgcggaa gtaacccaaa tcgtgtacaa ccccgagcag
     2581 atcacgtttg atgaactgct ggaagtgttt tggcaaacgc atgatcccac caccctcaac
     2641 cggcagggcg ccgatgaggg tccgcaatac cgcagcgcca tcttctatca ctccgctgaa
     2701 caaaaagaaa aagccgaacg ctacaaaaaa gacctcgacg ctagtggcgc tttcagtgcc
     2761 cccattgtta cagagatctc tgccttcaag aacttctacc cggctgaaga ctatcatcaa
     2821 aacttctacg ccaacaaccc caactacggc tattgcagct atgtgatccg gccgaagctt
     2881 gataagttcc aaaaagtatt caaggataaa ctccgcagaa acaatccggg ccaataaccc
     2941 ggatttttta tggtcattgc tgcaggaatg ataattttcc agcatcaaac aaaagcatga
     3001 ccaccataat tcgctctggt atatttcttc ttgcgctgct gcctgctgca ttgacagcgc
     3061 agccgctcag caggaaaaca ggattcacaa agtccgacac gttgcgtggc accctgaatg
     3121 ccaaccgcac ctggtggaat gtgctgcgat acgatgtgga agtaacgcct gatttcggat
     3181 cggaaaccat tgccggccgc accagcattc gctacgccgg caatggacac aaaaccatgc
     3241 agatcgacct gcagcagcct ttggtcattg acagcatcat gcatgaaggc gagaaagtac
     3301 gcttcacccg cgaagacaat attgcattgc tgtatttcgc tgccgaccaa tcgaacaacg
     3361 aagagaacag cgtggtgatc tattaccatg gcaaaccccg caaggcagtg cgccccccct
     3421 gggatggcgg ctggatttgg acccgcgatg ccaaaggccg cccctggatg agtgtggcct
     3481 gccagggatt gggcgcatcg gtttggtatc cttgcaagga ccaccaaagc gacgaaccgg
     3541 aaaacggtgc ctcccttacc attgttgccc ccgattccct gtcagccgta ggcaacgggc
     3601 ggctcatcag caaaatcagc aagaatggga aaacggcctg gcgctgggaa gtgcgcaacc
     3661 ccatcaactc ctacaacatt ataccctaca tcggcaaata cgaaaacttt aatgaagctt
     3721 atgaaggcga agatggcaaa ctcgattgca gctactgggt gctggattat gaactcgaga
     3781 aagccaaagc ccagtttgta caggtaaaaa gcatgttgca atgcttcgaa tcctggtttg
     3841 gcccctaccc tttttatgaa gatgggtaca aactggtaca atcgccgcac ctgggcatgg
     3901 agcaccaaag tgcggtggcg tatggcaacc gatttttaaa tggatacctc ggtcgcgacc
     3961 tgagtggtac cggttgggga agcaaatggg attttatcat catccatgaa agcggccatg
     4021 agtggtatgg caacagcatc accaccaaag acattgccga catgtgggta cacgaaggct
     4081 ttaccaacta cagcgaaacc atttacaccc agtgccagtc gggcctggca gcttcccagg
     4141 aatatgtaca gggcattcga aaaaacatac agaacgacaa gcccatcatt ggcatttacg
     4201 gggtgaatga agaaggcagc ggcgacatgt attacaaggg tgccaacctg attcatacca
     4261 tccggaccat catgcagaac gacagcctgt tccggcaaat gctgcgtacc atgaaccgga
     4321 agttctatca ccatactgtc accaccaagc agatcgagga tttcatccag tcattttgca
     4381 ctttcgattg caaacccatt ttcgaccagt atttgcggga agtgaatgtg ccgcggttgc
     4441 agtggcgatt gcagcagggc aacctgcagg tgc
//
LOCUS       DATIQF010000396         2921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_128183,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000396 DATIQF010000000
VERSION     DATIQF010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2921
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128183"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..228)
                     /locus_tag="VLL95_06555"
     CDS             complement(<1..228)
                     /locus_tag="VLL95_06555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38559.1"
                     /translation="MNKKNLSPESLMMSYGYKPELSQGSIKCPVFQTSTFVFENAEAG
                     KAFFEVAYGLRAQKENEELGLIYSRINNPDLE"
     gene            389..901
                     /locus_tag="VLL95_06560"
     CDS             389..901
                     /locus_tag="VLL95_06560"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HSR38560.1"
                     /translation="MSLDQTDRRILQLLQYDARLTNKEIADKLGKTISPVYERIKWLE
                     QQGYIKQYIALADRNLLGLHLVAFTNVQLKEHAQTMLHAFEKEVVKLPEVLECYHMTG
                     MYDYLLKVVVSDMNHYQSFIVNKLAKLPNIGTVQSSFIMTEVKYQLAYPVTVEEDNKK
                     PLRKSKRGER"
     gene            complement(1023..>2921)
                     /locus_tag="VLL95_06565"
     CDS             complement(1023..>2921)
                     /locus_tag="VLL95_06565"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RecQ family ATP-dependent DNA helicase"
                     /protein_id="HSR38561.1"
                     /translation="EVKDDLTSGKTKMLYVAPETLTKQDNLDFFRDLNISFFAVDEAH
                     RISEWGHDFRPEYRRLRDMMDEINADIPVIALTATATPKVQSDIVKNLGLRDPNIFIS
                     SFNRKNLYYEVQPKVKKDQTIRNIVKFISQNRGKSGIIYTLNRKTTEELAELLMANNI
                     KAVAYHAGLDAKIRAERQDKFLNEEVQVIVATIAFGMGIDKPDIRFVIHFNIPKSIEN
                     YYQETGRAGRDGLEGKCILYYSHSDVAKLEHLMRDKPLSEREVGAQLINETVAFAESN
                     VCRRKILLHYFGEEWPKENCGLCDNCLHPKETIETKDEVVKVMKVVKALGEHFNIDYT
                     INILSGNPIPQVAMFRHNNIPEFGIGKDKDSHFWNSLIRQLLLEGLLRKDIEEYGLLK
                     FTDKGKAYFKKPTSFRIVLNNQFEDANEDDGDYDADGGGTGAAADERLFEMLKDLRQK
                     EAKKRSLPPFVIFLENSLQDMATMYPTSLEELERMQGVSKGKAIKFGRPFIELIAKYV
                     EDNDITKPDDFVMKSVVNKSSNKVYIIQNIDKKIPLDTIAKNKGLRLDELLEEMETIA
                     ASGTRLNLDYAIGEMLDEYEQEEVIEYFKGCETSSLDVAQKELSDLSLNWEQLKIMRI
                     KFLSVYGN"
BASE COUNT          650 a          749 c          718 g          804 t
ORIGIN      
        1 ctccaggtcg gggttgttga tgcggctgta gatcagcccc agttcttcgt tttctttttg
       61 tgcccgcagg ccataggcca cttcaaaaaa tgccttgcct gcttcggcat tttcaaacac
      121 aaaggtgctc gtttgaaaaa cggggcactt gatggaaccc tggctcagct cgggtttgta
      181 gccatagctc atcataaggc tttccgggga gaggttcttc ttgttcatag ccagcaattt
      241 taccttacaa aggtccacat atgaagcaat ttataccacc acttatgtca tattcataaa
      301 ataaattgtc tttaattcgt tatttccatc atttttgcca atctcaacct aaagtcattc
      361 atttttcagc aaaaattgct ccccgcctat gtcactcgat caaaccgacc gccggatttt
      421 gcagctgctg caatacgatg cccggcttac caacaaggaa atagccgaca aactgggcaa
      481 gaccatttcg ccggtgtacg aacgcatcaa gtggctggag caacaggggt atatcaaaca
      541 atacattgcc ctggccgacc gcaacctgct gggcctgcac ctggtggcgt ttactaatgt
      601 gcaactgaaa gaacatgcgc aaaccatgct gcacgctttt gaaaaagagg tggtgaaact
      661 gccggaagtg ctggagtgct atcacatgac gggcatgtac gattacctgc tgaaagtagt
      721 ggtgagcgac atgaatcatt accagtcgtt cattgtaaac aaactggcca agctgcccaa
      781 tatcggcacg gtgcaaagca gcttcatcat gaccgaagtg aaataccagc tggcctaccc
      841 ggtgacggtg gaggaggaca ataaaaaacc gctccgaaaa tcgaagcggg gagagaggta
      901 atgaggcaat taggcaatgg gtcaatcagt caatgagtga aaagggtaat cactttttct
      961 aaactcattc accattcaaa actcactatt ccctccttca ccccattcac tcattcactt
     1021 cctcagtttc catacacact caaaaacttg atgcgcatga tcttcagctg ttcccagttg
     1081 aggctcaggt cgctcagttc tttttgggct acatccagtg aggaggtttc gcagcctttg
     1141 aagtattcaa tcacttcttc ctgctcgtat tcatccagca tttcgccaat ggcatagtcg
     1201 aggttgaggc gggtgccgct ggccgcgatg gtttccattt cttccagcag ttcatccagc
     1261 cgcagtcctt tgtttttggc aatggtatcg agcggtattt tcttatcgat attctggatg
     1321 atgtacactt tgttgctgct cttgttcacc acactcttca tcacaaaatc atcgggctta
     1381 gtgatgtcgt tgtcttctac atacttcgcg atgagctcaa taaaaggacg accgaacttg
     1441 atggcctttc ctttgctcac gccctgcatg cgttccagtt cttccaggct ggtggggtac
     1501 atggtagcca tgtcctgcag gctgttttcg aggaagatga caaacggcgg caggctgcgc
     1561 ttcttggctt ctttctggcg caggtctttc agcatttcaa acaggcgttc gtcggcagca
     1621 gcacccgtgc caccaccatc ggcatcataa tcgccatcgt cttcattggc atcttcaaac
     1681 tggttgttga gcacaatgcg gaacgaagtg ggctttttga aataagcctt gcccttgtcg
     1741 gtaaacttga gcagcccgta ttcttcaatg tctttgcgca gcagtccttc cagcaacaac
     1801 tggcggatga ggctgttcca gaaatgcgaa tccttgtctt tgccgatgcc aaactccggg
     1861 atgttgttgt gccggaacat ggccacctgc ggaataggat tgccactcag gatattgatg
     1921 gtgtagtcga tgttgaaatg ttcgcccaac gccttcacca ctttcatcac ctttaccact
     1981 tcgtccttgg tttcgatggt ttctttcgga tgcaggcagt tgtcgcacag gccgcagttt
     2041 tccttgggcc attcttcgcc aaagtagtgc aacagtattt tgcggcggca cacattgctt
     2101 tcggcaaaag ccacggtctc gttgatgagc tgggcgccca cttcccgttc gctcagcggc
     2161 ttgtcacgca tcaggtgttc cagcttggcc acgtcgctgt gcgagtagta caatatgcat
     2221 ttgccttcca gtccatcgcg gccggcacga ccggtttcct ggtagtagtt ctctatcgat
     2281 ttgggaatgt tgaagtgaat gacaaaacgg atatccggct tgtcgatgcc cattccaaag
     2341 gcaatggtgg ctacgatcac ctgcacttct tcgttcaaaa atttgtcctg gcgctctgcc
     2401 cggatcttgg catccaggcc ggcgtggtag gccaccgctt tgatgttgtt ggccatcagc
     2461 aattcggcca gttcttcggt ggtcttgcgg ttcagcgtgt agatgatgcc gctcttgcca
     2521 cggttttgcg aaatgaactt gacgatgttg cgaatggtct ggtccttctt caccttgggc
     2581 tgcacttcgt agtacaggtt cttccggttg aaggaagaga tgaagatgtt cggatcgcga
     2641 aggccgaggt ttttcacgat atcgctctgt accttgggcg tggcggtagc cgtgagggca
     2701 atcaccggga tgtccgcatt gatttcatcc atcatgtcac gcagccggcg gtattccggg
     2761 cggaagtcgt ggccccattc cgaaatacgg tgcgcttcat ccactgcgaa gaatgagata
     2821 ttgagatcac ggaaaaagtc aaggttgtcc tgcttggtca gcgtttcggg cgccacgtac
     2881 agcattttgg ttttgccgct ggtcaggtca tccttcactt c
//
LOCUS       DATIQF010000397         2480 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_158544,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000397 DATIQF010000000
VERSION     DATIQF010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158544"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1114)
                     /locus_tag="VLL95_06570"
     CDS             complement(<1..1114)
                     /locus_tag="VLL95_06570"
                     /inference="COORDINATES: protein motif:HMM:NF023853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase III"
                     /protein_id="HSR38562.1"
                     /translation="MESLRFKALNGLLNYPTEVAVPPSPKVTTIFGENVFTLATARQF
                     LSDEAYKSLVASISNAKKIDRGMGNQIALGMRAWAESKGVTHFTHWFQPLTGTTAEKH
                     DSFFTLKGDGTPIEQFEGDALIQQEPDASSFPSGGLRATFEARGYTAWDPSSPAFIIE
                     IGHGKTLCIPTIFVSYTGESLDSKTPLLRSLDALNHAAVNVCHYFDRNVEHVKATLGW
                     EQEYFIIDAGFANSRPDIILTGRTVFGHSSAKGQQLEDHYFGSIPERVYAFMRDFEND
                     SYKLGIPLRTRHNEVAPGQFECAPIFEEANLAVDHNILLMDVMTRLAKRHNLKVLLHE
                     KPFAGINGSGKHNNWSMSTDTGENLLEPGKTPHANAQ"
     gene            complement(1249..2262)
                     /locus_tag="VLL95_06575"
     CDS             complement(1249..2262)
                     /locus_tag="VLL95_06575"
                     /inference="COORDINATES: protein motif:HMM:NF012348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase beta-grasp
                     domain-containing protein"
                     /protein_id="HSR38563.1"
                     /translation="MSAAKLEYIWLDGYKPTQSLRSKTKIEKDFSGKLEDCSMWSFDG
                     SSTEQAPGGSSDCLLKPVFICPDPQRKNAYLVMCEVLNADGTPHETNGRAHIDDDDND
                     FWFGFEQEYFLWDPSTSKPLGFPANGYPRPQGPYYCSVGAYNAFGRDIVEEHLDACLE
                     AGLNVEGINAEVAAGQWEFQIFAKGAKEAGDQIWIGRYLLERIGEKYGVAINWHCKPL
                     GALDWNGSGMHANFSNTLLRTAGSEEIFKKVCEAFRPVVKEHIAVYGADNHLRLTGKH
                     ETASIHDFSYGVSDRGASIRIPVNVPRWGWKGYLEDRRPNSAADPYKVAARIIKTVKA
                     VTA"
     gene            complement(2268..>2480)
                     /locus_tag="VLL95_06580"
     CDS             complement(2268..>2480)
                     /locus_tag="VLL95_06580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38564.1"
                     /translation="SNWLLTISQEEAVPEFILDFKICKIFFQITGLLGAILLDYFEKC
                     RVWQLEITLFAILATSYSPSSTKKQF"
BASE COUNT          595 a          607 c          665 g          613 t
ORIGIN      
        1 attgtgcgtt ggcatgcggg gtcttgccgg gctcgaggag attctctccc gtgtccgtag
       61 acatcgacca attgttgtgc ttgccgctgc cattgatgcc ggcaaaaggc ttttcgtgca
      121 gcagcacttt caggttgtga cgcttcgcaa ggcgtgtcat cacgtccatc agcaagatgt
      181 tgtgatccac ggcgaggtta gcctcttcaa agatgggtgc acattcaaac tggcccggtg
      241 ccacttcgtt gtgacgggtg cgcagaggga tgcccagttt gtacgagtca ttttcgaaat
      301 cacgcatgaa ggcgtatacc cgttcaggaa tggagccgaa ataatgatct tccagctgct
      361 gtcctttagc ggaggaatgg ccgaagacag tgcgaccagt aaggatgatg tcaggacggc
      421 tgttggcgaa acccgcatca ataatgaagt attcctgctc ccagcccagc gtggctttta
      481 catgctccac attgcggtcg aagtaatggc atacgttgac cgcggcgtgg ttcaatgcat
      541 ccagcgaacg aagcaacggc gttttggagt cgaggctttc gccagtatag cttacaaaaa
      601 tggtagggat acacagggtc ttgccatggc caatttcaat aatgaacgcc ggggatgatg
      661 gatcccaggc cgtgtaacca cgggcttcaa aggttgcccg caatccacca ctgggaaagg
      721 aagaggcgtc aggttcctgt tgtatcaggg catcgccttc aaactgctca atgggagtgc
      781 catcaccttt cagcgtaaaa aatgagtcat gcttttcggc agtagtgccg gtgagcggct
      841 ggaaccagtg cgtaaagtgg gtaacgcctt tgctttcggc ccaggcccgc atgcccaaag
      901 caatctggtt gcccatgcca cgatctattt tcttggcatt gctgatgctg gccaccaggc
      961 tcttgtaggc ttcgtcgctc aaaaactggc gggctgtagc cagtgtaaaa acattttcac
     1021 caaatatggt cgtcacctta ggggatggcg gtacggcaac ctctgtagga taattcaaca
     1081 aaccgttcaa cgccttaaat cgcaaagatt ccatgtgcag aattttaaag tcgaataatg
     1141 atcaaaagaa acgaattccg ggcaaatgtg cgaagatgag aaagccaacc ccctttcggg
     1201 tggttggctt ctgctattgc ttgctgttag tttcggttga gctagtcctt atgcggtaac
     1261 ggccttcaca gttttgatga tgcgggcagc tactttgtaa ggatcggctg cagagttcgg
     1321 acggcgatct tcgaggtaac ctttccaacc ccagcgtggt acgtttacgg ggatacggat
     1381 agaagcaccg cggtcgctta caccatagct gaagtcgtgg atgctggccg tttcatgctt
     1441 accagtaaga cggaggtggt tgtcggcgcc atatacagca atgtgctctt tcactacagg
     1501 gcggaaagct tcgcacactt tcttgaagat ctcttcgctg ccggcagtac gcaacaaggt
     1561 attgctgaag ttggcgtgca taccgctgcc attccagtcg agtgcaccca gcggcttaca
     1621 atgccagttg atagctacac catatttctc accgatgcgc tccagcaggt agcggccaat
     1681 ccagatctgg tcgccggctt ctttggcacc tttggcgaaa atctggaact cccactgacc
     1741 ggcggcaact tcggcgttga tgccttctac attcaggccg gcttccaggc aggcatccag
     1801 gtgctcttcc acgatgtcgc ggccgaaagc gttgtaagcg cctactgaac aatagtaagg
     1861 accctgcgga cgggggtagc cattggcggg gaagccgagc ggcttgctgg tggaaggatc
     1921 ccacaggaaa tactcctgct cgaaaccaaa ccagaaatca ttatcgtcat cgtcaatatg
     1981 ggcacgaccg ttggtctcgt gaggagtacc atcggcattg agcacttcgc acattaccag
     2041 gtaggcattc ttgcgctgag gatcagggca aatgaatacg ggcttcagca aacagtcgga
     2101 tgaaccaccg ggggcctgct ctgtagaaga accgtcgaaa ctccacatgg agcaatcttc
     2161 cagttttccg ctgaaatctt tttcaatctt ggttttgctg cgcaggctct gggtgggctt
     2221 gtagccgtcg agccagatgt actcaagctt agctgctgac atagttttta aaattgtttt
     2281 ttagttgatg aaggcgaata agaggttgca aggatagcaa aaagagtaat ttcaagttgc
     2341 catacccggc atttttcgaa ataatccaaa agaatcgccc caagtaaccc ggtaatttga
     2401 aaaaatattt tacatatttt aaagtctaat atgaattccg ggactgcttc ttcctgtgag
     2461 atggtcagca gccaatttga
//
LOCUS       DATIQF010000398         4342 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_128194,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000398 DATIQF010000000
VERSION     DATIQF010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4342
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128194"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..621
                     /gene="serC"
                     /locus_tag="VLL95_06585"
     CDS             <1..621
                     /gene="serC"
                     /locus_tag="VLL95_06585"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: protein motif:HMM:NF003764.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HSR38565.1"
                     /translation="EGTQQHVWPETNVPLVSDMSSDILSRQLDFNRFSLIYAGAQKNI
                     GAAGVNLVVVKRDLLGKVDRAIPSMLDYRQHIANNSMLNTPPVFAVYVCMLTLRWLKK
                     MGGIAAVEPVNQAKAALLYHALDRLPIFTPTVANEDRSLMNVVWVMQDPQLEAEFLAQ
                     CKAAGMVGIKGHRSVGGFRASLYNALPLSSVEVLVQLMEHFAAKHG"
     gene            707..1942
                     /locus_tag="VLL95_06590"
     CDS             707..1942
                     /locus_tag="VLL95_06590"
                     /inference="COORDINATES: protein motif:HMM:NF018004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1015 family protein"
                     /protein_id="HSR38566.1"
                     /translation="MAHIQPFKALRPDPQFASKVASRPYDVMSRSEAKDEARGNPNSY
                     LHITRSEINLPDAVDLYDEQVYQTAKDNLKAFISRNVLFKESKPCYYIYRLTMNGRSQ
                     TGLVCVSSVDDYNKGIIKKHEFTRPEKENDRIRHIVTTGAQTGNVFLAYRNVEAIDAC
                     IQDWQNSRSPIYDFTSEDGVKHEIWVVNADKAIETITRLFEEQVAATYIADGHHRAAS
                     ASKSQAMFKSEKARAKAEWFLTTLFPANQLYIMDYNRVITDLNGLSNEAFFAAIGEKF
                     DIENKGLKAYQPRQLHEFGMYFEGHWYKLTAKPGTYSEDPIGVLDVTILSDNILDPVL
                     GIKDQRTDKRIDFVGGIRGLDALKARVDSGDLKVAFALYPVSIEQLFNIADSGNVMPP
                     KSTWFEPKLRDGLLTHLVG"
     gene            complement(2036..2782)
                     /locus_tag="VLL95_06595"
     CDS             complement(2036..2782)
                     /locus_tag="VLL95_06595"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSR38567.1"
                     /translation="MKVSIITTSYNSGHTIKDTLMSVATQDYPDIEHLIIDGGSTDET
                     LEVVSRFSHNSLVVSEKDGGIFHAMNKGLRLCTGDVICFLNSDDWYHTNDVISKVVRN
                     LTYSNCKVVYGDLQYVKQYNPERIVRTWKSGQFRRKNLYYGWMPPHPAFFAKKEVYEE
                     VGFFNTDLNSAADYELMLRILLKHEHDACYIPEVLVKMRQGGYSNASFKNRLKANHED
                     HQAWVLNGLKPLIFTRYLKPIRKIPQFFLR"
     gene            complement(2806..>4342)
                     /locus_tag="VLL95_06600"
     CDS             complement(2806..>4342)
                     /locus_tag="VLL95_06600"
                     /inference="COORDINATES: protein motif:HMM:NF014589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carbamoyltransferase C-terminal
                     domain-containing protein"
                     /protein_id="HSR38568.1"
                     /translation="RDPKAKWLTKTTFMLQRPEAVGFAIRGRLSNAAGAASVEARLNE
                     LAAKSGQAPVSQKVRYVEHHRSHLASAFFASGMQEAALLSVDGSGDFTTTMMGIGRGN
                     NIEVLRSIDFPHSLGIFYTAFTQLLGFPYYGDEYKVMGLAPYGKPLYYEQLKQVVKWH
                     DNGTFSLNPEWFRPPEKSYIAYDRQHRPVVPPLFSATMEAAFGRCRQPHEELTQKHKD
                     LAASVQHMLEETIFHMLRHLHQQTGLTSLCMAGGVAQNSVVNGKITRNTPFKQVYIPA
                     AGHDAGLSVGAGLYVCHQQEGMPRTAGLNHAYTGSWFGNEAIEKLLESRHQTYRYIPD
                     DKELYQTVATCISNGGVVGWFRGRSEFGPRALGNRSILADPRRADAKDLLNLKIKRRE
                     SFRPFAPSVLEEYASDLFEYWEPAPFMEKVFTIKNEVRPSIPAVTHVDGSGRLQTVCR
                     KNSPDYYALIDTFRQITGVPVLLNTSFNENEPIVNTPDEALDCFERTAMDMLVIGNFV
                     LSR"
BASE COUNT         1086 a         1125 c         1106 g         1025 t
ORIGIN      
        1 gaaggcacgc agcagcatgt atggcctgaa accaatgtgc cgctggtgag cgacatgagc
       61 agcgacatcc tgagccggca gttggatttt aatcgattca gcctcatata cgccggcgcc
      121 caaaaaaata tcggcgccgc cggggtgaac ctggtggtgg taaaacgcga cctgctgggc
      181 aaagtggatc gggccattcc ctccatgctc gattaccggc agcacattgc caacaacagc
      241 atgctgaaca cgccaccggt ttttgcggtg tatgtgtgca tgctcaccct gcgctggctg
      301 aaaaaaatgg gcggcattgc agccgttgag cctgtcaacc aggccaaagc cgcactgttg
      361 taccatgcac tggatcgcct tcccatcttt acgccaacgg tggccaatga agaccgcagc
      421 ctgatgaacg tggtttgggt gatgcaggac ccgcaactgg aagccgaatt cctggcccag
      481 tgcaaggcgg cgggcatggt aggcatcaaa ggccaccgca gcgtaggtgg cttcagggct
      541 tcgctgtaca atgcccttcc cttgagcagt gtggaagtac tggtgcagct gatggagcac
      601 tttgctgcca aacacggtta agacccgcat cgccaaccag taggaacgaa acaattatat
      661 tgcgccccga aatattgtga ttcaggattt attgagtaac cccaccatgg cacacatcca
      721 acccttcaag gcactacgcc ccgaccctca gtttgcatcc aaagtagcca gcaggcccta
      781 tgatgtaatg agccggagcg aagccaagga cgaagcaaga ggaaatccaa atagctacct
      841 gcacattacc cgcagcgaga tcaacctgcc cgatgcagtt gatctgtacg acgagcaggt
      901 atatcaaacg gctaaagaca atctcaaggc tttcatcagc cgcaacgtgc tgttcaaaga
      961 gtcgaagccc tgctattata tctatcgcct taccatgaac ggccggtcac aaaccggcct
     1021 ggtttgtgtg tcatcggtag acgattacaa caagggcatc atcaagaagc acgaattcac
     1081 ccggcccgag aaggagaatg accgcatcag gcacatcgtt accaccggcg cccaaacagg
     1141 caatgttttc ttagcctatc gcaatgtgga agccattgat gcctgcatac aggattggca
     1201 aaacagccgt tcccccattt atgatttcac ttcggaagat ggtgtgaaac atgagatttg
     1261 ggtggtaaac gccgacaagg ctattgagac cattacccgt cttttcgaag aacaggtagc
     1321 ggccacctac attgccgatg gacaccaccg ggcagccagc gcctccaaga gccaggccat
     1381 gttcaaatcg gaaaaagcca gggcaaaagc cgagtggttt ctgaccacgc tgttcccggc
     1441 caaccaattg tacatcatgg attacaaccg ggtgatcact gatctcaacg ggttgagcaa
     1501 tgaagctttc tttgcggcca tcggcgaaaa gtttgatatc gagaacaaag gattaaaggc
     1561 ctaccagccc aggcagctcc atgagttcgg tatgtacttc gaaggacatt ggtacaaact
     1621 cactgccaag cccggcacct attctgaaga cccgataggt gtacttgatg tgaccatttt
     1681 gtctgataat attctcgatc ccgttctggg catcaaagac cagcggaccg acaagcgcat
     1741 tgattttgtg ggcggcatca gggggctgga tgctttaaaa gccagggtag acagcggcga
     1801 cctgaaagta gcttttgctt tgtacccggt gagcattgaa caactcttca atattgccga
     1861 cagcggaaat gtaatgcccc ccaagagcac ctggtttgag cccaaactga gagatggttt
     1921 gcttacccac ctggtgggat gatggttgcc agggagcttc agaaattcat tgataaaaaa
     1981 aaccggccca ttacatggag accggtttta ttatggcagc aatagcagtg aattgtcacc
     2041 gaagaaaaaa ctgtggaatc tttctgatcg gtttcaaata gcgggtaaat ataagtggtt
     2101 ttagtccatt caaaacccaa gcctggtgat cttcatggtt ggccttcaac ctgtttttga
     2161 atgacgcatt gctataaccg ccctgcctca tttttaccag tacttcaggt atatagcagg
     2221 catcgtgttc gtgtttcagc agtatgcgca acatcagttc gtaatcggca gcactgttca
     2281 aatccgtatt gaaaaatcct acctcttcat atacttcctt tttggcaaag aaggcaggat
     2341 gaggaggcat ccatccgtaa taaaggttct tacgcctgaa ctgtccgctc ttccaggttc
     2401 ttacaatgcg ttcaggattg tactgcttca cgtattgtaa atcgccatac accactttac
     2461 agttggaata ggtcaggttg cgtaccactt tggaaatgac atcattggta tggtaccaat
     2521 catcggagtt gaggaaacag attacatcac ccgtgcaaag gcgcagccct ttgttcatgg
     2581 catgaaaaat gcctccatct ttttcagaca ccaccagtga gttatggctg aaacgcgata
     2641 ccacctccag cgtttcatca gtagaaccgc cgtcaataat gaggtgctca atatcaggat
     2701 aatcctgagt tgcaacactc attagtgtgt cctttatggt gtgtccactg ttgtaagaag
     2761 tggtgatgat agataccttc atagggggtg gttagtatta atgggctacc ttgaaagtac
     2821 aaaatttcca ataacaagca tgtccattgc tgttctctca aaacaatcca acgcttcgtc
     2881 gggcgtattt acgatcggct cgttttcgtt gaatgaggta ttcaacagta ctggaacgcc
     2941 cgttatttgc cgaaaagtat ctataagggc ataataatca ggactatttt ttctacatac
     3001 tgtttgtaag cggccagagc cgtcgacatg ggtgacagcc gggatgctcg gccggacttc
     3061 gtttttgata gtaaatacct tttccataaa aggagccggt tcccaatact caaaaaggtc
     3121 ggaggcatat tcctccagca ccgagggggc aaatggccgg aaactctctc tccgcttgat
     3181 cttcaggttg agcaggtctt tggcatcggc ccggcgggga tcagccaata tcgagcggtt
     3241 gcccagggcc ctggggccaa attcgctcct gcctctgaac cagcctacca cccctccgtt
     3301 gctgatgcag gtggcgacgg tttgataaag ctccttatca tcaggaatgt accgataggt
     3361 ttgatgcctg ctttccagca gtttttcaat ggcctcgttc ccgaaccaac tgccggtata
     3421 ggcatggttc agccccgccg tccttggcat cccttcctgt tgatggcaca catacaaacc
     3481 cgccccaaca gacaagccgg catcgtgccc ggcagcgggt atgtacacct gtttgaatgg
     3541 cgtgttccgg gtaatttttc cattgaccac ggagttctgg gccacgccac ccgccatgca
     3601 aagcgaggtg aggccggttt gctggtgcag gtgccgcagc atgtggaaga tggtttcttc
     3661 cagcatgtgc tgtaccgaag cagccaggtc cttgtgtttt tgagtcaact cttcgtgcgg
     3721 ctgccggcat ctgccgaaag cagcttccat ggtggcagaa aacaatggcg gtaccaccgg
     3781 gcgatgctgc cggtcgtagg cgatataact tttctccggt ggccgaaacc attccgggtt
     3841 caggctgaaa gtgccattgt cgtgccattt caccacttgc ttcagttgct cgtaatacaa
     3901 gggcttgccg tagggggcca gccccatcac cttgtattca tccccgtaat aaggaaagcc
     3961 gagcaattgg gtaaaggcag tataaaaaat gccgagtgaa tgcgggaaat cgatggagcg
     4021 cagcacttcg atattgttgc cccgccctat gcccatcatg gtggtggtaa aatcgccgga
     4081 accatccacc gataacaaag cagcctcctg catacccgaa gcgaagaaag ccgaagcgag
     4141 gtggctgcga tggtgctcta cataccgcac cttttgtgat accggcgcct gtcctgattt
     4201 tgccgccaat tcgttgaggc gggcttctac agaggcagca ccggcggcat tgctcaaacg
     4261 gccgcggatg gcaaaaccca cggcctcggg ccgctgcagc atgaaggtgg ttttggtcag
     4321 ccatttggct ttgggatccc tg
//
LOCUS       DATIQF010000399         6622 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_36724, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000399 DATIQF010000000
VERSION     DATIQF010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6622
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36724"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..545)
                     /locus_tag="VLL95_06605"
     CDS             complement(<1..545)
                     /locus_tag="VLL95_06605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38569.1"
                     /translation="MAHGGQGLAQSALRSRDQDSAKGIWRVLQVIFWMVGAFIFMALL
                     FWPSLGVLLFWNVLIPVAPALLVISTGFWRNVCPLASTNLLPRHLGISKQQIMPRNLQ
                     AWLSLLAVVSLYTIVPLRHAVFNQSGLATAMLLAGCVAAGWLLGLFYDWKSGWCSSLC
                     PVHPVEKFYGTNPSFTFVNAH"
     gene            complement(625..993)
                     /locus_tag="VLL95_06610"
     CDS             complement(625..993)
                     /locus_tag="VLL95_06610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38570.1"
                     /translation="MEHTQKQCLSCGKPLKGRIDKKFCDDYCRTQYNNQLKAEDSAVI
                     KKINAILRQNRRLLERIIAPGEEMGKCPKQKLLDGGYNFQYMTHQYTNKKGNVYTFCY
                     EYGFLPLEGDWMLVVKRQQL"
     gene            1157..1495
                     /gene="ssb"
                     /locus_tag="VLL95_06615"
     CDS             1157..1495
                     /gene="ssb"
                     /locus_tag="VLL95_06615"
                     /inference="COORDINATES: protein motif:HMM:TIGR00621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HSR38571.1"
                     /translation="MNALKNRVQLIGNLGLDPEVKAMHSGKKMARIRMATNESYTNAH
                     GETITNTQWHNIVAWGRAAEIADKYLVKGLEVAVEGKLVNRSYTTEQGETRFCTEIQA
                     NNILILSHKK"
     gene            1530..1877
                     /gene="ssb"
                     /locus_tag="VLL95_06620"
     CDS             1530..1877
                     /gene="ssb"
                     /locus_tag="VLL95_06620"
                     /inference="COORDINATES: protein motif:HMM:TIGR00621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HSR38572.1"
                     /translation="MNSLKNRVQLIGHLGVDPEMKTIENGTKLARLRLATNETYTNAK
                     GEKVTETQWHNVVAWGKTAELAEKLLAKGAETAIEGKLVSRSYTDKDGQKKYVTEVVV
                     DEFLLLSRKSTAA"
     gene            1972..2700
                     /locus_tag="VLL95_06625"
     CDS             1972..2700
                     /locus_tag="VLL95_06625"
                     /inference="COORDINATES: protein motif:HMM:NF015962.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-phosphosulfolactate phosphatase"
                     /protein_id="HSR38573.1"
                     /translation="MSNNKPTLFTCLSPSLLHLYDVHDAIVVVIDVFRATSTVASALY
                     NGAERIIPVDSVQGAIELGNELGAITAGERDGKIAPGLQYGNSPLEYPRSFVEGKTLV
                     LTTTNGTRLLHMALRNGATEVITGAFANLSAVCDHLVASGKNVILGCAAWKDRVNMED
                     SLFAGAVVSRVREHFQIFCDASLAAETLYRHTQVDTWNFIRKTTHYHRLASYGLEKDM
                     QWCISLDVANVLPVYKDGALVVHS"
     gene            2719..3819
                     /gene="mnmH"
                     /locus_tag="VLL95_06630"
     CDS             2719..3819
                     /gene="mnmH"
                     /locus_tag="VLL95_06630"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF008750.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HSR38574.1"
                     /translation="MPITSLSISQYFTSYRHALLIDVRSPGEYNHAHIPGALSLPLFT
                     DEERKVVGTTYKQESREKAIKIGLKYFGPKMVRMIEQVEKWLKEKEGTRTDAAPQQPF
                     PVVVHCWRGGMRSAGIAWLLDLYGFNVFTIKGGYKSFRHFCLHQFELDHPMALVGGYT
                     GSGKTALLQALRQSGQAVIDLEQLASHKGSAFGNINMPAQPSQEMFENKLAIELYQYS
                     KHAVQPIWLEDESQRIGDVNIPFGFYQKMRQSPLFFLDIPFESRLSFIVQDYGKGDIE
                     KLVNAIIRIQKRLGGLEAKNAIQFLMDGDIKSCFSILLRYYDKWYLKGMEVHRENLRD
                     LLQKISMTDTDADRNAKRLLAAYQEGVGEMPE"
     gene            complement(3873..4364)
                     /locus_tag="VLL95_06635"
     CDS             complement(3873..4364)
                     /locus_tag="VLL95_06635"
                     /inference="COORDINATES: protein motif:HMM:NF044724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5606 domain-containing protein"
                     /protein_id="HSR38575.1"
                     /translation="MEYGRIISVTGLGGLYELVSSKNDGAIVKSLEDGSTRFVSNRVH
                     QFSHLESIEIYTLRDNVNLVEIFQAMEKADETIPDPKDAKLLRGYFEKVFPEMDFDRV
                     YASDMKKMLKWFGVLKKAGIELKLTEMPQEEVADQAAEEPAETEVAAAEEKKKATRKK
                     KAE"
     gene            4556..4855
                     /locus_tag="VLL95_06640"
     CDS             4556..4855
                     /locus_tag="VLL95_06640"
                     /inference="COORDINATES: protein motif:HMM:NF024143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HSR38576.1"
                     /translation="MNTTKKVLVGALSGLAVGVVFGILVAPASGKDTRDKLSMQADKL
                     RKKLNRLRNRAGDELEELEDVFNHEIAGLKDDVRQRVLNLIEAKRNKKVPEPSLS"
     gene            4986..5747
                     /locus_tag="VLL95_06645"
     CDS             4986..5747
                     /locus_tag="VLL95_06645"
                     /inference="COORDINATES: protein motif:HMM:NF011405.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HSR38577.1"
                     /translation="MEELKQQIDLARLPRHIAIIMDGNGRWAQEQGQDRLFGHFHGVE
                     SVRNIVEGCAELGVEYLTLYAFSTENWDRPDYEVNGLMELLVDTIRRETETLNKNNIR
                     LHVIGDRRMLSASVNKELDESLEITRGNTGLNLIMALSYSGRWELVNAVRNIAHDVEI
                     GLIKADDVNQAVLQRYLWTSDYPDPELMIRTSGEYRISNFLLFQLAYAELYFTDTRWP
                     DFRKKHLYEAIIDFQHRERRFGKTSAQVAPTAGQA"
     gene            5899..>6622
                     /locus_tag="VLL95_06650"
     CDS             5899..>6622
                     /locus_tag="VLL95_06650"
                     /inference="COORDINATES: protein motif:HMM:NF018899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HSR38578.1"
                     /translation="MSFKINSHRFLTVLMLIFAVAVKGQDTTVTSVDPELEAIFSQKI
                     PKEYVVGSVTVAGNKYFDNQLLLSIANLNAGDKVMIPGGDNFSRAINNLWGQNYFSNV
                     AIYITRLEKPNKIHLEIEVQERPRLQKFTFTGVKKSDVEDLQTKSGLVAGRIVTENSK
                     QLASEAIAKYYIEKGFRNTTVEIEEIPSKTVPNAEDLIFHIDKGNKVRVSDIFIGGNV
                     TKNDLRVKRQMKGTKEMSRMTIF"
BASE COUNT         1809 a         1644 c         1616 g         1553 t
ORIGIN      
        1 caatgtgcat tcacaaatgt gaacgatgga ttggtgccat agaatttttc aaccgggtga
       61 accgggcaca acgaggagca ccacccgctt ttccagtcat agaacaatcc caacagccaa
      121 cccgccgcta cacagccggc caacagcatg gctgtagcca aaccactttg gttgaacacg
      181 gcatgcctca ggggcacgat ggtgtacagc gacaccactg ccagcaggct tagccaggcc
      241 tgcaggttgc ggggcattat ttgctgtttg gaaataccca aatgccgtgg gagcaaattg
      301 gtgctggcaa gggggcatac atttcgccaa aaccctgtgg agatgaccag gagtgccggc
      361 gccaccggaa tgagtacatt ccaaaaaaga aggacaccaa gggaaggcca aaaaagcagt
      421 gccatgaaaa tgaatgcacc caccatccag aaaattacct gcagtacccg ccaaattcct
      481 ttggcagaat cctggtccct gcttcgcaat gcagattgcg ccaacccttg tcctccatgc
      541 gccattggca atactcaatt tttgaaggca gcaaattatg gtccggcatg gcgcggggat
      601 atgattcaaa tcatcccctg agtatcacag ctgctgacgc tttactacca gcatccaatc
      661 accttccagg ggcaggaaac cgtattcata gcaaaaggtg tacacattgc ctttcttgtt
      721 ggtgtactgg tgggtcatgt attgaaaatt gtaaccgcca tccagtaatt tctgtttggg
      781 gcacttaccc atttcttctc ccggggcaat tattctttcc agcagcctcc ggttttgccg
      841 caaaatggca ttgatctttt tgatgacagc gctgtcttct gccttcaatt gattgttata
      901 ctgggtgcgg cagtagtcat cgcaaaactt tttgtcgatg cggcctttca gcggtttgcc
      961 acagctaagg cactgctttt gagtgtgttc catggtagaa aaatagaaaa aattatccgt
     1021 gtttacacgg gtatacacgg ataaatacgg aagtaaacgg ataacatccg actccgggtt
     1081 tttgcccatc gcagctttgt atcaccaaac cggtaacacg gtagcaacca aaatcttcac
     1141 acaaaaaaca aacgttatga acgcactgaa gaaccgcgta caactgatcg gcaacctggg
     1201 cctcgatcct gaagtaaagg caatgcacag cggaaaaaaa atggcccgca ttcgtatggc
     1261 aaccaacgaa agctacacca acgcccacgg cgaaaccatc accaacacgc aatggcacaa
     1321 tattgtagcc tggggccgtg ctgctgaaat agcagacaag tacctggtga aaggtcttga
     1381 ggtagcggtg gagggaaaac tggtgaaccg cagctacacc accgagcagg gtgaaacccg
     1441 tttttgcacc gaaatccagg ccaacaacat tctcatcctt tcgcacaaaa aatgatcctc
     1501 aatctcaaaa tcaataaaac cgaaccgtta tgaactcact gaaaaaccgt gtacagctta
     1561 tcgggcacct gggtgtcgat cctgaaatga aaaccatcga gaatggtacc aaactggccc
     1621 gcctccgcct ggccaccaat gaaacctata ccaatgccaa gggcgaaaag gtgaccgaaa
     1681 cacaatggca caatgtggtg gcctggggca aaacggcgga gctggccgaa aaactcctgg
     1741 ccaaaggcgc tgaaaccgcc attgaaggca aactggtaag ccgctcctat accgacaagg
     1801 atggccagaa gaaatatgta accgaagtgg tagtggatga attcctgctg ttgagccgca
     1861 aatccactgc cgcctgaaac cttaaacacc cttaatcttt cactgcagca ttgcccctgg
     1921 tggcaatgct gttttcattt cacccaatgg atgccaatat atttgcggtt tatgagcaac
     1981 aataaaccaa ccctctttac ctgcctttca ccatcactgc tccacttgta cgatgtgcat
     2041 gatgccattg tggtggtgat cgatgttttc agggccacca gtaccgtggc ttccgccttg
     2101 tacaatggcg ctgaaagaat aattccggta gacagcgtgc agggcgctat agaactgggc
     2161 aatgaactgg gcgccatcac tgcaggtgag cgggacggaa aaattgctcc gggtctgcaa
     2221 tatggcaatt cgcctttgga gtatccccgt tcattcgtag agggaaaaac cctggtactc
     2281 accaccacca atggcacccg cctgctgcac atggcactgc gaaacggcgc cacagaagta
     2341 ataaccggtg cgtttgccaa cctgagtgcg gtatgcgatc acctggtagc cagcggcaaa
     2401 aatgtgatac tgggctgtgc tgcctggaaa gatcgtgtga atatggaaga ctctcttttt
     2461 gcaggcgctg tagtgtcgag agtgagggag catttccaga ttttttgcga tgccagcctg
     2521 gcggcagaaa cgctgtacag gcatacacag gtagatacct ggaatttcat caggaagacc
     2581 acccattatc atcgactggc ttcgtatggg ttggaaaaag acatgcaatg gtgcatcagc
     2641 ctggatgtag caaacgtgct gcccgtttat aaagacggcg cattggtggt acattcgtaa
     2701 gagcctcaac cctttctggt gcctataacc tccctttcca tatcacaata ctttaccagt
     2761 tacaggcatg ccctgctgat tgatgtgcga agccccggag agtacaacca tgctcacata
     2821 cccggcgctt tgtcattgcc cctctttacc gatgaggaga ggaaagtggt gggcaccacc
     2881 tacaaacagg aaagcaggga aaaagccatc aagattgggc tgaaatattt tggccctaaa
     2941 atggtgagga tgattgagca ggtggaaaag tggttgaagg aaaaagaggg cacccgcaca
     3001 gatgccgctc cccaacaacc ttttcctgta gtagtgcatt gctggcgggg cgggatgcgc
     3061 agtgcaggca ttgcctggct gctcgattta tatgggttca atgtgtttac tataaaaggc
     3121 ggctacaaat cgttccgcca tttttgcctg caccaatttg aactggatca tcccatggcg
     3181 ctggtaggcg gctacaccgg cagcggcaaa actgcgttgc tgcaggccct gcgccaatca
     3241 ggacaagcgg tgattgacct ggaacaactg gcgagccaca aaggatctgc atttggcaac
     3301 atcaatatgc cggcgcagcc ttcgcaggaa atgtttgaga acaagctggc catcgagctt
     3361 taccagtatt cgaagcatgc tgtacagccc atatggctgg aagatgaaag ccagcgaata
     3421 ggcgatgtca atattccttt cggattctac cagaaaatgc ggcagtcgcc cctgttcttc
     3481 ctggatatac cttttgaaag caggctttct ttcatcgtgc aggattatgg aaagggtgat
     3541 attgaaaaac tggtcaatgc catcatcaga attcaaaaac gactgggcgg tttggaagca
     3601 aagaatgcca tccagttttt aatggatgga gacatcaaat cctgtttttc gatactgctt
     3661 cgctactacg acaaatggta tctcaaaggc atggaagtac accgcgaaaa cctccgggat
     3721 ttgctgcaga agatatccat gacagataca gatgcggatc gaaacgccaa gcggttgctg
     3781 gcagcttacc aagagggcgt tggtgaaatg cctgaataaa aaaatgaccg gttttcccgg
     3841 tcattcaaat atttagtgtt tgaaggcttg gcttattcgg ccttcttttt cctggtagct
     3901 tttttctttt cttcagcggc agccacttca gtttcagcag gttcttcagc tgcctggtcg
     3961 gccacttctt cctgcggcat ttcagtcagc ttcagttcaa tgccggcctt cttcaaaacg
     4021 ccaaaccact tcagcatctt tttcatatcg ctggcataca ccctgtcaaa atccatttcc
     4081 gggaatacct tttcaaaata accgcgcagc agtttggcat ctttcggatc ggggatggtt
     4141 tcatccgcct tttccattgc ctgaaatatt tctaccaggt ttacattgtc acgcaaagtg
     4201 tagatttcaa tactctccag gtgcgaaaac tggtgcaccc tgttgctcac aaaccgtgtg
     4261 ctgccatctt ccaggctttt tacaatagcg ccgtcatttt tggaggaaac caattcataa
     4321 aggccaccca atccagttac agaaatgatt ctgccgtatt ccataggtca attgttttat
     4381 ggttctgttt taaggggcgc aatgtaatca acattgcatt accagcggcc tgaaagagtg
     4441 ggcaaaggtt tgttgttttt gtcctcaaaa atccttgcca aatcatagac tccgtgtcat
     4501 tttttgcgta ccttttatgg gttgaatatt cattcatttt ctaaatgttt tttgtatgaa
     4561 caccactaag aaagtactgg taggagccct ttcgggattg gctgttggtg tagtatttgg
     4621 catactggta gcaccagcaa gcggaaaaga cacccgtgat aaactgtcaa tgcaggctga
     4681 caagctgcgc aaaaaactca acaggcttcg caatcgtgcc ggtgacgagt tggaagaact
     4741 ggaagatgtt ttcaatcatg aaattgcagg gctgaaagac gatgttcgcc agcgtgtgct
     4801 gaacctgatt gaagccaaaa ggaacaagaa agtgccagaa ccttctcttt cctgacggtc
     4861 cccgctcccg accagcctga ttttcagctt catccccggc atgcccgggg attttgttat
     4921 aatctaaacc caatcgcttt cagcctgccc aatggcacta catttgccac caaattcgga
     4981 ttgcaatgga ggaactgaag caacaaattg atttggcccg cctgcccagg catatcgcca
     5041 tcattatgga tggcaatggc cgttgggcgc aagaacaggg ccaggacagg cttttcggcc
     5101 attttcatgg cgtggaaagt gtacgcaaca ttgtggaagg ctgcgccgaa ctgggcgtgg
     5161 aatacctcac attgtatgcc ttcagtactg aaaactggga tcgcccggat tacgaagtaa
     5221 atggcctgat ggaactgctg gtagatacca tccgccgcga aacagaaacc ctgaacaaga
     5281 acaacatacg cctgcatgta attggtgacc gccgcatgct gagcgccagc gtaaacaaag
     5341 aactggacga aagcctggaa ataacccgcg gcaataccgg gctgaacctg ataatggccc
     5401 tcagctacag cggccgttgg gaactggtaa atgcagttcg gaacatagcc cacgatgtgg
     5461 aaattggatt gataaaggcc gatgatgtaa accaggcggt gctgcagcgg tacctgtgga
     5521 ccagcgatta ccccgatccg gaactgatga tcagaaccag cggagaatac aggatcagca
     5581 atttcctgct gttccaactg gcctatgctg aattgtactt taccgacacc cgctggcccg
     5641 acttccggaa gaaacacctg tacgaagcca tcattgattt tcagcatcgc gaaaggcgat
     5701 ttggcaagac gagtgcccag gtggcgccca ccgccggaca ggcctgaaac ccaagccaat
     5761 actccgtgtg gcgaaagcct tgattggatt ggctttccca ttacttttgc gccgctcatt
     5821 taacaaacac ttaccaccaa agccactaat ttgccggctt cccgtgtggg taagaagacc
     5881 aactgaaacc atctatacat gtcctttaag atcaacagcc acaggttttt gactgttctg
     5941 atgctgattt ttgctgtggc cgttaagggg caggacacta ccgttacctc tgtcgatccg
     6001 gaattagaag ccatcttcag ccagaaaata cccaaagaat atgtggtagg ctcagttacg
     6061 gttgcgggca ataagtattt cgataaccag ttgttgcttt caatagccaa cctgaatgcc
     6121 ggcgacaagg tgatgatacc gggcggagac aatttcagcc gggccatcaa caatttgtgg
     6181 gggcagaatt atttcagcaa cgtagccatt tacattaccc ggctggaaaa gcccaacaaa
     6241 atccacctgg aaattgaggt gcaggaaaga ccacgtttgc aaaagttcac tttcactggt
     6301 gtgaagaaga gcgatgtgga agacctgcaa acaaaaagcg gcttggtagc aggccgcatt
     6361 gtgacggaaa acagcaagca gctggcatct gaagccattg ccaagtacta catcgaaaag
     6421 ggattcagaa ataccaccgt tgaaattgag gaaataccca gcaaaacggt accgaatgcc
     6481 gaggatctga ttttccatat agacaaaggc aacaaggttc gcgtcagcga cattttcatt
     6541 gggggcaacg tgaccaagaa cgatctgcgg gtgaagcggc agatgaaggg gaccaaggaa
     6601 atgtcccgca tgaccatatt cc
//
LOCUS       DATIQF010000400         2928 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_265117,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000400 DATIQF010000000
VERSION     DATIQF010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2928
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265117"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(103..555)
                     /locus_tag="VLL95_06655"
     CDS             complement(103..555)
                     /locus_tag="VLL95_06655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38579.1"
                     /translation="MKRYLLAAAFGLFSLASFANTGTQSFKAPYQAKENLKQQYGEVK
                     DVTWKEAQGNLIRADFVQDGQAITVFYDKSGEPVATTVVVDKSQLPYRLKTALEKELK
                     GQTIEELFYVDAPDQNAYFFSYSDNGKKKVFRAYDNGNIREVSKLLKF"
     gene            complement(769..2559)
                     /locus_tag="VLL95_06660"
     CDS             complement(769..2559)
                     /locus_tag="VLL95_06660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38580.1"
                     /translation="MERTGPLDSSFIKLKVELRRPSCKNAVINIAVFDSLLKTVANQR
                     YFLPPSGMLNISVPIQDPNKLFGAVIYSTCDEVVSDDAFIYSPGMDTSIFPLKNRSMR
                     EVPFYFEGGKALKNYYTRVLLDLNGRKIAPAAPVVVRNQHRQVVAKGVPDANQILAID
                     LPLFEHDQYRIETFDGNLIKEVSAADTTVVAKTGISLRTLLNDNVLHVDIRKGIAEGT
                     QQAKLTVHLKETVLYESLAIFREDTSVVETTVPLQGLENALLELRLTDEAGKVLASRM
                     VTANGSKALSSTDDLFFPFPIADTNRINDYLIAASKSDRRLKEQPEFTARFLAPGLKG
                     KTINYQIQLQDGAIEEIGNVVVDTAGIISISGLRFKGKASILFYGNDIASLASIAQIN
                     DTLPSSILAQIKSKMQEDKAAGKMPVSMQRTDGIMTGEGAAEVVGKTKSRSELLEEKY
                     ISSNMFKEQFSISLDLENDPYTANYDVYDYLLRKVPGLSVKSDPRNPSVRNFLYRQGV
                     IEVYLDETYIGQVSDLPFKNLQDIGYIRFLKKPVSSSRNAAGGAMLRGSSAIAGVTGT
                     LLIYTKKQAGDMSPKKAQTNRLEIMGFANE"
BASE COUNT          804 a          663 c          604 g          857 t
ORIGIN      
        1 tgcaaaacag caagcccctc aaccaacagg cactggatgt acaaaaagag aaaccggcca
       61 tggaaatggc cggtgaccta aactaacaac atgtattgaa tgctaaaatt tcaacagctt
      121 ggatacttca cggatattac cattgtcgta ggccctgaag actttctttt tgccattatc
      181 agaataggaa aagaagtaag cgttctggtc gggcgcatcc acgtagaaca attcttcgat
      241 ggtttggcct ttcaattctt tttccagcgc tgtcttcagt cgataaggca attggctctt
      301 gtcgaccacc acggtagtgg caacgggctc accgcttttg tcgtaaaaca cggtaatggc
      361 ttgtccatcc tgaacgaaat cggcacggat aaggttgccc tgggcttcct tccaggttac
      421 atcctttact tcgccatact gttgcttgag gttttcttta gcctggtaag gggctttgaa
      481 agattgagta cctgtgttgg caaaagatgc cagactaaaa aggccgaatg ctgcggccag
      541 caaatagcgt ttcatgtgtt tgtgttttgt gtgagtaaaa tgaattgctg aaacaaaatt
      601 gttgcagata tgacgattgt aaaagcaata cgttacagcc ggaggaaaaa ataggatgaa
      661 ctgcattggc ggctgacaac atgatgagcg gcaaggcgtg ttaatggttt tagcaatggc
      721 caatttcaac caaggcttca ttaacaagaa ggcgctccac ttatcgaatt attcattggc
      781 aaaacccatg atctccagtc gattggtctg tgccttttta ggagacatat cccctgcttg
      841 cttttttgta taaataagaa gcgttccagt aaccccggca atagcagaac tgccacgcag
      901 catcgctccg cctgcagcgt tgcggctact gctcactggc ttttttagaa aacggatgta
      961 tccaatgtcc tgcaggtttt tgaatggcaa atcggatacc tgaccgatat atgtttcatc
     1021 taaatagact tcaatcacgc cctggcgata aaggaaattc cgaacggatg gattgcgtgg
     1081 atctgacttc accgataagc ccggcacttt tcgcagaagg taatcataca catcataatt
     1141 ggcagtatag gggtcatttt ccaaatcgag actgatggaa aattgctctt tgaacatatt
     1201 tgagctaatg tatttttctt ccaacagctc actgcgggat ttagtcttgc caaccacttc
     1261 agctgcacct tctccggtca tgatgccatc ggttcgctgc atactcacag gcattttgcc
     1321 tgcagcttta tcctcttgca tctttgattt gatctgtgcc agtatacttg acggaagtgt
     1381 atcatttatc tgagcaatgc tggccagtga agcgatatca ttcccataaa aaagaatgct
     1441 ggccttcccc ttaaaccgca atcctgaaat gctgatgatt ccagcggtat ccaccactac
     1501 attaccaatt tcttcaatag caccgtcttg taattgaatt tgatagttaa tggtttttcc
     1561 tttcaaccca ggcgctaaaa accgggcagt gaattctggc tgttctttca agcgcctatc
     1621 actcttgctg gctgcaataa gatagtcgtt gatgcgattc gtatcagcaa ttggaaaagg
     1681 gaaaaacaga tcatctgtgc tggagagagc cttacttcca ttcgcagtta ccattctcga
     1741 agcgagaacc tttcccgctt catctgtaag ccttaactct aataatgcat tctccaggcc
     1801 ttgcaaagga accgtggttt ccacaacact ggtgtcttcg cgaaaaatcg ctagcgattc
     1861 atacaacact gtttctttta aatgcaccgt caacttcgct tgttgagtcc cttcggctat
     1921 ccctttacga atatctacgt gcaatacatt atcgttcaat aaagtgcgta aagaaatgcc
     1981 agttttagca acgactgtag tatctgcggc agacacctcc tttattaagt tgccatcaaa
     2041 tgtttcaatg cggtattggt cgtgctcaaa caatggcaaa tcgattgcaa gaatttgatt
     2101 ggcatccggc actcctttgg ccactacttg acgatgttga ttgcgaacta caactggcgc
     2161 tgcaggagca atcttgcggc cattcaagtc taacagtact cgtgtatagt aatttttcaa
     2221 tgcctttcca ccttcaaaat agaatggcac ctccctcatt gaacgattct tcaatggaaa
     2281 aattgaagtg tccatgccag gactgtaaat aaaggcatca tctgatacaa cctcatcgca
     2341 ggttgaataa atgacagcgc caaacaattt atttggatcc tgaataggaa cgctaatatt
     2401 caacatgcca cttggtggaa gaaaatagcg ttgattggct acggttttta agaggctatc
     2461 gaatactgca atattgatta cagcattttt gcaagatggt ctgcggagtt caactttcaa
     2521 cttgatgaaa gaactgtcta atggaccagt tcgctccaca atcattccat ggttttgggc
     2581 atgtaaaaaa ttacaagaac atagtaacag aactataaga cccacaagag ttttcacatt
     2641 tattaatatt cgttattgga ttggtagtaa gtctataatt acaccaaatc atttcccgcc
     2701 agttcggttt tagtgcctta gatgctgatg tcctattaca ccatattcac ttgttctcct
     2761 gcttattctt ccttgccacc cttttcaccc acaaaccaat cctctttatc gcgaaacaac
     2821 acattgaacg tggtgagcga accgtaaatg cgggtgatgt attgctgcag gttgatcttg
     2881 tcttcatcag tcagcacttt atgactgttg atgttttgct ccagatcg
//
LOCUS       DATIQF010000401         1703 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_128231,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000401 DATIQF010000000
VERSION     DATIQF010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1703
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128231"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1345)
                     /locus_tag="VLL95_06665"
     CDS             complement(<1..1345)
                     /locus_tag="VLL95_06665"
                     /inference="COORDINATES: protein motif:HMM:NF018528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 125 protein"
                     /protein_id="HSR38581.1"
                     /translation="MKRRQFIRTGALASSALVVSKYGFGQQYDFPVVRVPVGERRFKS
                     KAIEDLITKLQKDTGNKEIGWLFNNCFPNTLDTTVEFEIINGKPDTYVITGDIDAMWL
                     RDSSAQVWPYLPFVKEDPHLKELIAGVINRQTKCILLDPYANAFYKDINKVSEWKSDL
                     TEMKPGIHERKWEIDSLCFPIKLAHGYWQQTGDLSPFNREWKEAMRAVIRTFKEQQRL
                     EGKGPYSFQRTTSWATDGVPLGGYGYPAKPNGMICSMFRPSDDATIFPYLIPSNWFAV
                     FALDWLTDMAKAAGDEALSRQAFEMGTSLAKVLWDGAIVYTEKFGNIWVYETNGLGSC
                     NLMDDANMPSHLSIPYLADNFFANARQTIWENTRRYVLSHSNPFYFSGKAGAGIGSPH
                     TGLDMIWPMSVAVQGLTSTDENEMKNCLQLLQNCHAGTGFMHESFHKDDPSKYTRK"
     gene            1515..1585
                     /locus_tag="VLL95_06670"
     tRNA            1515..1585
                     /locus_tag="VLL95_06670"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1547..1549,aa:Gln,seq:ttg)
BASE COUNT          377 a          393 c          439 g          494 t
ORIGIN      
        1 acttccgggt atattttgac ggatcgtctt tgtgaaaact ttcatgcatg aacccggttc
       61 ctgcatggca gttttgcagc agttgaagac agtttttcat ttcattttca tcggtgctgg
      121 tgagcccttg tacggccaca ctcatgggcc agatcatatc cagcccggtg tgagggctgc
      181 caatgcctgc cccggccttt ccgctgaaat agaatgggtt tgagtgagac aacacatagc
      241 gccgggtatt ttcccaaatg gtttgccttg cattggcaaa gaaattgtca gcgaggtatg
      301 gaatggaaag atggcttggc atgttcgcgt catccatcag gttgcaactg cccaatccat
      361 tggtttcgta aacccagatg ttgccgaatt tttctgtgta tactatggct ccatcccaca
      421 aaacctttgc cagcgaggtg cccatttcaa aggcctgcct ggatagggcc tcatctcctg
      481 ctgcttttgc catgtcggtc agccagtcga gggcaaaaac tgcaaaccaa ttgctgggaa
      541 tgaggtaggg gaaaatggtg gcatcatcgc tgggcctgaa catggaacag atcatgccgt
      601 tgggtttggc cgggtagccg tacccgccca aaggaacgcc atcggtagcc cacgatgtgg
      661 tgcgttgaaa agagtagggg cccttgcctt ccagtcgctg ctgctctttg aaggtgcgaa
      721 tcacagcacg catggcctct ttccattcac ggttgaatgg ggagaggtcc ccggtttgct
      781 gccagtaccc gtgggccagt tttatcggga agcaaaggct gtctatttcc cactttcttt
      841 catggatgcc cggcttcatt tcagtaaggt ccgatttcca ttcgcttacc ttattgatgt
      901 ctttgtaaaa agcgttggca taggggtcga gcaggatgca tttggtttgg cggttgatga
      961 cgccggctat cagttctttc aggtgcgggt cttcttttac aaagggcagg taaggccata
     1021 cctgtgccga actgtctctc agccacatgg catcaatatc gccggttata acgtaggtat
     1081 ctggcttacc attaatgatc tcgaattcca cggtggtgtc cagtgtattg ggaaagcagt
     1141 tgttgaagag ccagcctatt tccttgttgc cagtatcctt ttgcagcttg gttatcaggt
     1201 cctctattgc tttgctcttg aatcgccttt cgcccactgg cactcttact acagggaaat
     1261 catattgttg cccgaaaccg tatttgctca ccacaagggc tgaggaagcc aatgccccgg
     1321 tgcgtatgaa ttgccttctt ttcattgtaa aacaggtcgg tttttagtct ttggaatgca
     1381 gtgttgcgac tggaaaagag tgctaaaggt atctttcaca ctttgttttg ccggtgcaaa
     1441 aagattggaa aaaaatcagg aaacattttg ggttgaatag ggctcacggc tatttttgcg
     1501 ctccaattac ggattgatcc atggtgtaac ggtagcacta cagattttgg ttctgtctgt
     1561 caaggttcga atccttgtgg atcaacgccc aaaaggccac cagaaacggt ggcttttttt
     1621 attggctccc ggtgaggggc ataaaaaaag cacggaaacc attccgtgct tttttgttcg
     1681 gcaattttta ttgttagttg atc
//
LOCUS       DATIQF010000402         1696 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_158613,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000402 DATIQF010000000
VERSION     DATIQF010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1696
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158613"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..886)
                     /locus_tag="VLL95_06675"
     CDS             complement(<1..886)
                     /locus_tag="VLL95_06675"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: protein motif:HMM:NF002320.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HSR38582.1"
                     /translation="MSLQARIFSGTGSEYLAAKIAKNFGVELGAVKATRFSDGEIGVE
                     FLESIRGDYVFLVQGTFAPADNLMELLLLIDAARRASAYKVIAVIPYYGYARQDRKDR
                     PRVAIGSKLVANMITAAGADRVITMDLHAPQIQGYFDIPVDHLDSSAVFIPFIERLGL
                     ENLTFAAPDVGSTNRVREVASYFNSEMVIFDKHRKRANEIASMTVIGEVADRDVVLID
                     DICDTGGTLAKAAALLKDKGARTVRAFCTHPVLSGKAFENIGSSVLEELVVCDTIPLR
                     EGAPDNITVVSVADLFAVA"
     gene            981..1688
                     /gene="radC"
                     /locus_tag="VLL95_06680"
     CDS             981..1688
                     /gene="radC"
                     /locus_tag="VLL95_06680"
                     /inference="COORDINATES: protein motif:HMM:TIGR00608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HSR38583.1"
                     /translation="MENFNKPHTPIKHWANDDKPREKMIAKGADSLSTVELLAILINN
                     GTRSKTAIDLARDLMQAYGNRLGQLAKLSLKDIQKIKGIGPAKAVTIKAALQLAVMLE
                     QENFQDIPVIRTSRDIAHYLRKRLEHEPREVFVALYLNKKNRVLASHIIAAGGIDATI
                     ADVRIILKKALEEQATSIILSHNHPSGNLRPSQRDLELTKKIMEAARLIDVQVIDHII
                     VSDEGYYSFADDGILNK"
BASE COUNT          447 a          464 c          415 g          370 t
ORIGIN      
        1 tggctacggc aaacaggtca gccacgctta ccaccgttat gttatccggt gcgccttccc
       61 gcagcgggat cgtatcgcag accaccagtt cttccagcac actgctgcca atgttttcaa
      121 aagccttgcc actcagtacc gggtgggtac aaaaagcacg aacggtgcgg gcacctttgt
      181 ctttgagcaa agcagcggct tttgccagcg taccaccggt gtcgcatatg tcgtctatca
      241 gcaccacgtc cctgtcggct acttcaccta tcaccgtcat gctggcaatt tcgttggcac
      301 gtttgcgatg cttgtcgaaa atcaccattt cagaattgaa gtagctggct acttcacgca
      361 cccggttggt gctgcctaca tcaggggccg cgaacgtgag gttttcgagt cccagccttt
      421 caatgaaagg aatgaacacg gccgaagaat caaggtggtc caccgggatg tcgaagtatc
      481 cttgaatttg cggggcatgc aggtccatgg tgatcaccct gtcggcaccc gccgcagtga
      541 tcatgttggc taccagtttg gagccgatgg ctacccttgg cctgtcttta cgatcctggc
      601 gggcatagcc gtagtaaggg atcacggcaa tcactttgta cgccgaagca cgacgtgccg
      661 catcaatcaa cagcagcaat tccatcaggt tgtcggccgg tgcaaaagtg ccctgcacca
      721 ggaagacata atcaccgcga atgctttcga gaaattcaac accaatttca ccatcgctga
      781 aacgggtggc tttaacagcg cccaattcaa cgccgaaatt ctttgcgatt tttgccgcca
      841 ggtattcaga accggttccg gaaaaaatcc ttgcctgcag gctcataacg tagctagatt
      901 tttggtcgaa gtatgtattt tggaaaacgg actacggctg cgaagatagg ggcatcgttt
      961 accgtactac caaatgagca atggaaaatt tcaacaaacc gcacacaccg ataaagcact
     1021 gggccaacga tgacaagcct cgtgaaaaaa tgatcgccaa aggggctgac agcctcagta
     1081 ccgtggaatt gctggccata ctcatcaaca atggtacccg cagcaaaacc gccatcgacc
     1141 tggcccgcga cctcatgcag gcttacggca accgcctggg ccaactggcc aaactcagcc
     1201 tcaaagacat ccagaaaatt aaaggcatcg ggcccgccaa agccgttacc atcaaagcag
     1261 ccctgcagtt ggccgtaatg ctggaacagg aaaactttca ggacatccct gtgatcagaa
     1321 ccagcaggga cattgcccac tatttacgaa agcgcctgga gcatgaaccc cgagaggtat
     1381 ttgtagccct gtatctcaac aaaaagaacc gggtgctggc ctcgcatatc attgcggcag
     1441 gcggcattga tgccaccatt gccgatgtgc gtatcatttt gaaaaaagcg ctggaagaac
     1501 aagccacttc cattatcctt tcacacaatc atccctccgg caatttgcgg cccagccaaa
     1561 gagacctgga acttaccaaa aagatcatgg aagcggccag gctgattgat gtgcaggtta
     1621 tagatcacat tattgtgagc gatgaaggct attacagttt tgccgatgat ggcatcttga
     1681 acaaataaga tcaggc
//
LOCUS       DATIQF010000403         3780 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_128276,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000403 DATIQF010000000
VERSION     DATIQF010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3780
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128276"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1999)
                     /locus_tag="VLL95_06685"
     CDS             complement(<1..1999)
                     /locus_tag="VLL95_06685"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HSR38584.1"
                     /translation="MQDLLAGLNEQQREAVIHKDGPLMIVAGAGSGKTKVLTTRIAYL
                     MGHYGVDAFNILALTFTNKAAAEMKERIQKLLGNNEARNLYIGTFHSVFARILRGEAH
                     HIGYPNNFTIYDTDDSRSVIKTVVQELNLDDKTYKPNVVHNRISSAKNALITPEEYAQ
                     DQYILQEDTRQHRPAMARVYDAYCKRCFKNGAMDFDDLLLKMYELLRDFPAVLHKYQH
                     KFKYVMVDEYQDTNTTQYAITKLLAAAHENICVVGDDAQSIYSFRGATIENILQFQKD
                     YEDVKVVKLERNYRSTATILNIANEVIKNNKNQLPKELWTEADAGDKVKIVRVMTDND
                     EGRYVADAIQEQKLRNHFRNNDFAILYRTNAQSRAYEECLRRMNIPYRIYGGISFYQR
                     KEIKDFIGYLRIIVNTRDEEALKRIINYPVRGIGKTSIEKLVTEANDRNISMWQALEQ
                     AQNIGIRGASLESMQAFVQMIKYFQSMLKQNNAYEVAFQVGKHTGIVKELFNDKSAEG
                     LARYENIQELLNSIKEWVDDAENRSQIDEEGVIIEPDTDVNTTTNNTANDGLLFGNEA
                     PMESNTPSGTTGNVASLGGYLQQITLLTDADNDKDENADVVKLMTIHAAKGLEFPCVF
                     VGGMEESLFPNAMAINTREELEEERRLFYVAVTRAKSKLWIT"
     gene            complement(2138..3598)
                     /locus_tag="VLL95_06690"
     CDS             complement(2138..3598)
                     /locus_tag="VLL95_06690"
                     /inference="COORDINATES: protein motif:HMM:TIGR01891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSR38585.1"
                     /translation="MLNVLSMRTAATVCCVVVANMLCAQKPAPNTALKEKALVNLQAS
                     YDTYKQTALEIWKYAEVGYKEVQSSALLQKTLRENGFEVQAGVAEIPTAFVATYGSGK
                     PVIGILAEYDALPGLAKEAVPEKKPIAGQKAGHGCGHHLFGTASVAAGIEIKKLIEEK
                     KFSGTVKVYGCPAEEGGSGKVYMVRAGLFNDVDAVIHWHPGNENDVTMTSALANKSAK
                     FRFRGLSAHAAMAPEKGRSSLDAVEAMNYMVNMMREHIPQETRIHYVITDGGKAPNVV
                     PDYAEVYYYVRHPKRADVVEIFDRVVKAAEGAALGTGTKLEYEIIGGTHDLLLNRTLA
                     ETMQQNMEKIGGFTYTAAEAAFAKKIQSSFTFAYPDINATQNITPLKTIPDAGGGSTD
                     VGDVSYAVPTVGCGTATWVPGTPAHSWQAVACGGTEVGTKGMMLAAKTMALTAIDLYT
                     NPAIIAKATEEFRKVKGDYQYQALLGDRKPALNYRD"
BASE COUNT          741 a         1001 c          980 g         1058 t
ORIGIN      
        1 aggtgatcca taacttgctt ttggcacggg taactgccac ataaaacaaa cggcgttctt
       61 cttccagttc ttcgcgggtg ttgatggcca tggcattggg aaataaactt tcttccatgc
      121 cacccacaaa cacacaaggg aattccagtc ccttggcagc gtggatcgtc atcagcttta
      181 ccacatcggc attttcatct ttgtcattat cggcatcggt gagcaaagtg atctgttgca
      241 ggtagcctcc gagtgaagcc acgttgccgg tagtacccga tggcgtattg ctttccattg
      301 gggcttcgtt gccaaacagc agaccgtcgt tagccgtatt gttagtagtt gtgtttacat
      361 cggtatccgg ctcaatgatc actccttctt catctatctg gctccggttt tctgcatcgt
      421 ccacccattc tttaatggag ttcagcaatt cctggatgtt ttcgtaacgg gccaggcctt
      481 cggcactttt atcgttgaac agctctttca caataccggt gtgcttgcct acctggaacg
      541 ccacttcgta agcattgttc tgcttgagca tgctctggaa gtacttgatc atttgcacaa
      601 aggcctgcat gctctcgagg ctggcgccac ggatgccaat gttctgtgcc tgctccagcg
      661 cctgccacat gctgatgttg cgatcgttgg cttctgtcac caatttctcg atgctggttt
      721 tgccaatgcc acgaaccggg tagttgatga tgcgcttcag cgcttcttca tcacgggtgt
      781 ttacaatgat gcggaggtag ccaataaaat ccttgatctc cttgcgctgg taaaagctga
      841 tgccgccata aatacgatag ggtatgttca tgcggcgcag gcattcttcg taggcccggc
      901 tttgcgcatt ggtgcggtaa aggatggcaa aatcgttgtt gcgaaaatga tttcgcagct
      961 tttgctcctg tatggcatcg gccacatagc ggccttcatc gttatcggtc atcaccctta
     1021 cgatcttcac tttgtcgcct gcatcggctt cggtccacag ctctttgggc agctggttct
     1081 tgttgttctt gatgacttcg ttggcaatat tgaggatggt ggcggtgctg cggtagttgc
     1141 gttccagctt taccactttc acgtcttcat aatccttttg aaactgcagg atgttttcga
     1201 tggtagcgcc acggaagctg taaatgcttt gggcatcatc gcccaccacg caaatgtttt
     1261 catgcgctgc cgccaacagt ttggtgatgg cgtactgcgt ggtgttggta tcctggtact
     1321 catccaccat cacatatttg aacttgtgct ggtacttgtg cagcacggcc ggaaaatcgc
     1381 ggagcagttc gtacatcttc agcagcaggt cgtcgaaatc catggcgccg ttcttgaagc
     1441 agcgcttgca gtaggcatcg tacacccgag ccatggccgg tcggtgttgc cgggtatctt
     1501 cctgcaggat gtactggtcc tgtgcgtatt cttctggggt gatcagtgca ttcttggccg
     1561 agctgatgcg gttgtgcacc acgttgggtt tgtacgtctt gtcgtcgagg ttcagttcct
     1621 gcaccacggt cttgatcacg ctgcggctgt cgtcggtgtc gtaaatggta aagttgttgg
     1681 gatagccaat gtggtgggct tcgccccgca ggatgcgggc aaacacactg tggaaagtgc
     1741 cgatgtagag attgcgggct tcgttattgc ccagcagttt ctggatacgt tctttcattt
     1801 cggcggctgc cttgttggta aaggtgagcg ccagtatgtt gaatgcatcc acgccataat
     1861 gccccatgag ataggcaatg cgggtggtaa gcactttggt ttttccactg ccggccccgg
     1921 ccactatcat cagcggcccg tctttgtgga tgacggcttc ccgctgctgt tcattcaatc
     1981 ctgctaatag atcctgcata agtggtgcaa tttacagccg gggcaccgcc atcacatccg
     2041 ggtggataat ttttagggat cgttcaacgc atacggccgg cgcaaaaaaa accggatggg
     2101 cagcgcctca tccggttggt aattattgaa ccaatggtca atcgcggtag ttgagtgccg
     2161 gctttctatc gcccagcaat gcctggtact ggtagtcgcc ctttactttc ctgaattctt
     2221 ccgtggcttt ggcaatgatg gctgggttgg tgtacaggtc aatggcagtg agtgccatgg
     2281 tcttggcggc cagcatcatt cctttggtgc ccacttctgt gccgccacag gccactgcct
     2341 gccagctgtg tgccggtgtg ccgggcaccc aggtagccgt gccgcaacct accgtaggca
     2401 ccgcatagct tacgtcgccc acatcggtac tgccaccgcc ggcatcgggt attgttttca
     2461 atggagtgat gttttgggtg gcattgatat caggataggc aaaggtgaag gaggactgta
     2521 tctttttggc aaacgccgct tcggcagctg tgtaggtgaa gcctccaatc ttttccatgt
     2581 tctgctgcat ggtttcggcc agggtgcggt tcagcagcag gtcgtgcgta ccgccaatga
     2641 tttcatattc caatttggta ccagtgccca atgcggcgcc ttcagcggct ttcaccaccc
     2701 ggtcgaatat ttccaccaca tcggcccgct tgggatgacg cacatagtaa tacacttccg
     2761 cgtagtcggg caccacgttc ggcgccttgc ctccatcggt gatcacgtag tggatgcgtg
     2821 tttcctgcgg aatgtgttcc cgcatcatgt tcaccatata gttcatggct tccacggcgt
     2881 ccaaagatga acgtcctttt tctggggcca tggccgcatg ggcgctcagg ccgcgaaaac
     2941 ggaacttggc agatttgttg gccagcgcac tggtcatggt cacatcgttt tcatttccgg
     3001 gatgccagtg tatcaccgca tccacgtcgt tgaacaaacc ggcccgcacc atatacactt
     3061 tgccactacc gccttcttcg gcagggcagc cgtatacttt caccgtaccg ctgaacttct
     3121 tttcttcaat cagttttttt atttcgatac ctgcggctac actggcagtg ccaaacaaat
     3181 ggtgaccaca accgtgcccg gctttttgcc cggcaatcgg tttcttttca ggaacggctt
     3241 ccttcgccaa accaggcaac gcatcatact ctgccagaat gccaatcacc ggcttgccac
     3301 ttccgtaagt ggctacaaag gcggttggaa tttccgctac gccagcctgc acctcgaaac
     3361 cattttccct gagtgttttt tgcagcagtg cactgctctg tacttccttg tatcccactt
     3421 ccgcatactt ccatatttcc aatgcagttt gcttgtaggt atcatacgat gcctgcaggt
     3481 tgaccagtgc cttttctttt agggcggtat tgggtgccgg cttctgggca cacaacatgt
     3541 tggcaacaac aacacagcac acagtagcag cagtgcgcat actcagcaca ttcaacataa
     3601 gcgaaagttt agattgggaa agtatgaaga ttagacgaaa tgcgaaccag aaaccttcag
     3661 tgcgttaccg ggggtgcttg tagcccagta tgttccattg gtaggtatcc tccggattga
     3721 tgtgcttgcg tttcagttct gtcgccaacc ggtattttcc ggtacggctg tcctgctcca
//
LOCUS       DATIQF010000404         1845 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_280092,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000404 DATIQF010000000
VERSION     DATIQF010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1845)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1845)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1845
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280092"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..453
                     /locus_tag="VLL95_06695"
     CDS             <1..453
                     /locus_tag="VLL95_06695"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HSR38586.1"
                     /translation="IAEWLAILVMLAILYALQRQLLKRRIPQGMESFSNATMKAPRLF
                     VYAIVFFAYLFCYEVYFRGYFLMYALRGEPLYWVIGYNSLLYALVHLHKGRQQTLAAI
                     PFGILLCLVTLWTGHIWFAWLVHVMLELGIEVRLLSGKAITHHQKASV"
     gene            450..1433
                     /locus_tag="VLL95_06700"
     CDS             450..1433
                     /locus_tag="VLL95_06700"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HSR38587.1"
                     /translation="MKVYVTGGTGYIGKDLVKRLLEDGEEVVAMYRSEKPPYEWPGLQ
                     WSKADLNNIEAMKKGMQGCEGVYHMAGLARLWHPDKDAFFTMNVEGTRNVIAAAEQSG
                     VHRLVFTSSAVVFSRSIRTAITEEDPLMDPFEEDYAITKFLAQKEIIAAAKRGMQAVI
                     VNPPRVYGPSSFENNANALNNLVAKYLRQSFYAVPGDGHFIGNYAFINDVIDGHIRAM
                     HNGRAGECYILGGENEDYLGFYRKLEKVTGIKRKCIHVPKWVMDTAAELSETWASLSG
                     KEPGVTHAIVNKIYSQRALSCDKAIRELGYQITPLEEGLSQTVAYVKNKNV"
     gene            1430..>1845
                     /locus_tag="VLL95_06705"
     CDS             1430..>1845
                     /locus_tag="VLL95_06705"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR38588.1"
                     /translation="MREALNTGNAPYAVITGASGGLGKSFATACAERGYNLLMVDVAG
                     SEVKKCCEFLQKNFDTRSMYMEADITTNSSTEDLLAFIRQHDIQVGLLINNAGIPQNE
                     FFASTHPELLRNMVNVNCLGTVNITKALLPELRKQSR"
BASE COUNT          513 a          404 c          496 g          432 t
ORIGIN      
        1 atagctgagt ggctggcaat attggtgatg ctggcaatac tttatgcctt gcaaagacaa
       61 ttattgaaaa ggcggattcc gcagggaatg gaatcattct ccaatgctac catgaaagcg
      121 ccacgcttgt ttgtgtatgc catcgttttc tttgcctacc tgttttgcta tgaagtttat
      181 ttccgcggct acttcctgat gtatgcattg aggggcgagc cattgtattg ggtcatcggg
      241 tacaacagtt tgttgtatgc gctggtacac ctgcacaagg gaaggcaaca aacacttgcc
      301 gccattccgt ttggcatatt gctctgcctg gtcacactgt ggaccggcca catttggttt
      361 gcctggctgg tacatgtgat gcttgaactc ggcattgaag tgcggctgct gtctggcaaa
      421 gcaattactc atcatcaaaa agcaagcgta tgaaagtata tgtaacagga ggtaccggtt
      481 acattggaaa ggacctggta aaaagattgc tggaggatgg cgaagaagtg gtggccatgt
      541 accggagtga aaagccgccc tacgagtggc cgggcctgca atggtcgaaa gccgacctga
      601 acaacattga ggcgatgaaa aaagggatgc agggttgtga aggcgtgtat cacatggcag
      661 ggctggcaag actgtggcat cccgataagg acgccttctt tacaatgaat gtggaaggca
      721 cccgaaatgt aattgcggcg gcagaacaaa gtggtgtgca tcgtttggta tttacttcca
      781 gcgccgttgt attcagccgt tctatccgca ctgccattac cgaagaagat ccattgatgg
      841 atccgtttga agaggattat gccattacaa aattcctggc ccaaaaagaa atcatagccg
      901 cagcaaagcg aggcatgcag gcagtgatcg taaacccgcc aagggtatac ggtcccagta
      961 gctttgagaa caatgccaat gctttgaaca acctggtggc gaagtacctg aggcaatctt
     1021 tttacgcggt acctggagac gggcacttca ttggcaacta tgctttcatc aatgatgtga
     1081 ttgacggaca tatccgggcc atgcacaatg ggcgtgccgg cgaatgctac attcttggag
     1141 gcgagaatga agattatttg gggttttaca ggaagctgga aaaagtgacc ggcataaaac
     1201 gcaaatgcat tcatgtgcca aaatgggtaa tggatactgc cgcagaatta tcggaaacat
     1261 gggcttcgct cagcgggaag gagccgggtg tgacccatgc catcgtaaac aagatttatt
     1321 cgcaacgggc attgagttgc gacaaagcta ttcgcgaatt gggctaccaa atcaccccgc
     1381 tggaagaagg attgtcgcaa acagtagcct acgtcaaaaa caaaaatgta tgagggaagc
     1441 gctaaacacc gggaatgccc cttatgccgt catcaccgga gccagtggcg gactgggcaa
     1501 aagctttgct acagcatgtg ccgaaagagg atacaacctg ctgatggtgg atgtggcagg
     1561 gagtgaagtg aaaaaatgct gcgagttcct gcagaaaaat tttgatacca ggtcaatgta
     1621 catggaagca gatattacca cgaactcgtc tacagaagat ttgctggcct tcatcaggca
     1681 acacgatata caggtagggt tgctcatcaa taatgcaggc attccacaaa acgaattctt
     1741 cgccagcacc caccccgaac ttttacgaaa catggtgaat gtgaattgcc tgggcacagt
     1801 caatattacc aaagcattgt tgccggagct gcgcaagcaa tcccg
//
LOCUS       DATIQF010000405         4525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_82561, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000405 DATIQF010000000
VERSION     DATIQF010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4525
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82561"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..338)
                     /locus_tag="VLL95_06710"
     CDS             complement(<1..338)
                     /locus_tag="VLL95_06710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38589.1"
                     /translation="MTVAMVCPPFRLSSLDIIRAGFNEHIALYLLHLDLYLNTVKYCG
                     VRVFAAILIIVSLAQPGKLNAQSTTGHELRVDFFGDTLSFEADESVRIPFPANALNKE
                     LITDFYHQMD"
     gene            complement(415..2028)
                     /locus_tag="VLL95_06715"
     CDS             complement(415..2028)
                     /locus_tag="VLL95_06715"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HSR38590.1"
                     /translation="MANDNNYFGKWNRRDILKALGGIPLIGGVWYSGASLAESAQREK
                     QFLLETLNIKASPPPATGPMSGKPLRIGIIGFGIRGEQLCRSLGFATTGWLKEMKEAL
                     EKNPKDTRLNDFMAQESLNVKLAAICDVFDERAENALASFNTSDNKIKRFRTHTELIN
                     SKEVDAVIIATPDHWHAPISIEALNAGIHVYVEKPMTHNIAETYALRDAVLNNPQAVF
                     TVGHQHRQTQSFLTAQDIINKNILGHVSLVQTNTNRNDDNGAWQYDIAESASPKTIDW
                     DQFLGNAPKVPFNLEHFFRWRKWWAYGSGLSGDLMTHDYDRINCILKMGIPRTVTASG
                     GIYTHRDGRNVPDVMHINMEFPDFSTGSSQKEGKEKGMTLVYSATLGNQFDRGTVLMG
                     HDASMELGNAITVYADPRSTKYAELIKEERIEPGVPIYQYDPAVSGTDAVTSATAKYF
                     ANKGLLWTYRDGKRVDSTFLHLREWLSCIRNGGTPSCSIKEGFEEAITAHMGGLSYKL
                     GRRIEWDPEAGRIISKPGEDLDAVLLSNT"
     gene            complement(2034..2519)
                     /locus_tag="VLL95_06720"
     CDS             complement(2034..2519)
                     /locus_tag="VLL95_06720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38591.1"
                     /translation="MNVPNLTTVQRYALVILRIFIGWHFLYEGVIKAYNPAWTAKGYL
                     LSASILKPFFTWLASDSMISVIDTLNIAGLIIVGISLMAGIKVKWGCLAGIALLLLYY
                     LAHPPFPGLPQGPSEGSYWIVNKNLVEMAALFVIYLFPLANVFGLEILFSKRNVKTAI
                     N"
     gene            complement(2615..3622)
                     /locus_tag="VLL95_06725"
     CDS             complement(2615..3622)
                     /locus_tag="VLL95_06725"
                     /inference="COORDINATES: protein motif:HMM:NF014477.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0017013 - protein flavinylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HSR38592.1"
                     /translation="MKVAIFCSACLCVLLSCKHEIKNTIRISGKAQGTTYHITYLAGS
                     NANYREEFDSLFRCIDQSLSTYNASSIISKMNSNDTSAVADAFFLTVFEKALEVSGKT
                     NGQFDVTVAPLVNAYGFGFTQREKVSQALIDSLLPLVGYKKVRLADGKLVKDNPKTML
                     DFNAIAQGYTVDVLSSFLDEKGISDYLVELGGELKAKGKRLDGSLWSVGIEQPDENAT
                     DEVALSATLTVKDRALATSGNYKRFYSEGGKKYSHILDPFTGYPAKNNLLSATVVAEN
                     CMTADAYATAFMVMGLEGARQFLEANKDLGLEVLFIYDEQGKWKTYQSEKLHETIEIV
                     K"
     gene            complement(4046..>4525)
                     /locus_tag="VLL95_06730"
     CDS             complement(4046..>4525)
                     /locus_tag="VLL95_06730"
                     /inference="COORDINATES: protein motif:HMM:NF012604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38593.1"
                     /translation="AVLRSVDGLGNVAWQRPCAFRVTGLANGQNQSSTLYQWNKVIFS
                     SSPSHNLGLNYQPLASQFVAPVNGIYHFNVHLKVSGQSYQTGLALNIIRSGNEFTAAS
                     DSKGDNRNDADFTTKTVQVTTDIQLFAGDIVYVLFWGFNGIEHGSGTWFSGHLITQL"
BASE COUNT         1105 a         1100 c         1085 g         1235 t
ORIGIN      
        1 ttgtccattt ggtggtagaa gtcggtgatc agttctttat tcaacgcatt ggcaggaaag
       61 ggaatgcgaa cagattcatc agcttcaaaa gaaagcgtat cgccgaaaaa atcaacccgt
      121 aactcgtggc cagttgttga ctgagcattc agttttcctg gttgtgccag gcttacaata
      181 atcaatatgg ctgcaaacac tctcaccccg caatatttca ctgtattcaa atataaatcc
      241 aaatgcagga ggtaaagtgc gatatgctcg ttaaatcctg cacggatgat atcaagtgaa
      301 ctcaagcgaa acggggggca caccattgcc acagtcaccc gtgggcgttg tgaccgccac
      361 agttgcctgc acgcctttcc atacgcgaaa gcatgtaggc ttctccggtg ttgctcaggt
      421 attcgacagc aacacggcat cgagatcttc gccgggtttg gagataattc ttcctgcttc
      481 cggatcccat tcaattctcc tgccgagttt gtacgaaagc ccacccatat gggcagtaat
      541 ggcttcttca aaaccttctt tgatagaaca actgggtgtg ccaccatttc gtatgcagct
      601 gagccattct ctcaaatgga gaaaggtgga gtctacccgc tttccatccc tgtaggtcca
      661 cagcaaccct ttgttggcaa agtattttgc cgtggcagaa gtaactgcat cggttccact
      721 taccgcaggg tcgtactggt agatcggtac accgggttca atgcgttctt ctttgatgag
      781 ttccgcatat ttggtcgacc gtggatcggc atataccgtg attgcatttc ccagttccat
      841 gctggcatcg tgccccatta aaaccgtacc ccgatcaaac tggttgccca gggtagcgct
      901 gtataccagc gtcatgcctt tttcttttcc ttctttttgg ctgctgccgg tactgaaatc
      961 aggaaactcc atattgatgt gcattacatc gggcacattg cgtccgtcgc ggtgggtgta
     1021 aataccaccg gatgccgtaa ctgtgcgggg gatgcccatt ttgagaatgc aattgatgcg
     1081 gtcgtaatcg tgggtcatta agtcgcctga caatcccgaa ccgtaggccc accatttgcg
     1141 ccaacggaag aagtgttcca ggttgaaagg cactttgggc gcattgccaa ggaactgatc
     1201 ccaatcgatg gttttcggac tggccgattc ggctatgtcg tattgccagg caccgttatc
     1261 atcattgcgg ttggtattgg tttgaaccag cgaaacgtgc ccaaggatgt tcttattgat
     1321 gatatcctgc gctgtcaaaa agctctgcgt ttgccgatgc tggtgaccca ccgtgaatac
     1381 cgcctgcggg ttattcaaca ccgcgtcacg caaggcatag gtttcagcga tattatgtgt
     1441 catgggtttt tcaacataca catgaatccc tgcgttgagt gcttcaatgg agatgggtgc
     1501 atgccaatgg tcgggagtgg caataataac cgcgtctact tctttgctgt tgatgagttc
     1561 ggtatgtgtc cgaaatctct tgatcttgtt atcgctggtg ttgaaagaag ccaatgcatt
     1621 ttcagcccgc tcatcgaata catcgcaaat ggctgccagt ttcacgttca ggctttcctg
     1681 cgccatgaaa tcattcagcc ttgtatcctt tggatttttc tccagcgctt ccttcatttc
     1741 ttttagccat ccggtggtgg caaagcccaa tgacctgcac agttgttcgc cacgtatgcc
     1801 aaaaccaatg atgccaatgc gcaacggctt accgctcatg gggccggtcg caggaggtgg
     1861 tgaggctttg atgttcaaag tttccagcag gaattgtttt tcccgttggg ccgattcagc
     1921 caatgaagcg cctgaatacc acacgccacc aatcaaagga atgccgccca gcgctttcag
     1981 gatgtcgcgc cgattccatt taccgaaata gttgttatcg tttgccatgg tgattagttt
     2041 attgccgttt tcacgttgcg ttttgaaaaa aggatttcaa ggccgaaaac attggccagg
     2101 ggaaacaggt agatcacaaa aagcgccgcc atttccacca ggttcttgtt cactatccaa
     2161 taactgcctt cgctagggcc ttgcggcaat cctggaaaag gaggatgcgc caggtaatag
     2221 agcaacagca gggcgattcc tgccaggcag ccccacttca ctttaatacc agccataagg
     2281 ctgatgccca caatgatcag gccggctatg ttcaaagtgt caatcactga aatcattgaa
     2341 tcgctggcca gccatgtaaa aaatggcttt aggatagagg cgctgagcaa atatcccttg
     2401 gcggtccagg ctgggttata ggcttttata acgccttcgt acaggaaatg ccaaccgata
     2461 aaaatccgga ggatcaccag tgcatagcgt tgcaccgttg taagatttgg aacgttcata
     2521 atcgctgttt tatggttcat agaatgtttt cttatcatcc gctcagtttg agctttctat
     2581 tcacgttgtt ctaccgcaga atccgttgaa aagctcactt cactatttcg attgtttcgt
     2641 gaagcttttc cgattggtaa gttttccatt taccctgctc atcataaatg aaaagcactt
     2701 caagtcccag gtctttgttg gcctccagga attgccgggc gccttccaat cccatcacca
     2761 tgaatgcagt agcgtaggca tcggcggtca tgcagttttc agccactacg gtggcactca
     2821 gcaaattgtt tttcgccggg taaccagtaa atggatccag gatatgcgag tatttttttc
     2881 ctccttccga gtaaaatctt ttgtagttgc cggaggtggc caatgcccgg tctttcactg
     2941 taagtgtagc acttagcgct acttcgtcag tggcattttc atcaggctgc tcaatgccca
     3001 ccgaccaaag gctgccgtcc aaccgtttcc ctttggcctt cagttctccc cccagttcta
     3061 ccaggtaatc gctaatgcct ttctcgtcca aaaacgaaga caagacatct actgtatacc
     3121 cttgggcgat ggcattgaaa tcgagcatgg tcttcggatt gtctttaacc agtttcccat
     3181 ctgccagcct cactttttta tacccgacaa gtggcagcaa actgtcgatc aaagcctggc
     3241 tgactttttc ccgctgggta aagccaaagc cataagcgtt taccagggga gctacggtca
     3301 catcaaactg gccattggtt ttgcctgata cctccaaggc cttttcaaat acggttaaaa
     3361 aaaaagcatc ggctaccgca ctggtatcgt tgctgttcat tttggaaatg atggaggatg
     3421 cgttataagt ggagagcgac tgatcgatgc agcggaacag ggagtcgaat tcttcccggt
     3481 agtttgcatt cgagcccgcc aggtaagtga tatgataagt ggtgccttgc gcttttcctg
     3541 aaatcctgat cgtattcttt atttcgtgct tgcacgagag cagcacgcaa aggcaagccg
     3601 aacagaaaat cgcaactttc atattcgttt ctgaaatcgt ttcgaataat cgggtcaatc
     3661 gccttgctgg cttgccattc aaatcgtcat cgtttagagg aagcgagaac gatttgcggt
     3721 gctgccgcag gcatggaaat ccccaatttc caaaagtatc agccgccatt tattttgcac
     3781 atgactaccg acaggttttt gacaggcgca agccagtgaa tgaagcggcc cgtggagggc
     3841 gcacttatcc attcgtcggc tagcactctt cccggtcaat tgcttgcaat ggtttccggc
     3901 aaagagccaa atggagatgc tgtttccaag cttgggaaag ccattggaca aacaggccct
     3961 taacacgaca aaagcactgc cttttgcgca gtgcttagcc gggtttaaga atgaggttga
     4021 tgaagtgaat gaatgatgtg ggttgtcaga gttgtgtgat aagatgtccg ctgaaccagg
     4081 taccagagcc atgttcaatg ccgttaaatc cccagaacaa aacatatacg atgtcgcctg
     4141 caaaaagttg gatatcggtg gttacttgca ctgttttggt agtgaaatcg gcatcattcc
     4201 gattatcgcc tttgctgtcg gaagctgcgg tgaactcgtt accagaccta atgatgttta
     4261 gtgcaagtcc agtttgataa ctctgcccgg aaactttcag atgtacattg aaatgataaa
     4321 tgccattgac cggggcgaca aattgagatg caagcggttg ataattcaat cccaggttgt
     4381 gtgaaggaga ggaagaaaat attactttat tccattggta aagagtagag gattggtttt
     4441 gtccattggc caggccggtg actctaaaag cacatggcct ttgccaagcg acatttccga
     4501 gcccatccac gcttctcaac acagc
//
LOCUS       DATIQF010000406         3262 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_128316,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000406 DATIQF010000000
VERSION     DATIQF010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3262
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128316"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            87..410
                     /locus_tag="VLL95_06735"
     CDS             87..410
                     /locus_tag="VLL95_06735"
                     /inference="COORDINATES: protein motif:HMM:NF021126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhO family protein"
                     /protein_id="HSR38594.1"
                     /translation="MEKYNNDDITYSVNAPKPQFAVLSEVYYSRGWNAYADGKLVPIV
                     KTDYVLRGVALPAGTKKLELKFEPQSYKMGSTITTLTSGIILLLLALGVFFEFFRKKK
                     TEEAA"
     gene            complement(647..1654)
                     /locus_tag="VLL95_06740"
     CDS             complement(647..1654)
                     /locus_tag="VLL95_06740"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSR38595.1"
                     /translation="MSPQLSIIIVNYHSEAFLQDCLQSVFDHTSGIDYEVVVVDNSAA
                     TGRCATLLHRFNNVQYIAMPGNEGFARANNAGIKASNAELLLLLNSDTIVMGNAIGEC
                     CVRLSQSIQHVAAGVQLVFPDGSQQISGSNNMPGGLNYLMTIPYVGYLLRMLAKGVGV
                     QKPGVENVQARLVDVDWINGAFLMVKRYAIEQEGMLEEDFFLYHEKSEWCGRLQRAGK
                     LCVYGDLEVVHLEGGSANAAFQSQTKAYSHLSDKKGFQLMVSMLLRMRKQFGAGWYLF
                     HLLAHTLCLPIVFFFALLASFLNKGKALTDAFGYAGNVLKCWVLLPNMFFNKPYFYKV
                     L"
     gene            complement(1670..2596)
                     /locus_tag="VLL95_06745"
     CDS             complement(1670..2596)
                     /locus_tag="VLL95_06745"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HSR38596.1"
                     /translation="MQQPLISIVLPTYNGSKYLATSVQSCIDQTWQNWELIIINDCST
                     DNTLAIAESFVARDSRIRVISNEKNLKLPMSLNRGFSEARGELFTWTSDDNYYAPQAL
                     ETLANALLQQADAALVYADETLIDDDGNNTGTWVMGDVNQSVTAWKGCGGCFLYKRDV
                     QTLLKGYDPSMFMIEDYDFFLRGFVQCKYVYLHRADLYFYRFHQASLTGRYMPYVSDL
                     QKLVIEKQLDALEPKINQQDFALLLRKLAVYYMTHKAHAGKFQLYMGHLRKASMAQWL
                     ITLVYVPVQGLLNFGKQLWASFKVLLTQLWKA"
     gene            complement(2596..>3262)
                     /gene="wecB"
                     /locus_tag="VLL95_06750"
     CDS             complement(2596..>3262)
                     /gene="wecB"
                     /locus_tag="VLL95_06750"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HSR38597.1"
                     /translation="PTQRAVDNLDHKDILGQVFLTGNTVIDALLMGLEKVKDDAALAS
                     RFSFVDPALRMILVTGHRRESFGQPFEEICLALRTLADKYPDVQIVYPVHLNPNVREP
                     VYRWLEGHPRIHLIEPVDYPAMIWLMHASYIVLTDSGGVQEEAPTLGKPVLVMREVTE
                     RTEGIDAGTAKLVGTNSEVIIREASQLLDNQEAYHKMANAVNPYGDGTTSQQILKILK
                     ENL"
BASE COUNT          839 a          842 c          780 g          801 t
ORIGIN      
        1 gcctgtacga cacggctatt gttcagaaga gcttccaaac aggcattgca gcggcaccac
       61 aataggacag cactgcttac atcaggttgg agaaatacaa caatgacgac atcacctata
      121 gtgtgaatgc tcccaagccg cagtttgccg tgttgagcga agtgtactac agccgcggct
      181 ggaacgctta tgcagatggc aagttggtgc cgattgtaaa aaccgattat gtactgcgtg
      241 gcgtggcgct tcctgccggc accaaaaaac tggaactgaa atttgagccg cagagctata
      301 agatgggctc caccatcacc accctcactt caggaatcat cctgttgctg ctggccctgg
      361 gagtgttctt cgagttcttc agaaagaaga aaacggaaga ggctgcctga aaaaaataat
      421 ggacccctca attgaaaacg gcttgcaaca gcaggccgtt tttttatgcc aacttctatt
      481 ggacactaat gtcgatgcca aatttgatat gatctgaaat gaaccacagc gtcacttttc
      541 ggcacaacgg atcacggcgc tgtgattctc tgtgtcctcg tgtcgttgtg gttcaactgg
      601 tcaagtactg ttaaaatgga aacgaaggtg cctgttgaga tgagtgctac aacactttgt
      661 agaaatacgg tttgttgaaa aacatattgg gcaacaaaac ccagcatttc agcacattcc
      721 ccgcgtatcc aaaagcatca gtcagcgcct tgcccttgtt cagaaacgaa gccagcaagg
      781 caaagaagaa tacaatgggc aaacaaagcg tgtgtgccaa taaatgaaag aggtaccagc
      841 ctgccccgaa ctgtttccgc atgcgcaaca acatggacac catgagttgg aaaccctttt
      901 tatcagacaa atggctgtag gctttcgttt gcgactgaaa ggcggcattg gccgacccac
      961 cttctaaatg caccacttcc aaatcgccat acacacacaa cttgccggca cgttgcaggc
     1021 ggccacacca ttcacttttt tcgtggtaca aaaagaagtc ttcttcaagc attccttctt
     1081 gctcaatggc atagcgcttc accatcagga aagcgccgtt gatccagtcg acatcaacca
     1141 gcctggcctg tacattttcg acacccggtt tttgtacgcc cacgcccttt gccagcatgc
     1201 gcaacaagta gcccacataa ggaatggtca tcaggtaatt caagccaccg ggcatgttgt
     1261 tactgccgga gatctgctgg ctgccatccg gaaaaaccaa ctgcacgccg gctgccacgt
     1321 gttgaatgga ttggctcaac cgcacacaac attcaccaat ggcattaccc attacaatgg
     1381 tatcagaatt caataacagc agcaattcag cgttgctcgc cttgatgcct gcattgttgg
     1441 cacgggcaaa tccttcgttg ccgggcatgg cgatgtattg aacattgttg aagcgatgta
     1501 acagtgtggc gcatctacct gtagcagcac tattgtccac taccaccacc tcatagtcga
     1561 tacctgaagt atgatcaaat actgactgca ggcagtcctg caggaatgct tcggaatgat
     1621 agttgactat aatgatggat agctggggag acataataca gcattaaagc tacgccttcc
     1681 acagttgggt cagcaaaact ttgaaagatg cccacaactg cttgccaaaa ttcaaaagtc
     1741 cttgtacagg cacgtacaca agcgtgatca gccattgcgc catcgaagct tttcgaaggt
     1801 gtcccatgta cagttgaaac ttgccggcat gggctttgtg cgtcatgtaa tacactgcca
     1861 gcttgcgaag cagcaaggca aaatcctgtt ggttgatttt aggttccaga gcatccagtt
     1921 gcttttctat caccagcttt tgcagatccg acacgtaggg catgtaccgg ccggtaagcg
     1981 atgcctggtg gaagcgatag aaatagagat cagcccggtg gagataaacg tatttgcatt
     2041 ggacaaaacc ccgcaggaaa aaatcataat cctcgatcat gaacatggaa ggatcatacc
     2101 ccttcaacaa tgtttgcacg tctcttttgt acaaaaagca cccaccgcat cccttccagg
     2161 cagtgactga ttggttaacg tcgcccatca cccaggtgcc ggtattgttg ccatcatcat
     2221 caatcagtgt ttcatcggca tacaccagcg cagcgtctgc ttgttgcagc agagcattgg
     2281 ccaatgtttc cagggcttgt ggcgcataat agttgtcgtc tgaagtccag gtaaacaact
     2341 cccctctcgc ttcgctgaag cccctgttga gcgacatggg cagcttcagg ttcttttcat
     2401 tgctgatcac ccgtatgcgg ctgtcccttg ccacgaaact ttctgcaatg gccagcgtgt
     2461 tatcggtgga gcaatcgttg atgatgatga gctcccagtt ttgccaggtc tggtcgatgc
     2521 aactctgcac cgaagtagcc aggtatttcg agccattgta ggtgggcaaa acaatactaa
     2581 tgagcggctg ttgcatcaaa gattttcttt caggattttc aggatttgtt gggaggtggt
     2641 accatcaccg taaggattca cggcattcgc cattttgtgg tacgcttcct ggttgtccag
     2701 cagttgcgat gcttcccgaa tgatgacttc gctgttggtg cctaccagtt tggcggtgcc
     2761 ggcatcaatg ccttccgtcc gttccgtcac ttcacgcatt accagtacgg gcttgcccag
     2821 tgtgggtgcc tcttcctgca cgccacccga atcggtgagc acgatgtagg aagcatgcat
     2881 cagccaaatc atggcaggat aatccaccgg ttcgattaag tgaatgcgtg gatgcccttc
     2941 caaccatcta tatacaggct cccttacatt ggggttcagg tgcaccgggt atacaatttg
     3001 cacatccggg tacttgtcgg ccagtgtgcg caaggccagg cagatttctt caaacggctg
     3061 cccgaaactt tcgcgtcgat ggccggtgac gagtatcatg cgcaaggcag gatcgacaaa
     3121 tgaaaaccgc gaagccaatg ccgcatcgtc tttcactttt tcaagcccca tcagtaaggc
     3181 atcaatcacg gtattgccag taagaaacac ctgccctaaa atatctttat gatccaggtt
     3241 gtccacggcc cgctgggtgg gt
//
LOCUS       DATIQF010000407         1658 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_173728,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000407 DATIQF010000000
VERSION     DATIQF010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173728"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1125
                     /locus_tag="VLL95_06755"
     CDS             <1..1125
                     /locus_tag="VLL95_06755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38598.1"
                     /translation="SSKLSLFQDITVVPYHSTQECLRQGGPVLQLATQLGATYYLTGS
                     FHYEEGVFHVSCQLFDASSHALLCSQDFMEATHGQQGSALTEKIVDQIVSALAGYSGY
                     IHYRKFLANTRQEPLSNSMANAIYWFYRYYVQHSEEVFQEAIRQLEKANREDPSCSLG
                     WGILAHLYADGVFYHYTTVPDPVQKAQEYLHKAFALNPNSQEAYLTQAWVHVLNRKPN
                     DALACMEKVLAINPYSVHYISQVSLGMAMLGEYDRSIKLWERAIQMQKLPYWWLNIPR
                     HFVALRNGDYSQALYYARRPGTPKMIYEGVLEMIALFLMKEDDQLGLLARNYRQRFPG
                     QFAFVCQALPCIIFDEKLHALVADALNQIRALHFADEKAS"
BASE COUNT          394 a          420 c          405 g          439 t
ORIGIN      
        1 agcagcaagt tgagcttgtt ccaggatatc actgtggtac cttatcacag cacgcaggaa
       61 tgcctgcgcc agggaggccc tgttctgcag ttggccacgc aactgggtgc tacttactat
      121 ctcacgggca gttttcatta tgaagaaggg gtattccatg tttcctgcca gctgtttgac
      181 gcctccagcc atgcattgct atgctcgcag gacttcatgg aagctaccca tgggcaacag
      241 ggctcggctt tgacagaaaa aattgttgac cagattgtat cggccctcgc gggttacagt
      301 ggctatatcc attatcgaaa attccttgcc aatacccgcc aggaaccact gagcaacagc
      361 atggccaatg ccatttactg gttttaccgg tattatgtgc agcattcgga ggaagtattc
      421 caggaagcga ttcgccagtt ggaaaaggct aaccgtgaag acccctcctg ctctctcggc
      481 tggggcatcc tggctcattt gtatgctgat ggagtattct atcattacac cacggttccc
      541 gatcccgttc aaaaagcaca ggagtatctc cacaaagctt ttgctctcaa ccccaattcg
      601 caggaggcct accttaccca ggcatgggtt catgttttga acaggaagcc aaacgatgcc
      661 cttgcctgca tggaaaaggt gctggccatc aatccataca gtgtgcatta catttcgcag
      721 gtttcgctgg gtatggcgat gctgggagaa tacgaccgga gcataaaact gtgggaacgt
      781 gccatccaga tgcagaaact tccttactgg tggttgaata tacccaggca cttcgtggca
      841 ctccgcaatg gcgattattc ccaggcctta tactacgccc ggaggcccgg cacgcccaag
      901 atgatctatg agggtgtgct ggaaatgatt gcccttttcc ttatgaagga agatgaccaa
      961 ctgggtctgc ttgcccgtaa ttacaggcag cgattccccg ggcagtttgc ctttgtttgc
     1021 caggcgctgc cctgcatcat ttttgatgaa aagctgcatg cgctggtggc tgatgcactt
     1081 aatcagatcc gggctttaca ctttgccgac gaaaaggcgt cttaatcatc tctaaccatt
     1141 tacgcctgaa agtttgcttc acttgaggcc agccgttact tgttttcaac tcgtgcaagg
     1201 ccgtttttgt aggttgcctg ctcgggagcc tgaagaccaa aagcatcagc ctccattccg
     1261 gtccaataaa tgttggtcca tttaacggtt aaatacccct ttaactgtcg gtccagctct
     1321 tctgtaaacc tcgtggcaga aggcttttgc gagatagcgt gttcgcataa aaaagcctta
     1381 tgattttact cattcttttg cgttacctga aattgtaacg ttgtaggagt ctgagttatc
     1441 tgccgagaga gacaggagaa gcccatgttg ttgccccatg cctatgagat cattttttga
     1501 ggatggaact gctttcgagc cgcaatgtgt tttaacagta cgattccctg aagcggcagt
     1561 cgtacggggc gcacctctca aacttgtcac ccaatggatc gaacaaaaca gaccaccaga
     1621 aaagggactc ctggtattac atgctgaagg cttccttt
//
LOCUS       DATIQF010000408         2810 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_52312, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000408 DATIQF010000000
VERSION     DATIQF010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2810
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52312"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..426)
                     /locus_tag="VLL95_06760"
     CDS             complement(<1..426)
                     /locus_tag="VLL95_06760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38599.1"
                     /translation="MSALKNEFQTVRLPDIALADMYRQHLVIVEPVAARRQPAAPAPA
                     PPKPEPLPEPLPETAVVAPPPQPQPQPTRSQPQPQSQPSAHYPVLGHFSRQVLVMVHD
                     EAAVHCNDTSLAFLTKVISAVGLSMEHIAILNTHGKQVTY"
     gene            483..1547
                     /locus_tag="VLL95_06765"
     CDS             483..1547
                     /locus_tag="VLL95_06765"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: protein motif:HMM:NF009897.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HSR38600.1"
                     /translation="MIATAEMKITKTNQSKLSDVQLENIPFGKVFTDHMFIAEYENGE
                     WGQPEIKPYQPLQIDPSNAAWHYGQAIFEGIKAYPLPGGEVAIFRPLDNFHRFNRSAH
                     RMQMPEVPEELFIEGMRQLIALDKDWVPHFPNHALYIRPFMIASDNAIGVRPSSKYLF
                     MIICSPTGPYYTAPMRLYVEETYVRAVKGGVGYAKAAGNYAGAMYPTELAKQKGYDQV
                     LWTDAFEHKYVQEAGVMNVLFVVGNKLLTPSLEEGTILAGVTRDSVLTVAREMGLEVE
                     ERPISIDELIEAYKAGDLKEVFGAGTAATISQIKELRYKETDMFFDPSKGEVAKEILR
                     RLNDIRYGQVADSHGWLLKV"
     gene            complement(1618..2583)
                     /locus_tag="VLL95_06770"
     CDS             complement(1618..2583)
                     /locus_tag="VLL95_06770"
                     /EC_number="2.5.1.115"
                     /inference="COORDINATES: protein motif:HMM:NF009525.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homogentisate phytyltransferase"
                     /protein_id="HSR38601.1"
                     /translation="MAQTGDLERTSHLITNTLKAWWAFSRPHTIIGSFFSITSLFLIA
                     AALYGSQSSQPVWDVVDHYTWQYLITLLSALACNLFIVGLNQWQDLEVDRINKPWLPL
                     AAGSISLRQAKLAVWSSLLLSLVTSSLLGWWFFLLILLINLIGAAYSLPPLKLKRHHL
                     PAAFAIVLVRGLLVNLGMSAHFMQQMGQPATIPEAVWPLALFIVGFSFGIAWFKDIPD
                     TEGDEKFHFKTLAVSMNRQTALWLGVAVVGLSYVAVSASPFVLLMPVQTAFFSLSHLA
                     LGLLFIYRSARLNLDNPSAVKQFYMFFWLLFFVEYIIYPLSFLIA"
BASE COUNT          727 a          668 c          817 g          598 t
ORIGIN      
        1 ataagtcacc tgtttgccat gcgtattgag gatggcgatg tgttccatgc tcagccccac
       61 ggcactgatc accttggtaa ggaaggcgag ggaggtatcg ttgcaatgca cggcggcctc
      121 atcgtgtacc attaccagca cctggcggct gaaatggccc aatacggggt aatgagcgga
      181 aggttgagat tgaggctgag gttgagaacg agtaggttga ggttgaggct gaggtggagg
      241 ggcgaccact gcggtttcgg gtaatggctc aggcaaaggc tctggcttgg ggggcgcagg
      301 ggcaggcgcc gcaggttgcc ggcgggcggc tacgggctct actattacca aatgttggcg
      361 gtacatatca gccagcgcta tatcgggcag tcttactgtt tgaaattcat tctttaacgc
      421 actcatgacc tttgggtggc aggctttttg tttctttgcg gcaaattaac accaaccata
      481 gaatgattgc gactgccgaa atgaagatca ccaaaaccaa ccaaagcaaa cttagcgatg
      541 tgcagttgga aaatatccct tttggaaagg tatttaccga ccacatgttc attgccgaat
      601 acgaaaatgg cgagtggggc cagccggaga tcaagcccta ccagccgttg cagatagatc
      661 ccagcaatgc ggcctggcat tatgggcagg ccatttttga aggcatcaaa gcctatccgc
      721 tgccgggtgg cgaggtagca attttccgtc cgcttgacaa ctttcaccgt ttcaaccgct
      781 cggcgcaccg catgcaaatg cccgaggtac cggaggaatt gttcatcgaa ggcatgcgcc
      841 agctcattgc cctcgacaag gactgggtgc cccattttcc caaccatgct ttgtacatcc
      901 gcccgttcat gatcgcctcc gacaatgcca ttggtgtgag gccttcttcc aaatatttgt
      961 tcatgatcat ttgcagcccc accggtccgt attacacggc gcctatgcgg ttgtacgtgg
     1021 aagaaaccta tgtaagggcg gtgaaagggg gtgtgggtta tgccaaggcg gcgggcaact
     1081 atgccggcgc catgtaccct accgaactgg ccaaacaaaa aggctacgac caggtgttgt
     1141 ggaccgatgc gtttgaacac aaatatgtgc aggaagccgg cgtgatgaac gtgttgtttg
     1201 tagtgggcaa caagctgctg acgccaagcc tcgaagaagg cacgatactg gccggcgtta
     1261 cccgcgacag tgtgctgacc gtggcccgcg aaatgggact ggaagtggaa gaacgcccca
     1321 tcagcataga tgaattgata gaagcgtata aggccggaga cctgaaagaa gtatttgggg
     1381 ccggtacagc ggctaccatc agccaaatca aagagttgcg ctacaaggaa acggatatgt
     1441 tctttgatcc cagcaaaggg gaggtggcca aagaaatttt gcgtcgcctc aatgatatcc
     1501 gctatggaca ggtggccgat tcacatggct ggctgttgaa ggtgtagaaa caggaatcat
     1561 ttacatatag aaaaggctgc ttcgcaaaga agtggccttt cttttttaac cctgccatca
     1621 ggcaattaag aaggagaggg gatagataat gtattcaaca aaaaacagga gccagaagaa
     1681 catatagaac tgcttgacgg cgctggggtt gtccaggttg agccgggcgc ttctgtaaat
     1741 gaagagcagc cccaatgcga ggtgcgacaa cgagaagaaa gcggtttgca ccggcatgag
     1801 taaaacaaac gggctggcgc ttacagccac atacgaaaga cctaccacgg ccacgcccag
     1861 ccacaatgcc gtttggcggt tcatgctgac ggccagggtt ttgaaatgga atttttcatc
     1921 gccttcggta tcgggtatgt ctttgaacca ggcgatgcca aagctgaatc caacgatgaa
     1981 cagcgccagc ggccaaaccg cttcaggtat ggtggcgggt tgccccattt gctgcatgaa
     2041 gtgtgccgac atgccgagat tcaccaacag gccccgcact agcacaatcg caaaagcggc
     2101 tggtaaatga tggcgcttga gtttgagggg tggaagggag taagccgcac cgatcaggtt
     2161 gatgagcaaa atgagtaaaa agaaccacca gcccagtaac gaggacgtga ccagtgacag
     2221 cagcaagctg ctccacacgg ccagttttgc ctggcgcagg ctgatgctgc cggcggccag
     2281 cggcagccag ggtttgttga tgcggtccac ttccaggtcc tgccattggt tgaggccaac
     2341 aatgaagagg ttgcaagcca atgcgctgag gagggtaata aggtattgcc aggtgtaatg
     2401 atccaccaca tcccaaaccg gctggctgct ttgcgaccca taaagggcag cagcgatcag
     2461 gaacaaggac gtgatgctga aaaatgaacc gatgatggta tgcggacggc tgaaggccca
     2521 ccaggctttg agcgtattgg taatgagatg gcttgtccgc tcaagatcgc cagtttgcgc
     2581 caccagggac cggcttgttc aaattgaatt ttaaaataac gtgtttgatg ttcggcaatg
     2641 atggtcttga accgatggtt ggggatggca tgccataccg acatccagcc atcccaggta
     2701 actgttatga ggttgatggg aatgagatag gtgaacaaca atcttttcca tgagaaaggc
     2761 gaaacaaaag gtgccaacag cagctgtacc aatacgccgg caatggtcac
//
LOCUS       DATIQF010000409         2666 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_82651, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000409 DATIQF010000000
VERSION     DATIQF010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2666
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82651"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(229..1044)
                     /locus_tag="VLL95_06775"
     CDS             complement(229..1044)
                     /locus_tag="VLL95_06775"
                     /inference="COORDINATES: protein motif:HMM:NF012604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38602.1"
                     /translation="MAGLTVFDVTLGSLMVNSGTKWEPGGISLPYTGTLFTNSTIPIF
                     KVLSSGTNAYSIMGETATNGIGVYGKTSTGTGILGYAESGTAGYFQSGLSTGTALSII
                     GKMNSNGSTGTNGSVLSINTSGNPTWQEPVAFAVNDLGAADLSVLHNTDTKFVFAAEE
                     YDLGGDFNLATSEFTAPAKGVYHFDAFAYWNGHTNGTGYVAISIMKNGALYATTREPA
                     IINEGVSNNIGINVLLNVGDKITCQGYQNSGVAQSIFQDGRTVKFSGYLVAKQ"
     gene            complement(1744..>2666)
                     /locus_tag="VLL95_06780"
     CDS             complement(1744..>2666)
                     /locus_tag="VLL95_06780"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="vanadium-dependent haloperoxidase"
                     /protein_id="HSR38603.1"
                     /translation="LDKEVYDNSVAFGKKVGEQVWLRAKDDNYLKSRSKPKYLGSEEP
                     GKWRPTPPDYLDGVEFCWNEIHALVLDSASQFLPPPPPPYTMDSNSTFYNMVKEVYTV
                     SNNLTPEQLEIARFWDDNPFVIEHAGHLTFGTKKITPGGHWMGIAAIAARQTGAGVVK
                     TALTYALTSASLLDAFISSWDAKYKWSYVRPITVIHEYWQKDWKPLLQTPPFPEYTSG
                     HSTITAAAATVLTHLYGDNFAFNDTSDLRYIGMQRKFTSFYQAADECSVSRLYGGIHY
                     RLSTDEGARAGRKVGELVVNRLGRKVGPQP"
BASE COUNT          663 a          693 c          630 g          680 t
ORIGIN      
        1 ctgtccattt cgtcccagcc gtgttgctgc cccgcaatcc acggcgaaga cctggtgttt
       61 ttcttatctg cgaaaatcag cggcatctgc gggaaacccg ttgccatgga ccatgtcaca
      121 cgaaccattt ccatcacagc cgtgtctcat tagaaagaca ctgccatgac atgaaaatca
      181 cagatgccat gaactattgg tgagaacacc aacagcggcg taaaaagatt actgctttgc
      241 caccaggtaa ccggaaaact tcactgtgcg cccgtcctga aaaatgctct gcgccacgcc
      301 agagttttga taaccctggc aggtaatttt atctcctaca ttcagcaata cattaatacc
      361 aatgttattg gaaacccctt cattaattat agcgggttct cgtgtagtgg cataaagcgc
      421 accgttcttc atgatcgaaa tcgccacgta gccggttcca ttggtatgcc cattccaata
      481 ggcaaaagcg tcaaagtgat aaacaccttt tgcaggtgcc gtaaactctg aggttgccag
      541 gttaaagtcg ccacccaaat catactcttc agcggcaaac acaaacttgg tatccgtatt
      601 atgcagcaca gacaggtctg cagcacccag atcgttcact gcaaaggcaa cgggctcttg
      661 ccaggtggga ttgccagaag tattgatgga caaaactgaa ccattggttc cagttgaacc
      721 attactgttc attttgccaa ttatggaaag tgcagtacct gtactaagtc ctgattgaaa
      781 atacccggcc gtaccagact ccgcataccc aagaatacct gtcccagtgc tggttttccc
      841 gtacacacct ataccattgg ttgctgtttc gcccataata ctgtacgcat tggtgcctga
      901 tgataagacc ttaaaaatgg gaatggtact gttggtaaac agcgtaccgg tgtaaggcaa
      961 actaatgcca ccaggctccc acttcgttcc ggaattgacc atgagcgagc ccagcgttac
     1021 atcgaaaaca gtaagccctg ccatgtttgg caataaattt cgttgagcgg tagtcatcct
     1081 tgggaaaagg acaccttttg tagtgctttt tatatccagt atggcactgg catccggcag
     1141 actgccatcc tcattaatgg caacttgtcc taaccctttt gaataacaaa aggctaaaat
     1201 gataaatgtt ctgaaaagaa aaaacagcga tcgtttcatt ttgggtttat ttaattgtta
     1261 ttgatacacc agggttattc atcctccgac ttgcccagcc atactatgac cttcggattg
     1321 catgcgtcag gaacaggcgt cattgccagt tactgttgca tgccagtcca attccaaata
     1381 agctttatcg ccttttgttt tgaaggtatt gacctgaatt ttctccgcaa ctatagtttg
     1441 cataaaagga cttcatacat tcaagggatt ccgatagtac aaataaagct tctaaaaata
     1501 gtttcgctat tcgacatttg caatcggtgt ccctctaagg ctggtgccgc ctgcaggcag
     1561 ggtgccacac gcaataagga acacaagtaa aagaaactgt tggtgaaaac accaacagcg
     1621 gcctttgatg attattctta tccgcgtaga tctgcgcaaa aaaatccgtg ggatctgcgg
     1681 gaaacctaac cgcgtaaacc cgcgcctctg gccgtgtcct ccgcgtccca tccccctatc
     1741 gcattaaggt tgaggcccca cctttcgacc cagccggttc accaccagtt cgcccacctt
     1801 gcggcctgca cgggcgcctt cgtcggtgct gaggcggtaa tggatgccac catatagcct
     1861 gctcaccgag cattcatcag ccgcctggta aaacgaagtg aattttcgct gcatgccaat
     1921 gtagcggagg tcgctggtat cgttgaaggc aaaattgtcg ccatacaaat gcgtaagcac
     1981 cgtggcggcg gccgccgtga tggtgctgtg cccgctggtg tattccggga aaggcggagt
     2041 ttgcagcaag ggcttccagt ctttctgcca gtattcatgg atcacggtga tgggccgcac
     2101 atagctccac ttgtacttgg catcccatga tgaaatgaag gcatcgagca gggaggcgga
     2161 agtcagcgca taggtcagcg ctgtttttac cacaccggcc cctgtttgcc gggcggcaat
     2221 ggccgcaatg cccatccagt ggccgccggg tgtgattttc ttggtgccaa aagtgaggtg
     2281 accggcgtgt tcaatcacaa aaggattgtc gtcccagaag cgggcaattt cgagttgctc
     2341 cggtgtcagg ttgttcgata cggtatacac ttcctttacc atattgtaga aagtgctgtt
     2401 gctatccatg gtataaggcg gtggaggcgg tggcaaaaac tgcgaggccg aatccagcac
     2461 cagggcgtgg atctcattcc agcaaaattc taccccatcg agataatcag gtggcgtggg
     2521 tcgccacttg cccggctctt cgctgcccag gtatttgggc ttgctccggc ttttgaggta
     2581 gttgtcgtcc ttggcccgca gccacacctg ctctcccact ttttttccaa aggctacaga
     2641 gttgtcatac acttctttgt ccagct
//
LOCUS       DATIQF010000410         6311 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_265313,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000410 DATIQF010000000
VERSION     DATIQF010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6311
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265313"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..884
                     /locus_tag="VLL95_06785"
     CDS             <1..884
                     /locus_tag="VLL95_06785"
                     /EC_number="4.1.99.1"
                     /inference="COORDINATES: protein motif:HMM:NF009709.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tryptophanase"
                     /protein_id="HSR38604.1"
                     /translation="EKLVKKYGAKRIPYVSIATSVNMAGGQPISMKNLKELRSFTRKH
                     GIRIIHDMTRVAENAFFIQRREKGYDKKSIASIVKEICSYTDGATMSAKKDALVNIGG
                     FLAINDWDVFEEARNMVVVYEGLHTYGGLAGRDMEAMAIGIGESVDDEHIKARVGQVI
                     YLGEKMYNFGIPIVHPIGGHGIFVDAKKFLPHIPQDQFPSQTLAAEVYLDSGVRTMER
                     GVVSAGRKANGENYFPKLELVRFTIPRRVYTQSHMDVIAESIARVFERRNKIRGLKMV
                     YEPKYLRFFQARFEPLK"
     gene            complement(903..1862)
                     /locus_tag="VLL95_06790"
     CDS             complement(903..1862)
                     /locus_tag="VLL95_06790"
                     /inference="COORDINATES: protein motif:HMM:NF014663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HSR38605.1"
                     /translation="MSMIVEKAGLLDTIQDGGRHHWAHLGISTNGPMDWYAHELANAL
                     VGNRLDAPVVEMHFPASTLRFTKAAIISITGADWEIFINGRSVVFNRTLIVQPNDRLL
                     IGKKYKGERACLAIHGKWKISNDLGSASTDLKSKLGGMGGRKLMAGDQIFFEPHNTVV
                     NPASTNFKWYAEALSASDSIRALPGPEWHWLSEESKSRILSQPFLLKPNSDRMALNWE
                     APALQCTNADKMVSSAVTFGTIQLLPNGNIVTLMADHQTVGGYPRILQVIRADLPKLA
                     QLSPGSLVHFQLTDMATASAHLAKMKSHLQQVASAVRLQMAFG"
     gene            complement(1859..2563)
                     /gene="pxpB"
                     /locus_tag="VLL95_06795"
     CDS             complement(1859..2563)
                     /gene="pxpB"
                     /locus_tag="VLL95_06795"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing)
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HSR38606.1"
                     /translation="MSYPALFRMHETAWLIQWLPGINAGTNEQVHASAKWLRLHSLPG
                     LLQILPAYDSLYVEFDSTGILQNPSTWSTQVETWLQECLATGPKELQSNPADLVRIPV
                     CFDEVLGNDLSAIVSFAGMDHDEITSLFTDTTYHVFMLGFLPGFPYMGTVNEKIAVPR
                     KKQPVNVKTGAVGIAGMQAGIYPVHSTGGWHIIGHTPLKMFDKHSSSVTLLQPGQQVQ
                     FYGIDIHTYHQMCARP"
     gene            complement(2609..3349)
                     /locus_tag="VLL95_06800"
     CDS             complement(2609..3349)
                     /locus_tag="VLL95_06800"
                     /inference="COORDINATES: protein motif:HMM:NF016296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSR38607.1"
                     /translation="MKTIIIDDEKHCREVLSMLLQKHCPHIELIGSFSSGSEALEQIE
                     QLTPELVLLDIEMPGMSGFEFLSACNRRSFSVVFTTAYNEYAIQAIRHSALDYLLKPV
                     DKDELKKAVERAGNEQAMRPEKRIAQLLQSMQQGSEHKRFAVPTMEGLILINPEEIMY
                     IKSDGPYSHFYFADGRHLLISKTLREAEETLPAHLFFRIHNSYMVNMQYVQKYLRGEG
                     GEVVMRNGLQLPVSRNRKQEFLNLLERI"
     gene            complement(3330..>6311)
                     /locus_tag="VLL95_06805"
     CDS             complement(3330..>6311)
                     /locus_tag="VLL95_06805"
                     /inference="COORDINATES: protein motif:HMM:NF024883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSR38608.1"
                     /translation="YFMTNGHLLVSTENNRQLFEIDPQSGSILNNLGLLPDQFGKPVS
                     GYLRYMTRLADGRFAITSGYGGLYIVDPVSKRIWNYSHDPLNDMSVSGNNTFRIRSTP
                     DGFIFVTTRSSGLNIVNVNQPQAYSIKRFKDSVTHRIFDGFVSPMAQDHQGKIWLGSQ
                     GGLFRWNGTGNEVLFSEYGTIEGESIAGKEEVRALFSHPNNSLWVGLNRYGVVVLNQA
                     GKAIRYFNRQQEDSTLQLPSNFITHITSVPGDGLIWIATNGGLRFADPATMRIVRHPQ
                     QSLLDSLRRKSITHIWARNEEEIWIATNRGAWRFLPKLNMLTHVSQKQGLSNTIVYGI
                     SGDALGNVYLAGRLGLDIWQPNGKINHYNRLNGLPEDYCQSVITDKQGRIWVGNTKFL
                     VAIDPANRVLRSFDASYGFTGNGFRLQSAFRLQDGRLLFGCNEGISVFDPDKMWLSVQ
                     PVSARIEGLRANDSIWHFTADADLDLAAEQNSPVFQLQAIALHGLKTVRLQYRLTGLD
                     SVWREVDEGLIVQTYSLAPGAYQLDIRYHTGDNQWRAGANTVLFTIDRLWYRSPWFIG
                     LIGLVVFSLAWLLGRMWMAQRKLRREEAETEKLILQLSQILHEQQDVESMLWHLARNC
                     ISRMQLEDCVIYLLDEERNVLYQQAAWGPKMGETDTINDPIEIPVGKGVVGYAAAHAQ
                     PVMVPDTRLDERYLVDDQQRLSELAVPILADGNVLGVIDSEHSRKGFFTNKHVAILTT
                     IASVLGSKLASLRAAQEKNSAEFELLENKQRLSEVEMKALRAQMNPHFLFNSLNSINN
                     FILKNDADNASAYLTRFARLVRLILDNSRHEWVSLDQELQALKLYIELEQLRFDQTFD
                     YKIQMEPGIDVMHCQIPPMMLQPYVENAIWHGLLHRNSEGGLLQINLSLNGKDQLKIT
                     IEDNGVGRKASAIRKSHQRSMHKQSHGMQITSERLDTINAVYQIDARSSIEDLYDDAG
                     HATGTRVVLTMKYRSYENDHY"
BASE COUNT         1601 a         1586 c         1477 g         1647 t
ORIGIN      
        1 tggaaaaact cgtgaagaaa tatggcgcca aacgcatacc gtacgtgagc attgccacca
       61 gtgtaaacat ggccggtggt cagcccatca gcatgaaaaa cctcaaggaa ctgcggtcat
      121 ttacgaggaa gcatggcata cgcatcatcc acgacatgac ccgtgtggcc gagaatgcct
      181 tcttcattca gcgcagggaa aaaggatatg acaagaagtc catcgccagc attgtaaagg
      241 agatttgcag ctataccgat ggcgctacca tgagtgccaa gaaagacgcg ttggtgaaca
      301 tcggcggatt tttggccatc aacgattggg atgtgtttga agaagcccgc aacatggtag
      361 tagtgtacga aggattgcat acctatggcg ggttggcagg gcgtgatatg gaggccatgg
      421 ccattggcat tggagaaagt gtggacgatg aacacatcaa agcaagagtg ggacaagtga
      481 tctacctggg tgaaaagatg tacaactttg gcattcccat tgtgcacccc attggcggac
      541 acggcatttt cgttgatgcg aaaaaatttc tgcctcacat tccacaggac cagttcccgt
      601 cacaaacgct ggctgctgaa gtgtatctcg attcaggagt acgtaccatg gaacggggcg
      661 ttgtatccgc tggtcgcaaa gccaatggcg agaactattt ccccaaactg gagctggtac
      721 gatttaccat tccccggcgt gtatatacgc agtcgcacat ggacgtgatc gctgaatcca
      781 ttgccagggt gtttgaaaga agaaacaaga tcaggggatt aaaaatggtg tatgaaccga
      841 aatacctgcg ttttttccag gctcgtttcg aaccattgaa ataacccact tacaggccat
      901 cactagccaa aagccatttg cagccgcacc gcactggcga cctgctgtaa gtggcttttc
      961 atttttgcta aatgagcgct agcagtggcc atatcggtta gttggaaatg gaccaggcta
     1021 cctggtgata attgtgccag tttgggcaga tcggcccgaa tgacttgtag tatcctcggg
     1081 tagcctccca ctgtctgatg atcggccatc agggttacga tgttgccatt gggcaacaac
     1141 tgtattgttc caaaagtcac tgccgaggaa accattttat ccgcatttgt gcattgcaaa
     1201 gccggagcct cccaattcaa tgccatcctg tcgctgttgg gttttagcaa aaatggctgc
     1261 gacaatatgc gtgattttga ttcttcactt aaccaatgcc attcaggccc tggtaaagcc
     1321 ctgatagaat cagaagctga caaggcttct gcgtaccatt tgaaattggt tgatgcagga
     1381 tttaccaccg tattatgtgg ttcaaaaaat atttgatcgc ctgccatgag tttccttccc
     1441 cccataccgc ccagttttga tttcaagtct gtactggcac tgcccaaatc attggatatt
     1501 ttccattttc cgtgtatggc aaggcaagct ctttctcctt tgtatttctt gccaatcagt
     1561 aaccggtcat tgggttgtac gatcaaggtg cggttgaaaa caactgaacg accattgatg
     1621 aaaatctccc aatctgcccc cgtgatggat atgatggccg ctttggtaaa acgcagcgtt
     1681 gatgccggaa aatgcatttc aacaacaggc gcatccaacc ggttgcccac taaggcattg
     1741 gccagttcat gagcatacca atccatgggg ccattggtac taatgcccag atgagcccaa
     1801 tggtgccgcc ccccatcctg gatggtgtct aacagtcctg ctttttcaac aatcatgctc
     1861 atggccgggc acacatttgg tgataggtat gaatatcgat accataaaat tgcacctgct
     1921 gcccgggttg cagcagtgtt acactggaag aatgcttgtc gaacattttt aaaggcgtgt
     1981 ggccgatgat gtgccagcca ccggtcgagt gcaccgggta gatgcctgct tgcatgccgg
     2041 caatccctac cgctccagtt tttacattca caggctgttt cttccttgga acagcaattt
     2101 tttcatttac agtacccatg tatggaaacc ccggcagaaa gcccaacatg aagacatggt
     2161 atgtcgtgtc agtaaaaaga gaagtgatct catcatgatc cataccggca aatgatacaa
     2221 tggcagagag atcattccct aacacttcat caaaacatac aggaatcctt acaaggtctg
     2281 cagggttgga ttgaagctct tttggtcctg ttgccaggca ttcctgtagc catgtttcca
     2341 cctgggtcga ccaggtcgac ggattttgaa ggatacccgt gctatcaaac tctacataca
     2401 aactgtcgta tgccggtagt atctgcagta aaccggggag ggaatgaagt cttaaccatt
     2461 tcgcacttgc atgcacttgt tcattggtac cggcatttat gccgggcaac cactggataa
     2521 gccaggccgt ttcatgcatt cggaacagtg cgggataaga catactgtga aagtgaccca
     2581 agatacaacc cgggcacctt ccccggcatt atattctttc caacaaattg aggaattcct
     2641 gcttccggtt tctgctcacc ggcaattgca aaccattccg catgaccact tccccacctt
     2701 cgcccctcag gtacttctgt acatattgca tattcaccat gtacgaattg tgaatgcgga
     2761 agaaaagatg ggcaggcagt gtttcttctg cttctctcag tgttttggaa ataaggaggt
     2821 ggcggccatc tgcaaagtaa aaatggctgt aggggccatc gcttttgatg tacatgatct
     2881 cttccgggtt aatgagtatc aggccctcca tggttggcac agcaaaacgc ttgtgctcgc
     2941 ttccctgctg catgctttgc agcaactggg cgatcctctt ttcaggtcgc atggcttgtt
     3001 cattgcctgc tctttccacg gcctttttga gttcatcttt gtctacaggc ttgagcagat
     3061 aatcgagggc actgtgacga atggcttgaa tggcgtactc attgtatgcg gtagtgaata
     3121 ccacggaaaa tgaccggcga ttgcaagccg acaaaaattc gaaaccgctc atgcccggca
     3181 tctcgatatc cagcaatacc agttccggtg tgagttgttc aatctgttcc aaggcttctg
     3241 atccactgga aaaactcccg atcagttcta tatgcggaca atgcttttgc agcagcatcg
     3301 aaagcacttc tctgcaatgc ttctcatcgt caataatgat cgttttcata acttctgtat
     3361 ttcatggtga gtacaacacg tgtacctgtt gcatgccctg catcatcata cagatcctca
     3421 atggaggagc gggcatcaat ctggtaaact gcattgatag tgtcaagtct ttcggatgtt
     3481 atttgcatgc catgcgattg cttgtgcatg ctgcgttgat gcgactttcg gatggccgag
     3541 gccttacgtc caacgccgtt gtcttctatg gtgattttca attgatcctt gccattcagg
     3601 gaaagattga tctgcagcaa tcctccctcc gaatttctgt gtaacagtcc atgccaaatg
     3661 gcgttctcca cataaggctg cagcatcatg ggcgggatct ggcaatgcat aacatcaatg
     3721 cctggctcca tttggatctt ataatcgaat gtctgatcaa agcgcagttg ctccaattct
     3781 atgtacagtt tcaatgcctg caattcctgg tccagcgaca cccattcgtg gcgactgtta
     3841 tcaagtataa ggcgcaccag gcgggcaaag cgggtgagat aagccgatgc attatctgca
     3901 tcatttttca gaatgaaatt gttgatagaa ttgaggctat tgaaaaggaa gtgcggattc
     3961 atttgcgccc tcagcgcctt catttccact tcagaaaggc gttgcttgtt ttccagcaat
     4021 tcgaattccg ctgaattctt ttcttgcgct gcccgcaaac tggccaattt gctgcccagt
     4081 acagaggcaa tagtggtgag tatggccaca tgcttgttgg tgaaaaaacc tttacggctg
     4141 tgctcgctat caatgacacc cagcacattg ccatcggcaa gaattggtac cgccaattcg
     4201 gaaagccgtt gttggtcatc caccaggtat cgttcgtcaa gccttgtatc aggtaccatt
     4261 accggttggg catgggcggc agcatatcct acaacacctt tgcccacagg gatttcaatc
     4321 gggtcattaa tcgtatccgt ttcacccatc ttcggtcccc aggctgcctg ctggtaaagc
     4381 acattccgtt cctcatccag caaatagatc acacaatctt ctaactgcat gcgagaaatg
     4441 caattacgag ccaggtgcca aagcatgctt tcaacatctt gttgttcgtg cagaatttgg
     4501 cttagttgca atattagctt ttccgtttcc gcttcctcac gccgcaattt tcgttgagcc
     4561 atccacatgc ggcccagcag ccacgcaagg gaaaacacaa ccaatcctat caacccgatg
     4621 aaccaggggc ttcgatacca aagtcgatcg atagtgaata acactgtatt cgcaccagcc
     4681 cgccattggt tgtcaccggt gtgataacga atgtcaagtt ggtaggcgcc tggagcaagc
     4741 gaataagtct gcacgatcaa tccctcatca acctctctcc acacagaatc aagcccggtc
     4801 aggcgatact gcaacctgac cgttttcaat ccatgcagcg ctatggcttg tagttgaaat
     4861 acaggtgagt tttgttctgc cgccaaatcc aggtcagcat cagctgtaaa atgccagatg
     4921 ctgtcatttg cccgaaggcc ttctattctt gccgataccg gttgtaccga cagccacatt
     4981 ttatccggat cgaaaactga aatgccttca ttgcaaccaa acaacaggcg gccatcctgc
     5041 aacctgaaag cagactgaag gcggaatcca tttccggtaa atccataact cgcatcgaag
     5101 gagcgtaaga cccgattggc ggggtcaata gccaccagga atttggtatt tcccacccaa
     5161 atacgcccct gtttgtcggt gataacactt tgacaataat cctccggcaa tccgttcagc
     5221 cggttgtagt gatttatttt cccattgggc tgccaaatgt cgagcccaag acggcctgcc
     5281 aggtaaacat tgcccaaggc gtcgcctgaa ataccataca caatagtatt gctcaggccc
     5341 tgcttttgcg atacatgcgt gagcatattc agctttggca aaaaccgcca ggctcccctg
     5401 ttggtggcta tccaaatctc ttcttcattt ctggcccaaa tatgtgtgat gctttttctg
     5461 cgaagggaat caagaaggga ctgttgcgga tgccttacga ttcgcatcgt ggctggatcg
     5521 gcaaaacgca aaccgccatt ggtggcaatc catattaacc catcgccagg caccgaggta
     5581 atatgcgtga taaaattgga aggcaattgc agcgtactat cctcttgctg ccggttgaaa
     5641 tagcgaatgg cttttcccgc ctggttgagc accactacgc cataacgatt cagccctacc
     5701 cacaaagagt tgttggggtg actaaaaagg gccctgacct cctcttttcc cgcaatggat
     5761 tcaccctcaa tggtaccata ctcgctgaag agcacttcat tgccggtacc attccacctg
     5821 aaaagtcctc cctgtgaacc aagccagatc ttcccttgat gatcctgcgc cattggacta
     5881 acaaacccat cgaatatgcg atgggtaacc gagtctttga atcgcttgat gctgtaggcc
     5941 tgtggctggt ttacattcac gatattcagg ccagaagaac gagtggtcac aaaaatgaaa
     6001 ccatcgggtg tgctgcgaat cctgaaagtg ttattccctg aaacactcat gtcattgagc
     6061 ggatcgtgag agtagttcca tatccttttt gaaacaggat cgacaatgta caagccgcca
     6121 tatccgctgg taatggcaaa acggccatca gcgagccttg tcatatagcg gaggtaaccg
     6181 ctcacgggct ttccaaattg atcaggaagt aatcccaggt tgttaaggat gctcccggat
     6241 tgcggatcta tttcaaacag ttgccggttg ttttccgtgc tcaccagcaa atgcccattg
     6301 gtcatgaaat a
//
LOCUS       DATIQF010000411         1526 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_249914,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000411 DATIQF010000000
VERSION     DATIQF010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1526
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249914"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..185
                     /locus_tag="VLL95_06810"
     CDS             <1..185
                     /locus_tag="VLL95_06810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38609.1"
                     /translation="EVPIVFVDRKVGQSKMNHGIIKEGVLGVIKIQWNSLFKNYRKRV
                     KNGGDKTGFSAVQNAR"
     gene            complement(215..>1526)
                     /locus_tag="VLL95_06815"
     CDS             complement(215..>1526)
                     /locus_tag="VLL95_06815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38610.1"
                     /translation="TMILARVLHISIHICKVLIPMALPGIVLSFVKFSWIAGFSFVLA
                     IILSAAFSIFLINALYLLVLRITTPDRFQNIISYIQIAFTILVYASYQVVPRLFDKSF
                     NEQFTLGHSFSWLAAPPYWYGALLSMVTQPLADPVLITSATLAILMPIVGLVLVVKYF
                     APTFNQKLSMIAGSGAELMPASKKNISSHAGIYSRTMAKIFTRQGVERESFLFNWKQM
                     LRSREFKMKVYPGIGYLLVLAALPMLRSKASFSSFANNLRLGEGGSKFFIMSMLYITG
                     LLVLTAIGQMTYSDKFKASWIFRSTPVQQPGLLLSGGAKAAFAQFLLPAYVIVAAPLW
                     VINGWDIVVHLVTSFAGLLFITAFITYMGERHLPWSAPPNDQTKGGTVFKNILLMLGL
                     GITGVIHGVLFAYPLALWALAIIAGISAFALFKSISKFDWLDLK"
BASE COUNT          445 a          349 c          386 g          346 t
ORIGIN      
        1 tggaagtacc cattgtattt gtggatcgca aggtgggtca aagcaaaatg aaccacggca
       61 tcatcaaaga aggggtgctc ggcgtcatca agatccaatg gaacagcctg ttcaaaaatt
      121 accgcaagcg ggtgaaaaac ggtggtgaca aaactggttt ttctgctgtg cagaatgccc
      181 gctgatcctt caatctattt agatcgtttt ctaattactt caaatccagc cagtcgaatt
      241 tgctgatgga tttaaacagc gcaaacgcac tgatacccgc aataattgcc agtgcccaca
      301 aggcgagggg ataggcaaac agtacaccgt gaatcacccc ggtaataccc aggcccagca
      361 tcaacaaaat gtttttgaaa acggtaccgc ctttggtttg gtcgttgggt ggtgccgacc
      421 atggcaaatg cctttcaccc atataggtaa tgaacgctgt gatgaacaac aaacctgcaa
      481 aggaggtgac gagatgcaca acaatgtccc agccattgat gacccacaat ggagccgcaa
      541 cgattacata agcaggaagc agaaactgtg caaatgccgc tttggcacca ccactgagca
      601 gcaaaccagg ttgctgaaca ggtgtggatc tgaaaatcca ggatgctttg aacttatcac
      661 tgtaagtcat ttgcccaatg gccgtaagca ccagcaagcc cgttatgtaa agcatcgaca
      721 tgatgaagaa tttgctgcct ccttcaccca gtcgaaggtt gttggcaaag gatgagaagc
      781 tggctttgga gcgcaacatg ggcaatgctg ccaataccaa taaatagccg atgccagggt
      841 atactttcat tttgaattca cgactgcgca gcatttgttt ccagttgaac aaaaagcttt
      901 cccgttcaac gccctgcctg gtaaagatct ttgccatcgt cctgctgtaa atgcccgcat
      961 ggctggagat attctttttg gaggctggca tcaattccgc accgctgccg gcaatcatag
     1021 atagtttctg gttgaaggtg ggcgcaaaat attttaccac taacaccagt cccactattg
     1081 gcatcagtat ggccagtgtg gcagatgtta tcaaaacagg atctgccaac ggttgtgtga
     1141 ccatggacaa cagggcacca taccagtaag gtggagccgc cagccaggag aatgaatggc
     1201 ccagggtaaa ttgctcattg aaacttttat caaacagcct cggcaccacc tggtacgatg
     1261 catatacgag tatggtgaat gcgatctgga tatagctgat gatgttttga aaccgatctg
     1321 gcgtggtgat gcgcagcacc agcaggtaca aggcattgat gaggaaaatg ctgaatgctg
     1381 cggacaggat gatggccaac acaaaggaaa agccggcgat ccacgagaat ttgacaaaag
     1441 aaagaacgat accgggcagt gccataggga tgagcacttt gcaaatgtgg atgctgatgt
     1501 gcaatacacg ggcaaggatc atggtg
//
LOCUS       DATIQF010000412         2146 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_6743, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000412 DATIQF010000000
VERSION     DATIQF010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2146
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6743"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1032
                     /locus_tag="VLL95_06820"
     CDS             <1..1032
                     /locus_tag="VLL95_06820"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR38611.1"
                     /translation="VFHLAGILLTVFAGGFWSLFISTLLIGIANGTVEAACNPLVAAI
                     YPDNMTTKLNHFHLWFPGGIVIDTLLVFFLSKINIGWQVQVGLMLIPALIYGYLFSKL
                     EFPVTERVASGISTSEMYASLLNPLFLFMIICMFGTAITELFTGQWIDVLLRNVTDNA
                     LLILTLTTGVMVIGRGLAEPVVHRFSPQGVLLISAVLATAGLYLLGHSTGNMIFFGAL
                     VFGMGVCYFWPTMLGFVAENLPKTGAVGINLMGGAGMFAVSIYTMFMGQHYDEILAEK
                     LPAGSNLADYMKADATPEMVAALNSAKSAAGPDILNTTLMIPIALIAAFTFLVIYMRG
                     KSKPGLASH"
     gene            1047..1919
                     /locus_tag="VLL95_06825"
     CDS             1047..1919
                     /locus_tag="VLL95_06825"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HSR38612.1"
                     /translation="MASRRNVIRNIVAGAAGITTIAGAKKVYAGMNEAAPLKGNINHS
                     VCRWTYGHLSLDELCVVAKEIGLKAIDLVGPKEWHILKKHGLDSSMCNGAEINLVDGW
                     NNKDNHQKLVQNYTEHIELVSKAGYKNLIWFTGNRRGMDDETGMRNTVEGIKKIVGLA
                     EKKGVVLQLELFNSKVDHKDYMADKSAWGVEMCKRIGSENVKLLYDIYHMQINEGDVI
                     RTIRDNHQYFGHYHTAGVPGRHEIDETQELYYPAIMEAIVKTGFKGYVAQEFIPTASD
                     KIAVLKDAVRRCDV"
BASE COUNT          570 a          494 c          568 g          514 t
ORIGIN      
        1 gtgtttcacc tggcgggcat cctgcttacg gtgtttgccg gcggcttttg gtcgctgttt
       61 atttcaacac tacttattgg tattgccaac ggcactgttg aagcagcctg caatcctttg
      121 gtggcagcca tttatcctga caacatgacc accaagctca accatttcca tctatggttc
      181 cccggcggta ttgttatcga cacgctgctg gttttcttcc tcagcaagat caatattgga
      241 tggcaggtgc aggtaggcct catgctgatc cctgctctta tttatggata cctgttttcg
      301 aaactggagt tcccggtgac tgaaagagtg gccagcggta tcagcaccag cgaaatgtat
      361 gcttcccttt tgaacccgct cttcctcttc atgatcatct gcatgttcgg cacggccatt
      421 acggaattgt ttaccggtca gtggatcgat gtgttgttgc gcaatgtgac cgacaatgcg
      481 ctgctgatac tgacgctcac taccggggtc atggtcatcg gtcgcggctt ggcagagcct
      541 gtggtacatc ggttttcacc ccagggtgtg ttgctcattt ccgccgtgtt ggccaccgcc
      601 ggcttgtacc tgctcggcca cagcaccggc aacatgatct tttttggcgc cctcgtgttt
      661 ggcatgggtg tatgctattt ctggcccacc atgctgggtt ttgtggcaga aaatttaccc
      721 aaaaccggag ccgttggcat caacctgatg ggaggagccg gcatgttcgc ggtcagcatt
      781 tacaccatgt tcatgggcca gcattatgat gaaatactgg cagaaaaatt gccggccgga
      841 tccaacctgg ccgattatat gaaagccgat gccaccccgg aaatggtggc ggcattgaat
      901 agcgccaaaa gcgctgccgg tccggacata ctgaatacaa cgctgatgat cccgatcgca
      961 ctaatcgctg cgttcacttt ccttgttatc tatatgcggg gcaagtcgaa acccggattg
     1021 gcttctcact aaaaaaacaa tctaccatgg cgagccgtag aaatgtaatc aggaacatag
     1081 tggcaggtgc cgccggaata accaccatag caggtgctaa aaaagtgtat gccggtatga
     1141 atgaagccgc tcctctgaaa ggcaacatca accacagcgt gtgtcgctgg acttatggcc
     1201 acctaagcct ggatgagctc tgtgtggtag ccaaagagat tggcctgaaa gccattgacc
     1261 tggtgggacc caaagaatgg cacatcctga aaaagcatgg ccttgacagc agcatgtgca
     1321 atggggcgga gatcaacctg gtggatggct ggaacaacaa agacaaccac cagaaactgg
     1381 tacagaacta taccgagcat attgagttgg tgtcaaaagc tggctacaag aacctgatct
     1441 ggtttacagg aaaccgccgc ggcatggatg acgaaacggg catgaggaat accgttgaag
     1501 gcatcaaaaa aatagtgggc ctggccgaga agaaaggcgt ggtgttgcaa ttggaactat
     1561 tcaactcgaa ggtggatcac aaagattaca tggccgataa aagcgcctgg ggcgtggaga
     1621 tgtgcaaacg cattggcagt gaaaatgtga aactgctata cgatatctat cacatgcaga
     1681 tcaatgaagg cgatgtgatc cgtaccatac gggacaatca ccaatacttc ggacattatc
     1741 ataccgctgg cgtacccggt cgtcatgaaa tagatgaaac gcaggaactc tactaccctg
     1801 ctatcatgga agcgattgtg aaaaccgggt ttaaaggata tgtggctcag gaattcattc
     1861 ctaccgcttc agacaaaata gcggtgttga aagatgcggt aaggcgctgt gatgtataaa
     1921 aaatgttgat ggctgacagt tgactgttga cagacatgag ctttagcata tttgaaaaag
     1981 cggttggtgc aggaacaaca aggacaaact aagtagtaac aaaaacatag aaatcagatg
     2041 gctgaaaaca cttatgatgc aattgtggta ggcagtggta tttctggcgg atgggctgcc
     2101 aaggaactca ctgaaaaagg attgaagacc attgtgctgg aaagag
//
LOCUS       DATIQF010000413         1633 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_6750, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000413 DATIQF010000000
VERSION     DATIQF010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1633
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6750"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            5..>1633
                     /locus_tag="VLL95_06830"
     CDS             5..>1633
                     /locus_tag="VLL95_06830"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSR38613.1"
                     /translation="MYLPILALVGIEGKMFRPMAQTVSFALIGAFLLSLTYVTMITSI
                     GIGRKISSKVDFSDKLTKKVEAMYKPVLELALHHRKWLIGLVLIVFTAAMLLMTTLGG
                     EFIPELEEGDFAVDTRLLTGTSLSTSVETSVKASKMLEDSFPEVEKIVCRIGASEIPT
                     DPMPVEMGDLIITLKSKDQWTSATSYDELANKMSHTLQQLPGLSAGFQFPVQMRFNEL
                     ISGARQDVVCKIFGENLDSLAYYAAQVGNVAKDVPGAADLYVETVTGLPQIVVEYDRQ
                     ALALYGADIAEVNQVLRTAFAGESAGLVYENERRYDLVMRLESPNRVDIDNVKQLLIN
                     TKSGAQVPLYLLAKVEVKEGPNQIQRENANRRIIVGFNVRGRDVESVVNDLQKKIDQT
                     VNLPSGYYIHYGGAFENLQAASARLMIAVPAALLMIFLLLYFAFGSFKYALLIFTAIP
                     LSAIGGVFALWLRDMPFSISAGVGFIALFGVAVLNGIVLISEFNRLKHHEPLSLMEII
                     MKGTHTRLRPVLMTAAVASLGFLPMAISQDAGAEV"
BASE COUNT          399 a          367 c          427 g          440 t
ORIGIN      
        1 catagtgtat ctccccatac ttgcgttggt gggcattgaa ggcaaaatgt ttcggccgat
       61 ggcgcaaact gtttcattcg ccctcattgg cgcctttttg ctttcactca cttatgttac
      121 gatgattaca tccattggga tcggaaggaa aatatcctcg aaggtggatt tttcagacaa
      181 gctgacgaag aaagtagagg ccatgtacaa gccggtcctt gagttggccc ttcatcatcg
      241 caaatggctg ataggtcttg tgttgatcgt gttcaccgcg gccatgctgc tgatgacaac
      301 acttggcggg gagttcatac cagaacttga ggaaggtgat tttgctgtag atacccgcct
      361 gctcaccggc acttcacttt caacttctgt ggaaacctcc gttaaagctt ccaagatgtt
      421 ggaggatagt tttccggaag tcgagaaaat tgtttgccgc attggcgcca gtgaaatacc
      481 cactgatccc atgccggtgg aaatgggtga tctcatcatc acacttaaga gcaaagatca
      541 gtggacctcc gccaccagtt atgatgaatt ggccaacaag atgagtcata cgttgcagca
      601 acttcccggg ctttcagcag gttttcaatt ccctgtgcaa atgcgtttca atgaactcat
      661 ttcaggtgcc aggcaggatg tggtgtgtaa gatatttggt gaaaatcttg actcactggc
      721 ctactacgcg gcacaggtgg gtaatgttgc caaagatgtg ccgggagccg cagacctgta
      781 cgtggaaacc gtgaccggtt tgccacaaat tgtagtagag tacgacaggc aggcgctggc
      841 attgtatgga gcggacattg ctgaggtcaa ccaggtactg cgtaccgcct tcgccggaga
      901 atctgcaggg cttgtttatg aaaacgaacg tcgctacgat ttggtgatgc gcctggaatc
      961 acccaacagg gtggatattg ataatgtgaa acagttgctt atcaatacaa aaagtggcgc
     1021 ccaggttccg ttgtatttgc tggcaaaagt ggaggtgaaa gaaggcccca accagataca
     1081 gagagaaaat gccaaccgta ggatcatcgt aggattcaac gtcagaggac gcgatgtgga
     1141 aagcgtggtt aacgacttgc agaagaagat tgaccaaacc gtcaatttgc cttccggcta
     1201 ttacattcat tacggtggcg ctttcgaaaa tttacaggct gccagtgccc ggctgatgat
     1261 tgccgtacca gcagcattgc tcatgatatt tttactgctc tacttcgctt ttggttcgtt
     1321 caagtatgca ttgctcattt tcactgccat cccgttgtcg gctataggcg gtgtatttgc
     1381 actatggctt cgcgatatgc cattttcgat atccgcaggt gtaggtttta ttgcgctatt
     1441 tggtgtggca gtgctcaatg gtattgtatt gatcagtgaa ttcaaccggc tgaaacatca
     1501 tgagccatta tcattaatgg aaatcattat gaagggaaca catacccgtt tgcgacctgt
     1561 gttgatgaca gcggcagtgg cgtccctggg ctttttgccc atggccatca gccaggatgc
     1621 cggtgccgaa gtg
//
LOCUS       DATIQF010000414         3816 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_189263,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000414 DATIQF010000000
VERSION     DATIQF010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3816
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189263"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..281)
                     /locus_tag="VLL95_06835"
     CDS             complement(<1..281)
                     /locus_tag="VLL95_06835"
                     /inference="COORDINATES: protein motif:HMM:NF013348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR38614.1"
                     /translation="MDSTLLFRFKQYVQDQQLIPGGTHVLLALSGGIDSVVLGQLLKQ
                     TSVSFEVLHANFQLRGPESDRDEAFAAQCAGEWKVPFTARRFETEGYAA"
     gene            complement(291..605)
                     /locus_tag="VLL95_06840"
     CDS             complement(291..605)
                     /locus_tag="VLL95_06840"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR38615.1"
                     /translation="MERINKLKEYLQAQPNDSFLQHALALEYIKLGDDMAAVDLFNNL
                     LAHEPGYVGSYYHLAKTHERLGNKEQAIAAYEEGMKQAKQAGDRHALSELQAAWEDLT
                     DY"
     gene            728..1471
                     /locus_tag="VLL95_06845"
     CDS             728..1471
                     /locus_tag="VLL95_06845"
                     /inference="COORDINATES: protein motif:HMM:NF013200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HSR38616.1"
                     /translation="MKILVCISKTPDTTAKIAFTDNNTKFADAGVQFIVNPYDEWYAL
                     VRALELKEAGAASHVTLVTVGGADAEPIMRKALAIGGDDAVRVNADAADSFFIASQIA
                     AVAQEGGYDLVLTGKETIDYNGSSIGGMVSELIDAPYVSLATQLNVSGGNATLVREIE
                     GGEEKLEASLPLVVSCQKGMADQRIPNMKGIMGARTKPLTVKEPVAVDALTSIVSFEM
                     PPAKSGVKLVSADQPEELIRLLHEEAKVI"
     gene            1569..2534
                     /locus_tag="VLL95_06850"
     CDS             1569..2534
                     /locus_tag="VLL95_06850"
                     /inference="COORDINATES: protein motif:HMM:NF013200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HSR38617.1"
                     /translation="MVLIFADQADGHIKKASLEALSYGSQLAAQLGVSAEAVVLGSAD
                     AAQLTSLGQYGISKVHHDANQAFDHFDAQVFTKAIAALAQQAGATVLVFSNNTSGKAI
                     APRLSARLKAGLVTGAIALPDTSNGFVVKKNVFSGKAYANVQINSAIKIISLSPNAFG
                     IHAGSGTTEVVSVSLPADGGKTKVTGVEKVTGTVPLGEAELVVSGGRGLKGPENWGLV
                     EDLAKAMGASTACSRPVADAHWRPHHEHVGQTGGAIAPNLYVAIGISGAIQHLAGVNR
                     SKTIVVINKDPEAPFFKAADYGIVGDAFEVVPKLTEAVKKLKGIA"
     gene            2648..3250
                     /locus_tag="VLL95_06855"
     CDS             2648..3250
                     /locus_tag="VLL95_06855"
                     /inference="COORDINATES: protein motif:HMM:NF014618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nuclease family protein"
                     /protein_id="HSR38618.1"
                     /translation="MSKIELEIVALSHSITNTHSYAVVLGEVNGTRRIPIVIGGFEAQ
                     AIAVVLEHIQPSRPLTHDLMKNFMLAFNIELQEIIISDLQEGIFYSKLICNTATDTIE
                     IDSRTSDALALAVRFGCPIYTYDHIVEEASLHVEGTSTSTSKRKRGEPREPEPVSVEG
                     EDYKSMSLEQLQELLDEMVAVEDYIKAAAIRNEINSRKGS"
     gene            3290..>3816
                     /gene="ispE"
                     /locus_tag="VLL95_06860"
     CDS             3290..>3816
                     /gene="ispE"
                     /locus_tag="VLL95_06860"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: protein motif:HMM:TIGR00154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HSR38619.1"
                     /translation="MVIFPNCKINIGLNIVRKRSDGYHDLETIFFPVPLYDALEVIST
                     GHEDSFSQTGLPIAGDASGNLCVKALQLVRSQFPDLPAVKLHLHKAIPMGAGLGGGSS
                     DGAHTLLLLNKKFNLGLSTSTLIEMALQLGSDCPFFIENKTCFAWSRGEMMEPLELEL
                     KGITLLLINPGIHVST"
BASE COUNT          978 a         1000 c          938 g          900 t
ORIGIN      
        1 aacgcagcat agccttccgt ttcaaaacgt cgggcggtaa agggcacctt ccattcccca
       61 gcacactggg cggcaaatgc ttcatccctg tcactttccg gcccacgcaa ttggaagttg
      121 gcgtgcaata cttcaaacga aacagaggtc tgcttcagca gttggcccag caccacggaa
      181 tcgatgcccc cgctcaatgc cagcagcaca tgcgtcccgc ccgggatcaa ttgctgatcc
      241 tgcacatatt gtttgaatcg gaaaagtaaa gtgctgtcca aatcagattt ttagtagtca
      301 gtaagatctt cccaggcggc ttgcaattca ctaagagcat gcctgtcgcc ggcctgcttg
      361 gcttgcttca tcccttcttc ataagccgca atggcctgct ccttgttgcc caaccgttca
      421 tgtgttttgg ccaggtgata gtaagagccc acgtaaccgg gctcgtgtgc cagcaggttg
      481 ttgaacaaat ccacagcagc catgtcatcg cccagcttga tgtattccag ggccagggca
      541 tgctgcaaaa aactatcgtt gggctgcgct tgcaggtatt ctttcagttt gttgattctt
      601 tccatctcgc ttaacaaaaa ttctccaaaa tttgcccgcc gtttgaaaac ggcactccta
      661 tatttgcaaa tagttgcata aacaactaat ttgtttttct tctcactgcc aaacaaaaaa
      721 tgtccatatg aaaatcctgg tgtgtattag taaaacgcct gacaccacgg caaaaatagc
      781 cttcacagac aacaacacga agtttgctga tgccggagta cagtttattg taaaccccta
      841 cgacgagtgg tatgcactgg tgcgtgccct tgagctgaaa gaagccggtg cggccagcca
      901 tgttacactg gtaactgtag gtggtgccga tgcggagccc attatgcgca aggccctggc
      961 cattggcggc gacgatgccg tgcgggtaaa cgctgacgct gccgacagtt tcttcatcgc
     1021 cagccaaatt gcggctgtgg cgcaggaagg cggctacgac ctggtgctta ccggcaaaga
     1081 aaccatcgac tataacggta gcagcattgg cggcatggtg tccgaactga tcgatgcacc
     1141 ctacgtgagc cttgccacgc agctcaatgt atcaggaggc aatgccaccc tggtacgcga
     1201 aattgaaggc ggcgaagaaa aactggaagc atcactgcca ttggtggtta gttgccagaa
     1261 aggcatggcc gatcagcgca tccccaacat gaaaggaatt atgggggccc gtaccaaacc
     1321 ccttaccgtg aaagaaccgg tggccgtaga cgcactcacc agcatcgtat cattcgaaat
     1381 gcctcctgcc aaaagcgggg taaagttggt aagtgccgat caacccgaag aactcattcg
     1441 cctgctgcat gaagaagcca aagtgatata gtctttttgt gacgagctgt gtgcccccac
     1501 tcagcatcgt tgtgtcactc acttcatctc aatagcaaca ttcatcattc ataattcatc
     1561 attttcttat ggtactcata ttcgccgatc aggccgacgg acatatcaaa aaagcatcgc
     1621 tggaagcatt gagctacggc agccaactgg ctgcgcaact gggcgtaagc gctgaagctg
     1681 ttgtactggg cagcgcagat gctgcacaac tcacttcttt gggccaatat ggcatcagca
     1741 aagttcatca cgacgccaac caggcattcg accattttga tgcgcaggtt ttcaccaaag
     1801 ctattgctgc gttggcacaa caggctggcg ccactgtgct ggtcttcagc aacaatacca
     1861 gcggcaaagc cattgctcca cgcctcagcg cccggctgaa agcgggcctg gtaaccggag
     1921 ccattgcact gcccgatacc agcaatggat tcgtggtaaa gaaaaacgta ttcagtggca
     1981 aggcctatgc caatgtgcag atcaattctg ccattaagat catttcgctc agccccaatg
     2041 cttttggcat ccatgccgga agtggcacca ccgaagtagt gagcgtaagc ctgccagccg
     2101 atggcggtaa aacaaaagtg accggcgttg aaaaagtgac cggtactgtg cctttgggcg
     2161 aagcggaatt ggtggtaagt ggcggccgtg gtttgaaagg acccgaaaac tggggattgg
     2221 ttgaagacct ggccaaagcc atgggtgctt ccactgcctg cagtcgcccg gtggccgatg
     2281 cgcattggcg tccgcaccac gaacacgtag gacaaactgg tggtgccatt gcccctaacc
     2341 tttatgtagc cattggcatc agcggtgcca ttcagcacct ggcgggggta aaccgcagca
     2401 agaccattgt ggtcatcaac aaagatcctg aagcgccctt cttcaaagcg gcggattacg
     2461 gcattgttgg agacgctttt gaagtggttc ccaaactgac cgaggcggta aaaaaactga
     2521 agggaattgc ctgattgagc tattctataa acataaagcc acttcatttc gaagtggctt
     2581 tttttatgcc atacagcccg gtttggcagg ctcgtttgtt aaggcatttc gtgtaaattt
     2641 gccgcacatg agtaagatag aactggaaat tgtggcgctt tcgcacagca ttaccaatac
     2701 gcattcctat gccgtagtgt tgggcgaagt gaatggcacc cgtcgtattc ctatcgtaat
     2761 aggaggtttt gaagcccagg ccattgctgt ggtgttggaa cacatccaac ccagccgtcc
     2821 ccttacccac gacctgatga aaaatttcat gttggccttc aacatcgaat tgcaggagat
     2881 catcatttcc gatttgcagg aaggtatttt ctattcaaaa ctcatttgca atacagcaac
     2941 agacaccatt gaaattgaca gccgcacttc cgatgctttg gcattggcgg ttcgtttcgg
     3001 ttgccccatt tacacctacg atcatattgt ggaagaagcc agcctgcatg tagaaggcac
     3061 ttccaccagt acctccaaac gcaaacgtgg tgagcccagg gaaccggaac ccgtaagcgt
     3121 ggaaggcgaa gattacaaat cgatgagcct ggaacaattg caggaactgc tggatgaaat
     3181 ggtggctgtt gaagactaca tcaaggccgc agccattcgc aacgaaataa acagccgcaa
     3241 aggcagctaa tccaggtaag ctggcaattt caattcttct ttactacaca tggttatttt
     3301 ccccaactgc aaaatcaata ttggactcaa tattgtgcgc aagcggagcg acggatacca
     3361 cgatctcgaa accatttttt ttccagtgcc gctttacgat gcgctggaag tgatctccac
     3421 ggggcacgaa gacagttttt cccaaacagg tcttcccatt gccggtgatg catccggaaa
     3481 tctttgtgtc aaggcccttc aattggtacg cagtcaattt cccgatctgc ctgcggtaaa
     3541 actccacctg cacaaagcca ttcccatggg agcaggcctg ggtggtggca gcagcgatgg
     3601 cgctcataca cttttgctgc tcaacaaaaa attcaacctt ggcctttcca cttcaacgct
     3661 gattgaaatg gcgctgcaac ttggcagcga ttgtccattt ttcattgaaa acaaaacctg
     3721 ctttgcctgg agccggggcg aaatgatgga acccctcgaa ctcgaactga agggcatcac
     3781 tttgctattg atcaatcccg ggatccatgt cagcac
//
LOCUS       DATIQF010000415         2802 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_97822, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000415 DATIQF010000000
VERSION     DATIQF010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2802)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2802
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97822"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..903
                     /locus_tag="VLL95_06865"
     CDS             <1..903
                     /locus_tag="VLL95_06865"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSR38620.1"
                     /translation="QYVTAEKAYKTNPNVAFQGGDENYLELNGYKLAAGRNFSANDVN
                     TGRAVVVLGDDVVNKCFGGNAARALDRFVKIGNRPYLVIGVLQKKGASAFLNLDNVAI
                     TTYNNIRQVATNINTFSIGVMVNDYKLLDNAEGQATGLFRNIRKLDVAEQDNFYIDKS
                     DALAEMFIGFLSGISGAAGVIGLITLIGAAIGLMNIMLVAVTERTKEVGLTKAIGATR
                     KNIRQQFLFESIIISLLGASFGIVLGVLVGNVFGLILKTGFVIPWLWVLLGVIICFVT
                     GLLAGFYPANKASKLDPIVALRYE"
     gene            complement(925..1788)
                     /locus_tag="VLL95_06870"
     CDS             complement(925..1788)
                     /locus_tag="VLL95_06870"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSR38621.1"
                     /translation="MRYTGMLGVLLMGIIFIGCKKDQFESDPSNASVALELKNVSYGS
                     GTLQKADVYLPANRSQASTKTIILIHGGSWVGGDKNDLNNSIPLMKASLPNVAFVNIN
                     YTLANGSEATRHPAQMNDLKTLLQFLNSQSAQWKISQSYTMLGVSAGGHLGMLYAFSF
                     DTEKQVKLVASIVGPTNLTDPFYVSNAIFQSWMIAYLGKTFSQDPALFQQLSPLYQVT
                     ASAPPVYLAYGGLDPLVPSSNHTMMETKLKELKVPYRYDYYPFEGHEFSKETILKTVS
                     SFSQFWKLQVP"
     gene            complement(1908..>2802)
                     /locus_tag="VLL95_06875"
     CDS             complement(1908..>2802)
                     /locus_tag="VLL95_06875"
                     /inference="COORDINATES: protein motif:HMM:NF027637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HSR38622.1"
                     /translation="NKLTIEKLKNPRNWWGDGESYNDDPRSQTEDLGDNAIKASDYGV
                     KNLKRILPQLPEWTKKSGEAYEDYQTIYNQVIGQFGRYIGHVSRSIGGIERTPKTADQ
                     PGAVYEFTAKARQKESMKWIQENVFKTPTWVIDGKYTSLTNQSPQSVISGLQNRALGT
                     MFSGNTVSKLQRFEAEKPAEAYTLMEMMTDLRKGVFSELAAKKPIDIYRRSLQKDVTE
                     RLISVVKPGESPSNISFGGITISTGGSNSANSDLVSVAKYQLRTLQSEIRTALPTITD
                     QSSKVHLQDLQDRIEKALKND"
BASE COUNT          673 a          637 c          714 g          778 t
ORIGIN      
        1 caatatgtga ccgccgaaaa ggcctacaaa accaatccga atgtcgcgtt ccagggagga
       61 gatgaaaact accttgaact caatggctat aaactggcag cgggacgcaa cttctcagcc
      121 aacgatgtga acacgggaag agcggtggta gtactgggcg atgatgtggt gaataaatgt
      181 tttgggggca acgcagcaag agcgcttgac cggtttgtaa aaatcggtaa ccgcccttac
      241 ctggtaatcg gggtgctgca aaagaagggc gccagcgctt tccttaacct tgacaatgtt
      301 gccatcacta cttacaataa tatcaggcag gtagccacca atatcaacac ctttagtatt
      361 ggagtgatgg tgaatgatta caaattgctg gataatgccg agggtcaggc tacagggttg
      421 ttcagaaaca tccgcaaact tgatgtggcg gaacaggata atttttatat cgacaaaagc
      481 gatgcacttg ccgaaatgtt cattgggttt ttgagtggca tctctggtgc ggcgggtgtt
      541 attggtctta tcaccctgat tggcgcagcc atcgggttga tgaacatcat gttggttgcc
      601 gtgacggaac gtacaaagga agtagggctt accaaagcca ttggcgccac ccgcaaaaac
      661 atccgtcaac agtttctttt cgaatctatc attatcagtt tgctcggtgc ttctttcgga
      721 attgtgttgg gagtgctggt tggcaatgtt tttggtttga tcctgaagac aggatttgtg
      781 attccatggc tctgggtgct gttgggagtc attatctgtt ttgtcacagg gctgctggca
      841 gggttttacc cggcaaacaa agcttccaag ctcgatccga tagtggcgct ccgctacgaa
      901 taacattgca caggcatcgg cctgtcaggg cacttgcagt ttccagaatt gactgaaaga
      961 ggaaactgtt ttcaggatgg tttctttgct gaactcgtgt ccttcaaaag gatagtagtc
     1021 atacctgtaa ggcactttca actccttcag tttggtttcc atcatggtat ggttgctgga
     1081 aggtaccagc ggatccaggc caccgtaggc aaggtatacc gggggtgcag aagcggttac
     1141 ctggtacaaa gggctcaact gctgaaacag tgccgggtcc tgcgaaaatg ttttgcccaa
     1201 ataggcgatc atccaggatt gaaagatggc attgctcaca taaaaaggat cggtgagatt
     1261 ggtggggcca acaatggatg ccaccaactt aacctgcttc tccgtgtcga aagaaaatgc
     1321 gtaaagcatc cctaagtgtc cgccggcgct tacccccagc atggtatacg actgagagat
     1381 cttccattgc gccgattggg aattgagaaa ctggagcaag gttttcaaat cgttcatttg
     1441 agccggatga cgtgttgctt cagaaccatt ggcaagggta taattgatgt taacaaaagc
     1501 aacatttggc agggaggctt tcatcaacgg aatggagttg ttcaaatcat tcttatcgcc
     1561 gcccacccac gatccgccat ggatgagaat aatggttttg gtagaggcct ggctgcgatt
     1621 ggccggcaaa taaacgtcgg ctttttgaag agttccgctg ccatagctca cgtttttcag
     1681 ttccagtgct acggaagcat ttgatggatc actttcaaac tggtctttct tacaaccaat
     1741 gaaaatgatt cccatgagga gtacccccaa catacctgta tagcgcatac ccattattta
     1801 tgttgcttta acggatttga cacggcaatg ttgcgccggc cagccgggaa aaacaaaaaa
     1861 ccctttgcca ttgacaaagg gttttttggg tgtacagatc aaatggatca atcgttcttc
     1921 aaagcttttt caatcctgtc ctgcaggtct tgcaaatgca ctttcgaaga ctggtctgta
     1981 atggtcggca atgccgtcct gatttcagat tgcagggttc tcaattgata tttcgccact
     2041 gaaacgaggt ctgagttggc actgtttgaa cctccggtgc tgatggtgat tccaccgaat
     2101 gaaatattgg agggcgactc tcctggctta accacgctaa tcaacctttc tgtaacgtcc
     2161 ttttgcaggc tgcggcggta aatgtcgatt ggctttttgg cagccagttc gctgaacacg
     2221 cctttgcgca aatctgtcat catttccatc agggtgtatg cttcagccgg cttttcggct
     2281 tcgaagcgct gcaactttga aacggtgttg ccgctgaaca tggtaccaag cgccctgttt
     2341 tgcaagccgc taatcactga ttgcggagac tgattggtga ggctggtgta cttgccgtca
     2401 attacccatg ttggtgtttt gaaaacattt tcctgtatcc atttcatcga ctctttctgc
     2461 ctagcttttg cagtgaactc atatactgct cctggctgat ctgcggtttt tggtgtacgc
     2521 tcaataccgc caatactcct ggaaacatga ccgatgtatc ggccaaactg cccgatcacc
     2581 tggttgtaaa tggtctggta atcttcatag gcttcgccgg attttttggt ccactcgggc
     2641 aactgaggca gtatgcgctt caggttcttc acgccgtagt cgctggcttt gatggcattg
     2701 tcgccgaggt cttcagtttg cgaacgagga tcgtcgttgt agctttcgcc atcgccccac
     2761 cagttgcggg gattcttcaa tttttcaatg gtcagcttgt tc
//
LOCUS       DATIQF010000416         1800 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_67581, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000416 DATIQF010000000
VERSION     DATIQF010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1800
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67581"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..826)
                     /locus_tag="VLL95_06880"
     CDS             complement(<1..826)
                     /locus_tag="VLL95_06880"
                     /inference="COORDINATES: protein motif:HMM:NF012529.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA/Hda family protein"
                     /protein_id="HSR38623.1"
                     /translation="MTKTCDTVWQNCLEIIKDIVDWQHFKTWFEPITPVSIKNKVLTI
                     QVPSQFFYEYIEEHYVNLLAKTLKRELGKEARLEYRIMVDSGNNNHQPQTVDLPTSNI
                     KLYNNNVMDFPLVTTNPVKNPFVIPGLKKIQIDPQLNPTYTFESYIEGDCNRVARRAG
                     KTVADKPGSNSFNPLVIYGGVGLGKTHLAQSIGNEVKKQHPNKVVLYVSSEKFINQFQ
                     DHSRNNAINDFIHFYQLIDVLIIDDVQFFARAEKSQDAFFAIFNHLHQSGKQLVLTS"
     gene            complement(962..>1800)
                     /locus_tag="VLL95_06885"
     CDS             complement(962..>1800)
                     /locus_tag="VLL95_06885"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="metallophosphatase"
                     /protein_id="HSR38624.1"
                     /translation="RLVILHTNDVHSRLDPFPMDGSRNQGMGGVEARAALIASIRQQH
                     EHVLLLDAGDIFQGTPYFNVFKGEPELKAMAMMGYDACTMGNHDFDAGLENFATQVQQ
                     HANFPVIICNYDFTNTPMEHKYVPYKIFKKGRLKIGVLGVGIALKGLVPDNLFGSTVY
                     NDPIIKANETAYHLKYKEKCDLVICLSHLGYNYREGGKVSDKILAAASENIDLIIGGH
                     THTFMNEPEIIRNKKGSEVAINQVGWGGLILGRLDYTFSGVKKKNFFEARTIAIEKKT
                     SS"
BASE COUNT          430 a          401 c          428 g          541 t
ORIGIN      
        1 ctgaagtgag taccagttgc tttccgctct ggtgcaggtg attgaaaatg gcaaagaagg
       61 catcctgcga cttttcggcg cgggcaaaaa actggacgtc atcgatgatc aatacgtcaa
      121 tcaactggta gaaatgaatg aaatcgttga tggcgttgtt gcggctgtga tcctggaatt
      181 ggttgatgaa tttttcgctg ctcacgtaca gaaccacctt gttggggtgc tgcttcttta
      241 cctcgttgcc tatggattgg gcgaggtgcg tctttccaag gcctacccca ccataaatga
      301 ccaatggatt gaaagagttg gaaccgggct tatcagccac agtttttccc gcacggcggg
      361 ccacacggtt gcaatcaccc tcgatgtagc tttcgaatgt gtacgtagga ttcaactgcg
      421 gatcgatctg gatttttttc aatccaggaa tcacaaaggg attctttaca ggattagtgg
      481 tcaccaaagg aaaatccatt acgttgttat tgtataattt gatattgctg gtaggaagat
      541 caacggtctg gggctggtgg ttattgttgc cgctgtcaac catgatccga tattccagtc
      601 gggcttcttt tcccaactcc cgcttcagcg ttttggcgag caggtttaca taatgttctt
      661 cgatgtactc gtaaaaaaac tggctgggta cctggatggt gagtacttta ttcttgattg
      721 aaacaggtgt gatgggttcg aaccaggttt taaaatgttg ccagtcaact atgtccttta
      781 ttatttccag acaattttgc caaactgtat cgcaagtctt cgtcatttct tccaaaagca
      841 atttatgtag agttactaag attcgttgtt ggtaactcaa ttttgaggaa atcgcttcac
      901 ttctctcaaa attgaaacgg ctatggcgaa tatcaactct ttctgttgaa aaaaaaattt
      961 tttacgagga tgtttttttc tctatagcga ttgttctcgc ctcaaaaaaa tttttctttt
     1021 tcacgccgga aaacgtataa tccaaccggc ccaaaattaa gcctccccaa cccacctggt
     1081 tgatggctac ttcactgcct tttttgttgc ggattatttc gggttcgttc atgaaagtgt
     1141 gtgtatgtcc gccaatgatc aggtcaatat tttctgacgc tgccgccagg attttgtcgg
     1201 atacttttcc gccttcgcga tagttgtaac ccaggtggct caggcaaatc acgaggtcgc
     1261 atttttcttt gtacttcagg tggtatgcgg tttcgttggc tttgatgatg ggatcgttgt
     1321 aaaccgtgct gccaaagagg ttgtcaggta ccagcccttt caaagcgatg ccaactccca
     1381 gtacgccaat ctttaatctt cctttcttaa aaatcttata gggcacgtat ttgtgctcca
     1441 tgggtgtatt ggtgaaatcg tagttacaaa tgatcacagg aaagttggcg tgctgctgca
     1501 cctgggtggc aaagttctca aggccggcat caaagtcgtg gttgcccatg gtgcaggcat
     1561 cataacccat catggccatg gctttcaatt caggttcgcc cttgaaaaca ttaaagtagg
     1621 gtgtaccctg gaagatgtca ccggcatcga gcaacaggac atgctcatgc tgctgcctga
     1681 tgctggcaat gagggcagcc cttgcttcca cgccacccat gccctggttc cggctgccgt
     1741 ccatcggaaa tggatcaagc cggctgtgca catcattggt gtgtaaaata accaggcgct
//
LOCUS       DATIQF010000417         2579 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_37095, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000417 DATIQF010000000
VERSION     DATIQF010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37095"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1292)
                     /locus_tag="VLL95_06890"
     CDS             complement(<1..1292)
                     /locus_tag="VLL95_06890"
                     /inference="COORDINATES: protein motif:HMM:NF014513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HSR38625.1"
                     /translation="MWYRTGKFILQYRIPLMVILVLATAFMGWQASQVQLSYEFSKAI
                     PTDNPRYQEYLAFKSKFGEDGSVLVIGVEDPRFFEKAHFDAYRQMVADIKKVKGVEGI
                     MSVPAAINLRKSDSSEALLSGALFDSTVKTQAEIDSARALFENLLFYRGLLYNQNTNA
                     YLAGATINKGVLASKDRTRVVNEIVALTKTYTQSTSVQVHLSGLPLIRTQIADRIKNE
                     MNYFLIGSLALAAFTLILFFRSTSATLLSLFVVLFGVVWALGTMHLLGYKITLLNALI
                     PPLMIVIGIPNCIYFLNKYHMSWEEALAKEPQQLAPARVTELKREALLNMVGKMGVVT
                     LFCNIAAAVGFAVFALTESALLKEFGIVAGINIMVIFFISLIMIPVVLSYVQPPKERH
                     TRYLRNKFLENLLVRVEYWVLQRRKLVYAITGVVLVAAV"
     gene            1438..2175
                     /gene="recO"
                     /locus_tag="VLL95_06895"
     CDS             1438..2175
                     /gene="recO"
                     /locus_tag="VLL95_06895"
                     /inference="COORDINATES: protein motif:HMM:TIGR00613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HSR38626.1"
                     /translation="MLQTTQAIILRIVPYGDTSLIVSAFTQRYGIQQYMVKGARRTSK
                     KGSSQAPFLQPAAILELVVYHNELKQLQIIKEMRWAHVYSQVMQNISRNAIALYMVEL
                     LSKCLRQPEANDELFAFAAEQLQLLDSCDNSVAANLPLYFTLQLAAHLGFRMEDEYDA
                     SRPFLDLREGMFVSEPPIHGMYTDPQLSEVTHQLLQHDNAITLYRLKLNHQQRRALLQ
                     AYAHFFHYHVADFGQLKTLAVLQEVLG"
     gene            complement(2288..>2579)
                     /locus_tag="VLL95_06900"
     CDS             complement(2288..>2579)
                     /locus_tag="VLL95_06900"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HSR38627.1"
                     /translation="VSNGNVGDMDWTFAEIIERCSYGVALHGGAVIGSGTVGTGCFLE
                     LNGTGKLNDPNFVPQWLQDGDVVEMEIDGLGRLSNTIVAEDTDWSILGLKKG"
BASE COUNT          650 a          696 c          630 g          603 t
ORIGIN      
        1 accgctgcta ccaacactac gcctgttatg gcatacacca gttttctgcg ttgcagtacc
       61 cagtactcca ctctcaccag caggttctcc aaaaacttgt tgcgcaggta gcgggtgtgg
      121 cgctccttgg ggggctgcac ataactgagc accaccggta tcatgatgag cgaaatgaag
      181 aagatgacca tgatgttgat gcccgctaca atgccaaact ccttgagcaa cgcactctct
      241 gtgagtgcaa ataccgcaaa accaacagcg gcggcaatat tgcaaaagag ggtaaccact
      301 cccattttgc ccaccatgtt caacagcgct tcgcgtttca attcggttac ccgggcaggg
      361 gccagctgct gcggttcttt ggccagcgct tcctcccagc tcatgtggta tttgttgagg
      421 aaatagatgc agttgggaat accgatcacg atcatcaatg ggggaatcaa tgcattgagc
      481 agggtgatct tgtagcccag caggtgcatg gtgcccagcg cccataccac accgaataaa
      541 accacgaaca gcgatagcaa agtggcactg gtagagcgga agaaaagtat aagcgtgaaa
      601 gccgccaaag ccagcgaacc gatcaaaaag tagttcattt catttttgat gcggtcagcg
      661 atttgcgtac ggatgagggg cagcccactc aaatggacct gcacactggt gctttgggta
      721 tatgtcttag taagggctac aatttcattc accacccggg tgcgatcctt gctggccaac
      781 acccctttgt tgatggttgc gccggccagg tacgcgttgg tattttggtt gtacaacaag
      841 cctcggtaaa aaagcaggtt ctcaaacaag gcacgggcac tgtcgatttc tgcctgcgtt
      901 ttcacggtgc tgtcaaacag agctcctgac aacaatgctt cggagctatc acttttacga
      961 aggttgatgg cagcaggcac actcatgata ccctccactc ctttcacttt cttgatatcc
     1021 gccaccatct ggcgataggc atcaaaatgc gctttctcga agaacctcgg gtcttccact
     1081 ccaatcacaa gcacactgcc atcttctcca aacttgcttt tgaaagccag gtattcctgg
     1141 taacgggggt tatcggtagg aatggccttc gagaactcgt agctgagttg cacctggctg
     1201 gcctgccagc ccataaaggc ggtagccaac accagtatta ccattaatgg aatgcgatat
     1261 tgaagaataa acttgccggt gcgataccac ataaagtgct tatagaagta gggaatgggg
     1321 aatgatgggg ttgtgaacca cctcccgtaa cgcggcaaag aaagcaaatc atacccaata
     1381 gatggttgag gccggttagc atcggcttat tttcgcaatc ctttcggggt cttaccaatg
     1441 ttacaaacca cccaagccat catattgcga atagtgcctt acggcgacac cagcctgatt
     1501 gtgtctgcct tcacgcagcg ctatggcata cagcagtaca tggtgaaggg tgcccgccgc
     1561 accagcaaaa aaggaagcag ccaggctccc tttctacagc cggcggccat cctggagttg
     1621 gtggtgtacc acaacgaact gaagcaactg cagatcatca aggaaatgcg gtgggcgcat
     1681 gtgtacagcc aggtgatgca aaacatcagc cgcaacgcca ttgccctgta tatggtagag
     1741 cttttgtcca aatgcctgcg gcagcccgaa gccaacgatg aactgtttgc atttgccgca
     1801 gagcaactgc aattgctgga cagctgcgac aactcggtgg ccgccaacct gcctttgtat
     1861 ttcaccttgc agttagcggc tcatcttggt tttcgcatgg aagacgaata cgatgccagc
     1921 cgtccgttcc tcgatttgcg ggaaggtatg tttgtatccg agccgccgat tcacggcatg
     1981 tacaccgatc cgcaactgag tgaagtgaca caccaattgc tgcaacatga caatgccatc
     2041 accctatacc gtctcaaatt gaatcatcaa caacgcaggg ccttgttgca ggcatatgct
     2101 catttctttc attaccatgt agccgatttc gggcagctga aaacgctggc ggtactgcag
     2161 gaggtgctgg ggtgaggatt caatctttgc gtcttggcgt cttagcgaga aaacaatagc
     2221 acgcaaagac gcagagccgc aaagggaaat ttatgtttcc tcaccgggcg ggaaaatata
     2281 ttccaagcta ccccttcttc aatcccaata tgctccagtc ggtgtcttcc gctacaatgg
     2341 tattgctcag ccttcccaac ccgtctattt ccatttccac cacgtcgcca tcttgcagcc
     2401 attggggcac aaaattggga tcattgagtt tgccggtgcc attcaattcg agaaagcaac
     2461 cggtacctac tgtgccgctg ccaatcacag caccgccatg aagcgctacg ccatagctgc
     2521 accgctcaat gatctctgca aaggtccagt ccatatcgcc cacgttgccg ttgcttacc
//
LOCUS       DATIQF010000418         2697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_6884, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000418 DATIQF010000000
VERSION     DATIQF010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2697
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6884"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..273)
                     /locus_tag="VLL95_06905"
     CDS             complement(<1..273)
                     /locus_tag="VLL95_06905"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF017522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TylF/MycF/NovP-related O-methyltransferase"
                     /protein_id="HSR38628.1"
                     /translation="MVIRLANKLLAYAGLEIGKKEKPLDADLLADAHFMSLFRQVQPF
                     TMTSAERLYALHKAVIYTIEKGLPGAFVECGVWKGGSSMMIALTLKQ"
     gene            325..1050
                     /locus_tag="VLL95_06910"
     CDS             325..1050
                     /locus_tag="VLL95_06910"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSR38629.1"
                     /translation="MKSQPATGIVPDAFNPTITSPTWLTRRLLLAGVASMSGRFRGRL
                     LDFGCCAKPYKALFKVDEYVGVDFMGEGHDHSNEQIDFFYDGKTLPFDNTSFDGVFST
                     EVFEHIFNLPDMLQELHRVLKPGGLMLITCPFAICEHEQPNDFARYTSFAIRHLLEQH
                     GFDVLEQQKLGTAQEALWQMRITYWNLHIVEKAKDIPVLRQVLRWGFNVPANMLAWLC
                     NQLLPAANDLYLNNLVLAKKKAS"
     gene            1047..2204
                     /locus_tag="VLL95_06915"
     CDS             1047..2204
                     /locus_tag="VLL95_06915"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSR38630.1"
                     /translation="MKIGIISIIHEPWGGSEELWAAMAHDALDAGHQVVFCSYHFGST
                     HPKVQALQQKGLQLVPRMAYVPGSASGWMRKMKKALYWCLHKVRSPYAQLLSTQPDLL
                     FYNGTSLSILEDPHLQKHWQAFTGKKVILAHYLPEHNSVMPFSARIALQDFFKASQHA
                     LFVSQRTALVTQRTAALSNLSYSLVRNPVKIPDNNVVAWPQQTDITQLAMVGNLIAVH
                     KGQDVMLQLLGTDEWKQKAWHLNIYGDGMDKEYLQSLAQMYGIAGKVTFHGRVNDIRH
                     LWSQNHLLLMPSVMEGMPLAVVESMLCGRPVVATDVGGHAEWIDDNVNGFLAAASTVN
                     ELQDALERAWERRADWEHIGRLAHEKAMQLYDPTPGEKLLHLLEQVAGKKG"
     gene            2207..>2697
                     /gene="wecB"
                     /locus_tag="VLL95_06920"
     CDS             2207..>2697
                     /gene="wecB"
                     /locus_tag="VLL95_06920"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HSR38631.1"
                     /translation="MKKKLLFVFGTRPEAIKMAPLIKACQQQSAYFTPIVCLTAQHRQ
                     MLEQVIDFFELPVHDDLDLMKPNQTLYHITADALLGLQKVIDKHQPDLVLVQGDTTTA
                     FAGALAAFYAKVPVAHIEAGLRSGNNYSPFPEEVNRKLIGQIASWHFAPTQRAVDNLD
                     QKD"
BASE COUNT          673 a          661 c          712 g          651 t
ORIGIN      
        1 ctgtttcaat gtaagggcga tcatcatgct gctgccgcct ttccaaacac cgcattccac
       61 gaaggctccg ggcaatcctt tttcgatggt atagatcacg gctttgtgca gtgcgtacag
      121 gcgttcggca ctggtcatgg taaaaggctg tacctgccgg aacaatgaca tgaaatgggc
      181 atctgccagc agatcagcgt ccaacggttt ttcttttttg ccaatttcca gtcctgcgta
      241 cgccagtagt ttatttgcca gccttatgac catcctgtgt tgattatggc ggcaaattaa
      301 tggaatcgtt tagttttggc ccgcatgaaa tcgcaaccgg ctaccgggat tgttcccgat
      361 gcatttaacc ccactattac ttcgccaacc tggcttaccc ggcgcctgct gttagcgggg
      421 gtggcaagca tgtccggaag atttcgcggc cgactgctcg attttggatg ctgcgccaaa
      481 ccttacaagg ctttattcaa ggtggatgaa tacgtgggtg ttgacttcat gggagagggc
      541 cacgatcaca gcaatgagca gatcgacttt ttctacgatg gcaaaacgct gccgtttgac
      601 aatacatcgt tcgacggcgt tttctctacc gaagtatttg agcacatctt taacctgccc
      661 gatatgttgc aggaactgca ccgggttttg aagccgggtg gtttgatgct catcacttgt
      721 ccttttgcca tttgcgaaca cgagcagccc aacgattttg cccgctatac ttcttttgcc
      781 attcgtcacc tgctggagca gcatggattc gatgtgctgg aacagcaaaa gctgggcact
      841 gcccaggaag cgctctggca aatgcgcatt acctactgga accttcacat agtggaaaag
      901 gcaaaggaca taccggtact gcgacaagtt ttgcgctggg gctttaatgt gcctgccaat
      961 atgctggcat ggttgtgcaa tcaattgctg cccgccgcca atgatcttta cctgaataac
     1021 ctggtcctgg ccaaaaagaa agcatcgtga aaattggcat catatccata atacacgaac
     1081 cgtggggagg aagtgaggag ctatgggccg ccatggcgca tgatgccctg gatgccggtc
     1141 accaggtggt tttctgcagc taccattttg gatcaacaca tcccaaagtg caggcattgc
     1201 agcaaaaggg gctgcagttg gtgccaagaa tggcctacgt gccgggcagt gcctccggat
     1261 ggatgcgcaa aatgaaaaag gctttgtatt ggtgcctgca caaagtgagg agcccttacg
     1321 ctcaactgct gtccacccag cccgacctgt tgttttacaa cggcacgtcc ttgagtattt
     1381 tggaggaccc gcatttacaa aaacactggc aggcattcac cggcaaaaaa gtgatactgg
     1441 cgcattacct gccagagcac aactcggtaa tgccattttc cgcaagaata gcattgcagg
     1501 atttttttaa ggcatcgcag catgcattgt ttgtaagcca gcgtaccgct ttggtaacac
     1561 aacgcacagc tgcactatcg aatctttcct attcactggt caggaacccg gtcaaaattc
     1621 ctgacaacaa cgtggttgcc tggccgcaac aaaccgacat cacacagttg gcgatggttg
     1681 gcaatttgat agccgttcac aaagggcagg atgtgatgct gcaattattg ggcaccgatg
     1741 aatggaagca aaaggcctgg catctcaata tttacgggga cgggatggac aaagaatacc
     1801 tgcaatcatt ggctcagatg tacggcattg caggtaaagt gactttccat ggacgggtga
     1861 acgatattcg ccacttgtgg tcgcagaacc acttgctgct gatgccttct gtaatggaag
     1921 gcatgccgct ggcggtggta gaatccatgt tgtgtggaag gccggtagtg gccaccgatg
     1981 tgggcggcca tgccgagtgg attgatgaca acgtgaatgg ttttttggcc gcagccagca
     2041 ccgtgaacga attgcaggac gcattggaac gggcatggga acggagagcg gattgggaac
     2101 atattggaag actggcgcat gaaaaggcca tgcagttgta cgaccccacg ccaggggaaa
     2161 aattattgca tttgctggaa caagtggctg gcaaaaaagg atgaacatga agaagaaact
     2221 gttatttgta tttggtacca ggccggaagc cattaaaatg gcgccactca ttaaggcctg
     2281 ccagcagcaa tctgcatact ttacacccat tgtttgtctc accgcacagc atcgccagat
     2341 gctcgaacag gtgatcgatt tttttgagtt gccggtacac gatgacctgg atttaatgaa
     2401 acccaaccaa acgctgtacc acatcactgc tgatgcgtta ttgggattgc aaaaggtaat
     2461 tgacaaacac cagccagacc tggtgctggt gcagggtgat accaccactg cctttgccgg
     2521 ggcgctggcg gctttctatg ccaaggtgcc cgtggcacac attgaagctg gattgcgcag
     2581 cggcaacaat tactctccct tcccggaaga agtgaaccgt aaactgattg gacaaattgc
     2641 gagctggcat tttgcaccca cccagcgggc cgtggacaac ctggatcaga aagatat
//
LOCUS       DATIQF010000419         2064 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_113435,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000419 DATIQF010000000
VERSION     DATIQF010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2064
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113435"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..522
                     /locus_tag="VLL95_06925"
     CDS             <1..522
                     /locus_tag="VLL95_06925"
                     /inference="COORDINATES: protein motif:HMM:NF012783.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HSR38632.1"
                     /translation="DKKFIEQRKLFLWGVVEDKSAKDITSRLLYLDAIDPGKEITFYI
                     NSPGGLVTAGMVIYDTMQLISSPVSTVCMGMAASMGSILLSGGKKGKRFIFPSGEVMI
                     HQPSGGGRGTSADLEIMAEQIRKTKLMGAEILAKNCGQTVEKVMKDFDRDYWMDAKES
                     IAYGIVDAVIKKL"
     gene            611..1852
                     /gene="clpX"
                     /locus_tag="VLL95_06930"
     CDS             611..1852
                     /gene="clpX"
                     /locus_tag="VLL95_06930"
                     /inference="COORDINATES: protein motif:HMM:NF003745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HSR38633.1"
                     /translation="MAKSILHCSFCGKSRDEVKILIAGQDNVHICDQCVESAQEIVEQ
                     EVAMQSHRFTAPGAFKLNVKKPREIKQFLDQYVIGQDYAKKILSVAVYNHYKRLTQKV
                     SADEVEIEKSNIILVGETGTGKTLLAKTIARLLNVPFAIVDATVFTEAGYVGEDVESM
                     LTRLLQNCDYDVQAAERGIVYIDEIDKIARKGDNPSITRDVSGEGVQQGLLKMLEGTE
                     VLVPPQGGRKHPEQKMIKVNTQNILFIAGGAFDGIDKVIARRVNTNAIGFNVNKELQE
                     YQKKNLLQFINAQDLKGFGLIPELLGRLPVVTHLDPLDTETLRSILTEPKNSLIRQYN
                     KLFELDGIQLSFEPEVFDYIVQKAMEFKLGARGLRSICEQILTDAMFELPSMKEKSFE
                     VTLEYARNKFDNSKMSKLKVA"
BASE COUNT          556 a          521 c          560 g          427 t
ORIGIN      
        1 gacaagaaat tcattgagca acgcaagttg ttcctgtggg gtgtagtaga agacaagagc
       61 gccaaagaca ttaccagtcg cctgctttac ctcgatgcca ttgatccggg caaggagatc
      121 actttttaca tcaacagccc gggtggtttg gtgacggctg gtatggtcat ttacgatacc
      181 atgcagctca tcagcagccc ggtaagcacc gtgtgcatgg gcatggccgc cagcatgggc
      241 agcatcctgc tgagcggggg caaaaaaggc aagcgcttca tttttcccag tggtgaagta
      301 atgatccacc agcccagtgg cggtggccgc ggcaccagcg ccgacctcga gatcatggcc
      361 gagcagatcc gcaagaccaa gctgatgggc gccgagatac tggccaaaaa ctgtggccag
      421 accgtggaga aagtgatgaa agattttgac cgcgactact ggatggatgc gaaggaaagc
      481 attgcctacg gcattgtgga cgccgtgatc aagaagcttt aacgggcaat atttgccgtt
      541 cacgatcgtt caggttactt ttgtgagcct tgtgccccgt tagcacaggg cttttttatc
      601 aaaccgtaat atggccaagt cgattctaca ttgttctttc tgtggcaaaa gccgcgatga
      661 agtcaagatc ctcatcgccg gccaggacaa cgtgcacatc tgcgaccagt gcgtggaaag
      721 tgcccaggaa attgtggaac aggaggtggc catgcaaagc catcgtttca ctgcccccgg
      781 tgccttcaag ctgaacgtga agaagcccag ggagatcaag cagttcctcg accagtatgt
      841 gattgggcag gactatgcca agaagatcct cagcgtagcg gtttacaacc actacaagcg
      901 ccttacccaa aaagtgagtg ccgacgaggt ggagattgaa aaaagcaaca tcatcctggt
      961 aggcgaaacc ggtaccggca agaccctgct ggccaaaacc attgcccgcc tgctgaacgt
     1021 accctttgcc attgtggatg ccacggtgtt taccgaagcc ggctatgtgg gcgaagacgt
     1081 ggaaagcatg ctgacccgcc tgctgcaaaa ctgcgactac gatgtgcagg cagcggaacg
     1141 tggcattgta tacattgatg agatcgacaa gattgcccgc aaaggcgaca accccagcat
     1201 cacccgcgat gtgagtggtg aaggggtgca acagggcctg ctgaaaatgc tggaaggcac
     1261 cgaagtgctg gtgccgccac agggtggacg caagcacccc gagcagaaga tgatcaaggt
     1321 gaacacgcag aacatcctgt tcattgccgg tggcgctttt gatggcattg acaaagtgat
     1381 tgcccgccgg gtaaacacca acgccattgg tttcaacgta aacaaagagt tgcaggaata
     1441 ccagaagaaa aacctgttgc agttcatcaa tgcgcaggat ctgaaaggct ttggcctgat
     1501 tcccgaattg ctgggccgac tgccggtggt gacccacctc gatccgctgg ataccgaaac
     1561 cctgcgcagc atcctcaccg agccgaagaa ctccctcatt cgccagtaca acaaactgtt
     1621 tgaactggat ggcattcaac tcagctttga gcccgaagtg tttgactaca tcgtacaaaa
     1681 agccatggag ttcaaattgg gcgcccgtgg attgcgcagc atttgcgagc agatcctcac
     1741 cgatgccatg ttcgaactgc cgagtatgaa ggaaaagtca tttgaagtga cgctggaata
     1801 tgctcgcaac aagtttgaca acagcaagat gagcaaactg aaagtggcct gataaaggtt
     1861 cgcttaccca atcataacag aaagcttcgc tctggcgagg cttttttgtt ggtggttgcg
     1921 ccaaagccat cttactttgg aacgtagaaa agattccact cgtcaactaa aaattaccca
     1981 tatgaatgaa ctgctgaaca aactcgtcag tgaagccggg cttacccctg aacaggctgc
     2041 caaaacactg gaagtgatca agag
//
LOCUS       DATIQF010000420         2734 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_295795,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000420 DATIQF010000000
VERSION     DATIQF010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2734
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295795"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(9..368)
                     /locus_tag="VLL95_06935"
     CDS             complement(9..368)
                     /locus_tag="VLL95_06935"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSR38634.1"
                     /translation="MNEKFVARIKAELTEIEAAGLFKKERIITTPQGAEIEVLVPDGN
                     GGHKHVLNFCANNYLGLSSHPKVIEAAHKAIDSHGYGMSSVRFICGTQDIHKELEHKI
                     AQFRAQKMCRKVITSAK"
     gene            644..844
                     /locus_tag="VLL95_06940"
     CDS             644..844
                     /locus_tag="VLL95_06940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38635.1"
                     /translation="MKKITAKTGMLLTLLLVSAMLVFGFVSNNKSSQADDCSATEKSS
                     SGEVQSKLNLKGMTRHLLDFYK"
     gene            complement(942..1781)
                     /locus_tag="VLL95_06945"
     CDS             complement(942..1781)
                     /locus_tag="VLL95_06945"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HSR38636.1"
                     /translation="MKYIARIEAPEELEEGVEANAVGSVVHKLMELLYDEWMNKNGNR
                     ITAEAIAWMQQEKESWIEQAFRLAWRRKEMKGNFQFSGELHIVRAIVLEFVDKLLQLD
                     AAYAPFTLHQTEIKLAQPFGLPIEGRMQRVMLSGYVDRIDEKDGLYRMADYKTGADNP
                     VFQNLDALFEREGKKHNKAALQTLIYSWMFHKQFPEHSRFEPALLAVRHLQQNEGQIQ
                     LKCKDDDSDVTAGNIDTVLGELEPRLRQLLQELFDPAVPFDQTSIADHCKYCDFAGIC
                     GRK"
     gene            complement(1788..>2734)
                     /locus_tag="VLL95_06950"
     CDS             complement(1788..>2734)
                     /locus_tag="VLL95_06950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38637.1"
                     /translation="YALFRLFFEVQHDLHKHRYQSVHHSLAGKWMQHPFCSWSQEAIE
                     KLQARMQQENLVQVPAGLLADHSEMASLLFSRMMADMELFQRLRRMLELALELPSVKS
                     DSLLQGLCVASWKSLQQLEPLFASLRPTPELDFMGSLLLKQMGSISVPFEGEPLEGVQ
                     IMGLLESRGLYFDHLVILGANEGSLPRIKPPDSFLPDNVRRAFGLPVPEHQDAIFAYV
                     FYRLLHRSQSMQLVYNALVTDNSTGEVSRFVKQLDYETKIPIRHQKISLPVTPQAWPS
                     ISIAKSKEVMNRLFVYFKPDDPQTISPSAINTYLNCRL"
BASE COUNT          649 a          680 c          693 g          712 t
ORIGIN      
        1 cgatctacct attttgccga cgttattact tttctgcaca ttttttgtgc acggaattgg
       61 gcaatcttgt gttccagttc tttatggatg tcctgtgtgc cgcagataaa acgcactgag
      121 ctcatgccat agccatggga atcaatggct ttgtgggccg cttcaatcac tttgggatgg
      181 ctggaaagcc cgaggtagtt gttggcgcaa aagttcagaa cgtgcttgtg gccaccgttg
      241 ccatcgggca ccagcacttc tatttcggcg ccctgggggg tggtaatgat gcgttctttt
      301 ttgaaaaggc cggcggcttc aatttcagtg agctcggctt tgatgcgggc tacaaatttt
      361 tcgttcatat tcaggcaaga ttttgatccg gttgaggcag cgaaggtaac gccggcatcg
      421 tcatggcggc atgcccgggc gaaacgattt tgccgaagaa acagccgttt ttaccgatag
      481 cggctttgcg gtggccgaaa accatttaac cggccggcgg ggcagtggta gtttcgtgga
      541 aacgttaagt atcgttaaaa gcagataaat gatgcaaaat ttacacgggc ctgtaacctt
      601 ttcaaaatat cttcgtctta tacatcatta cacactccct gtcatgaaaa aaataactgc
      661 taagaccgga atgttactca ccctgctgtt ggtatcagcc atgctggtat ttgggtttgt
      721 atcgaacaat aaaagcagcc aggccgatga ctgctctgct acagaaaaaa gcagttccgg
      781 tgaggtgcaa agcaagctga acctgaaagg gatgacgcgg cacctgctgg atttttataa
      841 ataggcaaaa aggacaagat gcaccgttga agtatccggg catcttgata cctgaagcca
      901 aatggatgac caaagcgaaa gctttggttt tttgttgccc gttacttcct gccgcaaata
      961 ccggcaaagt cgcaatactt gcaatggtcc gcaatgctgg tttggtcaaa aggaacggca
     1021 ggatcaaaca gctcctgtag caactggcgc agccggggtt ccagttcccc cagcaccgtg
     1081 tcgatatttc ctgcggtcac atcgctgtcg tcgtccttgc atttcaattg tatctgccct
     1141 tcattttgct gcaaatgcct cacggcaagc agggccggct caaatcggga atgctccggg
     1201 aattgcttgt ggaacatcca gctgtaaatg agcgtttgca aggctgcttt attgtgcttc
     1261 tttccctccc tttcaaacag tgcatccaaa ttctgaaaaa ccgggttgtc ggcccccgtt
     1321 ttataatcgg ccatccggta caagccatct ttttcatcta ttctgtccac atagccactc
     1381 agcatcaccc gttgcatcct gccttctatc ggcaatccaa atggctgggc cagtttgatt
     1441 tcagtttgat gcaatgtgaa aggggcatag gcggcatcca gttgcagcag cttgtctaca
     1501 aattccagca cgatcgctct cacaatatgc agttcgccac tgaattgaaa gttgcctttc
     1561 atttccttgc gccgccaggc cagtcgaaat gcctgctcaa tccaggattc tttttcctgc
     1621 tgcatccagg caatggcttc ggcggtaatt cgattgccgt ttttattcat ccattcatcg
     1681 tacaacaatt ccatcagttt gtgcaccacg ctgcctactg cattggcttc cacgccttct
     1741 tccagttctt ccggcgcttc aatgcgggca atgtatttca ggaaaaacta aagccggcag
     1801 ttgagatagg tgttgatggc agaaggtgaa atggtttgcg gatcgtcggg tttgaaataa
     1861 acaaacaaac ggttcatcac ctccttcgat ttggcgatgg aaatggaagg ccaggcctgc
     1921 ggcgtcactg gcaggctgat tttctggtgc cggatgggta ttttggtttc gtaatccagt
     1981 tgctttacaa agcgactcac ctcgccggtg ctgttgtcgg ttaccagcgc attgtacacc
     2041 agttgcatgc tttgcgaccg gtgcagcaag cgatagaaca cgtaagcgaa aatggcgtcc
     2101 tggtgttcag gtaccggcag gccaaaggca cggcgtacat tgtcaggcag aaatgaatcg
     2161 ggtggtttaa tgcggggtag gctgccttca ttggcaccaa gaataaccag gtgatcaaag
     2221 tagagaccac ggctttcgag caagcccatg atctgcacac cttccagcgg ctcgccttca
     2281 aagggtacgc taatgctgcc catttgtttc agcagcaggc tgcccatgaa gtccagctcg
     2341 ggagtaggcc ggagtgaagc aaaaagcggt tccaattgtt gcaggctttt ccaactggcc
     2401 acgcataatc cctgcagcag gctgtccgat tttaccgaag gaagttcaag ggccaattcc
     2461 agcatgcgcc tcagtcgctg aaacagttcc atgtcggcca tcatgcggct gaagagcagc
     2521 gaggccattt cagagtgatc ggccagtaat ccagcaggca cctgcacaag attttcctgt
     2581 tgcatgcgtg cctgcagttt ctctatggct tcctgcgacc agctgcaaaa aggatgctgc
     2641 atccatttac ccgccaggct gtgatgtaca gattggtaac gatgcttgtg caggtcatgt
     2701 tgcacctcaa agaacaagcg aaagagcgca taca
//
LOCUS       DATIQF010000421         1790 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_113463,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000421 DATIQF010000000
VERSION     DATIQF010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113463"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..557
                     /locus_tag="VLL95_06955"
     CDS             <1..557
                     /locus_tag="VLL95_06955"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSR38638.1"
                     /translation="HGFISKVPVNRGRYVNATEILAELVDPGDIHASLTVFEKDIPRI
                     KQGQHVTISLVANPAESAPGDVLLVTRNLDEKRTGLVHCHFDKYSSAFVPGMAVSATI
                     ELEKAMLPVVPESALLLFKGKHYVFVETKPNAFRLTEVIPGEKENGLISLTNNNLDWK
                     NAKVVSNGAFQLLGSIMSSEEEAQ"
     gene            924..>1790
                     /locus_tag="VLL95_06960"
     CDS             924..>1790
                     /locus_tag="VLL95_06960"
                     /inference="COORDINATES: protein motif:HMM:NF019135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HSR38639.1"
                     /translation="MRLICNILVLICCCLFTSAQEFNYVHYDTKDGLAGTTVYCMCED
                     EDGFKWFGTENGLSRFDGTRFVNFTVADGLPDNEVLELLGDNKGRVWISTFSKQLCYY
                     YKGKIHNAQNTPWLQKFELQGPVTKIASDNRGNLIFSDYFNLYWLDTNDSLNNLNETP
                     LFKKYLFRGHFVSDFDHDDNLILSTWDSIFTYKDGILKKVDLKRIPQASSGQFALFSG
                     IGSPTVKLPEPNVLQKLTVSNHRTIYLATSNGAWAVDTSANKLGQHFLPGMVVSDVIM
                     GDEKNIWFATMGN"
BASE COUNT          502 a          413 c          398 g          477 t
ORIGIN      
        1 ttcatggatt tatcagcaag gtaccggtga accgggggcg ctatgtgaat gctacagaaa
       61 tactggccga attagtggat cccggcgaca tccacgcctc actgactgta tttgaaaaag
      121 atatacccag gatcaagcag gggcaacatg ttaccatttc tttggtggcc aaccccgctg
      181 agagtgcacc cggcgacgtg ctgctagtaa caaggaacct ggatgaaaaa cggactggcc
      241 tggttcattg ccattttgac aaatacagtt cagcgttcgt tccggggatg gcggtgtcag
      301 ctaccatcga gttggaaaag gcaatgcttc ctgtagtgcc tgaaagcgca ttgttactat
      361 tcaaaggcaa gcattacgtt tttgtggaaa ccaaacccaa tgcttttcgc ctgactgaag
      421 tgatacccgg ggaaaaggaa aatggtttga tctcactcac gaataacaat ctggattgga
      481 aaaacgcaaa ggtggttagc aacggggcct ttcaattgct gggaagcatt atgagctcgg
      541 aggaggaagc ccaataaggc atagggtgcc tggtcatttg ccatagtggg tggcatgcgc
      601 acttatggac ccaacgtgca cacttgtgaa ttggccccaa accgcaagga aactacaggc
      661 tattttcgct ttaataacca tttagcctat cctaaaacga gtttatttgg ttaccccacc
      721 caccatttaa acacactcta ctccattttc tatttaccct cacctggttt ttgtcaatta
      781 cgactgtttc acatcacgct ccggccggat ttcgactccg gccttttttt atgcctgcca
      841 ttcaacggct tgaaatctgc taagcaagaa gcgcctgaac caagtttcct taaattcacc
      901 ctgtcgttat gcggtttagt tatatgcgcc ttatttgcaa tattctcgtt ctaatctgtt
      961 gctgtctttt cacgtcggca caagaattca attatgtcca ttacgatacc aaagatggcc
     1021 tggcaggtac gaccgtatat tgtatgtgtg aagacgagga tggctttaaa tggtttggta
     1081 ctgaaaatgg attgagccgc ttcgacggaa caaggttcgt aaattttact gtcgcagatg
     1141 gattgcccga taatgaagtg ctggagcttt tgggagacaa caaaggacgg gtatggattt
     1201 cgacattttc taaacaactg tgctactact acaagggaaa gatccacaat gcacaaaaca
     1261 ccccctggtt acaaaaattt gaactgcaag gccctgttac caaaatagct tctgataaca
     1321 ggggaaacct gatattcagt gactacttca atttatattg gctggatact aatgacagtc
     1381 tgaacaacct gaacgaaacc ccactattta aaaagtattt attcaggggg cattttgtgt
     1441 ccgattttga ccatgatgac aacctcatcc tttcgacatg ggactccatc tttacctata
     1501 aagacggaat tctaaagaaa gtagatttga aaagaatacc tcaagcttct tccggacagt
     1561 ttgcattgtt cagcggtatc ggttcaccaa ccgtcaaact gcccgaaccc aatgtacttc
     1621 aaaaattaac cgtgtcaaac caccgaacaa tttacctggc caccagcaat ggcgcctggg
     1681 cagttgacac ctctgccaat aaactggggc agcatttcct gcccggcatg gttgtttctg
     1741 acgtaataat gggcgatgaa aaaaatatct ggttcgccac catgggaaac
//
LOCUS       DATIQF010000422         2704 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_235169,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000422 DATIQF010000000
VERSION     DATIQF010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2704
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235169"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2640
                     /locus_tag="VLL95_06965"
     CDS             <1..2640
                     /locus_tag="VLL95_06965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38640.1"
                     /translation="LHANCKLSALQYETTEHPIRLKGFNDILVELDIDANAGDLNSGK
                     IFQVLSFVSAGRLTKATVECRFAPWHLASKKIPGFHDLIKPTSIIEPGGVKLLSISGN
                     TSQSVDIPADALYRAIRNPLYANIEISYREQEGSALKKTLLEDIPVKVWYRSDEDRKA
                     ITIPLLRQLVEDNSASGIASRYVMQLKKAAAVLEVVAQTAHAHRNLAEDYCSISTVPI
                     CDVALCADIEMAPDADIEAVLGQAYWQIEQYFNPTVPFYSLQQLLDQQMPVEEIFNGP
                     PLQHGFVLNEDLDKAFIRTALHSSDVINILMDIKGIVAVKNIALARYNAQGKLVESQP
                     WTLKIPAGQQPRLYVHASKVLVFKNDLPFLPDADELNDTLQLWKGQNRQNKLLKPEND
                     LTIPEGKYANTGEQWPLQNMLPDTYGVGINGLPEIASTERKAQARQLKAYMLVLEHLL
                     QVYILQLQHFRELFSIDASISQTWFAHLFTDAELNEAPLLYQPGLSEPALQELLESHP
                     QFVERRNRFLDHLLARFSENFADYALHVYTLYGNETKAGEVLIADKIRFLQKFPEVSA
                     NRARAFNYKNPLLVCQPGNEAGLQQRIRLLLGLNGVEGFVQYEVNWTVADNWLGSWKL
                     VDDKGNLLLQSPMAKGLYAESTLRTQLVNGAAAAVTALASPANLSTVAAGTKFKVQLT
                     DGTQSLATAGPFETSADADSHISAIQAFLQSMALAQKVFIVEHLLLRPRNKPSSAFPT
                     GDALLPICIGPDCHLCGEEDPYSFRLTIVLNGEQSFGLANQGIAFRRYAEKAIRMEVP
                     AHLGVKICWVSAEQLTAFEQLWCAWLSELAKPKPDANALHERHKELLALFEKLKSVYP
                     PASLHDCVDGDDENRVYLNNTVI"
BASE COUNT          727 a          728 c          656 g          593 t
ORIGIN      
        1 ttgcatgcca attgcaagct gagcgccttg caatacgaaa ccaccgaaca tcccatccgg
       61 ctcaaaggtt tcaacgacat actggtggaa ctggacattg atgccaacgc cggtgacctc
      121 aatagcggca agatattcca ggtactcagt tttgtgtcag cgggcaggct caccaaagcc
      181 acggtagaat gcaggttcgc tccctggcac ctggcatcga aaaaaattcc aggcttccac
      241 gatctcataa aacccaccag catcatagag cccggagggg taaaactcct ttccatttcg
      301 ggcaacacat cccaaagcgt agatatcccg gccgatgcat tataccgggc gattcgcaat
      361 ccactgtacg ccaatatcga gatcagctac cgggagcagg aaggcagcgc tttgaaaaag
      421 actttgctgg aagatattcc cgtgaaagta tggtaccgca gcgacgaaga ccgcaaagcg
      481 atcaccatac ctctgctgcg ccaactggta gaagacaaca gtgcatcagg cattgccagc
      541 cgatacgtaa tgcaactgaa aaaagccgct gcggttttgg aagtggtggc ccaaacggcg
      601 cacgcccatc gcaacctggc cgaagactat tgcagcatca gcacggttcc catctgtgat
      661 gtggcacttt gtgcagacat tgagatggca ccggatgcag acattgaagc cgtgcttgga
      721 caggcctact ggcaaataga gcaatacttc aatcccactg ttccttttta ttccttgcag
      781 caattgctgg atcagcaaat gccggtagaa gagatattca acgggccccc attgcagcat
      841 ggctttgtgc tcaatgaaga tttagacaaa gcattcatcc gcaccgcact ccacagctct
      901 gatgtcatca acatcctgat ggatataaaa gggatcgttg ctgtcaaaaa cattgccctt
      961 gcccgctaca atgcacaagg caagttggtg gaatcgcaac cgtggacact taaaatacca
     1021 gccggacaac aaccccgttt gtatgtgcat gccagcaaag tattggtatt caaaaatgat
     1081 ctgccttttc tgccagacgc cgatgaactc aatgacactt tgcaattgtg gaaaggtcag
     1141 aacaggcaaa acaaattgct gaagccggag aatgacctga ccataccgga aggcaaatat
     1201 gcgaacaccg gcgaacaatg gccattgcaa aatatgctgc ctgacaccta tggcgttggc
     1261 atcaacggat taccggaaat agccagtact gaaagaaaag cgcaggcccg gcaattgaaa
     1321 gcttatatgc tggtgctgga gcacctgctg caggtataca ttctgcagct gcagcatttc
     1381 agagaattgt tcagcattga tgcatccatc tcgcaaacat ggtttgcaca cctgttcaca
     1441 gatgccgaac tgaatgaagc ccccttgctg taccagcccg ggctgtcaga acctgccctg
     1501 caggaattgc tggaaagcca tccccagttt gtggagcgac gcaaccggtt cctcgatcac
     1561 ctgctggccc gcttttctga aaactttgct gattatgcct tgcatgtata cactttgtat
     1621 ggcaatgaaa ccaaagcagg cgaagtgctg atagctgaca agatccggtt tctccaaaaa
     1681 ttcccggaag tgtccgccaa ccgtgccagg gctttcaatt acaaaaaccc actgctggta
     1741 tgccagcccg gcaacgaagc cggactgcaa cagcgcatca ggctgctgct gggactgaat
     1801 ggtgtggaag gttttgtgca atacgaagtg aactggaccg tagcagacaa ttggctcgga
     1861 tcctggaaac tggtggacga caagggcaac ctgttgctgc aatcgcccat ggccaaggga
     1921 ttgtatgctg aatcaaccct gcgcacccaa ctggtaaatg gcgcagcggc agcagtgacc
     1981 gcattggcct caccggccaa cctcagcact gttgcggccg gcaccaaatt caaggtgcaa
     2041 ctcactgatg gtacccaatc actcgctacc gccggcccat ttgaaaccag tgcagatgcc
     2101 gatagtcaca tttcagccat acaggcattt ctgcaaagta tggcgctggc gcaaaaagtc
     2161 ttcatagtag agcacctgtt gttacgaccg cgtaacaagc cttcatccgc attccccacc
     2221 ggagatgctt tgctgcccat ttgtatcggg cccgactgcc atctctgtgg tgaagaagat
     2281 ccttattcct ttcgcctcac cattgtgctc aacggcgaac agtcgtttgg cctggccaac
     2341 cagggcattg ctttcaggcg ctacgctgaa aaagctatcc gcatggaagt gcctgcccat
     2401 ttgggcgtaa agatctgctg ggtaagcgct gaacagttga ctgcctttga gcaattgtgg
     2461 tgtgcctggc tcagcgaact ggcaaaaccc aaaccggatg ccaatgccct gcacgaacgg
     2521 cacaaagaac tgttggcatt atttgaaaaa ctgaaaagtg tttatcctcc ggccagcctg
     2581 cacgattgtg tagatggcga tgatgaaaat cgtgtgtacc tcaacaatac cgtgatctaa
     2641 aaacctttca cttatgtatc ccaccaatcc tgcacgatac ccggaatttg tagctgacca
     2701 ggtt
//
LOCUS       DATIQF010000423         2464 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_113506,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000423 DATIQF010000000
VERSION     DATIQF010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2464)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2464
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113506"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            219..2369
                     /locus_tag="VLL95_06970"
     CDS             219..2369
                     /locus_tag="VLL95_06970"
                     /inference="COORDINATES: protein motif:HMM:NF021942.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S46 family peptidase"
                     /protein_id="HSR38641.1"
                     /translation="MKKLFVSIGLLLSLAAFADEGMWLPYLVGQQKYADMKAKGLKLT
                     AEQIYSINKSSIKDAIILFGSGCTGEIVSAEGLIFTNHHCGYGAIASASTMERNYLRD
                     GFYAKTKAEEIASPGLSVQFLVRIDDVTPQVLDSMKGLKWNEWEAKKNRVFMAIAKKA
                     TEGTGYEARVYSMFKDNQFILYTYERYTDIRLVGTPPESVGKFGGDTDNWEWPRHTGD
                     FSIFRVYTGKDGKPAPYSQDNVPLKAKSFLPISLKGIKEGDFSMILGYPGSTNRFETS
                     YGVKLATDIKNPAFVQMRDIRLKAMFEEMKKDPAVKLKLASGFASLANYWKFYDGETK
                     QLLKYDVYGTKKAQEDALNAWIKQNNKSEYANIFSGYEKAYQAWQPYAKHKEYYEQGI
                     TGPAVIKFANMMTAAERILTKGGGDINKAMADLDKARTAMLAGLNKPSEQQMLGQLVQ
                     AFHKGIAADQQPVLFYNLMKQTFGPLSDDNTFKTWAASAFANSLILDDAKWNAFKANP
                     DAGTLQNDPLYYTARAFRENWAKFQPQLDAFNTALGELGHLYLKAYREANAKKVMYPD
                     ANLSMRLSYGQVKAYKPRDAVRYDYVTTAAGLLEKYKPGDYEFDLPARQIELLKKKDF
                     GQYIDPVRKDLVVAFITTDDITGGNSGSPVINGSGQLIGLAFDGNYEALSHKINFDKD
                     LCRTICVDIRYVLWCIDKLGGASNIISELKLVKQ"
BASE COUNT          674 a          756 c          582 g          452 t
ORIGIN      
        1 gtcccaatca aaatctgcga aaacccgctc attcggcatc atccgcgtcc catcctttct
       61 caccaacctg aaaacaacaa caaacgaaaa acaaaaaaca aaaaaccctc cgttttctct
      121 gtcctaagtc attttctgcc cctttgcttt aacggaaatt gcagcccgca caacgggcat
      181 ttcccctacg tttgtgcccg caaaaattga atgctcctat gaagaaatta tttgtatcga
      241 tcggcttgct gctgagcctg gccgcttttg ccgatgaagg catgtggctc ccttacctgg
      301 ttggccagca gaagtatgcc gacatgaaag ccaaaggact gaaactgact gcagaacaga
      361 tctacagcat caacaaaagc tccatcaaag acgccatcat cctgtttggc agcgggtgca
      421 ccggcgagat cgtgagtgcc gaagggctca tcttcaccaa ccaccactgc ggctatggcg
      481 ccatcgcctc ggccagtacc atggaacgca actacctccg cgacggcttc tatgccaaaa
      541 ccaaggcgga agaaattgct tcccccggct tgtctgtaca gttcctggtg cgcatcgatg
      601 atgtgactcc ccaggtgctc gacagcatga aaggattgaa atggaatgaa tgggaagcaa
      661 agaagaaccg cgtcttcatg gccattgcca aaaaagccac cgaaggcacc ggctacgaag
      721 cccgggtata ttccatgttc aaagacaacc agttcatcct atacacctat gagcggtaca
      781 ccgacatccg cctcgtaggc actccgcccg aaagcgtggg caagtttggc ggcgataccg
      841 acaactggga atggccccgc cacaccggcg atttcagcat cttccgcgtt tacaccggca
      901 aagacggcaa acctgctcct tacagccagg acaatgtgcc actcaaagca aaatcctttc
      961 tgcccatcag ccttaaaggc atcaaggagg gcgacttcag catgatcctg ggctatcccg
     1021 gcagcaccaa ccgcttcgaa acctcctatg gcgtaaagct ggctaccgat atcaagaacc
     1081 ccgccttcgt gcagatgcgt gacatcaggc tgaaagccat gtttgaggaa atgaaaaagg
     1141 accccgcggt gaaactgaag ctcgccagcg gttttgccag cctcgccaat tactggaaat
     1201 tttacgacgg cgaaaccaaa cagctgctga aatacgacgt gtatggcacc aagaaggcgc
     1261 aggaagacgc cctcaatgcc tggatcaaac aaaacaacaa gagcgaatac gccaacatct
     1321 tcagcggcta cgaaaaagcc taccaggcct ggcagcccta tgccaagcac aaagagtatt
     1381 atgagcaagg catcacaggt cctgccgtca tcaaatttgc caacatgatg accgcggccg
     1441 aacgcatttt gaccaaaggc ggcggcgaca tcaacaaggc aatggccgat ctcgacaaag
     1501 cccgcacagc catgctggcc ggcctcaaca agcccagcga gcagcaaatg ctgggacagc
     1561 tggtgcaagc cttccacaaa ggcattgcgg ccgatcagca gccggtcctg ttctacaacc
     1621 tcatgaagca gacctttggc ccgctcagcg acgacaatac cttcaaaacc tgggccgcct
     1681 ccgcctttgc caacagcctg atcctcgacg acgccaaatg gaatgctttc aaggccaacc
     1741 ccgatgcggg cacgctgcag aatgatccct tgtattacac ggccagggcc ttccgcgaaa
     1801 actgggccaa attccagccg cagctcgatg ccttcaatac cgccctcggc gaactgggcc
     1861 acctctacct caaagcctat cgcgaagcga atgccaaaaa agtgatgtac cccgatgcca
     1921 acctgagcat gcgcctcagc tacggacagg tgaaagccta caagccccgc gatgccgtac
     1981 gctacgatta tgtgaccacc gcggcgggcc tgctggaaaa atacaagccc ggcgactatg
     2041 aattcgacct gccggcaagg cagattgaac tgctgaagaa aaaagacttt ggccagtaca
     2101 tcgacccggt gcgcaaagac ctcgtggtcg ctttcatcac caccgacgac atcaccggcg
     2161 gcaacagcgg cagccccgtc atcaacggca gcggccagct catcggcctc gccttcgatg
     2221 gcaactacga agcgctcagc cacaagatca atttcgacaa agacctctgc cgcaccattt
     2281 gcgtcgacat ccgctacgtg ctctggtgca tcgacaaact cggcggcgcc tccaacatca
     2341 tcagcgagtt gaaactggtg aaacagtaat aaacacgcaa taactggata tcacaaaaac
     2401 tgcgggacga ttggttccgc agttttgttt ttggcagcta cgagccggga aaagacctca
     2461 cccc
//
LOCUS       DATIQF010000424         6738 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_219933,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000424 DATIQF010000000
VERSION     DATIQF010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6738
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219933"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            550..1287
                     /locus_tag="VLL95_06975"
     CDS             550..1287
                     /locus_tag="VLL95_06975"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: protein motif:HMM:TIGR00671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004594 - pantothenate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HSR38642.1"
                     /translation="MATALPTTLCIDFGNTRQKAALFEGSEQKAVQYFGEDLLSSTEQ
                     LLQEWKPQRSILSSVIDHPPAITELLQQRTLCHVLHAGSRLPFTTPVGKPETIGADRL
                     ALCAAAVQLFPHQNNLVIGLGTAVTYNFINVKNEFLGGGISPGMIMRMRALNSFTAKL
                     PIVQPDWNVPLIGYDTKTNIQSGVVLGLAMEIDGFVDAYKKRYGAFNVLLTGGDLVHL
                     APHLKNLIFADPDLLFKGLYAICDLNV"
     gene            1310..2584
                     /locus_tag="VLL95_06980"
     CDS             1310..2584
                     /locus_tag="VLL95_06980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38643.1"
                     /translation="MPAIFFVHLAHAQINSPYSRFAMGDVYNSRNVVSKGMGGLAAAI
                     TDLQAVNFINSASYSSLQTVTFDVGIENEIRTLLNPDRTVRSQSANLLFNYVSLGFPL
                     AKDKKGFTKWGMAFGLRPYTRVNYKILDDKRIPGIDSASTIYEGDGGAYRAFLGTGYR
                     VGGLSLGINAGFLFGATNINTQRRFNNDTVFYFNSMQETRTSYSRFALDAGFQYKLKM
                     TKTSFVRIGATGFLGNSVNAKQDRVRQTFIYNASNSIDSVDVAERTTQEKGIIELPAG
                     YSAGLSFEKENKWMIGAEYEAVNWSTFSYYGLTQTLANTSMLRFGGYWLPNALEGKNY
                     FSRVTYRVGFYTGKDLVVVNGTQLPVWGATFGFSLPVRRYNMYSNQFTSINTSFEFGR
                     RGNANVPITENFIRLNFGLNLSDLWFIKRKFD"
     gene            2605..3222
                     /gene="lptC"
                     /locus_tag="VLL95_06985"
     CDS             2605..3222
                     /gene="lptC"
                     /locus_tag="VLL95_06985"
                     /inference="COORDINATES: protein motif:HMM:TIGR04409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HSR38644.1"
                     /translation="MKLLPFLSAMLCLLLAACENNPEEVNALSRKVIEVEEGKNIKAI
                     FSQSGNRKAYLTAPAMSRVKADTQYVEFPKTIFVEFYNEQQQLQNVVKAKYARYFEQM
                     GKVFLRDSVVVYNTSGDTLHCKTLWWNQNEENFYTDDTVVINTRTQQLQGTGFWAKSD
                     FSKYTIRNTVGTVLLPDETADSTQTSADSSKAPKAPMPSAPPPRQ"
     gene            3307..4293
                     /locus_tag="VLL95_06990"
     CDS             3307..4293
                     /locus_tag="VLL95_06990"
                     /inference="COORDINATES: protein motif:HMM:TIGR01293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HSR38645.1"
                     /translation="MQYRRLGKSGLQVSLLSFGSWVTFHKQIEDNSADELMGMAYDAG
                     INFFDNAETYALGESEKMMGRVLRKKGWDRTSYVLSSKAYFGWRKPNLPNQTGLSRKH
                     LVEACHEALQRLQTDYLDLYFCHRPDKNVPIEEVVWTMNHLMQQGKILYWGTSEWSAQ
                     EIMEAHMVAERYRLIGPTMEQPEYNMFHREKMENEYLQVFSNVGLGTTIWSPLAAGVL
                     TGKYNEGIPDGSRLAIKGFEWLAAKQLNEQRIEKVRQLTTIANELGCSMAALAIAWCA
                     NNTNVSTVILGATKAGQLTENLKALEVLPLLSREVMEKIDGVLQNKPVLPEW"
     gene            4403..5779
                     /locus_tag="VLL95_06995"
     CDS             4403..5779
                     /locus_tag="VLL95_06995"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HSR38646.1"
                     /translation="MKKQHVWPLAFSFILALASCKKDAPANNNSGGGSTDSTLANTPS
                     NLVKDSSLLYARDIYLWYDQIPTTFKPRTYADPDAIMRAIRPYSIEPGFANPVDRWSF
                     AALKKDWDNTSAGIQQDFGMYVFFLQEGDLRVRFVEKNSPADKAGIRRGWRITRINNL
                     NTITTSAANSIVNAVYFSTTGSFGFQKPDGGTADVTLNAATYNSDPVLLDSVYTAGTK
                     KVGYMVFNSFLGDTSSIYSSFTRIFNKFASNGVNDVVVDLRYNGGGYVSVQQRLANWL
                     APTAANGKVQMNQTYNNRYSSYNATYRFQKLGGLNLDRIFFIVSSNTASASELLINNL
                     RPYMNVRVVGPSASYGKPVGYFPIPVGDWYVFPVSLRTTNANNEGNYFNGFVPEKVTA
                     DGIDKDWGDRGEASFASVLNFISTGTFGYLRPNITLNSAENAALGRTNAMLEGNTFKG
                     AVVNPKQR"
     gene            complement(5827..6078)
                     /locus_tag="VLL95_07000"
     CDS             complement(5827..6078)
                     /locus_tag="VLL95_07000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38647.1"
                     /translation="MKMMKQYLLIGGMAWLAATATAQIRREIDKAKKDPQTVERAARA
                     DAALVDLRRVTDCQQQENQDKPKPGQKMPEEKKGRKKKS"
     gene            complement(6389..>6738)
                     /locus_tag="VLL95_07005"
     CDS             complement(6389..>6738)
                     /locus_tag="VLL95_07005"
                     /inference="COORDINATES: protein motif:HMM:NF015226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015204 - urea transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071918 - urea transmembrane transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="urea transporter"
                     /protein_id="HSR38648.1"
                     /translation="GLVFFIAVYLSSPNAALWGLAGAFAGGLFAGLLVDQFDAVQQGW
                     FTFNSVLCAITFSGLKRRNGIFVLIAVFFSVVIENFMMAKGLTFLTFPFVMGTWLTLV
                     VRDVLLKKVLPSE"
BASE COUNT         1702 a         1730 c         1716 g         1590 t
ORIGIN      
        1 cagcaggccg gcgggttaga cctgggcaac ctggtgcaac aatttacggg tggtggtcaa
       61 tcgggcggcg gtggttttga catcggcaac cttgtgagcc aattcacttc cgggtcgcag
      121 gaacagggcc ggggtggcag cgatttgagc ggcctgatcc agggattttt caagtgaaat
      181 cactaattgt ttcgggcatt cgttaacgct taggaaaacc ttaagacagt cctgttaaat
      241 cacggttaat cacggctttc aatgcctccc atttaaaaaa tacaagcgac ttttgtactg
      301 tcgttttgaa tgagtaactt agaagagcga agagagaaaa agaggttttg aaaagattaa
      361 caagcgacag tgttacaaag gggcttttaa agcgtcttat atacagaaaa cagaaacaag
      421 taagattttt ctcataagca gttagttttg gttgaggccc tcgtttccac gagggccgat
      481 ttttttgccc caggtcgccc tgttttttaa gcgaattcag ataggtttgg cgcttaaatc
      541 atttggctga tggcaactgc gcttcccacc acgctttgta tcgattttgg caacacccgc
      601 cagaaagccg ctttgttcga aggatcggag caaaaggccg tgcaatattt tggagaagac
      661 ctgctgtctt ccaccgaaca gttgttgcag gaatggaaac cgcagcgcag catcctgtct
      721 tccgtcatcg atcatccgcc ggccattacc gaattgctgc agcagcgcac cctgtgccat
      781 gtgttgcatg ccggcagccg gctacctttt accacgccgg ttggcaagcc ggagaccatt
      841 ggcgccgacc gcctggcttt gtgcgccgcc gccgtgcaat tgtttcccca ccaaaacaac
      901 ctggtaattg ggttgggcac cgcggttacc tacaatttca tcaatgtaaa gaatgaattt
      961 ctcggcgggg gcatcagtcc cggcatgatc atgcggatgc gggcactcaa ttccttcacc
     1021 gccaagctgc ccattgtgca gcccgattgg aatgtgccct tgatagggta cgataccaaa
     1081 accaatatcc aaagtggcgt ggtgctgggg ctggccatgg agattgatgg attcgttgat
     1141 gcctacaaaa aaaggtacgg ggcatttaac gtgcttttaa ccgggggtga tttggtgcat
     1201 ttggcccccc acctcaaaaa cttgatattt gccgaccccg atctattgtt caaaggtttg
     1261 tatgcaattt gtgacctcaa tgtttaggcc caggaaatgg atggctgtcg tgccggccat
     1321 tttttttgtg cacctggccc atgcgcagat caattcgccc tattcgcgtt tcgccatggg
     1381 cgatgtatac aattcccgaa acgtggtcag caagggcatg ggaggactcg ccgcagccat
     1441 caccgacctg caggcggtca atttcatcaa ctccgcttcg tacagcagcc tgcaaacggt
     1501 aacctttgat gtgggcatcg aaaacgagat caggaccctt ctcaaccctg accgtacggt
     1561 gcgcagccaa agcgccaacc tgttgttcaa ctatgtatca ctcgggtttc cgctggccaa
     1621 agacaaaaaa ggtttcacca aatggggtat ggcttttggc ctgcgcccct atacccgtgt
     1681 gaactacaaa atactggatg acaaacgcat tccgggcatt gacagtgcct ccaccattta
     1741 cgaaggcgat ggcggggctt accgggcatt tttgggtacc ggttaccggg tgggtggtct
     1801 gtcgctgggc atcaacgcag gcttcctgtt tggcgctacc aacatcaaca cccaacgccg
     1861 tttcaacaac gataccgttt tctatttcaa ttcaatgcag gaaacgcgga catcatacag
     1921 cagatttgct ttggatgcag gcttccagta caaattgaag atgacgaaga cctctttcgt
     1981 acgaattggc gccaccggct ttttgggcaa cagcgttaat gccaagcagg atcgtgttcg
     2041 gcagacattt atttacaacg ccagcaatag catagattcg gtggacgtgg ccgaaagaac
     2101 cacccaggaa aaagggatca tcgaattgcc tgccgggtat tccgcggggc tttcgttcga
     2161 gaaggaaaac aagtggatga ttggtgcgga atatgaagcg gtgaactgga gtactttcag
     2221 ctactacggt cttacgcaga ccctggccaa caccagcatg ctgcgttttg gcggttattg
     2281 gctgcccaat gccctggaag gcaaaaacta tttcagccgc gtcacctacc gggtaggttt
     2341 ttatacaggt aaggacctgg tggtggtgaa cggaacccaa ctgccggttt ggggcgctac
     2401 ttttggtttt tcattgccgg tacgccgcta caatatgtac agcaaccagt tcacgtccat
     2461 caatacttcg tttgaatttg gtcgcagggg caatgccaat gtacccatta ccgaaaattt
     2521 catacgcctg aattttggtc tcaacctgag tgacctttgg ttcatcaagc gcaagttcga
     2581 ctaactcctt caacactgga aggcatgaag ctgctcccct ttttatccgc aatgctctgc
     2641 ctgctcctgg ctgcctgcga aaacaacccg gaggaagtga atgcgttgtc gcgaaaagtg
     2701 attgaagtag aagagggtaa aaacatcaag gccatattca gccagtcggg caaccgcaag
     2761 gcctacctca cggcaccggc catgagcagg gtaaaggccg atacccaata cgttgaattc
     2821 cccaagacca ttttcgttga gttttacaat gaacagcagc aactgcagaa tgtggtaaag
     2881 gcaaaatatg cccgctactt tgagcagatg ggcaaagtgt ttttgcggga cagtgtggtg
     2941 gtgtacaata cttccggcga cacgctgcat tgcaaaacct tgtggtggaa ccaaaacgag
     3001 gagaatttct ataccgacga tacggtggtc atcaatacac ggacccaaca gctgcaggga
     3061 acgggtttct gggccaaaag cgatttttcg aaatacacca ttcgcaatac ggtgggcaca
     3121 gtgttgctgc ccgacgaaac tgccgacagc acgcaaactt ctgccgatag cagcaaagcg
     3181 cccaaagcgc ccatgccatc cgccccaccc ccaaggcaat aaggcggcat tggtcttttt
     3241 aggtggagcc atagcaatgc ggtacaactc tggagtacct ttgcccttca aatcaaattc
     3301 agttgtatgc aatacagacg tttgggcaag tccggcctgc aggtatcgtt gttgagcttt
     3361 ggcagttggg ttacttttca caagcaaatt gaggacaaca gtgccgatga actgatgggc
     3421 atggcttacg atgccggcat caactttttc gacaatgcag aaacctatgc gttgggggag
     3481 agcgaaaaaa tgatgggccg tgtgctgaga aagaaaggct gggaccgcac cagctatgta
     3541 ctgagtagca aagcctattt tggatggcgc aaacccaact tgcccaacca aacgggcctg
     3601 agccgcaaac accttgtgga ggcctgccac gaagccctcc agcgtttgca aaccgattat
     3661 ctcgatttgt atttctgcca ccgtcccgac aaaaatgtac cgatagaaga agtggtatgg
     3721 acgatgaacc acctgatgca gcaaggcaag atattgtatt ggggtaccag cgaatggagt
     3781 gcgcaggaaa taatggaggc gcacatggtg gccgaaagat accggctgat aggccccacc
     3841 atggagcagc ctgaatacaa tatgttccac cgtgaaaaga tggaaaatga atacctccag
     3901 gtattcagta acgtgggttt gggcaccacc atctggagcc cgctggcggc aggggtactt
     3961 accggcaagt acaatgaagg catacccgac ggcagccgcc tggccatcaa gggttttgaa
     4021 tggctggcag ccaagcaact gaacgaacag cgcattgaaa aggtacgcca gctaaccacc
     4081 attgccaacg agctgggttg cagcatggct gccctggcca ttgcctggtg cgccaacaat
     4141 accaatgtta gcaccgtgat cctgggcgcc accaaggccg gtcagctcac cgaaaacctg
     4201 aaggcgctgg aagtgctgcc cctcctcagc cgggaagtga tggagaagat tgatggcgtg
     4261 ctacaaaaca aaccagtact gcccgaatgg taacgacacc cggggttgtt aaaatttctg
     4321 cccaaccata aacaatgcgc aggtcttttg gtctgccttg gtaaattgct catcctttgt
     4381 gaaaatgaaa ggtgcctatt ttatgaaaaa gcaacatgtt tggccgctgg ccttctcttt
     4441 tatccttgca ttggcttcgt gcaaaaagga tgccccagcc aacaacaaca gtggcggagg
     4501 atccactgat tccacgctgg cgaatacgcc ttccaacctg gtgaaggatt cgtccttgct
     4561 gtatgcccgc gatatttacc tgtggtacga tcagatcccc actactttca aaccccgcac
     4621 ctatgccgac cccgatgcca tcatgagggc aataagacct tacagcattg aacctggttt
     4681 tgccaaccct gtggaccgct ggagctttgc cgccctaaaa aaagactggg acaataccag
     4741 tgccggcatc cagcaggact ttggcatgta tgtgttcttc cttcaggaag gcgatctgag
     4801 ggttcgtttt gttgaaaaga attctccggc ggacaaggcc ggtattcgca ggggctggcg
     4861 catcacacgc atcaacaacc tgaacaccat tactacttcg gcggccaact ccattgtaaa
     4921 tgccgtgtat ttcagcacta ccggcagttt cggatttcag aaacccgatg gcggcactgc
     4981 ggacgtaacc ttgaacgctg ccacttacaa ctccgaccct gttcttttgg attcggtgta
     5041 cacagccggc accaaaaagg tgggctacat ggtgtttaat tcattcctgg gcgatacatc
     5101 ctccatctac agttccttta cccgcatctt caacaaattc gccagcaatg gcgtaaatga
     5161 tgtggtagtg gatttgcgct acaacggcgg cggttacgta tcggtgcagc agcggctggc
     5221 caactggctg gctcctacag cagccaacgg caaggtgcaa atgaaccaga cctacaataa
     5281 ccgctacagc agctacaacg ctacttaccg gttccagaaa ctgggagggc tcaacctgga
     5341 ccgcatcttc tttattgtaa gcagcaacac tgcctccgcc agcgaattgc tcatcaacaa
     5401 cctgcggcct tatatgaatg tacgggtggt agggccatcg gcctcctatg gaaagccagt
     5461 ggggtatttc cccattccgg tgggcgactg gtatgtgttc ccggtatcgc tgcgcacaac
     5521 caacgccaat aatgaaggca actatttcaa cggtttcgtt cctgaaaaag taaccgctga
     5581 cggcattgac aaagattggg gcgaccgtgg cgaggccagc tttgccagcg tactgaactt
     5641 tatttccacc ggcacctttg gctacctcag gccgaacatc acgctcaact ctgccgagaa
     5701 tgcagcattg ggacgtacca atgctatgct ggaaggaaac acctttaaag gtgccgtggt
     5761 gaatccaaaa cagcggtaag attttacgca acgaaataat tgaatcacgg agctggccac
     5821 ttatggtcag ctctttttct ttcgcccctt tttttcttcg ggcatttttt ggccaggttt
     5881 gggtttgtcc tggttttcct gctgttggca atctgtaacc cttctcaggt ctaccagcgc
     5941 cgcatcggcc ctggccgctc tttcaacagt ttgagggtcc tttttggctt tgtcaatttc
     6001 ccgccggatt tgagcagtgg cggtagcggc cagccatgcc atgcctccga tgaggaggta
     6061 ttgtttcatc attttcatcc tgtctgtttt ttctggtgaa acgatggagg gcgcaattgg
     6121 taacaacaac ttccttcaat taacaagttg agagcgaact tcttccccca ttgtgctgcc
     6181 ttcaaagaaa agccggcctt attgctaaag ccggcttctg tgaatgtatt gctgaacggt
     6241 gccagcactt tattactgat cattccaaca acgcaccttt tgccatttgt aatccggatg
     6301 aatggctggt tcggcatgca ttcctctcct ggaagtgaaa ggaaactgca ccaaccgttt
     6361 gccaatcatc aaatcggctg actgcgtatc attcggaagg caaaaccttt ttcaggagca
     6421 catcgcgaac caccagggtg agccaggtgc ccatcacaaa aggaaaagtg aggaaggtga
     6481 gcccttttgc catcatgaag ttttcaataa ctacggagaa gaaaacagca atgagcacaa
     6541 aaatgccgtt cctgcgtttc aggccagaaa aggtaatggc gcaaagcact gagttgaaag
     6601 tgaaccaacc ttgctgcacg gcatcaaact gatcgaccag gaggccggca aaaaggccgc
     6661 cggcaaatgc acctgccagg ccccacaaag ccgcattggg gctgctgagg taaactgcta
     6721 tgaaaaacac aagacccg
//
LOCUS       DATIQF010000425         2063 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_280560,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000425 DATIQF010000000
VERSION     DATIQF010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2063
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280560"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            201..1208
                     /locus_tag="VLL95_07010"
     CDS             201..1208
                     /locus_tag="VLL95_07010"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside phosphotransferase family
                     protein"
                     /protein_id="HSR38649.1"
                     /translation="MPPLKEICAAFGISLKDSAPITEGLINQTFRVTDAMGRHYLLQQ
                     INTGIFKQPQQVQENFVAVRQVLSKWYVMPELVPTAENGLLVNIDGRCWRCFTFMENS
                     FTPTGAVSADLAYTTAKCFGEYTNLLSEARPQLHTILPRFHDLSLRADQLLQAKEKAS
                     PMRLKMAAPWLSRLDAYDELLKQYRYWSAHPQYFPQRILHHDAKASNILFHLQTHQVI
                     CPIDLDTTQHGLFFSDLGDMIRSMVPNLDENDTHFNDFEARSIFLQAITDGYLDATHA
                     LWTKQEREALPLSGKVLLYMQAIRFLADYLNNDTYYQTKYEQHNLDRAINQITVLSLL
                     K"
     gene            1366..>2063
                     /locus_tag="VLL95_07015"
     CDS             1366..>2063
                     /locus_tag="VLL95_07015"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HSR38650.1"
                     /translation="MSAEKSGISFANQVSENETFNITTYEYLYNGGGVAAGDVNNDGL
                     IDLYFTGNMVPNKLYLNKGQMQFEDITEKAAVSGRSKWKTGVNMADVNGDGLLDIYVC
                     YSGPGTDAERSNQLFINKGVKNGIPQFEEQAAAYGLDAPGTYSTQCAFFDMDRDGDLD
                     AFMVNHADMFYNVFYNTKQLRKLRHPQFGNRLYRNDNGRFTEISEAAGITGSGINFGL
                     GVAIDDVNGDHWPD"
BASE COUNT          549 a          484 c          520 g          510 t
ORIGIN      
        1 cttcccggat tttaccaatg gccaatggaa aaacaggaaa aacacttttg caattgatga
       61 tagttattga aggaagatgg attgattttt tcaccactga gtaaacgggg gaaaccacag
      121 aggtaaagga gaaattttcc ctttgatact cagtgcctac tctgatttct ctgtggttta
      181 atcagccatg catttttgcc atgccaccac taaaagagat atgtgcagct tttggcatta
      241 gcctcaagga ttcggcgccc attaccgaag ggttgatcaa ccagaccttc agggttactg
      301 atgcaatggg caggcattac ctgttgcagc aaatcaatac cggcattttc aaacaaccgc
      361 aacaggtaca agagaatttc gtggcggtgc ggcaggtgct gagtaaatgg tacgtaatgc
      421 ccgagttggt gcccacggcc gaaaatggct tgctggtgaa cattgatgga cgatgctggc
      481 gttgtttcac cttcatggag aacagcttta cgcctaccgg cgcagtgagt gcggacctgg
      541 cgtataccac tgccaaatgt tttggcgagt ataccaacct gttgagtgaa gcccggccac
      601 aactgcatac catattgcca cgctttcacg atctctcgct gcgggctgat caacttttgc
      661 aggccaaaga gaaggcttcg cccatgcggt tgaaaatggc ggcaccttgg ctgagtcggc
      721 ttgatgctta tgatgaactg ttgaagcaat accgttattg gtcagcacat ccgcaatatt
      781 ttccgcagcg catattgcac cacgatgcca aggccagcaa tattcttttt catttgcaaa
      841 cgcaccaggt catttgcccc attgacctgg atactacaca gcacggcttg tttttcagcg
      901 accttggtga tatgatccgc agcatggtgc ccaatcttga tgagaacgat acccatttca
      961 atgattttga agctaggagc atttttttgc aggccatcac cgatggctac ctggatgcca
     1021 cccatgcgct gtggaccaaa caggaaaggg aggcattgcc gttgagcgga aaagtgttgc
     1081 tgtacatgca ggctattcgc ttcctggccg actatcttaa caacgatacc tactatcaaa
     1141 caaagtacga gcagcacaac ctggatcggg cgatcaacca gatcaccgtg ctttccttac
     1201 tgaaataaaa aagtaccata cttacttttg gaaatgagtt tacaaacagc catcagcaag
     1261 tttaccagca aaggccgctg gcaaatcatc gcatgggttt ccttcggttt gtttgggctt
     1321 gcgggctgta aagaaaattc agctccagga aaattattct caaaggtgtc tgctgaaaaa
     1381 agtggcatct cctttgccaa ccaggtttcc gaaaacgaaa ccttcaacat cactacttac
     1441 gagtatttgt acaatggtgg cggtgtggct gccggtgatg tcaacaacga tggtctcatc
     1501 gatctttact tcaccgggaa catggtgccc aacaagctgt acctgaacaa agggcaaatg
     1561 cagtttgaag acattaccga aaaagctgct gtgtcgggcc gcagcaaatg gaagacagga
     1621 gtgaacatgg ccgacgtgaa tggagatgga ttactcgata tctacgtttg ttattcgggt
     1681 ccgggaacgg atgcggagcg cagcaaccag ttgttcatca acaagggcgt gaagaatggc
     1741 ataccgcaat ttgaagaaca ggcggcggcg tatggcctcg acgcaccggg cacctacagc
     1801 acgcaatgtg cctttttcga tatggatcgc gatggagacc tggatgcttt catggtgaac
     1861 catgccgata tgttttacaa tgtgttttac aacaccaagc aactgcgaaa gcttcggcac
     1921 ccgcagtttg gcaatcgatt gtatcgcaac gacaatgggc gcttcaccga aatcagtgag
     1981 gcggcgggca tcaccggaag cggcatcaac tttgggttgg gcgtagccat tgatgacgtg
     2041 aatggtgatc attggccgga tat
//
LOCUS       DATIQF010000426         1761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_144086,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000426 DATIQF010000000
VERSION     DATIQF010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1761
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144086"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..474)
                     /locus_tag="VLL95_07020"
     CDS             complement(<1..474)
                     /locus_tag="VLL95_07020"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HSR38651.1"
                     /translation="MIPTSKTAFVTGATGFVGQALVRALLQDNWQVHALVRKIPDEMF
                     PENANLIWHTGDIRDAEAVATAMRDCDCVFHTAALTTAWDENRDAMYSTNVKGTENVF
                     KAALAHGIRRVVFTSSCSVAGVAANLELTEDDPRMEHFELHYEVTKKLAEDLADAY"
     gene            complement(494..1060)
                     /locus_tag="VLL95_07025"
     CDS             complement(494..1060)
                     /locus_tag="VLL95_07025"
                     /inference="COORDINATES: protein motif:HMM:NF040005.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6134 family protein"
                     /protein_id="HSR38652.1"
                     /translation="MALLPYPVLASDTVNQPSFSIWRKGKQIGTAVGERGIQGNGTTL
                     LFTVSMEARILLSIKVQAVTENLFLGNCLATARYQKMVNGARLNTLSLKQAGNRYVVI
                     DDDATSIIEKHPISFTAISMYFSEPVSVYTLYSESNNCFVSIEHLGNGRYRIRQPNGN
                     TTTYFYQQGQLVRMEAESSYGLIIFKRN"
     gene            1414..>1761
                     /locus_tag="VLL95_07030"
     CDS             1414..>1761
                     /locus_tag="VLL95_07030"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSR38653.1"
                     /translation="MYPFNLYFTITVLASGPLVSGLSRLVSSLLAANVYVLVLGAVIL
                     VVAIAEILVWRLQSIRKKELEAQQVKAQMMELHDKALRAQMNPHFLFNSLNSIKQLVQ
                     ENKNQEALNYLGTF"
BASE COUNT          437 a          443 c          410 g          471 t
ORIGIN      
        1 gtatgcatct gccaggtctt ctgccagttt cttggtcact tcatagtgca actcaaaatg
       61 ctccattcgc ggatcatctt cagtgagttc caggttcgct gcaactccag ccactgaaca
      121 actgctggta aagaccaccc gcctgatgcc atgagccagt gcggctttga atacattttc
      181 tgtgcctttt acattggtgc tgtacatggc atcccggttt tcatcccagg cagtggttaa
      241 tgcggcggtg tgaaatacac aatcacaatc ccgcatggcg gtggcaactg cttcggcatc
      301 cctgatatcg ccggtatgcc aaatgaggtt cgcattttcg ggaaacatct catcaggaat
      361 tttccttacc agtgcatgca cctgccagtt gtcctgcaac agggccctca ccaatgcctg
      421 ccccacaaat cctgtggcgc cggtaacaaa tgctgtttta gaagttggaa tcatatttgt
      481 gctcccgcag cttttaattc cgtttaaaaa tgatgagacc atagctgctc tctgcttcca
      541 tgcgcaccaa ttggccttgt tgatagaagt aggtggttgt attgccattg ggctgcctga
      601 tccgatacct gccatttccc aaatgctcta tggaaacaaa acagttgttg ctctccgaat
      661 acagggtata cactgaaact ggttcactga aatacatgct gatggcggtg aaactgatgg
      721 gatgtttttc aatgatggac gttgcatcat cgtcaatcac cacataccgg ttgcctgctt
      781 gcttcagcga tagcgtattg agccgggcgc cattcaccat tttttgatag cgtgccgtgg
      841 caaggcaatt gccaaggaac agattttccg taactgcctg cacttttatg ctcaaaagga
      901 tccttgcttc cattgaaacg gtgaacagca gtgtagtgcc atttccctgt atgcctcttt
      961 cgcccacggc agtgccgatt tgttttcctt ttcgccagat ggaaaacgaa ggctgattca
     1021 cagtatcaga tgccagcacc gggtaaggga gcagtgccaa aaagcatata ccgatcagca
     1081 gtgcaaacca gctgcctcca tggaaggtca gccttgctga gcggcttctg cggtggttgt
     1141 tatggcatga cgtgctgatc atgacccaaa actaccctgc cctgaaaacc tcatcaacac
     1201 acagttggca gttgtggcag gtgggtatac cagctgcaca tatcatttta catcagtgca
     1261 gcgctgttcc agcgtaaata tgagtagtac aattattggc tcaaaacagc caaccgtcaa
     1321 gcgataccca ttattcacca aagaaacttt tatctctcat ttacaaatgg taattttcta
     1381 caatgggagc ggtttatgca tctctcattc attatgtacc ctttcaacct ttatttcacg
     1441 atcacagtgc tggcatcagg gcctttggtt tccgggctgt cgcgactggt ctcaagcctg
     1501 ctggcagcca atgtttatgt gctggtgttg ggcgcagtta tattggtggt ggccattgca
     1561 gaaatactgg tgtggcgatt gcagagcatc cggaaaaagg aactcgaagc gcaacaggta
     1621 aaggcacaaa tgatggagct gcacgacaag gcattgaggg cccaaatgaa tcctcatttc
     1681 cttttcaaca gcctgaacag catcaaacaa ctggtgcagg aaaacaagaa ccaggaagcg
     1741 ctcaactacc tgggcacctt t
//
LOCUS       DATIQF010000427         4802 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_113633,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000427 DATIQF010000000
VERSION     DATIQF010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4802)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4802
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113633"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1532)
                     /gene="hutU"
                     /locus_tag="VLL95_07035"
     CDS             complement(<1..1532)
                     /gene="hutU"
                     /locus_tag="VLL95_07035"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: protein motif:HMM:TIGR01228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016153 - urocanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HSR38654.1"
                     /translation="METVTRRYDKLKYKTPTGTQLNCKGWIQEAALRMLLNNLDPEVA
                     ERPDDLIVYGGRGKAARNFEALDNIIKALKVLEEDESLLIQSGKPVGILKTHKDAPRV
                     LISNSQLVPKWATWEHFDELEKKGLMMYGQMTAGSWIYIGSQGIVQGTYETYAAIADK
                     HFGGTLKGTLNVTAGLGGMGGAQPLAITMNEGVALIAEVEEWRIDKRLETRYLDEKYS
                     SIDHAINAAMHYRREGIAKSIGVVCNAVHLLDHLLSRDIIPDTLTDQTSAHDPLIGYV
                     PHTLSNEQANVLRESNPDEYLRLSYESMHLHVQLMMELQRKGAITFDYGNNIRARAIE
                     FESKNHGHYQLPALGTTDPAALFPGFVPAYIRPLFCEGKGPFRWAALSGDPNDIAVTD
                     DLIRELFPENKSLMRWLDLAKEKIAFQGLPARICWLGQGEREKAGLAFNELVRTGKVK
                     APIVIGRDHLDTGSVASPNRETESMLDGSDAVADWPLLNALVNTAGGASWVSLHHGGG
                     VG"
     gene            complement(1567..2646)
                     /locus_tag="VLL95_07040"
     CDS             complement(1567..2646)
                     /locus_tag="VLL95_07040"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HSR38655.1"
                     /translation="MEEYSNAIDGPYVLYRNDSMIVHYIDSSEGAGPILRTLPYKASH
                     RENVVLKIRTDEPGKFFEVKLKKKLTNEKANFSKPKVMLALSDIEGDFAAFRHLLQGN
                     GVIDSNFNWTFGKGHLVLIGDFVDRGSMVTELLWLIYSLEDKAEAAGGKVHYIMGNHE
                     IMNMNGELDYVHPRYMQHAAMMQVPYINLFGNETELGRWMGTKNVAEQIGDILFTHGG
                     MSAYINIMELPLKSMNDSVRKYRTDTSFNYPSPHAQILFSDLGPFWYRGYYMGNPKAS
                     MAQVDSTLKLYETSYITTGHTIVANRIATLYDGKVINTDLQHAKGISEALLVEGNKMF
                     RVNIKGEKLPLEPLAPASSVTPIKN"
     gene            complement(2834..4336)
                     /gene="hutH"
                     /locus_tag="VLL95_07045"
     CDS             complement(2834..4336)
                     /gene="hutH"
                     /locus_tag="VLL95_07045"
                     /EC_number="4.3.1.3"
                     /inference="COORDINATES: protein motif:HMM:NF006871.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004397 - histidine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HSR38656.1"
                     /translation="MSYNYLPLDSTPTHFNQVKYLLDYDQDISVTFTAYESIEKCRRY
                     LDNKMSGGEGLYYGINTGFGYLQDVKIDDSQIEQLQYNLLMSHACGMGDTVPTEIVKL
                     MLALKVKSLSYGFSGVQNETVQRLIDLHNARTYPVVYTQGSLGASGDLSPLSHLCLPI
                     IGMGKVWKDGRQIDTRLVEQELGWQPVHLKSKEGLALINGTQFMSAYGMWCLVKADRL
                     IKWTDFIACISADAFNCNTQPFTEQIHRIRPHKGQIHTANRLRALLAQSDIAHAPGKA
                     VQDPYSFRCIPQVHGASKDAFDHVQEVFLQEINSVTDNPNVFPDEDLILSGGNFHGQP
                     LALALDYLGIAMSELANISERRTYQLISGQRGLPLFLVKDAGLNSGFMIPQYTAASMV
                     SQNKQLCTPASVDSISSSNNQEDHVSMGANAATKCYHIVNNLEKVLAIELLSAAQALD
                     YRRPMKSAPVLEDIIGAFRKQVSFNEKDRVLHEDMMAAVDFIRQTKIDDI"
     gene            4495..>4802
                     /locus_tag="VLL95_07050"
     CDS             4495..>4802
                     /locus_tag="VLL95_07050"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HSR38657.1"
                     /translation="MFYLHHTPFWLRMLFPKGLIWEGPVAKGDEVYLTFDDGPHPDAT
                     PFVLDQLDACGMKGTFFCIGKNVAKHPEIMADILKRGHAVGNHTMHHLNAKQASADDY
                     "
BASE COUNT         1058 a         1193 c         1236 g         1315 t
ORIGIN      
        1 atgcccacgc caccaccgtg gtgaaggctt acccaactgg cgccaccagc cgtgtttacc
       61 agtgcattca gcaaaggcca gtcggccacg gcatcgctgc catccagcat cgattccgtt
      121 tcgcggttgg ggctggccac actgccggta tccaaatgat cgcggcctat tacgatgggg
      181 gcttttactt ttccggttct taccagttcg ttgaatgcca atccggcttt ctccctttca
      241 ccctggccca gccagcaaat acgggcaggc aagccctgga aagcaatttt ttctttcgcc
      301 aggtcgagcc agcgcatcag tgatttgttt tcaggaaaca attcgcgaat gaggtcatcg
      361 gttactgcta tatcattcgg gtcgccactc agggctgccc aacggaaggg gcctttgcct
      421 tcgcagaaca atggcctgat gtaggcaggc acaaagcccg ggaataacgc agcgggatcg
      481 gtggtgccca gtgccggcaa ttggtaatga ccgtggttct tgctttcaaa ttcaatagct
      541 cttgcccgaa tgttgttgcc ataatcaaaa gtgatggcgc ctttgcgctg cagttccatc
      601 atcagttgca catgcaggtg catgctttca taactcaggc gcaggtattc gtcagggttc
      661 gattcccgca gcacattcgc ctgttcgttg gaaagggtat gaggcacata tccgatcaag
      721 gggtcatgcg cactggtttg atcggtcaat gtatccggga tgatatctct tgacaacagg
      781 tgatcaagca ggtgcaccgc gttgcaaacc acgccaatgc ttttggcaat gccttcgcgg
      841 cggtagtgca tggcagcgtt gatggcatgg tcaatgctgc tgtatttttc gtcgaggtac
      901 ctggtctcca gtcttttgtc gatgcgccat tcttctactt cggctatcaa tgccactcct
      961 tcattcatgg taatggcaag cggttgtgca ccgcccatgc ctccgaggcc tgctgtcaca
     1021 ttcagtgtgc ctttaagggt gccgccaaag tgtttgtctg caatggctgc ataggtttcg
     1081 taagtgcctt gcactatgcc ttgtgaaccg atgtagatcc aactgccggc ggtcatttga
     1141 ccgtacatca tcagtccttt tttctccagc tcatcaaaat gttcccaggt agcccatttg
     1201 ggtaccaact ggctgttgct gatgagcacc cgtggcgcat ctttatgcgt tttcaaaatg
     1261 cctacgggct tgccgctttg aatcaaaagg ctttcatctt cttcgagcac tttcagcgct
     1321 ttgatgatat tatccagcgc ttcaaaattc cgggctgcct taccgcggcc gccatacacg
     1381 atcaaatcat caggccgttc tgctacttca ggatccaggt tgttgagcag catccggagg
     1441 gcagcttcct ggatccagcc tttgcaattg agttgtgtac cggtaggtgt tttgtatttc
     1501 agtttgtcgt aacgcctggt taccgtttcc atggttgcaa tcgtttttta tgtacaggtt
     1561 ggttgttcag ttcttaatgg gggtgaccga actggccgga gccagtggtt ccagcggaag
     1621 tttttctccc ttgatgttta cgcggaacat tttgttgcct tccaccaaca aggcttccga
     1681 aatgcctttg gcgtgttgca gatccgtatt gatgaccttg ccatcgtaga gggtggcaat
     1741 gcgattggct acaatggtat ggccggtggt gatgtaagaa gtctcataca gtttcaaagt
     1801 gctgtctacc tgcgccatgg atgccttggg attacccatg tagtaacctc tgtaccaaaa
     1861 aggcccgagg tcgctgaaca aaatctgcgc atgcggactc ggatagttga aggaggtatc
     1921 ggtacggtat tttctcacgc tgtcgttcat gcttttcagt ggcagttcca taatgttgat
     1981 atacgccgac atgccaccat gggtgaagag aatgtcgcca atttgttctg ccacattctt
     2041 ggtgcccatc catcggccca gttcggtttc atttccaaac aggttgatgt atggaacctg
     2101 catcatggca gcgtgctgca tgtagcgggg atgtacgtag tccaattcac cattcatgtt
     2161 catgatctcg tggttgccca tgatgtaatg cactttgcca cctgcggctt ccgctttgtc
     2221 ttccagtgaa tagatcagcc agagcagttc ggtcaccata cttcccctgt caacaaaatc
     2281 accaataagc accaggtgtc ctttgccaaa tgtccagttg aaattgctgt cgatgacgcc
     2341 attgccctgc agcaagtgtc tgaaggccgc aaagtcgcct tcgatgtcag acaacgccag
     2401 catgactttg ggtttgctga aattggcttt ctcattagtg agcttttttt tcagctttac
     2461 ttcgaaaaat ttgcccggtt cgtcggtacg gatcttcagt accacatttt cacgatggct
     2521 cgctttgtac ggaagcgttc gcagtatggg tcctgcgcct tccgaggaat cgatatagtg
     2581 aacgatcatg gaatcattcc gatacaaaac gtagggccca tcaatggcat tgctgtactc
     2641 ctccatcgtt gaaaaatttt tgtcagttgg tttgaaggct atcagccaaa ctgtcaaaag
     2701 aactgccggt aacaaaatca atcgtttcat aaatggaatt tactgattta tgggttggca
     2761 gatgatgatg aagatgttaa tcaccggaaa aattcaacaa gaattaaaag atgatttcga
     2821 tacagggaga tgatcagata tcatcgattt tggtttggcg aatgaaatcg actgccgcca
     2881 tcatatcctc gtgcagcacc cggtcttttt cattgaagct gacctgcttt ctgaaggcac
     2941 cgatgatgtc ctccagcacc ggggcacttt tcatgggtcg gcggtaatcc aatgcctgtg
     3001 cggcactgag caattcaatg gccagcactt tttccaggtt gttgactatg tggtagcatt
     3061 tggtggcggc attggcgccc atgctcacgt ggtcttcctg gttgttgctc gaagaaatgc
     3121 tgtctacgct agccggggtg caaagttgtt tgttctggct caccatactg gcggcggtgt
     3181 attgtggtat cataaagcca ctgttcagcc cggcatcttt caccaggaac aatggcaatc
     3241 cacgctggcc gctgatgagt tggtaggtgc gtcgttcact gatgttggcc agttcgctca
     3301 tggcaatgcc gaggtaatcg agtgccagtg caaggggctg cccgtggaag ttgccaccac
     3361 tcagtatgag atcttcatca gggaaaacgt tggggttgtc agttacgctg ttgatctcct
     3421 gcaggaatac ttcctgcaca tgatcaaatg catctttact ggcgccatgc acttgcggaa
     3481 tgcagcggaa agagtagggg tcctgcacgg ctttgcccgg tgcatgggca atgtcacttt
     3541 gtgccagcag tgcccgcaag cggttggccg tgtgtatttg tcctttgtgc ggccgaatgc
     3601 ggtgtatttg ctcagtgaat ggctgggtat tgcaattgaa ggcatcggcg gaaatgcagg
     3661 cgatgaaatc ggtccatttg atgaggcgat ccgctttcac gagacaccac atgccatagg
     3721 cgctcatgaa ttgagtgccg ttgatcaggg ccagtccttc cttgctctta agatgcacgg
     3781 gttgccagcc aagttcctgc tccaccaacc tggtatcgat ttgccggcca tccttccaca
     3841 ctttgcccat gccaataatg ggcaggcaga gatggctgag cggtgaaagg tcgccactgg
     3901 cgcccaggct gccttgagta tacaccacgg ggtaagtgcg ggcattgtgc agatcgatga
     3961 ggcgttgcac cgtttcgttt tgcacgccgc tgaaaccgta actcagactt ttcactttca
     4021 atgccagcat cagtttcacg atttccgtgg gcacggtgtc gcccatgccg caggcgtgac
     4081 tcatcagcag gttgtactgc agttgctcaa tttgcgagtc atcaattttt acatcctgca
     4141 aatacccgaa gcccgtattg atcccataat aaagaccttc tccgccagac attttattgt
     4201 caaggtagcg gcgacatttt tctatggatt cataggcagt gaaggttact gatatgtcct
     4261 ggtcataatc cagcaaatac tttacctggt tgaaatgggt aggcgtgctg tccagtggca
     4321 gataattata actcatatgg cggcaagcaa tagttcggcc cgcaatgtaa catttacagc
     4381 agatcacagg tcgccttatt gacaaaaccg ctggcctcct tgatcagccc tgcagatttc
     4441 aggcaataat tcccgaaggg ccgggattgt ggaaacaccc ataaattgca ggccatgttt
     4501 tacctgcacc ataccccttt ttggctcagg atgctttttc caaaaggatt gatttgggag
     4561 ggcccggtag cgaaaggcga cgaggtgtac ctcacctttg acgatggacc ccatccggac
     4621 gcaactccct ttgtgctgga tcagctcgat gcctgtggta tgaaaggcac atttttctgt
     4681 atcggaaaga atgtggcaaa gcatccggaa atcatggctg acattctgaa gcgtgggcat
     4741 gcggtgggca atcataccat gcatcatttg aatgcgaagc aggcaagtgc agacgattat
     4801 tt
//
LOCUS       DATIQF010000428         3522 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_22455, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000428 DATIQF010000000
VERSION     DATIQF010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3522
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22455"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..800)
                     /locus_tag="VLL95_07055"
     CDS             complement(<1..800)
                     /locus_tag="VLL95_07055"
                     /inference="COORDINATES: protein motif:HMM:NF015131.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HSR38658.1"
                     /translation="MPYSKPLLPIAFAFACVAMFSCSKQDNATAGSPANSYPVVEAKF
                     AGKIDLKNLDNYAAQATPNYIVKNNAPGFAISNAKATLGRVLFYDKSLSIDNSISCGS
                     CHKQQFAFSDTMTPSKGVERGLTGRHSMRLVNIRFANEAKMFWDERAINLENQTSQPI
                     KDHAEMGFSGLSGRPTIQNLLEKLQGIDYYNELFRFVYGDITVTEGRLQECLSHFIRS
                     IQSFDSKYDAGRSQAPNDGAPFPNFTALENQGKQLWLAPPVFDATGNR"
     gene            complement(893..2581)
                     /locus_tag="VLL95_07060"
     CDS             complement(893..2581)
                     /locus_tag="VLL95_07060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38659.1"
                     /translation="MRHFVKHFWLKLLCCLLVGYQLQGQSPYVPPANHWWAAGFQLKM
                     PDSYRVVPFTGQTGAGHDNAPALQAILDTITQPTVVLLGSGDYYFQRTIYLHSNTVLK
                     GLGNDRTRLFVAPADIYTPCISIEGAELEVNYPVAGNGIAAGDSLITITAAGWEAIAK
                     GDYIRLIQNDSSLVNDDWALRRTGQVVRIEALLPATMQVRLSAPVRIPYPAAKGPVFR
                     KLNPVAFSGVECLRIERMNTSPLNGGTANIEFSYAHHAWVRGVESVKCNFSHVEASFS
                     AHLYIHNNYFQDAFDFGNGGFGYGVTLHQGTSDCRVENNVFRRLRHAMLLQIGASGNV
                     FAYNYAYQSRKEGAFGLVSTGEDMVLHGNYSYHNLFEGNYAQFASVDNSHGANGPYNT
                     YFRNMVTSDGFDITNSQSNYQQLLANHRLAGSNTIRGSQHVIVNNNWQGSSTYNVASL
                     AYPQRPSFIPLAQWGQIGPPTFNTAASIPARDRVTKNNQPIILPCRELVWDGTSWRDG
                     LAPGPFTGAFTLRIEAGQAALVSGVIAVDSVQQLPGSVLKLAPGSTLQVGANRQ"
     gene            complement(2765..>3522)
                     /locus_tag="VLL95_07065"
     CDS             complement(2765..>3522)
                     /locus_tag="VLL95_07065"
                     /inference="COORDINATES: protein motif:HMM:NF012363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HSR38660.1"
                     /translation="FGAFPVCVDGYFFPQSPQEIFARGQQAKVPLMAGWNTQESGPQM
                     ILGNGPATVENFRKGVARIHGANAEKILKVYQPASDEEAEQAATDLAGDMFIGFGTWM
                     LTHVHSGNSGKPVYRYLYARPRPQMRPEMGNAQAGLAGGIIRDTTGKAKAPAPPAKGA
                     VHSAEIEYAMGNLPTNRVYDWQPEDFTVSGVLQGYFVNFIQTGNPNGLGLPKWPAFSS
                     LSGAHVMRIDVNSVANPSKLEDRYFVLKELMPR"
BASE COUNT          847 a          941 c          903 g          831 t
ORIGIN      
        1 atgcgattgc cggtggcatc aaataccgga ggcgccagcc acaattgctt gccctggttt
       61 tcgagggctg tgaaattggg aaacggtgct ccatcattgg gcgcctggct gcggccggca
      121 tcatatttcg agtcgaacga ctgaatgctg cgaatgaaat gcgagaggca ttcctgcagc
      181 ctgccttctg taacagtaat gtcgccgtaa acaaacctga aaagctcatt gtagtagtca
      241 atgccctgca atttttccag caggttctga atggtggggc ggccactcaa accgctgaaa
      301 cccatctcag catgatcctt gatgggttgg ctggtttggt tttccaggtt aatggccctt
      361 tcatcccaga acattttggc ttcgttggca aaacgaatgt tcaccaaccg catcgaatgc
      421 cgaccggtca atcctctttc cacccctttg ctgggcgtca tggtatcgct gaatgcaaat
      481 tgttgcttat ggcaactgcc gcaagaaatg ctgttgtcga tgctcaggct cttgtcgtaa
      541 aacaacacac gacccagcgt cgcttttgca ttgctgatgg caaatcccgg tgcattgttt
      601 ttgacaatgt aattgggggt ggcctgtgcc gcataattgt cgaggttttt cagatcaatt
      661 ttgccggcaa attttgcttc gacaaccggg taggaattgg ccgggctacc agcagttgca
      721 ttatcctgct tggagcagga aaacatcgcc acgcaggcga acgcaaaagc gataggcaag
      781 agaggttttg aatagggcat ggcacaacga ctgatttcag caacaaaagt ttaaagcggc
      841 aaccctaccg ggtgccggac aatgtactga gcgtaaaatg aaatcacaca aattattgcc
      901 tgttggcccc tacctgtaag gtactgccag gcgccaattt caacacgctg cccggcagtt
      961 gctgcaccga atccaccgca atgacacccg atacaagagc agcctgtccc gcttcaatgc
     1021 gcaaagtgaa agcacccgta aaaggcccgg gcgcaagccc atcccgccag gaggtgccat
     1081 cccataccag ttcccggcag ggcaaaatga tgggttgatt gtttttggtt acccggtcac
     1141 gggctggtat gctggctgcc gtgttgaaag taggcggacc tatttgcccc cattgtgcca
     1201 acggaatgaa ggagggccgt tggggataag cgaggctggc cacattataa gtggaactgc
     1261 cctgccagtt gttgttcaca atcacatgct ggctgcccct gatggtatta ctgccggcca
     1321 gccggtgatt ggccagcagt tgctgataat tgctttgtga attggtgata tcaaaaccat
     1381 cactcgtcac catgtttctg aagtaggtat tgtagggccc gttggcgcca tgggaattgt
     1441 cgacactggc aaactgcgca taattgcctt cgaaaagatt gtggtaagaa tagttgccgt
     1501 gtaaaaccat gtcttccccg gtgctcacca atccaaaggc accttccttg cgtgactggt
     1561 aggcataatt gtaagcaaac acattgccac tggcgcctat ttgcagcaac atggcgtggc
     1621 gcaaacgcct gaacacattg ttttctaccc ggcaatcgga agtgccctgg tgcaaagtga
     1681 cgccataacc aaatccgcca ttgccaaagt caaaagcatc ctggaaataa ttgttgtgga
     1741 tgtacaaatg cgcactgaaa ctggcttcaa catgcgagaa attacacttc acgctttcca
     1801 cgccccgcac ccaagcgtga tgcgcatagc tgaattcaat attggccgtc cctccattga
     1861 gcggagaagt attcatcctt tctattcgca ggcactccac cccgctgaag gccacaggat
     1921 tgagttttct gaaaaccggc cccttggctg ccggataggg tatgcgtacc ggcgccgaca
     1981 gccgcacttg catggtagcg ggcaacaagg cctcaatgcg cactacctgc ccggtgcgac
     2041 gcaaggccca gtcgtcattc accaggctcg agtcgttttg gatcagtcgg atataatcgc
     2101 ccttggcaat tgcctcccaa ccagctgctg taatggtaat gagcgaatca ccggcggcaa
     2161 tgccattccc ggcaaccggg tagttcacct ccaattctgc cccttcaatg gaaatacacg
     2221 gtgtataaat atctgcgggt gctacaaaaa gacgggtacg atcattcccc aggcctttca
     2281 gcaccgtgtt ggaatgcagg taaatagtac gctgaaaata gtagtcgccg cttcccagta
     2341 gtacaaccgt gggttgcgta atggtatcga gaatggcctg cagggcgggt gcattgtcat
     2401 ggcctgcacc agtttgcccg gtaaagggaa caacacgata gctatcgggc atcttcaatt
     2461 gaaaaccggc cgcccaccaa tggttggcag ggggcacata cggcgattgc ccctgcaatt
     2521 ggtagccaac caaaaggcag cagagcagct tcagccaaaa atgttttaca aaatgacgca
     2581 taaagagagc agagcaaatt acatccacaa cggctataca tggcaatgtg gttgactgac
     2641 tttcctcaca acttatcatg gcattgtcaa tcaacccatt gccagcatcc tgccacagca
     2701 acaatgggac caaacttttc agccattctc attgtgcagt agaattccgc tcccgcacca
     2761 gtatttacct gggcatcaac tctttcaaca cgaaatagcg gtcttccaac tttgatggat
     2821 tggccacgct gttcacatca atccgcatga cgtgtgcacc cgataagctg ctgaaggcgg
     2881 gccacttcgg caatcccaaa ccattggggt tgccggtttg gatgaaattg acaaaatacc
     2941 cctgcaatac acctgacacc gtgaagtctt cgggctgcca gtcgtaaacg cggttggtgg
     3001 gcaggttgcc catggcatat tctatttctg cagaatgcac agcacccttg gctggtggcg
     3061 caggtgcttt ggctttgccg gtcgtgtctc gtatgatgcc gccggccagg ccggcctggg
     3121 cattgcccat ttcagggcgc atttgtggcc ttggccgcgc atagaggtac cgatataccg
     3181 gttttccgct attgccactg tgcacatgcg tgagcatcca ggtgccgaag ccaatgaaca
     3241 tatcgcctgc cagatcggtg gctgcctgtt ctgcttcctc atcagatgcc ggttggtaga
     3301 ctttgaggat tttttctgca ttcgcaccat ggatacgtgc cacgcctttg cggaaattct
     3361 caacggtggc aggaccatta cccaatatca tttgcggtcc ggattcctgc gtattccatc
     3421 cggccatcag gggcactttg gcctgctggc ccctggcaaa aatttcctgg ggcgattggg
     3481 gaaagaaata gccgtccacg caaaccggga aggcaccaaa ac
//
LOCUS       DATIQF010000429         2798 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_52813, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000429 DATIQF010000000
VERSION     DATIQF010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2798
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52813"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..592)
                     /locus_tag="VLL95_07070"
     CDS             complement(<1..592)
                     /locus_tag="VLL95_07070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38661.1"
                     /translation="MSNPSSLHPTYKSERIASLDTIRGISLFGILLMNITGFGLYKAY
                     FDPTNNGGSTGWDLNVWWMTMMFFEGTMRGMFSMLFGAGILLFTGRIIQNETGSTVTD
                     LFFRRLMWMILFGVIHCYLLLWDGEILYTYGIVGMFAFSFRHLKPKHLLIGAAIILLV
                     QTSFSVKYYFTNKEAFAQSTTAKAKQASGVALNKEET"
     gene            complement(669..1169)
                     /locus_tag="VLL95_07075"
     CDS             complement(669..1169)
                     /locus_tag="VLL95_07075"
                     /inference="COORDINATES: protein motif:HMM:TIGR02246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSR38662.1"
                     /translation="MKTKNYLVASLLVLFAVMLAACNTTETTPAAAAPAAPDMNKVKA
                     EIQALETAWAEADNMRDAKAIGALYADDAVTLVNNKPMISGKEAIIKDMEAAMATKPK
                     GSTIAFDVLDVFGDENTVTEVGKTTGKDSTGKVTYTGKYMAIWVKRDGKYLCIRDIGN
                     DDAKAQ"
     gene            complement(1231..1740)
                     /locus_tag="VLL95_07080"
     CDS             complement(1231..1740)
                     /locus_tag="VLL95_07080"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HSR38663.1"
                     /translation="MKKSNAIVITICAGLFLVAGCNNSQTSPTNIEKEITIEKIDTPE
                     YFLQRPEVEKLYGYSHAVKIGNDIKISGAVSMDDKGNLTAPGNMEQQMKNCYADLEKI
                     LQHYGCTFDDVVVENVFTTNMQEFIKVSGYRNGIYKKQFPTGTWLEVKGLALEGQLIE
                     IDMEVHKTK"
     gene            complement(1772..2254)
                     /locus_tag="VLL95_07085"
     CDS             complement(1772..2254)
                     /locus_tag="VLL95_07085"
                     /inference="COORDINATES: protein motif:HMM:NF025292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin-like domain-containing protein"
                     /protein_id="HSR38664.1"
                     /translation="MRKFVVTVACCLFLCFQLSAQTGQKDKGIVGTWRLVEFADYDST
                     SGKWVHRYGKNPRGYFIYTASGILSINISSDNPLKITEAEGKQKSVNVFDNITYQGFG
                     YFGTYTLELDKGRVIHHVKGGTIPWYTDTEQPRLIRLKGDTAIIGDNITNRRVLVRVE
                     "
BASE COUNT          686 a          623 c          666 g          823 t
ORIGIN      
        1 cggtttcttc tttgttgagt gctacaccgc tggcttgttt tgctttcgcg gtagtagatt
       61 gggcaaaggc ctctttattg gtgaaataat atttcacact gaaagaagtc tggaccaata
      121 aaataatagc ggcaccaatg agcaggtgct ttggcttgag gtgccggaaa ctgaaggcaa
      181 acatgcccac gattccatag gtgtagagga tctcgccatc ccacagcagc aggtagcaat
      241 ggatcacccc aaagaggatc atccacatca ggcggcgaaa gaagagatca gtgacagtgc
      301 tgccggtctc attttgaatg atgcgcccgg taaacaatag gatgcccgct ccgaacagca
      361 tggaaaacat gccccgcatg gtgccttcaa aaaacatcat cgtcatccac cacacattca
      421 ggtcccagcc ggtggagccg ccgttgttgg tgggatcgaa ataagctttg tataagccga
      481 agccggtaat gttcatcaac aggatgccga acaaggaaat acccctgatg gtatcgaggg
      541 aggctatgcg ctccgacttg taagtaggat gcaggctgga aggatttgac atggggattg
      601 attggatatg attcgtgaaa agaaggaaga cccggaaaaa ctgttcgatt ctccgggtct
      661 tcatttactt attgtgcttt ggcatcgtca ttgcctatgt cacggatgca taaatatttg
      721 ccatcgcgtt ttacccaaat ggccatgtac tttccggtat aagttacttt acctgtagaa
      781 tctttgccgg ttgttttacc aacttcggtt actgtgtttt catcgccaaa tacatctaat
      841 acgtcgaaag caatagtgct gcctttcggt tttgtagcca tagctgcttc catgtcttta
      901 atgatggctt ctttaccact gatcattggt ttgttgttga ccagtgtaac cgcgtcatct
      961 gcataaaggg ctccaatggc tttggcatcc cgcatattgt cggcctcagc ccaggccgtt
     1021 tccaatgcct ggatctctgc tttcacttta ttcatgtctg gtgctgcagg tgctgctgct
     1081 gcgggtgttg tttctgtggt attgcaggct gccagcatta ctgcaaatag caccagcaaa
     1141 gatgccacca ggtagttttt tgttttcatg atcgtgtttt ttgatttgcc tactctgagc
     1201 ggttttcggc taccccgttt gaatcagctt ttattttgtt ttgtgcactt ccatatcaat
     1261 ctcaatcaac tgcccttcca atgccaggcc ttttacttcc agccaggtgc cggtgggaaa
     1321 ttgtttttta taaatgccgt tcctgtagcc cgatacttta atgaactcct gcatgttggt
     1381 ggtgaataca ttttcaacta ccacatcatc aaacgtgcag ccatagtgct gtaagatctt
     1441 ttccaggtcg gcatagcagt ttttcatttg ctgctccatg ttgccggggg ctgttaaatt
     1501 gcctttgtca tccatgctta cggcacctga gatcttgatg tcgttgccaa tctttacggc
     1561 atggctgtaa ccatagagtt tctctacttc aggtcgctgc aggaagtact ccggtgtgtc
     1621 aattttttct atcgtgattt ctttttcaat gttggttggt gacgtttgac tgttgttgca
     1681 tccggctacc aggaaaaggc ctgcacaaat ggtgatgaca atggcattgc tttttttcat
     1741 gaccttgttt gttttaagtt gtattgaaat tttattccac ccgcaccagc accctgcggt
     1801 tggtgatgtt gtcgccgata atagcggtat ctcctttcag ccggatcagg cggggttgtt
     1861 cagtatcggt ataccagggt atggtgccgc cttttacatg gtgtatcacc cttcctttgt
     1921 ccaattcaag tgtgtaagtg ccaaagtatc caaatccttg gtaggtgata ttgtcgaata
     1981 cattcacgct tttctgtttg ccttcggctt cggttatttt gagcgggttg tcgctggaaa
     2041 tattgatgct taaaataccg ctggccgtat aaatgaaata gcctcttgga tttttaccat
     2101 agcggtggac ccatttacca gaggtggaat cataatcggc aaactctacg aggcgccagg
     2161 tgccaacaat gcctttgtcc ttctggcctg tttgagcgga taattgaaaa cacagaaaca
     2221 ggcagcaggc aacggttacc acaaattttc tcatgttgat gattttgacc tggtcacaaa
     2281 ccaggcatgg gcaatggagg gaggtggaca cagggaaatc tgtcgcaaaa tcacacacac
     2341 acttatccca tgtggaagag ggtaggggtc aggaaaacat acgaagttct aaatctaacc
     2401 tttagccacc agagttcaaa gcatattcct cgcttcaacc ctattttctg gaaagtggga
     2461 ataggcaggt attggctttc atcattttaa atggatacca caaatgccaa agaactgcag
     2521 ttggaacatg ctgtgccaaa accgatgcca cttcgaattg ctgtgagaag gcgaatggca
     2581 tagccatggt tgaaacatta ttgggtagat ctaacggtat atgcggcacg actggcgata
     2641 aggaatgcgc aaattgaacg atgcctttgt attgcttacc tcgccgagga gaatagatgt
     2701 gacctcgcaa cgactgtacg aaaagcagcc tagtttgaat acagttcaat tccagaaccg
     2761 aaacagcctg gtgaaaatga tcctgtcggt aaatgcag
//
LOCUS       DATIQF010000430         2871 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_52815, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000430 DATIQF010000000
VERSION     DATIQF010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2871
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52815"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1030
                     /locus_tag="VLL95_07090"
     CDS             <1..1030
                     /locus_tag="VLL95_07090"
                     /inference="COORDINATES: protein motif:HMM:NF013427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TraR/DksA C4-type zinc finger protein"
                     /protein_id="HSR38665.1"
                     /translation="GEITMASTKKVTKAPAKKAAPAKKAAPAKKAAPAKKAAAPAKKA
                     APAKKAAAPAKKAAPAKKAAAPVKKAAAPAKKAAPAKKAAAPAKPTKPAPAKKVEAPA
                     KKAAAPAKPAAPAKPEVKKPAPAPAAKPVVKAAPVKAAKTKAAKPAKPAKPAPAPKPA
                     IDEFKSTTPPPSQKKRPVPEDKTPVKMPPITAKGKVPYDPDFTVSVLDTPKEDNVQST
                     PLMRYSDSELAEFRELILRKLEAARKELAYLQGLITRKDDMGGDNDDNRYMTMEDGTL
                     SMEREQLSQMASRQIQFIDHLEKALIRIENKTYGICRVTGKLIDKARLRAVPHATLSM
                     EAKLGKNK"
     gene            complement(1132..>2871)
                     /locus_tag="VLL95_07095"
     CDS             complement(1132..>2871)
                     /locus_tag="VLL95_07095"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR38666.1"
                     /translation="VLSTVFSILSLGMLMPFLELIFVGKSGALATAGAANKGLQDWLS
                     QTMHDYANAHSPMSLLMLICGLMLTSIVLKNLFLYLSYYILNPLKNKIVTDLRSMMYD
                     KILQLPIGYFTEKRKGDLMSRITNDIAEVEGSVIGTLEGWIRDPLQILMNLAALMFIS
                     PQLTLFLLLMLPLVGFVIGRISRSLKKQSMEAALRQGETVSILDETLGGLRVIKAFTA
                     EQMLRLRFSKVNNELLTARNKIGYRRDLASPVSETMGVLVFCGILLYGGSLVLSKEIG
                     LSGAYFITYLALFYNIINPAKALSTSFYNMQKGSAAIGRIEEILMAPVVITDAPNAQP
                     LLKFNESIEFRNVGFKYDDVEILKNINLTVKKGTTVALVGSSGAGKSTLADLVPRFHY
                     VSSGELLIDGKNIKEYTLESVRSQMGIVTQEPILFNDTVAANIALSQPNASVSDIENA
                     AKVANAYRFVSTKEQGFETNIGDRGSKLSGGERQRLTIARAVLKNPPILILDEATSAL
                     DTESEKLVQDAINNIMKDRTTLVIAHRLSTVRHADEIVVMQKGEIVERGTHDALMDHS
                     GIYRRLVEMQEVK"
BASE COUNT          757 a          779 c          721 g          614 t
ORIGIN      
        1 aggagaaata acgatggctt ctactaagaa agtaaccaag gctccggcca aaaaggcggc
       61 tccggcaaag aaagcggcac ccgctaaaaa ggcagctcct gctaaaaagg cggcggctcc
      121 ggctaagaaa gcggcacccg ccaaaaaagc ggcagcccct gctaaaaagg cggctccggc
      181 caagaaagcg gcagctcctg tgaaaaaagc agcagcaccc gctaaaaaag cagccccagc
      241 caagaaagcg gcagcccccg ccaagccaac caagccagcg ccggccaaaa aagtggaagc
      301 tcccgccaag aaagctgcag ctcctgcaaa gcctgcagcc ccggccaagc ctgaggtgaa
      361 gaagccagcc ccagctcctg ccgccaagcc ggtagtaaaa gcagctccgg taaaggcagc
      421 aaaaaccaaa gcggccaaac cggccaagcc ggccaaaccc gctccggctc ccaagccggc
      481 gatagatgag ttcaagtcta ccacaccacc gccttcccaa aagaagcgcc cggtgcctga
      541 agacaagact ccggtgaaaa tgccccccat caccgccaaa ggcaaagtgc cttacgaccc
      601 cgacttcacc gtttccgttt tagatacacc caaagaagac aacgtacaat ccactccact
      661 catgcgttac agtgattctg aactggccga attccgtgaa ttgattttga gaaagctgga
      721 agcagctcgc aaagaactgg cctacctgca gggcctcatt acccgcaaag acgatatggg
      781 tggtgacaat gatgacaacc gctacatgac catggaagat ggtaccctga gcatggaacg
      841 tgagcaactg agtcaaatgg ccagccgcca gatccagttc atcgaccacc tggaaaaagc
      901 tttgatccgc atcgaaaaca agacttacgg tatctgccgt gttaccggca agcttatcga
      961 taaggctcgc ctgcgtgccg ttccccacgc tacccttagc atggaagcca agctgggcaa
     1021 gaacaagtaa gattcaaccg gaaaatatca ggaagccgat ctgcaacagc aggtcggctt
     1081 ttttattttg aataggaaaa ctcaggtctg aattcctgcg ccaggcagtg cttatttcac
     1141 ttcctgcatt tcaaccaacc ggcggtaaat gccgctgtgg tccatgagtg cgtcgtgggt
     1201 gccgcgttcc acgatttcac ctttctgcat cactactatt tcgtcagcat ggcgcacggt
     1261 gctcaggcgg tgcgcaatca ccagcgtagt gcggtccttc atgatattgt tgatggcatc
     1321 ctgcaccagc ttttcgctct cggtatccag tgccgaagtg gcttcatcca gaataaggat
     1381 cggcggattt tttaaaacag ccctggcgat ggtaaggcgt tgacgttcgc cgccgctgag
     1441 cttgctgcca cgatcgccaa tgttcgtttc aaatccctgc tctttggttg aaacgaaacg
     1501 ataggcgttg gccactttcg ctgcattttc aatgtcggaa acggaagcgt tgggttggct
     1561 caatgcaatg tttgcggcca ctgtatcatt aaacaaaatg ggttcctgtg ttacaatgcc
     1621 catttggctg cgcacacttt caagcgtata ctccttaatg tttttaccgt cgatcagcaa
     1681 ttcgccgctg ctcacgtaat gaaagcgggg cacaaggtcg gccagtgtgc tcttgccggc
     1741 accgctgctg cctaccaatg ccacagtggt tccttttttg acggtgagat taatgttttt
     1801 caagatctcg acatcatcgt acttgaatcc aacatttctg aactcaatgc tctcgttgaa
     1861 ctttaacagg ggctgcgcat tgggggcgtc agtgatgacc actggtgcca tcagtatctc
     1921 ttcaatgcgt ccaatggcgg cactgccttt ctgcatgttg taaaaggaag tggacagcgc
     1981 cttggcagga ttaatgatgt tgtaaaacaa agcgaggtag gtaatgaaat aggcaccgct
     2041 caagccaatt tctttgctca gcaccagcga gccgccatag agcagaatgc cacaaaatac
     2101 cagcacgccc atggtctcac tcaccggcga agcgaggtcg cgtcgatagc caattttgtt
     2161 gcgggccgtc aaaagttcat tgttcacttt cgaaaaacgc agccgcaaca tttgctcagc
     2221 agtgaaagct ttgatcaccc gaagaccacc cagtgtttcg tcgagaatag acacagtttc
     2281 tccctggcgc aaagcggctt ccatgctttg tttcttgagg ctgcggctga tgcggccaat
     2341 cacaaaaccc accagcggca gcatgagcag caaaaacaaa gtgagctgcg ggctgatgaa
     2401 catcagggct gccaggttca tgagtatttg caagggatcc ctgatccagc cttcgagtgt
     2461 gccaatcaca ctgccttcca cttcggcaat gtcgttggtg atgcggctca tcaggtcacc
     2521 tttccttttt tcagtgaaat agccaatggg aagctgcagg atcttgtcgt acatcatcga
     2581 cctcagatcg gttacgatct tgttcttgag ggggttgagg atgtaatacg ataaatagag
     2641 gaagaggttt ttgagaacga tgctggtgag cattaaaccg caaatgagca tcagcaaaga
     2701 catgggcgaa tgcgcattgg cataatcatg catggtttgc gacagccagt cctgtaatcc
     2761 tttgtttgca gcgccggctg tggccaatgc cccgcttttg cccacaaaaa tgagctcgag
     2821 gaaaggcatg agcataccca gcgagaggat ggaaaaaacg gtgcttaaaa c
//
LOCUS       DATIQF010000431         2156 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_37407, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000431 DATIQF010000000
VERSION     DATIQF010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37407"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..836)
                     /locus_tag="VLL95_07100"
     CDS             complement(<1..836)
                     /locus_tag="VLL95_07100"
                     /inference="COORDINATES: protein motif:HMM:NF024899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1-like domain-containing RNA-binding protein"
                     /protein_id="HSR38667.1"
                     /translation="MSQTLQAGQYYVLPIERIVTPGAYLRFGEEDVLLPNRYLPADAK
                     KGDEVEVFIHHDSENRLIATTAKPHAIVGEFAVMKVVSTSGPGAFLDWGLSKDLFVPA
                     SQQREPMKEGRSYLVYVYRDEKTGRVAATEWWNQYLKKDGKDLQAMQPVNLLVHRRTP
                     LGFAVIVDNMYEGLVHDADAVAGLKPGQRLTGFIKQVREDGKLDVVPGKRGYERITGE
                     PERILELLKQHKGALPYNDKSDPQDIYAFFGLSKKAFKMAIGALYKQRLIEILPGGIK
                     LIG"
     gene            complement(865..1083)
                     /locus_tag="VLL95_07105"
     CDS             complement(865..1083)
                     /locus_tag="VLL95_07105"
                     /inference="COORDINATES: protein motif:HMM:NF022577.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2892 domain-containing protein"
                     /protein_id="HSR38668.1"
                     /translation="MRQYFRKNMGTTDRIVRISFALLFFILYFSKTVTGTFGLVLLVL
                     GIAFIIIILFSFCPFYPLLGISTCKKKS"
     gene            complement(1195..>2156)
                     /locus_tag="VLL95_07110"
     CDS             complement(1195..>2156)
                     /locus_tag="VLL95_07110"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dipeptide epimerase"
                     /protein_id="HSR38669.1"
                     /translation="DNGVIGLGAANPFEEVVGESPQQTLTNLQQADWQPWMGRNIETY
                     EALIEEAWRLFPHQPGTVAAIDIALHDAWAQTRGVPLVDLLGRKHDALPTSVTIGIKG
                     VTETLAEAAEYAAMGFRALKVKTGLDPQEDAERMIRLHEVYGKSMQLRVDANQGYSFS
                     QLQSFLQMTAQVPLEVIEQPLPAGKENELLALAEADRRGLCADESLLDEAAAIRLSKP
                     PLPFGIFNIKLMKCGGIRSARQMAACAAPAGIQLFWGCNDESMASITAALHVAYSCAN
                     TRFLDLDGSFDLSRDFVEGGFSLRDGMMYLSDRPGLGLKRIGQ"
BASE COUNT          512 a          607 c          526 g          511 t
ORIGIN      
        1 ccgatcaact tgataccgcc gggcaaaatt tcaatcagtc gttgtttgta caaagcgcca
       61 atggccatct tgaaagcctt cttgctaagg ccgaaaaagg catagatatc ctgcggatcg
      121 cttttgtcgt tgtagggcaa agcgcctttg tgttgcttca gcaattcgag aatgcgttcg
      181 ggctcaccag ttatcctttc ataaccgcgt ttgccgggca ccacatccag tttgccatct
      241 tcccgcacct gcttgataaa gcctgtcagt ctttggccgg gcttcagacc tgccacggca
      301 tcggcatcat gcaccagtcc ttcatacatg ttgtcaacaa tcacggcaaa tcccagcggg
      361 gtgcgccggt gcaccagcaa attcactggc tgcatggcct gtaagtcttt gccatctttt
      421 ttcaggtatt ggttccacca ttcagtggcg gctacacggc cggtcttttc atcgcggtac
      481 acatacacca ggtaacttct cccctccttc attggctccc gctgctggct ggccggtaca
      541 aacaaatcct tgctaaggcc ccaatccaaa aacgcacctg gtccactggt gcttaccact
      601 ttcatcaccg cgaattcgcc cacgatggcg tgaggctttg cagtggtagc tatcaggcgg
      661 ttctcactgt cgtgatggat gaatacttct acttcgtctc cttttttggc atcggccggc
      721 aggtagcggt tgggcagcaa tacatcttct tcaccaaagc gcaggtaagc gccgggcgtt
      781 actatccgtt caatgggcaa tacataatac tgcccggctt gcaaggtttg tgacatgccg
      841 caaaggtagg gtgcgcctgc tgagtcacga tttcttctta caagtgctga tgcccagcaa
      901 gggatagaac gggcaaaaag aaaaaagaat gatgatgata aaagcaatgc ccagcaccag
      961 caacaccagg ccaaaggtgc cggttactgt tttgctgaaa tacaaaatga aaaacagcaa
     1021 cgcgaaggaa atgcgaacga tcctgtcggt ggtacccatg tttttacgga agtattggcg
     1081 catagcaaaa agaaactaag tggttaggaa tgcttcaaag agtatttaac aggtgggaaa
     1141 gcatataata gttgcaaacc tttcaaagga tatgataata agaaagctac ttcgtcattg
     1201 tcctattctc ttcaaaccca acccaggcct gtcgctgagg tacatcatgc catcccgcag
     1261 ggaaaagcca ccttccacaa aatcgcggct aaggtcgaag ctgccatcga gatcgagaaa
     1321 gcgggtattg gcgcagctgt aggctacgtg caaggcagcg gtgatgctgg ccatgctttc
     1381 atcattgcaa ccccagaaca attggatgcc ggccggggcg gcacaggctg ccatctgcct
     1441 ggcgctgcgg atgccaccac atttcatgag tttgatattg aaaatgccaa acggcaaggg
     1501 cggcttcgac aagcgaatgg cggcggcctc atccagcaaa gattcatcgg cgcacagccc
     1561 ccggcgatct gcttctgcca atgccagcaa ctcgttctct ttaccggccg gcaatggttg
     1621 ctctattact tccagcggga cctgcgccgt catttgcaga aaggattgca actgcgaaaa
     1681 actgtaaccc tggttggcat ccacccgcag ttgcatgctt tttccatata cttcatgcaa
     1741 cctgatcatt cgctcggcat cttcctgcgg gtcaagcccc gtcttcactt tcagggcccg
     1801 aaagcccatg gcagcatact ccgcagcttc tgccagcgtt tcggtcacgc ccttgatgcc
     1861 aatagtaacg gaagtgggca aagcatcgtg cttcctgccc aacaggtcca ccaacggtac
     1921 gcccctcgtt tgcgcccagg catcgtgcaa ggcaatgtcg atagcggcca ccgtgcccgg
     1981 ctgatgcgga aacaagcgcc aggcttcctc aatcaatgct tcatacgttt caatgtttcg
     2041 ccccatccat ggctgccagt ctgcctgctg caggttggtc agcgtttgct gtggcgattc
     2101 gcccaccact tcttcaaaag gattggcagc ccctaaaccg atcactccat tgtcga
//
LOCUS       DATIQF010000432         3094 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_174322,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000432 DATIQF010000000
VERSION     DATIQF010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3094
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174322"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            138..386
                     /locus_tag="VLL95_07115"
     CDS             138..386
                     /locus_tag="VLL95_07115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38670.1"
                     /translation="MSEGKNENRDQLQEPSGADAYALASLREKILQKIEDVQDSATLR
                     KVWSLLSETPAEQQPLQLSRHAAAIFEQYHETLTKLAQ"
     gene            386..766
                     /locus_tag="VLL95_07120"
     CDS             386..766
                     /locus_tag="VLL95_07120"
                     /inference="COORDINATES: protein motif:HMM:TIGR01550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
                     /protein_id="HSR38671.1"
                     /translation="MIAIQDILALHIASIEKFGGAHGIRDLGLLESAVARPFQTFGGE
                     ELYPHPTDKAAALCESLIVNHPFTDGNKRIGFIALAALLLEYGLKLTATQQEAYDTMI
                     SVSTGQLRFEGLVDWLKGHVVQVG"
     gene            1169..>3094
                     /locus_tag="VLL95_07125"
     CDS             1169..>3094
                     /locus_tag="VLL95_07125"
                     /inference="COORDINATES: protein motif:HMM:NF026255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HSR38672.1"
                     /translation="MTYQKFLLSFFLIGFVGLSAFSQSKIGVVKGNVVDTASRKFLAS
                     ATINVLDAKDSTLVAFGRSKDNGSFEISRLATGKFLLMVTYTGFAKSVQEFSITSDKP
                     VMEFVAVPMTSNATLADVTVVAAPVQIKGDTVEFNAQSFKVAKPNAMVEDLLKRLPGV
                     EVDKDGNIKANGQDVKRILVDGKQFFGDDPKLATKNLSADMVNKVQVFEKKTDKSEFT
                     GFDDGNSEPTINLTLKSDKRQGVFGRVAAGYGTDDRYQANANVNSFKKGEQLSFIGQA
                     NNINQQGFSVMDALSFSGGSGFGGGARGGTTAMGGGSGLSIAGFGGNQQGITATQALG
                     ANYNNFKSSKLDLNSSYFFNGTQLDNAYDLKRKTFIGDTSQLYREPGKTSRDNFNHRF
                     NMAFDWKIDSMNSIIARPNFTWQNTNSNTTKTYQTFGESVALLTDGQNKTESKSQGYN
                     LNANALWRHKFAKAGRTFSTQLTYGRNESDADGNQFTINTQYKGSVINRSDTLRQVNT
                     TKSITQNYAVDLTYTEPMSRRSLIEFNAYYRDNTSTNDRKTWDYNKLTGAYDLLNQRL
                     TNFFDNEYIYAGGGLTFKENRTGWNYTIGAKAQQATLTSVVQGKSEPISQSFFNILPS
                     AQVQIGKNRYRNFRLFYN"
BASE COUNT          853 a          794 c          734 g          713 t
ORIGIN      
        1 gacgagggat gatattgagt atttgttcag ttaagaataa ggattgcttt gatctatttt
       61 ggagtgatag ttgctgcatg ccaactattg taatggcaga aaagggataa atttgatgta
      121 atcgtaaaat ctcttttatg agcgaaggca agaatgaaaa ccgcgatcag cttcaggaac
      181 cctcaggtgc cgatgcttac gcattagcaa gtctgcggga aaagattttg caaaaaattg
      241 aagatgtgca ggattcagca accttacgaa aagtgtggag cctgctgtca gaaacccctg
      301 cggagcagca gcctttgcaa ctatcgcggc atgcggcagc catttttgag cagtaccatg
      361 aaacgctgac caaactggcg cagtagtgat tgctattcag gatatactgg cacttcatat
      421 tgcctccatt gaaaaatttg gaggtgcaca tggcattcgt gacctgggct tgctggagtc
      481 agccgttgcc cggcctttcc agacttttgg aggcgaagag ctttaccccc atcccacgga
      541 taaggctgcc gcgttgtgtg aaagcctgat tgtgaaccat ccatttacag acggcaacaa
      601 gcgaattggt tttattgctt tggcagccct tttgcttgag tatgggttaa agctcactgc
      661 cacccagcaa gaagcttatg acactatgat ttctgttagc accggccaac tccgttttga
      721 aggattggtg gattggttga aaggacatgt cgtgcaggtt ggttgaacct gattttagat
      781 tacacaactg ccttttttga agtactcttc caatttcgga ctactcttcc aaattttcgc
      841 ctaccgcatg atctgttagc atacgtggag gacaagataa tccaactaca ggaaagaaac
      901 gaacgctggc cgaggaactc attgccgacg acgccggctt tgtgaagaaa ctgacgaggg
      961 atgatattga gtatttgttc agctaagagc tcatattctt caaattcagt aaaggcggcc
     1021 gtttggcgcc tttttttcat tccgccgatc cgcaccagag accgttgctg taatcattaa
     1081 ccttgattaa caatacttcc actgcactta accctttcgg cccttgtgtg ttaatagttt
     1141 tgccctcgca atagcaaata ctgcacacat gacgtatcag aaatttctac ttagcttttt
     1201 ccttattggt tttgttggtc tcagcgcctt ttcccaatcc aagattggtg tggtgaaagg
     1261 caacgtggta gacacggcct ccaggaaatt cctggccagt gctaccatca atgtactgga
     1321 tgccaaagac agcacgctgg tggcttttgg ccgcagcaaa gacaatggct cctttgaaat
     1381 ctcccgcctg gctaccggca agttcttgct gatggtcacc tatacaggct ttgccaaatc
     1441 ggtacaggaa ttttccatta ccagtgacaa acctgtaatg gaatttgtgg ccgtacccat
     1501 gaccagtaat gctacgctgg ccgatgtaac agtggtagca gcgccggtgc agatcaaagg
     1561 agataccgta gagttcaatg cgcaaagttt taaagtggcc aaacccaacg ccatggtgga
     1621 agacctgctg aagcgcctgc ccggtgtgga agtagacaag gatggcaaca tcaaagccaa
     1681 tggccaggat gtaaaacgca tattggtgga tggcaagcag ttttttggcg acgatcccaa
     1741 actggccacc aagaacctga gcgccgatat ggtgaacaaa gtgcaggtat ttgaaaagaa
     1801 aaccgataaa agcgagttta ccggctttga cgacggtaac agcgaaccca ccatcaacct
     1861 cacactcaaa agcgacaagc gacaaggcgt atttggcagg gtagccgccg gctacggtac
     1921 agacgaccgc taccaggcca acgccaacgt gaacagtttc aagaagggcg aacaactttc
     1981 attcattggc caggccaaca acatcaacca gcaaggcttt agtgtaatgg atgcgctcag
     2041 cttcagtggt ggcagcggtt ttggtggtgg cgcccgtggt ggtaccactg ctatgggtgg
     2101 cggatcaggt ctcagcattg ccggctttgg cggcaaccag cagggcatta ctgccacgca
     2161 ggccctgggt gccaactaca acaatttcaa aagcagcaaa ctcgacctca acagcagcta
     2221 tttcttcaac ggcacacagc tcgataacgc ctacgacctg aaacgcaaaa cattcatcgg
     2281 cgataccagc cagttgtacc gggagccggg aaaaaccagc cgcgataact tcaaccaccg
     2341 tttcaatatg gcgttcgact ggaagataga ttctatgaac tctatcattg cccgacccaa
     2401 tttcacctgg caaaacacca acagcaacac taccaagact taccagacat ttggcgaaag
     2461 cgtggcactc ctcacagatg gtcagaacaa aacagaaagc aaaagccagg ggtataacct
     2521 caacgccaat gccctctggc gtcacaagtt tgccaaggcg ggccgcactt tctccaccca
     2581 gctgacctat ggccgcaatg aaagcgacgc cgacggaaac cagttcacca tcaataccca
     2641 gtacaaaggc tctgttatca accgcagcga tacccttcgc caggtcaaca ccaccaaatc
     2701 catcacacag aactacgcgg tagaccttac ctacaccgaa cccatgagca gaaggtcgct
     2761 cattgagttc aatgcttatt accgcgacaa caccagcacc aatgaccgca agacctggga
     2821 ctataacaag cttaccggcg catatgacct gctcaatcag cggctcacca actttttcga
     2881 caacgaatac atttacgccg gcggtggtct taccttcaag gaaaaccgga ccgggtggaa
     2941 ctacaccatt ggtgccaagg cgcagcaggc tacactcacc agcgtggttc agggcaaatc
     3001 ggaacccatc tcgcaaagct tcttcaacat tttgcccagc gcccaggtgc agattggcaa
     3061 aaaccgctat cgcaacttcc gcctgtttta caat
//
LOCUS       DATIQF010000433         2872 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_83181, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000433 DATIQF010000000
VERSION     DATIQF010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2872
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83181"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..236)
                     /locus_tag="VLL95_07130"
     CDS             complement(<1..236)
                     /locus_tag="VLL95_07130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38673.1"
                     /translation="MKTSWILIPAVCLHFAACKKETINTTISNPVDYTQQMAPVSTRY
                     SLEQAMSDNGQLMTIAFSGLAFITGSDGADAFFPP"
     gene            complement(310..1692)
                     /locus_tag="VLL95_07135"
     CDS             complement(310..1692)
                     /locus_tag="VLL95_07135"
                     /inference="COORDINATES: protein motif:HMM:NF025600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YHYH protein"
                     /protein_id="HSR38674.1"
                     /translation="MRKHFLWMMYFMLPVMAMAHAGGHYKPGDGTTFHHWTLQSGKEV
                     KGNFLMFQDNTIWVEKEKGVVQPLQLDDLCKEDQAFALVHILKIVRSNFIENPPAAPT
                     TNEPFEKPMLQMPWFGLLYLLASVFFFVMLTQLTGRYQRWKVSYVLSCFLGYLFLLAC
                     SKSKTTTPPVTNDVIPKTSAGFIDSAFSAFKPPLTTSSDATYYYVASNGFPNHNMMVG
                     ITSWQQQVPISQSYSGSNSWSIPLQPVYASVPLSTKTNLMKGAVALAVNGIPIFNALN
                     NRGEDSYRIGELDNWGGHCGRADDYHYHAAPLHLETINQLKPIAFVLDGFAVYGSKEP
                     DGTAMTALDTCHGHKIGQYVYHYHGTSNYPYVVGAMRGKVALDPATPAPENQILPQAF
                     AKGTRPATTPLNGAQITDFVKQGDNGYLLTYRIGTKNGYVQYSWDASNKYTFRLTDTS
                     GAVTVNVYQR"
     gene            complement(2061..2134)
                     /locus_tag="VLL95_07140"
     tRNA            complement(2061..2134)
                     /locus_tag="VLL95_07140"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2098..2100),aa:Asn,seq:gtt)
     gene            2246..>2872
                     /locus_tag="VLL95_07145"
     CDS             2246..>2872
                     /locus_tag="VLL95_07145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38675.1"
                     /translation="MNSRFASLISWVLFDGTIAVNALANILPINGLNTGQVSALYPNA
                     FVPDGKTFAIWSVIYLWLLLFVAYTSVLAFQSKATVANRQLVQSISPLFWLTCLFNGT
                     WILAWHHLQTGLSLIIMLALLITLLAIFNQTVLAKPAITAAARLLVVVPFTIYFAWIC
                     VATIANSTALLVQLQWSGWGLSAATWSIIMMAVATLLAVFITWRHRQTG"
BASE COUNT          684 a          725 c          701 g          762 t
ORIGIN      
        1 ggcgggaaaa aggcatcagc accatcgctg ccggtaataa atgccagtcc gctaaaagca
       61 atggtcatca gctgaccgtt gtcgctcatg gcctgttcca ggctgtagcg agtgctcacc
      121 ggcgccattt gctgggtata atctaccggg ttgctaattg tggtattaat ggtttctttt
      181 ttgcaggctg caaagtgcaa gcaaacagcg gggatcagta tccatgaagt tttcatatcg
      241 ttgattttac attgtctgtt tattgttatt aatctcggtt gcggcatcat aattggtcga
      301 agttgcccct catcgctggt aaacattcac tgttacggca ccggacgtat ctgtcagcct
      361 gaatgtgtat ttgttgctgg catcccaact gtattgcaca tagccatttt tggtgccaat
      421 acggtaggtg agcaaatacc cattgtcgcc ctgctttacg aaatccgtta tctgcgctcc
      481 gttcaatggc gtggtagctg gtcgtgtccc tttggcgaat gcttgtggta agatctgatt
      541 ttcaggagcc ggggtggcgg ggtccagcgc aaccttgccc cgcatggcgc ctactacata
      601 agggtagttg ctggtgccat ggtagtggta cacatattga ccaattttgt gaccgtggca
      661 ggtatccagc gcagtcattg cggtaccatc gggttctttg cttccgtata ccgcaaaacc
      721 atccaggaca aaggcgatcg gtttcaactg attgatggtt tcgaggtgaa gcggcgctgc
      781 gtgataatgg taatcgtctg ctcgtccgca atgcccgccc cagttatcca gctcgccaat
      841 cctgtatgaa tcttcacccc tgttgttgag cgcattaaag atgggaatgc cgttcactgc
      901 caatgccacg gcccctttca tcaggttggt tttggtggat aagggtacac tggcatacac
      961 gggctgcagc ggaatggacc aactattgct gcccgagtaa gactgcgaaa taggcacctg
     1021 ttgctgccag ctggtgatgc ccaccatcat gttgtgattg ggaaatccat tggaagccac
     1081 ataataatag gtggcatcgg aggaggtagt gaggggtggc ttgaaggcgg aaaaggcgga
     1141 atcaataaag cctgccgaag tttttgggat gacatcattg gtcaccggag gtgttgtagt
     1201 cttgcttttg ctgcatgcca gcaaaaacag gtatcccaaa aagcaagaca acacgtagga
     1261 aactttccac ctctgatacc ggcctgtcaa ttgcgtaagc atcacgaaaa agaaaacact
     1321 ggccagcaaa tacagcagtc caaaccatgg catttgcagc atcggctttt caaaaggctc
     1381 atttgttgtt ggcgccgccg gtggattttc gatgaaattg gaacggacaa ttttcagaat
     1441 gtgtaccaag gcaaatgcct ggtcctcttt gcacaggtca tccagctgca atggctgcac
     1501 cacacctttt tctttttcta cccaaatcgt attatcctga aacatcagga aattcccttt
     1561 tacctcctta cctgattgta aggtccaatg atgaaaggtg gttccgtcgc cgggtttgta
     1621 atgacctccg gcatgtgcca tggccattac tggcaacatg aaatacatca tccacaaaaa
     1681 gtgctttctc atatcctacg gttggagtcg tatgaactcg attaaaagaa ccagaagctc
     1741 ttatgatgta cagcactctt gtattacgaa agactgaagt gcaccacgct tttagtggca
     1801 gttggactgg aaatcgttaa agtagtttaa caacaagtgg ttatttgaaa aaaatcctgc
     1861 ggtcaaggaa accgctggac acccctgtga catttatgaa aaggtgagaa agaaagcaaa
     1921 agctaacaca gcccgccacc attctccttt ttgcaaagcc attaaaacag gcatgtagta
     1981 attggcctgt actgtcgagt ataaaaaact aaaccgcgaa ctgtacaaat gaaaaagccg
     2041 ccattcggcg gctcttcaag ctccccctgc tggacttgaa ccagcgaccc tctgattaac
     2101 agtcagatgc tctaaccaac tgagctaagg aggaatttcc ctttcggggg tgcaaaaata
     2161 aggggtcatt gcttttgacc aaacaaaaat tttggagcgt ttgttacctg ctggtacgca
     2221 ccagtttaca ccctaatctt gctctatgaa cagccgcttt gcctctttga tttcctgggt
     2281 cttgtttgac ggtaccatag ccgtcaatgc cctcgccaat atacttccca tcaatgggct
     2341 caataccggg caggtatcgg ccctgtaccc caatgccttt gtgcccgatg gcaaaacctt
     2401 tgccatctgg tctgtcattt acctgtggct gctgcttttt gtagcctata cttcggtgct
     2461 ggcattccag tcgaaagcca ccgtggccaa ccgccaactg gtacaatcca tcagtccgct
     2521 gttctggctt acctgccttt tcaacggcac ctggatcctg gcctggcatc atttgcaaac
     2581 ggggctcagc ctcatcatca tgctggcgct gctgatcacc ttgctggcca tatttaacca
     2641 aacggtattg gcaaagccgg ccattaccgc ggccgccagg ctgctggtgg tggtgccttt
     2701 caccatttat ttcgcctgga tctgtgtggc caccattgcc aacagcaccg ccctgctggt
     2761 gcaactgcag tggagtggct ggggcctgtc cgctgctacc tggtccatca tcatgatggc
     2821 cgttgccacc ctgctggccg ttttcattac ctggcgtcac cggcaaacag gc
//
LOCUS       DATIQF010000434         1504 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_128936,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000434 DATIQF010000000
VERSION     DATIQF010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128936"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..880)
                     /gene="asnB"
                     /locus_tag="VLL95_07150"
     CDS             complement(<1..880)
                     /gene="asnB"
                     /locus_tag="VLL95_07150"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HSR38676.1"
                     /translation="MCGIAGIINLNGRPVAESDLRRMTDSLRHRGPDGEGFYTSENVG
                     FGHRRLAIIDLSDAGKQPMQYMGCTITYNGEIYNYTELRETLQKKGYGFHTATDTEVL
                     LAAYKHWGTDCVNHLNGMWAFAIHDPANGKLFCSRDRFGEKPFYYSERDNRFVFGSEI
                     RAVHAALSNKPAPNEVMMARFLVFEQAEHIRETFFHDVFKLPAAHNLVVDLRNGSIHI
                     EQYYSPRRVNTWQVVSEQDAVEELRTKLRKSVALRLRSDVEVGTCLSGGLDSSSIAAF
                     ASALYNPDVQHAFTGIT"
     gene            complement(923..>1504)
                     /locus_tag="VLL95_07155"
     CDS             complement(923..>1504)
                     /locus_tag="VLL95_07155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38677.1"
                     /translation="SSSVSIKRFTNLGMAGEERQRTVERLLSINRDSLLANPRLRETY
                     LSNVDFLSVNVNKIKEQPGGPEDIVLEDGDIIEIARSSSLVRVSGEVYHPTSLPYEKG
                     ANAHYYIKRAGNYTSSARRSRAFVIYPDGRSESVKKFLFFKSYPSVTARSEIFVPSKA
                     LEGKRGLSTTEWIAISSILASLATIFVTLINNL"
BASE COUNT          371 a          392 c          346 g          395 t
ORIGIN      
        1 ccgtaatgcc ggtaaaagca tgttgcacat cagggttgta caacgctgat gcaaaggcag
       61 caatcgatga actatcaagc cccccgctca ggcaggtgcc cacttccaca tcgctgcgca
      121 gccggagcgc tactgatttt ctcagcttgg tacgcagctc ttccaccgca tcctgttcgc
      181 ttactacctg ccatgtattt acgcggcggg gcgaataata ctgttcaatg tggatggaac
      241 cgttacgcaa atcgacaacc aaattgtgag cagcaggaag cttgaaaaca tcatggaaaa
      301 aagtttcccg gatatgttcg gcctgctcaa acaccaggaa ccttgccatc atcacttcat
      361 tgggtgcagg cttgttggat agggcagcat gtactgccct tatttcagaa ccaaatacaa
      421 acctgttgtc cctttcactg taataaaaag gtttctcccc aaagcggtct ctcgaacaaa
      481 acagtttccc atttgccgga tcgtgaatgg caaatgccca catgccgttc aggtgattca
      541 cgcaatcagt tccccaatgc ttataggctg ccagcaacac ttccgtatcc gtggcggtat
      601 gaaacccgta cccttttttc tgcaatgttt cccgcagttc cgtgtaattg tagatctccc
      661 cgttgtaagt gatggtacac cccatgtact gcatgggctg cttgccggca tcactcaggt
      721 cgatgatagc aaggcgacga tggccaaatc caacattttc gcttgtgtaa aatccttcac
      781 catcgggccc ccgatggcga aggctatccg tcattcttct caagtcactt tcagcaaccg
      841 gtcttccgtt gaggtttatt atgccggcaa ttccgcacat gggtatcagg aatgtagttg
      901 ctggaagtgg gtaaaaatct ctttacaggt tattaataag cgtaacaaaa atggtggcca
      961 ggctggcgag aatggatgaa atggcgatcc attctgtggt gctcagccct ctttttcctt
     1021 caagggcttt cgatggtaca aaaatttcac tccgggcagt tacagagggg taggacttaa
     1081 aaaacaagaa ctttttgacc gattctgaac gaccgtcagg atagatcaca aaggcccggc
     1141 tacgacgggc actactggtg tagtttcccg cccgtttaat gtagtaatga gcattggctc
     1201 ctttttcata tggcaatgag gtaggatgat aaacctctcc actaacccgc accaggctgg
     1261 atgaccttgc tatctcgata atgtctccat cctccagcac aatgtcttcg ggcccgccag
     1321 gttgctcttt tattttattg acattcacac tcagaaaatc gacattgctg agataggttt
     1381 ctcgcagccg cggattggcc agcaatgaat cccggttgat ggacagcaac cgctccactg
     1441 tgcgttgtct ttcctctcct gccattccca ggttggtgaa acgcttgatg gaaacagaac
     1501 tgct
//
LOCUS       DATIQF010000435         3511 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_52881, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000435 DATIQF010000000
VERSION     DATIQF010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3511
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52881"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            185..484
                     /locus_tag="VLL95_07160"
     CDS             185..484
                     /locus_tag="VLL95_07160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38678.1"
                     /translation="MLAGLEILSNTKKNYFLAAFLGAAFLAAFFGAAFLAAAFLGAAF
                     LAAAFLGAAFFAAAFLGAAFLAAAFFGAAFLAAFFGAAFLAAAFLAVAMLFTFNG"
     gene            complement(622..876)
                     /gene="rpmA"
                     /locus_tag="VLL95_07165"
     CDS             complement(622..876)
                     /gene="rpmA"
                     /locus_tag="VLL95_07165"
                     /inference="COORDINATES: protein motif:HMM:TIGR00062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HSR38679.1"
                     /translation="MAHKKGEGSVKNGRDSQSKRLGVKIYGGQPAVSGNIIVRQRGTV
                     YHPGKNVSLGKDFTIFATADGVVEFKKGKENRTFVSVITA"
     gene            complement(918..1223)
                     /gene="rplU"
                     /locus_tag="VLL95_07170"
     CDS             complement(918..1223)
                     /gene="rplU"
                     /locus_tag="VLL95_07170"
                     /inference="COORDINATES: protein motif:HMM:NF013025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HSR38680.1"
                     /translation="MFAVVKIAGQQFKVQEGQNLYVPHIEGKTGDKVELNEVLLLDRD
                     GAVQVGADVKATVKAEIVNELVQGDKVIAFKMKRRKGFRKKHGHRTHYTQIKIESIA"
     gene            1408..2925
                     /locus_tag="VLL95_07175"
     CDS             1408..2925
                     /locus_tag="VLL95_07175"
                     /inference="COORDINATES: protein motif:HMM:NF015291.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GH3 auxin-responsive promoter family protein"
                     /protein_id="HSR38681.1"
                     /translation="MNLKSLLARPFAGYIHKQIQKSRETAVADQEKIFKQLLEVGRNT
                     EFGKDHRLAEVKSLAEYQQAVQIRDYEAFKPYIEKVKEGRHNVLWKGKPIYFAKTSGT
                     TSGVKYIPITRDSIPNHINTARNALLCYMAESGNYGFANGKMIFLSGSPELDRVGGVP
                     TGRLSGIVNHHVPAYLRRNQLPSYETNCIEDWETKLDKIVEETIAQNMTLISGIPPWM
                     QMYFDRLVEKSGKPVGELFPHFSVLVHGGVNFEPYKAKLFHSIGRQVATIETFPASEG
                     FMAFQDTQHDEGLLLNTNSGIFFEFVPANEIFDEHPTRLSLSQVQAGVNYAIIINSNA
                     RLWSYNIGDTVKFVSLNPYRLVVTGRTKHFISAFGEHVIGEEVEAALLSVAEQFGARI
                     VEFTVAPYIATGEGQSYHEWFVEFEETPADLDGFATAVDNALRNKNVYYDDLITGNIL
                     QRLQMNVMKPQGFINFMKSVGKLGGQNKVPRLSNDRKIADQLAPFVLQSNRQAAL"
     gene            2949..>3511
                     /locus_tag="VLL95_07180"
     CDS             2949..>3511
                     /locus_tag="VLL95_07180"
                     /inference="COORDINATES: protein motif:HMM:NF014700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38682.1"
                     /translation="MTTTHKKRIAIFGSTGSIGTQALDVIAANPDKFSAEILTAQTND
                     ELLVAQARQFDPNCVVIGDETKYQKVKEGLKDTNVKVFAGEDALVEAAAMDCYDMMLA
                     SIVGYAGLRPTLQAVEMGKAIGLANKETLVVAGDIVMRKAAEKKAPIIPVDSEHSAIF
                     QCMVGELRNPIEKIILTASGGPFRGKKP"
BASE COUNT          960 a          797 c          842 g          912 t
ORIGIN      
        1 gtcatttctg ccaattgctg tggcagtttt tctatttgaa aagccgcgac agagtagctt
       61 ttggttttaa aactgttttc accgttgatg tccattagtt tagccagcag cgaaaagtga
      121 tcggcaagtt ggtagttgtc cataatgcaa tggtaagaac tgtgtagaaa caaaaagtcc
      181 tgcaatgctt gcaggacttg agattttgag caatacaaag aagaattact tcttagcggc
      241 tttcttagga gcagctttct tagcagcctt ctttggagca gccttcttag cagcagcttt
      301 cttaggagca gccttcttag cagcagcctt tttaggagcg gctttttttg cagcagcttt
      361 cttaggagcg gctttcttag cggcggcttt ctttggagca gctttcttag cggctttctt
      421 tggagcagct ttcttagctg cggctttttt agcagttgcc atgcttttta catttaatgg
      481 ttagtaaata atgcttcgta aaaataacga gaattttttt gttccaaata attttattca
      541 ctcgatatcc accatgcaaa aaaagagacg gtgcactgca ccgtctcttt ttgaaaatat
      601 gtcgctaaat gattagtgca attatgcagt aatcactgaa acaaatgttc tgttttcttt
      661 tccttttttg aattcaacca caccatcagc agtggcgaaa atggtgaagt cttttccaag
      721 acttacattc ttaccaggat gataaacggt accacgctga cgaacgatga tgttgccaga
      781 tacagcaggc tgaccgccat agatctttac accaaggcgc ttgctttgag aatcgcgacc
      841 attttttacg gagccttcac cttttttatg tgccataaca aaaagaaatt ttggagttga
      901 aataattact gcatcaatta ggcgatgctt tcaattttga tttgggtgta atgagtgcga
      961 tggccgtgct tcttgcggaa acctttcctt cttttcattt tgaaggcgat caccttgtca
     1021 ccctgaacca gctcattcac gatttctgcc ttcacagttg cctttacatc agcacctacc
     1081 tgtaccgcgc catcgcgatc cagcagcaat acttcattca attcaacctt atcgccggtt
     1141 tttccttcga tatgaggaac gtacaggttt tgaccttcct gcaccttgaa ttgctgaccg
     1201 gctatcttta caactgcgaa cataatcttc aaaatttagg gacgcaaaag taggagtttt
     1261 actcacaagt acaacaaaaa atttataaaa taagatcaaa tcctactgcg tacctgtgta
     1321 aattgcccgg gattttttaa ccaacaatgg gcctccagtc cggcaagtat agtttgttgc
     1381 cggatcagct gccctcaaaa gtgcgtcatg aacctgaaat cgttgcttgc aaggcctttt
     1441 gcgggatata ttcataaaca aatccaaaaa tcacgggaga cagccgtagc cgaccaggaa
     1501 aagatattca aacaactgtt ggaagtaggc cggaataccg aatttggcaa ggaccacagg
     1561 ctggccgaag taaaatcgct ggccgaatac cagcaggctg tacaaatacg tgattacgag
     1621 gcatttaagc catatattga aaaggtaaaa gagggacggc acaacgtgtt gtggaagggg
     1681 aaacccatct attttgccaa aaccagcggc accaccagcg gggtgaaata cattcccatt
     1741 acccgcgatt cgatacccaa ccacataaac acagcccgta atgcgctgct ttgttacatg
     1801 gccgaatcgg gtaattacgg ctttgccaac ggcaaaatga tctttctgag cggaagtccg
     1861 gaactggacc gggtgggggg cgtgcccacc ggaaggctca gcggcattgt gaaccaccac
     1921 gtgccggcct acctgaggcg caaccaattg cccagctatg aaaccaactg cattgaagac
     1981 tgggagacca aactggacaa aatagtagaa gaaaccatcg cccagaacat gacgctcatt
     2041 agcggcattc ccccctggat gcagatgtat ttcgacaggc tggttgagaa atcagggaaa
     2101 cccgtcggag aattgttccc ccatttcagc gtattggtgc atggcggcgt caatttcgaa
     2161 ccatacaagg ccaaactgtt tcacagcata ggtcgccagg tggccaccat cgaaaccttt
     2221 cccgcttcgg aaggattcat ggcattccag gatacgcagc atgacgaagg gttgctgctg
     2281 aataccaaca gcggcatatt cttcgaattt gttccggcca atgaaatttt tgatgagcac
     2341 cccacccgtc tttccctgag ccaggtgcaa gcgggtgtca actacgccat cattattaac
     2401 agcaatgcga gattgtggtc gtacaatatt ggcgacaccg taaaatttgt ttcgctcaat
     2461 ccttaccggt tggtggtcac tggccgaacg aagcatttca tcagcgcttt tggcgagcat
     2521 gtgattggtg aagaggtaga ggctgcattg ctttcggtgg cggaacagtt cggggccaga
     2581 atagtcgagt ttacagtggc gccctacatt gccaccggcg aaggacagag ctatcacgaa
     2641 tggttcgtgg aatttgaaga aacacctgct gatctcgatg gttttgcaac cgccgttgac
     2701 aatgcgttgc gcaacaaaaa tgtatattac gacgatttga tcaccggcaa tattttgcaa
     2761 cggttgcaaa tgaatgtgat gaagccgcag ggttttatca acttcatgaa atcggtagga
     2821 aaactgggtg gccaaaacaa agtgccccga ttgagcaacg acaggaaaat tgcagaccag
     2881 ttggctccat ttgtgttgca aagcaacagg caggctgcgt tataaggatt attgattgaa
     2941 aatttgatat gacaactact cataaaaagc gtattgcgat ttttggttca acgggatcaa
     3001 ttggcacgca ggcattggat gtgattgctg ccaaccctga taagttttcg gcggaaattc
     3061 tcacagcaca aaccaacgac gaattgctgg tggcacaagc caggcagttc gatcccaact
     3121 gtgtggtaat aggcgatgaa acgaaatacc aaaaggtaaa agaaggcctg aaggatacca
     3181 atgtaaaagt gtttgccggc gaagatgccc tggtggaagc cgctgccatg gattgctacg
     3241 acatgatgct ggccagcatt gtaggctatg ctggcctgcg acccaccctg caggcggtgg
     3301 aaatgggcaa agccataggg ctggccaata aagagaccct ggtggtggcc ggcgatatcg
     3361 tgatgcggaa agcggctgaa aagaaggctc ccatcattcc tgtggacagc gaacactctg
     3421 ccatttttca atgcatggtg ggtgagttgc gcaatccgat cgagaagatc atactcacgg
     3481 ccagtggcgg tccgtttcgg ggaaagaaac c
//
LOCUS       DATIQF010000436         1918 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_265842,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000436 DATIQF010000000
VERSION     DATIQF010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1918
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265842"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..984)
                     /locus_tag="VLL95_07185"
     CDS             complement(<1..984)
                     /locus_tag="VLL95_07185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38683.1"
                     /translation="MKTFASQPMLKSISISALVIASFLSFNAAAQVVPVGSGSYTTQL
                     PPADAAGRNKLPNGTPRLSGAALSKPVVTNDWWTGLLTFNDANLYNYPLSMKGSASGL
                     VVSYTFLGLGANDTRQPMGPEQPLVVGVSGLSGTYPTISDYSDWTVTASWNNAGRVFN
                     ATMGMGMPFVYCTKGSTDVASVVVNTGTVSVQGEMLLITNSISGANFAVYAPVGSTWS
                     NAGSTYTSTLAGKNYYSVAMLTAGANATTAANDYKQYAYVFPANTSVSWNYNDASATV
                     QSTFTVTADVKEGSGTNVLLGLLPHQWSHLSAGSAQPGPYAYATARGTMKML"
     gene            complement(1213..>1918)
                     /locus_tag="VLL95_07190"
     CDS             complement(1213..>1918)
                     /locus_tag="VLL95_07190"
                     /inference="COORDINATES: protein motif:HMM:NF024742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR38684.1"
                     /translation="AFSNKPFRKLCIATFFIFNAFNTVAGFTFFIVVYYLFDGNTEAA
                     GVWPTLFGCGGALATTFIVIPIVARIAKRMEKKKAFLLCQGISIFGYILFWFLFIPGK
                     PYMFLFALPFFSFGIGSLFTLMMSMTADVCDMDELESGKRREGVFGAIYWWMVKFGFA
                     IAGLLTGVLMSAVAFKAGAPTQAEGAFTGLRLFFSRVPIMGTLIAIWVMWDYDLSEEK
                     ANQIKDELARRKANAA"
BASE COUNT          520 a          468 c          461 g          469 t
ORIGIN      
        1 cagcattttc atagtgcctc ttgcagtagc ataagcatag gggccgggct gtgccgaacc
       61 ggcgctgagg tgggaccatt ggtgaggcag caatcccaac agaacattgg tgccgcttcc
      121 ttcttttaca tccgcggtta cggtgaaagt ggattgcacg gtagcggagg catcattgta
      181 attccagctg actgaggtat tggcgggaaa aacataagcg tattgtttgt agtcattggc
      241 cgcggtggta gcattggcac cagccgtcaa catggccacg gagtaataat tttttccggc
      301 cagtgtagaa gtataagtgg agcctgcatt cgaccaggta gatcctacgg gtgcatacac
      361 cgcgaaattg gcgccactga tggagttggt gatgagcagc atttcgcctt gtacggaaac
      421 agtgcccgta ttcaccacaa ccgaagccac atctgtgctg cccttggtgc aatacacaaa
      481 tggcatgccc atgcccatgg tggcattgaa tacacgaccg gcattattcc agctggccgt
      541 tactgtccag tcggaataat cagaaatggt aggataggtg cccgacaaac cgctcacgcc
      601 cactactaac ggttgttccg gacccatggg ctggcgggta tcgttggcgc ccagccccag
      661 gaaagtatag ctcactacca gcccactggc acttcctttc atcgacaaag gatagttgta
      721 caagttggca tcattgaaag tgagcaggcc tgtccaccaa tcgttggtta ccacgggctt
      781 gctcaaagcg gcgcccgaaa gcctcggtgt tccgttggga agcttgtttc tgccagcggc
      841 atcagccggc ggcaactgcg tagtgtagct gccacttccc accggaacga cctgggcagc
      901 tgcgttgaat gaaaggaagg aagcaataac cagggcactt atgctgatgc ttttcagcat
      961 tggttgtgat gcaaatgttt tcatgtttga tttttcagat ataaaccgtg ggcatcacaa
     1021 agaatcatgg cctgaataat gccgttattg tcagtattga tgggtagtcg aacgctgcct
     1081 actgtattca acagcagcag ggtgcggcaa ctgttatgcg ttcaattttt ggtttgttac
     1141 aatttgatta ggttgataac cagtcgccct ttacgttgtg cactcaccgt ttgggtaaga
     1201 cggaaatagg cattaagccg cgttagcttt cctcctggcc aactcgtctt taatttggtt
     1261 ggctttttct tccgagagat cgtaatccca catcacccat atcgcaatca gggtgcccat
     1321 gatgggaacc cgggaaaaga aaagcctcaa accggtaaac gctccttctg cttgcgttgg
     1381 agcaccagct ttgaaagcaa cagccgacat cagcaccccg gttaatagtc cggctatggc
     1441 aaatccaaac ttcaccatcc accagtaaat ggcgccaaaa accccttctc ttcttttacc
     1501 cgattctaat tcgtccatgt cgcaaacatc tgccgtcatc gacatcatca acgtgaatag
     1561 gctcccgatc ccaaaggaga aaaatggaag cgcaaataag aacatgtatg gttttcctgg
     1621 aatgaaaaga aaccaaaaaa gaatgtaacc aaaaatggaa attccctgac aaagcagaaa
     1681 tgctttcttt ttctccattc tttttgcaat cctggcaaca attggaatca caataaaagt
     1741 ggtagctaaa gcgcctccgc atccaaacaa tgttggccaa acgccggcag cttctgtatt
     1801 tccatcaaac aaataataaa caacgataaa aaaggtgaag cccgcaacgg tattgaacgc
     1861 attaaaaatg aagaaagtag caatgcatag ttttctgaat ggcttgttag aaaaagcc
//
LOCUS       DATIQF010000437         2564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_144244,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000437 DATIQF010000000
VERSION     DATIQF010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144244"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..212)
                     /locus_tag="VLL95_07195"
     CDS             complement(<1..212)
                     /locus_tag="VLL95_07195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38685.1"
                     /translation="MFKVQDPLRGYLKQHGREMRHLVDYHDLRRFTYSVPLKDRHGKD
                     TMWETVSYDSREWEYLREVLVETYAAL"
     gene            361..990
                     /locus_tag="VLL95_07200"
     CDS             361..990
                     /locus_tag="VLL95_07200"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSR38686.1"
                     /translation="MPIEASRYADQHSSDLSPLLQEILQYTLAHHPHAHMISGQVQGL
                     MLQLISRMLQPKRILEIGTFTGFSALCLTEGMATGGQLITLEMREADAETAQQYFDRS
                     PFKDHIKLLQGDARTIIPSLNETWDLVFIDADKTSYIDYYEMVLPQMRTGGFLLADNV
                     LFHGEVLQDEVKGKNAKAIAAFNAHVQADPRTENVLLTIRDGLLLIRKL"
     gene            1064..2233
                     /locus_tag="VLL95_07205"
     CDS             1064..2233
                     /locus_tag="VLL95_07205"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSR38687.1"
                     /translation="MHPQTKAIRIQNELTNEMEHSSPLFLTSSFQFDSAEDMRDAFEE
                     KNDHNIYSRFINPTVREFIDKVCALEGAEDGFATATGMSAIFGTFMTFLSSGDHIISS
                     PAVFGSTHTILSKYMGRWGIQYSYADFSNPASVEAAIQPNTKMMYLETPTNPGLDIYD
                     LEWLGQLCKKHNIMLVVDNCFATPLLQRPIEYGADLVIHSATKWMEGQGRVLGGIVVG
                     KKELVREVYLFCRQTGPSLSPFNAWILSKSLETLDVRMQRHCDNAEALAQALEGHEKI
                     ALVKYPTLKSHPAYAIAQKQMSRGGGIVAFELKGGLEAGIQFMNSLEMLTLTSNLGDT
                     RSIASHPASTTHSKLTEEERLAVGITKGLIRISVGLEHIDDIKADILQALDKVAV"
     gene            2280..>2564
                     /locus_tag="VLL95_07210"
     CDS             2280..>2564
                     /locus_tag="VLL95_07210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38688.1"
                     /translation="MKKLIAILLLGLYGFSVSGASVQLHYCCGSIASVSVGYSEAEGC
                     GDMAMQEMAGCCFDDQVKMDVDDDQGASVAASVPEACITMLAPVEQSTFEV"
BASE COUNT          658 a          693 c          660 g          553 t
ORIGIN      
        1 agcgctgcat aggtttccac cagcacttcc cgcaggtact cccattcgcg gctgtcgtac
       61 gaaaccgttt cccacatggt atccttgcca tggcggtctt tcagcggtac ggaataggtg
      121 aatcggcgca gatcgtgata atcgaccagg tggcgcattt cgcggccatg ctgcttgaga
      181 taaccacgca gcggatcctg caccttgaac attggctttt tacgcgacgg cttgatgacc
      241 ggcagaacat gctcttgagg atcggggaaa atcatacagg tccgaatata caacaagccc
      301 ctgcttcgtt ggctgacggc aggcagcacc cattactttt gccattgcaa aacgcatcgt
      361 atgcccatag aagccagccg gtacgccgac caacacagtt ccgacttgtc gccattgctg
      421 caggaaatac tgcaatacac gctggcacat cacccgcatg cccacatgat cagcgggcag
      481 gtgcaaggtc tcatgctcca actgatcagc cgcatgctgc aacccaaaag gattttggag
      541 ataggcactt tcaccggctt cagtgccttg tgcctgaccg aagggatggc aacgggtggc
      601 caattgatta ccctggaaat gcgggaagcc gatgccgaaa cagcacaaca gtattttgac
      661 cgcagtccat ttaaagacca catcaaattg ttgcagggcg atgcacgaac catcatcccc
      721 agcctcaatg aaacctggga cctcgtgttt attgacgccg acaaaaccag ctacatcgac
      781 tactacgaaa tggtattgcc acagatgcga acaggcgggt tcctgttggc ggataatgtg
      841 cttttccatg gcgaagtatt gcaggacgaa gtgaagggca agaatgccaa agccattgcc
      901 gccttcaatg cgcatgtgca ggccgacccc cgtaccgaaa atgtgctgct caccattcgc
      961 gacggattgc tgctcatccg gaagttgtga caggcttcat caatagaaac cacagccaac
     1021 tttgcgaatc ctgtaaattc gccttcccaa taaataacca tctatgcatc cacaaaccaa
     1081 agccatacga atacagaatg aattgaccaa cgaaatggaa cacagctcgc ctttgttcct
     1141 caccagcagt tttcagttcg acagcgccga agacatgcgt gatgcgtttg aagaaaagaa
     1201 cgaccacaac atttacagcc gtttcatcaa tcctacggta cgagaattca tcgacaaggt
     1261 atgtgccctc gaaggcgcgg aagatggctt tgcaactgcc accggcatgt cagccatttt
     1321 tggcaccttc atgaccttcc tgagcagcgg cgatcacatc atcagcagcc cggcggtttt
     1381 tggcagcacg cacaccatac tgtccaaata catgggccgt tggggcatac agtacagcta
     1441 tgccgatttt tccaacccgg catcggtgga agccgccata cagcccaaca ccaaaatgat
     1501 gtacctggaa acgcctacca atcccgggct cgacatatac gacctggagt ggctggggca
     1561 gctttgtaaa aaacacaaca tcatgctggt ggtcgacaat tgttttgcca ccccgcttct
     1621 gcaacgccct attgaatacg gcgctgacct ggtgatacat tctgccacca agtggatgga
     1681 aggacagggt cgtgtattgg gaggcattgt tgtgggcaag aaagaactgg tgcgggaagt
     1741 gtatttgttc tgccgccaaa ccgggccgag cctctctccc ttcaatgcat ggatactgag
     1801 caagagcctc gaaaccctgg atgtgcgcat gcagcgccat tgcgacaatg ccgaagcact
     1861 ggcacaggca ctggaaggac atgagaaaat agcactggtg aaatatccca ccctgaagag
     1921 tcacccggcc tacgccattg cccaaaagca aatgagccgg ggcgggggca ttgttgcctt
     1981 tgaactgaag ggtgggctcg aagcgggcat ccaattcatg aacagcctgg agatgctgac
     2041 actgaccagc aacctaggcg atacccgcag cattgccagc catccggcca gcaccaccca
     2101 cagcaaactc acggaggaag agaggctggc agtgggcatt accaaaggcc tgatacgcat
     2161 cagcgtaggg ctggaacaca tcgatgatat caaggccgac attttgcaag cccttgataa
     2221 agtggcagtt tgatatttta acaggcatct tttgtggatt cgacactaat tttacggcgt
     2281 tgaaaaaact gatcgccata ttgctgttgg gtttgtacgg gttctccgtt tcaggagcct
     2341 ctgtccagtt gcactattgc tgcggctcca ttgcctccgt ttcggtaggc tatagcgaag
     2401 ccgaaggctg tggcgatatg gccatgcaag aaatggccgg ctgctgtttc gatgaccagg
     2461 tgaagatgga tgtggacgat gaccagggcg ccagtgtagc cgcttctgta ccggaagcat
     2521 gtataacaat gctggcaccg gtggagcaat ctactttcga ggtc
//
LOCUS       DATIQF010000438         1674 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_52906, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000438 DATIQF010000000
VERSION     DATIQF010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52906"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..969)
                     /locus_tag="VLL95_07215"
     CDS             complement(<1..969)
                     /locus_tag="VLL95_07215"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: protein motif:HMM:NF001484.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isomerizing glutamine--fructose-6-phosphate
                     transaminase"
                     /protein_id="HSR38689.1"
                     /translation="MCGIVGYVGPRQAYPIIIKGLKRLEYRGYDSSGVALLNHGLKVY
                     KKKGKVADLEESVVGEDLGGQIGIGHTRWATHGEPSDRNAHPHYSASGELAMIHNGII
                     ENYTQIKEELTQKGYTFKSDTDTEVLLNFIEDIRKNNECSLEEALRIALKRIVGAYCI
                     LLIDQADKNTILAARKGSPLVIGIGKNEHFLASDASPIIEYTKEVVYVNDYQIAIVRP
                     DELILKNLGNEKETPFITKLDMELAAIEKGGYEHFMLKEIHEQPQTIYDCLRGRLLPE
                     SGTITMGGVENHIENLLKAQRFVIVACGTSWHAGLVAEYLIEELCRI"
     gene            1104..>1674
                     /locus_tag="VLL95_07220"
     CDS             1104..>1674
                     /locus_tag="VLL95_07220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38690.1"
                     /translation="MLKLALKSWVAKMIATLLNFGTVIVLSRNLGSGERGVCAFYTVV
                     IAMCLVFNELAAGSTTVYLQRSINWKQIRLLASFWSFFASGLLTMTVWLVGKIGWQEW
                     MVLWLVSWLNGVVTIQYNILLGFKKYLVYNVLSILTPSIVLASMVVLALTKHSSPFNY
                     LLVITVGVTISLLAAAASLRECEETEPSLP"
BASE COUNT          383 a          391 c          403 g          497 t
ORIGIN      
        1 aattcggcac aactcctcaa tcaggtattc agctacgagg ccggcatgcc aactggtacc
       61 acaggcaacg atgacgaacc gctgtgcctt gagaaggttc tcaatatgat tctcgacccc
      121 gcccatcgta atggtacctg attcaggcaa caagcgtccg cgaaggcagt cgtaaatggt
      181 ttgtggctgt tcatgaattt ccttcagcat aaaatgctca tagccacctt tttcaatggc
      241 tgccagttcc atgtcgagtt tggtaatgaa aggcgtttct ttttcattgc ccaggttttt
      301 caggatcaac tcatcagggc gcacaatggc tatctggtag tcatttacgt aaaccacctc
      361 tttggtatac tcaataatgg gagaggcatc actggccaga aagtgctcat ttttacctat
      421 gccaatgact aagggagacc cctttctggc tgccaggatg gtattcttat cggcctggtc
      481 aatgagtaat atgcaatagg cacctacgat tcgcttcagc gcaatccgca gggcctcttc
      541 cagggaacac tcgttgtttt ttctgatgtc ctctataaag ttcaaaagca cctcggtatc
      601 ggtatcgctc ttgaaagtgt atcctttttg ggtgagttct tccttgatct gcgtgtagtt
      661 ctcaatgatg ccattgtgga tcatggccaa ttcgccactg gctgagtaat ggggatgggc
      721 attcctgtcg cttggctctc cgtgggtggc ccaacgggta tggccaatac ctatttgacc
      781 tcccaggtct tcgcctacaa ctgattcttc caaatcggca accttgcctt tctttttata
      841 cactttgagg ccatggttca gcaaggccac gcctgaactg tcatatcctc ggtattccaa
      901 ccttttgagg cccttaatga taatcgggta ggcctgtctt ggcccgacat atccaactat
      961 tccgcacata actgggggtg attgtgatgg gtaatttttg gggcgcaata tacccgatgt
     1021 gacgttttcc taaatttttt taattaaccg atgttagcta taggtttcct tcctgtactt
     1081 tggaaaaacg gatattcgct ggcatgctaa aactggcact gaaatcatgg gtggccaaaa
     1141 tgatagccac actcttaaac ttcgggacgg taatagtgct gtcgcgaaac ctgggatccg
     1201 gcgaaagggg agtctgtgcc ttttatacgg tggtcattgc catgtgtttg gttttcaatg
     1261 aactggctgc cggcagcacc accgtgtatt tgcagcggtc aataaattgg aaacagataa
     1321 ggctgctggc ctctttctgg tctttttttg cttcaggact gctcacgatg acggtatggc
     1381 tggtagggaa aatcggctgg caggagtgga tggtgctgtg gctggtaagc tggctgaatg
     1441 gggtggtcac tatccaatac aacattttac ttggattcaa gaagtatctg gtttacaatg
     1501 ttttatcgat tttaacgcca tcgattgttt tggcttcaat ggtggtactt gcccttacca
     1561 aacactcaag tcccttcaat tacttgctcg ttattaccgt gggcgtgacc atttcattgc
     1621 tggcagcagc agccagccta agggaatgtg aagaaactga accttcgttg ccct
//
LOCUS       DATIQF010000439         2783 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_250413,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000439 DATIQF010000000
VERSION     DATIQF010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2783
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250413"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..488)
                     /locus_tag="VLL95_07225"
     CDS             complement(<1..488)
                     /locus_tag="VLL95_07225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38691.1"
                     /translation="MRIAIIVPPFGNQLSDQASQILVNDWIVDLASRHPAIQWAAVGP
                     LAVGNASQTPHLSHLALEGRPAGLAGGWWHRRKLYKLITGWQAQRVICLDPDISGPAG
                     LPLALVLHPDWTPAARSFFSGRRSKQRMKQLAAAQQVAVPLPWQQEWLQKQYGTAPEK
                     ILL"
     gene            667..1359
                     /locus_tag="VLL95_07230"
     CDS             667..1359
                     /locus_tag="VLL95_07230"
                     /inference="COORDINATES: protein motif:HMM:NF025488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4290 domain-containing protein"
                     /protein_id="HSR38692.1"
                     /translation="MDYNTGRGSLQMREYGRHIQKMVDHTMTIEDRASRQRNAEAIVE
                     LMAFFNPQLKTIEDYKHKLWDHLFVMSDFKLDVDSPYPIPTPETYKAKPDPLPYPKHR
                     LKYNHLGKHLETLINKAMAETDPEKKSGFAHTIAHYMKLAYSTWHKELVHDDAIRQEL
                     DAITNGELTFTNTPFVRHRAQPFRDDDTYATGVGKQRNKFKRNRGGGGGGGSNRNGRK
                     NRGNKFGGKKRF"
     gene            complement(1665..1850)
                     /locus_tag="VLL95_07235"
     CDS             complement(1665..1850)
                     /locus_tag="VLL95_07235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38693.1"
                     /translation="MEQGEIIARKIFNVLGWVDVIALCVLSVLVTKNPEWEWALYVNL
                     GFTLVLLACWYFILGND"
     gene            complement(2145..>2783)
                     /locus_tag="VLL95_07240"
     CDS             complement(2145..>2783)
                     /locus_tag="VLL95_07240"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HSR38694.1"
                     /translation="IAGADFGKTKVLEAINSLKPSPQDIVVFYYTGHGFNYNNKPYQY
                     PILALRQASYQPLDEHSLAMEDIYASLKAKGARLTLVMSDCCNSDPSAIAPTMPDVAR
                     TRSTGPVWDINNCRQLFFPEKPTAILLTAASKGELAAGNVSFGGFFSYNFKASMDRFL
                     SQFNAMGRVSWEAIAEEAKKQTIAKANNTDCDIPNVGKKPCVQNPVFKIEKR"
BASE COUNT          731 a          671 c          701 g          680 t
ORIGIN      
        1 agcaatatct tttcaggtgc agtgccatat tgtttttgta gccattcctg ctgccagggc
       61 aggggaaccg ccacctgttg cgcagccgcc aactgcttca tccgctgctt gcttcgcctt
      121 cccgaaaaga aactccgggc cgcgggtgtc caatcgggat ggagcaccag tgccagcggc
      181 aatcctgccg gtcctgaaat atcgggatcg aggcatatga cacgctgcgc ctgccagccg
      241 gtgatgagtt tgtacagttt gcgccggtgc caccagccgc cagccaaacc agcgggacgg
      301 ccttcgagtg ccaggtggct gagatggggt gtttgggaag cgttgccgac agcaagagga
      361 cccaccgctg cccattggat ggcagggtgc cggctggcca ggtcaacgat ccagtcattg
      421 accagtatct gcgatgcctg gtccgaaagc tggtttccaa acgggggaac aatgattgcg
      481 atgcgcatgc agcgcaaagg tagcggccac accggccgta ctttcatttt tagcgtcgtt
      541 attgcaaatg ccatactttt gaaccctggc cagtaaaatt gtttggcctg ttgcttctgt
      601 agcacttcat cgggtcattg tttcccttag caaagtttct acagccatta caacacaatt
      661 ttcagtatgg attacaacac cggaaggggt tccctgcaaa tgagggagta tggtcgccac
      721 attcagaaga tggtggatca taccatgacg atagaagacc gtgcttcacg ccagcgcaat
      781 gccgaagcca ttgttgaact gatggctttc tttaatcccc agctcaaaac gattgaagat
      841 tacaagcaca aattgtggga tcatttgttt gtgatgagcg atttcaaact ggatgtggac
      901 agcccgtatc ctatacctac tcctgaaact tacaaggcca aaccggatcc tttgccttac
      961 cccaagcacc ggctcaaata caatcacctg ggtaagcacc tggaaacatt gatcaacaaa
     1021 gcgatggccg aaaccgaccc ggaaaagaag agcggatttg cacataccat tgcccactac
     1081 atgaaactgg cctacagcac ctggcacaaa gaactggtgc acgatgatgc catccgccag
     1141 gaactggatg ccatcaccaa tggcgaactc acctttacca atacaccgtt tgtacggcac
     1201 cgtgctcagc ctttccgcga cgacgacacc tacgctaccg gcgtgggcaa acagcgcaac
     1261 aagttcaagc ggaaccgcgg tggcggcggc ggaggtggta gtaacaggaa tggtagaaaa
     1321 aaccgcggca acaagtttgg cggaaagaag agattttgac aggcattggt tctgtgtact
     1381 tatttattgc cctggcttgc attgccgggg tatttttttg cccctgaaga aaacaaaaag
     1441 cgagcccaat gaaggactcg ctttttacag gatgagatca atggtgatgg tgtgtgatgt
     1501 tgaatgcaat attataccgg atcacccaca caaaaatttg atagttgtca aaatcgctgt
     1561 cttcaaagca aaatttacaa atgcttaaga gacagatgtt gatatgttaa tatctaccta
     1621 actggtgaac attaggaaag gcaatggccg tcaataggaa agtgtcaatc attgccaagg
     1681 atgaaatacc aacaggcaag cagcaccaag gtgaagccca ggttcacata tagtgcccac
     1741 tcccattccg ggtttttggt taccagtacg gaaagaacac aaagggctat tacatccacc
     1801 catccaagta cattaaaaat ctttctggcg ataatttctc cctgttccat gcaagcgttt
     1861 taatactgtg tgccaagcgg tgtagggagt tttgaaacga aaaatcaaaa acaaatacag
     1921 gagagtcagg ctcatccatt gttggtgggg aagtatttgc atgatcctca actacacaac
     1981 acccgaagct ttatgccagt acctgcaaat actatgccga tgctactgaa gcaaaaaatt
     2041 gcatcatact gaatggcaaa tctagaataa actcgcattc agcattgtga catatgtcaa
     2101 aaaatgatcg agtgttctgg tatcaggctg aggttagatg acggtcagcg tttttcaatt
     2161 ttgaaaactg gattttgaac gcagggcttc ttgcctacat tggggatgtc gcaatcggta
     2221 ttgttggctt tggcaatggt ttgctttttg gcttcttccg ctatggcttc ccaactcacc
     2281 ctgcccatgg cgttgaactg gctcaggaaa cgatccatag atgctttgaa attataagag
     2341 aagaatcctc cgaaggatac attgcctgcg gccagttctc ctttggatgc ggccgtcagc
     2401 aaaatagcgg taggcttttc gggaaagaac aattgcctgc agttgttgat gtcccaaacg
     2461 gggccggtgc tgcgggttct ggctacatcc ggcatggtag gggcaatggc gctgggatcg
     2521 ctgttgcagc aatcgctcat gaccagcgta agccttgcac ctttcgcctt caggctggca
     2581 taaatatctt ccatggccag tgaatgttca tccaggggtt ggtagctggc ctggcgtaac
     2641 gcaagtatcg ggtattggta gggcttatta ttgtaattga aaccgtggcc ggtatagtaa
     2701 aagaccacga tatcctgggg cgagggcttc aacgaattga tcgcttccag cacttttgtc
     2761 tttccaaagt ctgcgcccgc tat
//
LOCUS       DATIQF010000440         1514 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_37514, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000440 DATIQF010000000
VERSION     DATIQF010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37514"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..832
                     /locus_tag="VLL95_07245"
     CDS             <1..832
                     /locus_tag="VLL95_07245"
                     /inference="COORDINATES: protein motif:HMM:NF016103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HSR38695.1"
                     /translation="CVMLLSASAQAQPKPAYQLFTADGKSTDFGVMLQFMQDKEVILF
                     GEYHNNAIAHWLQLELTKAIGDQKTITLGAEMFEADNQQALNNYLAGKISAKGLDSSA
                     RLWKNYNTDYAPLVNYAKAKNYAFIATNIPRKYASLVAKGGFEALDTLSSLEKSWMMP
                     LPVLYDSNLACYKNMHTMMGGHGGPNLPKAQAAKDATMAHFILANLKAGVPFIHYNGS
                     YHSDNFESINWYLKKGKPGIRIGTISTVSQKDLAALEKDNLGKADFIIVVDEDMTNTY
                     "
     gene            860..1213
                     /locus_tag="VLL95_07250"
     CDS             860..1213
                     /locus_tag="VLL95_07250"
                     /inference="COORDINATES: protein motif:HMM:NF014687.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
                     /protein_id="HSR38696.1"
                     /translation="MYLQSMPQTDNKPALNKDLILREKLAIQRTVMTNYTTLLSFIRT
                     ALYFSVAGLSINNLMEISYGLWIEVACWIFAALILIAGFINYFVQKRKIEESKTHIGN
                     YKLEYEKGLVAEEDM"
BASE COUNT          420 a          367 c          352 g          375 t
ORIGIN      
        1 atgtgtgatg ctgctatcgg cttccgcaca ggcccagccc aaaccagcgt accaactgtt
       61 taccgctgat ggcaaatcca ctgattttgg agtgatgctg caattcatgc aggacaaaga
      121 ggtgatcctc tttggcgagt atcacaacaa tgccattgca cactggctgc aactggaact
      181 caccaaagcc atcggcgatc aaaagaccat cacccttggc gctgaaatgt ttgaagccga
      241 caaccagcag gcgctgaaca attacctggc cggaaagatt tcagcgaaag gacttgattc
      301 ctcggcaagg ctttggaaaa actacaatac cgattatgcg cctttggtga attatgccaa
      361 agcaaagaat tacgcattca ttgccaccaa cattccccga aaatatgcca gcctggtagc
      421 caaaggaggc tttgaagcac tcgacacatt gagcagcctg gaaaaaagct ggatgatgcc
      481 gttgccggtt ttgtatgatt ccaatttggc ctgctataaa aacatgcaca ccatgatggg
      541 tggtcatggc ggacccaacc tgccgaaagc acaagccgcg aaagacgcca ccatggcgca
      601 tttcatcctg gccaacctga aagcaggtgt gcctttcatc cactacaatg gctcctacca
      661 cagcgacaat tttgagagca tcaactggta cctgaaaaaa gggaagccgg gcatacgcat
      721 tggcaccatc agtaccgttt cacaaaaaga cctggctgct ttggaaaaag acaatcttgg
      781 caaagccgat ttcattattg tggtggacga agacatgacc aatacttact gagttcaggc
      841 ttccgaaact gcttcttgtt tgtatcttca aagcatgcca caaaccgaca acaaaccggc
      901 tctcaacaaa gacctgatcc tccgggaaaa gctggccatt cagcgcaccg tgatgaccaa
      961 ctataccact ttgttgtctt tcatccgcac agcgctttat ttttctgtcg ccgggctcag
     1021 catcaataac ctgatggaga tttcgtacgg cctgtggatt gaagtggctt gctggatttt
     1081 tgcagcactc attctgatcg ccggtttcat caactatttt gttcagaaaa gaaagattga
     1141 agaaagcaaa acacacattg gcaattacaa actggagtat gaaaaaggtt tggtagccga
     1201 agaagacatg tagtgtgttt gtcgatgttt ttgcagcgcc atacatgcct ttcccacttc
     1261 gatttttgat ttaacagctt tcgtgtgatg caggtcacat ccgtgtgacg ggctgccgtc
     1321 catttttgta ccttacaggg aaagtcctgt gtgcaattga aaaccgaaat gaaaacgatt
     1381 cgcgaaaact ggattttggt attgatcagc ctcatggtgg tggtgcttgg catcagtatg
     1441 ttcagcggag atgaggacga aacgcttgtt ggccaaagtc tcactgttga tacactcgat
     1501 cattgggtag cgcc
//
LOCUS       DATIQF010000441         8921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_220180,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000441 DATIQF010000000
VERSION     DATIQF010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8921
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220180"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..513
                     /gene="paaC"
                     /locus_tag="VLL95_07255"
     CDS             <1..513
                     /gene="paaC"
                     /locus_tag="VLL95_07255"
                     /EC_number="1.14.13.149"
                     /inference="COORDINATES: protein motif:HMM:TIGR02158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaC"
                     /protein_id="HSR38697.1"
                     /translation="LEHEFKNHLLVELPNGDWAQTILKTYFFSAYQKLLMQQLVGCAD
                     EQVRGIAEKSLKEVSYHLRWSREWVLRLGDGTEESHQRILQALGNVWMFTGELFEPPV
                     YHQGWVDYNSIKTAWMEEVRKTFAEATLDVPSVPGFQTGGLKGQHTEYLGYILAEMQY
                     LQRVYPNSEW"
     gene            696..1163
                     /gene="paaD"
                     /locus_tag="VLL95_07260"
     CDS             696..1163
                     /gene="paaD"
                     /locus_tag="VLL95_07260"
                     /inference="COORDINATES: protein motif:HMM:TIGR02159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaD"
                     /protein_id="HSR38698.1"
                     /translation="MVSILESVVDPEIPVLTIADLGILRGVEWAETAQKWIVSITPTY
                     SGCPATDLIATQVRLALFEHGIRNFEIRQVLSPAWTTDWMSDAAKEKLRQFGIAPPVG
                     KSLDEATLDNTVVPCPRCGSTHTKLVSAFSSTACKAFYECLDCLEPFDHFKCH"
     gene            complement(1167..2255)
                     /locus_tag="VLL95_07265"
     CDS             complement(1167..2255)
                     /locus_tag="VLL95_07265"
                     /inference="COORDINATES: protein motif:HMM:NF025749.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4421 family protein"
                     /protein_id="HSR38699.1"
                     /translation="MGKTAKNKYQLYRPTLRGRLLLWLLLPLCGWSQKKSSFFGKKVD
                     SSYIQSYYHELDLGTQFGSQYMEYRTYYNDTFFISIRPNEVYTLSPSINYRWLSVSYA
                     FTPEFLEFNNDDSLRGSTRFRRLSTSFSFGQLSLSGIWSTTRGFYLANMPDVYPNWKP
                     GEPYLQFPEMEVKRFILSGVYRTNPNFSIKAINGGEEEQLRSAWTFLPGLNIMHFKFN
                     VPNGDPQQAGTIELTNNTDINIVLPIAGTWVFSRHAYISAAAGPIMGVDFFRSFAIDE
                     NNKIVESNGIRFSTGFHFGLNIGYNQPNWYIGFSNLSSSYRHGVSNAERMAKLHTQFA
                     LYGGVRIKPPKMLKKSLDWAEKILPFLK"
     gene            2300..3079
                     /locus_tag="VLL95_07270"
     CDS             2300..3079
                     /locus_tag="VLL95_07270"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HSR38700.1"
                     /translation="METTILFELVGNVGKITLNRPDKYNAFNREMALQLQQVLDDCSN
                     NAAVRCVYITGAGKAFCSGQDLGEVTDPNGQGMNRILNEHYNPIVSRIKRLEKPVVAA
                     VNGVAAGAGANIALVCDIVVAAESASFIQAFSAIGLIPDSGGTFMLPRLVGWQKASAL
                     MMLGDKVSAAEAERIGMIYKWFPDADFATASWAIAEKLGMMPTKGLGFTKTALRWSFS
                     HTFNEQLENEDKLQQRAAQTDDFKEGVAAFLEKRKPNFRGE"
     gene            3076..3534
                     /locus_tag="VLL95_07275"
     CDS             3076..3534
                     /locus_tag="VLL95_07275"
                     /inference="COORDINATES: protein motif:HMM:TIGR00369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog fold thioesterase"
                     /protein_id="HSR38701.1"
                     /translation="MTATQHAAFSIVEMMMDKDAFSQWLGIKVIDVAPGVCQLQMTVT
                     ENMCNGFSIAHGGIAFSLADSCCSFSVNAHGRKSLSVETTINQFKAVQVGDTLTCISH
                     EESLGKKLGIYSATITNHEGEKVAIFRGTYYRSEKRWIEPEATTEPDSAS"
     gene            complement(3529..3879)
                     /locus_tag="VLL95_07280"
     CDS             complement(3529..3879)
                     /locus_tag="VLL95_07280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38702.1"
                     /translation="MYEHKKQPLAPRSTFYSRVGRNLLWSILILIISLTIGTIGFHFT
                     APAHYNWFDCFHNASMLLSGMGPVIVDFDNNTGKLFSSFYALYSGIALITNIGLLMAP
                     VVHRFFHKLHLEES"
     gene            3966..4562
                     /locus_tag="VLL95_07285"
     CDS             3966..4562
                     /locus_tag="VLL95_07285"
                     /inference="COORDINATES: protein motif:HMM:NF012360.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferase hexapeptide repeat family protein"
                     /protein_id="HSR38703.1"
                     /translation="MFYSFKGFVPVVHPSSFVHPLAVVTGNVIIGQHCYIGPGAALRG
                     DWGGIVLEDSCNVQENCTIHMFPGVTVLLKEGAHIGHGAIIHGAQIGRNCLVGMNAVV
                     MDNVVLGDESIVGALAFIREGEQIPPRSLVVGNPARIAKQVSDEMIEWKTKGTRLYQA
                     LPAEMMEEAMPCEPLTELPSHRPSQEQLYSTWKTISQS"
     gene            4632..5420
                     /locus_tag="VLL95_07290"
     CDS             4632..5420
                     /locus_tag="VLL95_07290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38704.1"
                     /translation="MRKLTAWFERHVLLARIVIALAHVAFTLMALQLAGWLQEWPVFI
                     PLQFFLVPAAIVTVVALLAHFTKRRLALSVRTSAGYALVRVKYAMVLMASYLLVVGWF
                     YHNIHLQLTPATTLQGSYAPPVAMSKKADENSDQKKVGFFKKQKEKLSLRELRKVLKE
                     AKMLRKEGGDPSTAQAFAIIGIILLASMLAMLVLAAACNLSCSGVGTGAILVGVGGMA
                     LIIWGTIAWITHVNKVTRKKLDAQEKKAKPATSAAVDTNSNSIQ"
     gene            5446..6783
                     /locus_tag="VLL95_07295"
     CDS             5446..6783
                     /locus_tag="VLL95_07295"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HSR38705.1"
                     /translation="MRKILCALLLITGLHASSQVLSLREQARVMDEINAERINKLLPA
                     LMQRTGIDMWVIIRREYNEDPILKTMLPATWLSARRTTMLVFYHDAASGKYEKMAIAR
                     YNVGENIKANWDMKRFPDQWDALMDIVATRNPKKIGLNISKDFGHADGLDHTHHDMFM
                     QKLPAAFKTKVVSAEPLGVAWLETRTPREMQYYSQLVNMTHKIIAEGFSERVITPGIT
                     TTDDVVWWFRQKIHDMGLETWFHTSVAVQRSDSTNFEHLRAFSDRPKEDVIRPGDLLH
                     VDIGISYLRLNTDIQQHAYVLQPGEKEVPASIKAAFAKANRLQDILTSQFKEGRSGNE
                     ILKRALEQAKSEGITASIYTHPLGMHGHAAGPTIGMWDMQQGVPGSGDYPMFFNTAYS
                     IELNAASDIPEWKKSIRIMLEEDGFFDQQGFRYINGRQRQIYLVPRVGWVNGD"
     gene            6809..8149
                     /locus_tag="VLL95_07300"
     CDS             6809..8149
                     /locus_tag="VLL95_07300"
                     /inference="COORDINATES: protein motif:HMM:NF013316.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase U32 family protein"
                     /protein_id="HSR38706.1"
                     /translation="MKTPVFAGVSHFTFAASPVFSRWRFCSERKTTIMRNVEILAPAG
                     AFDSLQAAINAGADAIYFGVEQLNMRTRSSDGFTVDDIAAVAKLCHANGVKAYITLNT
                     VMYDHDMQLLRTILQQVKEHGIDAVIAADFAVMQHCQQMQIPLHISTQANVSNIEAVK
                     FFAPMADVIVLARELTLLQMAAITRDIERFDIRGVSGERLKIEVFVHGALCMAVSGKC
                     YMSLHTKNASANRGACVQTCRRPYKVTDAETGEELMIDNEYIMSPKDLCTIGVLDQVI
                     NAGVDVLKIEGRSKGPEYVYTVTKCYREAVAAIASGSYTREKIAAWEAELEKVYNRGF
                     WEGYYLGHALGEWTHQPGSIATEKKIFIGRGSKYYGKIKVGEFDIETGTLSAGDTILV
                     TGNAHGMYREQLTTLVVNGQEAGQASKGDKLTLRIDTKVTASDKLYKIVTSADA"
     gene            8142..8363
                     /locus_tag="VLL95_07305"
     CDS             8142..8363
                     /locus_tag="VLL95_07305"
                     /inference="COORDINATES: protein motif:HMM:NF024851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HSR38707.1"
                     /translation="MPKLIQYRNNCIGCGICQERQPQYWRMSKKDGKASLLKAQVKKE
                     VHMVAINDSEIQECQSVALACPARVIKVM"
     gene            8444..>8921
                     /locus_tag="VLL95_07310"
     CDS             8444..>8921
                     /locus_tag="VLL95_07310"
                     /inference="COORDINATES: protein motif:HMM:NF013205.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HSR38708.1"
                     /translation="MEKTNFIDYIRVFCKSGHGGAGSRHFARTKFNPKAGPDGGDGGR
                     GGHIILRGNAQLWTLLHLRYYKNVIASDGQGGDKNLKTGADGDDIVIEVPLGTVAYDE
                     ETGEKEGEILEDGQEIIWLKGGRGGLGNKHFATATNQAPEYAQPGEDGVEGWKFLEL"
BASE COUNT         2345 a         2083 c         2438 g         2055 t
ORIGIN      
        1 ttggagcatg aattcaaaaa tcatttgctg gtagagttgc caaacggcga ttgggcgcag
       61 acgatcctga aaacttattt cttcagtgct tatcaaaagc tgctgatgca gcagttggtg
      121 ggctgtgccg atgagcaggt gcgtggcatt gccgaaaaga gcctgaagga agtgagctat
      181 cacctgcgct ggagccgtga gtgggtattg cgcctgggcg atggtacgga ggaaagtcac
      241 cagcgcattt tgcaggcgtt ggggaatgtt tggatgttca ccggtgagtt gtttgagccg
      301 cccgtctacc accagggttg ggtggattat aatagtatca aaactgcgtg gatggaagaa
      361 gtgcgcaaaa catttgctga agctacgttg gatgttccct ccgtccccgg ttttcaaact
      421 ggtggattga agggacagca tactgaatac ctgggatata tactggcaga gatgcagtat
      481 ttgcagcggg tgtatccgaa tagtgaatgg tagggctcaa gtacgaaata cgaggtacga
      541 ggtacgaagt gggaaataca aagacaaagt acgaagtacg aggtacgagg tgtctgcaat
      601 caaataggat cgtttttttc agtagttcgg actgatgaac caaaaacaaa aaaccacaaa
      661 cgaaaaacat caaacaaccg gttacatacg agcaaattgt ttcgatcctc gaatcggtgg
      721 tggatcctga aatacctgtg ctcaccattg ccgacctggg catattgcga ggtgtagagt
      781 gggctgaaac tgcgcagaaa tggattgtca gtatcactcc tacgtatagt ggctgcccgg
      841 ctactgatct cattgcaaca caagtgaggc tggcgctgtt tgagcatggc atccggaatt
      901 ttgaaatccg gcaggtgctt tcgcccgcct ggacaacaga ctggatgagc gatgctgcta
      961 aggaaaagct acgccagttt ggcattgcgc ctccggtggg caagagcctt gacgaagcaa
     1021 ctttggataa tacagtggtg ccttgtcccc gctgcggcag cacacatacc aaactggtga
     1081 gtgccttcag cagcacggcc tgcaaggctt tttacgaatg tctcgattgc ctggagccat
     1141 tcgatcattt caaatgccat tgatggctat ttcaaaaacg ggaggatttt ttctgcccag
     1201 tccaggcttt tcttcagcat tttgggaggc ttgatacgca ctccgccgta cagggcaaac
     1261 tgtgtatgca atttggccat gcgttcggca ttgcttacac catgtcggta agaactactg
     1321 aggttgctga agccaatgta ccagttgggt tgattgtagc cgatattcaa accaaaatgg
     1381 aagccagtgg agaatcgaat gccgttggat tctacaattt tattgttctc atcaatggca
     1441 aaagagcgga aaaaatcgac acccatgatg gggccggcgg cggcagatat ataggcatgc
     1501 ctggaaaaga cccaggtgcc tgcaatggga agtacgatgt tgatatcggt attgttggtg
     1561 agttcaatag taccagcctg ctgcggatcg ccattgggta cattgaactt gaaatgcatg
     1621 atattcagac cggggagaaa ggtccaggct gagcggagtt gctcttcttc gccgccattg
     1681 atggccttga tagaaaagtt gggattggtg cggtacacac cactcagtat aaaccgcttc
     1741 acttccattt ctggaaactg caggtatggt tcgccgggct tccagtttgg atacacatca
     1801 ggcatattgg ctaagtaaaa gccacgggtg gtggaccaga tacccgacag cgacaactga
     1861 ccgaaagaaa acgaagttga caaacgccga aagcgggtac tgccacgcag cgaatcgtcg
     1921 ttgttgaact ccaggaattc tggggtaaaa gcataactca cactcagcca gcggtagttg
     1981 atggatggtg acagggtgta tacttcgttg ggtcggatgc tgatgaagaa agtatcgttg
     2041 taataagtac ggtactccat atactggctg ccaaactgcg tacccaaatc cagttcgtga
     2101 taataggatt gtatataact gctgtccact tttttgccaa agaaggatga ttttttttgc
     2161 gaccagccac ataggggcag cagcaaccaa agcagcagcc tgcccctgag cgttggccgg
     2221 tacagttggt acttattctt cgctgttttg cccattatct ttagcacttg taatacacga
     2281 agtaaaaaca gtaaccgata tggaaacaac gatattattt gaactggtgg gaaatgttgg
     2341 aaagattacc ctgaaccgac cggataagta caatgccttc aaccgggaga tggcgttgca
     2401 actgcagcag gtgttggatg attgttccaa taatgcggcg gttcgttgtg tgtacatcac
     2461 tggtgcaggc aaagcctttt gttccggcca ggacctgggc gaagtaacag atcccaatgg
     2521 gcagggcatg aaccggatcc tgaatgaaca ttacaacccc attgtcagtc gcatcaagcg
     2581 ccttgaaaag ccggtagtgg cagcagtaaa cggtgtggcc gccggcgccg gggccaacat
     2641 cgccttggtt tgcgacatag tggtggctgc cgaaagcgct tcctttatcc aggcattttc
     2701 ggccattggc ctcatacccg atagtggcgg cacctttatg ctgccacggc tggtgggttg
     2761 gcaaaaagcc tctgccctca tgatgctggg cgacaaagta tctgccgctg aagccgaaag
     2821 gatcggcatg atctataaat ggtttcctga tgcagacttt gcaactgctt catgggccat
     2881 tgccgaaaaa ctgggcatga tgcctaccaa aggcctggga ttcacgaaaa ccgcccttcg
     2941 gtggtccttt agtcatacct ttaacgagca attggagaac gaagacaaac tccagcagcg
     3001 ggccgcgcag acagacgatt tcaaagaggg cgtggccgct ttcctggaaa agcgtaaacc
     3061 aaatttcagg ggcgaatgac agcaacccaa cacgccgcat tttcaatcgt agaaatgatg
     3121 atggacaagg acgccttcag ccagtggctg ggcatcaagg taattgatgt ggcgccgggt
     3181 gtatgccagc ttcaaatgac cgtcactgaa aacatgtgca acgggttttc cattgcccac
     3241 ggcggcattg ccttttcatt ggccgacagt tgctgttctt tttcagtaaa tgcccatggg
     3301 cgcaaaagcc tatccgtaga aaccaccatc aaccagttca aggcggtgca ggtaggcgac
     3361 accctcactt gtataagcca cgaagagtcc cttggcaaaa aactgggtat ttattcggcc
     3421 accattacca accacgaagg agagaaagtg gccatatttc gcggcaccta ctatcgcagc
     3481 gaaaaacgct ggatagaacc agaggcaacc accgagcctg actcggcttc atgattcctc
     3541 caaatgcagt ttgtgaaaga agcggtgcac cacgggtgcc atcaataagc caatgttggt
     3601 aatgagcgct atgccgctgt acaatgcata aaatgatgaa aacaacttgc cggtgttgtt
     3661 gtcgaaatca acgataacag ggcccatgcc gctcagcagc atggatgcgt tatgaaagca
     3721 gtcgaaccaa ttgtaatgtg ccggtgcagt aaagtgaaag ccaatggtgc caattgtcag
     3781 actgatgatg agtatcagga tactccacaa cagatttcgg cccacacggg aataaaacgt
     3841 gctgcggggg gccaggggtt gctttttgtg ctcgtacata agtgatcctg atttgaatga
     3901 agaaatgtac aaaaatgaaa ttcaatatcg tcatgcctac gctctgcatg cgttaaattc
     3961 gaatcatgtt ttattcattc aagggttttg ttcctgtggt acatccttct tcatttgtcc
     4021 atccgttggc tgtagttacc ggcaacgtga tcattggcca gcattgctac atagggccgg
     4081 gtgccgccct gcgtggcgac tggggcggca ttgtactgga agacagctgc aatgtgcagg
     4141 agaactgcac cattcatatg tttccgggcg ttactgtttt gctgaaagaa ggagcccata
     4201 ttggccacgg tgccatcatt catggtgcgc agataggacg gaattgcctg gtgggcatga
     4261 acgccgtggt gatggacaat gtggtgctag gcgatgaaag catagtaggc gctttggcat
     4321 tcatcaggga gggcgaacaa atccctccgc gaagcctggt ggtaggcaat cctgcccgca
     4381 ttgcaaaaca agtgagtgat gaaatgatag aatggaaaac aaaaggcacc cgtttgtacc
     4441 aggcattgcc tgctgaaatg atggaagagg cgatgccttg tgaaccgctc accgaattgc
     4501 ccagccatcg tccatcccaa gagcaactgt attcaacctg gaagaccatc tcccaatcat
     4561 gaattcattt cgcggatcgc tattgcttcc tgaatcattt gtttttactt taaaccatca
     4621 attgatgtaa gatgcgaaaa ctcactgcct ggttcgaacg ccacgtttta ttggcaagaa
     4681 tcgttattgc actggctcat gttgctttca ctttgatggc gctgcagttg gccggatggc
     4741 tgcaggaatg gccggtattc ataccgctgc agtttttcct tgtgccggca gctatcgtta
     4801 ctgttgtcgc attgttggca catttcacaa aaaggcgatt ggctctgagt gtgcgaacat
     4861 cggcggggta tgcgctggta cgtgtaaagt atgccatggt tttgatggca tcctacctgt
     4921 tggttgtcgg ttggttttac cacaatatcc atttgcaact gacacctgcc accaccctgc
     4981 agggcagcta tgcaccaccg gtggccatga gcaaaaaggc tgatgagaac agcgatcaaa
     5041 aaaaagttgg tttctttaaa aagcaaaagg aaaaactgtc gctacgcgaa ttgcgcaaag
     5101 tgttgaaaga agcgaaaatg ttgcgcaaag aaggcggtga tccttccaca gcgcaggcat
     5161 ttgcaatcat tggcattatc ctccttgcat ctatgttggc catgttggtt ttggcagctg
     5221 cctgcaacct tagctgcagt ggtgtgggaa ccggcgccat tttggtaggt gtgggaggca
     5281 tggcgttgat catctggggc accattgcat ggataactca tgtcaacaaa gtgacgcgaa
     5341 agaaactgga tgcgcaggaa aagaaagcca aaccagctac ttcggcggct gttgatacaa
     5401 attcaaattc gattcaatag tttgcagggc aaaagcctgc cattaatgag aaaaattctg
     5461 tgcgccttac tgctgatcac tggcctgcat gccagcagcc aggtgttgtc gcttcgcgaa
     5521 caagcccgtg tgatggatga gatcaatgcc gagcggatca acaaactgtt gcctgcgctc
     5581 atgcaacgca ccggcatcga catgtgggtc atcatcagac gcgagtacaa cgaagatccc
     5641 attcttaaaa ccatgctacc tgccacctgg ctcagcgccc ggcgcaccac catgctggta
     5701 ttttaccacg atgccgcttc gggtaagtat gagaagatgg ccattgcccg ttacaacgtg
     5761 ggggagaaca ttaaggccaa ctgggacatg aaacgtttcc ccgaccagtg ggatgcattg
     5821 atggatatag tagcgacacg caatccgaaa aagataggcc tgaacatttc aaaggatttc
     5881 ggccatgccg atggactcga ccatacgcat cacgacatgt tcatgcaaaa attaccggcc
     5941 gccttcaaaa caaaagtggt gagtgccgaa ccattgggcg tagcctggct ggaaacccgc
     6001 acgccccggg agatgcagta ttactcgcaa ttggtcaaca tgacacacaa gatcattgca
     6061 gaaggttttt ctgaaagggt gatcaccccg ggcatcacta ccaccgatga tgtggtgtgg
     6121 tggtttcgcc agaagatcca tgacatggga cttgaaacct ggttccatac atcggtagcg
     6181 gtacagcgca gcgacagcac caacttcgag cacctgaggg ctttcagcga ccggcccaag
     6241 gaagacgtga tccggcccgg cgatttgctg catgtggata ttggcatcag ctacctgcgg
     6301 ttgaataccg acattcagca acatgcctat gtgcttcagc ctggcgaaaa agaggtgccg
     6361 gcttcaataa aagcggcgtt tgccaaggcc aatcgtctgc aggacatact cacttcccaa
     6421 ttcaaagagg gaagatcggg gaacgaaatt ctgaagcggg cactggagca ggccaagagc
     6481 gagggcatca ccgccagtat ttacacccac ccgctgggca tgcacgggca tgccgccggc
     6541 cccaccattg gcatgtggga tatgcagcag ggcgtacccg gcagcggcga ttatcccatg
     6601 tttttcaata ccgcctacag cattgagctg aatgccgcca gcgatattcc tgaatggaaa
     6661 aagagcatcc gaatcatgct ggaagaagat ggattttttg accagcaggg atttcggtac
     6721 atcaacggcc gtcagcggca gatatacctg gtgccaagag tgggctgggt aaacggtgac
     6781 tgatggcctt gcaaccatga ccaaaatcat gaaaacccct gtgtttgcag gggtttcgca
     6841 ttttaccttt gcagcatcgc cagtgttcag tcgctggcgt ttttgttcgg aaaggaaaac
     6901 gaccatcatg cgtaacgtgg aaatactggc tcctgccggg gccttcgata gtttgcaggc
     6961 ggccatcaac gctggtgccg acgccatcta ttttggggtg gagcagttga atatgcgcac
     7021 ccgctcttcg gatgggttta ccgtagatga cattgctgca gttgcaaagc tttgccatgc
     7081 caatggggta aaagcctaca tcactttgaa cacggtgatg tacgatcacg acatgcaatt
     7141 gctgcgcacc atattgcaac aagtgaagga gcatggcatt gacgcggtga ttgcggctga
     7201 tttcgcggtg atgcagcatt gccagcaaat gcaaatccca ttgcacattt ccacgcaggc
     7261 caacgtgagc aacatagaag cggtgaaatt cttcgccccg atggccgatg tcattgtgct
     7321 ggcccgtgaa ctgaccttgc tgcaaatggc cgccattacc cgcgacattg agcgattcga
     7381 tattcggggt gtttcgggcg aacgattgaa aatagaagtg tttgtgcatg gtgcgctttg
     7441 catggctgtt agcggcaaat gctatatgag cctgcacaca aagaacgcat ctgccaacag
     7501 gggcgcttgt gtgcaaacct gtcgccgacc ctacaaagtg accgatgcgg aaaccggtga
     7561 ggaattgatg atcgacaatg aatacatcat gtctcccaaa gacctgtgca ccattggcgt
     7621 gctggaccag gttatcaatg cgggagtgga tgtattgaaa atagaaggcc gcagcaaagg
     7681 gccggaatat gtgtatactg ttacgaaatg ttatcgcgaa gcggtggcag ccatcgcgtc
     7741 tggtagttac acccgtgaaa aaatagcagc ctgggaagcg gagttagaga aggtgtacaa
     7801 ccggggtttc tgggaaggtt attacctcgg tcatgccttg ggcgaatgga cacatcagcc
     7861 cggttccatt gctactgaaa agaaaatatt cataggccgt ggcagcaaat actatggcaa
     7921 gatcaaagtg ggtgagtttg atattgagac cggtaccctc agtgccggcg acaccattct
     7981 tgtaacggga aatgcgcatg gcatgtaccg cgaacaactc actacgctgg tggtgaatgg
     8041 acaagaggcg ggtcaggctt cgaaagggga taagctcacc ctcaggattg ataccaaagt
     8101 gacggcttcc gacaagctgt ataaaattgt aaccagcgca gatgcctaaa ctcattcaat
     8161 atcgcaacaa ttgtattggc tgcggcatct gccaggaacg gcagccgcaa tactggcgca
     8221 tgtcgaagaa agatggcaaa gccagcttgc tgaaggcaca ggtgaaaaag gaagtgcaca
     8281 tggttgccat caacgattcg gaaatacaag aatgccagtc ggtagcgctg gcttgcccgg
     8341 caagggtcat caaggtgatg taagccctgg ttctcccacc gaaatcacaa atcataaatc
     8401 atcaatcccc aaacctgcgg tttccccgac ctttgcggcg gatatggaga aaacgaattt
     8461 cattgattac atacgggtgt tctgcaaaag cgggcacggt ggtgccggca gcaggcattt
     8521 tgcccgcacc aagttcaacc ccaaagccgg ccccgatggt ggcgatggcg gcaggggagg
     8581 acacatcatt ctgaggggca atgcgcaatt gtggacactg ctgcatttgc ggtattacaa
     8641 aaatgtgatt gccagcgacg ggcagggcgg cgataagaac ctgaaaaccg gtgcggatgg
     8701 cgatgacatc gtcattgaag tgccactggg caccgtggcc tatgatgaag aaaccggtga
     8761 aaaagaggga gaaatactgg aagacggcca ggagatcatt tggctgaaag ggggccgcgg
     8821 cggcttgggc aacaagcatt tcgccactgc caccaaccag gcgcctgagt atgctcaacc
     8881 tggtgaagac ggtgtggaag gatggaaatt cctggagttg a
//
LOCUS       DATIQF010000442         2527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_280857,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000442 DATIQF010000000
VERSION     DATIQF010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2527
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280857"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..382
                     /locus_tag="VLL95_07315"
     CDS             <1..382
                     /locus_tag="VLL95_07315"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HSR38709.1"
                     /translation="NKERLVPIGRDAIKYIGIYRNSVRNTLDVKRGEEDIIFLNRIGS
                     RLSRVSVFLIIKALAQKAGIKKNISPHTFRHSFATHLVEGGADLRAVQEMLGHESITT
                     TEIYTHLDREYLRETLHRFHPAFK"
     gene            complement(404..901)
                     /locus_tag="VLL95_07320"
     CDS             complement(404..901)
                     /locus_tag="VLL95_07320"
                     /inference="COORDINATES: protein motif:HMM:NF025793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCMP deaminase family protein"
                     /protein_id="HSR38710.1"
                     /translation="MSKRNDYISWDEYFMGVALLSGRRSKDPATRVGACIVNQQNKIV
                     GAGYNGLPIGCSDDDFPWGKQGDFLETKYPYVCHAELNAILNNIGMDLHGCRIYTALF
                     PCNECSKAIIQAGIKEVIFLSDKYDGTDVSIASKRMLDTAGVSYRKVVAGIDKIELSF
                     DEKDV"
     gene            complement(1102..2277)
                     /locus_tag="VLL95_07325"
     CDS             complement(1102..2277)
                     /locus_tag="VLL95_07325"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR38711.1"
                     /translation="MRTITRTVWILSLVSLFTDMASEMLYPVMPVYLQSIGFSVLIIG
                     ILEGVAEATAGLSKGYFGKWSDTSQRRVPFVQIGYAFSAVSKPMMALFIAPLWVFAAR
                     TLDRLGKGIRTGARDAILSGEATKATKAKVFGFHRSMDTLGAVMGPLFALLWLYYHPE
                     DYRTLFLLAFAPGLLAVVASFLLKEKGTPPSSKGKVSFFSFVHYWHESPRTYRQLVLG
                     LLGFALFNSSDVFLLLKAKSSGMNDSMVIGIYIFYNLVYALFAFPLGMLADKIGLKKI
                     FITGLVLFAIVYFGMSMAGQNLYLVASLFLLYGLYAAATEGVSKAWITNITEAKDAAT
                     AVGSFSAWQSICSLIASSLTGFMWFHFGAAAALAITAIAALAVAGYLLRIPPPERHK"
BASE COUNT          663 a          621 c          631 g          612 t
ORIGIN      
        1 aaacaaagag cgcctggtgc ctattggccg cgatgccatc aaatacattg gtatttaccg
       61 gaactccgta agaaacacgc tggatgtaaa gcgaggtgaa gaggatatta tattcctgaa
      121 tagaatcgga tcgcggctat caagagtttc ggtatttctg atcatcaagg cactggcgca
      181 aaaggcaggc atcaaaaaga acatttcgcc ccacactttc aggcacagct ttgccacgca
      241 tttggtagaa ggcggcgccg acctgcgggc tgtgcaggaa atgctggggc acgaaagcat
      301 taccaccact gaaatttata cgcacctcga cagggaatac ctgcgggaaa ccctgcatcg
      361 gtttcacccg gcattcaagt agcgttgtga agtgcaggaa gcgttatacg tccttttcat
      421 cgaaagacaa ttcgatctta tcgatgccgg ccaccacttt gcggtagctg acgccggccg
      481 tatccagcat gcgtttgctt gctattgaca cgtcagtccc gtcatatttg tcgctgagga
      541 aaatcacttc cttaatgccg gcctgtatga tggctttgct gcattcattg caggggaata
      601 aagcggtata aatgcggcag ccatgcaagt ccatgccgat gttgttgagg atggcattca
      661 gttcggcgtg gcatacgtat ggatatttcg tctcgaggaa atcgccctgc ttgccccagg
      721 ggaaatcgtc gtcgctgcag ccaatcggca ggccattgta gccggctccc acaattttgt
      781 tttgctggtt tacgatgcag gcacccaccc gggtggccgg gtctttgctg cgccggccac
      841 tcagcaacgc tacgcccata aaatattcat cccaggagat gtagtcattt ctcttactca
      901 tatagcagta tgtacatcgc aatatagcag aaccatgcat attgtacgct gccaatgaca
      961 gtctattctt ctcattcttc gccgttggag tgatgttaac gcgaaagcgt tcaataactg
     1021 cagctacatc cctgctccat tcattgaaaa ttggagttgg cttccattca gtcagaaatc
     1081 aactgagtta cgtaagagag attacttatg cctctcggga ggaggaatac ggaggaggta
     1141 tccggcaact gcgagtgctg ctatggctgt aatggccaat gcggcggcag cgccaaaatg
     1201 gaaccacata aatcccgtta gcgaactggc aatcaggctg cagatgcttt gccaggctga
     1261 aaaacttccc actgctgtag cggcgtcctt ggcttcggtg atgttcgtga tccaggcttt
     1321 gcttacgcct tcggtggcag cggcatacaa tccatagagt agaaacaggg aagcgacaag
     1381 gtaaaggttt tgaccagcca ttgacatgcc gaaatacact atcgcaaaca ataccagtcc
     1441 ggtaatgaat attttcttta ggcctatttt gtctgccagc atgcccagcg gaaaggcaaa
     1501 aagcgcataa accaggttgt agaaaatgta aataccaatc accatgctgt cattcatgcc
     1561 tgacgacttt gcctttagca gcaggaatac atcggaactg ttgaaaagcg caaagcccag
     1621 caatcccaac accagttgcc tgtatgtcct ggggctttcg tgccaatagt gcacaaagga
     1681 gaagaaggag accttcccct tcgatgaggg tggcgttcct ttttccttca atagaaaaga
     1741 ggccaccacc gccaacaggc ccggcgcaaa ggcaagcagg aataaggtgc ggtaatcttc
     1801 cgggtgataa tacaaccaaa gcaaagcgaa caacggcccc attactgcac cgagcgtatc
     1861 catgctgcgg tgaaagccaa agaccttggc tttggttgct ttggtggctt caccggaaag
     1921 aatggcatct cgggcgccgg tgcggatgcc tttgcccagc ctgtcgagtg ttctggcagc
     1981 aaacacccac agcggtgcaa tgaacaaggc catcatgggt tttgaaacag cactgaaggc
     2041 atacccaatt tgcacaaaag gtaccctgcg ttgggaggtg tcgctccatt ttccaaaata
     2101 gcctttgctt agtccggcag tggcttcggc tactccttcc aggataccaa tgatcaatac
     2161 tgaaaagcca atggattgaa ggtatacagg cataacaggg tagagcattt cgctggccat
     2221 gtcggtaaac agactgacca gtgaaaggat ccaaaccgtt cgggtaatgg tgcgcactgt
     2281 aaaaagattg tccgcgtaaa gctacttctt cagggttcga tagtaatctt tcaaactgct
     2341 atcctgagaa tttgatcttg tcgcaaggcc aggaacctta ctgcctaatg aagtcagcac
     2401 aattgcttat gcatcctgaa gtttttcatt tgtaccccgg caatggaaac tgtttgttca
     2461 tcctgtacct caaacccttg tctttcaaaa aatggtttgg cagtgatgct ggcatgggtg
     2521 gtaagca
//
LOCUS       DATIQF010000443         1570 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_220231,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000443 DATIQF010000000
VERSION     DATIQF010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220231"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..366)
                     /locus_tag="VLL95_07330"
     CDS             complement(<1..366)
                     /locus_tag="VLL95_07330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38712.1"
                     /translation="MVVTNTIIILSAVIALLIASFAGYLFWAQRKFGELEQMRLKASE
                     TIRMKLGAYERLILFTERNKIDNLINRLYQSYWNAASMRQALIANIREEYDHNVTQQL
                     YVEPEIWDAVTRMKDQNIFI"
     gene            545..865
                     /locus_tag="VLL95_07335"
     CDS             545..865
                     /locus_tag="VLL95_07335"
                     /inference="COORDINATES: protein motif:HMM:TIGR00049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HSR38713.1"
                     /translation="MNFTSSAIAELKRLLTEEPLAAGKTLRVGVKGGGCSGMTYVLDF
                     DTPTEKDKHFTVDGLDCIIDPSHEIYLYGMEINWEGGLNSRGFTFKNPNASTTCGCGT
                     SFAV"
     gene            complement(940..>1570)
                     /locus_tag="VLL95_07340"
     CDS             complement(940..>1570)
                     /locus_tag="VLL95_07340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38714.1"
                     /translation="DSAGQLRTFVQLARSASNLPYFLTNGSTPQGLYAITGTDISKNV
                     FIGPTPNLQMVMMHEVNPPKFTHYFPIVFNAPPEKLYRSYFPESWQQWNGLMEAYMAG
                     KIGRSEIIAHGTTIDPDWFKGQPYYPISPTLGCLCGREIWNPQTGRIDYSDQLELVNT
                     FIETPGTKGYMIVINLDNKEMPVSPAEIERLVKPYETALAKSNASSQGN"
BASE COUNT          377 a          352 c          425 g          416 t
ORIGIN      
        1 gatgaagata ttctggtctt tcatccgggt gactgcgtcc cagatctcgg gctccacgta
       61 caactgctgc gtcacgttgt ggtcgtactc ctcgcggatg ttggcaatga gtgcctgccg
      121 catgctggcg gcattccagt aggattggta caagcggttg atgaggttgt caatcttgtt
      181 tcgctccgta aaaagtatga ggcgttcata ggcacccagt ttcatccgaa tggtttctga
      241 ggctttgaga cgcatttgtt ccaattcgcc aaactttcgt tgggcccaaa aaagatagcc
      301 tgcaaaactg gcgatgagca gggcaatgac tgcacttaag atgatgattg tatttgtaac
      361 taccataggc gctaaaggta aggaggtgcc tgttttcaaa gcatgagcaa ggcagtgtta
      421 aaacaggttt cgaaaaagga aacaatcccc cttgcccggc cgggatgcct gaggcagtgg
      481 ggatattcca atacatttgc acccggagga tattcaaact atgctgatag cagaacaatt
      541 acctgtgaat tttacatcca gcgccattgc tgaactgaag cgtttattga ccgaggagcc
      601 gctggctgca ggcaaaacat tgcgtgtagg cgtaaagggc ggcggctgca gcggtatgac
      661 ctatgtgctc gactttgaca cgcctaccga aaaagacaag cattttacag tggatggttt
      721 ggattgcatt attgatccat cgcatgagat ttacctgtac ggcatggaga tcaactggga
      781 aggcgggctc aacagccggg gattcacctt taaaaatccc aatgcctcta ccacatgtgg
      841 ttgtggtacc agtttcgcag tataagctta caaatacaag ttcaaaatag aaagccatcc
      901 agttgcctgg atggcttttt cgttgctaca aagtggagtt caatttccct ggctggaagc
      961 gttgcttttt gccaaagccg tttcgtaagg ctttaccagc ctttcaattt ctgcagggga
     1021 aacgggcatc tctttgttgt caaggttaat gacgatcata tagcctttgg tgccgggtgt
     1081 ttcaataaag gtgttcacca gttccaactg atcgctgtag tcaatgcgac cagtttgggg
     1141 gttccagatc tcgcggccgc acaagcaacc cagggtgggc gaaatggggt agtagggctg
     1201 ccctttaaac caatcgggat caatggtggt gccatgcgca atgatctcgc tgcggccaat
     1261 tttgcctgcc atgtatgctt ccatcagccc gttccattgt tgccagcttt ccggaaaata
     1321 acttctgtat agtttttccg gtggggcatt aaatacgatc gggaaataat gggtgaattt
     1381 gggcggattc acttcatgca tcatcaccat ctgcaggttg ggcgtggggc ctatgaagac
     1441 gttctttgaa atgtcggtgc cagtgatggc atacaagcct tgtggcgtgc taccattggt
     1501 gaggaagtag ggcagattgc tggcggagcg ggccaactgc acaaatgttc tcaattggcc
     1561 ggcgctgtcc
//
LOCUS       DATIQF010000444         3195 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_235585,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000444 DATIQF010000000
VERSION     DATIQF010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3195
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235585"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..245)
                     /locus_tag="VLL95_07345"
     CDS             complement(<1..245)
                     /locus_tag="VLL95_07345"
                     /inference="COORDINATES: protein motif:HMM:NF012510.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HSR38715.1"
                     /translation="MFKKILIANRGEIALRIIRTCREMGIRTVAVYSTADKDSLHVKF
                     ADEAVCIGKPQSSDSYLNMPRIIAAAEITNADAIHPG"
     gene            complement(388..870)
                     /gene="accB"
                     /locus_tag="VLL95_07350"
     CDS             complement(388..870)
                     /gene="accB"
                     /locus_tag="VLL95_07350"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HSR38716.1"
                     /translation="MDIKTIQDLVKIINKTNIAEISIEEADLKITIKQKEDRVETVVA
                     AHASPVYMPAPAPAAAPAATAPAPAAPAAAPAAAPANTITIKSPMIGTFYRSSAPDKP
                     SFVNVGDEVAPGKVVCIVEAMKLFNEIESEVKGKIVKVLVEDASPVEYDQPLFLVEPA
                     "
     gene            complement(1097..1663)
                     /gene="efp"
                     /locus_tag="VLL95_07355"
     CDS             complement(1097..1663)
                     /gene="efp"
                     /locus_tag="VLL95_07355"
                     /inference="COORDINATES: protein motif:HMM:NF001810.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HSR38717.1"
                     /translation="MANTSDISRGLILKLDGSLYKVVEFGENKTARAAAKVWAKLQGV
                     DNSRTIEKTWNSGDTIYPVRVERRNFQYLYQDDTGYNFMDQETFEQIAVAEALIDAPQ
                     FLKDGQEVSVLINTETEAPMSVELPDKIVVKVTYSEPGVKGDTATRTLKPATVETGAT
                     VNVPLFVNEGEMIRINTKTGEYVERVKE"
     gene            1850..2359
                     /locus_tag="VLL95_07360"
     CDS             1850..2359
                     /locus_tag="VLL95_07360"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HSR38718.1"
                     /translation="MKYLILLVMLGGVNLLAKAQDEKGVTSITYKNYKEVPAFNLLDL
                     NEKKFSSGSVQQKGKSLVVVYFSPMCGHCLEFTENLTSQLKKFKQVQFLFVSAYPMND
                     IKTFAITRGLNKMPQFKIGQDPDFNMGRFYELKEIPAIFVYSKNGRFKKSFDSKVKIE
                     DLIAEANAG"
     gene            2494..>3195
                     /locus_tag="VLL95_07365"
     CDS             2494..>3195
                     /locus_tag="VLL95_07365"
                     /EC_number="1.1.1.37"
                     /inference="COORDINATES: protein motif:HMM:NF004863.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HSR38719.1"
                     /translation="MKVTLVGAGAVGATCADNIARKELAHEVVLLDIKEGLAEGKAQD
                     MMQTAQLLGFDTKITGSTGDYSKTAGSDVVVITSGIPRKPGMTREELIGTNAGIVKGV
                     AENILKHSPNAIIIVISNPMDTMTYLALQSTGLPKNRIIDMGGTLDSSRFRYQLSQHL
                     GCSPSDLNALVIGGHGDTTMIPLIRHATWNSIPVTQFLDADKQQQVVNDTMVGGATLT
                     KLIGTSAWYAPGAAGA"
BASE COUNT          815 a          765 c          756 g          859 t
ORIGIN      
        1 tacccggggt gaatggcatc ggcattggtg atttcagctg ccgcaatgat gcggggcata
       61 ttcaggtagc tgtcagagct ctgcggcttg cctatacaaa cagcttcatc ggcaaacttt
      121 acatgcagcg agtctttatc ggcagtggaa taaactgcca cggtgcggat gcccatttcg
      181 cgacaagtgc ggataatgcg caaggcaatt tcgccgcgat tagcgatgag tattttctta
      241 aacatcagat caaatttgaa aatgagtaga tcttaactga tttcccggct aaccctctta
      301 cagttttcaa ttgtagcaat aaattggaga gggcttaaat gtgaaaatgg cattttttaa
      361 cgatgccatt ttcacactgt aaaattctta tgcaggttct accaggaaaa gaggctggtc
      421 gtattccact gggctggcat cttctaccag tacttttacg attttaccct tcacttcgct
      481 ttcaatttca ttgaagagct tcatcgcttc cacaatgcat accactttgc cgggagctac
      541 ttcatcaccc acgttcacaa aagaaggttt gtcgggggct gagctgcggt agaaggtacc
      601 aatcatgggg ctctttatag tgatggtgtt ggccggtgcg gcggctgggg ctgcagcagg
      661 tgcagcaggt gcgggtgcag tagcagcagg agcagcagct ggcgctggtg caggcatgta
      721 aaccggcgag gcatgtgctg ccactacagt ctctaccctg tcttcctttt gcttgatggt
      781 aatttttaaa tcagcttctt cgatgctgat ctcagcgatg ttggttttgt tgatgatctt
      841 caccaaatcc tgaatggttt taatgtccat actgcaacgg ttgataaatg aaaaaaatcc
      901 cttttaatac ggggcggcta aagtaagggt tgctgttcat ttaatgcata attcaaccat
      961 ttttgcccca ttttggggaa aaaatgagtc atttttcata aaaaatcgcc caatttcgga
     1021 aaaaccaggt tttggcgtaa acaaaaaaat gagccccctg ggaggctcat tttttcaaag
     1081 tatttgagag ttacaattat tccttcaccc tttccacgta ttccccggtt ttggtgttga
     1141 tcctgatcat ttcaccttcg tttacaaaca agggtacgtt aacggtagcc ccggtttcta
     1201 cagtggcggg cttcagggtt cgggtagcgg tatctccttt tacgccaggc tcgctgtagg
     1261 ttactttcac cacgatctta tcgggcagtt ccacgctcat gggagcttcg gtttcagtgt
     1321 tgataagcac acttacttcc tggccatctt tcaaaaactg gggcgcatca atcagggctt
     1381 ctgccacagc aatctgctca aaagtctcct ggtccatgaa attgtaaccg gtatcgtcct
     1441 ggtacaggta ctgaaagttg cggcgttcca ccctaaccgg gtagatggta tcgccactgt
     1501 tccaagtctt ttcaatggta cggctgttgt ccacgccttg cagctttgcc catactttgg
     1561 cggctgcacg ggcagttttg ttttcaccaa attcaaccac cttatacagg ctgccatcga
     1621 gtttcaaaat cagaccacgg ctgatgtctg aggtatttgc cataaatgaa ttttttatcc
     1681 ccgccggctg ccatccgcta accagcttct tgaatgggcc gcaaatatag gcgtatcagc
     1741 aaaatcgaaa atcctgcatt tgcgtgtttc atggcgtcac ggtcattttc acttgtcttt
     1801 tggaggcttt tttggatagc tgatttttca ttccttgtaa attgccgcca tgaagtattt
     1861 gattctcctg gtcatgctgg gtggcgtaaa cctgctggcc aaagcacagg acgaaaaagg
     1921 tgttacctcc attacctaca agaattacaa ggaggttccg gcattcaatc tgctcgactt
     1981 gaatgagaag aagttttcat caggatcggt acagcagaaa ggcaaaagcc tggtagtggt
     2041 ttattttagc cctatgtgcg gtcattgcct tgagtttacc gagaacctta cctcgcagct
     2101 caaaaaattc aagcaggtgc agtttttgtt tgtatctgcc tatcccatga atgatattaa
     2161 aacatttgca atcaccaggg gattgaacaa gatgccacaa ttcaaaatag ggcaggaccc
     2221 ggatttcaac atgggaaggt tttatgagtt gaaagaaatc ccggccattt ttgtgtactc
     2281 aaaaaacggc agattcaaaa agtcattcga ctccaaggtg aagattgaag acctgattgc
     2341 tgaggccaat gcaggctaaa gcagcctcga catgagtttt gtcatctctg cctatccatc
     2401 tctggtattt attcgcaaaa aaaatgacgc ggcatcatgc agcctatacc tttgccgcga
     2461 aatttacatt cactcattta taaatctcga tccatgaaag taactttggt aggagccggt
     2521 gcagtaggag ccacttgtgc cgacaatatt gcccgcaaag aactggccca tgaagtggta
     2581 ttgctcgata ttaaggaagg cctggccgaa ggaaaggccc aggatatgat gcaaaccgcc
     2641 caattgcttg ggtttgacac caagattact ggcagcactg gcgactacag caagaccgcc
     2701 ggcagcgatg tggtggtaat aaccagcggt attccccgca agccaggtat gacccgtgaa
     2761 gaactgattg gcaccaatgc aggtattgta aaaggagtgg ctgagaacat cctcaagcac
     2821 agccccaatg ccatcatcat cgtgatcagc aatccgatgg ataccatgac ctacctcgcc
     2881 ttgcaaagca caggcttgcc caaaaaccgc atcattgata tgggtggcac cctcgacagc
     2941 agccgcttcc gctaccaact cagccagcac ctcggttgca gtcccagcga cctgaatgca
     3001 ctggtgatag gcggacacgg tgacaccacg atgattccgc tgatccgcca tgctacctgg
     3061 aacagcattc cggttacgca attcctggat gcggacaagc aacaacaagt tgtaaatgat
     3121 accatggtag gtggcgccac cctgaccaaa ctgatcggaa ccagcgcctg gtatgcacct
     3181 ggtgccgccg gtgcc
//
LOCUS       DATIQF010000445         3334 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_37609, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000445 DATIQF010000000
VERSION     DATIQF010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3334
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37609"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..980
                     /locus_tag="VLL95_07370"
     CDS             <1..980
                     /locus_tag="VLL95_07370"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR38720.1"
                     /translation="TDAPAPADLRIVTAVNSVNPFNWIKVGNQLRKEKPDLIVVRFWI
                     PFMGPSLGTILRRVRKNKHTRIVCIADNIKPHESRPGDGWFTRYFVKAVDHFVVMSKQ
                     VLEDLRSFTSRPASLVAHPLYDNFGEQVPQPQARQWLQQHYQMALQPTDKVLLFFGLI
                     RQYKGLDLLLQAMQQVTDPSIKLLIAGEYYDEPAKYESLLQHPAVKDRVLPHTTFVAN
                     DDVKYFVGAADCVVQPYRHATQSGVTPVAYHFEIPMIVTNVGGLPEMVPHQKAGLVCE
                     PDPASIAQAINAYFEKGKSFFMQGLLEEKKKLSWESLVQTIIDSAANGK"
     gene            1041..2066
                     /locus_tag="VLL95_07375"
     CDS             1041..2066
                     /locus_tag="VLL95_07375"
                     /inference="COORDINATES: protein motif:HMM:NF020133.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38721.1"
                     /translation="MHYRSKAPLRLGFAGGGTDVDPYAAQFGGAVLNATIDLFAHASI
                     EPIAENAIVLHDLDARQELRFDWDHELPTSHSLALHAAVYNRIHRDFGLPLTGFCLTT
                     SCDAPLGSGLGTSSTLVVAMIGAFTEMLQLPLGEYDIARLAYQAERHDLGFAGGHQDQ
                     YAASFGGINFMEFGPQEKVVVNPLRLKPEVMQELEHNLVLYYTGHSRQSGQIIAEQQS
                     NVRNAVAPSVEAMHQLKRQALRMKEALLKGRLQDLGDLFDMGFQYKKQMVHGISNEKI
                     EQLYAAARQAGALGGKISGAGGGGFIFFYCPGNSRYRVIETLNSFGGQVYPFHFTSEG
                     LTTWTIQ"
     gene            2078..2665
                     /locus_tag="VLL95_07380"
     CDS             2078..2665
                     /locus_tag="VLL95_07380"
                     /inference="COORDINATES: protein motif:HMM:NF024969.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HSR38722.1"
                     /translation="MQSKVQDIFEASIRAKQQLLGNARLTALTAQVSEIIAEAFSHDH
                     RLYFCGNGGSAADAQHLSAEFTGAFYNRGRKALPAEALHVNTSYLTAVANDYDYASVY
                     SRLVEGIMQPGDVLVGLSTSGNSANVVKAFEAARQLGVITVGMTGEGGGQLKALSDFL
                     FNVPSNDTPRIQECHMLIGHTICQLVEGIIFPASK"
     gene            2671..>3334
                     /locus_tag="VLL95_07385"
     CDS             2671..>3334
                     /locus_tag="VLL95_07385"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HSR38723.1"
                     /translation="MLQPSTAIILAGGEGTRLRHILGDTPKSLAAVNGKPFLHYLLQH
                     LWLQGFQHFIIATGVGSTEVNEAAQAWARQHQPCRISISKESEPLGTGGAILQALGQV
                     EEEHVLVVNGDTFFDCHFRNALPLHLDSNSPCTMLLLPMPQPDRYGTVALNTEGKVIA
                     FHEKQPLAEGLINTGAYWINKAAMSAQPFPVAFSWEHEFLAKAAADGLLTAYESGGYF
                     IDI"
BASE COUNT          825 a          915 c          877 g          717 t
ORIGIN      
        1 acaccgatgc accggcaccg gccgaccttc ggatagtcac cgctgtcaat tcagtgaatc
       61 cattcaactg gatcaaagtg ggcaaccaac tgcgaaagga aaaacccgac ctcatcgtgg
      121 tgcgtttctg gatcccgttc atgggcccca gcctcggtac cattttgaga agggtgcgca
      181 aaaacaaaca tacccgcatc gtttgtattg ccgacaacat caagccgcac gaaagccggc
      241 ctggcgatgg atggttcacc cgctattttg taaaagcggt cgatcatttt gtggtaatga
      301 gcaaacaggt attggaagac ctgcggtcat tcacaagcag acccgcctct ttggtggcgc
      361 atcccttgta cgacaatttt ggtgaacaag taccacagcc acaagcccgg caatggctgc
      421 agcaacatta ccaaatggcc ttgcagccga ctgacaaagt cctgctcttc tttggcctga
      481 tccggcaata caaagggctc gacctgttgc tgcaggccat gcagcaagtc actgatcctt
      541 cgataaaact tttgatcgcc ggcgagtact acgatgagcc tgccaaatat gaatcactgt
      601 tgcagcatcc cgcggtaaaa gaccgggtgt tgccgcacac gacattcgtg gccaacgatg
      661 atgtgaaata tttcgtaggc gccgccgact gcgtagtgca gccctaccgc catgccacgc
      721 aaagcggggt tacgccggtg gcctaccatt ttgaaatacc gatgatagtg accaacgtgg
      781 gcggcctgcc cgagatggta ccccaccaaa aagcagggct ggtttgcgaa cccgatccgg
      841 cttccattgc ccaggccatc aatgcctact ttgaaaaagg aaaatcattc tttatgcagg
      901 gcttgctgga ggaaaagaaa aaactgagct gggaaagcct ggtgcaaacc ataattgaca
      961 gcgccgccaa tggaaaataa aatcacggca tcgcttccaa tctgtgaacc cgtgaacttg
     1021 tgaactactg aatttaaaga atgcactacc gttcgaaagc acctttgcgt ttaggctttg
     1081 ccggcggcgg cacggatgta gatccgtatg ctgcgcagtt tggcggcgcg gtactcaatg
     1141 cgaccattga tctttttgcc cacgccagca tagaacccat tgccgaaaac gccattgtgc
     1201 tgcacgacct cgatgcccga caggaactgc gattcgattg ggatcatgaa ttgcccacca
     1261 gccattcact cgctttgcat gccgccgtgt acaaccgcat ccatcgcgat tttgggttgc
     1321 cgctcacagg cttttgtttg acgacctcct gcgatgcgcc cctgggttcg ggcctcggca
     1381 cttccagtac cctggtggtg gccatgattg gcgcatttac cgaaatgctc cagctgcccc
     1441 tgggcgagta tgatattgcg cggctggcct accaggccga acggcacgac ctcggctttg
     1501 ccggcggtca ccaggaccag tatgccgcca gctttggcgg tatcaacttc atggagtttg
     1561 gtccgcagga aaaagtggtg gtgaacccgc tgcggttgaa acccgaagtg atgcaggaac
     1621 tggaacacaa cctcgtgttg tattacaccg gccattcccg ccagagcgga cagatcattg
     1681 ccgagcagca atccaatgtg cgcaacgccg tggccccgag tgtggaggcc atgcaccagc
     1741 tgaaacgaca ggccctccgg atgaaagaag ccttgctgaa aggcaggctg caagaccttg
     1801 gagatttgtt cgatatggga tttcaataca agaaacaaat ggtccatggc atcagcaatg
     1861 aaaagatcga gcaactgtat gccgctgcgc ggcaggccgg tgccctcggc ggcaaaataa
     1921 gcggggctgg tggtggcgga ttcattttct tctactgccc gggcaacagc cgctaccggg
     1981 tgatagaaac attgaatagc tttggcggcc aggtgtaccc ttttcatttc accagcgaag
     2041 gactcacgac ctggaccatt caataaagaa agaacacatg caatccaaag tacaagacat
     2101 attcgaagcc tccattcgtg ccaagcaaca actgctgggc aatgcccggc tgacagcgct
     2161 gaccgcacag gtaagcgaga tcattgccga agcattcagc catgaccatc ggttgtattt
     2221 ctgcggtaat ggcggcagtg ctgctgatgc gcaacacctg tcggccgaat tcaccggcgc
     2281 tttttacaac cgcggacgca aagcattgcc tgctgaagcg ctgcatgtca acacatctta
     2341 tctcaccgca gtcgccaacg attacgatta tgccagcgtg tacagccggc tggtggaagg
     2401 catcatgcaa cccggcgatg tgctggtagg actaagcacc agcggcaaca gcgccaatgt
     2461 ggtgaaggcg tttgaagcag ccaggcaatt aggcgtgatc accgtaggca tgaccggcga
     2521 aggcggcgga caattgaaag cgctgagtga ttttctcttc aacgtaccca gcaacgatac
     2581 gcctcgcata caagaatgcc acatgctgat tggtcatacc atttgccagt tggtggaagg
     2641 catcattttc ccggcttcaa aataaccatc gtgctacaac catccactgc aatcatactg
     2701 gccggcggtg aaggcacccg gctgcgacac attttgggcg atacacccaa aagcctcgca
     2761 gcagtgaatg gaaaaccttt tctgcattac ctgctgcaac acttgtggct gcaaggtttt
     2821 cagcatttca ttatagccac tggcgtgggc agtactgaag tgaatgaagc agcacaggca
     2881 tgggcccgcc aacaccagcc ctgccgcatc agcatttcga aggaaagtga accactgggc
     2941 accgggggtg ccatcctgca ggcactcggg caggttgaag aagaacacgt actggtcgta
     3001 aatggcgata cttttttcga ttgtcatttc cgcaatgcgt tgcctttgca tcttgacagc
     3061 aatagtccct gcaccatgct gctgttgccc atgccgcaac ccgaccgcta tggcacggta
     3121 gcgctgaaca ccgaaggaaa agtcattgcc tttcatgaaa aacaaccgct ggccgaaggc
     3181 ctcatcaata ccggtgctta ttggatcaat aaagcggcga tgagtgcgca accatttccg
     3241 gttgcgtttt catgggaaca tgaattcctg gcaaaggctg ctgcggatgg tttgctaacg
     3301 gcctatgaat cgggtggcta tttcatcgac attg
//
LOCUS       DATIQF010000446         2129 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_53063, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000446 DATIQF010000000
VERSION     DATIQF010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53063"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..600)
                     /gene="hemW"
                     /locus_tag="VLL95_07390"
     CDS             complement(<1..600)
                     /gene="hemW"
                     /locus_tag="VLL95_07390"
                     /inference="COORDINATES: protein motif:HMM:TIGR00539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HSR38724.1"
                     /translation="MAGIYIHIPFCSKACHYCNFHFSTSLHRKSEVINALQAELSALR
                     FPTPLAIDKQIDTIYFGGGTPTLLSQAELESLLAIIHRQFEVAPHAEVTIEANPDDLN
                     AEKIRQLHSSGFNRLSIGVQSFDDRDLVWMNRAHNSGQAITAVKMAQDTGIENISIDL
                     IYGVPTMSEKTWENNLLQAVALKVPHLSCYALTVEERTAL"
     gene            690..>2129
                     /locus_tag="VLL95_07395"
     CDS             690..>2129
                     /locus_tag="VLL95_07395"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HSR38725.1"
                     /translation="MWTGKLGAQRYAVTYHVMPAVPAALRLPDKFNSRVQAEQYLGQL
                     PTLMIAKGYLAASVDSVQYDSTKADVWLFAGEQYKWRSLRFDSTAQAWLRRMPGQAWL
                     QKQGTLPSRPDSLSQSMLGFLANNGHPFAAISWDSVLLEGQFIEGVLQLQPGPPYKID
                     SIVQKGSAKLSSRFLYRYLEMQKGMPYNQKLLDQSERRLDELLFVEKIAPAEVSMLGT
                     GALYNVFLDSRKSNVFNALVGLMPSSTQTPDNKLQIVGDVNLMLRNALGSGETIGVNW
                     QQLQYKSPRINLLYQQPYLFSNKAGIDFQFDLFRKDTQFLNLMTRIGVPYQINTRQNG
                     KVFYQFVANNVAYVDTNAVRQSRQLPDLADFTISQLGIEWELNETDYRYNPRKGWQAL
                     ATGMGGVKNIKKNTDILALKDTGFDFASLYDSLKLTTYQLRLKGSVARYFPLGRQATL
                     KTAAQAGWLQSSNFFRNELFQIGGFKLLRG"
BASE COUNT          536 a          488 c          565 g          540 t
ORIGIN      
        1 caatgccgta cgctcttcaa ccgtgagggc atagcaactg agatgcggca ctttcaatgc
       61 aacagcttgc agtaagttat tctcccaggt cttttccgac atagtgggaa cgccatagat
      121 caagtcgata ctgatgtttt ctattccggt atcctgcgcc attttcacag ctgtgattgc
      181 ctggccggaa ttgtgtgccc ggttcatcca tacaaggtcg cgatcgtcga aagactgcac
      241 gcctatgctg agccggttaa agccggaaga gtgcaattgc ctgatctttt ccgcgttgag
      301 gtcgtcgggg ttggcttcaa tagtcacttc ggcatgcggg gctacctcaa attgacgatg
      361 gatgatggca agcaaacttt ccagctccgc ctggcttagc agggtggggg ttccccctcc
      421 aaagtagatg gtatctattt gcttgtcgat ggctagtgga gtgggaaacc gcagcgcact
      481 aagttctgcc tgcagggcgt ttattacttc acttttgcga tgcagtgagg tggagaaatg
      541 aaaattgcag taatggcatg ctttgctgca aaaaggaata tgaatgtaga tacctgccat
      601 atgcgaaaaa gcaaaggtgc gcattatgcc ggcaacaaat tagttttgat tcgatgcgga
      661 ttggctggat acttttaatg gttgggtgtt tgtggacagg caaattggga gcgcagcgct
      721 acgcggtgac ttatcatgtg atgcctgccg tacctgctgc gttgcgcctg cctgacaaat
      781 tcaacagtcg cgtacaggcc gagcaatacc tgggccagct acctacgctg atgattgcaa
      841 agggctacct ggctgcgtca gtggattcag ttcaatacga ttcaacaaaa gcggatgttt
      901 ggctttttgc cggtgagcaa tataaatggc gttcgctgcg attcgatagc acagcgcagg
      961 catggttgcg tcgaatgccc ggccaggcct ggctgcaaaa acagggtact cttccaagcc
     1021 gtcctgatag cctgtctcaa tccatgctgg gatttctagc caacaatggc caccctttcg
     1081 cagccatatc gtgggacagt gtgctgttgg aagggcagtt tattgaaggc gtcttgcaac
     1141 tgcagccagg tcccccttat aaaatagaca gcattgtgca aaagggaagt gccaagctca
     1201 gcagccggtt tttgtacagg taccttgaaa tgcaaaaggg gatgccctac aaccagaaat
     1261 tgctggatca atcggaaaga cggttggatg aacttttgtt tgttgaaaag atagcacccg
     1321 ccgaagtgtc gatgttaggc actggagcgc tgtacaatgt ttttctcgat tcccgaaaaa
     1381 gcaatgtatt caatgcattg gtgggcctga tgccctccag tacgcaaacg cccgacaaca
     1441 aattgcagat tgtaggggat gtgaacctga tgttgcgcaa tgctttgggc agtggtgaaa
     1501 ccattggggt caactggcag caattgcagt acaagtcgcc acgcatcaac ctcttgtacc
     1561 aacagcctta cctattctcc aataaagccg gtatcgattt tcaattcgac ctttttcgaa
     1621 aagacacgca gttcctgaac ctgatgacga gaattggggt gccgtatcaa ataaataccc
     1681 ggcagaatgg aaaagtcttc taccagtttg ttgccaacaa tgttgcctat gtagacacca
     1741 acgccgtaag gcagtcgagg caattgcccg acctggctga ttttaccatc agccaattgg
     1801 gtatagaatg ggaactgaat gaaacagact atcgctacaa cccacgcaag ggttggcaag
     1861 cccttgcgac aggaatggga ggagtgaaga acattaaaaa aaatacagat atcctggcct
     1921 tgaaagatac cggctttgac tttgcgtctt tgtatgattc cctgaagttg acgacctatc
     1981 aacttcggct gaaaggttcg gtggcgcggt attttccttt gggccgacaa gcgaccctga
     2041 aaactgctgc acaggctggc tggttgcaaa gcagcaattt tttccggaac gagttgtttc
     2101 agattggagg tttcaagttg ctgcggggt
//
LOCUS       DATIQF010000447         3512 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_174540,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000447 DATIQF010000000
VERSION     DATIQF010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3512
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174540"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..914)
                     /locus_tag="VLL95_07400"
     CDS             complement(<1..914)
                     /locus_tag="VLL95_07400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38726.1"
                     /translation="MLVVFLTGMKKRTATLILLVILCTGSANLLAQVTCNTPGQNPTS
                     AFPVCGTSVFIQSSVNLCGGRVIPNPKCNSFPYDDRNPYYYKFTCFETGTLGFTITPN
                     NASSDYDWQVFDITGRNPNDIFTDVSLTVASNWSGNAGETGTSTGASSLHECDGFSTS
                     KYSMLPTITKGRDYLLMISHFTNTQAGYKLEFKGGTAVITDSTLPQMKELKVGCGGTQ
                     FYLKLNKKMKCSSIVADGSDWEFFNANVPIASAVGVDCLNGFDTDSIIITAVNPVPAG
                     TFALRSKKGNDGNTMLDLCDAPLPEGQTL"
     gene            complement(989..1453)
                     /locus_tag="VLL95_07405"
     CDS             complement(989..1453)
                     /locus_tag="VLL95_07405"
                     /inference="COORDINATES: protein motif:HMM:NF020397.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HSR38727.1"
                     /translation="MTSSATTPEQYLAELPEDRREAVSKLHSTILKSLPKGFAAIMNY
                     GMLGYVVPHSLYPAGYHCDPKLPLPFAGLASQKNSINFYHMGIYMDEKLLQWFTAEYP
                     KHSKQKLDMGKSCIRFKKTEDIPYALVSELMKMLSVKDWINLYESVLKKPRK"
     gene            complement(1502..2596)
                     /locus_tag="VLL95_07410"
     CDS             complement(1502..2596)
                     /locus_tag="VLL95_07410"
                     /inference="COORDINATES: protein motif:HMM:NF014090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005384 - manganese ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030026 - intracellular manganese ion
                     homeostasis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HSR38728.1"
                     /translation="MRNKAIQTEVDAAYLYARLADKEEDPVIAKVFRQMSDIEGEHAL
                     SFLRKNGYTSSDMPGPSWRAKTLNRIGSIFGYDYVLGVLMDTEKNLSRSNISLKQQHG
                     QPISGSETNHVKILRSILEKESKVSGAQLAKFEKRHRNVGGNALRAAVLGGNDGLVSN
                     FSLVMGVAGAAGGGSEVLLAGTAGLLAGALSMALGEWISVKSSQELYENQMALELEEL
                     ESNPEGEQKELELIYIAKGVPEEQAQKMAADVMKDTSSAHNVLITEELGINPEELKGS
                     AMEAALYSFFLFAIGAIIPVLPFMFTSGNTAILLSVGMSAVGLFLIGTAITLFTGRSI
                     WFSGFRQVLFGLLAAAITFGIGKLIGVGIS"
     gene            complement(2685..>3512)
                     /locus_tag="VLL95_07415"
     CDS             complement(2685..>3512)
                     /locus_tag="VLL95_07415"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSR38729.1"
                     /translation="IARRTLAARQESTRIITERFAKGYVAEVDKLQAEQQEALAAVTI
                     PAFERQIITIENSMRILMGMGPGRIPRGQTLYQQQISPEIPAGLPSQLLLRRPDIREA
                     ERRLEAEFNRIGVAKASLYPSLNLTGLLGFASPSLTTFLGTSGFVANGFANLVGPIFQ
                     WGQNKRRIRITEYRTEQAFRSYEQTVLTAFGDVDNALAQYRTYSQEYEVRHQLVMAAR
                     KALELTEAKYNYGYSSYYEVLIQQNYLFDAELAESTTLQQKINSLVFLYKSLGGGWQ"
BASE COUNT          790 a          863 c          940 g          919 t
ORIGIN      
        1 agtgtttgtc cttccggcaa gggagcatca caaagatcga gcatggtatt gccatcattg
       61 ccttttttgc tgcgcagggc aaaagtaccc gcaggaacgg gatttaccgc cgttatgata
      121 atggaatccg tatcaaaacc attgaggcag tctacaccaa cggcggaggc gatgggcaca
      181 ttggcattga aaaattccca atcgctgcca tcagctacaa tgctgctgca tttcattttc
      241 ttgttcagct tcaggtagaa ctgggtacca ccgcaaccca ccttcaactc tttcatttga
      301 ggcagggtgg agtcggtgat caccgcggtg ccccctttga actccagttt gtagccggct
      361 tgcgtgttgg taaagtgact gatcatgagc aggtaatcgc ggcccttggt aatggtaggc
      421 agcatgctgt atttggaggt gctgaaacca tcgcattcgt ggaggctgga ggcgccggtg
      481 ctggtgcctg tttcacctgc attaccgctc cagttggaag ccaccgtcag cgatacatcg
      541 gtgaaaatat cgttggggtt gcggccggtg atgtcgaata cctgccagtc gtaatcgctg
      601 ctggcattgt tcggcgtaat ggtaaagccc aaagtgccgg tttcgaagca ggtgaattta
      661 taatagtagg gattgcgatc gtcgtaagga aaactgttgc atttgggatt gggtatgaca
      721 cgcccaccac aaaggttgac cgatgactgg atgaaaaccg aagtgccaca caccgggaag
      781 gccgacgtag ggttttgccc gggcgtattg caggtcactt gtgccaacag gttggcggat
      841 cctgtacaga ggatgacaag cagtatgagc gtggctgtgc gtttcttcat gccggtcaaa
      901 aatacaacca gcacttgttt accaattaat gcctggtgtt gggttatgtt aatatgcaag
      961 ctattggcgc caaccaaccg gatggttgct acttgcgggg cttttttaac actgattcat
     1021 aaaggttgat ccagtctttt acagacaaca ttttcatcag ttcgctcacc aacgcatagg
     1081 gaatatcttc agtcttctta aaacgaatgc agcttttgcc catgtcgagt ttttgcttgc
     1141 tgtgtttggg gtattcggcc gtgaaccatt gaagcaattt ttcgtccatg taaatcccca
     1201 tatgataaaa gttgatggaa tttttttgtg aggccaggcc tgcgaagggc agcggcagtt
     1261 taggatcgca atgatagccg gccgggtaca aactgtgcgg caccacatag ccgagcattc
     1321 cataattcat gatggcagca aatcctttgg ggaggctttt caaaatggtg gaatggagtt
     1381 tgctgacggc ttcgcgtcgg tcttccggca attctgccag gtattgttcg ggagtggtag
     1441 cggagctggt catatctatt ttttagaaaa atagtacaaa gaccacagtt gttgaagccg
     1501 ttcatgaaat acccacccca atcaacttgc caattccaaa cgtaatggcc gctgccaaca
     1561 gtccaaacag cacctgccgg aaaccgctga accaaatgct gcgcccggtg aaaagcgtaa
     1621 tggcggtgcc aatcaggaac aaacccacgg cactcatgcc cacgctgagc aggatggctg
     1681 tattgcccga tgtaaacatg aacggtaaca ccgggataat ggcaccaatg gcaaagagga
     1741 aaaaggaata caacgcggct tccatggccg agccttttag ttcttcgggg ttgatgccca
     1801 gttcttcggt gatgagtacg ttgtgggcgc tgctggtatc tttcattaca tcggcggcca
     1861 ttttttgggc ctgctcttcc ggcacgcctt tggctatgta gatcagttcg agttctttct
     1921 gttcgccttc ggggttggat tccagttctt ccaattccaa tgccatctgg ttttcgtaca
     1981 actcctgcga gctctttaca gaaatccatt cgcccaatgc catgctcagt gcaccggcca
     2041 gtaagcctgc cgtacccgcc agcaatactt cgctgccacc accggcagcg ccggccacac
     2101 ccatcaccag gctgaagttg gataccaggc catcgttgcc gcccagcacc gcggcccgca
     2161 aggcattgcc acctacattg cggtggcgct tttcaaattt tgccagttgt gcgcccgata
     2221 ctttcgattc tttttcgagg atggagcgca gaatttttac gtggttggtt tcactgccgc
     2281 tgatgggctg tccatgttgt tgcttgagcg aaatgttgct gcgggaaaga ttcttttccg
     2341 tgtccatcaa tactcccaac acatagtcgt agccaaatat gctgccaatg cggttgagcg
     2401 ttttggcccg ccatgatgga ccgggcatgt cgctggatgt atacccgttc ttcctgagaa
     2461 acgataaggc atgttcgcct tctatgtcac tcatttgcct gaaaactttg gcaataacgg
     2521 ggtcttcttc cttatcggcc aggcgggcat acaaataggc cgcatctact tcggtttgta
     2581 tggctttgtt gcgcataaaa aatgcaggcg gtctttcgac gtccgcctgc accaaattat
     2641 tgattgatgg ggagcaaaaa gatgatggcg gttagccatc cgcattattg ccagccccct
     2701 cccagtgatt tatacaagaa caccagcgaa ttgattttct gttgcagcgt agtgctttct
     2761 gccagctctg catcaaacag gtagttctgc tgtatcaata cttcgtagta agatgagtag
     2821 ccgtagttgt atttggcctc tgtgagttcc agggccttcc gggctgccat taccagttgg
     2881 tgccgcactt catattcctg tgaataggtg cggtattgcg ccaatgcatt gtctacatca
     2941 ccaaaggcag tgagcacggt ctgttcataa ctgcggaagg cttgttcagt cctgtactcg
     3001 gtgatacgga tcctgcgctt gttctgaccc cattggaata tggggcccac caggttggca
     3061 aatccattgg ctacaaagcc actggtgccc aaaaaggtgg taagcgaagg actggcaaat
     3121 cccaaaaggc cggtgaggtt caacgaagga tacaggctgg ctttggctac gccaatgcga
     3181 ttgaattctg cttccagtct tctttcggct tcgcgaatgt cgggtctgcg aagtagcaac
     3241 tgcgaaggca ggcctgcggg aatctccgga gagatttgtt gctggtacag ggtttgaccg
     3301 cgggggatgc ggcccgggcc catgcccatc aaaatgcgca tcgagttttc gatggtgatg
     3361 atctgccgtt cgaaagccgg gatggtaacg gcggccagcg cttcctgttg ttcggcctgt
     3421 agtttgtcta cttcggccac ataacctttg gcaaagcgtt cggttatgat gcgggtgctt
     3481 tcctgccggg cagcaagggt gcgacgggca at
//
LOCUS       DATIQF010000448         2721 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_83407, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000448 DATIQF010000000
VERSION     DATIQF010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2721
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83407"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            263..460
                     /locus_tag="VLL95_07420"
     CDS             263..460
                     /locus_tag="VLL95_07420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38730.1"
                     /translation="MKFPFFAITVLLTIFCFMMMIKSFDYGQGWAIALSVVGVLTFAV
                     LSIISLLYQMRQHETMGGNEH"
     gene            571..1983
                     /locus_tag="VLL95_07425"
     CDS             571..1983
                     /locus_tag="VLL95_07425"
                     /inference="COORDINATES: protein motif:HMM:TIGR00273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LutB/LldF family L-lactate oxidation iron-sulfur
                     protein"
                     /protein_id="HSR38731.1"
                     /translation="MATNKTKPVQDASTGGAGAFIARSTIKAGDLDHRRKINFNIGKY
                     NAAVLKGKQQFAHLELARQQAKNRKWQAIEHLNESLLIFEKQFTSRGGKVIWAQDAQQ
                     ALDAILSICRDAQCKTLVKSKSMVTEEIHLNDFLEANGIASIETDLGEYIQQLDGEPP
                     YHIVTPAMHKSKEDVARLFANKLGCEPNLSPEQLTQVARYKLREKYVQAEVGVTGANF
                     LLADTGSIALTENEGNARLSCAFPKVHIAIVGIEKVIPSIKDLSLFWPLLSTYGTGQN
                     VTVYNSIISGPRQVNESDGPEQMYVILLDNGRTNLLADARSREALYCIRCGSCLNACP
                     VYKNIGGHSYLTTYSGPIGKVITPWLKGMHDYKHLSYASSLCGNCTAVCPVRINLHEL
                     LLHNRQEAVKQGESTLAERISWKAWKTASLNRSLMNLAAGSIKNKVVNNIFTAWKKHH
                     ADLDFAPKTFNQMWKEQAGK"
     gene            complement(1996..>2721)
                     /locus_tag="VLL95_07430"
     CDS             complement(1996..>2721)
                     /locus_tag="VLL95_07430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38732.1"
                     /translation="KLFFPKGKAARKLNNWYLGPDYDIIYGKAEGRILDWDAGLFFGF
                     NFQNGAQIRGALARFDYTYLFDPFDPTNTGGQELPANTSYLYFSNRLSFASNPRRSFY
                     YSISTRFGQYFNGNIIQIQTTSNLRIQPYATLSLDVNYTNIKLPKPYNSADLWLIGPR
                     FDVSFSRKVFLTSYFQYNNQINNVNINTRFQYRFRPVSDIFLVYTDNYFATEGFNDNG
                     IPVNAWQPKNRAIVLKFNYWLNL"
BASE COUNT          718 a          707 c          660 g          636 t
ORIGIN      
        1 atttgacaaa tgtcaaaatc atgtcataac gctacaaaag tgtcattacc ctataatatt
       61 atacctatca cgcttacaaa tttatgccag ccactcttcc ttgctgccac aatcataatc
      121 agcgtgcctt gaatgatgat actatagctt tgtttgactt ttgcttttac cgcaattccg
      181 aaaaatttgc cactctctcc tgaggctgaa ttgttacatc aaacctttct accccctatt
      241 tttgcagcaa atctttccgg atatgaagtt tccttttttc gccatcactg tgcttctcac
      301 cattttctgc ttcatgatga tgatcaagag ctttgattat ggacagggct gggctattgc
      361 cctcagcgta gtgggtgtgc tcacctttgc ggtgctcagc attatttcgc tgctgtacca
      421 gatgcgccag cacgaaacca tgggcgggaa tgagcattga ccctcctaaa tccctgtctg
      481 ccggcaggca ggctccctaa agggaggact tcaaggccga tccatttttt aacatcaaaa
      541 tcggcgcttg accattgcat tcaattgcgc atggctacca acaaaaccaa acctgtccaa
      601 gatgcctcca ccgggggtgc cggagcattc atagcccgca gcaccatcaa agccggcgat
      661 ctggaccatc gccgcaaaat caatttcaat attggcaaat acaatgcggc tgtgctgaaa
      721 ggcaagcagc agtttgcgca tttggaactg gcccgccagc aggccaaaaa ccgcaaatgg
      781 caggccattg agcacctcaa cgaaagcctg ctcattttcg aaaagcagtt taccagccgc
      841 ggtggcaagg tcatctgggc gcaggatgca cagcaggctt tggatgccat cctgtccatt
      901 tgccgcgatg cccaatgcaa aacgctggtg aaaagcaaga gcatggtgac cgaggaaatc
      961 cacctcaacg acttcctgga agccaacggc attgcaagca ttgaaaccga cctgggcgaa
     1021 tacatccagc aactggatgg cgagccgcct taccacattg tgacccctgc catgcacaaa
     1081 agcaaggagg atgtggccag gctgtttgcc aacaaactgg gttgcgagcc caacctgagc
     1141 cccgaacaac ttacccaggt ggcccgctac aaactccgcg agaaatacgt gcaggccgaa
     1201 gtaggtgtaa ccggcgccaa tttcctgttg gccgataccg gctccattgc cctcaccgaa
     1261 aacgaaggca atgcccggct gagttgcgct tttcccaaag tgcatattgc catcgtaggc
     1321 attgaaaaag tcattccttc cattaaagat ctttcgctgt tttggccact gctgtccacc
     1381 tatggaacgg ggcaaaacgt aacggtttat aatagcatca tcagcggccc ccggcaagtc
     1441 aatgaaagcg atggccccga gcagatgtac gtcatcctgc tcgacaacgg ccgcaccaat
     1501 ttgctggccg atgcccgcag ccgcgaagcg ctgtattgca tccgctgcgg cagttgcctc
     1561 aatgcctgcc cggtatacaa aaacattggt ggccacagct acctcaccac ttacagtggc
     1621 cctattggca aggtgatcac gccctggctg aagggcatgc acgactacaa acacctgagc
     1681 tatgccagca gcctgtgtgg caattgcacg gccgtatgcc ctgtgcgcat caacctgcat
     1741 gagttgctgc tgcacaaccg gcaggaagcg gtgaagcagg gcgaaagcac actggccgaa
     1801 cgcatcagct ggaaggcctg gaaaacagcc agcctgaacc gcagcctaat gaacctggct
     1861 gccggcagca tcaagaacaa agtggtgaac aacattttca cggcctggaa aaaacaccat
     1921 gccgacctgg actttgcacc caagaccttc aaccaaatgt ggaaggaaca agcaggcaaa
     1981 taatagccgg tctttttaca gattcaacca gtaattgaac ttgagtacga tggccctgtt
     2041 tttgggttgc catgcattta caggaatgcc gttgtcattg aaaccctctg ttgcaaaata
     2101 gttatcggta tacaccagga agatatcgct taccggtcgg aagcggtact ggaaacgggt
     2161 gttgatgttt acgttgttga tctggttgtt gtactggaag tacgaggtga gaaaaacctt
     2221 tctgctgaat gaaacatcga acctcggtcc aatcaaccac aaatcagcgc tgttataggg
     2281 tttgggcagc ttgatgttgg tatagttcac atcaagtgac agggtagcgt agggttgaat
     2341 gcgtaggttg gaagtggttt gtatttgaat aatgtttcca ttgaaatact ggccaaaacg
     2401 ggtggaaatg ctgtagtaaa acgaacgacg cgggttgctg gcaaaactca ggcggttgct
     2461 gaaatacaag tacgatgtat tggctggcag ttcctgtccg cctgtattgg tgggatcaaa
     2521 aggatcaaag agataggtat agtcaaacct tgccagtgcc ccacgtattt gggcgccatt
     2581 ctgaaaattg aaaccgaaga acaagccggc atcccaatcc aatatcctgc cttcggcttt
     2641 gccataaatg atatcgtagt cagggccgag gtaccaattg ttcagtttcc gggcggcctt
     2701 tcctttcggg aaaaacaact t
//
LOCUS       DATIQF010000449         3087 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_144415,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000449 DATIQF010000000
VERSION     DATIQF010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3087
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144415"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..563)
                     /locus_tag="VLL95_07435"
     CDS             complement(<1..563)
                     /locus_tag="VLL95_07435"
                     /inference="COORDINATES: protein motif:HMM:NF040138.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HSR38733.1"
                     /translation="MTHTSHHTPHARATAVAFALPLIISAATWLSGCRPEPIKPTAPT
                     ATLDPASLSGRAVIDPKTITTSQATRQLFLNGGPSTNPLTTPLQYQWSMLKGENALVF
                     DTPNSFQTYFRGFVKPGTYQVLLTVTNQAGKSASDTATITVLPNKPPVAKAGNDIFLD
                     YPDTETFLTGGDSNDEYDEIVKSEWRQ"
     gene            complement(914..2242)
                     /gene="ahcY"
                     /locus_tag="VLL95_07440"
                     /pseudo
     CDS             complement(914..2242)
                     /gene="ahcY"
                     /locus_tag="VLL95_07440"
                     /inference="COORDINATES: protein motif:HMM:NF012875.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
     gene            2359..2853
                     /locus_tag="VLL95_07445"
     CDS             2359..2853
                     /locus_tag="VLL95_07445"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HSR38734.1"
                     /translation="MPNSSKTEFSSSSISLDEKDLAILRLLEQNARITVKEISEKIHL
                     STTPVHDRIKRLEESGVIKQYVTLLDPEKVKKSLKVICYVSLKQHSKEAGAKFIKRIL
                     EMPEVIECYNISGEFDFMLKIVAENMNSYYDFHVNKLGEIENMGNIQSVFVMGTIKET
                     HRLV"
     gene            complement(2857..>3087)
                     /locus_tag="VLL95_07450"
     CDS             complement(2857..>3087)
                     /locus_tag="VLL95_07450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38735.1"
                     /translation="VRTYERGVEDETLSCGTGVTAAALVNAHNDRGFNHVDIKTLGGK
                     LYVEFNRVDDDSFQDIWLAGPATKVFDGFIEL"
BASE COUNT          784 a          732 c          789 g          782 t
ORIGIN      
        1 atctggcgcc attccgattt gactatttca tcgtattcat cattggagtc acctccagta
       61 agaaatgttt cagtgtcggg gtagtcgagg aaaatgtcgt tacctgcttt tgccaccggt
      121 ggtttgttgg gaagtacagt aatggtagcg gtatcggagg cgcttttgcc agcctggttg
      181 gtaaccgtaa gtaatacctg gtaggtgccc ggcttaacaa agcccctgaa ataggtttga
      241 aaactattgg gcgtatcaaa caccaacgcg ttttctccct tcagcatcga ccattggtat
      301 tgaaggggtg tggttaatgg gttggtcgac gggcctccgt ttaaaaacag ttgtcttgtt
      361 gcctggctgg tcgtaatcgt cttgggatca atgaccgccc taccagagag actggcagga
      421 tccaatgtgg ccgtaggggc cgttggttta attggctcgg gcctacagcc agagagccag
      481 gtggcagccg aaatgattaa cggcaatgca aaagccaccg cagtggctct tgcatgaggg
      541 gtgtggtggg atgtatgagt cataatgcca ggtttgattg gttcaatttc ccggagtgac
      601 aggaactggt ttgattcatg ttagaacaaa cctatttctt gttccatcgc ctttttttga
      661 aatgcgatga aatacaggta gagccagaca tatacctgac aaagcagaac tcagcgcctt
      721 tcaattgatc tacatgcgac aaaggttttt agtcgcagga aacattgact ttaaaaatga
      781 taggcaagac gaattgccaa ccgatgggat tgagaatgca tttatcggcg acagtgcaca
      841 aaaaagcccg ctccaaaaac ttgaagcggt cttttttaaa tatcagacat cctacctcgg
      901 atattgccag atcttagtag cggtagtgct cagccttgaa cggacccacc ttgctgatgc
      961 cgaggtattc ggcctgggcg tcggtcagtt catccagttg ggcaccaact ttggccaggt
     1021 gcaggcgggc tactttttca tcgaggtgct taggcagtac gtacaccttg ttttcgtagt
     1081 tggcgtggtt gttccacagc tcaatctgcg caagggtctg gttgctgaat gagttactca
     1141 ttacgaagct ggggtgaccg gtagcgcaac ccaggtttac caggcggcct tcagccagca
     1201 ggatgatgtc tttaccatct acattgtaga ggtcaacctg gggcttgatg gtgtctttgg
     1261 tatgaccata gttctggttc agccaggcta cgtcgatctc gatatcgaag tggccaatat
     1321 ttcacacgat ggtcttgtcc ttcatcagtt tgaagtgttc gccggtgatg aggtcgcggc
     1381 agccagaagc agtcactacg atgtcagcct ctttcacggc atccttcata cgctttactt
     1441 caaagccatc catagcggcc tgcagggcac agatggggtc gatttcagta acgataacac
     1501 gggcgccggc accacgcagc gaaagggcag aacccttacc tacgtcgccg taaccaccaa
     1561 caaccgcaac cttaccagcc atcatcacat cggtagcacg gcggatagca tccaccaggc
     1621 tttcctggca gccatatttg ttgtcgaact tgctcttggt tacgctgtcg tttacgttga
     1681 tagcaggaat gggcaaggtg ccttttgcca tacgctcata aaggcggtgt acgccagtgg
     1741 tggtttcttc gctcaggccc ttgatgtgct gtaccagctc ggggtatttg tcgaatacca
     1801 tgttggtgag gtcaccaccg tcatcgagga tcatgttcag cggacgatcg gcgccgccga
     1861 aaaacagggt ctgctcaatg caccagtcgg cttcttccag tgtttgtcct ttccacgcaa
     1921 aaacaccaac gcctgcagcg gcaatggcag cagcggcctg gtcctgggta gagaaaatat
     1981 tgcaggagct ccacttcact tcggcaccca gggctaccag ggtttcaatg agtacggcag
     2041 tttggatggt catgtgcagg caaccggcaa tgcgggcacc tttcagcggc tggctgggac
     2101 catactcttc gcgaatggcc atcagaccgg gcatttcagc ctcggccagg cgaatttctt
     2161 tgcggcccca ttcggccaaa ctgatgtctt ttaccttgta aggcagggta aaatcaattg
     2221 tagaagtaag tgatgctgac ataaaatttg aattaggtgg caaagctaat cattcaggat
     2281 aatttccctt gttaaacaaa ataaacagga caggagaggc gatacgggtt aaattgcagg
     2341 ataaacgacc tgtttgatat gccaaattcc tccaaaacag aattttcttc cagcagcatt
     2401 tccctcgatg aaaaagacct cgccattttg cgcctgctgg agcaaaatgc caggatcacg
     2461 gtcaaggaaa tttctgaaaa gatccacctg agtaccaccc cggtacatga ccgtataaaa
     2521 cgactggagg agagtggggt gatcaaacaa tatgtgacct tacttgatcc ggagaaggta
     2581 aaaaagagcc tcaaggtgat ttgctatgtt tccctgaaac agcacagcaa agaagccggg
     2641 gccaaattca tcaagcgcat cctggaaatg cccgaagtaa ttgagtgtta caatatttca
     2701 ggtgagtttg acttcatgct gaaaatcgtg gctgagaaca tgaacagcta ttacgatttc
     2761 catgtcaaca aactgggtga aatagaaaac atgggaaata tccaaagtgt atttgtgatg
     2821 ggtacgatta aggaaacaca tcgattggta tgatccttac agctctatga acccatcaaa
     2881 cactttggtg gcaggacccg ccagccagat atcctggaaa gagtcgtcat ccacccggtt
     2941 gaattcaaca tacagtttac cacccagcgt cttgatgtcc acatggttga agcccctgtc
     3001 gttgtgagca tttaccaaag ctgcggcagt aacaccggtt ccacaactca aggtttcatc
     3061 ttccacgcct ctttcgtagg tgcgaac
//
LOCUS       DATIQF010000450         1841 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_266060,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000450 DATIQF010000000
VERSION     DATIQF010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1841
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266060"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..322
                     /locus_tag="VLL95_07455"
     CDS             <1..322
                     /locus_tag="VLL95_07455"
                     /inference="COORDINATES: protein motif:HMM:NF014908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38736.1"
                     /translation="KIFNETCQVDFSKTTAEVHNQIRGLSPFPGAFTHLGGKMLKIYR
                     SKKETATHALQPGSFETDGKSYLRFAAADGFVYALEVQMEGKKRMQVEDFLRGFRIEN
                     VSGA"
     gene            complement(429..1334)
                     /locus_tag="VLL95_07460"
     CDS             complement(429..1334)
                     /locus_tag="VLL95_07460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38737.1"
                     /translation="MIRLLSLLLAIGITSTSFAQQATVKLVKGMAAITYKLGEKESSY
                     DVYKRFGMDEATFLLLNQPAEGDTSSLATLPEDMIWVTVANNLLMQCSTGCVTLWYEA
                     AADDNFKKIGSYFGNLNPYYIKQLNPQIEAVSVGKLVQVGYLPSHMLAPGALDVSSIP
                     AAKPSTDSAAVGNAGPPVVPSRPGEPEKKDTATAKVPYSGAGYFSSEFKNGTNRLQGK
                     MGNFKSFGGWYDGKFYILINGVEMGKVVKVTNASNGLVIFAKVVSPLPEIKGEKSTLM
                     ARINNAACAALDIWDDNEFEVEIVY"
     gene            complement(1413..>1841)
                     /locus_tag="VLL95_07465"
     CDS             complement(1413..>1841)
                     /locus_tag="VLL95_07465"
                     /inference="COORDINATES: protein motif:HMM:NF028436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmF rRNA methyltransferase first C-terminal
                     domain-containing protein"
                     /protein_id="HSR38738.1"
                     /translation="NRRQEIPGHHELGDWITDPRQYQFHRHEDTLYAMPAKVHELFHQ
                     VNDQLRIRKAGVCLGEWQRNGLQPDHALAMSALVNEGITQQELSLEQAQQYLRKASFE
                     WPGHEKGWQLAAYKGVALGWVKHLGNRFNNYFPSAWRLRS"
BASE COUNT          435 a          487 c          441 g          478 t
ORIGIN      
        1 gaaaatattc aacgaaacct gccaggttga tttttcaaaa accacggcgg aggtgcacaa
       61 tcaaatccgc ggattgtcgc cgtttcccgg cgcctttaca cacctgggtg gtaaaatgct
      121 gaagatctac cgcagtaaaa aggagaccgc cacgcatgca ctgcaacccg gcagttttga
      181 aacagatggc aaaagctacc tgcgcttcgc tgcggctgac ggatttgtat atgccctgga
      241 agtacaaatg gaaggcaaga aaaggatgca ggtggaagat tttttgcgag gcttccgaat
      301 tgaaaatgtt agtggagcat agctttaaat gcccctgaac aaacgagccc tcttcattca
      361 cttattcacc cattcactta ttcacttatt gactcattca cccattcact cattcactca
      421 ttgccttatc aatacactat ctccacctca aattcgttgt catcccaaat gtccaatgca
      481 gcacaggctg cgttgttgat gcgggccatc aaggttgatt tttctccttt gatctccggc
      541 aggggcgata ccactttggc gaatatgacc aggccattgc tggcattggt cacctttaca
      601 accttgccca tttcaacgcc gttgatgagg atgtagaact tgccatcgta ccagccgcca
      661 aagcttttga agttgcccat tttgccctgc agcctgttgg tgccgttctt gaattcactg
      721 gaaaaataac cggctccgct gtaaggcact ttggcggtgg cggtatcttt tttttccggc
      781 tcgccaggtc ttgatggaac caccggtggg ccggcattgc caacggccgc actgtctgtg
      841 gaaggcttag ctgcagggat gctgctgaca tccagcgccc ccggggccag catatggctg
      901 ggtaagtaac ccacctgcac cagtttgcct accgataccg cttcgatttg cggattcaac
      961 tgcttgatgt agtaaggatt gagattgccg aaatagctgc cgatcttttt gaagttgtca
     1021 tccgccgcgg cttcatacca caacgtaacg cagccggtgg aacattgcat cagcaaattg
     1081 ttggccacgg tcacccagat catgtcctcg ggcaatgttg ccaggctgga ggtatcccct
     1141 tctgccggtt gattcagcag gagaaaggtg gcttcatcca ttccaaaccg cttgtacaca
     1201 tcgtatgaac tctccttctc acccagtttg tatgtgatgg ccgccattcc tttcaccaac
     1261 ttcacggttg cctgttgggc aaacgaggta gaagtaatgc cgatggccag caatagtgat
     1321 aacaatcgaa tcatgatgga ctttactacg gggttacccg tcaaaaatga tgaaattaaa
     1381 ccggaagagt tgttaaagaa aaacaggctc cgttagctgc gcaaacgcca ggcagaagga
     1441 aagtaattgt tgaagcgatt gcccaggtgt ttcacccatc ccaatgccac gcctttgtat
     1501 gctgctaatt gccagccttt ttcatggccc ggccattcaa agctggcttt gcgcaggtat
     1561 tgctgtgcct gttccaatga aagctcttgt tgggtaatgc cctcattcac caatgcactc
     1621 attgccaatg catgatccgg ctgcaggccg ttgcgttgcc attcgcccaa acacacgcct
     1681 gctttgcgta tgcgcaactg gtcatttacc tggtgaaaca attcgtgcac tttcgcaggc
     1741 atggcataca gggtgtcttc atgacgatga aactggtatt gccgcgggtc ggtgatccaa
     1801 tcacccaact catggtgccc cggtatttcc tgccggcggt t
//
LOCUS       DATIQF010000451         2267 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_22788, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000451 DATIQF010000000
VERSION     DATIQF010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22788"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1193
                     /locus_tag="VLL95_07470"
     CDS             <1..1193
                     /locus_tag="VLL95_07470"
                     /inference="COORDINATES: protein motif:HMM:NF012700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38739.1"
                     /translation="SHPFEELKPILETQAVLKLMQRHLQQWPGTITNGTVMVLEKFYQ
                     SQIDRIPPQANAVAAITYKMLHAPDYSLVRYTVEHAIDFVQGMHQLAALFEKDELPVL
                     LHTILERIRLLLGKGEIPRMLQVKNKKKLTAADHLQFGHYLLYHFKSPLIDLIDFFGR
                     LEAYHSLAIAIDHHQLQFPDFQDSEEPNFNASGLRHILLQQPVSYDVKLNLSTNFVFL
                     TGANMAGKSTFIKAVGVAAYLAHIGMAVPAQSMQVSLFHGIISNIQVSDNLAKGESYF
                     YNEVQRIKNTITRINNGKKWLVLIDELFKGTNVQDAMRCSSTVIKGLLKIRNSLFILS
                     THLYEIGEELKPFPNITFRYFETHVENDQLYFSYQLKEGISNDRLGYLILKREGVVNM
                     IDNL"
     gene            1232..>2267
                     /locus_tag="VLL95_07475"
     CDS             1232..>2267
                     /locus_tag="VLL95_07475"
                     /inference="COORDINATES: protein motif:HMM:NF014335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0034219 - carbohydrate transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HSR38740.1"
                     /translation="MRFPSLLFLLLLIGGFAHAQQPVVSNKHFSFGSYGRAGVGFGVG
                     LQGNFPRPLNLNGMGSIGGRFEEIDYVELALAGHFTPVSASKDTTDINFQTRLSFFTT
                     YGQIIGNVTSKSIGGITAAMPELFAEAKHIRGSKWSVWAGARFYRGDDIHVIDHFYFD
                     DHSSQGFGVKYNNTQFALVFPGSVDTNTTLPPYFFLNIMNGTPVLGLRNRTVSIIEHT
                     FPQKNGYLKLLGDFHRLADASQKDTSSYLNYPSDIGFVVGLKHNVNLKTAMPGSFQAF
                     SIRYGSGIANGGDGGGTRTFLTYGGPNLETKKFNNAFSLAITETILLNLSRHYSINGY
                     GIFTKSRGASD"
BASE COUNT          592 a          583 c          517 g          575 t
ORIGIN      
        1 tgagtcatcc ttttgaagaa ctgaagccca tcctggaaac acaggcggtg ctgaagttga
       61 tgcagcgaca cctgcaacaa tggcctggca ccatcaccaa cggcactgtt atggtgctgg
      121 agaaatttta tcaatcacag atcgaccgga tacctccgca ggccaacgct gtcgcggcca
      181 tcacctataa gatgctgcac gcccccgact attcgctggt gcgctataca gtggagcatg
      241 ccatcgattt tgtacagggc atgcaccaac tggctgccct atttgagaag gatgaactgc
      301 ccgtgttgct gcacactatc ctggagcgca tccggctact gcttggcaaa ggtgaaattc
      361 cacgcatgct gcaggtaaag aacaaaaaga aacttacggc agccgaccac ctccagtttg
      421 gtcattacct gctctaccat ttcaaaagcc cgctgattga tctcattgat ttctttggtc
      481 gcctcgaagc ctatcatagc ctcgccattg ccatcgatca tcatcaattg cagtttcctg
      541 atttccagga ttcagaagag cccaatttca atgcatcggg gttgcgccat atcctgctgc
      601 agcagccggt ttcctacgat gtaaaactca acctgtcgac caacttcgta ttccttaccg
      661 gtgccaacat ggccggcaaa agcaccttca ttaaagcagt aggcgtggca gcatacctgg
      721 ctcacatagg catggcggtg ccggcccaaa gcatgcaggt ctcgctgttt catggcatca
      781 tcagcaatat ccaggtaagc gataatcttg ccaaaggaga aagctatttc tacaacgaag
      841 tacaacgcat caagaacacc atcaccagga tcaacaacgg gaaaaaatgg ctggtgctga
      901 ttgatgaatt gttcaaaggc accaacgtgc aggatgccat gcgctgctct tctaccgtaa
      961 tcaaaggcct gttgaaaatc cgcaattcac tgttcatttt gtcaacgcac ctttatgaga
     1021 tcggcgaaga attaaagcct tttcccaaca tcactttccg ctatttcgaa actcatgtcg
     1081 agaacgatca actgtatttc agttaccagt taaaagaggg tatcagcaac gacaggctcg
     1141 gctacctgat cctgaaacga gaaggcgtgg tgaatatgat tgacaattta taagtatctt
     1201 ttggactgtt tgtgcgctac aagacagtct tatgagattt ccctccttgc tttttcttct
     1261 tttactgatt gggggttttg cccatgccca gcagccggtt gtttcaaaca aacatttctc
     1321 gtttggctcc tatggccggg caggggttgg ctttggcgta ggattgcaag gcaattttcc
     1381 acgcccactc aacctcaatg gcatgggatc aattggggga agatttgaag agatcgacta
     1441 tgttgaactg gcgttggcag ggcattttac accggttagt gcatccaaag acaccactga
     1501 catcaatttt caaacaagac tttctttttt taccacctat gggcagatca ttggcaatgt
     1561 gaccagcaaa tccattggcg gcattacagc tgccatgcca gagctgtttg ccgaagccaa
     1621 acacatcagg ggaagcaaat ggagtgtatg ggcaggggcc cgtttttatc gtggtgacga
     1681 catacatgtc atcgaccatt tttatttcga tgaccacagt tcacagggat ttggcgtgaa
     1741 atacaacaac acacagtttg ccctggtgtt tcccggatca gtggacacca atactaccct
     1801 gcccccgtat ttctttctca acattatgaa tggcacaccg gtgctgggtt tgcgcaaccg
     1861 gaccgtgagc attatagaac atactttccc gcaaaagaat ggctacctga agctgctggg
     1921 tgatttccat cggctggccg atgcctcgca aaaggacacc agcagctatc tcaattatcc
     1981 ttccgatatc ggatttgttg tgggccttaa acacaatgtc aacctgaaaa ctgccatgcc
     2041 aggatctttc caggcattca gtatccgcta tggatccggt atagccaatg gtggcgatgg
     2101 cggcggcacc aggacattcc tgacctacgg cgggcccaat ctcgaaacca aaaaattcaa
     2161 caatgccttt tcgttggcca ttactgaaac cattttgctc aacctgagca ggcattattc
     2221 tataaatggt tatggcatat ttaccaaaag ccgcggtgcc agcgaca
//
LOCUS       DATIQF010000452         2009 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_7523, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000452 DATIQF010000000
VERSION     DATIQF010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7523"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..779)
                     /gene="trpB"
                     /locus_tag="VLL95_07480"
     CDS             complement(<1..779)
                     /gene="trpB"
                     /locus_tag="VLL95_07480"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HSR38741.1"
                     /translation="METTTSYKQPNAQGYYGKFGGAYIPEMLHRNVEELRSRYLDIMY
                     EAEFQAAFQQLLRDYVGRPTPLFYAERLSKEHGTNIYLKREDLCHTGAHKINNTVGQI
                     LLAQRLGKKRIIAETGAGQHGVATATVCALKGIECIVYMGEKDIERQAPNVARMKMLG
                     AKVVPATSGSKTLKDATNEAIRDWINNPNDTHYIIGSVVGPHPYPDMVARFQSVISEE
                     VRWQLKEKTGNELPTHVMACVGGGSNAAGAFYHFLDEPSVN"
     gene            complement(944..1597)
                     /locus_tag="VLL95_07485"
                     /pseudo
     CDS             complement(944..1597)
                     /locus_tag="VLL95_07485"
                     /inference="COORDINATES: protein motif:HMM:NF012900.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
     gene            complement(1594..>2009)
                     /locus_tag="VLL95_07490"
     CDS             complement(1594..>2009)
                     /locus_tag="VLL95_07490"
                     /inference="COORDINATES: protein motif:HMM:NF012444.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38742.1"
                     /translation="KAYGADLILLIAAILSPAQVQELAAEAKSIGLEVLLELHAEEEL
                     AHVCEAVDMVGINNRNLKNFEVNLDHSIRMAAALPAHKLRIAESGIHSAEAAVYLKQH
                     GFDGFLIGEYFMKQPDPAIAFAEFVNQFNQLHESV"
BASE COUNT          425 a          539 c          504 g          541 t
ORIGIN      
        1 atgtttacgg aaggctcatc aaggaaatga taaaaagccc cggcggcgtt actgccaccc
       61 cccacacagg ccatcacatg cgtgggcagt tcattgccag ttttttcctt gagctgccag
      121 cgcacttctt cgctgatgac actctggaag cgggccacca tatcggggta aggatgcggg
      181 cctactacgc tgccgatgat gtaatgcgta tcgttgggat tgttgatcca gtcgcggatg
      241 gcttcgttgg tggcgtcctt caatgttttg ctacccgaag tagccggcac cactttggct
      301 cccagcattt tcatgcgggc cacattgggc gcctggcgtt caatgtcctt ctcgcccatg
      361 tacacaatgc actcaatgcc tttgagggcg cacacggtag ccgtggccac accatgctgg
      421 ccggcgccgg tttcggcaat gatgcgcttt ttgcccagcc gctgtgccag cagtatctgg
      481 cccaccgtgt tgttgatctt gtgcgcaccg gtatggcaca agtcttcccg cttgaggtag
      541 atattggtgc catgctcctt gctcaaacgc tcggcataaa acagcggtgt aggacgaccc
      601 acataatccc gaagcagctg ctgaaacgct gcctgaaatt ccgcctcgta catgatgtcg
      661 aggtagcggc tgcggagttc ttccacgttg cggtgcagca tctcggggat gtaagcgccg
      721 ccgaattttc cgtaataacc ctgggcgttg ggttgcttgt atgaagttgt tgtttccatt
      781 gtcttctatt ttgaaccaca gagacacttt ccgacacatc ggatcacagc gcagtgtttc
      841 tcagtgtcgt cgtgcctctg tggttctgat taacggtcaa atgaagcact gcagtcaaag
      901 tgattgcgac gcaacgcaga cgccgcctgc actgccgctg gtatcataat gcttttatat
      961 cgttataaaa tttgctcaat ttggccatgt cttttacgcc ggggctggtt tcgaatttgc
     1021 tgttcacatc cagcgcaaat aaggctttgg cagcaggctc tttcatgaat tgctgcacat
     1081 cggccacatc atcggggccg atgccgccac tcaggaaata aggcttgccc acatccaccg
     1141 ttttcagcaa atcccagttg aactttttgc cggtgccgcc ataaggattt tcggcacctt
     1201 gtgtcaacgg ttgtgtgtcg aacaggaaca tgtcgcagat gtccatatac tcgtggatct
     1261 tctacgcaat gttgtcgcct tcggcaatgc gaaaagcttt taccactgaa atatagtcgg
     1321 cgatcttttc gcaaaacttg ggggtttcat cgccatgcag ctgtaccatt tgcaggcggc
     1381 attcatccac catgtatttg atctcgtcta cactcgcatt tacaaacacg cccaccttgt
     1441 tgatggtttt aaaagctttg atctgaaggg tagtcatgtg gcgcaacgca tagcgggggc
     1501 tctttgggta gaaaatgaag cccgcaaagg tgacttccat tttctccagc gcctctacct
     1561 gtgccggctc cgtcatgcca catactttta atctcatacc gattcgtgta gttgattgaa
     1621 ttggtttacg aattcggcaa aggcaatcgc aggatcgggt tgtttcatga aatactcacc
     1681 aatcagaaat ccgtcgaacc cgtgttgctt caaatataca gcggcttcag cactgtgtat
     1741 gccgctttcg gcgatgcgca gtttgtgcgc aggcaaggcc gctgccatac ggatgctgtg
     1801 gtcaagattc acctcaaaat ttttgaggtt gcggttgtta atgcccacca tgtccactgc
     1861 ttcgcataca tgcgccagtt cttcttccgc atgcagctcc agcaatactt ccaggccaat
     1921 gcttttggct tccgccgcca gttcctgcac ctgcgccggt gaaaggatag cagcaatcag
     1981 cagaattaag tctgcgccgt aagctttgg
//
LOCUS       DATIQF010000453         1752 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_98517, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000453 DATIQF010000000
VERSION     DATIQF010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98517"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(324..923)
                     /gene="hisIE"
                     /locus_tag="VLL95_07495"
     CDS             complement(324..923)
                     /gene="hisIE"
                     /locus_tag="VLL95_07495"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: protein motif:HMM:NF002747.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HSR38743.1"
                     /translation="MNIDYSKYSDGLVPAVVQDAITGKVLMVGFMNQEAVDKTIELGK
                     VTFYSRSKQRLWTKGETSDNFLLYKEMIVDCDNDTLLVKALPQGPTCHTGADTCFFES
                     NTSNPADFLWYLEQVIAGRKNNPSEESYTSKLFARGINKVAQKVGEEAVELVIESKDD
                     NKDLFLGEAADLMFHYIVLLQAKGYSLQDVVEVLRKRHK"
     gene            complement(920..1081)
                     /locus_tag="VLL95_07500"
     CDS             complement(920..1081)
                     /locus_tag="VLL95_07500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38744.1"
                     /translation="MIWLILIGSMLLGIMLIRFTYKIEKRRMDKDREATAAQMKEFMD
                     MLNQKKEKK"
     gene            complement(1078..>1752)
                     /locus_tag="VLL95_07505"
     CDS             complement(1078..>1752)
                     /locus_tag="VLL95_07505"
                     /inference="COORDINATES: protein motif:HMM:NF013168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HSR38745.1"
                     /translation="QYARDGADELVFLDITATNEGRKTFAELVLQIAKHLNIPFTVGG
                     GISSIEDASRLLEAGADKVSINSSAVKRPALVDELAKEFGSQFVVVAIDTRSVPADSS
                     FKPPLGGLGVVHTHGGSRPTELVTIDWAKEVFNRGAGEILLTSMNTDGAKTGFDLPIT
                     KAVVEAVDIPVIASGGAGTMQHFVDVFTQAGADAGLAASIFHYGEIPVPKLKQYLATQ
                     QIPVRL"
BASE COUNT          441 a          450 c          390 g          471 t
ORIGIN      
        1 tgctgcagca gctagataag tccttgcttt tttattgaaa aataatggcc gccaatactc
       61 atcaaagcaa ttatggtgat tagactggaa gttattattt ctccaattgt aaaggttttt
      121 cgaataaaca caaatgcaac cgaagcaagc aagacagcaa tagctgtata cagaatagtg
      181 tgacgcagaa agtcagcctt attgctgaat tttcgaatga tgaaggggta aatttttgca
      241 caaatcatca ggcaaagcga aataagtaat agtgacattg ggacttattt atcgaaataa
      301 agataacaac accacatcaa aactcactta tgccttttcc tcagcacttc caccacatcc
      361 tgcaatgaat accctttggc ctgcagcaat acgatgtaat gaaacatcag gtcggctgct
      421 tcgccaagga acaaatcctt gttgtcatcc tttgattcaa tcaccagttc cacggcttcc
      481 tctcccacct tttgcgccac tttgttgatg ccgcgggcaa acagtttgga cgtataagat
      541 tcctctgaag gattgttttt gcggcctgca atcacctgct cgaggtacca caggaaatcg
      601 gccgggttgc tggtattgct ttcgaagaaa caagtgtcgg cgccggtatg gcaggtaggt
      661 ccctgtggca gcgctttcac caacagggta tcgttgtcac aatccacaat catttccttg
      721 tacagcaaaa aattgtcgct ggtctcgcct ttggtccaga ggcgctgctt gcttcggctg
      781 taaaaagtca ccttgcccag ttcgatggtt ttgtctactg cttcctggtt catgaatccc
      841 accatcagca ctttgccggt aatggcatcc tgcactacgg ccggtaccag gccatcgctg
      901 tatttgctat agtcaatgtt catttctttt cctttttctg gttcagcatg tccatgaatt
      961 ccttcatctg cgccgcagtg gcttcgcggt ctttgtccat cctgcgtttt tcgattttgt
     1021 aggtaaaccg aatgagcatg atgcccagca gcatggaacc aatcagtatc agccagatca
     1081 taaccgtacg gggatttgtt gggtggcaag atattgtttc aatttcggaa ccggtatttc
     1141 gccataatga aaaatgctgg cggccaggcc cgcatcagct ccggcttgtg taaacacatc
     1201 cacaaaatgc tgcatggtgc cggctcctcc ggaagcgatc accggaatgt ccaccgcctc
     1261 caccaccgct ttggtgatgg gcaggtcaaa accggttttg gcgccatcgg tattcatgct
     1321 ggtgagcaga atttcgccgg caccgcgatt gaaaacttct ttggcccaat caatcgttac
     1381 caattctgta ggacgcgaac caccatgtgt atgaacaacc cccaaacccc ctaaaggggg
     1441 cttgaaagaa ctgtctgccg gaacagatct tgtatcaatt gccactacaa caaactggct
     1501 gccgaattcc ttggccagtt catctaccaa tgcaggtcgc tttaccgctg aggaattgat
     1561 agaaactttg tcagcccctg cttccagcaa acgcgacgca tcttcaatac tgctgatgcc
     1621 accgcccacc gtgaagggaa tgttgaggtg ttttgcgatc tgcaacacca gttcggcaaa
     1681 agtcttgcgg ccctcattgg tggctgtgat gtcgagaaac accagttcat ccgcgccatc
     1741 cctcgcatat tg
//
LOCUS       DATIQF010000454         1518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_83519, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000454 DATIQF010000000
VERSION     DATIQF010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83519"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..705)
                     /locus_tag="VLL95_07510"
     CDS             complement(<1..705)
                     /locus_tag="VLL95_07510"
                     /inference="COORDINATES: protein motif:HMM:NF016424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HSR38746.1"
                     /translation="MLALTVLAQKVPPKPNPPRLVNDFVKLLEPDQKQHLEEKLVAYD
                     DSTSIQIAVVIVPTLDDYDAVDYATKLGREWGVGNKKTNNGVVLLVSTEEGKRKVFIA
                     PGYGLEGALPDIICKRIVEDEIIPEFKQQNFYRGLSRGTDAIIKASRGEYKAPEGYQN
                     RKKGKGDGGAVFVFVLILVLVILFIGRRGGGGRGGGMISRRGYHDFMPPIWFFPTGGK
                     SSGGGGWSGGGGGFGGF"
     gene            complement(767..1237)
                     /locus_tag="VLL95_07515"
     CDS             complement(767..1237)
                     /locus_tag="VLL95_07515"
                     /inference="COORDINATES: protein motif:HMM:NF016424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HSR38747.1"
                     /translation="MGLFNLWKPRGAAKYISAPDNQRIVAAVRAAEQQTSGEVRVFLE
                     TRCKYVNPIDRAAEIFFGLKMDQTDQRNGVLVYVAFKDHQFAIFADEGIYRATGADYW
                     HTEANKMLEEFSREHYVDGLVNVIGDIGQALKQAFPYDNKGDKNELPDDIVFGS"
     gene            complement(1249..>1518)
                     /locus_tag="VLL95_07520"
     CDS             complement(1249..>1518)
                     /locus_tag="VLL95_07520"
                     /inference="COORDINATES: protein motif:HMM:NF015944.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HSR38748.1"
                     /translation="SSGIGRLLAVVENYPDLKANQNFRDLQVQLEGTENRIKVARNDF
                     NAAVQEYNTKVRRFPMNIIAGLFGFKVKEGFKAEAGSERAPEVKF"
BASE COUNT          343 a          437 c          347 g          391 t
ORIGIN      
        1 aaatccgccg aagccgccgc caccgccgct ccagccgcca ccaccactgc ttttgccacc
       61 ggtggggaag aaccagatgg gtggcatgaa atcatggtag cccctgcggc tgatcatgcc
      121 gccgccacgg ccaccgccgc cacgacgtcc tataaacagg atgaccagca ctaaaatgag
      181 tacgaaaacg aaaacagctc cgccatcgcc tttgcccttt ttgcggtttt gatagccttc
      241 aggcgctttg tattctcccc gggatgcttt gatgatggca tcggtacctc tcgacaagcc
      301 gcggtaaaaa ttctgttgct tgaactcagg gatgatctcg tcttctacga tgcgtttgca
      361 aataatatcg ggcaaggcgc cttccaatcc atagcccggc gcaatgaata ctttgcgctt
      421 gccttcttcg gtgctcacca gcagtaccac gccattgttg gtcttcttgt tgcctacgcc
      481 ccattcacgt cccagtttgg tggcataatc caccgcatcg taatcatcca gcgtaggaac
      541 gatgaccacc gcaatctgta tcgaagtgct gtcgtcgtaa gccaccagct tttcttccag
      601 gtgctgcttc tggtcgggct ccagcaattt gacaaagtca ttcaccagcc tgggcggatt
      661 gggtttgggc ggcacctttt gtgccagcac agtcaatgcc agcaccgaaa aaaatatgac
      721 gagaatttgc ttcatggtaa atggagccgc caggctccgt cgttattcag gatccaaaaa
      781 ctatatcatc gggcaactca ttcttatccc ctttattatc gtagggaaaa gcctgtttca
      841 atgcctgccc gatatcgcct atcacattca ccaaaccgtc gacataatgc tccctggaaa
      901 actcttccag cattttgttg gcctcagtat gccaatagtc ggcgcccgtg gcgcggtata
      961 taccttcatc ggcaaaaatg gcgaactggt gatctttaaa agccacatac accagtacgc
     1021 catttcgctg atcggtttgg tccattttca acccaaagaa aatttcagcc gccctgtcaa
     1081 tagggtttac atatttgcac cgggtttcca gaaatacccg cacctcgcca ctggtttgtt
     1141 gttcggcagc ccttacggca gccacaatcc gctggttatc tggtgcagaa atgtatttag
     1201 cagccccccg gggcttccat aagttgaaaa gacccacttc gtattgattt agaatttcac
     1261 ttccggagca cgttcgctgc ccgcttcagc cttgaaccct tctttcactt taaagccaaa
     1321 caggccggca ataatgttca tgggaaagcg acgcactttt gtgttgtact cctgcacagc
     1381 tgcgttgaag tcgttgcgtg caactttgat gcggttttct gttccttcca gttgcacctg
     1441 caagtcgcgg aaattctggt tggctttcag gtcggggtag ttttcaacca cggccagcaa
     1501 acgaccgatg ccactgct
//
LOCUS       DATIQF010000455         1579 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_190009,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000455 DATIQF010000000
VERSION     DATIQF010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1579
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190009"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..185
                     /locus_tag="VLL95_07525"
     CDS             <1..185
                     /locus_tag="VLL95_07525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38749.1"
                     /translation="QDPGMGNLVIHEWKGIATDLRKEIPGKLKWKYLFSPPGWSHDGS
                     RRTSEELRRAETDNQI"
     gene            complement(267..1478)
                     /locus_tag="VLL95_07530"
     CDS             complement(267..1478)
                     /locus_tag="VLL95_07530"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HSR38750.1"
                     /translation="MKRLLPVALTLLSIHSFSQDVLYGVTSDQAGTINWTKIRMVERD
                     GKSANSVLLDATKPSYYLNARTQKKVTPLINGIGPDELPAPAGIAALAYDEKNGRLYF
                     APMFREGGIRFIDLNTGAQQKAVTIFDDAYNLVDRAKDGEGKNITRMAIGLKGYGYAI
                     SNDGNSFLRFSTAGTPGIENLGTLVDDEANGANTVHSPCTAWGGDMVAAATGDLFLFT
                     MRQQVFKINPDTRVATYVGTIKGPDNAFTVNGAAVTRDGQVVLSSSVKAGSKWVIEDM
                     NTLEAKEVNDPNWLNASDLASPYLLFAKSAAKTTVAPKSIATGKVGMYPNPVTQGVLT
                     VVFNDLPAGKYYIDMLNAAGVGMQSKAVNVQQKVQTETINTNRLAKGVYVVRITNASR
                     QEAFVEKVMVQ"
BASE COUNT          384 a          389 c          383 g          423 t
ORIGIN      
        1 tgcaggatcc tggtatgggc aacctggtca tccatgaatg gaaaggaata gcgacagacc
       61 tccgcaaaga aattcctggg aagctgaaat ggaaatacct tttttctcca cccgggtgga
      121 gccacgacgg aagccgcaga acgagtgaag aactcaggag agcagaaact gacaaccaaa
      181 tttgaataac gaaaaacacc gcccttttta aggcggtgtt ttttatgggt acacaatgtg
      241 ttgcaggtac tagtgccagg atatacttac tgaaccatta ctttttcaac aaaggcttcc
      301 tggcgggagg cgttggtgat gcgtaccaca tacactcctt ttgccagcct gttggtattg
      361 atggtttcag tttgtacctt ttgctgcaca ttgacggcct tgctttgcat gcccacaccg
      421 gcagcattca gcatgtcgat gtagtatttg ccggcaggca aatcattgaa tacaacggtg
      481 agcacacctt gagtaacagg gttggggtac atgccaactt tccctgtggc aattgatttg
      541 ggggccaccg tagttttggc agctgatttg gcaaacaaca aataaggcga agccaggtcc
      601 gaagcattca accagttagg atcatttact tctttggctt ccaatgtgtt catatcctca
      661 atcacccatt tgcttccggc ctttaccgag gaagacaaca caacctgtcc atcgcgggtt
      721 accgccgcgc cattcactgt aaacgcatta tccggtcctt tgatggtgcc aacatacgta
      781 gctaccctcg tgtccggatt gatcttgaat acctgctggc gcatggtgaa taggaacaaa
      841 tcaccagtag cggctgctac catatcgccg ccccacgcgg tgcaagggct gtgaacggta
      901 ttggctccat tggcttcatc gtcaaccagg gttcccaggt tttcgatgcc aggggttccg
      961 gcagttgaaa aacggaggaa gctatttcca tcgttgctga tggcataacc atatcctttg
     1021 aggccaatgg ccattcgggt gatgtttttg ccttcgccgt ctttggcacg atcaaccagg
     1081 ttgtaggcat catcaaatat ggtcacggct ttttgctgtg caccagtgtt caggtcaatg
     1141 aacctgatac ctccttcacg aaacataggg gcgaaataca gcctgccatt tttttcatcg
     1201 taagccaagg cagcaatgcc tgccggtgcc ggcagttcat caggaccaat tccattgatg
     1261 agaggagtga cttttttttg cgtcctggca ttcaggtaat aagaaggctt ggtggcatcc
     1321 agcaaaacgc tgttggcaga ttttccgtct ctttccacca ttctgatctt cgtccagttg
     1381 atggtgccgg cctgatcact cgtcacgcca tacagtacat cctgcgagaa agaatggata
     1441 gacagcagtg ttagtgcaac gggtaaaagt cttttcatag ggttctattt ctactgaaaa
     1501 gttaccactc ttttgcaaga tttcaaacgg aacagccttg tttcattagc gcccctggat
     1561 ggcttccacc gcgtttttc
//
LOCUS       DATIQF010000456         2264 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_68308, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000456 DATIQF010000000
VERSION     DATIQF010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68308"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..249
                     /locus_tag="VLL95_07535"
     CDS             <1..249
                     /locus_tag="VLL95_07535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38751.1"
                     /translation="KVRRANNKQHNVWEPSFDWKHCTSVAFMKQKLDYYHLNPCKGKW
                     MLAAAPTDYTHSSAGFYFTGVQGVYPVTNYLEVADLYF"
     gene            complement(310..1326)
                     /locus_tag="VLL95_07540"
     CDS             complement(310..1326)
                     /locus_tag="VLL95_07540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38752.1"
                     /translation="MKTCHLAFLLLAAFSIACNEALDFRTSSHTRDGLPQQKREATGT
                     ANLVFRSADNGQTWQDISDGLPEPVQDDYGLGRNAFFADGNGLWLTDGKGIYHSQPNF
                     TAPFWTNASIPAEHSNITTGTNGIFAFHHLAGIFQKTIGTGEWSPVFTDFREQRVRSV
                     LETAGGTLFISTDKGLYKSTNRGKTWKLLPCGGLGGKLVESNGVLLTTGPRGIMRSTD
                     DGENWYWVLQEGGVGIDVAPIDGGFASITFSTATNTRRVRTSYDGGKTWQPIDAGLPA
                     QLSIASIIQLGDDFFCGHPKGIFKSSDKGKTWQLILPSVGDKVFHLWVSGNVIYAIPR
                     IVGC"
     gene            1510..>2264
                     /locus_tag="VLL95_07545"
     CDS             1510..>2264
                     /locus_tag="VLL95_07545"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HSR38753.1"
                     /translation="MVAVLMAAVAFISKKDEMPGKHVELVLRSLGHQLLLSAKDSSSR
                     VLPVRQLNEHTYQVSFQNDFGFVSDSLINIVQRTFEKEAPARHYIVNLKTCDQKETVF
                     AFEINGQAGDLAPCRGRKLAVGCYLIEIEFLKETSFNSYWWLLLLIPLGFVGFYVKGR
                     FRQKEDTALMPGTADYLPLGRFQFYAGNNLLTMENKRIALSEKETQALTIFAANRNQV
                     VEREQLMKEIWEDNGLVVISRNVDVLVSKLRKK"
BASE COUNT          558 a          524 c          614 g          568 t
ORIGIN      
        1 aaggtgcgca gggcaaataa taagcaacac aatgtatggg aaccttcctt cgactggaag
       61 cattgtacca gtgtggcatt tatgaagcag aagctcgatt actaccattt gaacccgtgc
      121 aaaggcaaat ggatgctggc ggctgcaccc actgattata cacacagttc agccggcttt
      181 tactttaccg gtgtgcaggg cgtttatccg gttaccaatt acctggaagt ggcggatttg
      241 tatttctgaa ttccggatga ttgacgcaac gtcccctgcg ggagacgttg ctgggaagca
      301 agaatggttt cagcatccta caatcctggg tatggcatag atcacgttac ctgaaaccca
      361 taaatggaag accttgtctc caacagaagg aagtatcagt tgccaggttt tgcccttgtc
      421 tgatgatttg aaaatgccct tgggatgacc acagaaaaag tcatcgccca actggatgat
      481 ggaggcgatg gaaagttgcg ccggaaggcc ggcatcaatg ggctgccagg ttttgccgcc
      541 gtcgtaggag gttcgcactc tccgggtgtt ggtagcggta ctgaatgtga tcgacgcgaa
      601 tccaccgtcg atcggagcca catcaatgcc aacgccgccc tcttgcagca cccaatacca
      661 gttttcacca tcatcggtcg atcgcataat gccccgtggg ccggtggtaa ggagtacccc
      721 gttcgactct accaattttc cacccaggcc tccgcagggg agaagcttcc aggttttgcc
      781 acggttggtg gatttataca ggcccttgtc ggtgctgatg aaaagggtac ctccggcagt
      841 ttccaacaca ctgcgtaccc gctgctcccg gaaatcggtg aataccggcg accattctcc
      901 cgtgccgatt gttttttgaa aaatgccagc caggtgatgg aatgcaaaga tcccgttggt
      961 accagtggta atgttgctgt gttcagccgg gatggacgcg ttggtccaaa atggagccgt
     1021 gaaattgggt tggctgtgat agatcccttt tccgtcggtc agccagagcc cgttgccatc
     1081 tgcaaaaaag gcattcctgc caaggccata gtcatcttgc accggttcgg gcaggccgtc
     1141 gctgatgtcc tgccatgttt ggccgttatc ggcagatctg aaaacgaggt ttgccgttcc
     1201 ggtcgcttct cttttttgtt ggggcaggcc atccctggtg tgagaggagg ttcgaaaatc
     1261 caatgcttca ttacaggcaa tggagaatgc agcgaggagc agaaaggcga ggtgacaggt
     1321 cttcattgga atagatgatg gggtgatgga atagggcaaa gctacctggc ctctgctgcc
     1381 gtgaaggttt tcggcagtaa aaagatgtaa aggacgcgta aaacctttgt aaaaccgact
     1441 gcctgaggct ttatggacta ttttgcacac atgaagccac ccgtgttgcc caggtattca
     1501 atcatcatca tggttgctgt tttgatggcg gcggtcgcat ttatcagcaa aaaggatgaa
     1561 atgcccggga aacatgtaga gctggtattg cgcagcctgg gacaccaact gttgctatct
     1621 gccaaagatt cttcctcccg ggtgctgccg gtgaggcaat tgaatgaaca tacctaccag
     1681 gtctcctttc aaaacgactt tggttttgtt tcagattcgc tcatcaatat agtgcagcgg
     1741 acttttgaga aagaagcccc ggccaggcat tatatcgtca atctgaaaac ttgtgaccaa
     1801 aaggaaactg tgtttgcttt tgagatcaat ggccaggcag gcgatttggc tccatgcagg
     1861 gggcgtaaac tggcggtggg ttgctatcta atcgaaattg agtttctcaa ggaaaccagt
     1921 ttcaattcct attggtggtt gctcttgctg attcccttgg gttttgttgg gttttatgtg
     1981 aagggcaggt tccgccaaaa agaagatacc gcattaatgc cgggcactgc cgactacctg
     2041 ccattgggcc gttttcagtt ttatgccggc aataacctgc ttaccatgga gaacaagcgg
     2101 attgcgcttt cggaaaaaga gacacaagct ctcaccatat ttgcagccaa caggaaccag
     2161 gtagtagaaa gggaacaact gatgaaagaa atttgggaag acaacggcct ggttgtcata
     2221 agcagaaatg tagatgtgct ggtgtctaaa ctgcgtaaga aatt
//
LOCUS       DATIQF010000457         2051 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_281088,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000457 DATIQF010000000
VERSION     DATIQF010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2051
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281088"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..894
                     /locus_tag="VLL95_07550"
     CDS             <1..894
                     /locus_tag="VLL95_07550"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSR38754.1"
                     /translation="LHEKLNALAASGISIILVTSAGEMPACITHVLQLHNDASHQYVA
                     RAAWHATSREQALHPLDQQGFQQMLLQLIKPSSFEFEEAIRLEDVSVAYGDKKVLQHI
                     NWTVKRGERWLLHGPNGVGKSTLLSLITADHTQAYANKVFLFGKRRGSGESIWDIKKR
                     IGFVSPELQMYFQQTATCYHTVASGIFDTIGLFRTLHPADEERVQQWLHLFGLQKDQH
                     KPFRSFSAGEQRLILLVRALIKNPPLLVLDEPCQGLDEEQQRILLRWIDEICEAGQKT
                     MVFVTHYLHERPNCIDRELSL"
     gene            complement(1025..>2051)
                     /locus_tag="VLL95_07555"
     CDS             complement(1025..>2051)
                     /locus_tag="VLL95_07555"
                     /inference="COORDINATES: protein motif:HMM:NF023428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HSR38755.1"
                     /translation="EVIDVAKKQQGAILFIDEIHRFNKSQQDALLGAVEKGIITLIGA
                     TTENPSFEVNSALLSRSQVYVLKPLDATQLVQLLHTAMQKDEVLKVLPIELAETEALI
                     RLSGGDARRLLNLFEISIQALQAAGAKSLRVTDDIVMKAAQSKVALYDKKGEQHYDII
                     SAFIKSMRGSDPNGAIYWMARMIAGGEEYEFIARRMVIFASEDIGNANPTAIVMANAC
                     FEAVRKIGKPEGRIILGQCCTYLASSPKSNASYRAIDNALALVEKYGDLPVPLHIRNA
                     PTKLMKGLGYGKDYQYSHMGEGNFIEQEYLPDEIKNAKLYDPGKNTREEELRRFLKAR
                     WGDKYNY"
BASE COUNT          460 a          543 c          521 g          527 t
ORIGIN      
        1 ctgcatgaaa aactgaacgc actggctgca tcgggtatta gtatcatact ggtaacttca
       61 gccggcgaaa tgcctgcctg catcacccac gtgctgcaat tgcacaatga tgccagccat
      121 caatatgtgg cgagggcagc atggcacgcc acttcccggg agcaagccct gcatcctttg
      181 gaccagcaag gcttccagca aatgctgctg caactcatta agccatcatc gtttgaattt
      241 gaagaagcca tccggctgga agatgtatca gtagcgtatg gcgacaaaaa agtattgcag
      301 cacatcaact ggacggtgaa gcgtggcgaa cgatggctgt tgcatggccc caatggcgta
      361 ggcaaaagca ccttgctcag cctgatcact gccgatcata cacaggccta tgccaataag
      421 gtttttctgt ttggcaaaag acgcggcagt ggtgagagca tttgggatat caagaaacgc
      481 atcggctttg tgtcgcctga attgcagatg tatttccagc aaaccgctac ctgctatcat
      541 acggtggcca gcggcatttt tgataccatc ggtttgttca ggacactgca ccctgccgat
      601 gaagaaaggg tgcagcaatg gctgcatttg tttggcctgc aaaaagacca gcacaagccc
      661 tttcgcagtt tttcggccgg ggagcaacgg ctgatcttac tggtgcgggc cctcatcaaa
      721 aacccgccgc tgctggtgct ggatgaacct tgccagggac tggatgagga gcaacaacgc
      781 attctgcttc gctggattga tgagatttgt gaagcgggac aaaagacgat ggtgtttgtg
      841 acgcattatt tgcacgaaag acccaattgt attgacaggg agttgagtct ttgaaccctc
      901 ccccgcctcc ctaaagggag gagctaacgt cggttccgtt tgtagcctgc tttgtttaca
      961 tcaactaaaa acaaagcact gatccctcaa ctcgtgaaca ctggaacttg tgaacccgtg
     1021 aactttaata gttgtacttg tctccccacc ttgctttcaa aaacctgcgc aactcctctt
     1081 ctcttgtatt ctttcccgga tcatacagtt tggcattttt gatttcatcc ggcaaatatt
     1141 cctgctcaat gaaattgcct tcgcccatgt gcgaatactg gtagtctttt ccatagccca
     1201 gtcccttcat cagtttggtg ggcgcattgc ggatgtgcag cggcaccggc aggtcgccgt
     1261 atttttcaac caatgccagg gcgttatcta tcgccctgta cgaggcattg ctcttgggtg
     1321 aagaggcgag gtaagtgcag cattgcccga gtatgatgcg tccttcgggt ttgccgattt
     1381 tgcgcaccgc ttcaaaacag gcattcgcca tgacgatggc cgtggggttg gcattgccaa
     1441 tgtcttcgct ggcgaagatg accatgcggc gggcgatgaa ttcatattct tcaccaccgg
     1501 ctatcatgcg ggccatccag taaatggcgc cattgggatc gctgccccgc atgctcttga
     1561 taaaggcgga tatgatatcg tagtgttgct cacctttctt gtcgtacagc gccactttgc
     1621 tttgcgccgc tttcatcacg atgtcatccg taacccgcag tgatttggcg cctgccgcct
     1681 gcaaagcctg tatgctgatc tcaaacaaat tcagcagccg gcgggcatcg ccaccactca
     1741 ggcgaatgag tgcttcggtc tccgccagtt caatcggcag cactttcagc acttcgtctt
     1801 tctgcatggc agtatgcagc agttgcacca gttgcgtggc atccagcggc ttcagcacat
     1861 acacctggct tcggctgagc aaggcactgt ttacttcaaa ggatggattt tcggtggtgg
     1921 cgccgatcag tgtgatgatg cctttctcta ctgcgcccag caatgcatcc tgctggcttt
     1981 tgttgaagcg gtgaatctcg tcaatgaaga gtatagcgcc ttgctgcttc ttcgccacat
     2041 caatcacttc c
//
LOCUS       DATIQF010000458         1598 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_53269, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000458 DATIQF010000000
VERSION     DATIQF010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53269"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..780
                     /locus_tag="VLL95_07560"
     CDS             <1..780
                     /locus_tag="VLL95_07560"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HSR38756.1"
                     /translation="IIEGQGTVAKEILEDLSKIDFLVLPVGGGGLSAGAGYYFKTFSP
                     GTTIIGVEPEGAPSMKESLRFNQPVTLDKIDRFVDGAAVKRVGDLTFGICREVLDIMH
                     LVPEGQVCTTILSLYNEDAIVAEPAGALSIAALEDFRKEIFDKTVVCVVSGSNNDIDR
                     MPEIKERSLQYEGLKHYFLIQFAQRPGALKEFVNNVLGPADDITRFEYMQKTNKEQGP
                     ALVGIELQQRSDYERLIIKMNDYRIDFTEINKDDRLFGYLV"
     gene            910..>1598
                     /locus_tag="VLL95_07565"
     CDS             910..>1598
                     /locus_tag="VLL95_07565"
                     /inference="COORDINATES: protein motif:HMM:NF012531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38757.1"
                     /translation="MTEKQAGLYHPSFEHDACGIGFVAHIKGKKSHQHVSDALTVLEN
                     MEHRGACGCEVNTGDGAGIMIQIPHEFLMAEALKSGVQLPAAGKYGVGVVFFPKNVTS
                     REACRDTFNRTAEQLNLEILWYRKVPVNRETIGETALSVEPEMEQVFVKCPDHISDQT
                     EFDRKLFVLRNYSTHLINNTVKQDAVGFYIASMSSRVLVYKGQLTSHQVREYFPDLSQ
                     KTLTSAFGLVH"
BASE COUNT          423 a          387 c          411 g          377 t
ORIGIN      
        1 atcatagaag gacagggaac tgttgcgaaa gaaatcctgg aggatctttc aaaaatcgat
       61 ttcctggtgt tacctgtagg tggcggaggt ttgtcggcgg gtgccggtta ctatttcaaa
      121 acattcagcc ctggcaccac cattattggc gtggagccgg aaggggctcc atcgatgaaa
      181 gaatccctgc gattcaatca acccgttaca ctcgacaaga ttgaccgctt tgttgatggg
      241 gcggccgtaa agcgggtggg cgatctcact ttcggcattt gccgtgaagt acttgacatc
      301 atgcacctgg tgccggaagg acaggtgtgc actaccattc tgagccttta caacgaagat
      361 gccattgtgg ccgagccggc cggtgcatta tctattgcgg cactggaaga tttccggaaa
      421 gaaatttttg acaagactgt tgtttgcgtg gtgagtggga gcaacaacga cattgaccgt
      481 atgccggaga tcaaagagcg atccctgcag tacgaaggac tcaaacacta cttcctcata
      541 cagtttgccc agcggccggg tgccctcaaa gaattcgtga acaatgtact gggccccgcc
      601 gacgacatca cccgtttcga atacatgcag aaaaccaaca aggagcaggg acctgccctg
      661 gtaggcatag aattacagca acgcagtgac tatgaaaggc tgatcattaa gatgaatgat
      721 taccgcatcg attttacgga aatcaacaag gacgacagat tattcgggta cctcgtttaa
      781 ggaaaacttg ttgataatat tttttcaacg ctttagacga taggatagag attttcgcta
      841 tttttagccg attgcttgcc tgtgattcat taaaatagac agatcattaa actttcttaa
      901 caggcaaaaa tgacagaaaa gcaagctggt ttataccatc cttcctttga gcacgacgca
      961 tgtggtattg gattcgtggc ccatatcaag ggcaagaaat cgcatcagca tgtttccgac
     1021 gcattaacgg ttttagagaa catggagcac cgtggtgcct gtggttgtga agtcaatacc
     1081 ggcgacggtg cgggcatcat gatccagatc ccccatgaat tcctgatggc cgaagcgctg
     1141 aaatcgggtg tccaattgcc tgccgccggg aaatatggcg tgggagtggt tttctttccc
     1201 aagaatgtga ccagccggga agcctgccgc gacacgttca accgcacggc cgaacagctg
     1261 aacctcgaga tattgtggta ccgcaaagtg cctgtgaacc gcgaaaccat tggcgaaacc
     1321 gccttgtcgg tagaacccga aatggaacag gtcttcgtaa aatgccccga ccacatcagc
     1381 gaccagactg aatttgaccg caagctgttt gtgctgcgta attactccac tcacctcatc
     1441 aacaacacgg tgaagcagga tgccgttgga ttttacattg cctccatgtc gtcgcgggtg
     1501 ctggtgtaca aaggacaact gaccagccac caggttcgtg aatatttccc cgacctgtcg
     1561 cagaaaacac tcaccagtgc ctttggcctg gtgcacag
//
LOCUS       DATIQF010000459         1571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_144644,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000459 DATIQF010000000
VERSION     DATIQF010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1571
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144644"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(309..1118)
                     /locus_tag="VLL95_07570"
     CDS             complement(309..1118)
                     /locus_tag="VLL95_07570"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSR38758.1"
                     /translation="MTQGLVYKPENFDPKKKYPMIAYFYETLSDGLYSYSPPAPTPSR
                     LNIPFFVSRGYVVLAPDIHYRKGEPGHSAYDYIVSGARHLVKLGYVDSTKMGLQGQSW
                     GGYQTVQLITMTNLFAAAWAGAPVANMTSAYGGIRWESGLNRQFQYEKTQSRIGATLW
                     ERQDLYLKNSPLFHLPKNKTPLVIMHNDADGAVPWYQGIELFTAMRRLNQKVWLLQYN
                     NEAHNLVERRNRKDIQVREQQFFDWLLKGEKPAKWLTEGVPATMKGREYGL"
     gene            complement(1149..>1571)
                     /locus_tag="VLL95_07575"
     CDS             complement(1149..>1571)
                     /locus_tag="VLL95_07575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38759.1"
                     /translation="IWRLDPAGVNAPVSITGGAGRQSGVTIRWQNLSRDQNYVMFGED
                     YLFTLFNNKNKTAGIKWVEFGKPFGGVEGLQQTHPTRLANFVKAKQANVLRYSTEDYA
                     HTPGIRVGQVSDVLQQPLGVKSLYEPNPQQSQYLWGTA"
BASE COUNT          343 a          424 c          394 g          410 t
ORIGIN      
        1 cgtggcacaa ttgcaggcaa cggaaggggt cttgaaattc ttcctgttca gcctgctttc
       61 cattgtagtt gcgcacctgt cttatcgctt cattgagcaa aagctgttgt cattaaagga
      121 caagtggttt gcataaatca tacagggttt aaagctgtgc tgcatatacg ccgtgtctcc
      181 caaagcgaag acacggctaa aacggcaaag cggagacacg gctggaacga aaatggtttg
      241 cataaaaaaa cagggaacgg ttttgcaacc attccctgtg tactttattt catcaaaaca
      301 ttctgctgtt acaaaccgta ttccctgcct ttcatcgtag caggcactcc ttccgtcagc
      361 cacttggcgg gcttctctcc tttcagcagc cagtcaaaga actgttgttc ccttacctgg
      421 atgtctttcc ggttgcggcg ctccaccagg ttgtgcgctt cgttgttgta ttgcagcaac
      481 cacactttct ggttcagcct gcgcatggcg gtgaacaact cgatgccctg gtaccagggt
      541 accgcgccat ccgcgtcgtt gtgcatgatc accagtggcg ttttgttttt aggcaaatgg
      601 aacaacggtg aattcttcag gtacaagtcc tggcgctccc acaaagtggc gccaatgcgg
      661 ctctgtgttt tttcatactg gaactggcgg ttcaagccac tctcccagcg gatgccacca
      721 taagcgctgg tcatattggc tacaggggca ccagcccacg ccgcagcaaa caggttggtc
      781 atggtgatga gctgcacggt ttgatagccg ccccagctct ggccctgcaa tcccattttg
      841 gtgctgtcca cgtaaccgag tttcaccagg tggcgggcgc cgctcacaat gtaatcataa
      901 gcactatgac ccggctcgcc tttgcggtag tgaatatcgg gcgccagtac cacgtagccg
      961 cggctcacaa agaatggaat gttcaaacgg ctgggtgttg gtgccggcgg gctatagctg
     1021 tacaatccat cgctcagcgt ttcgtagaag taagcgatca tcgggtactt cttcttcgga
     1081 tcaaagttct caggcttgta cacgaggccc tgtgtcatct taccatcata tgccttccat
     1141 taaatcaact aggcagtgcc ccacaggtac tggctttgtt gtgggttagg ctcatacaaa
     1201 ctttttacac ccaatggctg ctgcaacaca tcagacacct gccctacccg gatgccgggc
     1261 gtatgcgcat aatcttcggt gctgtatctg agcacattgg cctgcttcgc ttttacaaag
     1321 ttggccaggc gggtgggatg ggtttgctgc aatccttcca cgccaccaaa gggttttccg
     1381 aattccaccc acttgatccc ggctgttttg tttttgttgt tgaaaagggt aaagaggtag
     1441 tcttcgccaa acatcacata gttctgatcg cggctgagat tctgccatcg aatggtaacg
     1501 cctgattggc gtccggcacc ccctgtgatg ctcaccggtg cattcacacc agcaggatcg
     1561 agtcgccaga t
//
LOCUS       DATIQF010000460         3071 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_266303,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000460 DATIQF010000000
VERSION     DATIQF010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3071
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266303"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..644)
                     /locus_tag="VLL95_07580"
     CDS             complement(<1..644)
                     /locus_tag="VLL95_07580"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR38760.1"
                     /translation="MSEQVIKVGMADDHVLIRQGLATMINNLASCKVIWQASNGLEVK
                     ELIAKEVPDVMLLDIRMPEMNGFETCAWLTRHHKSVKVLALSMMDEENAVIKMLKSGT
                     KGYLLKDSEPMELANAIRTVNDQGFYFNEMVTGKLLHSILQENLDVGEREEDRFQLSA
                     REKEFLQLVCTEYTYREIADIMKMSPRTIDGYRDVLFERLGVKSRVGLVIYAIR"
     gene            complement(641..1405)
                     /locus_tag="VLL95_07585"
     CDS             complement(641..1405)
                     /locus_tag="VLL95_07585"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSR38761.1"
                     /translation="METNQEIRVLVFTMIGLALVIGIFVMTVFLVFLRKRQQHLVKMA
                     ELQQEMLRSQIEIQEQTFTAVSQELHDNIGQRLGLIKLQLNTLGMSTGSPEQVSEIKE
                     QVTQTITDVRAISKNLHPERIAMQGLIDSVQNAVDALNATHQWKARLEVMGEAVMAKK
                     ESEVILFRMVQELMNNAVKHSGGNEFSVMLRFTEKDLTITCADNGKGLPPQATHSIGF
                     TSLKNRASLLKGSISFEAHTPNGLKVIIAVPKSAIV"
     gene            complement(1363..2037)
                     /locus_tag="VLL95_07590"
     CDS             complement(1363..2037)
                     /locus_tag="VLL95_07590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38762.1"
                     /translation="MLLSVLGIIALVIIGIATVIGIVIAPKISSLPYKLLMVYMIITF
                     INSTALNITGSMQIRNHFLVNIYIYLRFPMLAWIYYLLFKWQKRKGYYLSVLLWLITP
                     FFLIYGLLDLGGNQLHTPYVVAGSAIMILVILLFFYNMFASTEILTPLTYPFFWTSLG
                     LFFFFLLLMPSRGIINFLITSNTVAARQASIILQAYNCILYSLISLDFLIAWKQTRKS
                     ASLSLQ"
     gene            complement(2065..2433)
                     /locus_tag="VLL95_07595"
     CDS             complement(2065..2433)
                     /locus_tag="VLL95_07595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38763.1"
                     /translation="MSNNGGKKIGIDRAKIMIANYKNKADANATQSVWFSAETLAEAL
                     GLSVPAGHAISGLRFHFAAYNPSMNDAGEAAKNQQTTLVFTPTVQQGSRQVSLALEAD
                     PGTADDGEVYNEGAICPPVC"
     gene            complement(2562..>3071)
                     /locus_tag="VLL95_07600"
     CDS             complement(2562..>3071)
                     /locus_tag="VLL95_07600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38764.1"
                     /translation="KMGIRNHFIANIYQYLRFPLLAWIYFQLFHWQHQKGFHLPVLLW
                     VITPIMLIYCMITLGFDKLHTPYVLAGSSMMVLIILLFFYGMFASDVLITPLKYPFFW
                     TSLGLFFFFLLLMITRGIINTLISNMQVAKIAAIVLQAYNCILYSLISIDFLIAWKRA
                     RQEQAITTQ"
BASE COUNT          826 a          730 c          717 g          798 t
ORIGIN      
        1 ttgcggatgg catagatcac caggcccacc ctcgacttta cacccagcct ttcgaaaagt
       61 acatcgcggt agccatcgat agtgcggggg ctcattttca tgatgtccgc aatttcccga
      121 taggtgtatt cggtacaaac cagctgcagg aattcttttt cccgggcact cagctgaaaa
      181 cgatcctcct cccgctcgcc tacgtcgagg ttctcctgca aaatgctgtg caacagcttg
      241 ccggttacca tttcattgaa ataaaaccct tgatcgttta ccgtccggat ggcattcgcc
      301 agttccatgg gttccgagtc tttgagcaaa taacccttgg tgcccgattt cagcattttg
      361 atcaccgcgt tttcttcatc catcatgctc agcgccagca ccttcaccga tttatgatgg
      421 cgggtgagcc aggcgcaggt ctcaaaacca ttcatctccg gcatgcggat atccaacagc
      481 atcacgtcgg gcacttcttt ggcaatgagt tccttcacct ccagcccgtt ggaggcctgc
      541 cagatgactt tgcaggaagc cagattgttg atcatggtgg ccaatccctg ccggatcaaa
      601 acatggtcgt cggccatgcc tactttgata acctgttcac tcatacgatg gcacttttag
      661 gtacggctat tattactttc aaaccgttgg gggtgtgcgc ctcaaacgag atactgccct
      721 tcagcaggga agccctgttc ttcaggctgg taaatccgat gctatgggtg gcttggggcg
      781 gcagcccttt gccattatca gcacatgtga tggtaaggtc tttttcggtg aagcgcaaca
      841 ttacagaaaa ttcattaccg ccggaatgtt ttactgcatt gttcatcaat tcctgcacca
      901 tgcggaacaa aatgacctcg gattcctttt tggccattac agcttcaccc attacctcca
      961 gccgggcctt ccattgatgg gtagcgttga gggcgtcaac ggcattttgt accgaatcaa
     1021 tgaggccctg catggcaatg cgctccgggt gcaggttctt gctgatggcc cgcacgtcgg
     1081 tgatggtttg cgtcacctgc tcctttatct cactcacttg ttcaggacta ccggtgctca
     1141 ttcccagcgt attcagttgc agtttgatga gccccagccg ctgcccgata ttgtcgtgca
     1201 attcctggct tacggccgta aaagtttgct cctgtatctc aatctgtgaa cgcagcattt
     1261 cctgctgcag ctcggccatt tttaccaaat gctgctgccg cttgcgcaga aagaccagga
     1321 acactgtcat cacaaaaatg ccgatgacca atgccaggcc aatcattgta aagacaagga
     1381 cgcggatttc ctggtttgtt tccatgcaat aagaaaatct aagctgatga ggctgtacaa
     1441 aatacaattg taggcctgca aaatgataga tgcctgtctg gcagccactg tgttagaggt
     1501 gatcaaaaaa ttaataatgc cacgggaagg catgagcaaa agaaaaaaga aaaacaagcc
     1561 taaactggtc cagaaaaaag gatacgtcaa tggcgtaaga atttctgtgc tggcaaacat
     1621 gttgtaaaaa aacagcagga tgaccaaaat cattatcgca gatcccgcca ccacgtatgg
     1681 cgtatgtagt tggttccccc ccaaatcaag caggccatag atcaggaaaa atggtgtgat
     1741 cagccacagc aataccgaca aataataccc ctttcgtttt tgccacttga acaagagata
     1801 ataaatccag gcaagcattg gaaaccttag atagatataa atgttcacca ggaaatggtt
     1861 cctgatttgc atcgatccgg taatgttaag agcagtggaa ttgataaatg tgatgatcat
     1921 ataaaccatc agcaatttat agggcagcga tgaaattttg ggagcaatga caatgccaat
     1981 gacggtggca atgccaatga tgaccaaggc aataatacct aataccgata gcaacatgag
     2041 acaaacctat tggttaattt gaggttagca cacaggcgga catatggccc cttcattgta
     2101 cacttctcca tcatcagcag tgcccggatc tgcttccaat gccaggctca cctggcgact
     2161 tccctgctgg acagtaggcg taaacaccaa cgttgtctgt tggttcttcg cggcttcgcc
     2221 ggcatcattc atcgaaggat tgtaagcggc aaaatgaaaa cgcaagccgc tgatggcatg
     2281 gccagcggga accgatagtc ccagtgcttc agccaatgtt tcggccgaga accaaaccga
     2341 ttgggtagca ttcgcgtctg ctttgttttt gtaattggcg atcattattt tggcccgatc
     2401 gatgccgatc tttttgccgc cgttgttgct catacaaatg gtttgaagtg attatgcagg
     2461 atgaagcgca atttaatggt tggtcagtaa tgttaccagc ctgttgacca atcgctttgg
     2521 tatttgtttt acaatgaaaa tagaaggggc agttactttt tttattgagt cgttatggcc
     2581 tgttcttggc gggcacgctt ccatgcaata agaaagtcta tactgatgag gctgtacaaa
     2641 atacaattat aggcctgcaa aacgatcgct gcaatctttg ccacctgcat gttggaaata
     2701 agggtattta taattcccct ggtgatcatt agtaacagga aaaagaaaaa taaacccagg
     2761 ctggtccaga aaaacgggta cttcaacggc gtgatcagta catcgctggc aaacatgcca
     2821 tagaaaaaca acagtattat taagaccatc atagatgagc cggccagcac gtagggcgtg
     2881 tgcagtttgt caaatcctaa tgtgatcatg cagtagatca gcatgatcgg agtaatgacc
     2941 caaagcagaa cagggaggtg gaagcctttt tgatgttgcc aatggaatag ctgaaaataa
     3001 atccaggcca acagcggaaa tcgcaggtat tgataaatgt tggcaatgaa atgatttctg
     3061 atgcccattt t
//
LOCUS       DATIQF010000461         3133 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_281203,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000461 DATIQF010000000
VERSION     DATIQF010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3133
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281203"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1024
                     /locus_tag="VLL95_07605"
     CDS             <1..1024
                     /locus_tag="VLL95_07605"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSR38765.1"
                     /translation="KKAVAEFAITTDASPHIKATVGFEAKKRNGINVAAFINNNALQT
                     IVLGAHLDHLGYGEDANSRYTGAAAIHNGADDNASGTASVLELGRILKDRKDIPYNIL
                     LLHFSGEELGLYGSKYFTDNPLIDMKQVNYMINLDMVGRLNDTSKVLTIGGIGTSPAW
                     GKILQLDQQKDFSVKIDSSGTGPSDHTSFYRKDLPVLFFFTGLHTDYHKPSDDAQLIN
                     YAGTTSIVNYIVRIVNNTPANEKLAFTKTREQQMGTGRFKVSIGIMPDYTFSGQGVKA
                     DGVIDGRPAQKAGVVAGDVIIQLGEHLITSVETYMQALNRFEKGQSSTVTVKRGKDIK
                     EFPITF"
     gene            1036..1473
                     /locus_tag="VLL95_07610"
     CDS             1036..1473
                     /locus_tag="VLL95_07610"
                     /inference="COORDINATES: protein motif:HMM:NF033205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IPExxxVDY family protein"
                     /protein_id="HSR38766.1"
                     /translation="MAKLLLDNDLIAEEYFSNAQLLGIQCPVEPHKFIWLINKHFGFD
                     FRYQAGSEIELNKKGRKFYFPVFSFDESHLSVQHLIYTNQFDGEYLLPELKFTDFLWL
                     VRSDSNDTAFIQLLANEIRQVSTVQLVTMLSNDKIKNKQHLIL"
     gene            1503..1733
                     /locus_tag="VLL95_07615"
     CDS             1503..1733
                     /locus_tag="VLL95_07615"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: protein motif:HMM:NF013494.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HSR38767.1"
                     /translation="MWQEIDNQLYCKFQFANFSEAFAFMTRVALEAEKMDHHPKWTNV
                     WNTVEIWLSTHDAGNVVTDKDHALARRIDALL"
     gene            complement(1743..>3133)
                     /locus_tag="VLL95_07620"
     CDS             complement(1743..>3133)
                     /locus_tag="VLL95_07620"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HSR38768.1"
                     /translation="SLRSAVRTGLQTGLPFAALLATIIPVFGMSWYFDTENWAAGIWD
                     GWSAARTDTWRKAMVTSIETQPGANSFKLQPPGVTDSSDFSFVVLGDPGEGDASQYIL
                     HNQLVRVCEKPDVKFMVISSDVVYPDGAMKDYEKNFWTPMNGITKPVYAIPGNHDWYD
                     ALDGFAATFYSADAARKSMKARRNVDLKITSTTDRAIEDMINKAAFYRNMYKVPTGFQ
                     SSPFFQIQTKDFVFITIETGVLRRIDETQMQWLKAVLEASKGKFIFALLGHPFYAIGE
                     YQGSMNPDFEALHAMLRQYNARIIMAGDTHDLEYYQEPVSDTDSSKVIHHFVNGGGGA
                     YLSLGAALKAPGDMPEKVWAHYPAREPLVQKIESQNNWVKKPFWKWTKLYNGWPFSAE
                     WLSAAFDYNVAPFFQSFMEVKVEPSKRQIRLLAYSQSGPLTWQELEKSGGVKPEGAGD
                     NDQVEWIVKMDK"
BASE COUNT          804 a          801 c          770 g          758 t
ORIGIN      
        1 taaaaaagcg gtggctgaat tcgccattac taccgacgcc agtccacaca taaaagcgac
       61 tgtagggttt gaggcaaaaa aacgcaatgg catcaatgtg gcagcgttca tcaataacaa
      121 cgccctccaa accattgtac tgggtgcaca cctcgatcat cttggttatg gtgaagatgc
      181 caacagccgg tataccgggg cagcagccat ccacaacggc gccgatgaca atgccagcgg
      241 tacagcctca gtgctggaac tgggccgcat cctgaaagac aggaaagata ttccttacaa
      301 tattttgctg ctgcatttca gcggtgaaga gctgggactg tatggcagca agtatttcac
      361 cgacaacccg ctcatcgaca tgaagcaggt gaactacatg atcaacctcg acatggtggg
      421 ccgcctgaac gataccagca aggtgctgac cattggtggc attggcactt cgcctgcctg
      481 gggcaagatc ctccaactcg accagcaaaa agatttcagc gtgaagatcg acagcagtgg
      541 aacgggcccc agcgaccata cttcattcta tcgcaaagac ctgcccgtgt tgtttttctt
      601 caccggtctg cataccgatt accacaaacc cagcgacgac gcccagttga tcaactatgc
      661 tggcaccacc agtattgtca attacattgt gcgcattgta aacaatacac cggccaacga
      721 aaaactggcc tttaccaaaa cccgggagca gcaaatgggc accggccgct tcaaagtgtc
      781 gataggcatt atgcctgact acaccttcag cgggcagggc gtgaaggccg atggcgtgat
      841 agacggacgt cctgcgcaaa aggcgggagt ggttgccggg gatgtgatca ttcaactcgg
      901 tgagcacctc attaccagtg tagaaacgta catgcaggcg ctgaacaggt ttgaaaaagg
      961 acagagctct accgtaacgg tgaagcgggg aaaagacatc aaagaatttc ccatcacttt
     1021 ctgatcttca aattaatggc caagctatta ttagacaatg acctgatagc ggaagaatac
     1081 ttttccaatg cgcagttgct gggcattcag tgcccggtag aaccgcacaa gttcatatgg
     1141 ctcatcaaca agcattttgg atttgacttc cgctaccagg ccggctctga aatagaactg
     1201 aacaagaaag gccgaaaatt ttacttcccc gttttcagct ttgatgagtc gcacctctct
     1261 gtgcaacacc tcatatacac caaccagttc gatggcgaat acctgttgcc tgaattaaag
     1321 ttcaccgact ttttgtggct ggtacgcagc gatagcaacg atacggcttt catccaactg
     1381 ctggccaacg agatcaggca ggtaagtacg gtgcaattgg taaccatgct gtcgaatgac
     1441 aaaatcaaaa acaagcaaca cctgattcta taggtgatca ttttcaacta aaatccagga
     1501 tcatgtggca ggaaatcgac aaccagttgt attgcaaatt tcaattcgcc aatttcagcg
     1561 aagctttcgc tttcatgacc cgcgttgcgt tggaagctga aaagatggac caccatccga
     1621 aatggacgaa tgtgtggaat acggttgaaa tttggctgag cacacacgat gccggcaatg
     1681 tggttacaga caaagaccat gcgttggccc gccgcattga tgcactactg tagtagcgtc
     1741 atttacttat ccattttcac tatccattcc acctggtcat tatcgccggc accttccggt
     1801 tttacgccac cgcttttttc cagttcctgc caggtaagcg gcccgctttg tgaatacgcc
     1861 agcaatcgta tttgtcgttt cgacggctcc acttttactt ccatgaagct ttggaaaaat
     1921 ggcgctacgt tgtaatcaaa tgctgctgaa agccactccg cactaaaggg ccagccgttg
     1981 tacaacttgg tccatttcca gaaaggtttt ttcacccagt tgttttggct ttctattttt
     2041 tgcaccaggg gttcacgggc cgggtaatgc gcccacactt tttcgggcat gtcgccgggc
     2101 gccttcaggg cagcacccag gctcaggtag gcaccgccgc cgccgttcac aaaatgatgt
     2161 atcactttgc tgctgtcggt atcgcttacc ggctcctggt agtattcaag gtcatgcgtg
     2221 tcgccggcca tgatgatgcg ggcattgtat tgccgtagca tggcatgcag tgcttcgaaa
     2281 tcaggattca tgctgccctg gtattcgcca atggcgtaga aaggatgtcc gagcaaagca
     2341 aaaatgaatt tgcctttgga ggcctccagc acggctttca gccattgcat ttgtgtttca
     2401 tcaatccgcc gaagcacgcc ggtttcgatg gtgatgaaaa caaaatcttt ggtttgtatt
     2461 tgaaagaagg gtgaagattg aaaaccggta ggtactttgt acatgtttct gtaaaaggcc
     2521 gctttgttga tcatgtcctc aattgcccgg tcggtggtgg aagtaatttt cagatcgaca
     2581 ttgcggcgtg ccttcatgga tttgcgagcc gcatcggcgc tgtaaaaagt ggcggcgaat
     2641 ccatccaatg catcgtacca gtcatggttg ccgggaatgg cgtacaccgg tttggtaatg
     2701 ccattcatcg gtgtccagaa gttcttttca taatctttca tggcgccgtc ggggtaaacc
     2761 acgtcagaag aaatgaccat gaattttaca tcgggctttt cgcataccct caccagttga
     2821 ttgtgcagaa tgtattgcga agcatcccct tcacccggat cgcccagcac cacaaatgaa
     2881 aaatcactgc tgtcggttac accgggtggc tgcagtttga aactgttggc accgggttgc
     2941 gtttctatgg atgttaccat ggctttgcgc caggtatcgg tgcgggccgc cgaccagcca
     3001 tcccaaatac cagccgccca gttctccgta tcgaagtacc agctcatgcc aaacaccgga
     3061 atgatggttg ccagcaaagc ggcaaatggc aaacctgttt gcagaccggt acgcacggca
     3121 gaacgcagcg aat
//
LOCUS       DATIQF010000462         3316 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_281222,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000462 DATIQF010000000
VERSION     DATIQF010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3316
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281222"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..515)
                     /locus_tag="VLL95_07625"
     CDS             complement(<1..515)
                     /locus_tag="VLL95_07625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38769.1"
                     /translation="MLTFRFSVFMISLASTPGRTAQTAHGEWLFFSGYSYLGIQKEPG
                     IASEAEKAFRQYGWLYPSARISNTPLQLYEEVETALSQLTQLTETVLMGNGLMAGRAA
                     ISQIEAGSKVLVGPACHPAIEAGEKYKGSFDEWASHCLEEIHQQDDEHPIYIVSDAVN
                     PLTAEVYDFSF"
     gene            649..1725
                     /locus_tag="VLL95_07630"
     CDS             649..1725
                     /locus_tag="VLL95_07630"
                     /inference="COORDINATES: protein motif:HMM:NF014653.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ldh family oxidoreductase"
                     /protein_id="HSR38770.1"
                     /translation="METTFAYQELYQYTCQTFLRMGCSDADAALATKVLLSADLRGID
                     SHGIARLSGYWRLYEAGRINPKAEMRLVHETPSTATVDGDKGLGLVVAPKAMQIAIDK
                     AIAVGSGWVSVKNSNHFGIAGYHAMMALQHDMIGWAMTNASALVTPTFSKEKMLGTNP
                     ICVAIPAGEEPAFVADFATTTAANGKLEILQRKNAEAPLGWVQDAEGLPTTDANALKK
                     GGALLPLGGDREHGSHKGYALGSIVDIFSAVLSGASYGPWAPPFPAYVPMPENMPGEG
                     LGHFLGAMRIDGFRPANEFKEHMDNWIRRFHNAVPADPAQPVLVPGDPEREIEAIRKE
                     NGIPLVDAVVNDLKELGKKTGISL"
     gene            1851..3173
                     /locus_tag="VLL95_07635"
     CDS             1851..3173
                     /locus_tag="VLL95_07635"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HSR38771.1"
                     /translation="MKIMKFGGTSVGRPERMAQVAQLITADSESKIVVLSALSGTTNA
                     LVEISNALAEYKRDEAKQLIDKLEAHYQAFISELVKTPDAYDKAKAIVAEHFEFLNII
                     LRISFSDALNKDILAQGEFLSTKLFCVYLGENGIDHALLPALEFMSIDANDEPQVPAI
                     SAKLKQQLAQQGDKKLFITQGYICRNARGEVDNLKRGGSDYSASLIAAAINASVCEIW
                     TDIDGMHNNDPRVCKKTNPIEQLSFEEAAELAYFGAKILHPASIWPAQHYKIPVKLLN
                     TMEPQAKGTIIVEEAGSKGVKAVAAKDGIYAINIRSSRMLLAYGFLRKIFEVFEKYRT
                     SIDMITTSEVAVSVTIDNASNLKEILRELEPFGTITVEENQTIVSVVGNEIAETKDVL
                     VKLFDSVKDIPVRMVSYGGSRHNVSLLVPSASKTATLQALNSGLFGLE"
BASE COUNT          855 a          839 c          878 g          744 t
ORIGIN      
        1 aaaaacgaga aatcgtacac ttcggcagta agaggattta cagcatccga aacgatataa
       61 atgggatgct catcatcctg ttgatgaatt tcttccaggc aatgactggc ccattcgtca
      121 aagctgcctt tgtatttttc gccggcttca atggccgggt ggcaggcggg acctaccaat
      181 actttgctgc ctgcctctat ttggctgatg gctgctcttc ctgccatcaa accattgccc
      241 atcaacacgg tttcggtaag ttgggtgagt tggctgaggg ccgtttccac ttcctcatac
      301 aactgcaagg gcgtattgga aatgcgggca ctggggtata accagccata ctgcctgaaa
      361 gccttttccg cttcggacgc tatgccgggt tctttttgga tgccgaggta agaatatccc
      421 gagaaaaaaa gccattcgcc atgcgctgtc tgggcagtgc gtcccggggt agatgccagt
      481 gatatcatga atacagaaaa acgaaaagta agcaaaaaca ggttgcctga aacattcccg
      541 ctgtgaggca aggtccatgt tggttctaac gaatgtggtc acctcatttt tccaagtcct
      601 tgctttttca caggcatgcg ttcgggcact actcacttac tttgccgcat ggaaacaaca
      661 tttgcctacc aggaattata ccaatatacc tgccagacat ttttgcgcat ggggtgttcc
      721 gatgcggatg ccgcattggc gacgaaagtg ttgctgagcg ccgatctgcg gggcatcgac
      781 agccacggga ttgcacgcct gagcggctat tggcgtttgt atgaagccgg acgcatcaac
      841 cccaaagccg aaatgcgcct ggtgcacgaa acgcccagca ccgccactgt ggatggcgac
      901 aaaggcctcg ggctggtggt ggcacccaag gccatgcaaa tagccattga caaagccatc
      961 gccgtgggaa gtggatgggt tagtgtaaaa aacagcaacc acttcggcat tgcaggttat
     1021 catgccatga tggctttgca gcacgacatg attggttggg ccatgacgaa tgccagtgcc
     1081 ttggttacac ctactttttc caaggaaaaa atgctgggga ccaaccccat ttgtgtggcc
     1141 attccggcgg gtgaagagcc tgcgtttgtg gccgattttg ccaccaccac tgctgccaat
     1201 ggcaaactgg aaatattgca acgcaaaaac gcggaggcgc ctttgggatg ggtgcaggat
     1261 gcggaaggct tacccaccac cgatgccaat gcgttgaaga agggtggtgc tttgttgcct
     1321 ttgggaggtg accgcgaaca tggcagtcac aaaggctatg ccttgggaag catcgttgat
     1381 attttcagtg cggtgttgag tggtgccagc tatggcccgt gggccccgcc atttcctgcc
     1441 tatgtgccca tgccagaaaa tatgccgggc gaagggctcg ggcatttcct gggggccatg
     1501 cgcatcgatg gattccgtcc ggccaacgaa ttcaaggaac acatggacaa ctggatcagg
     1561 cgtttccaca acgcggtgcc ggccgatccg gcgcaaccgg tgctggtgcc gggcgatccg
     1621 gaaagggaaa tagaagccat tcgaaaagaa aatggcatcc ccctggtgga tgcggttgtc
     1681 aatgatttaa aagaactggg caaaaagaca ggaataagcc tttaattttg ccacccgatt
     1741 gccttgcctg tagcctgatg gctacaggca tttcattagg cacctattag atcaccaaac
     1801 aagcattgaa aagcattccg cagcaagcgg aacaaaaaag gatccaggtt atgaaaatca
     1861 tgaagtttgg cggcaccagt gttggtcgcc cggagcgtat ggcacaagtt gcgcagttga
     1921 ttactgccga cagtgagtcc aaaattgttg tactgagcgc attgagtgga accactaatg
     1981 ccctggtaga aatcagcaac gcactggcgg aatataaacg ggacgaagcc aaacaactga
     2041 tcgataaact ggaagcgcat taccaggctt tcatcagcga gctggtgaaa acaccggacg
     2101 cttatgacaa agcgaaagcc atcgtggctg agcattttga attcctcaac atcattttgc
     2161 gcatatcctt cagcgatgcc ctgaacaaag acatcctggc gcagggcgaa tttctgagca
     2221 ccaaattgtt ttgcgtatac ctcggcgaaa atggcattga ccatgcgttg ctgcctgccc
     2281 tcgaattcat gagtattgat gccaacgatg agccacaggt gcctgccatc agtgccaaac
     2341 tgaagcagca actggcgcag cagggcgata aaaaattgtt catcacccaa ggctatatct
     2401 gccgcaatgc ccgtggcgag gtagacaacc tgaagcgtgg tggcagcgat tacagtgcct
     2461 cgctgatcgc cgcggccatc aatgcatcgg tttgcgaaat atggaccgac attgacggca
     2521 tgcacaacaa cgatccccgt gtttgcaaaa agacaaaccc gattgaacaa ctcagctttg
     2581 aagaagcggc tgaattggcc tacttcggcg ccaagatcct gcacccggcg tccatttggc
     2641 cggcacagca ttacaagatc ccggtgaaac tgctcaacac catggagcca caagccaagg
     2701 gtaccattat cgtggaagag gcgggcagca aaggagtgaa ggcggtagct gccaaggacg
     2761 gcatttacgc catcaatatc cgcagcagcc gcatgttgct ggcttacggt ttcctgcgca
     2821 agatcttcga agtgtttgaa aagtatcgca ccagtatcga tatgatcacc acttctgagg
     2881 tggctgtttc ggttaccatc gacaacgcgt cgaatctcaa ggaaatactc cgtgagctcg
     2941 agcccttcgg taccatcacc gttgaagaga accagaccat cgtttctgta gtgggcaatg
     3001 aaattgcgga aaccaaagac gtactggtta aactctttga ttccgtaaaa gacataccgg
     3061 tgcgcatggt aagctatggt ggcagccgtc acaacgttag cctgctagta ccatcagcca
     3121 gcaaaaccgc tacgctgcag gcactcaact ccggtttgtt cggactggag tgaggcacca
     3181 accattggtg aaacagaatc ctgcaaccat tcataccggc cagtattcat gacagcagcg
     3241 cttcatgaat gctggctttt tttattgtgc aaccgatact ggcgaagccg taaacttgca
     3301 ggcaatcatc atttgt
//
LOCUS       DATIQF010000463         3631 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_220581,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000463 DATIQF010000000
VERSION     DATIQF010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3631
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220581"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..489)
                     /locus_tag="VLL95_07640"
     CDS             complement(<1..489)
                     /locus_tag="VLL95_07640"
                     /inference="COORDINATES: protein motif:HMM:NF014924.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008810 - cellulase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase N-terminal Ig-like domain-containing
                     protein"
                     /protein_id="HSR38772.1"
                     /translation="MKKTFRFGLIMIFLLTTTGYMKTGFNRKKVVLFNQVGYICHAPK
                     MLLVSPDVNQVRFLNELGSEILQVIPSAAEYWEPSGDSVRKVNFSSITLPGKYKLFAD
                     GEYLNVEVSVAEKPYHDLSVCVMKSFYLQRMGMPIAEEYAGKWARAAGHPDTAVVIHP
                     SAA"
     gene            complement(547..2976)
                     /locus_tag="VLL95_07645"
     CDS             complement(547..2976)
                     /locus_tag="VLL95_07645"
                     /inference="COORDINATES: protein motif:HMM:NF028476.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38773.1"
                     /translation="MKYGYFDDANREYVITHPATLWPWINYLGNEDFFSLISNTAGGY
                     SFYKDAKFRRLTRYRYNNVPMDNGGRYFYINDGGDVWNPGWKPTKSTLDSYECRHGMS
                     YTRIKSSRNGLAADLLFFVPLKSWCEIQQLTLTNTSSETKKFKLFSFVEWCLWNAEDD
                     QNNLQRNLSTGEVEIEGSTIFHKTEYKERRNHYAFYHVNAPVQGFDTDRESFMGLYNE
                     FSEPSAVMNGQPGNSVAHGWSPIASHYLEIELAPGEKRELVFILGYVENADDKKWAGK
                     NIINKTPASDLISQFNTSDKVAAAMRALGKYWDELLSRFILKSADEKLDRMVNIWNQY
                     QCMVTFNMSRSASFFEVGIGRGMGFRDSNQDLIGFVHQIPERAKERIIDIASTQFPDG
                     GAYHQYQPLTKRGNNAIGGNFNDDPLWLILSTAEYIKETGDMGILDEMVPFDNDATKA
                     KTHLEHLRLSFDHVINNLGPHGLPLIGRADWNDCLNLNCFSTNPNESFQTTENQSGGT
                     AESVMIAGLFVVYGNEYVELCKVIGKQEEAARARNHVNNMVSAIKLHGWDGQWYLRAY
                     DFFGNKVGSHENEEGKIFIESQGWCSMAAVGKEEGMVEKALDAVKEHLDCEYGIVLNH
                     PAFTKYVIEYGEISTYPAGYKENAGIFCHNNPWIMIGETVIGRGNRAWEYYQKICPAY
                     LEDISDLHKTEPYVYSQMIAGKDAFKPGEAKNSWLTGTAAWNYYAITRYILGVRPQYD
                     GLLIDPCIPDSWEGFEVTRKWRGSTYHIKVHNPSGICKGVIELKLNGAVIEGNTIPLL
                     QGVHDVEVLMG"
     gene            complement(3036..>3631)
                     /locus_tag="VLL95_07650"
     CDS             complement(3036..>3631)
                     /locus_tag="VLL95_07650"
                     /inference="COORDINATES: protein motif:HMM:NF024742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR38774.1"
                     /translation="HYLHNALLSGSFLVALMLASIAGAMITGPLGKKWGKRNLFIYAL
                     IFSAFVNALFIFCGPNDITSIFAIGVVSEFAAAIFPTLFFAMLGDAADYSEFKNGRRA
                     TGLVYSAGSFATKFGGGLAGAIIGLVLGAYHYNGQDSHSIEGAIPGIKMLMSWVPSII
                     ALIAAAVMALYPLNQQKMDEINAELDARRANESNRIV"
BASE COUNT          916 a          850 c          796 g         1069 t
ORIGIN      
        1 tgctgcagaa ggatgaatga ctactgcagt atccgggtgt cccgctgctc ttgcccattt
       61 tcctgcatat tcttctgcaa tgggcatgcc catgcgttgc aggtaaaagg atttcattac
      121 acaaacgctc aggtcgtggt aaggcttttc tgcaaccgac acttcaacgt ttaggtattc
      181 gccatcggca aaaagtttgt atttgccagg cagggtaatc gaggaaaaat tgacctttct
      241 gacagagtct cccgaaggct cccaatattc ggcagcagag ggtattactt gaagtatttc
      301 gctacccaat tcattcaaga atcgaacttg attcacatca ggggatacca gtagcatttt
      361 gggggcatgg cagatatatc ccacctggtt aaacaaaaca acctttttgc ggttgaaacc
      421 tgttttcatg taaccagttg tggtcaatag aaaaatcata atgagtccaa agcggaatgt
      481 ctttttcatg gcgcagttga atttcgggat atctgatttt agttgccctc cggaagtcgt
      541 tttctcttag cccattaaca cttccacatc atgcacgcct tgcaatagag ggatagtatt
      601 cccttctatt actgcgccgt tcaatttcaa ttcgattaca cctttacata tgcctgaagg
      661 gttatgaact ttgatatgat aggtactccc tctccacttt cgggtcactt caaatccttc
      721 ccaggaatca ggaatgcagg ggtcaataag caacccatca tactgcggac gcacacccag
      781 aatgtaccgt gttattgcat aataattcca ggcagcagtg ccagttagcc aggagttttt
      841 cgcttcacca ggtttgaatg catctttgcc agcaatcatt tgggagtaca cataaggctc
      901 cgtcttgtga agatcgctga tgtcttccag gtatgccggg catatcttct ggtaatactc
      961 ccaggccctg ttgcctcggc caattacggt ttcgccaatc atgatccagg gattgttgtg
     1021 gcagaatatt ccggcatttt ctttgtaacc tgcaggatag gtagagattt ctccgtattc
     1081 aattacatac tttgtgaatg ccggatggtt cagcacgatg ccatactcgc agtcgagatg
     1141 ctctttcact gcatccagtg ctttctccac catgccttct tcttttccaa ctgctgccat
     1201 tgaacaccat ccctggcttt caataaagat cttgccttct tcgttttcat gactgcccac
     1261 cttgttcccg aaaaaatcat atgccctcag gtaccattgt ccatcccatc catgcagttt
     1321 gatggcagaa accatattgt tcacatgatt ccgggctcgt gctgcttcct cctgtttgcc
     1381 tatcactttg cacaattcaa catattcgtt gccgtataca acgaacaacc cggctatcat
     1441 aactgactct gcagtaccgc cactttggtt ttcggtagtt tggaaggatt cattaggatt
     1501 ggtggaaaaa caattcaggt tgagacagtc attccagtct gccctgccaa tcaaaggaag
     1561 tccatgtggc ccgaggttat tgatcacatg gtcaaagctt aatcgcaagt gttcgaggtg
     1621 ggtttttgct ttggtggcat cattatcaaa tggtaccatt tcatcaagga tgcccatatc
     1681 accagtttct ttgatgtact ccgcggttga aagaatgagc cacaaggggt cgtcgttgaa
     1741 attgccgcca atggcattgt tgcctctttt ggtaaggggt tggtattgat gataagcacc
     1801 gccatccgga aactgcgtag aggctatgtc gataattcgt tctttcgctc tttcaggtat
     1861 ttggtgcaca aaaccgatca ggtcctggtt agaatccctg aagcccatgc ctctcccaat
     1921 gcccacttcg aaaaaggatg cggaacggct catattgaaa gtgaccatgc attgatattg
     1981 gttccagata ttaaccatgc gatccagctt ttcatcggca cttttcagga taaacctgct
     2041 cagcaattca tcccaatatt taccaagtgc tcgcatggct gcagccactt tatctgaagt
     2101 gttgaattgt gagatcaaat cggatgctgg tgttttgttt attatgttct tgccagccca
     2161 ttttttatca tccgcatttt caacataccc cagaataaat accagttcgc gtttttcgcc
     2221 aggtgccagt tcaatttcca ggtagtgcga ggcaatcggg ctccatccat gggctacgga
     2281 attgcccggt tgcccattca tcactgctga cggttcgcta aactcattgt acaaacccat
     2341 gaatgattcg cggtctgtat caaagccttg tactggtgca tttacatggt aaaaggcgta
     2401 atggtttctt ctttctttgt attcggtttt gtgaaagatg gtcgatcctt caatttccac
     2461 ttcacccgtg cttaagtttc gttgaagatt gttctgatca tcttcagcat tccagagaca
     2521 ccattcaacg aaggaaaaga gcttgaattt tttggtttca ctgctggtgt tggttagggt
     2581 gagttgttga atctcacacc atgattttag cggcacaaag aaaagcaaat cagctgccaa
     2641 accgttcctg ctactcttaa ttctggtata actcattcca tggcgacatt cgtagctgtc
     2701 cagtgttgat tttgtaggct tccaaccagg attccaaaca tcgccaccat cgttgatgta
     2761 aaaatacctg ccaccattat ccatgggtac attgttatat cgatagcggg tgagccttcg
     2821 gaatttggca tccttgtaaa atgaatatcc tcctgctgtg ttggaaataa ggctgaagaa
     2881 atcttcattt ccaaggtagt tgatccaagg ccagagggtg gcgggatggg tgatgacgta
     2941 ttcccgattc gcatcgtcaa aatatccgta tttcatctac tgttctgttt attgccatgc
     3001 ggcaggcagg tgaaaaagat tgtagttatg ttagtttaaa caatgcgatt gctttcatta
     3061 gcacggcgtg catccagctc agcattgatt tcatccatct tttgttgatt aagcgggtaa
     3121 agagccatca cagctgctgc tatcagggct attatggaag ggacccaact catgagcatt
     3181 tttatgcccg gtattgcacc ttctatactg tgcgagtcct gaccattgta gtgataggct
     3241 cccagcacca atccaataat tgcgcctgca agtccgccgc caaactttgt tgcaaatgag
     3301 ccggcagagt atacaaggcc cgttgcccgc ctgccgtttt tgaattctga ataatctgca
     3361 gcatctccca gcattgcaaa aaacagggtg gggaagatgg ctgctgcgaa ctcggaaaca
     3421 acaccgatgg cgaatatgga tgtgatgtcg ttagggccgc aaaagataaa tagagcattg
     3481 acgaaagctg aaaaaatcaa cgcataaatg aaaaggtttc gcttgcccca ttttttgccc
     3541 aatgggcctg ttatcattgc gccagcaata gaggccaaca tcaatgcaac caggaaagag
     3601 cctgaaagaa gtgcattgtg caaatagtgc g
//
LOCUS       DATIQF010000464         3557 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_266356,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000464 DATIQF010000000
VERSION     DATIQF010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3557
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266356"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1532)
                     /locus_tag="VLL95_07655"
     CDS             complement(<1..1532)
                     /locus_tag="VLL95_07655"
                     /inference="COORDINATES: protein motif:HMM:NF028199.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heparinase II/III family protein"
                     /protein_id="HSR38775.1"
                     /translation="MRYVVFRVTHELKKRTGWFEKQFPIQPIHQDYISLDAWRNAQIP
                     FFLQAMPGQAYASLPVKTIDPPACLEGRIKFFNAVDKALGLDYDWLTHPLTGYRYSNK
                     VHWSKVNDFSAEAGDIKYVWEKSRFAYLYEVIRYDAQHDTDHSEWVFNEILSWINANP
                     VNAGPNYKCSQEMSLRLLNWTFALQYYKNSEHLTPELFSTIQYAMYWQAKHVFDNIHF
                     SRIAVRNNHAITETLALYIIGSLYPQFPQAATWKSKGKRWFEAEIAYQVYEDGTFLQF
                     SMNYHGVVVQLLSWAIAIADGLGELFQEVVYDRAYKSLQFLYAAQNDETGWLPNYGSN
                     DGALFFPLNGCDFNDFRPQLNALHVMLTGHALYENGPWVEDAWWFRALLNGRKAMAPL
                     ERKTGWQVFTKGGYAILRDAETISFIRCGSHKDRPAQADNLHLDVWIGEQNVLHDAGS
                     YQYNTTPDLVKYFMGTSSHNTVMLGHHDQMLKGSRFIWYHWTQAKDMQVGETEEYFTF
                     RG"
     gene            complement(1570..2685)
                     /gene="wecB"
                     /locus_tag="VLL95_07660"
     CDS             complement(1570..2685)
                     /gene="wecB"
                     /locus_tag="VLL95_07660"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HSR38776.1"
                     /translation="MQNTLVTIVAGARPNFMKIAPIIAEIEKVKSEGAAIDFRLVHTG
                     QHYDGKMSDNFFEQLGIPEPHINLGARGATQAEQTAAIMVSFEKDLMENRPSLVLVVG
                     DVTSTMACAIAAQKLCIPVAHVEAGIRSGDWAMPEEINRIVTDSITNYFFTTTELAGN
                     MLKKTGVEEGRIFFVGNTMIDTLLRQMPHFRKPPFWDEYHLAPQQYLVLTLHRPSNVD
                     DESQLRSLFEVIERASQSMPVIFPAHPRTTKNMERFGIQLNNVKLVEPMGYLEFNYLV
                     QHAKAVITDSGGVTEETTVMNVPCMTIRENTERPETCTMGTNELLGTKPEALEAAMNK
                     VMEGNWKKGSVPPLWDGRTAERIVAAILSLNLGSRGE"
     gene            complement(2716..3237)
                     /locus_tag="VLL95_07665"
     CDS             complement(2716..3237)
                     /locus_tag="VLL95_07665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HSR38777.1"
                     /translation="MLKFFSNSHNRAYLRGLATEMGESTNAVRVELNRLTEAGLLEHE
                     QEGNTVLYKANRKNPFFGVLHNLVMKYMGLDYVIDEVIRKLGKLELAFINGDYARGVD
                     SGIIDLVLVGDSFDQVYLSGLLKRAEEISKRRIRLLTLSVEEFKKLEPSLDVSKSLIL
                     WASDASGYHSSNS"
     gene            complement(3323..>3557)
                     /locus_tag="VLL95_07670"
     CDS             complement(3323..>3557)
                     /locus_tag="VLL95_07670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38778.1"
                     /translation="DNFRITEGFGFSGFKRLKTTQDKGHKTQFAQLISKVKEGGEPLI
                     PAADVFNVTAASFAAIQSLQSGTWVDVASILEA"
BASE COUNT          843 a          926 c          818 g          970 t
ORIGIN      
        1 ttgccccgaa aagtaaaata ctcttccgtt tcgcctacct gcatatcctt tgcctgagtc
       61 cagtgatacc aaataaaccg gctgcccttc agcatttgat cgtgatggcc cagcatgacc
      121 gtgttgtgag aagaagtccc catgaaatat ttcacgaggt ccggtgtggt gttgtattgg
      181 taggaacctg catcgtgcag cacattttgc tcacctatcc agacatccag gtgcaggttg
      241 tcagcttgtg cgggacggtc tttgtgcgaa ccacagcgga taaagctaat ggtttctgca
      301 tcacgaagta tggcatagcc tccttttgta aatacctgcc agccggtctt tcgttccagg
      361 ggtgccattg cctttctgcc attgagcaat gccctgaacc accaggcatc ttccacccag
      421 ggtccatttt cgtacaatgc atggccggta agcatcacat gcaatgcatt caactgcgga
      481 cggaaatcat tgaagtcgca gccattcaac ggaaaaaaca gggcgccgtc attggatcca
      541 taattaggca accaaccggt ttcgtcattt tgggccgcat acagaaattg gagcgacttg
      601 taggccctgt cgtaaaccac ttcctggaac aattctccca atccatccgc aatggctatt
      661 gcccaggaaa gcaattgcac cactaccccg tggtaattca tgctaaactg caagaatgtg
      721 ccgtcttcat atacctggta ggcaatttct gcctcgaacc aacgctttcc tttcgatttc
      781 caggtggcag cctgcggaaa ctgcggatat agtgaaccaa ttatgtaaag cgccagtgtt
      841 tctgtaatgg catgattgtt acgaaccgca atgcgactga aatggatgtt atcaaacaca
      901 tgttttgcct gccagtacat ggcatactgg atagtgctga acaattcagg cgtaaggtgc
      961 tcgctgtttt tgtaatactg caatgcaaat gtccagttga gcaatcgcaa tgacatttcc
     1021 tggctgcact tgtaattcgg ccctgcattt acagggttgg catttatcca agaaagaatt
     1081 tcgttgaaga cccattcgct atggtcagta tcatgctgcg catcatagcg aatcacttca
     1141 tacaagtagg cgaaccgtga cttctcccac acatatttga tatcgccggc ttcagcagag
     1201 aagtcgttca ctttactcca gtgtactttg ttgctgtatc gataacccgt caacggatgg
     1261 gtgagccaat cgtaatccaa tccaagggcc ttatcgacgg cattgaagaa tttgatcctg
     1321 ccctcaagac aggctggagg atcaatagtc tttaccggaa gagaagcata tgcttggcca
     1381 ggcattgcct gcaggaaaaa agggatttgt gcattccgcc atgcatccaa cgagatgtaa
     1441 tcctggtgta ttggctgaat tggaaattgt ttttcgaacc aacccgttct tttctttagt
     1501 tcatgcgtta ccctgaacac tacgtaacgc atgcccatgt ttcgaaccaa ttgatatgcc
     1561 tgctgtagct tattcacccc ggcttccaag attcaatgaa agaatggctg caacaatgcg
     1621 ctcagcggta cgcccatccc acagcggagg aacagagccc tttttccaat ttccttccat
     1681 caccttgttc atggccgcct ccagcgcttc gggcttggta cccagcaatt cattagtacc
     1741 catggtgcag gtttccggtc tttccgtgtt ttccctgatg gtcatgcaag gcacattcat
     1801 cacggtggtt tcttccgtta cgccgccgct gtcggtgatt accgcctttg cgtgctgcac
     1861 caggtaattg aactcgagat accccatggg ctccaccagc tttacgttgt tcagttgaat
     1921 gccaaagcgc tccatgtttt tggtggtgcg gggatgcgcc gggaatatca cgggcatcga
     1981 ctggctggct ctttcaatta cttcaaacag gctgcgcaat tgcgattcat catccacatt
     2041 gctgggacga tgcaaagtga gcaccaggta ttgctgcggc gccaggtggt attcatccca
     2101 gaatggcggc ttgcggaaat gcggcatctg cctgagcaac gtatcaatca tggtattacc
     2161 cacaaaaaag atacgcccct cttctacccc ggtctttttg agcatattac ccgccagttc
     2221 cgtggtagtg aaaaaataat tggtgatgct atctgtcact atccggttga tctcctccgg
     2281 catggcccaa tcaccgcttc tgatgccagc ttctacgtga gccaccggta tgcatagttt
     2341 ttgtgcagca atggcacagg ccatggtact ggtcacatcg cccactacta aaaccaggct
     2401 gggcctgttt tccatcaggt ctttttcgaa actcaccatg atggcagccg tttgctcagc
     2461 ctgcgtagcg ccgcgggctc ccaggttgat atgaggttcc ggaatgccga gctgctcaaa
     2521 aaaattgtcg ctcattttgc catcgtagtg ctggccggta tgcaccagcc ggaaatcgat
     2581 ggctgcacct tcgctcttta ctttttcaat ctctgcaatg atgggtgcga tcttcatgaa
     2641 attcggcctt gcacccgcaa ctatcgtaac taatgtgttt tgcattttat gattgattct
     2701 tcagtagtat gatacttatg aattggacga atggtacccg ctggcatcgg aagcccacaa
     2761 tatgagggac ttgctgacat ccaatgaggg ctccagtttc ttaaattctt caacactcaa
     2821 agtgagcaga cgtatcctgc gttttgaaat ttcttcagcc cttttcagca ggcctgacaa
     2881 atacacctgg tcgaaactgt cgccaaccaa aaccaggtca ataatgccgc tgtccacccc
     2941 acgggcataa tcgccgttga tgaaggccag ttccagttta ccgagtttgc gaatcacctc
     3001 gtcaattaca taatcgaggc ccatgtattt catcaccagg ttgtgcagca cgccaaagaa
     3061 ggggttcttc ctgttggctt tgtacagcac agtgttgcct tcctgttcgt gttccagcag
     3121 accggcttcc gtcagccggt tgagttccac ccgcaccgca ttggtgcttt cccccatttc
     3181 ggtggccaat ccacgcaggt aggcacggtt atgactgttg ctaaaaaatt tcagcaacaa
     3241 tttcatgcgg gttttcgatg tgatcaggct ttcgagcacc tggctgtgaa aaaatgtttt
     3301 tctaaaaaaa tgtacaacaa catcacgctt ccaatatgga tgcaacatcc acccatgtgc
     3361 cgctttgcag actttgaatt gccgcaaaag aagcagcggt aacattgaaa acatcggcgg
     3421 cagggatgag cggttcgccg ccttccttca ccttgcttat caattgtgcg aattgggttt
     3481 tgtgtccttt gtcctgtgtg gtcttgagac gcttgaaacc actgaatccg aagccttccg
     3541 ttatcctgaa attgtcc
//
LOCUS       DATIQF010000465         2088 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_174897,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000465 DATIQF010000000
VERSION     DATIQF010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174897"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(41..1558)
                     /locus_tag="VLL95_07675"
     CDS             complement(41..1558)
                     /locus_tag="VLL95_07675"
                     /inference="COORDINATES: protein motif:HMM:NF013524.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C25 family cysteine peptidase"
                     /protein_id="HSR38779.1"
                     /translation="MNPKKIVVSSKSNLLLKYENKFDSIDALLKKLVSADAKKSVDTT
                     IVYIDDKASTKAAGITAVKSITARNCKKAIDDLYKKHSPAYLMIFGAQDVFPFVEIIN
                     PAGGDDDETVPSDLPYACEAGYSTSINAFTGPTRVVGRLPDIPGKASVAYVTRLLNNV
                     IKSKPRKDNAYHNYFAVSCHSWTKSTQKSLQAMFGQNNKLLISPPSGKAYTKSQLQAP
                     THFYNCHGAQNDYNYYGQKGNSYPTAFNTNQLNKQISFGTVVAAECCYGAELVNIDFA
                     ENPDDISIANNYLLQGALAFVGSSTVAYGPPDGQGLADLITQYFISFVLQGASSGRAM
                     LQARQKFLDVSGPSLDPYELKTLAQFYLLGDPSVQCVLPQDAVPAKEMQMNPTFNNRL
                     NLFNKGVSLRKSIAPSEKVKTVSKSKHSDQIAQLLKKNAFKVVDQEGLYVVKSGMYDL
                     KALSGVAAKKATQAVQFRTFVSLGKAIKKGVTDMKVMVVKETDGEVLGWRVYVRK"
     gene            complement(1591..>2088)
                     /locus_tag="VLL95_07680"
     CDS             complement(1591..>2088)
                     /locus_tag="VLL95_07680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38780.1"
                     /translation="SATPQIAAAAAIYYRKYYQQLQSLQPWQRVEAIRNALYKSAKKY
                     VNLKDEDYRSYFGNGILQANAALQIPVADNLQATPADKVPWFPILSTLFKGPKPEASA
                     SLQMFNTELAQLVFLHPALGALIEEDRKPMNRVSQKQWKLFADAVISHPATSETLRTF
                     LKASR"
BASE COUNT          492 a          516 c          493 g          587 t
ORIGIN      
        1 gcccattact tccatgggtt gatgaccggc tgttttcttt ttacttgcgc acatacaccc
       61 tccatccgag cacctcacca tcggtttcct tcaccaccat caccttcata tcggtcacgc
      121 cctttttgat ggctttgccc agtgatacga atgtacggaa ttgcactgcc tgcgtggcct
      181 ttttggcggc taccccactc agtgctttca gatcgtacat gccggatttc accacgtaaa
      241 gcccttcctg gtctaccact ttgaaggcat tctttttgag cagttgcgca atctgatccg
      301 aatgcttcga ctttgacact gtctttactt tctcactggg tgcaatactc ttacgcaggc
      361 tgactccttt gttgaaaagg ttgaggcgat tattgaaagt gggattcatc tgcatctcct
      421 tggcaggaac tgcatcctgc ggcagcacac actgtactga tggatcgccc agcaaataga
      481 actgcgccag cgtctttaat tcataaggat ccaacgaagg ccccgacaca tcaagaaact
      541 tctgcctcgc ctgcaacatg gccctgccgg aagaagcgcc ctgcaacaca aatgaaataa
      601 aatattgagt gatgaggtct gccagcccct gtccatctgg cggaccatag gcaacagtgc
      661 tgctgcccac aaaggccaat gcaccctgca acaaatagtt gttagcgatg cttatgtcat
      721 caggattctc agcaaaatca atgttcacca gttctgcacc atagcagcat tcggccgcca
      781 ccacggtacc aaagcttatt tgcttgttga gttgattggt gttgaacgct gttggatagc
      841 tgttgccttt ttgcccgtaa tagttgtagt cgttttgcgc cccatggcag ttgtaaaaat
      901 gcgtgggtgc ctgcagttgc gatttcgtgt aggctttgcc actcggggga ctgatcaata
      961 atttattatt ctggccaaac atggcttgca ggctcttttg cgtcgacttg gtccatgaat
     1021 gacaagaaac ggcaaaatag ttgtggtaag cattgtcctt cctgggtttg ctctttatca
     1081 cattgttcaa cagcctggta acataggcca cactcgcctt gccggggata tctggaagcc
     1141 tgcccaccac ccgtgtagga cccgtgaaag cattgatgct ggtagaataa cctgcttcac
     1201 aggcataagg cagatcagac ggaaccgttt catcatcatc gcctccggca ggattgatga
     1261 tctcaacaaa tggaaaaaca tcctgggcac caaaaatcat gaggtaagcc ggcgaatgct
     1321 ttttatacaa atcatcaatc gcttttttac aattgcgggc cgtaatgctt ttgacagctg
     1381 taatacctgc ggcctttgtc gaagccttgt cgtcgatgta cactatggta gtgtcaaccg
     1441 atttttttgc atcggcggaa accagtttct tcagcaaggc atcaatgctg tcaaatttgt
     1501 tttcatactt caaaagcaaa ttgcttttac tactgacaac aatttttttg ggattcatgg
     1561 tatatggttt tttgagtgag gagaaagcga ctaccgggat gcttttaaaa aggtgcgcaa
     1621 ggtttcagag gtggccggat ggctgatcac cgcatcggca aacagtttcc actgtttttg
     1681 gctcaccctg ttcattggct tcctgtcttc ttcaatgaga gcgcccaaag cagggtgaag
     1741 aaatacgagc tgcgccaatt cggtattgaa catttgcagg gaggcactgg cttcaggttt
     1801 gggcccttta aacaaggttg acaaaatggg aaaccaggga accttatctg ctggtgtggc
     1861 ctgcaaatta tcggccaccg gtatttgcaa cgcagcattg gcctgcagga taccattgcc
     1921 gaaataggat cgataatctt cgtctttcag gttgacgtat tttttggccg acttgtacaa
     1981 tgcatttcga atggcttcca ccctttgcca tggctgcagt gattgcaact gctggtagta
     2041 tttgcggtag tagatggctg ccgccgccgc gatttgcggt gtagccga
//
LOCUS       DATIQF010000466         6056 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_236008,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000466 DATIQF010000000
VERSION     DATIQF010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6056
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236008"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1455
                     /locus_tag="VLL95_07685"
     CDS             <1..1455
                     /locus_tag="VLL95_07685"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSR38781.1"
                     /translation="NLHPALSRMISGIATQRNLVWISSSDKGIVVLDGKKVIAALSKA
                     NGLSSDICRSIYAWGNHLWVGTNSGLNKVVYADEKIAITKFGTYDGLPSEIIEAILEK
                     DSLVFIGTSEGLTFFNEKKLTTNSSCKLHILGVRPAKEYALINGKYYLPYNHNTVGVD
                     FTAISFRSAGDIQYFYRLQGLNEKWQVTRNQNLEFTALPPGEYTLELQAVNRFGVKSA
                     MIPLTFVIDTPFWRTWWFITLAVLAAVFVTVYLLNRRNEKQRQRLEQKMEVEKKLAEL
                     EQQALQAQMNPHFIFNCLNSIQQYFLTNDGAKANKFLSMFAALVRETLHFSSQKSIRV
                     SDEVQYLSRYLEMEKMRFGDHFVYEIKVDPNIPINFVEIPALMLQPYVENAIRHGVRH
                     RKSGDGRIQISFEIKGEELHCIVADNGIGREKSRAMRGRQPVEYQSRGMELGQKRIEA
                     LNKLYQREIKVEIKDLKDDQGVALGTEVHLIIPV"
     gene            1458..2213
                     /locus_tag="VLL95_07690"
     CDS             1458..2213
                     /locus_tag="VLL95_07690"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSR38782.1"
                     /translation="MTSKIKAVIVDDEAGSVRTMEELLAKYCHSVEVVGKAFDPEEAA
                     EVIAIHKPNLVFLDIEMPFGNAFDLLDKIAPVEFEIIFVTAFNNYAIKAFRYAAADYL
                     LKPIDIEELKESVARIEQRMGEQRVNARIATLLENLQTPETGAFRKISLPTSDGFRIE
                     DIHNIMYLNAEGSYTFIFMKGGEKILVSKNLKEFEDILPESIFCRIHHSSIVNINYVK
                     QYYKGRGGEVVMEDGEVIMISTRKKADFFKMIR"
     gene            complement(2287..2373)
                     /locus_tag="VLL95_07695"
     tRNA            complement(2287..2373)
                     /locus_tag="VLL95_07695"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2337..2339),aa:Leu,seq:cag)
     gene            complement(2465..3271)
                     /locus_tag="VLL95_07700"
     CDS             complement(2465..3271)
                     /locus_tag="VLL95_07700"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: protein motif:HMM:NF008808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HSR38783.1"
                     /translation="MQALTAAAWADRELLKHHDYTSAVEAVIEEVDKGRLRVASPSEN
                     GWVVNEWVKQAILMYFAIRKMETHSLPPFEFYDKMKLKSNYADLGVRAVPHAVARYGA
                     YLARNVVMMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQA
                     SPVIIEDGCFLGSRSIVVEGVIVEKEAVLGANVVLTKSTKIIDVSGKEPVEYKGRVPA
                     RSVVIPGTYNKEFPAGSYGVSCALIIGQRKASTDLKTSLNDALRDFNVAV"
     gene            complement(3364..4275)
                     /locus_tag="VLL95_07705"
     CDS             complement(3364..4275)
                     /locus_tag="VLL95_07705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR38784.1"
                     /translation="MKVSGFTYVRNGLHLDYPFTESIRSLLPLVDELIVVVGDSHDGT
                     REAVVGIGDPKIKIVDSVWPADMRKGGKVFAMQASIGLDHCSADADWIITLQADELFH
                     EKEVPVIRKYMEEALGDSRIEGFLFRFLNFFGDFNHYAPSRRYHQHEIRIIRNGINAR
                     PYRDSQGFRIFSNNDDERTARKLKVWWIPCTVYHYSYVKNPKTQLLKQAEFGSRWHAG
                     EDYVSRFLAAHPDGFDYGQIDYLADFNGAHPSLMEQRIQSQDWDFNYDPSISNMSFKE
                     KLLRQLEILTGRQFFINKNYKIVRSTA"
     gene            4400..5092
                     /locus_tag="VLL95_07710"
     CDS             4400..5092
                     /locus_tag="VLL95_07710"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR38785.1"
                     /translation="MNIAFDAKRAFLNDTGLGNYSRTLISSLASLFPQHQYYLYTPKT
                     GSLFKPDADNIRIQLPEKPFDKIFNSAWRSRGVVSDLLNHHIHLYHGLSHEIPQGIQH
                     TQVKSVVTMHDLIHERYPGQYPWLDRKIYSRKFRFACRHADAIIAISEQTKRDLVEFY
                     GANASKIHVCYQSCDQGFAQVSTNETKILVRRKYKLPDQYLLYVGSIIERKNLLNICK
                     ALRSATDVTFHW"
     gene            5095..5544
                     /locus_tag="VLL95_07715"
     CDS             5095..5544
                     /locus_tag="VLL95_07715"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR38786.1"
                     /translation="MGKGKVYYDQVKQYLQENNLEERVLFLSYFRQENGITGVEASDL
                     PAIYQMSRMLIYPSFFEGFGIPVLEGLNSRIPVITSNTSCLPEAGGNAAFYVDPGQPE
                     DIAEKIRLVLHDDALVSKHIANGVAYAQHFTNEKAATAVHQVYQSLF"
     gene            5629..>6056
                     /locus_tag="VLL95_07720"
     CDS             5629..>6056
                     /locus_tag="VLL95_07720"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSR38787.1"
                     /translation="MNVVDEMIVVDSGSTDGTVAICERLGARVFHQPFLGYIEQKNFA
                     ASLAGSEYILSLDADEALSQHLVVWLEQARQSGLTYDAYVFNRLNNYCGSWIKHGDYY
                     PDKKLRLWRKEKGYWGGENPHDKVIALPGTTVARIKHDIL"
BASE COUNT         1697 a         1399 c         1415 g         1545 t
ORIGIN      
        1 aatctgcatc ctgcgctttc aaggatgatt tccggaattg ccacgcagag aaacctggta
       61 tggatcagtt cgagtgacaa aggaatagtg gttttggatg gcaaaaaggt cattgccgct
      121 ttgtcaaagg ccaatgggct gagcagtgat atatgccgga gtatttacgc ctggggaaat
      181 cacctatggg tgggtaccaa tagcgggctg aacaaagtcg tttatgcaga tgaaaaaata
      241 gccatcacta aatttggcac atatgatggt cttccatccg aaataattga agccatttta
      301 gaaaaagatt cgctggtatt tattggcaca tctgaaggcc tcacattctt taatgaaaag
      361 aaactgacta ccaattccag ctgtaaactt catattcttg gggtcaggcc tgccaaagag
      421 tacgcattaa taaatgggaa atattacctg ccctataacc acaacactgt gggcgtggat
      481 tttacagcca tatcatttcg atctgcagga gatatacaat atttctacag gctacaaggg
      541 ctgaatgaaa aatggcaggt gacccgaaat caaaacctgg aattcacggc cctgccgccg
      601 ggagagtata cacttgaatt gcaggccgtt aatcgatttg gtgtcaagag cgccatgata
      661 cctttgactt ttgtgataga cacaccattt tggcgcacat ggtggttcat cactttggca
      721 gttttagccg cagtatttgt cacagtctat ttgctcaacc gtagaaacga aaagcaaaga
      781 caaagactgg agcagaaaat ggaagttgaa aagaaactgg cagaattgga gcagcaagcc
      841 ctgcaggcgc aaatgaaccc tcattttatt ttcaattgcc tcaattcaat ccagcaatac
      901 tttctcacca acgatggtgc aaaggccaac aagttcctca gcatgtttgc ggcattggtg
      961 cgagaaacat tgcatttctc aagtcagaag tccatacggg tttcagacga agtgcaatac
     1021 ctctccaggt atttggaaat ggaaaaaatg cgatttggag atcattttgt ttatgagatc
     1081 aaagtggacc cgaatatccc gatcaacttt gttgaaatac cagccctcat gctgcaacca
     1141 tatgttgaaa acgcaatcag gcatggggtg cggcacagaa aatccggtga tggcagaatc
     1201 cagatttcct ttgaaattaa gggagaagag ttgcattgca tcgttgcaga caacgggata
     1261 ggccgtgaaa aatcaagagc tatgcgtggc aggcaacctg tggaatacca atccagggga
     1321 atggaattag gtcagaagcg aattgaagcg ctgaacaagc tttatcagcg ggaaataaaa
     1381 gtggagatca aagatctgaa ggatgaccag ggggtagccc ttggcacaga agtgcacctt
     1441 ataatacctg tttaaaaatg acgtcgaaaa tcaaagcggt tattgttgat gatgaagcag
     1501 gcagtgttcg aaccatggaa gaactgcttg cgaaatactg ccattcggta gaagtggttg
     1561 ggaaggcatt cgacccagaa gaggccgcgg aggtcattgc cattcataaa cccaacctcg
     1621 ttttcctgga tatcgaaatg ccatttggca atgctttcga tctgctggat aagatagctc
     1681 ccgttgaatt cgaaatcatt tttgtaacag ctttcaacaa ctatgccatt aaggcctttc
     1741 ggtatgcggc cgctgactat ttgctgaaac cgatcgatat cgaagaattg aaagaatcag
     1801 tggcaaggat tgaacagcga atgggagagc aacgggtgaa tgcaaggatt gccacactgc
     1861 tggaaaacct gcaaaccccg gagaccggag ctttcaggaa aataagtctc cccacttctg
     1921 atggattcag gattgaggat attcataaca ttatgtacct gaatgctgaa gggagttaca
     1981 ctttcatttt catgaaagga ggggagaaga tcctggtatc aaagaacctg aaagaatttg
     2041 aagacatatt gcccgagagc atcttctgtc gaattcacca ttccagtatc gtcaacatca
     2101 actatgtaaa gcagtattac aaggggcgtg gtggagaagt ggtgatggag gacggggagg
     2161 tgatcatgat ctcgacccgc aaaaaggccg actttttcaa gatgatcagg taggccgaca
     2221 tttcttctcg tattggcatt gatccaaaaa agaaaaagat ctgaaccact tggtcagatc
     2281 tttttttggt gcccaggact ggattcgaac cagcacaccc gttaaggcgc tgcgacctga
     2341 acacagtgcg tctaccaatt tcgccacctg ggcatacggt gtctgttttt ttcagatcgg
     2401 gctgcaaata tagaagccta tttgaaaaat ccaactgaat ttttctttgg caaataatct
     2461 ttcactaaac cgctacatta aagtcgcgga gcgcatcgtt cagactggtt ttcaagtcgg
     2521 tactggcttt gcgttgccca attatcaagg cacaactcac tccatagctg ccggccggaa
     2581 actccttgtt gtaggtgccc ggaatgacca cactgcgggc gggcaccctt cctttgtatt
     2641 ctaccggctc tttgccgctt acgtcaatga tcttggtgct tttggtcaat accacgttgg
     2701 cgcccaaaac tgcttctttt tctacgataa cgccttccac cacaatgctg cggctgccca
     2761 aaaaacagcc atcttcaata atgaccgggc tggcctggag tggttccaat acgccgccaa
     2821 tgccgacacc accgctcagg tgtacattct tgccaatttg ggcgcagctg ccaactgtag
     2881 cccaggtatc taccatggtg ccttcgtcca catacgcacc aatatttaca taggaaggca
     2941 tcattaccac gtttcgggcc aggtaggccc cataacgggc aacggcatga ggcacagcac
     3001 gtacacccaa atcggcgtag ttgcttttca gcttcatctt gtcgtaaaat tcaaagggag
     3061 gcagggaatg tgtctccatt ttgcgaatgg cgaagtacat gagaatggcc tgttttaccc
     3121 attcatttac cacccagcca ttctcggatg ggctggccac ccgcaaccgg cctttgtcca
     3181 cttcttcaat tactgcctcc acggcgctgg tataatcgtg atgcttgagt aattctctgt
     3241 cggcccatgc cgctgcagtt aatgcctgca aatccatgat gatgttttat ttaaatgatt
     3301 accggatctt gttatcctaa aaattggggt gcaagataag tcgctttgtc ctgttgaaca
     3361 tactcatgca gttgacctta cgatcttata attcttgttg ataaaaaact gccttccggt
     3421 cagtatctcc aattggcgca gcagtttttc cttgaatgac atattgctga tggaaggatc
     3481 gtaattgaaa tcccagtcct gcgattgaat cctttgctcc atgagtgacg gatgcgctcc
     3541 attaaagtca gccaggtaat caatttgccc gtaatcaaac ccatccggat gggccgccaa
     3601 aaaacgggaa acataatcct cgcctgcatg ccacctgctg ccaaactcag cctgtttcaa
     3661 caattgtgtt tttgggttct ttacatagct gtagtggtac actgtgcaag gtatccacca
     3721 cactttcagt ttacgggcag tacgctcgtc atcattattg gagaaaatcc tgaatccctg
     3781 ggagtcgcgg taaggacggg cattaattcc attccgtatt atccttattt cgtgctgatg
     3841 gtatcttcgg ctgggagcat aatgattgaa atcgccaaaa aagttgagga acctgaacag
     3901 gaacccttca atacggctgt caccaagcgc ctcttccatg tatttcctga taacaggcac
     3961 ttctttttcg tgaaacaact catctgcctg cagggtaata atccagtctg catcagcact
     4021 gcaatggtcg agcccaatac tggcctgcat ggcaaacact ttgcctcctt tgcgcatgtc
     4081 cgccggccat accgagtcta caattttgat tttcgggtct ccaattccta caacggcttc
     4141 cctggtgcca tcgtgtgagt cacccaccac cactattaat tcatccacca atggaaggag
     4201 gctccgtatc gattcggtaa agggataatc aagatggagg ccattacgga cgtaggtaaa
     4261 tccggatact ttcattgcat tatagttgac atcattttcg aaaaaggaat gtaaatgtag
     4321 gtgcttccac gggcaacagg ccctgttacc attgagcatg gtgcctttca gatatatttg
     4381 ctgccgaagc agggatacca tgaacattgc cttcgatgca aaaagagctt tcttaaatga
     4441 taccgggtta ggcaattaca gccggacact gatatcgtcg ttggccagct tgtttccaca
     4501 gcaccaatac tatttgtaca ctcccaaaac cggaagcctt ttcaaaccgg atgcggataa
     4561 catcaggatc caattgcctg aaaagccatt cgacaagatt ttcaattcgg cctggcgcag
     4621 cagaggtgta gttagtgacc tgctcaacca tcatattcac ctataccatg ggctcagcca
     4681 tgaaatacca caaggcatcc aacataccca ggtcaaatcg gtagttacca tgcacgattt
     4741 gattcatgag cggtatcccg gtcaataccc gtggctcgac cgaaaaattt atagccgaaa
     4801 gttcaggttt gcgtgccgac atgcagatgc catcattgcc atcagcgaac aaaccaaaag
     4861 ggacctggtt gaattctacg gagccaacgc ttccaaaatt catgtttgct accaaagttg
     4921 tgaccagggt tttgcacagg tttcaaccaa tgaaaccaaa atccttgtgc gccggaaata
     4981 caaactgcct gaccaatact tgctctacgt tggatcgatc atcgaaagga aaaatctcct
     5041 gaacatttgc aaggcactgc ggagtgccac cgatgttacc ttccattggt agtagtggga
     5101 aaagggaagg tttattacga ccaggtgaaa caatacctgc aggagaacaa cctggaagag
     5161 agagttttgt ttctatccta cttcaggcag gaaaacggaa ttacaggagt ggaggccagt
     5221 gatttacctg ccatttatca aatgagccgg atgctcattt acccatcatt ttttgagggc
     5281 tttggcatcc ctgtgctgga agggttgaac agcaggatac ctgtgattac cagcaataca
     5341 tcctgcctgc ccgaagcagg gggcaatgcg gctttctatg tagaccccgg ccagccggaa
     5401 gatattgctg aaaaaatacg tctggtgctt cacgatgatg cactcgtaag caaacacatc
     5461 gccaatggag tcgcttatgc gcagcatttc acaaatgaaa aagcggccac agctgtgcac
     5521 caggtgtatc aatcattatt ttaatacccc ctctgcatgt cttccatatc cctggttgta
     5581 atcgcattta atgaggctga aaaaattgaa cgttgcctca aatctgcaat gaacgttgtg
     5641 gacgaaatga ttgtagttga ttccggctca accgacggca cggtggccat ttgcgaaaga
     5701 ctgggggcca gggtctttca tcagcctttc ctgggataca tcgaacaaaa gaattttgca
     5761 gccagcctcg ctggcagtga atacattctg agcctggatg cggatgaagc gctgagccag
     5821 cacctggttg tttggttgga acaagccagg caatcgggcc tcacgtacga tgcctatgtg
     5881 tttaatcgat tgaacaacta ttgtggaagc tggatcaaac atggcgacta ctatcctgat
     5941 aaaaagttga ggctctggag aaaggagaag gggtattggg ggggcgaaaa tccacacgac
     6001 aaagtaattg ccttgccagg caccactgta gcaagaatca agcacgacat attgca
//
LOCUS       DATIQF010000467         2866 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_159852,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000467 DATIQF010000000
VERSION     DATIQF010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2866
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159852"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1286
                     /locus_tag="VLL95_07725"
     CDS             <1..1286
                     /locus_tag="VLL95_07725"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSR38788.1"
                     /translation="FNKLANKSLSLSYLLDGKLVAGYLALLVCTALLAGFYPALVLSS
                     FDPVKTLYGRFQLAGRNYLQKGLVVLQFSLATILIIGTITIYRQFDFMLSKPLGYNDQ
                     HLVTVEKWEMTRPEFQRFRSELMKDPNIVDVSPRNSGYWGTGARVNGTENISFAYETA
                     GTNHLTNLQIPLVQGRNFDPNLPTDSTESVLVNETFVKAAKWKQPLGQIVDFFWANRK
                     MKVIGVVKDHHFASLTEKIEPQLITVLPDNPYGMAFIKLKPGSDAQALEHISKTFKSN
                     FSFYPYSYNFRADTNRNAYESEAKWKQMMMFGAILTIFISCIGLFGLSVLNAEKRVKE
                     IGIRKVMGASVRQIAQKLSAEYLVLVSIALLAGIPAAWLAIHQWLEGYPYRIEIGWSL
                     FALAAAMVMLIAFLTVSFQAIRAGRSNPVKSLRTE"
     gene            1296..>2866
                     /locus_tag="VLL95_07730"
     CDS             1296..>2866
                     /locus_tag="VLL95_07730"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR38789.1"
                     /translation="MFNSLFKIVFRKLWKYKTYTLINVLGLGIAIGAIVWGYQTYRFA
                     FSYDSQHKEADKIYRVLTFKKDADGVRGLVPMPLVAGAVNDFSGIKNAARWDSRGASV
                     RFADKEVFAELVHFTDPSFFSLFNFPLIAGTYSISDPNALLITEATAKKYFGNENPLG
                     KTLTIYADAEYAKPLTITGILKNPPSNSTFHFAFVTNFENCLNVDGAKLAPDNWSWFL
                     DAAFLQIPNPADARRIETELNRYVAVQNKARQDWKVTSFKLITVKENASLSTVIQNNG
                     LYERPSDAAAYGALVLALLIFISACLNFSNTTVAQANRRLKEIGVRKVLGSSHRQLIR
                     QLMLESAVVVVVAILLSMAFNSWWLPTFSAMFGNLWVEANYLKDTTLQIFMLLLFVIT
                     TLLAGMYPAFYVSRFNATSIFRGNVKFGDSSLFSRIMLGLQLSIAIITVIAGVAFARN
                     SEYQRKFDYGYNLESSMGVVFNDSSSYLPLKNELAKIPEVTSLSGTRNHIAFGFRTPV
                     MEADGLKKEACYMEVG"
BASE COUNT          738 a          666 c          705 g          757 t
ORIGIN      
        1 tgttcaataa gctggccaac aagtcgttgt cactatcgta cctgcttgat ggcaagctgg
       61 tagcaggtta cctggccttg ctggtttgta cggcgctgct ggcaggcttt tacccggccc
      121 tggtattgtc ttcatttgac cccgtgaaaa cgctgtatgg tcgttttcag ctggcaggaa
      181 gaaactacct gcagaaaggc ctggtagtgt tgcagttttc gctggctacc atcctcatca
      241 ttggcaccat caccatctac cgtcagttcg attttatgct gagcaaaccg cttggctaca
      301 acgaccagca cctggtgacc gtagagaagt gggagatgac gcgtcctgaa tttcagcggt
      361 tccgctcgga gttgatgaaa gatcccaaca ttgtggatgt atcgccccgg aacagtggct
      421 actggggcac cggtgcccgg gtcaatggaa cggagaatat ttcatttgcc tacgaaacag
      481 ccggcaccaa ccacctcacc aacctgcaga taccgctggt gcagggccgc aatttcgatc
      541 ccaaccttcc gaccgattct actgaatcgg tgctggtgaa cgaaaccttc gtaaaggcag
      601 ccaaatggaa acagccgctt gggcaaatcg tggatttctt ttgggccaac cgaaagatga
      661 aagtaattgg ggtagtgaag gatcaccatt tcgcctcgct taccgaaaaa attgaaccac
      721 agctgatcac cgtgctcccg gataatccgt atggcatggc gtttatcaaa ttgaaacccg
      781 gcagcgatgc ccaggcattg gaacacatca gcaaaacctt caaatccaat ttctcttttt
      841 atccctacag ctacaatttt cgcgccgata ccaatcgcaa cgcttacgaa tcggaagcca
      901 aatggaaaca gatgatgatg tttggcgcca tcctcaccat tttcatttcg tgtattggat
      961 tgtttggttt gagtgtattg aatgctgaaa agcgggtgaa agaaattggc atccgcaaag
     1021 tgatgggcgc ctcggtgagg cagattgcac agaagctttc cgcagagtac ctggtattgg
     1081 taagcatcgc cctgctggct ggtatacctg ccgcctggct cgccattcac caatggctcg
     1141 aaggatatcc ttaccgaatt gaaatcgggt ggtcgttgtt tgcactggct gctgccatgg
     1201 tgatgctgat tgcttttctc actgtaagct tccaggccat cagggcaggc agaagcaacc
     1261 cggtaaaaag cctgagaaca gaataacatc gaattatgtt taatagcctg tttaagatcg
     1321 tattcagaaa gctgtggaag tacaaaacct acacattgat caatgtgttg ggtttgggta
     1381 tagccatcgg tgccattgtg tggggatatc aaacgtatcg gtttgccttt agctacgata
     1441 gccagcataa ggaggctgat aagatttaca gggtacttac tttcaaaaaa gatgcggatg
     1501 gtgtaagagg cctggtgccc atgccattgg tggcaggtgc agtcaacgat ttttcaggca
     1561 tcaaaaacgc tgcccgctgg gacagtcgcg gggcaagtgt gcgttttgca gacaaagaag
     1621 tatttgccga gctggtccat tttactgatc cttccttctt ttcgcttttc aattttccat
     1681 taattgccgg aacctattcg atcagcgatc ccaatgccct gttgataacc gaagcaactg
     1741 ccaaaaaata ttttggaaat gaaaacccct tgggcaaaac cctgacgata tatgctgatg
     1801 cagaatatgc caaaccactg acgataacag gcatattgaa aaatccgcct tccaattcca
     1861 cttttcattt tgcgttcgtc acgaattttg aaaattgcct gaatgtagat ggcgcaaagc
     1921 ttgcacccga caactggagc tggtttttgg atgccgcctt tttgcaaata cctaaccctg
     1981 cggatgccag gcgcattgaa accgaattga accgatatgt ggctgttcaa aacaaagcca
     2041 ggcaggattg gaaggttact tcctttaaac tgatcactgt taaggaaaat gccagcctga
     2101 gtacggtgat tcaaaacaat ggattgtacg aaaggccaag cgatgcggca gcctatggag
     2161 cactggtgct ggccctgctt atttttattt ctgcgtgcct caatttttcg aatacaaccg
     2221 ttgcacaagc caacagaaga ctgaaggaaa taggcgttag aaaagtgctg ggcagttcgc
     2281 accggcaact catcaggcag ttgatgctgg agtcggcagt ggtggtggta gtggctatac
     2341 tgctttccat ggctttcaat agctggtggc tgcccacatt cagcgccatg ttcggaaact
     2401 tgtgggtgga agccaattac ctgaaggata ccaccctgca aattttcatg ctgctgttgt
     2461 ttgtcattac taccctgctg gcaggcatgt acccggcatt ttatgtaagc cgctttaatg
     2521 ctacttccat tttcaggggc aatgtaaaat ttggtgacag cagtttgttt tcccgcatca
     2581 tgttgggatt gcaattgtct attgccatta tcacagtaat agccggtgtg gcttttgcca
     2641 ggaattcgga ataccaacgc aagttcgact atggttataa cctcgaaagt tctatgggtg
     2701 ttgttttcaa tgattcatca agctacctgc cattgaaaaa tgaactggcc aaaattcctg
     2761 aggttacatc attgtcgggc accagaaatc atatcgcctt tggtttcaga acaccagtaa
     2821 tggaagcaga cggcctcaaa aaggaagctt gctacatgga ggtggg
//
LOCUS       DATIQF010000468         2338 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_129532,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000468 DATIQF010000000
VERSION     DATIQF010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2338
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129532"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..473)
                     /gene="thyA"
                     /locus_tag="VLL95_07735"
     CDS             complement(<1..473)
                     /gene="thyA"
                     /locus_tag="VLL95_07735"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: protein motif:HMM:TIGR03284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004799 - thymidylate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009265 - 2'-deoxyribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HSR38790.1"
                     /translation="MQQYHDLLRHIISNGVDKADRTGTGTRSVFGYQMRFNLEDGFPL
                     VTTKKVHLKSIIHELLWFIKGETNIAYLKENRVSIWDEWADAEGNLGPVYGKQWRSWT
                     GADGKTIDQLSWVVEEIKRNPDSRRLIVSAWNVADLPKMALMPCHNMFQFYVANG"
     gene            691..1323
                     /locus_tag="VLL95_07740"
     CDS             691..1323
                     /locus_tag="VLL95_07740"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HSR38791.1"
                     /translation="MKFRPLFAGLVLAGTLLSQTSQGQISIGAKGGLNVSNLSGVSDV
                     QGLESNALVGFHVGGYATFNLGRNFAIHPELVYSTQGAKLENATSSENLNLNYFNIPI
                     MVRFLTNKGFFVEAGPQFGFQVGDVDLGTIGQGSNFQNTVNNSDLAACVGLGFQPTKS
                     AFGIGARYNIGLGKAGEFDPNTSGNNVEYKNGVFQLSLYWRLLGGGKLKK"
     gene            complement(1378..1455)
                     /locus_tag="VLL95_07745"
     tRNA            complement(1378..1455)
                     /locus_tag="VLL95_07745"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1418..1420),aa:Val,seq:gac)
     gene            complement(1508..>2338)
                     /locus_tag="VLL95_07750"
     CDS             complement(1508..>2338)
                     /locus_tag="VLL95_07750"
                     /inference="COORDINATES: protein motif:HMM:NF013761.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HSR38792.1"
                     /translation="KVTGIARFGLLERIDELMHRSTNTLVKRYEWALQQLSADERNEW
                     QRVVDRMERICLEAAEQKIGVLIDAEETWIQDPVDALLAIMMDKYNRGRCLVYNTVQL
                     YRHDRLAFLRSMMEAAKERGFILGMKLVRGAYMEKERKRAEEMGYPSPIQADKQSTDN
                     DFNEAVQLCIDHLDQCSMILASHNEYSNKLAVELLQKKGLPLNHEHVHFSQLFGMSDN
                     ITFNLAKAGCNVSKYLPFGPIDEVIPYLMRRAQENSSVGGQTGRELLLIKKEMKRRGI
                     "
BASE COUNT          554 a          622 c          531 g          631 t
ORIGIN      
        1 ttaccattgg ccacataaaa ctggaacatg ttgtggcaag gcatcaatgc catctttgga
       61 aggtcggcca cattccaggc actcactatc aaacgccggc tgtcggggtt gcgttttatt
      121 tcttccacca cccaactgag ctggtcaatg gtttttccat cggctcccgt ccagcttcgc
      181 cattgcttgc catacacagg ccccaggttt ccctcagcat cggcccactc atcccaaatg
      241 cttacccggt tttccttcaa ataggcaata ttggtttcgc ctttgatgaa ccacaacagt
      301 tcgtgtatga tggatttcag atgcactttc ttggtggtca ccaatggaaa accgtcctcc
      361 aggttgaatc gcatttgata cccaaataca ctgcgggtgc cggttccggt gcggtcggct
      421 ttgtcaaccc cgttgctgat gatatgcctg agtaaatcgt ggtattgttg catggctgca
      481 agttattggc tttggccaac ggatgccatg ccggggcaat ttccatttcc acaacctgtg
      541 aacagttgaa ggcactgccc cctatcggtg cgattcaccg aacagaggtg actggtaggt
      601 aaacaggctt gccaacttta aattaacttt tggaatttca atatttcttt tacgaaggcc
      661 gtttataatt tgtaaatcaa aactttagtt atgaaatttc gccctctctt cgccggcctt
      721 gtattggcag gcactctcct ttctcaaaca tcccagggtc aaatttccat cggtgccaaa
      781 ggcggcctca acgtaagcaa cctcagtggg gtcagcgatg tacaaggcct tgaatcaaat
      841 gcactggtag gattccatgt aggcggatac gccaccttca accttggcag gaactttgcc
      901 attcaccctg aattggttta cagtacgcaa ggcgccaaac tggaaaatgc caccagcagc
      961 gaaaacctga acctcaatta tttcaacatt cccatcatgg taaggttcct taccaacaaa
     1021 ggattctttg tggaagcggg cccacagttt ggcttccagg tgggagatgt agacctgggc
     1081 accattggcc agggatccaa tttccaaaac acggtcaata attcagattt ggcagcctgc
     1141 gttggattgg gtttccagcc caccaaaagc gcttttggta ttggcgcccg ctacaatatt
     1201 ggcctgggca aggccggtga gtttgacccc aacacctctg gaaacaatgt tgaatacaag
     1261 aacggcgtgt tccaactcag tctgtactgg agattgctcg gcggcggtaa gttgaaaaaa
     1321 taatcaaccg cctcagcaga atgacaaaag gcatccaatg acggatgcct tttgttttgg
     1381 tgggtggtaa aggactcgaa ccttcgaccc ctgctctgtc aaagcagtgc tctaaaccaa
     1441 ctgagctaac caccctactc aagtacgaaa tacgaggtgg gaagtacgaa gtaagaaaat
     1501 acttctgtta tattcctcgt cttttcattt cctttttgat cagcaacaat tccctgcctg
     1561 tttggccgcc cacgctgctg ttttcctgtg ccctgcgcat gaggtaaggg atcacctcat
     1621 cgataggacc aaacggaagg tacttgctca cattgcatcc agccttcgcc aggttgaacg
     1681 tgatattgtc gctcatgcca aacaactggc tgaaatgaac atgttcgtga ttcaggggca
     1741 agcctttttt ctgtagcaat tccactgcca gcttattgct gtattcattg tgcgatgcca
     1801 ggatcatcga acattgatcg aggtgatcaa tgcagagttg caccgcttcg ttgaaatcat
     1861 tatcggtgct ttgcttatca gcctgtatgg gtgaaggata tcccatttcc tcggcccgtt
     1921 tgcgttcttt ttccatgtag gctccccgca ccagtttcat acccaaaatg aaaccacgct
     1981 ccttggcggc ctccatcatg ctgcgcaaaa aggccaggcg atcgtgccga tacaattgca
     2041 ccgtgttgta caccaggcag cggccccggt tgtacttgtc catcatgatg gccagcagtg
     2101 catccacggg atcctgtatc caggtttctt cagcatcgat cagtacgcct attttttgct
     2161 cggcagcttc caggcaaatg cgttccatgc gatctaccac ccgctgccat tcgttccttt
     2221 catcagcact cagttgttgc aaagcccatt cgtatcgctt caccagcgta ttggtgctgc
     2281 ggtgcatgag ttcatcaatc ctttccagca aaccaaaccg ggcaatgccg gtcacttt
//
LOCUS       DATIQF010000469         4081 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_281315,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000469 DATIQF010000000
VERSION     DATIQF010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4081
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281315"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..450
                     /locus_tag="VLL95_07755"
     CDS             <1..450
                     /locus_tag="VLL95_07755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38793.1"
                     /translation="CHYIDQKQYIPIRQSLDAVMQSADKIEDAQLDADKLTLATMLFV
                     RLKDETDQLIRNDRLVLFPLIEKEWEPGADHGPHLPLQMIREKNKKILNILDRLRQIA
                     NNYILKPEWSTETRLFFEELFGLDQMITQAIYLKENVLVPKLMKFND"
     gene            576..3002
                     /locus_tag="VLL95_07760"
     CDS             576..3002
                     /locus_tag="VLL95_07760"
                     /inference="COORDINATES: protein motif:HMM:TIGR01494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HSR38794.1"
                     /translation="MEQKTTAQLQCYHCGEAVTGPPIAYDDKSFCCAGCKTVYQVLNQ
                     HGLCEYYAQGDAPGINQRVAVRKDKFAFLENDTIRQQLIRFADAAQTQAVFYLPQMHC
                     ASCLWLLEHLQKLNPGIHYSRVDFPRKEVTVTFNEQQASLRAVAELLTSIGYEPHISL
                     NNLEQKPRNLFNRKRLYKLGVAGFCFSNIMLLSFPEYFGLEGMREQYDLTPVFRYLNL
                     LLSLPVLFYSASEFFQSGWAGLRNRFLNIDAPIALAILITFGRSVYEIVSGTGAGYLD
                     SMSGIVFFMLIGRFLQDRTQQSLSFDRDYTSYFPIAVNKLVEGKEIPTPLPDLHNGDS
                     VVIHSQEIIPADGILVRGEAAIDYSFVTGESIPVEKKISEIIYAGGRQVGGKIELLLV
                     KDVSQSYLTNLWNKESMRSEDSNTDSWVHPAARYFTAVLFTLTAIAAVYWFINDPTKL
                     WPAVTAALIVACPCSLLLSHSFTNGHVMRAFDRAGLYIRNASVIERMTRITHVVFDKT
                     GTLTDGQQFDVTAKGDTIDEQVEAILAAVSAQSHHPLSKAIHHYLDCPSHLPIEAMKE
                     YPGKGIEAWVNDRHVRFGSPAFVWGEDHFNQDTTVVAWSIDKQTNGLFLLKNHYRKGL
                     TGMLTRLRRRFNISVLSGDNDAEQGNIYQMVKQPAKVLFNQAPADKLAFIESLQQSGE
                     EVLMVGDGLNDAGALKVARVGIAVTDDINNFSPGCDAILEAARLKSLHQYLWMARRSK
                     QVVIASFVLSILYNIVGLSFAFQGLLSPLVAAILMPSSSISIIVLTWLGIESGRRRLK
                     DTGPVNSRKE"
     gene            3171..3326
                     /gene="ccoS"
                     /locus_tag="VLL95_07765"
     CDS             3171..3326
                     /gene="ccoS"
                     /locus_tag="VLL95_07765"
                     /inference="COORDINATES: protein motif:HMM:TIGR00847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HSR38795.1"
                     /translation="MAVILILLIASILVAGGFLVAFLISAKNGQFDDNFGPPLRMLYD
                     DEQPSNQ"
     gene            3346..>4081
                     /locus_tag="VLL95_07770"
     CDS             3346..>4081
                     /locus_tag="VLL95_07770"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HSR38796.1"
                     /translation="MQQPLERFAYDNKIVKAFAFVTVLWGLVGMLAGLLIAFQMAFPA
                     LNFDFAYTTFGRVRPVHTNAVIFAFVGNAIYMTVYYALPRLLKTSMWSSKLGWVHFWG
                     WQGIIVAAAVTLLSGITSGKEYAELEWPIDIAITLVWVVFGLNMFMTILQRRERHMYV
                     AVWFWIATWVTVAMLHIVNSFELPFSAFKSYSWYAGVQDALVQWWYGHNAVAFFLTTP
                     FIGVMYYFVPKAANRPVYSYRWSIVHF"
BASE COUNT         1040 a          988 c         1047 g         1006 t
ORIGIN      
        1 tgtcattaca tcgatcaaaa acaatacata cccataaggc aatcattgga tgctgtcatg
       61 caaagtgcag acaagatcga agatgcccaa ttggatgccg ataaactcac cctggcaacc
      121 atgcttttcg tgcggctgaa ggacgaaaca gaccagttga tcaggaatga caggctggtg
      181 ctctttccct tgattgagaa agagtgggag cccggtgctg atcacggccc gcacctgccg
      241 ctgcaaatga tcagggaaaa gaacaagaaa atattgaaca tactggacag gcttcgtcag
      301 attgcgaaca actacattct taaaccggaa tggagcacag aaacacgctt gttttttgaa
      361 gaattattcg gactggatca aatgatcacc caggccattt acctcaagga aaacgtgctg
      421 gtacccaaac tgatgaagtt taacgactga cttgaaacaa acaacagctg cgattgcagg
      481 ccattttttt gattggtgat tgaaaaagca aaccggcggc ctttttgaat atggctgctg
      541 gtttgttttt cgcgcagtaa aaaggaatcg agcccatgga gcaaaaaaca accgctcagt
      601 tgcaatgcta tcattgcggt gaagcagtta caggaccccc cattgcatac gacgataaat
      661 cgttttgctg cgccggctgt aaaacggtgt accaggtgtt gaaccagcat ggtttgtgtg
      721 aatactatgc gcaaggcgat gcaccgggca tcaatcaaag ggtagcggta cgaaaagaca
      781 agttcgcctt tcttgaaaat gacaccatcc gtcagcaact catacgattt gctgacgcag
      841 cacaaacaca ggcggtgttt tatttgcctc aaatgcattg tgccagctgt ctttggttgc
      901 tggagcactt gcaaaagcta aacccgggca ttcattacag ccgggttgat tttccgcgaa
      961 aagaagtaac agtaaccttc aacgagcagc aggcatcgct gcgtgccgtg gcggaactgc
     1021 tcaccagcat cgggtatgag ccgcatatca gcctgaataa cctcgaacaa aagccacgca
     1081 accttttcaa ccggaagcgt ttgtacaaat tgggggtagc aggcttctgc ttcagcaaca
     1141 tcatgctgct cagttttcct gagtactttg ggctggaagg catgcgggag cagtatgatc
     1201 ttactcctgt attccgttac ctcaatttgc tgctcagcct gccggttttg ttttacagcg
     1261 cttcggagtt ctttcaaagc ggttgggcag gcttgcgcaa ccggtttttg aacattgatg
     1321 cgcctattgc gctggccatc ctcatcactt ttggcagaag tgtgtatgaa atagtaagtg
     1381 gcactggagc aggatacctc gacagcatga gcggcatcgt atttttcatg ctcattggcc
     1441 ggttcttgca ggacagaaca cagcaatcac tcagctttga ccgggactat acttcctatt
     1501 tccccatagc agtaaacaag ttggttgagg gtaaggaaat acccacgcca ctgcccgact
     1561 tgcacaatgg cgacagcgtg gtcattcaca gccaggaaat catacctgca gacggcatac
     1621 tggttcgtgg cgaagcggcc attgattaca gctttgttac gggcgaaagc attccggtgg
     1681 agaaaaagat cagcgaaatc atttatgccg gcggcaggca ggtgggcgga aaaattgaac
     1741 tgctgctggt gaaggacgtt agccaaagct acctcaccaa cttgtggaac aaggagagca
     1801 tgcgcagcga ggactcaaac accgattcgt gggtgcatcc tgcggcccgg tactttaccg
     1861 ccgtattgtt tacgcttact gccattgcag cagtttattg gtttataaat gatccaacaa
     1921 aactgtggcc ggcagtcacc gcagccctca tcgtggcttg tccctgctcc ttgttgctaa
     1981 gtcattcgtt cacgaatggt catgtgatgc gggctttcga cagggcaggg ttgtacatcc
     2041 gcaatgcttc ggtgattgag cgcatgacga ggatcacgca tgtggtgttc gacaaaacgg
     2101 ggacgcttac cgacgggcag caatttgacg taactgcaaa gggagatacc attgatgagc
     2161 aggttgaagc cattttggcc gcagtatctg cacagtcgca ccatcctttg agcaaagcca
     2221 ttcaccatta cctggattgc ccgagtcatc tgcccataga ggcgatgaag gagtaccccg
     2281 gcaagggcat tgaagcctgg gtgaatgaca ggcatgtgcg gttcggcagc ccggcctttg
     2341 tttggggcga agaccatttc aaccaggaca ccaccgtagt ggcctggagc attgacaaac
     2401 aaacaaatgg cctttttctg ctaaagaatc attaccggaa aggccttacc ggcatgctca
     2461 ccaggttgcg tcgccgcttc aacatttcgg tattgagtgg tgacaacgac gccgagcagg
     2521 gcaatattta ccaaatggtg aagcaaccgg caaaagtgtt gttcaaccag gctcctgccg
     2581 ataaacttgc tttcatagaa tcgctgcaac aatcggggga ggaagtactg atggtgggcg
     2641 atggcttgaa tgacgccggc gcattgaaag tggccagggt gggcattgcg gtcaccgatg
     2701 atatcaacaa tttttctccg ggttgcgatg ccatcctgga ggcagcccgg ctgaaaagcc
     2761 tgcaccagta tttgtggatg gccaggcgca gcaagcaggt ggtcattgct tcgttcgttc
     2821 tttccatcct atacaatatc gtgggattgt ctttcgcatt ccagggtctg ttgtcgcccc
     2881 tggtggcggc cattctgatg ccatccagca gcatttccat cattgtgctt acctggctgg
     2941 gcatagaaag cggcaggcgc aggctgaagg atacaggccc ggtcaatagc aggaaggaat
     3001 aaaaggagcg ggtggctgaa aagcaattgt gacaaaaaca tgacaaaaat catttagcct
     3061 catgagtgct atcagcgcca ccggcaaccc atgaaaatag ttttgaaaat tatttgagcc
     3121 cataccacag caacgctcac ccattagatt aaaaccgcgt caatccatct atggcagtca
     3181 tattaattct actgatcgca agtattctgg tagcaggagg tttcctcgtt gccttcctga
     3241 tcagcgcgaa aaacggccag tttgatgaca acttcggccc gccgctgcgt atgctgtacg
     3301 acgacgaaca acccagtaat caataaacaa tcaattaata tcaccatgca acaaccgctt
     3361 gagagatttg cttacgacaa taagatcgta aaggcctttg catttgtaac cgttctatgg
     3421 ggactggtgg gaatgctggc aggtctgctt attgcctttc aaatggcatt tccggcactc
     3481 aacttcgatt ttgcttacac cacatttggc agggttcgcc cggtgcatac caatgcggtg
     3541 attttcgcat ttgtgggcaa cgccatttac atgacagtgt attacgcact gccccgattg
     3601 ctcaaaacat ccatgtggag cagcaagttg ggctgggtac acttctgggg ctggcagggc
     3661 attattgtgg ccgcagccgt tacccttctt tccggtatca cttccggtaa ggaatacgct
     3721 gaactggaat ggcccatcga tattgccatt acactggtgt gggtagtatt tggccttaac
     3781 atgttcatga ccattttgca gcgccgcgaa agacacatgt atgtggccgt atggttctgg
     3841 atcgctacct gggttaccgt tgcgatgttg cacattgtaa actcattcga acttcctttc
     3901 agcgcattca agagctatag ctggtatgcc ggcgttcagg atgcattggt acagtggtgg
     3961 tacggacaca acgcggtggc attcttcctg actacaccgt ttattggggt gatgtactac
     4021 ttcgtgccca aggctgccaa ccgccctgtg tacagctatc gttggagcat cgttcacttc
     4081 t
//
LOCUS       DATIQF010000470         2419 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_53499, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000470 DATIQF010000000
VERSION     DATIQF010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2419)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2419)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2419
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53499"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(107..292)
                     /locus_tag="VLL95_07775"
     CDS             complement(107..292)
                     /locus_tag="VLL95_07775"
                     /inference="COORDINATES: protein motif:HMM:NF039278.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5908 family protein"
                     /protein_id="HSR38797.1"
                     /translation="MPIEVRELVIKVNVNQPQQSGGEGSSTAAEIPASGKEPQSDKVV
                     ADAVEQVMDLLRNKNER"
     gene            complement(318..839)
                     /locus_tag="VLL95_07780"
     CDS             complement(318..839)
                     /locus_tag="VLL95_07780"
                     /inference="COORDINATES: protein motif:HMM:TIGR02241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HSR38798.1"
                     /translation="MASFPNPGGYYPPVGFHFKVEFPGLGNNNDSRFQSVSGLNLEFD
                     VENVKEGGENRFEHKLPGRAKYPDLSLKRGLLTNSDVIKWMLDALKNRTVKPTDVVIS
                     LLNEFHLPVMTWKLHNAWPRKWSVSDFNATENSVVVETLDLCYAYFDVEGQGIVSQGL
                     SAANSISNGGLNL"
     gene            complement(860..1288)
                     /locus_tag="VLL95_07785"
     CDS             complement(860..1288)
                     /locus_tag="VLL95_07785"
                     /inference="COORDINATES: protein motif:HMM:TIGR02241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HSR38799.1"
                     /translation="MATYPLPKFHFLVQWGGSKIGFTEVTGLDMQVEAIEYREGSSPV
                     YSKIKMPGLQKYSNITLKRGTFTGDQEFYSWIKTVNLNTVERRDITISLLNENHEPVI
                     TWKARNAFPVKVQASDMKADGNEVAIETLELAHEGLSTVS"
     gene            complement(1377..>2419)
                     /locus_tag="VLL95_07790"
     CDS             complement(1377..>2419)
                     /locus_tag="VLL95_07790"
                     /inference="COORDINATES: protein motif:HMM:NF037565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail sheath C-terminal domain-containing
                     protein"
                     /protein_id="HSR38800.1"
                     /translation="HCTTIDASATSDLKDGLDALEKADEPTLIVFPELATSGDTVAEI
                     NDLYDLALAQCAKLGDRFAIIDCAADSYDNLRHATNGIGMNNLKYGAAYHPFLKTALS
                     YYFADADVTISQTATGGTPPTPAFDAGTLAAIKTADLALYNQVVSKINDLKMTLPPSA
                     TIAGIYAAVDNSRGVWKAPANVSVTLVSGLTSTITNTEQDGMNVDVTAGKSVNAIRAF
                     AGKGILVWGGRTLAGNDNEWRYVSVRRFFNMVEESTKKATEPFVFEPNDANTWVKVQA
                     MIENFLTNLWRQGALQGAKPEHAFYVAVGLGKTMTAVDILEGKMIVEIGMAVVRPAEF
                     IILRFSHKMAES"
BASE COUNT          489 a          624 c          623 g          683 t
ORIGIN      
        1 taggtttcag ggttcagcaa ggcggtaaaa ctgccctgct cctcggtgta gtcggcgttg
       61 ctgaacgcaa cgatcttcag tttttccagt ttgccgcttg ccatggttat cgctcatttt
      121 tatttcggag taaatccatc acctgctcta ccgcatccgc cactactttg tccgactgag
      181 gttccttgcc agatgccggg atttccgcgg cggtgctgct gccttcgcct ccgctttgct
      241 gtggttggtt cacgttcacc tttatcacca gttctcttac ttcaatgggc atgttgattc
      301 aattaagtga ggtgtattta caaattcaat ccgccattag agatgctgtt ggctgcactc
      361 aacccctggc ttacgatgcc ctgaccttct acgtcgaaat aggcatagca caggtcgagt
      421 gtttcaacta ccacactgtt ctcagtggcg ttaaaatcac tgacactcca tttgcggggc
      481 catgcgttat gcaatttcca ggtcatgacg ggcaggtgaa attcattgag caggctgatg
      541 acaacatcgg tgggtttgac agtcctgttt ttgagggcgt ccagcatcca cttgatcacg
      601 tcgctattgg tgaggaggcc gcgtttcaaa ctcaagtcgg ggtatttggc ccgaccgggc
      661 agtttgtgtt caaaccggtt ctcgccgcct tccttcacat tttctacatc aaactccagg
      721 ttcagcccgc taacactttg aaaacggctg tcgttgttgt tgcccaggcc gggaaactcc
      781 actttgaaat gaaaaccaac cggcggataa tatccgcccg ggttcgggaa tgatgccata
      841 tcctgctggg gttgaatgat tagctaactg tgctcaggcc ttcatgggcc agctcaagcg
      901 tttcgatggc cacttcgttg ccgtcggctt tcatatcact ggcctgcacc ttcaccggaa
      961 aggcgttgcg tgctttccag gtgatgacag gttcgtgatt ttcattgagc aggctgatgg
     1021 tgatatcgcg tctttccacg gtattcaggt tcactgtttt tatccagctg tagaattcct
     1081 ggtcgccggt aaaggtgccc cgcttcaggg tgatgttgct gtacttctgc aaaccgggca
     1141 ttttgatttt tgaatagacc gggctgctgc cttcgcggta ttcaatcgct tccacctgca
     1201 tatcaagacc ggtgacctcg gtgaatccta ttttgctgcc gccccattgc accaggaaat
     1261 gaaactttgg taagggatat gttgccatac tattgattgt ttgaatgttt tgaaaaggtg
     1321 ttgaacggaa tgctgctgtg ctgccgccat taacggctca tgctgcatgc accgggtcag
     1381 ctctccgcca ttttgtggct gaacctgagg atgatgaatt ctgccggacg cactactgcc
     1441 atgcctattt ccacaatcat ttttccttcc agtatgtcca ccgctgtcat ggttttgccc
     1501 aggccaacgg ctacataaaa tgcatgttcg ggtttggcgc cctgcaaagc accctgccgc
     1561 cacaggttgg tgaggaagtt ttcgatcatg gcctgcactt ttacccaggt gtttgcatca
     1621 ttgggttcaa acacaaaagg ctctgtggct ttcttggtgc tttcttccac catgttgaag
     1681 aaccgtcgaa cacttacata gcgccattca ttgtcgttgc cggccaatgt gcgtccaccc
     1741 cataccagga tgcctttccc ggcaaaagca cggatcgcgt tgactgactt tccggcggtc
     1801 acatccacgt tcatgccatc ctgttcagta ttggtgatcg tacttgtgag cccgctcacc
     1861 agtgttacgc ttacattggc aggcgctttc caaacaccgc ggctgttatc gacagcggca
     1921 taaatgccgg caatggtagc agatggcggc agtgtcattt tgaggtcgtt gatttttgac
     1981 accacctggt tgtacaaagc gaggtctgcc gttttgatgg ctgccagtgt gcctgcatca
     2041 aaagcaggtg tgggtggcgt accgcctgtt gctgtttgcg aaatggtcac atcagcatcc
     2101 gcgaaataat agctgagcgc tgtcttcagg aagggatggt aggctgcacc gtacttgaga
     2161 ttattcatgc caatgccatt ggtggcatgt cgcaggttgt cataggaatc tgcggcgcaa
     2221 tcgatgatgg caaagcggtc gcccagtttg gcacattgag ccagcgccag atcgtataga
     2281 tcattgattt ctgccaccgt gtcgccactg gtggcgagtt cggggaatac gatcagcgta
     2341 ggttcatcag ccttttccaa ggcatccagc ccgtctttca gatcgctggt ggcagaggca
     2401 tcaatggtgg tgcaatgtg
//
LOCUS       DATIQF010000471         2006 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_23159, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000471 DATIQF010000000
VERSION     DATIQF010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23159"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(59..1705)
                     /locus_tag="VLL95_07795"
     CDS             complement(59..1705)
                     /locus_tag="VLL95_07795"
                     /inference="COORDINATES: protein motif:HMM:NF026255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR38801.1"
                     /translation="MGIIVGSVLDSANNKALLGATVTLTKMQAGSKPAVLVTNADGYF
                     SYYNLSFGYYSLQISSIGFASLKLDSIFLRAERYDFNLGDLKLVTKAGELQNVVVYVE
                     KPLLENKDGKVTFNAGESALSAGSTTADMLKTLPLISNDPNGKILLRGKEPRILIDDK
                     PVDLNGQQLADLLESLPGGSIERIELMQNPPPEYGTDAGGVINIVTKKGKVGFTGRLN
                     VSAGTRGEANLGANLGYRTSKWNISGTVNTGASLLLGYNNSYRNNYFTDSTNQFITEG
                     NFENRNIRPNIRLQVDYDYSKRHQFSLVLQTNNNWFDNESNTAFKNINRFGELWRLSV
                     RNIASQGHGPNVNPQFTWDWKSKRQGENFRLVSSISVGEYYNDRNFFQRFLDPVSQQP
                     SGLDSFQRQITENKYLNTQLRFTYNRPLVDKVLYLNTGAGVTTTHNDNNLASSYLDKG
                     ANEWLTAPLLSNSFVFDQQVYYLRSGLTWQMKEGWRLVAYVQPEWTAYNLVNKGITVS
                     ASNQYINWLPGFNIRKELNKEHNLALVYRKSIRRPPAGCR"
     gene            complement(1786..>2006)
                     /locus_tag="VLL95_07800"
     CDS             complement(1786..>2006)
                     /locus_tag="VLL95_07800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38802.1"
                     /translation="IFLVPFFAKRVKGNAVFWAAVVTQVCIITIYRMDIVSFLWLNVI
                     GALLLWVLAWVLQIFANWQIRQSASNLR"
BASE COUNT          505 a          491 c          462 g          548 t
ORIGIN      
        1 gttttgggcg acccagaaga tgtcagccgt gatttccagc gcgcggaaaa cgtttatttt
       61 atcggcagcc ggctggcggc ctccttatgg atttgcggta aaccagcgcc aggttgtgct
      121 ctttgttgag ttctttgcga atgttgaagc cgggtagcca atttatatac tggttgctgg
      181 cagataccgt tattcctttg ttcaccaggt tgtatgcagt ccattccggc tgcacataag
      241 ccaccagtcg ccagccttct ttcatttgcc aggtaaggcc gctacggagg taatagacct
      301 gctgatcaaa aacaaaacta ttggaaagca atggcgccgt cagccattca ttcgcgcctt
      361 tgtcgagata cgaactggca agattgttat cgttgtgagt ggtggttact cctgcacctg
      421 tgttcaggta aagcactttg tccaccaatg gcctgttgta agtaaacctt aactgcgtat
      481 tgaggtattt gttttcagtg atctgccttt gaaatgaatc gagccccgat ggttgctgcg
      541 aaacgggatc aagaaatctt tgaaagaaat tcctgtcgtt gtagtattca ccaacactta
      601 tgcttgaaac caaacggaaa ttctccccct gcctttttga tttccagtcc caggtaaact
      661 gtggattgac attaggcccg tgtccttgtg atgcaatgtt ccttacgctc agtctccaca
      721 actcaccaaa acggttgata ttcttgaagg cagtgttgga ttcgttgtca aaccagttgt
      781 tgttggtttg caacaccagg ctgaactggt gtctcttgct gtaatcataa tccacctgca
      841 accttatgtt cgggcggata ttcctgtttt caaaattgcc ttctgtaatg aactggttag
      901 tactatcggt gaagtaatta ttacgatagc tgttgttata tccgagcagc aggctcgctc
      961 ctgtattcac cgttccgctt atattccatt tgctggtacg ataaccgagg ttggcgccca
     1021 aattggcttc cccccttgta ccggcactca cattcaatcg gcctgtgaat cccactttcc
     1081 cttttttggt cacaatgttg atgacaccac ccgcatccgt tccatattca ggaggaggat
     1141 tttgcatcag ctcaattctc tctatcgaac cgccgggaag gctttccaac aggtcagcaa
     1201 gttgttgccc attcaggtcc accggtttgt catcaatcaa aatgcgtggc tccttgcccc
     1261 gcagcaaaat ctttccattc ggatcgttgc tgatcaatgg cagtgtcttc agcatatcgg
     1321 cagtggtgct gcccgcactc agtgctgatt caccggcatt gaaagtgact ttgccgtcct
     1381 tgttttcgag caaaggcttt tcaacataca cgactacatt ttgcagctcg ccggcttttg
     1441 taaccagctt caaatcaccc aagttgaaat cgtagcgttc tgcacggagg aaaatactgt
     1501 ccagcttcag cgaggcaaac cctattgaag aaatctgcag ggaataatag ccaaatgaaa
     1561 gattatagta ggagaagtaa ccatcagcat tggtcactaa aaccgcaggt ttggaaccgg
     1621 cctgcatttt ggtaagcgta acggtggcgc cgagcaatgc tttgttattg gcagaatcca
     1681 aaacagatcc aacgataatg cccacaggtt gagattgccc ataggactgc gccatgaaaa
     1741 tgatgcaaag gaccagtgtg aaaaatgcct tcaaaaggtt ggttgttacc tgagatttga
     1801 cgccgactgg cgaatttgcc agtttgcaaa tatctgcaat acccaggcaa gcacccacag
     1861 cagcaaggcg ccaatcacat tcagccataa aaaagacacg atgtccatgc ggtaaatggt
     1921 gatgatgcaa acctgcgtga caacagccgc ccagaaaacg gcattgcctt tcacccgctt
     1981 cgcaaaaaag ggaaccagga agatgc
//
LOCUS       DATIQF010000472         6787 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_129577,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000472 DATIQF010000000
VERSION     DATIQF010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6787
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129577"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..674
                     /locus_tag="VLL95_07805"
     CDS             <1..674
                     /locus_tag="VLL95_07805"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HSR38803.1"
                     /translation="VRQSRQLPDLADFTISQLGIEWELNETDYRYNPRKGWQALVTGM
                     GGVKNIKKNADILALKDPGFDFASLYDSLKLTTYQLRLKGSVARYFPLGRQATLKTAA
                     QAGWLQSSNFFRNELFQIGGFKLLRGFDEESIFARGYMVGTAEFRYLTATNGYLFAFT
                     DVGWARYDDELLSFSHTYWGGGLGIHFQTRNSVVNLSWAVGKRNDLPFDVRQSKIHLG
                     IVNFF"
     gene            728..1678
                     /locus_tag="VLL95_07810"
     CDS             728..1678
                     /locus_tag="VLL95_07810"
                     /inference="COORDINATES: protein motif:HMM:NF025459.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4271 domain-containing protein"
                     /protein_id="HSR38804.1"
                     /translation="MAQLTCLWKGNLLALLLLLASGLPLLAQDSLLVKDSSTTAKSDT
                     ITTTASVDTSFVRPAAPAIATVRQPDTTLAFFNRLNPYLGIQGALYYRLEKPFQPLSK
                     DALFYWLAGAVLFLGIVRVGFSKYFSDMLRMFSQSSFRQKSIRDQLQQNRLASLLMNC
                     FFFFSAGTFLYQLGQFKGWFASDLSWWMQSLLCIGFVAAVYMVKYLTIGLSGWLFGLS
                     ELADTYTFMVFLVNKIIGIMLLPASISLALGVADLQSVMVVASLFGLGFLFLYRYVLA
                     IPMLRQHLRVIPFHFFIYFCAFEIVPVLLIYKWMLSFVNQ"
     gene            1713..2516
                     /locus_tag="VLL95_07815"
     CDS             1713..2516
                     /locus_tag="VLL95_07815"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HSR38805.1"
                     /translation="MSTTGAKSGHKTAKKPLQILITQPRPASDKSPYYELERKYGVQL
                     EFQPFIVLEPIPAKEFRRQKIDIGSFTAVIFTSRNAIDHFFRICEEMRLNVSQDTKYF
                     CITEAVALYLQKFILYRKRKVFYGADGTNKSLFDVINKHKENERFLYPCSENQQDNEI
                     VNWLKNNKVEFATPYMYRSISADVKDLLTSKEFDVICFFTPSGVKSLFDNVPNFNQNG
                     TFIGGFGNNTLKAIEESGLNLHIKAPLPESPSMITALDRFLATKEGGKK"
     gene            2632..4725
                     /locus_tag="VLL95_07820"
     CDS             2632..4725
                     /locus_tag="VLL95_07820"
                     /inference="COORDINATES: protein motif:HMM:NF015168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HSR38806.1"
                     /translation="MANRLQHETSPYLLQHAHNPVDWYPWGPEALQKAREENKLIIIS
                     IGYSACHWCHVMERESFEDPATAEVMNNNFVNIKVDREERPDLDQVYMDAVQAVTGSG
                     GWPLNVFLTPEAKPFYGGTYFPPVRAYNRSSWREVLHAIHSAWRDKPQEILSQAENLT
                     EHIRNASLFGSIITATPSFGQEQLAQIGMAILKSADKQWGGFGQAPKFPQTMSIQWLL
                     RQYHYFNQYGAPADLPFGKEELLRQALLSLDKMMDGGIYDHLGGGFARYSTDAQWLVP
                     HFEKMLYDNALLVNVFSEAFQLTKQERYKNVIRETMDFVLGAWQSEEGGFYSAFDADS
                     EGEEGKYYTWSREEIHSLLPDAEMARVFCDYYDVSDQGNWEGTNILWVREELTSFCKT
                     RGYNQEIVSQQLLSARQLLLRHRNSRIRPLLDDKKLLGWNALMITACCKAANALELPS
                     YLERAQQAVDFIENCMRDGDGNYFHNEKNGKAANPAFLDDLAYYAEALCHLHQATGDN
                     ALILRARVILEKIIANFSDEEGVYFYYTNASQTDILLRKKETYDGATPAANSVMVWVL
                     HYLGIVFDQPAWQERATLLLTQVEKTAIRYPNSFGNWAQMMQQMAYGTWELAIVGPNG
                     IALGREVLKEFIPNKVLVSSLEPDIAYPLLRGKKPGLGQTLIYACRQYACEAPVDSVA
                     ALWRQMSSQPGGLAG"
     gene            4919..6220
                     /locus_tag="VLL95_07825"
     CDS             4919..6220
                     /locus_tag="VLL95_07825"
                     /inference="COORDINATES: protein motif:HMM:NF015722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="HSR38807.1"
                     /translation="MKQQIFQLTAVSLLALSVVSCGKSGKTKGGLPNDGQVHGVAPSA
                     KPGLTKPLGMVYVPPGTFHMGPSDEDVTYALTARNKQVSIQGFWMDATEITNNQYRQF
                     VYWVRDSISAKILGYVKNVDGVDYVDWAKARTIKYNDKATIEKLDPIIIPPPDRIYGK
                     KEIDPEKIEYQVEYFDLKEAAKLENKNRPRSAFLVKYKEKIYPDTLVWMRDFSYSYNE
                     PMTKKYFTHFAFGNYPVVGVSWKQAEAFCRWRTNYLNSFLDSKKKSTESDFRLPTEAQ
                     WEYAARGGRSQAPFPWGGMYLRNRKGCILANFKPGRGNYPEDGGFYTVRADAYWPNDF
                     GLYCMAGNVSEWTSSLFYEGSYNFQHDMNPDVRYNAKDSDPPRMKRKVVRGGSWKDVG
                     WFLQTSSRAYEYQDTSKSYIGFRTVIDLPVFGQGGKSSKGK"
     gene            6358..>6787
                     /locus_tag="VLL95_07830"
     CDS             6358..>6787
                     /locus_tag="VLL95_07830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38808.1"
                     /translation="MAGVSRRTEVIVNVVVCVGAAIVLIGAWSKLLHKPWADIMLTVG
                     LLTEAFIFAVYAFLPPPYSAPPPAMVAGESGNPALKSLDKMLQEADITPTNLQKLSAG
                     FSKLGTTVDKMGEIGDVVKSTGDFSANAKSAADALSQVKGA"
BASE COUNT         1744 a         1598 c         1682 g         1763 t
ORIGIN      
        1 ccgtaaggca gtcgaggcaa ttgcccgacc tggctgattt taccatcagc caattgggta
       61 tagaatggga actgaatgaa acagactatc gctacaatcc acgcaagggt tggcaagccc
      121 ttgtgacagg aatgggagga gtgaagaaca ttaaaaagaa tgcagatatc ctggctttga
      181 aagaccccgg gtttgacttt gcctctttgt atgattccct gaagttgacg acctatcaac
      241 ttcggctgaa aggttctgtg gcgcggtatt ttcctttggg ccgacaagcg accctgaaaa
      301 ctgctgcaca ggctggctgg ttgcaaagca gcaatttttt ccggaacgag ttgtttcaga
      361 ttggaggttt caagttgctg cggggttttg atgaagaatc catttttgca agggggtata
      421 tggtgggcac tgcagaattc cgttatctca ctgccaccaa tggctatctt tttgccttta
      481 ccgatgtggg ttgggcccgt tacgatgatg aactgttgag ctttagtcac acttattggg
      541 ggggaggttt gggtattcat ttccaaaccc gcaattctgt tgtgaacctg agctgggctg
      601 taggaaagcg aaatgatctg ccatttgatg tgcgccaatc gaaaatccac ctgggcattg
      661 tgaacttttt ctgaacagca gtgattttct tattctggca aagggccaga aaggtaaatt
      721 tgcccccatg gctcaactaa cctgtttatg gaaaggcaat ttgctggcat tgcttttgct
      781 gctggcaagt gggttgcctc ttttggcaca ggatagtctt ttggtaaagg acagttcgac
      841 cactgcgaaa tctgatacca ttacaaccac tgcctccgtt gataccagct ttgtccgacc
      901 agctgcgcct gccattgcaa cagtaagaca accagatacc acactcgctt tctttaaccg
      961 gttgaatccg tacctcggca tacagggggc attgtactac cggttagaaa aaccatttca
     1021 acccctttcg aaggatgctt tgttttattg gcttgccggt gctgttctct ttctcggcat
     1081 agtgcgggtg ggcttttcca agtacttcag cgatatgctc cgcatgttca gccagtcctc
     1141 attcaggcaa aaatctattc gcgaccaatt gcagcaaaac aggctggctt cgctgctcat
     1201 gaattgtttc ttcttttttt ccgcgggtac ttttttgtac cagttgggcc aattcaaagg
     1261 atggtttgcc agcgacctga gttggtggat gcagtcactt ttgtgcatcg gtttcgttgc
     1321 ggcggtctac atggttaagt acctcaccat cgggttgagt ggctggctgt tcgggctgtc
     1381 cgaattggcc gacacgtaca ctttcatggt tttcctggtg aacaagatca ttggcatcat
     1441 gctcctgcct gcctctattt cactggcact gggcgtagct gatttacagt cggttatggt
     1501 agtagccagt ctttttgggc taggattttt atttctgtac cggtatgttc tggccatacc
     1561 catgctccgg caacatcttc gcgtaatccc cttccacttt tttatatact tttgcgcttt
     1621 cgaaattgta cctgttcttt tgatttacaa atggatgttg tcatttgtca atcagtaaca
     1681 gtagttttgt atcgcaacca ttgtgaaacc acatgagcac aaccggagca aaaagcggcc
     1741 ataaaacagc caaaaagccc cttcaaattc tgattactca acccaggcca gcctcagata
     1801 agtcgcctta ttatgagctg gaaagaaaat atggggtcca gcttgaattt caacctttca
     1861 ttgtgctgga gccaattcct gccaaagaat tcaggaggca gaaaattgac atcgggagtt
     1921 ttacagcagt catcttcacc agcagaaacg ctatcgatca tttcttccgt atttgcgaag
     1981 aaatgcgatt gaacgtgagc caggatacca agtatttctg tatcaccgag gctgtggctt
     2041 tgtatttgca gaagttcatt ttgtaccgca agcgcaaagt gttttacggg gcagatggca
     2101 ccaacaaatc gttgtttgac gttatcaaca agcataagga aaacgaaagg tttctgtacc
     2161 cctgcagcga aaaccagcag gacaatgaaa tcgtgaactg gttgaagaac aacaaggtgg
     2221 agtttgcaac cccttacatg taccggtcta ttagcgccga tgtaaaggac ctgcttacca
     2281 gcaaggagtt cgatgtgatt tgcttcttca cccccagtgg cgtaaagagc ttattcgata
     2341 atgtgcccaa cttcaaccag aacggcactt ttattggggg tttcggcaac aatacactga
     2401 aggccattga agaatcagga ctgaatttgc atattaaggc ccctttgcct gagtctccca
     2461 gcatgatcac tgcgctggat cgctttttgg ccaccaaaga aggtggaaag aaatagacca
     2521 atccgttaaa acaagattta agcaccggcc aaactggccg gtgtttgttt ttcgggattc
     2581 ataaaggtct tcgcgccaga acggtgacct ttgtgccttc aacttttttg catggccaac
     2641 agactgcagc acgaaaccag cccctacctt ttgcaacatg ctcacaaccc ggtggattgg
     2701 tatccgtggg gaccggaagc acttcaaaag gccagggagg aaaacaaact cattataatt
     2761 agtatagggt actctgcctg ccattggtgc catgttatgg agcgggagag ctttgaagat
     2821 ccggcaacgg ccgaggtcat gaacaacaat tttgtgaaca tcaaagtgga cagggaagaa
     2881 cgtcccgacc ttgaccaggt ttacatggat gcggtgcaag ctgtcaccgg cagcggcgga
     2941 tggccactca atgttttttt gacaccggaa gcgaagccct tctacggcgg cacctatttt
     3001 cctcctgtgc gtgcctataa ccgaagcagt tggcgcgaag tgcttcatgc catccacagc
     3061 gcatggaggg acaagccaca ggaaatcctg tcgcaggcgg aaaacctgac agagcatatt
     3121 cgcaatgcca gcctgtttgg ttccatcatt actgcaactc catcatttgg ccaggaacag
     3181 ctggcacaga ttgggatggc catcctaaag tcggccgaca agcagtgggg aggctttggc
     3241 caggccccaa agtttccgca aaccatgagc attcaatggt tgctgaggca gtaccattat
     3301 ttcaaccaat acggggcgcc agccgacctg ccctttggca aggaagaact gctgcgacag
     3361 gcgctcctca gcctggacaa aatgatggac gggggcattt atgatcacct gggaggaggc
     3421 tttgcccggt acagcaccga tgcccaatgg ctggtaccac attttgaaaa aatgctttac
     3481 gacaatgctt tgctggtaaa tgttttcagt gaggctttcc agttgacaaa acaggaacgg
     3541 tacaaaaatg tcattcgcga aaccatggat tttgtactgg gagcatggca gtcggaggaa
     3601 ggtggatttt acagcgcatt tgatgcagac agcgaagggg aagaaggaaa atactatacc
     3661 tggagcaggg aggaaatcca ttccctgttg cctgatgccg aaatggctcg agtcttttgt
     3721 gactactatg atgtttcgga tcagggcaat tgggagggca ccaatatcct ttgggttcgg
     3781 gaagagctga cctcattttg taagactcgc ggttataacc aggaaatcgt atcgcaacag
     3841 ttgttaagtg cccgccagtt gctactgcgt caccgaaatt cccgcatcag gccactgttg
     3901 gatgacaaaa aactgttggg ttggaatgca ttgatgataa ccgcctgctg caaagcggcc
     3961 aatgccttag aattgccttc ctaccttgaa agggcgcagc aagccgtcga ttttattgaa
     4021 aattgcatgc gggatgggga cggcaactat ttccacaacg aaaagaacgg caaagctgcc
     4081 aacccggcat ttttggatga cctggcctat tatgccgagg cgctctgcca tctccaccag
     4141 gccaccggcg ataatgctct cattcttcgt gccagggtca tactggaaaa aatcatcgcg
     4201 aatttttccg atgaggaagg tgtttatttc tattacacca acgcatcgca gactgatatt
     4261 ttgttgcgga aaaaagaaac ctatgacggg gctacccccg cagccaatag tgtgatggta
     4321 tgggtattgc attacctggg cattgttttc gaccaaccgg cctggcagga gcgggctacc
     4381 ctacttttga cacaggtaga aaaaacagcc attcggtatc ccaacagttt cggcaactgg
     4441 gcccagatga tgcaacaaat ggcctatgga acctgggaac tggccattgt gggcccgaat
     4501 ggcattgccc tgggacgaga ggtcttgaaa gaatttatcc ccaataaagt cctggtgagc
     4561 agcttggaac ccgacattgc ctaccccctg ctcaggggca aaaaacccgg attagggcag
     4621 accctcatct atgcttgccg gcaatatgcc tgtgaggctc cggttgattc agtagccgct
     4681 ctctggcggc aaatgagcag tcaaccaggg ggtttggcgg gctagatccc ccaaattttt
     4741 tttggccagc caataatacg ccgcaataaa tggcgtttac atgcgttttt gtatccacag
     4801 gttgtgagca actaacccac aggcctgaaa caggtaaaat ttattttgcc gcggttgggg
     4861 aaaactgcga aaccaattcc cctacttttg ggcgctttta atcgtcgttg tgatcaaaat
     4921 gaaacaacaa atttttcaac ttacagccgt atcgcttctg gcgttgagtg tagttagctg
     4981 cggcaaatcg ggcaaaacca aaggtggcct tcccaatgac gggcaggttc atggcgttgc
     5041 tccttctgcc aagccaggat tgacgaagcc actgggaatg gtctatgtac caccgggcac
     5101 ttttcacatg ggccccagcg atgaggatgt tacctacgca ctcactgcca ggaacaagca
     5161 agtttccatc cagggtttct ggatggacgc caccgagatt accaacaacc agtaccgcca
     5221 gttcgtgtat tgggtgcggg actcgatatc tgccaagata cttggctacg tgaagaacgt
     5281 agacggagta gactatgtgg attgggcgaa ggctcgtacc atcaagtaca acgacaaggc
     5341 aaccatcgaa aagcttgatc ctattattat tcctcctcct gaccgcattt atggcaaaaa
     5401 ggaaatcgat cccgaaaaga tcgaatacca ggtggagtac tttgacctga aggaagcggc
     5461 gaaactggaa aacaaaaaca ggccccgcag tgctttcctc gtgaaataca aggaaaaaat
     5521 ctatcccgat acattggttt ggatgaggga tttctcctat agctacaacg aaccaatgac
     5581 caagaagtac ttcacgcatt ttgcctttgg caactaccct gtagtgggtg tgagctggaa
     5641 gcaggcagaa gctttttgca ggtggagaac caattatctc aatagtttcc ttgacagcaa
     5701 gaagaaatct acagaatctg atttccgcct gcctaccgaa gcccaatggg aatatgcagc
     5761 aagaggtggc cgttcacagg caccgtttcc ctggggtggt atgtacctgc gcaatcgcaa
     5821 gggatgcatc ctggccaact tcaagcccgg acgtggtaat tacccagagg atggtggatt
     5881 ctatactgtt cgtgccgatg cttactggcc caacgatttc ggattgtact gcatggccgg
     5941 caacgtgtcg gagtggactt cctctctctt ctatgaaggc agctacaatt tccagcacga
     6001 catgaaccct gatgttcgtt acaatgccaa agattctgat cctccccgca tgaagcgtaa
     6061 ggtggtaaga ggcggcagtt ggaaagatgt gggttggttt ttgcaaacca gctcaagagc
     6121 ttacgaatac caggatacct ccaagtccta tatcggcttc cgtactgtga ttgacctgcc
     6181 tgttttcgga caaggaggaa aatcatcgaa gggtaaataa cctttattcc gattgctcat
     6241 tgaattttca gtaaaaaatc aatcatgcat tatgcccgtt accgggctat gtgcatgtca
     6301 atcgttccta gtcttatacc cactatacta acctcttaaa aactaaaatc aatttttatg
     6361 gctggtgttt ctagaagaac cgaagtaatt gtaaacgttg tggtttgtgt tggagccgca
     6421 atcgttctta tcggtgcatg gtcaaaactg ttgcataaac cctgggcaga tattatgctt
     6481 actgtaggct tgcttactga agctttcatt ttcgcggtat acgcattcct gcctcctcca
     6541 tattctgcac cgcctccagc tatggttgcc ggcgaatcag gaaatcctgc tctgaagtct
     6601 ttggacaaaa tgctccagga agctgatatt acccctacca atctgcaaaa gttgagcgct
     6661 ggtttttcta agcttggtac tactgtagac aagatgggcg aaataggtga tgtggttaaa
     6721 agcaccggcg atttttcagc aaatgcaaaa tctgccgccg atgcgcttag ccaggtgaaa
     6781 ggtgcca
//
LOCUS       DATIQF010000473         1658 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_7919, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000473 DATIQF010000000
VERSION     DATIQF010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7919"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1658
                     /locus_tag="VLL95_07835"
     CDS             <1..>1658
                     /locus_tag="VLL95_07835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38809.1"
                     /translation="YLDEQERLTRTNLIGIGIVCGLEAYVDNAGTSIKVSKGVGVTSA
                     GYLVAMPAAHYTHFGAYNAEKETYYDKFVEPSTKKQRFPLWQLAKAGEPQAEKELSKS
                     FLADKIILVFVELLKSGNKNCDPDSCDDKGITVDVQFKVLLVEEKNVGGLIGAKSEDG
                     AFTSGPKCLGWPELKLPRYNVPATTLPDSASILKGYLAIMKESFLQQVEDTLTKAYAS
                     TQLLVANDLPQNPFSQLTEKLSFLYDGTINLNQLVMVQYYYDFISDLLQGYEELRSIC
                     NRYLALCCPDEKLFPRHLLLYAAFPTNKVYRHRFIPSPALNAGDGLVNEMRFLMRRLG
                     SLVQMVQIPPVLPASAKRKQAEVRITPSKLGDVPLSQKAIPYYYDVFDNPALFNQWNY
                     QKTAAGKGNTNLSYYAAEYNSVDEHVRFPLRFDIEPYNFFRIEGHIGKPWQNAFQEIY
                     KIKYNHRLPFEVVALNGDFKSLLAFAQQSIADLGKVLAEHPEQWRKILCYFSDIEMQY
                     DMQAAELRCTIGKVMKFLYDYKTEQTAGNAGAVPQSTLLQQFDP"
BASE COUNT          458 a          448 c          397 g          355 t
ORIGIN      
        1 actacctcga cgaacaggag cgcctcaccc gcaccaacct cattggcatt ggcattgttt
       61 gtggtttgga agcctatgta gacaatgccg gcaccagtat taaagtgagc aagggggtag
      121 gtgtaaccag cgccggatac ctggtagcca tgccagccgc ccactataca catttcggcg
      181 cctacaatgc cgaaaaagaa acctactacg acaaatttgt ggagccttcc actaaaaagc
      241 aacgcttccc cttgtggcag ttggcaaaag ccggcgagcc acaggcggaa aaagaattga
      301 gcaaatcatt tcttgccgat aagatcatcc tggtatttgt ggaactgttg aaatcgggga
      361 acaagaattg cgaccctgat agttgtgacg acaaaggcat tacggtggat gtacaattca
      421 aagtgctgct ggtagaagag aaaaatgtgg gtggattgat cggcgccaaa agcgaagacg
      481 gtgctttcac ttcagggccg aaatgcctgg gctggcccga actgaaactg ccacgctaca
      541 atgtaccggc cactacactg cccgattcgg ccagcattct gaaaggatac ctggccatca
      601 tgaaagaatc gtttttgcag caggtagaag acacgctgac caaagcctat gcatccacgc
      661 agttgctggt agccaacgat ctcccgcaaa atccattcag ccagctcacc gaaaaactct
      721 ccttcctgta cgacggcacc atcaacctca atcaattggt gatggtgcag tattattacg
      781 acttcatcag cgacctgctg caaggctatg aagaactgcg ctccatttgc aaccgctacc
      841 tcgccttgtg ctgccccgat gaaaagctgt tcccacgtca cttgttgtta tacgcggcct
      901 ttcccaccaa caaagtatac aggcatcggt tcattccctc accggccctc aatgccggtg
      961 acggcctggt aaacgaaatg cgtttcctga tgcggcgcct gggcagcctg gtacaaatgg
     1021 tgcagatacc gccggtgttg ccagcctctg ccaaacgcaa gcaggccgaa gtgcggatca
     1081 cacccagcaa actgggcgac gttccactga gccagaaagc cattccctac tattatgatg
     1141 tattcgacaa cccggcgctt ttcaatcaat ggaactacca gaaaaccgct gccggaaaag
     1201 gaaacacgaa cctgagctac tatgctgcag agtataatag tgttgatgaa catgttcggt
     1261 tccctttgcg cttcgacata gagccttaca atttcttccg catcgaggga cacataggaa
     1321 agccctggca aaatgccttc caggagatat acaaaatcaa atacaaccac aggctgccct
     1381 ttgaagtagt agcgctgaat ggcgatttca aaagcctgct ggcctttgcc caacaaagca
     1441 tagcagacct tggcaaggtg ctggctgagc atcccgaaca atggcgcaag atcctttgct
     1501 atttcagcga catagaaatg cagtacgata tgcaggcggc tgaattgcgc tgcaccattg
     1561 gcaaggtgat gaagttcctg tacgattaca aaacagaaca aacagccgga aatgccggcg
     1621 ccgttcctca atccacactg ctgcagcaat tcgatcct
//
LOCUS       DATIQF010000474         2274 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_144889,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000474 DATIQF010000000
VERSION     DATIQF010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144889"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..625
                     /locus_tag="VLL95_07840"
     CDS             <1..625
                     /locus_tag="VLL95_07840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38810.1"
                     /translation="MATKLEDLSSSLYYDVNTNNTKGSPFLNDKNATGVLWVQKKVET
                     KYNGFECRFDLLNNRIQVQFAGNWYIINDQINQAILKYLKGRDTVSISLRSNYPPVGG
                     NDTASIYEVVEDGHAYQLLRYLRKTKADISMQGSNFRYEYRLFETWYLYNASLQKIES
                     IDSGPMSSGIIPAETLDAYKSDHKMPRKTADWKKMVKWLNASVVRQP"
     gene            complement(633..1934)
                     /locus_tag="VLL95_07845"
     CDS             complement(633..1934)
                     /locus_tag="VLL95_07845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38811.1"
                     /translation="MKSISSSLLLLYAFCMSACQPSASKEDAEFSFTISDADTVLFNS
                     FVDCNMAEAWIGDTFRIFPGKYGEDTVWGKARELMFTNGSNAPDAFDSDSADFRRPVL
                     PAVAPIGQAGLHGAVWFETVYQSKNDPSGKTLYAVYHNENYPQNLPYDSVTGQGYINY
                     KWPQGLQGPSSPAAVCRIGIMKSTDGGYHWENKGLFIEDLQPRMILKPYNTSNTFAGG
                     VGDPSAVAVGDYLYLFFGEYSYPEPYVEASYNWEVERKAQCISVARIALSDLDNPVGK
                     AKRWDGQSFAAPWNGSGKPIPALQIEQKAGGGPASSPTGGFYWGPSVSWNEYLQCWVM
                     LMGKVTGPSWAGSSIYISFNKNKDLSAGNNAVQWSTPKLLLDRPGYFLWYPSLQPMDD
                     EESVKNKYTCMRLGKKARLYVKFIKPERSIYASAHTITFFK"
     gene            complement(2014..>2274)
                     /locus_tag="VLL95_07850"
     CDS             complement(2014..>2274)
                     /locus_tag="VLL95_07850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38812.1"
                     /translation="MPPTLIDRANEILSWLESKHEESETKGNTVQAKMKDVAGPKMQL
                     SIFDAHSEVFDEIRTMLEGMDINRLTPVEALLKLNEIKGKLK"
BASE COUNT          595 a          537 c          556 g          586 t
ORIGIN      
        1 aatggctacc aaactggagg acctgagcag cagtctttat tacgatgtca atacaaacaa
       61 tacaaagggg tcaccattct tgaatgataa aaatgccaca ggtgttctgt gggtgcagaa
      121 aaaggtggaa accaaataca atggctttga atgtcgcttt gatctgctga acaacaggat
      181 acaggttcaa tttgccggca attggtacat cattaacgat cagatcaacc aggcaatact
      241 taagtatttg aaaggcaggg atacagtaag tatatcattg cgcagcaact atccacccgt
      301 cggtggaaat gatacagctt ccatttacga agtcgtagaa gatggacatg cctaccagtt
      361 actcaggtat ttgcgaaaaa cgaaagctga tatcagcatg caaggcagta actttcgata
      421 tgagtatcgt ctttttgaaa catggtattt gtacaatgcc tccttgcaga aaatagaatc
      481 gatcgatagt ggtccaatgt cctcagggat aataccggca gaaacattgg acgcatataa
      541 gtccgatcat aagatgccca ggaaaacagc cgattggaaa aaaatggtca aatggctgaa
      601 tgcttccgta gtgcgccaac cgtagtgcag tgttatttga aaaaagtgat ggtgtgtgcc
      661 gaagcataaa tactccgctc cggctttatg aatttcacat acaacctggc ttttttaccc
      721 aaccgcatgc aggtgtattt gttctttacg gattcttcat catccatggg ctgcaaactg
      781 ggataccaca aaaaataacc gggcctgtcc aataacaatt ttggagtact ccattgtacg
      841 gcattgttgc cagcgctgag gtctttgttt ttgttgaatg aaatgtagat gctgctgcct
      901 gcccaggatg ggccagttac cttgcccatc agcattaccc agcattgcag gtattcattc
      961 caactgacag agggccccca gtaaaagcca cccgtgggag aggaggctgg tccgccgcct
     1021 gctttctgct ctatttgcaa ggcaggtatt ggttttccac tgccattcca gggggcggca
     1081 aatgattggc catcccagcg tttggctttg cccacggggt tatccaggtc actcagcgca
     1141 atgcgggcca cactgatgca ttgtgctttc cgctccactt cccagttata gcttgcctct
     1201 acgtatggct ccgggtaact gtactctccg aagaacaggt agaggtaatc gccaaccgcc
     1261 acagctgaag gatcgcccac accacctgca aaggtgttgg atgtgttgta tggtttgagg
     1321 atcattctcg gctgcagatc ttcaatgaac aaccctttgt tttcccaatg atagccacca
     1381 tcggtcgact tcatgatgcc aatgcggcaa accgcggcag gcgaggaggg gccttgcaat
     1441 ccctggggcc atttgtagtt gatatagccc tggccggtca ctgaatcata cggcaaattc
     1501 tgcgggtaat tttcattgtg gtaaacggcg tacaaagttt tgccggaagg gtcgtttttg
     1561 gattggtata ccgtttcaaa ccaaacagca ccatgaagcc cggcttgacc gatgggcgcc
     1621 acggctggca gcacgggtcg ccggaaatca gcagaatccg aatcaaaagc gtcgggcgca
     1681 ttgctgccat tggtaaacat cagttcacgg gccttacccc acacggtgtc ctcaccatac
     1741 ttgccgggga aaatgcggaa cgtatcccca atccaggctt cggccatgtt gcaatccaca
     1801 aacgaattga agagcacggt atcggcatcg gaaatggtga atgaaaattc ggcatcttct
     1861 ttactggcag aaggctggca ggcactcatg caaaatgcat acagcaatag aagcgaactg
     1921 gaaatgcttt tcataggcag caatagatta ttgaggcaat ggcctaaaga taattgcagc
     1981 gtgggaaata gtgcaaaagg gataaagcct ttgctatttc aacttgcctt tgatttcatt
     2041 gagtttcagc aaggcctcca ctggtgtcag gcggttgatg tccattcctt ccagcatggt
     2101 gcggatctca tcaaacactt cgctgtgcgc atcaaaaatg ctcagctgca ttttggggcc
     2161 ggccacatct ttcattttgg cctgcactgt atttcccttg gtctctgatt cttcgtgttt
     2221 gctttcgagc cagctcagaa tttcgttggc tctgtctatc agcgtgggtg gcat
//
LOCUS       DATIQF010000475         3283 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_83867, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000475 DATIQF010000000
VERSION     DATIQF010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3283
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83867"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            67..1155
                     /locus_tag="VLL95_07855"
     CDS             67..1155
                     /locus_tag="VLL95_07855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38813.1"
                     /translation="MAHGGQGLAQSALRRRDQDSAKGIWRVLQVVFWLVGAFIFMALL
                     FWPSLGVLLFWNVLIPVAPALLVIATGFWRNVCPLASTNLLPRHLGISKKQIMPRNQQ
                     AWLSLLAVVALYTIVPLRHAVFNQSGLATAMLLAGCVTAGWLLGLFYDWKSGWCSSLC
                     PVHPVEKFYGTNPSFTFVNAHCAACVNCTVPCPDSTPNISPAKTAKAWQHRAAAFLII
                     GGLPGFIWGWFQVPDEINAQYSFYHLAGLYALPVGGLLMSSVLYLAMRKLIRPGDEKK
                     LTAVFAAAAVSTYYWFRIPALFGFGQFNNDGLLIDLTPYLQTPAILALKVATVSFFFW
                     WLVWKKQPARSWTSRPVFAKLKALSSRK"
     gene            complement(1160..1420)
                     /locus_tag="VLL95_07860"
     CDS             complement(1160..1420)
                     /locus_tag="VLL95_07860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38814.1"
                     /translation="MHFVFKKVTHFSRLLKAGGRLREFNFRKLTDLPEEGWFHVDVAD
                     ERGDRIIFRLSTSLKAASASLPPWVIEVWPQLLDVATEEHEA"
     gene            complement(1496..2581)
                     /gene="gcvT"
                     /locus_tag="VLL95_07865"
     CDS             complement(1496..2581)
                     /gene="gcvT"
                     /locus_tag="VLL95_07865"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: protein motif:HMM:NF001567.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HSR38815.1"
                     /translation="MKNTPFTHKHLALGAKMAEFAGYNMPISYTGINDEHATVRQNAG
                     VFDVSHMGEFILKGPDALDLIQRVTSNDASKLTAGKAQYSCLPNNDGGIVDDLIVYCL
                     EENQSYMLVVNASNIEKDWNWISRFNEKGVEMHNISDKTCLLAIQGPNACKMLQPLTE
                     VDICNLKYYTFVKGVFAGVDNVLISATGYTGSGGVEIYFEDKDGSADKVWDAIFEIGA
                     PQGLKPIGLGARDTLRLEMGYCLYGNDIDDTTSPLEAGLGWITKFTKPFTNSETLKAQ
                     KEQGVARKLVGFEMIDKGIPRHGYEIKNSEGGLLGVVTSGTQAPSLGKAVGMGYIANG
                     SNAIDSEIYIDIRGRLLKAKVVKMPFA"
     gene            complement(2669..>3283)
                     /locus_tag="VLL95_07870"
     CDS             complement(2669..>3283)
                     /locus_tag="VLL95_07870"
                     /inference="COORDINATES: protein motif:HMM:NF019284.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38816.1"
                     /translation="IITGWYANGQKAVVFAYKGGHLHGQWQTWYENGVKKEQGHFSNG
                     HPDGSWQFWYPSGFLKSERSFSAAKMQAVNIANRQRNPKLQFVPVTGKEPSSKETAPL
                     AHLYLSLPHSSFHIELPFHKAVHEGVYRNFAEDGGIIEQGNFANGLRDGQWLFYNHQT
                     KLISSGYYSYGAKNGPWKELVGDTLVALEEYKNGMLIHRKLYSY"
BASE COUNT          754 a          839 c          793 g          897 t
ORIGIN      
        1 atttgaatca tatccccgcg ccatgccgaa ccataatttg ctgccttcaa aaattgtgta
       61 ttgccaatgg cgcatggagg acaagggttg gcgcaatctg cattgcgaag aagggaccag
      121 gattctgcca aaggaatttg gcgggtactg caggtagttt tctggctggt gggtgccttc
      181 attttcatgg cactactttt ttggccttcg cttggtgtcc ttcttttttg gaatgtactc
      241 attcctgtgg caccggcact attggtcatc gctaccgggt tttggcgaaa tgtatgcccc
      301 cttgccagca ccaatttgct cccccggcat ttgggtattt cgaaaaagca aataatgcct
      361 cgcaaccagc aggcctggct cagcctgctg gcagtggtgg cgctgtatac tattgtgccc
      421 ctgaggcatg ctgtgttcaa ccaaagtggt ttggctacag ccatgctgtt ggctggctgt
      481 gtaacggcgg gttggctgtt gggattgttc tacgactgga aaagcgggtg gtgttcctcg
      541 ttgtgcccgg ttcacccggt tgaaaaattc tatggaacca atccatcgtt cacatttgtg
      601 aatgcacatt gtgcagcctg cgtaaactgc acagtgccct gcccggattc aacgcctaac
      661 ataagtcctg caaagactgc caaagcctgg cagcaccggg ccgccgcttt tttgatcatc
      721 ggtggattgc ccggttttat atggggctgg ttccaggtgc cggatgaaat caatgcccaa
      781 tactcatttt accacctggc aggtttatat gcgctgcctg tgggtggctt gttgatgtcc
      841 agcgtccttt acctcgctat gcgaaaattg attcgccccg gcgacgaaaa gaaacttaca
      901 gcagtatttg ctgccgcagc ggtaagcacg tattactggt ttcgcatacc tgctttgttt
      961 ggtttcggac agttcaataa tgacggattg ctcattgacc tgacacccta tctccagaca
     1021 cctgccatcc ttgccttgaa agtggcgaca gtatcattct tcttttggtg gctggtatgg
     1081 aaaaagcagc cagcccgaag ctggacctcg agacccgtgt ttgccaaatt gaaagcgcta
     1141 tcttccagga aataggatac tacgcttcat gttcttccgt cgccacatcc aataactggg
     1201 gccacacttc aatcacccag ggcggcaatg aagcactcgc agccttgagg ctggttgaca
     1261 gccggaaaat aatgcgatcc cccctttcgt cggctacgtc cacatgaaac catccttctt
     1321 cgggtaagtc agtcagcttc ctgaaattga actcccgcaa acgtcctccc gctttcagca
     1381 gcctgctgaa atgagtcact tttttgaata cgaaatgcat acccaccatt gttttcgggg
     1441 gatatggtgc aaattccgtg caagaaaacc aggaaattca cataggctgc aaaactcagg
     1501 caaaaggcat ctttaccact ttggctttca gcagtcggcc acggatatca atatagatct
     1561 cgctgtctat ggcgttggat ccgttggcta tatagcccat gcctacggcc ttgcccagtg
     1621 atggggcctg ggtgccgctg gtaaccacac ccagcaaacc gccttcggag tttttgattt
     1681 cataaccgtg gcggggaatg cccttgtcga tcatttcgaa gcccaccagt ttgcgggcca
     1741 cgccctgctc tttttgcgct ttcaaggttt cgctgttggt gaagggtttg gtgaatttgg
     1801 taatccaacc caggccagcc tccagcgggc tggtggtatc gtcaatatca tttccgtaaa
     1861 ggcaataacc catttcaaga cgcagcgtgt cgcgggctcc caatccaata ggcttcaggc
     1921 cttgtggtgc tcctatttca aagatggcat cccatacttt gtcggcactg ccatctttgt
     1981 cttcaaaata aatttcgacg cccccgcttc cggtgtagcc ggtggcactg atgagcacat
     2041 tatcaacccc tgcaaaaaca cctttgacaa aagtgtagta cttcaaattg cagatatcca
     2101 cttcggtaag gggctgcaac attttgcagg cgttgggacc ctggatggcc agcaaacaag
     2161 tcttatcgct gatgttgtgc atctccacac ccttttcatt gaagcggctg atccagttcc
     2221 aatccttttc gatattgctc gcattcacca ccagcatgta cgattggttt tcttccaggc
     2281 aatacacaat caggtcgtct acaatccccc catcgttatt gggcaggcag ctgtattgcg
     2341 ctttgccggc agtaagcttg ctggcatcat tgctggtaac gcgttggatc aggtccagtg
     2401 catcagggcc tttcagaatg aattcaccca tatggctcac gtcaaaaacg ccggcgttct
     2461 ggcgcacagt agcatgttca tcgttgatgc cggtgtagct gataggcatg ttgtaaccgg
     2521 caaactcggc catcttggca cccagtgcaa ggtgcttatg ggtaaaaggt gtattcttca
     2581 tcaggcaaaa ttttgaggtg caaatgtaag tagccagcga cagccgtcgc cagagattat
     2641 ttgtccaata tggaattgcg cagagaggtc aatagctgta aagcttgcgg tgaatcagca
     2701 ttccattttt gtattcttca agagctacca atgtatcgcc aaccagctcc ttccaagggc
     2761 cgttcttagc gccgtaagaa tagtatcctg aagagatcag cttcgtttga tggttataaa
     2821 agagccattg accatcccga agtccattgg caaaattccc ttgctcgatt attcctccat
     2881 cttcagcgaa gtttctgtac acgccttcgt gtactgcctt gtgaaaagga agctcaatat
     2941 gaaatgagct gtgaggcagc gataaatata aatgagcaag tggtgctgtt tcttttgaag
     3001 acggttcttt gccggttacc ggaacaaatt gcagttttgg atttcgctgc cggttggcaa
     3061 tgttgacggc ttgcattttg gcagcactaa agcttcgctc acttttcagg aaaccggaag
     3121 ggtaccagaa ttgccaggaa ccatcaggat gaccatttga aaaatggcct tgctccttct
     3181 ttacaccatt ttcataccac gtttgccatt gcccgtgcag atgaccacct ttatatgcaa
     3241 acacaacagc cttctgtcca ttggcatacc agccggtgat gat
//
LOCUS       DATIQF010000476         1539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_38106, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000476 DATIQF010000000
VERSION     DATIQF010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38106"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(277..660)
                     /locus_tag="VLL95_07875"
     CDS             complement(277..660)
                     /locus_tag="VLL95_07875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38817.1"
                     /translation="MKKLILFSALCLFTAAGAFAQNAKWEDLSKEEKMMKLQAFREDN
                     QKYLKDSLGMNADQLNDIDNVNVCFLSTMERIQRYGKDKVNMQKFAEAVAAERSIQLE
                     AIMGPEKRKKFAQYVEAKLKKAGVM"
     gene            784..>1539
                     /locus_tag="VLL95_07880"
     CDS             784..>1539
                     /locus_tag="VLL95_07880"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HSR38818.1"
                     /translation="MLLLLIGCIIHTCITAQPVPNIVVIVADDLGYGDLGCYGSKSIS
                     TPQLDKMAGNGIRFTQAYAAAPVCTPSRTAFMTGRYPARTTVGLYEPLDWTAADSSVG
                     LIPSTPSLPALLRQSGYTSHLTGKWHLGFTAASSPLANGFDSFFGYNGGGIDYVSHTD
                     PKGVPDLFIDRETVHLEGYLTHLLTNDAVSFLYRKHKQPFFLSIQFNAPHWPWQAPGD
                     SAYPLGNNEWKQNGTPQKYAAMVASMDSAIGRIL"
BASE COUNT          386 a          361 c          345 g          447 t
ORIGIN      
        1 gctataatgg aagcaatgaa ataggtgcgc acaagatttt acttgaatag tggtggatta
       61 aaaataaaga taggattcag ctttggcatt aaaagctatc aacaggacta ccattgcaat
      121 tgagtcgcca agtgccggca aataaccctg atgattagga ttgataaaaa aactgccttg
      181 caggatcttg atgagagtcg gtgaggacca ttttcaaaat catacaaggc aggctttggt
      241 aatttttcgt attcttcagc aacaggaatt atgtcattac atgacccctg cctttttcag
      301 tttggcttcc acatactgcg caaatttttt gcgcttttca ggacccatga tcgcttccaa
      361 ttgaatgctt cgttcagccg ctactgcctc ggcaaacttt tgcatgttca ctttgtcttt
      421 gccataccgc tgaatgcgtt ccatggtact cagaaaacat acgtttacat tatctatatc
      481 attcagctga tcggcattca tgcccagcga atctttcagg tacttttggt tgtcttcgcg
      541 aaaagcctgg agcttcatca ttttttcttc tttgctgagg tcttcccatt ttgcattttg
      601 ggcgaaagcg cctgcagcag taaacaggca gagtgctgaa aagaggatca attttttcat
      661 gttgtttgtt ttaaggatgg tgaagatagc actgtttttc tcctgctgag attcaaaata
      721 atcattgatt agctcatagc ttccctatat tgaattatga aaatgaatgg ccggttcaac
      781 aagatgttat tactgttgat tgggtgtatc atccatacct gcattactgc gcaaccagtg
      841 cccaatattg ttgtgattgt agcagacgat ttgggctatg gtgacctcgg gtgctacggc
      901 agcaagtcca tcagtacgcc tcagttggat aaaatggcag gcaacggtat tcgattcacg
      961 caagcctacg ccgctgcccc cgtttgcacg cccagccgca ctgcattcat gactggccgc
     1021 taccctgccc gcacgacggt tggactgtat gagccactcg attggaccgc tgccgacagt
     1081 tcggtaggtc taattccttc cactccttcg ttgcctgccc tgctcaggca aagcggttac
     1141 acgtctcatt tgaccggtaa atggcaccta ggctttactg ctgccagctc cccattggcc
     1201 aatgggttcg attctttttt cggatataat ggcggcggca ttgattatgt aagtcatact
     1261 gatcccaaag gggtgcctga cttgttcatt gaccgggaga ccgtgcacct cgaaggatat
     1321 ctcactcatt tgctgaccaa tgatgccgta agtttcctgt atcgaaaaca caagcaacct
     1381 ttctttctca gcatacagtt caatgcgcca cactggccct ggcaagcgcc cggagatagt
     1441 gcatacccat taggtaacaa tgaatggaaa cagaatggca ctcctcaaaa atacgcggcc
     1501 atggtggcta gtatggatag cgctattgga cggatactt
//
LOCUS       DATIQF010000477         2994 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_281382,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000477 DATIQF010000000
VERSION     DATIQF010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2994
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281382"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..871
                     /locus_tag="VLL95_07885"
     CDS             <1..871
                     /locus_tag="VLL95_07885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38819.1"
                     /translation="EVKDILAAEAGGQVKGTPLKQFDLRRMEKRLMQEVWIEQAQLYV
                     DNAGVMHANLAERVPVARLFDVTGNSFYIDSTGKHLPLSAQERADLPVFTNVPVLNKN
                     NKGLYDSTLNDIVGIANVVRRDSFWIAQAAQIDLLGNGKYELYPAIGYHKIELGNAND
                     MAAKLERLKIFYHDVLAYKPLNAYSLLSVAYKNQVVAVKGDGQMPGIDPAKAVEVFNQ
                     LVTQTKTEVNANAVESENKQGRIMPEYGSAASPAKTHAREAVAPVQQPATPKPDSNMQ
                     KPRAVMPAKTTNN"
     gene            883..2277
                     /gene="ftsA"
                     /locus_tag="VLL95_07890"
     CDS             883..2277
                     /gene="ftsA"
                     /locus_tag="VLL95_07890"
                     /inference="COORDINATES: protein motif:HMM:TIGR01174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HSR38820.1"
                     /translation="MSNNNPIIVGLDIGTTKIAAIAGRKNEYGKLEILGFGKASSNNS
                     VQHGQVLNIDNAVAAIKEAMVACRQSNPNLNISEVYVGIAGHHIKSLQTRGDLVRQDL
                     ENEITQADVDKLVADQRKTYIPAGDQIIDVIPQEFNVDNFQLIKNPIGYTGVKLGANF
                     HIITGDKFAIRNITRAVNRSELSIKDIVLQPLASADAVMCDHDLEAGVAILDIGGGTS
                     DLAVFHEGILKHTAVIPFGGENITNDIKTGLGVLKSQAEAMKVQFGSALSQEAKANAI
                     ITIPGIRGMQPKQVSVKTLAQIIQARMSEILDFVVYHLKQVGMDNKQLNGGIILTGGG
                     SQLKHLIQLTEYQTGLNARIGFPNEHLSSGYIDELTKPMYSTCIGLILKGYSDFERKK
                     KEFVTSNIEMSVKVPEQFKAPEVVLATPEVELPVAEAPVPRGPMEYRQRSIWDKLKDS
                     IYEIFKEEDDTELK"
     gene            2351..>2994
                     /locus_tag="VLL95_07895"
     CDS             2351..>2994
                     /locus_tag="VLL95_07895"
                     /inference="COORDINATES: protein motif:HMM:NF012320.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HSR38821.1"
                     /translation="MIHFDMPREKSNIIKVLGFGGGGGNAVNHMYHQHIQNVDFIICN
                     TDAQALQNSPVPNKIQLGPHLTQGLGAGANPTIGKQATEESLEEIRRILEINTKMAFI
                     TAGMGGGTGTGGAPTVAKICRDLGILTVGIVTTPFQFEGPRRMQQARQGIEELKEHVD
                     TLLVISNDKLRHQFGNLKMRDAFAKADDVLSTAARCITDVINSHGQINVDFADV"
BASE COUNT          849 a          792 c          751 g          602 t
ORIGIN      
        1 ggaagtgaaa gatatactgg ccgctgaagc gggtggacag gtgaagggta caccactgaa
       61 gcaattcgat ctgcgccgca tggaaaagcg cctgatgcag gaagtatgga ttgagcaggc
      121 acaactgtat gtagacaatg ccggcgtaat gcatgccaac ctggctgagc gagtaccggt
      181 agccaggctg tttgatgtaa cgggcaatag tttttatata gacagtaccg gcaagcacct
      241 gccgctgagc gcccaggaaa gagccgacct gccggtattt accaacgtgc cggtattgaa
      301 caaaaacaac aaaggcctct acgacagtac cctgaatgat attgttggca tcgccaatgt
      361 agttcgccgc gacagtttct ggattgcaca ggccgcacag attgatctgc tgggcaatgg
      421 caagtatgaa ttgtaccctg ctattggtta ccacaaaata gaattgggca atgccaatga
      481 tatggctgcc aaactggagc ggttgaaaat cttctaccac gacgtgttgg catacaaacc
      541 attgaatgcc tattcactgc tgagtgtggc atacaagaac caggtggtgg ctgtgaaagg
      601 tgatgggcaa atgcccggca ttgatcctgc caaagcggtg gaagtattca atcaactggt
      661 aacacaaacc aaaacggaag taaatgccaa tgcagtagaa agcgaaaaca agcaagggcg
      721 catcatgcct gaatacggaa gcgctgcttc gcctgccaaa acgcatgcca gggaagcagt
      781 ggcgcctgta caacaacctg ccaccccaaa acctgacagc aatatgcaaa aacccagggc
      841 cgtaatgcct gccaaaacca caaacaacta aaacacaatc atatgagtaa caacaacccc
      901 atcatcgttg gccttgacat aggcacaaca aaaattgcag ccatcgccgg ccgcaaaaac
      961 gagtatggca agttggaaat ccttggcttt ggtaaagcca gttccaacaa ctcggtgcag
     1021 cacggccagg tattgaacat cgacaatgcc gtagccgcca tcaaagaagc tatggttgcc
     1081 tgtcgccaaa gcaatcccaa cctcaacatc agcgaggtgt acgtgggcat tgccgggcac
     1141 cacatcaaaa gcctgcaaac ccgcggcgat ttggttcgcc aggatcttga gaatgagatc
     1201 acccaagcgg atgtagacaa actggtggcc gaccagcgca agacttacat tcctgccggc
     1261 gaccagatca tcgatgtgat tccgcaggaa ttcaacgtcg ataatttcca actaattaaa
     1321 aatcccattg gctacaccgg agtaaaactg ggcgccaatt ttcatatcat caccggcgac
     1381 aagtttgcca tccgcaacat cacccgtgct gtgaaccgca gcgaactcag catcaaggac
     1441 attgtgctgc agccgctggc ttcggccgat gccgttatgt gcgatcacga cctggaagca
     1501 ggcgtggcca ttctcgacat tggtggtggc accagcgacc tcgccgtttt tcacgaaggc
     1561 atattgaagc acacagccgt tattcctttc ggtggtgaaa acatcaccaa cgatatcaag
     1621 accgggctgg gtgtgctgaa gagccaggct gaggccatga aagtgcagtt tggcagcgcc
     1681 ctctcacagg aagccaaggc caatgccatc atcaccatcc ccggcattcg cggcatgcag
     1741 cccaagcagg tgagtgtaaa aacactggcc cagatcatcc aggcccgcat gagcgaaata
     1801 ctcgacttcg tggtgtatca cctgaagcag gtgggcatgg acaacaagca actcaatggt
     1861 ggcatcatcc tcaccggtgg tggctcgcaa ctcaagcatc tcattcagct caccgaatac
     1921 cagactggat tgaatgcccg cattggtttc cccaatgagc acctgagcag cggctacatc
     1981 gacgagctga ccaagccaat gtattctacc tgtattggtc tgatcctgaa aggctatagc
     2041 gatttcgaaa ggaagaagaa agaatttgtg accagcaaca ttgaaatgtc cgtaaaagta
     2101 cccgagcagt ttaaagcgcc ggaagtggta ttagccacac cggaagtgga actgccggtg
     2161 gctgaagcgc cagtgccacg cggtcccatg gaataccgcc agcgcagcat ctgggacaag
     2221 ctgaaagatt ccatttacga gattttcaaa gaagaggacg ataccgaatt aaaataatca
     2281 cctcatcata aatcgagctc atcaacttac taatccttgc ctgtgaagag gcagcaaaaa
     2341 acaaattctt atgattcact ttgatatgcc ccgggaaaag tccaacatca tcaaggttct
     2401 tggttttggt ggtggtggcg gaaatgctgt aaaccatatg tatcatcagc atatccaaaa
     2461 cgtcgacttc attatctgta acactgatgc gcaggcgctg caaaacagcc ctgtgcccaa
     2521 taagatccag ttgggccccc acctgacaca aggcctgggt gccggcgcca atcctaccat
     2581 tggcaagcaa gccaccgagg aaagcctcga agaaatccgc cgcatcctgg agatcaatac
     2641 caagatggcc ttcatcactg ccggcatggg tggtggtacc ggtaccggtg gcgctcctac
     2701 cgtggctaaa atttgccgcg acctcggcat ccttacagta ggcatcgtaa ccactccatt
     2761 ccagttcgaa ggtccgcgcc gcatgcagca ggcccgtcag ggtattgaag aactgaaaga
     2821 gcatgtagac acgctgctgg tgatcagcaa cgacaagctg cgccaccagt tcggcaacct
     2881 gaaaatgcgt gatgcttttg ccaaggccga tgacgtactt tctaccgccg cccgttgtat
     2941 cactgacgtg atcaacagcc acggacagat caacgtagac tttgccgacg tgtg
//
LOCUS       DATIQF010000478         2215 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_205780,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000478 DATIQF010000000
VERSION     DATIQF010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2215
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205780"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            300..626
                     /locus_tag="VLL95_07900"
     CDS             300..626
                     /locus_tag="VLL95_07900"
                     /inference="COORDINATES: protein motif:HMM:NF013089.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HSR38822.1"
                     /translation="MSWLYLILAAFCEIAFAGSLKLTQNFTNLKWSVIFVAFYVLSIV
                     LLNKAVQTIHIGTAYAIWTGIGAAGTVLIGIFYFKEPVNFWRIFFLCTLILSIIGLKF
                     FTAENH"
     gene            681..>2215
                     /gene="pruA"
                     /locus_tag="VLL95_07905"
     CDS             681..>2215
                     /gene="pruA"
                     /locus_tag="VLL95_07905"
                     /EC_number="1.2.1.88"
                     /inference="COORDINATES: protein motif:HMM:TIGR01236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003842 - 1-pyrroline-5-carboxylate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006562 - proline catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamate gamma-semialdehyde dehydrogenase"
                     /protein_id="HSR38823.1"
                     /translation="MSFGTFSYPMPANEPVLQYAPGSKEREAQQRLLAELKKKEIDIP
                     QYIGGRAVRSGDRHPIHPPHERHYVLGHYHAGTKQHVQQAIDAALKAKPMWEAMPWEE
                     RAAIFLKAADLIATKYRYHMNGTTMLGQSKNVYQAEIDSACEIIDFLRFNVHFLSEIY
                     KQQPISAPGMHNRMEWRALEGFVLAVTPFNFTAIGGNLPTSAAMCGNVVLWKCANTQI
                     YSAQMFMRILMEAGLPDGVINLLYVDGPTIGDVCFNHRDFAGVHFTGSTGVFNHMWAT
                     IGANTPKYKSYPRIVGETGGKDFVLVHKSADVDTVVTALARGAFEYQGQKCSAASRAY
                     IPSNIADRIKAKLVAEVESMKMGTVEDFGNFINAVIDEKSFDKLKKYIDNAKKDRKAK
                     ILVGGNCSKKDGFFIEPTVIEVRDPRYITMCEELFGPVLTIYTYKADEFEKAMDLVDT
                     TSPYALTGSIIAQDRSAVEAATKRLRHAAGNFYINDKPTGAVVGQQPFGGARASGTND
                     KAG"
BASE COUNT          602 a          521 c          549 g          543 t
ORIGIN      
        1 ggcagccaga tcaggagtta tgttttccat ccttacaaga tgatcaaaga ccatcggacg
       61 gattacgaag taggcaatat cggcccggta atggatggtg aactggatgg attcatcaag
      121 gcgtatttga tgagtgagaa agaagaccag gtaacgggat gatttgggga tgtgagatgt
      181 cggatgtctg atttgtaaat aaaaagagga gcgtagaaac cttgaaatga gtttgcgaaa
      241 tcataaatca gaattcagaa atcagagatc agaaatcata catcagccat caaaaagaaa
      301 tgtcctggct ctacctcata ctggcagcgt tctgtgaaat agcctttgcc ggcagcctga
      361 aactgacgca gaattttacc aacctcaaat ggtcggtgat ttttgttgct ttctatgtgc
      421 tgagcatcgt gttacttaac aaagcggtac aaaccataca cattggcacc gcttacgcta
      481 tatggacagg aataggagca gccggaaccg tgctgattgg tatattttat ttcaaggaac
      541 ccgtgaattt ctggcgcatc tttttccttt gcacactcat cctttcaatc attggactca
      601 aattcttcac tgctgaaaac cactgattag tccctcgctt ttaaaacaca atacattttc
      661 tcattttcaa attgtttgct atgagttttg gaactttttc ctacccgatg cctgccaatg
      721 agcccgtact gcaatacgcc cccggcagca aggaacgcga agcacagcag cgattgctgg
      781 ccgaactgaa gaagaaagag atagacatac cacaatacat tggtggtcgt gcagtacgca
      841 gtggcgatcg ccatcctatt catccgccac atgagcggca ttatgtgctc gggcattacc
      901 acgccggcac caaacagcat gtgcagcaag ccattgacgc cgccctgaag gccaagccca
      961 tgtgggaagc gatgccatgg gaggagaggg ctgccatttt tctgaaggcc gctgacctga
     1021 tagcgaccaa gtatcgctat cacatgaacg gtactaccat gctgggccaa agtaagaatg
     1081 tgtaccaggc cgaaatagac agtgcctgtg agatcatcga cttcctgcgt ttcaacgtac
     1141 acttcctcag cgaaatttat aagcagcaac caatcagtgc gcccggcatg cacaaccgca
     1201 tggagtggcg tgcactcgaa ggtttcgtgc tggctgtgac gccgttcaac ttcactgcca
     1261 ttggcggcaa cctgcctacc agtgcggcaa tgtgtggcaa cgtggtgttg tggaaatgcg
     1321 ccaacacgca gatttactct gcccaaatgt tcatgcgcat tttgatggaa gccggtcttc
     1381 ccgatggtgt tatcaacctg ctgtatgtgg atggtcctac cattggtgat gtttgcttca
     1441 atcatcgtga ctttgcaggt gttcacttca ccgggtcaac aggtgtgttc aaccacatgt
     1501 gggctaccat tggtgccaat acaccgaaat acaaaagcta tccccgcatt gtaggtgaaa
     1561 caggtggtaa ggattttgtg ctggtgcaca aatcagccga tgtggataca gtggttacag
     1621 ctttggcccg cggcgctttt gagtaccagg ggcaaaaatg ttctgctgcc agccgtgcct
     1681 acattcccag caacatcgcc gatcgcatca aagcaaaact ggtggccgaa gtggagagca
     1741 tgaagatggg tactgtggaa gatttcggca acttcatcaa tgccgttatt gatgaaaaga
     1801 gcttcgacaa actgaagaag tacattgata atgccaaaaa ggatcgcaaa gcgaaaatcc
     1861 tggtgggtgg caattgcagc aaaaaggatg gattctttat tgaacccact gtcattgaag
     1921 ttcgcgaccc caggtatatt acgatgtgcg aagagttgtt tggcccggtg cttaccattt
     1981 atacttacaa agccgatgag tttgaaaagg ccatggacct ggtggatacc acttcgcctt
     2041 atgcactcac gggttccatc attgcacaag atcgttctgc cgtagaagcc gctaccaaac
     2101 gacttcgtca tgcagcgggc aatttctaca tcaacgacaa accaacaggc gcagtagttg
     2161 gtcagcaacc ttttggtggc gcccgtgcca gtggtaccaa cgataaagca ggcag
//
LOCUS       DATIQF010000479         1708 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_53568, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000479 DATIQF010000000
VERSION     DATIQF010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1708
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53568"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1334)
                     /locus_tag="VLL95_07910"
     CDS             complement(<1..1334)
                     /locus_tag="VLL95_07910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HSR38824.1"
                     /translation="MLSLFKYKPGFVRCKVMRLFMLLLLSQTISYAQVLKSISLQNGS
                     PTHRIQRLVQHTLGYLLVGTQSGLYRFNSAALTRLNPDTAIASTNVTAIGILKDGEVW
                     IGFQNGQLGKLVSRKVALLQFEEGQFKVPVTDILQDAEGRVWCATGGEGIYCYQNKKW
                     YNLNTDDGLSDNYVYDLLLTKRNQLLAATDAGVNQVQFTGQQKRISFLSSGRGLSDNI
                     TTCLSELPDGRILAGHEQNGYSLLQSNSNGLQLTLSNRQWPFGRVNALQVTPPYIYAV
                     SADSGLVFAPIADSLAFAPVPGMAACNQAALADQEGNLWAAAPGEMMVTRYPQQRLLV
                     KAAMANDNAVHAVLADRHGNVWFGNHNQLYMVSSENGKLKKLADLPTSAMQTEITALH
                     QDEAGIIWIGTMGHGIWLLQPETQMIKALNELAAAAENNVLSISGKGNVVWV"
     gene            complement(1337..>1708)
                     /locus_tag="VLL95_07915"
     CDS             complement(1337..>1708)
                     /locus_tag="VLL95_07915"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HSR38825.1"
                     /translation="KVSMSSFKGFNSAMQQTHFNENYMESVKFKEAVFKGKIIEDIDW
                     NQPGKYPVRAKGILTIHGVPQERIIKADVTILPNKSLQVESLFSVMLSDHNIPIPRIV
                     KEKLAEEIKVGISAKLEPRNQ"
BASE COUNT          374 a          457 c          427 g          450 t
ORIGIN      
        1 ctcacccaca ccacattgcc tttgccgcta atgctcaaca cattgttttc ggcagcagcg
       61 gccaattcgt tcagcgcttt gatcatttgc gtttcgggct gcagcagcca gataccatgg
      121 cccatggtgc ctatccaaat aatacccgct tcatcctggt gcagggccgt gatctccgtt
      181 tgcatggcgg atgtaggtaa atccgccagc tttttgagct taccgttttc ggagcttacc
      241 atgtacagtt ggttatggtt gccaaaccac acgttgccat ggcggtcggc cagtactgca
      301 tgaacggcat tgtcgttcgc catggccgcc ttcaccagca ggcgctgctg aggatagcgg
      361 gtcaccatca tttcgccggg cgcagcggcc cagaggttgc cttcctggtc ggccaatgcc
      421 gcctggttac aagcagccat accgggcacc ggcgcaaaag ccagcgaatc agcgatcgga
      481 gcaaagacca acccgctgtc tgcggatacg gcataaatat atgggggtgt cacctgcagc
      541 gcattcacac gaccaaaggg ccattgccgg ttggaaaggg tcaattgcaa accattgctg
      601 ttggattgca gcagcgagta tccattttgc tcatgccctg ccagtatgcg tccatccggc
      661 aattcggaaa ggcaggtggt gatattgtcg ctcagccccc ggcctgatga caggaaactg
      721 attcgctttt gctgcccggt gaactgaacc tggttgacac cggcatcggt tgctgcaagc
      781 aattggttgc gcttagtcag cagcaggtcg tacacataat tatcactgag cccgtcatcg
      841 gtattcaggt tgtaccattt cttgttttgg tagcagtata tgccttcgcc gccggtggca
      901 caccaaaccc ggccttcggc atcctgcaga atatcggtca caggcacttt gaactgtccc
      961 tcttcaaact gaagcagtgc taccttcctg ctcaccagtt tgcccaattg cccgttctga
     1021 aatccgatcc aaacttctcc gtctttcaat atgccgatgg cagtaacatt ggtgctggca
     1081 atggcagtat caggattcaa cctggttaac gcagcgctgt tgaaacggta caaaccgctt
     1141 tgcgtaccca ccagcaaata gcccaatgta tgctgcacca gccgctgtat gcggtgggtg
     1201 ggacttccat tttgcaagct gatgcttttg agcacctggg catacgatat cgtttggctc
     1261 agcagcaaca gcatgaagag ccgcatcact ttgcaacgca caaaaccagg tttgtatttg
     1321 aagaggctga gcaagcttac tgattgcggg gttcaagttt ggcactgata cccactttta
     1381 tttcttcggc cagtttctct ttcactatgc gtggaatggg tatgttgtga tcgctgagca
     1441 ttaccgaaaa aagcgattca acctgtaatg atttgttggg gagtatggtt acatccgctt
     1501 tgatgatgcg ttcctgtggc acgccatgga tggtaagaat ccctttggcc cgcaccgggt
     1561 atttgccggg ttggttccaa tcgatgtcct caatgatctt gcctttgaaa acagcctctt
     1621 tgaattttac cgactccatg taattctcat tgaagtgcgt ttgctgcatc gcactgttaa
     1681 atcctttgaa tgaactcatt gaaacctt
//
LOCUS       DATIQF010000480         1819 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_68674, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000480 DATIQF010000000
VERSION     DATIQF010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1819
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68674"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(160..927)
                     /locus_tag="VLL95_07920"
     CDS             complement(160..927)
                     /locus_tag="VLL95_07920"
                     /inference="COORDINATES: protein motif:HMM:NF040120.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6498-containing protein"
                     /protein_id="HSR38826.1"
                     /translation="MKGQASWFFTALKPSTNNWMIWAGSLVLLAGLFYGNWNPLVVVF
                     GYFLETIVIGLLHVSKMGVTLRFGQAQQMANRGESDNMFGGAFAIVFFLVHYFFFVFG
                     QSIFIFSFFGKKEFGFENAFSVFKNYYILLQRPDMQLVLGIVTATQLGSAIMYFFMPR
                     KYNQYTLEQLFLQPYLRIVVQQFATILTGFFMLLLGGPEAAALLLIVVRLVLDCTLIG
                     ARQNARIRSALQRSLLKNESPEAVAQAEKLMEVWLDQ"
     gene            1057..>1819
                     /locus_tag="VLL95_07925"
     CDS             1057..>1819
                     /locus_tag="VLL95_07925"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: protein motif:HMM:NF015047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016703 - oxidoreductase activity, acting
                     on single donors with incorporation of molecular oxygen,
                     incorporation of one atom of oxygen (internal
                     monooxygenases or internal mixed function oxidases)
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HSR38827.1"
                     /translation="MSAFSNRITQLFHIERPIIQAGMIWASGWRLASAVSNAGGLGIL
                     GAGSMYPQVLREHISKFKAASAKPFAVNLPLLYPDIDAHIQTIIEEKVPIVFTSAGNP
                     KTWTPLLKSHGITVVHVVSSSKFALKSQEAGVDAVVAEGFEAGGHNGREETTTMVLIP
                     AVKEAVHIPVIAAGGIGTGAQMAAAFCLGAEGVQVGSRFVATPEASSHLAFKEAVVHA
                     KEGDTMLMLKELTPVRLLKNKFFAEVQAAEEKAASK"
BASE COUNT          501 a          482 c          440 g          396 t
ORIGIN      
        1 gttcgcgaca gcattattgg ctcctatacc aacctgtttg aagtggtgct cgacaattca
       61 ctgattggca gcgatgccag tgtgaaaggc ctgagccgca gcctgaacat tggcgacaat
      121 actgaaatag atttcggtta gcgcattgaa ctgttgcact tattgatcca gccaaacctc
      181 cattaatttt tccgcctggg ctacagcttc cggcgattca tttttcaaca acgatcgttg
      241 taaagcactg cgtatacggg cattttgccg tgcgcctatc aatgtacaat ccagcaccag
      301 ccgcaccaca atcaacaaca aagcggccgc ctcgggacct cccagcaaca acataaaaaa
      361 accggtaaga atggtagcga attgctgtac tacaatccgc aggtaaggct gcaaaaacaa
      421 ctgctccaac gtgtactgat tgtatttgcg aggcatgaaa aagtacatga tggcactacc
      481 cagttgggtg gctgttacaa tgcccaacac cagctgcata tcggggcgct gcagcagtat
      541 gtaatagttt ttaaagacac tgaatgcatt ttcgaatcca aactctttct ttccaaaaaa
      601 cgagaaaatg aaaatggact gaccgaacac gaagaaaaaa taatggacca gaaaaaacac
      661 aatggcaaag gcgccgccaa acatgttatc agattcgcct ctgttggcca tttgctgtgc
      721 ttgcccaaac cgcaacgtga cacccatttt tgaaacgtgc agcaacccaa tcacgatggt
      781 ttccagaaag tagccaaaaa caaccaccaa cggattccaa tttccgtaaa acaagcctgc
      841 caatagaacc aggctgccag cccaaatcat ccaattgttg gtacttggtt tcagcgctgt
      901 aaaaaaccag cttgcttgtc ctttcatatc agtcgggctt atgcattaaa cataccaaca
      961 aatgtggtcg gacccaatac ccgcttgccg gcatttgcag cggcaccatt aggtttgcag
     1021 tagattgcta cttcattcac tattttaatt gcccatatgt ccgcattctc caacagaata
     1081 acacaactct tccatattga acggcccatc atccaggcgg gcatgatctg ggccagtggc
     1141 tggcgtttgg ccagtgccgt cagcaatgca ggcgggctgg gcattttggg cgcaggcagc
     1201 atgtacccgc aggtattgcg ggagcacatc agcaaattca aggcggcctc agccaaacca
     1261 tttgctgtca acctgccttt gttgtacccg gacatcgatg cgcacatcca aaccatcatt
     1321 gaagaaaaag tgcccattgt atttaccagt gccggcaatc ccaaaacctg gacaccgttg
     1381 ctaaagagcc acggcatcac agtggtacat gtggtcagca gcagcaagtt tgcgctcaaa
     1441 agccaggaag ccggcgtgga tgccgtagtg gccgaaggct tcgaagccgg tgggcacaat
     1501 ggccgcgaag aaaccaccac catggtattg atacccgcgg tgaaggaggc cgtacacatt
     1561 ccggtgattg cggccggcgg catcggtacc ggcgcccaaa tggcggctgc cttttgcctg
     1621 ggtgccgaag gcgtgcaggt gggttctcgt tttgtggcca cgccggaagc cagcagccac
     1681 ctggctttca aggaggccgt ggtgcatgcg aaagaaggtg acaccatgct catgctgaaa
     1741 gaactgacac cggtacgcct gctcaaaaat aaattcttcg cggaggtgca agcggccgaa
     1801 gaaaaggctg ccagcaaag
//
LOCUS       DATIQF010000481         1518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_190420,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000481 DATIQF010000000
VERSION     DATIQF010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190420"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..384
                     /locus_tag="VLL95_07930"
     CDS             <1..384
                     /locus_tag="VLL95_07930"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HSR38828.1"
                     /translation="FAPQGNKVNSSEPMMRWSKPSIVLMSEGNYSDAFIFPYIYKQNG
                     IGKLVGMPVPGTGTAVWWETQIDPTIVFGIPMVATIGKEGRPTENLQVEPDIKVSLKY
                     EEFLKGKDAQLEAAVKHMLETIGQK"
     gene            574..1140
                     /locus_tag="VLL95_07935"
     CDS             574..1140
                     /locus_tag="VLL95_07935"
                     /inference="COORDINATES: protein motif:HMM:NF025432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4256 domain-containing protein"
                     /protein_id="HSR38829.1"
                     /translation="MATNKTKLTGAQQQALIQTLEGRFAKYRHRHSGIAWEEVKAKLA
                     ANADACWSLQQMEDTGGEPDVVAFEKKTGQFIFMDCAAESPSGRRSLCYDEAALDARK
                     ENKPAGSAMGMATAMGITLLDEAQYRHLQTLGDFDAKTSSWLLTPPPIRQLGVSLFGD
                     RRYNQVFIYHNGAQSYYAARGFRGMLKL"
     gene            1319..>1518
                     /locus_tag="VLL95_07940"
     CDS             1319..>1518
                     /locus_tag="VLL95_07940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38830.1"
                     /translation="MIAFVGILLLIPFIAMQFTSEVNWSGFDFLVAGVLLLGTGLLVE
                     GVLRTVKTKSKRLVLVSVILLIL"
BASE COUNT          416 a          389 c          376 g          337 t
ORIGIN      
        1 tttgcacccc agggcaacaa agtgaacagc agcgaaccaa tgatgcgctg gagcaaaccc
       61 agcatcgtgc tcatgagcga aggcaactac agcgatgcct tcattttccc ctacatctac
      121 aaacaaaatg gaattggcaa actggtaggc atgcctgtgc ccggcaccgg tactgccgtg
      181 tggtgggaaa cacaaattga tcccaccatc gtgtttggca ttcctatggt agctaccatt
      241 ggcaaggaag gccgacctac cgagaacctg caggtggagc ccgatatcaa agtgtcgctg
      301 aaatatgaag aattcctgaa aggaaaagac gcccagctgg aagccgctgt aaagcatatg
      361 ctggaaacca ttgggcagaa ataaattgaa ccagattgca tagaaaacac cggccggcat
      421 aggtcggtgt tttcttatga atgaacttct ttactgaata gaaaaattta atcccaccag
      481 ctgcattgcc gggtgcccat ttatttatcc ggttacctgc tgtcgggttt ggcatcatat
      541 tttcaggttc cttttatcaa gaattgtgac cccatggcaa caaacaaaac aaaacttaca
      601 ggcgctcagc aacaagctct gattcaaaca ctggagggcc gatttgcaaa atacaggcac
      661 aggcattccg ggatcgcctg ggaagaggtg aaagcgaagc tcgcagccaa tgccgacgcc
      721 tgctggagcc tgcagcaaat ggaagacaca ggtggcgaac ctgacgtggt tgccttcgaa
      781 aagaaaacag gccagttcat tttcatggac tgtgctgcgg aaagcccgtc aggcaggcgc
      841 agcctttgct acgacgaggc tgccctggat gcccggaaag aaaacaagcc ggcaggaagt
      901 gccatgggta tggcaacggc aatgggcata accctgcttg atgaagcgca ataccgtcac
      961 ctgcaaacgc ttggcgactt tgatgccaaa acatccagct ggttgcttac gccgccaccc
     1021 atccgccaac tgggtgtttc cctatttggc gaccggcgct acaaccaggt tttcatttac
     1081 cacaacgggg cacagagtta ctacgctgcc agaggcttcc ggggcatgct gaagctgtga
     1141 ccgggaggcc cgccgctcat ccttgttttt caaggcttgt aaaaaaggat ccatttactt
     1201 tgaaaaacaa agtactttta caaaagcatt tagatctgtg cttcctgtga tgcaaaccga
     1261 tcattaatca taaaaatcaa attcgaccat atcaactgcc aacaaacgcc tggtggcaat
     1321 gatcgccttc gtaggcatcc tgcttctcat cccctttata gccatgcaat tcaccagcga
     1381 ggtaaactgg tcaggcttcg actttttagt ggcaggcgtg ctgttgctgg gcaccggctt
     1441 actggtggaa ggcgtactga gaaccgtaaa aaccaaatcg aagcgcctgg tgctggtcag
     1501 cgtaatactc ctgatcct
//
LOCUS       DATIQF010000482         1576 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_175097,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000482 DATIQF010000000
VERSION     DATIQF010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175097"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..779)
                     /locus_tag="VLL95_07945"
     CDS             complement(<1..779)
                     /locus_tag="VLL95_07945"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013362.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HSR38831.1"
                     /translation="MLPPDFLKSLASLPGLDLQAFIGVHQEEQAPTSIRINPIKTSAI
                     NALFEGTHAVPWSRLGHYLPDRPAFALDPLWHAGAYYVQEASSMVIEQVWHQWMAPNN
                     QNLKVLDLCAAPGGKSTHLLSLLGEQDLLVSNEVIGSRTNVLLENITKWGYANSMVTN
                     NDPADFSKLEGLFDMIVVDAPCSGSGLFRRDHAAAEEWSLDAVNLCQKRQQRILADVW
                     PALKEEGILIYTTCSYSEAEDETVLDWLLEHFGATSLQVEM"
     gene            872..1195
                     /locus_tag="VLL95_07950"
     CDS             872..1195
                     /locus_tag="VLL95_07950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38832.1"
                     /translation="MDPEANDSSSQQLKYQVTIHFEMDENFMSLVPPHRTYINYLINK
                     NIIDSYTVSLESMRSWVVMNGASKQEIMSLLEKSPLFKYWTIEIDELYVVDGQPYRLP
                     ALQPN"
     gene            1292..1366
                     /locus_tag="VLL95_07955"
     tRNA            1292..1366
                     /locus_tag="VLL95_07955"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1327..1329,aa:Val,seq:tac)
     gene            complement(1394..>1576)
                     /locus_tag="VLL95_07960"
     CDS             complement(1394..>1576)
                     /locus_tag="VLL95_07960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38833.1"
                     /translation="LLVAKPGYYFVEPGVGQIAVDDLEQAGINGLYFFRELHKCEKRK
                     ESGNKPNKYSQMEWRK"
BASE COUNT          402 a          420 c          370 g          384 t
ORIGIN      
        1 ttcatctcca cctgcaacga cgttgccccg aaatgctcca gcaaccaatc caacaccgtc
       61 tcatcttctg cttcagaata actgcaggtg gtgtagatca aaatgccctc ttctttcaat
      121 gccggccaca catcggccag gatgcgctgc tgtcttttct ggcaaagatt gacggcatcc
      181 aggctccatt cttcagcagc ggcatgatcg cggcgaaaaa ggccactgcc tgaacagggt
      241 gcgtctacca cgatcatatc aaacaaccct tccagttttg aaaaatcggc gggatcatta
      301 ttggtgacca tgctgttggc atagccccat ttggtgatgt tttccaacaa cacattggtg
      361 cggctgccaa tcacctcgtt gcttaccagc aggtcctgct cacccagcag cgaaagcaaa
      421 tgcgtggatt ttccccccgg cgctgcgcac aggtccagca ccttcaggtt ttgattgttg
      481 ggtgccatcc actggtgcca aacctgctct atcaccatgc tgctggcttc ctgcacataa
      541 taggcaccgg catgccacag gggatcgagg gcaaatgccg ggcgatcggg caggtaatgc
      601 cccaaccggc tccagggcac ggcatgggta ccctcgaaca aagcattgat cgcacttgtc
      661 tttatggggt tgatccggat ggaagtggga gcctgttctt cctggtgcac accgataaag
      721 gcctgcagat caaggccggg cagggacgct aatgatttca gaaaatcggg aggcagcatg
      781 gcaggaaatg gttaattcgt tccggtgcag cgaaaatatc cgaaatgtcc tcttattttg
      841 tttgaaaccg ggaaaccatc attgaaatac catggaccct gaagcgaacg atagcagctc
      901 acaacaattg aaataccagg taaccatcca ctttgaaatg gatgagaact tcatgtcgtt
      961 ggtacctccc caccgcactt atatcaatta tctcatcaac aagaacatta tcgacagcta
     1021 cacggtgagc ctcgaaagca tgcgcagctg ggtggtgatg aatggcgctt cgaaacagga
     1081 gatcatgtcg ctgctggaaa agtcgccatt gtttaaatac tggaccatag aaattgatga
     1141 gttgtacgtg gtagatgggc agccctaccg gcttccggcc ctgcaaccca attaggtttc
     1201 agcccccgtt tgccgacccg gaaaaaaaat tttgcagtta caattagccc cctatttttg
     1261 cactcccaaa acgatacagg ggtatcaaaa agggagcata gctcagctgg tttagagcat
     1321 ctgccttaca agcagagggt ccttggttcg aatccgagtg ctcccacaaa aagtcaccga
     1381 aatggtgact tttttattta cgccattcca tctgcgaata tttattaggc ttgttacctg
     1441 attcttttct tttttcgcac ttgtgcagtt cccggaaaaa atacaagcca ttgatgccag
     1501 cctgttccaa gtcgtcaacc gcgatttggc caacacctgg ttcgacaaaa tagtaccctg
     1561 gtttcgctac cagcaa
//
LOCUS       DATIQF010000483         2539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_8016, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000483 DATIQF010000000
VERSION     DATIQF010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2539
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8016"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            276..659
                     /locus_tag="VLL95_07965"
     CDS             276..659
                     /locus_tag="VLL95_07965"
                     /inference="COORDINATES: protein motif:HMM:NF024759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HSR38834.1"
                     /translation="MMATENELSRVIVDTAFHIHTSLGPGLLESVYEEILWHELNALG
                     FNVSRQQGIPVFWNQMKMDLGFRADLIVENKVIIEIKSVEHIAPVHPKQLLTYLRLTN
                     LKLGLLINFNEALIKDGITRVVNNL"
     gene            complement(1061..2134)
                     /gene="dusB"
                     /locus_tag="VLL95_07970"
     CDS             complement(1061..2134)
                     /gene="dusB"
                     /locus_tag="VLL95_07970"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HSR38835.1"
                     /translation="MPANATHYLCATLPQIGNIQLPAFPLLLAPMEDVSDPPFRAVCK
                     ANGADLMYTEFISSEGLIRDAIKSRQKLDIFDEERPVGIQIFGGDEEAMAMSARIVET
                     VEPDLLDINFGCPVKKVVTKGAGAAVLKYVDLMVRLTAACVKSTRLPVTVKTRLGWDD
                     NSRNIVEVAERLQDVGIQALSIHGRTRAQLYKGQADWTLIAEVKNNPRIRIPIFGNGD
                     IDSPEKALEYQRRYGVDGIMIGRAAIGYPWIFNEIKHFVQTGQHLPPPNIQQRVAVIR
                     RHLHGSVKWKGDKLGILEMRRHYTNYLKGMPNIKEYRLKLVSLPTLEELDAVLDEIVQ
                     VYDGFVFEPRKIDMDAMAYSCDS"
     gene            complement(2138..>2539)
                     /locus_tag="VLL95_07975"
     CDS             complement(2138..>2539)
                     /locus_tag="VLL95_07975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38836.1"
                     /translation="INSTRTSSQFYFGYVSQYLLPLGKKFFGTATLLSKIGFTKLNER
                     IELGGNNDTNGELYRLSFGIQPGLAYQLSKRWIADVSIGNLIAANFEHSRSRNSYNAA
                     EYKNQNTSFNLNSIFSGNSSYLGIGFRYILR"
BASE COUNT          617 a          569 c          658 g          695 t
ORIGIN      
        1 tggcaacatt ggccgtaatc ccccttggtt tttacaaccg tatgcaggtg ccgaaatggc
       61 tggtggtgcc attggctttt atcactttgt ttagtggggg agtgatactg ggttggatta
      121 caggaatcaa aatgaaacac ataattaatc caaaggggaa ggttcctgca taggccagct
      181 gcttttgttt gagattttca tttgttagat ttatgtctat ctggcataag taccaggtga
      241 aataaaatat tcgtcccaac ttaaaccgca gatgcatgat ggctactgaa aatgaattat
      301 cccgagtaat agttgatact gcttttcata tccacacctc tcttggccct gggttgttag
      361 aatcagttta cgaagaaatt ctctggcatg agttgaacgc tctgggattc aatgttagca
      421 ggcagcaagg aataccggtt ttttggaatc agatgaaaat ggaccttggc tttcgtgctg
      481 atcttattgt ggagaacaaa gtgattattg aaataaaatc tgtggagcac attgcaccgg
      541 tgcatcctaa gcagttgctc acctacctgc gcctaaccaa tttaaagttg ggattgctga
      601 tcaacttcaa tgaagccttg atcaaagatg gcattacaag ggtggtaaat aatttatgaa
      661 cgtataagag atatttcccg caaagccgca gagccgccaa gtgggttgat tgaaatgttc
      721 tttgcgtaat tacgcctttg cgagagataa aagtgttcac gcaaagccgc agagtcgcca
      781 agtgggctga ttgaaatttt ctttgcgtct tggcgccttg gcgagagata aaagtgttca
      841 cgcaaagccg cagagccacc aagtggggga ttgaaatttc ctttgcgcct ttgcgagaga
      901 ttaaagtgtt cacgcaaagc cgcagagccg ccaagtgggc tgattgaaat tttctttgcg
      961 tctttgcgcc tttgcgagag ataaaagtgt tcacgcaaag cccagagcca ccaagtgggg
     1021 gattgaaatt tcctttgcgc ctttgcgcct ttgcgagaaa tcagctatcg cagctgtacg
     1081 ccatcgcatc catgtcaatc ttgcgtggtt caaatacgaa gccatcgtat acctgtacaa
     1141 tttcatcgag cacggcatcc agttcttcca gtgttggcag cgaaacgagc ttcaacctgt
     1201 actctttgat gttgggcatg cctttgaggt agttggtata gtgccggcgc atttccagga
     1261 tgccgagttt gtcccctttc catttcacgc tgccgtgcag gtgacgacga atcacagcca
     1321 cacgttgctg aatgttggga ggtggcaggt gctggccggt ctgcacaaag tgtttgatct
     1381 cgttgaagat ccagggataa ccaatggcag cccgaccgat catgatacca tctaccccgt
     1441 agcggcgctg gtattccagt gctttctccg ggctgtcaat atcaccgttg ccaaaaatgg
     1501 ggatgcggat gcgtggattg tttttcactt cagcgatcag ggtccagtcg gcctggcctt
     1561 tgtagagttg tgcccgggtg cggccatgaa tgctgagggc ctgtatgcct acatcctgca
     1621 ggcgttcggc cacttccact atgttcctgc tgttatcgtc ccaaccgagg cgggttttta
     1681 ccgtcacggg tagcctggtg cttttcacgc aagcggcagt gaggcgaacc atcaggtcca
     1741 catatttcag tacagcagcg ccggcgcctt tggtcaccac ctttttcacg gggcagccaa
     1801 agttgatgtc gagcagatcg ggttccacgg tttccacgat acgggcactc atggccatgg
     1861 cttcttcatc gccgccgaag atctggatgc ccaccggacg ttcctcatca aatatgtcca
     1921 gcttctgccg gcttttgatg gcatcacgga tgagcccctc actgctaatg aattcggtat
     1981 acatcaggtc ggcgccattg gccttgcata cggcacggaa gggagggtcg ctcacatctt
     2041 ccatgggggc gagcaacagc gggaatgccg gcaattgtat gtttcctatt tggggcaaag
     2101 tggcgcaaag atagtgggtt gcattggcag gcaatcgtta acgaaggatg tagcgaaagc
     2161 caatacccag gtaagagcta ttgccggaaa atattgagtt gaggttaaag ctggtgtttt
     2221 ggtttttata ttcagcagcg ttgtaactgt tgcgagaccg actgtgttcg aaattggctg
     2281 ctataaggtt gccaatagaa acatcggcta tccagcgctt actgagttgg tatgcaagtc
     2341 ctggttgaat gccaaaactc aatctataca attcaccatt ggtatcattg ttaccaccga
     2401 gttcaatccg ttcattgagt ttggtgaatc caattttgga tagcagggtt gcagttccga
     2461 aaaatttttt acccaaaggc agcaggtact gcgatacata cccaaaatag aattggctgg
     2521 aggtgcgtgt agaatttat
//
LOCUS       DATIQF010000484         3894 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_38180, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000484 DATIQF010000000
VERSION     DATIQF010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3894
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38180"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            153..392
                     /locus_tag="VLL95_07980"
     CDS             153..392
                     /locus_tag="VLL95_07980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38837.1"
                     /translation="MKKYQWAILLATMYLLIYVVLFDTGASLQVLSAMFVLSPVPILI
                     MVYQILRHANYTGKELEEGEEYGYADKKKEDLWFV"
     gene            complement(462..1292)
                     /locus_tag="VLL95_07985"
     CDS             complement(462..1292)
                     /locus_tag="VLL95_07985"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016208 - AMP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HSR38838.1"
                     /translation="MKTILVPTDFSATAKNSGIYAAHLAKYIGAKKIVLYNAYSMPLA
                     TEMSWAILQTEELQKASEANLDDFKTMMASFAGPEIELTSISDFGFFQERVAEVVKDH
                     KIDLIVMGITGGGKLEEVLIGSNTTHIVNHVDVPVLIVPPDATFKEPHRVGWACDYKE
                     VMHTTPAEAIKMALRQLNAKLIVVHNDPNPKAFDPDLFHNNVVVGELFERLVPEFVQV
                     SHEKFSDAIDEFVKTHHIDMLLVVPKKHNWLDSLFHRSHTKMLAFHSHVPLLCFRAIG
                     "
     gene            1443..2441
                     /locus_tag="VLL95_07990"
     CDS             1443..2441
                     /locus_tag="VLL95_07990"
                     /inference="COORDINATES: protein motif:HMM:NF040105.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR38839.1"
                     /translation="MLNAEDIRHLQEQVNTQYAVTERIKSQLHKLIVGQSDMIDRLLV
                     GLYCNGHVLLEGVPGLAKTLTIKSLARTLNLSFSRIQFTPDLLPADVVGTMIYNQQRG
                     EFVVRKGPIFAHFVLADEINRAPAKVQSALLEAMQEKQVTLGDTTYRLEEPFLVLATQ
                     NPLEQEGTYPLPEAQQDRFLLKVRVTYPTRQEELQIVRENIAGLESIALQPVATATDI
                     LHARQLARQIYMDEKLEQYLLDIVWATREPAKAGLPKLESMLSYGASPRASISMAQAA
                     RALALLHKRAYVTPDDIKQIAPDVLRHRIGLTYEAEAEEITVENVVTEILGKLKAP"
     gene            2495..2860
                     /locus_tag="VLL95_07995"
     CDS             2495..2860
                     /locus_tag="VLL95_07995"
                     /inference="COORDINATES: protein motif:HMM:TIGR02436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four helix bundle protein"
                     /protein_id="HSR38840.1"
                     /translation="MTSYKELEVWKAAVALVKDVYSLTKHFPKEEQYGLTSQVRRAAV
                     SIAANIAESNGRQYKKDSLQLLHIARGSLYELDTLVTISRTVDLLDEDSQRSLEQQIT
                     ACLKLLNGFIRYMENSELK"
     gene            2916..3794
                     /locus_tag="VLL95_08000"
     CDS             2916..3794
                     /locus_tag="VLL95_08000"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HSR38841.1"
                     /translation="MSDLKTILKQVQLLELKSKRLSNHVFAGEYHSAFKGRGMMFKEV
                     REYSPGDDIRFIDWNVSARFGHPFSKVFEEERSLTVMLLLDMSGSNQLGSRGKSKRTL
                     MTELAAVLAFSAIGNNDKVGAVLFTGRVEKFIPPAKGREHVLYLLRQLISFESASVKT
                     NFQPPLKMLRNLMKQTCISFLISDFYAPDFEKELKATAIKHDCIAVHLFDQLEIALPA
                     NALIPLQDAETGEFRWMDTHHHGFNKAWQAHFAQRTNTLKQQILSCGWDYLRFRTDHD
                     YVPALQQFFINRIARR"
BASE COUNT         1045 a          979 c          960 g          910 t
ORIGIN      
        1 ggtaagaaca tgaatgaaga ttacagttac ggaggcgtgt tcaataccag cagcaaggaa
       61 aagaccgcct ccattacgct gcgggccgaa tacaaggtgc agtgaccaca accaactgct
      121 ttgattgatt gttaaatgac aaagcaggct ttatgaaaaa gtatcaatgg gccatcttgc
      181 tggccaccat gtatttgctc atctatgtag tgctgttcga taccggcgct tcgctgcagg
      241 ttttgtcggc catgtttgtc ctgtcgcccg ttcccatcct catcatggta taccagatat
      301 tgcgccatgc caactatacc ggcaaggaac tggaggaagg agaggaatac gggtatgccg
      361 acaaaaagaa ggaagacctc tggtttgtgt gagactgccc ggatagcaaa atgcctgcac
      421 taaaagtgtg caggcatttt tcattttcat tgatcactgt tttatccaat agcccggaaa
      481 cacaacagcg gcacatggct gtgaaaggcc agcatcttgg tatggctgcg atgaaaaagc
      541 gaatcgagcc agttgtgctt cttaggcacc accagcagca tgtctatatg gtgtgtcttt
      601 acaaattcat caatggcatc cgagaatttt tcatgcgata cctgtacaaa ctcaggaacc
      661 aagcgttcaa acaactctcc aaccaccacg ttgttgtgga ataggtcggg gtcgaaggct
      721 ttcgggttgg ggtcgttgtg taccacgatc aatttggcat tcagttgtcg cagcgccatc
      781 ttgatggctt ctgccggcgt ggtatgcatc acttccttgt aatcgcaggc ccaccccacc
      841 cggtgcggtt ctttgaaagt ggcatcaggc ggcacaatga gtaccggcac atccacatgg
      901 ttgacaatat gggtagtgtt gctgccgatc agcacttctt ccagtttgcc gcctccggta
      961 atgcccatca cgatgaggtc gattttatga tccttcacta cttcagctac cctctcctgg
     1021 aaaaagccaa aatcagagat gcttgtcaat tctatttccg ggccggcaaa tgaggccatc
     1081 atggttttga aatcgtcaag gttggcttcg ctggctttct gcaattcttc agtttgcaga
     1141 atggcccaac tcatttcagt agccaatggc atggaatatg cattgtaaag gacgatcttc
     1201 tttgccccaa tgtatttggc caggtgagca gcataaattc cgctgttttt ggcggtggca
     1261 gaaaaatcgg tgggtacgag tatggttttc attttaccgg cttttggcca caaaatattc
     1321 attaactgca agttgctgca tgacgaaaat caagcacact gttaataatc agccccgatg
     1381 atgaggtttg tacaggtggc agcaggcttc ccttattttc actgctcaaa acacaggatt
     1441 acatgttgaa tgccgaggat atccgacacc tgcaggaaca ggtgaatacg caatacgccg
     1501 ttacggaacg catcaaaagc cagctgcaca aactcatcgt gggccagtcc gatatgatcg
     1561 accgcctgct ggtgggattg tattgcaacg gccacgtgtt gctggaaggc gtgccggggc
     1621 tggccaaaac gctgaccatc aaaagcctgg cccgcaccct caatctcagt ttcagccgca
     1681 tccagtttac ccccgacctg ctgccggccg atgtggtagg caccatgatc tacaaccagc
     1741 aacgcggaga atttgtggtg cgcaaaggcc ccatcttcgc ccactttgtg ctggccgacg
     1801 agatcaaccg ggcgccggcc aaagtgcaaa gcgccctgct ggaagccatg caggaaaaac
     1861 aggtgaccct tggcgacacc acctaccgcc tcgaagaacc cttcctggtg ctggccacgc
     1921 aaaacccgct ggagcaggaa ggcacctatc ccctgcccga agcgcaacaa gaccgctttc
     1981 tgctgaaagt gcgggtgacc tatcctaccc ggcaggaaga actgcagatc gttcgtgaaa
     2041 acatagccgg gctggaaagc attgcgctgc agcctgtggc caccgctacc gatatcctgc
     2101 atgcccgaca actggccagg cagatataca tggatgaaaa actggagcaa tacctgctgg
     2161 atattgtgtg ggccacccgt gaacccgcca aagctggtct tcccaaactc gaatccatgc
     2221 tcagctatgg cgcatcgcca cgggccagca ttagtatggc acaagccgcc cgggcattgg
     2281 ccttgctgca caagcgtgcc tacgttacac cagatgatat caagcaaatt gcgcctgatg
     2341 tattgcgcca tcgcattgga cttacgtacg aagcggaagc agaagaaata acggtagaaa
     2401 acgtggtaac ggaaatattg ggaaaattga aagccccttg attgttgttt gttgttggtt
     2461 gtttgttgtt agtaagataa caccccgaaa aagtatgact tcatacaaag aactcgaagt
     2521 gtggaaagct gcagttgcgt tggtgaaaga cgtttactca ttaaccaaac actttccgaa
     2581 agaggaacaa tacgggctta ccagccaagt cagaagagct gcagtttcca ttgccgcgaa
     2641 catagcagag tcaaatggcc gacaatacaa aaaggatagt ttacaactgt tgcatattgc
     2701 ccgagggtcc ttatatgagc tggatacatt ggttacaata tcacgaaccg tagacctttt
     2761 ggatgaagat tcacaaagat cattagaaca gcaaatcaca gcgtgcctga agctattaaa
     2821 tggcttcatt cgatacatgg aaaactctga attgaaataa accctgtagt tggcttttca
     2881 ccaacaacaa tcaaccaaca acaatcaact agcctttgtc cgatctcaaa accatactaa
     2941 aacaagtaca actcctggag ctgaaatcaa agcgcctctc gaatcatgta tttgcgggtg
     3001 aataccattc ggcattcaag ggcaggggca tgatgttcaa ggaagtgcgg gaatacagcc
     3061 ccggcgacga catccggttc atagactgga atgtgagtgc ccgctttggt catcccttca
     3121 gcaaagtgtt tgaagaagag cgatcgctga cagtgatgct actgctggat atgagtggca
     3181 gcaatcaact gggcagccgc ggtaaaagca aacggacatt gatgactgaa ctggcagccg
     3241 tgcttgcttt ttcggccatc ggcaacaacg ataaggtagg agcagtgctg ttcacaggcc
     3301 gcgtcgaaaa attcatcccg ccggcaaaag gccgggaaca tgtgttgtac ttattgcgac
     3361 agctgatctc ttttgaatcg gccagcgtca aaaccaattt tcagcctccg ttgaaaatgc
     3421 tgcgcaacct gatgaagcaa acctgcatca gctttttgat cagcgatttt tatgcccccg
     3481 attttgaaaa agaactgaag gccaccgcca tcaaacacga ttgcattgcc gtgcatttgt
     3541 ttgaccagtt ggaaatagcg ttgccggcca acgccctcat tccgctgcag gatgccgaaa
     3601 ccggcgaatt tcgttggatg gatacgcacc accatggctt caacaaagcc tggcaggccc
     3661 attttgcgca acgcaccaac accctcaagc aacaaattct ttcctgtggc tgggactacc
     3721 tgcgattcag gacagatcac gactacgtgc cagcgctgca acaatttttc atcaaccgaa
     3781 tagccaggcg atagcatgat gaaacacgta tggctgcaaa tattgggtgg gctgttcctg
     3841 gtatcggcat cggcgcaggt aacggtggtg ccggaaaaaa aggaaattgc tccc
//
LOCUS       DATIQF010000485         2222 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_8025, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000485 DATIQF010000000
VERSION     DATIQF010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2222
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8025"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2222
                     /locus_tag="VLL95_08005"
     CDS             <1..>2222
                     /locus_tag="VLL95_08005"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR38842.1"
                     /translation="MNLNNFTIKAQEVIAASQQVAFNHESVNIETEHILKALLDQEDS
                     PVEFLLKKNNVSVNVLESKLDEAINRLPKAGAGATAAQSIGRDANTAVLRAGTVLKTF
                     GDEFVAPEHILLALLQGNDGTAKLLKEAGLTEKGLIAAVKELRKGDTIQSQTQETQFN
                     ALNKYAKNLNEMARQGKLDPVIGRDEEIRRTLHILSRRSKNNPILVGEPGVGKTAIAE
                     GLAMRIVNGDVPENLKSKVIYALDMGQLIAGAKYKGEFEERLKGVVKEVSTSDGEIIL
                     FIDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATTLNEYQKYFEKDKALERRF
                     QKVMIEEPSVEDAISILRGLKDRYETHHHVRIKDEAIIAAVELSQRYITDRFLPDKAI
                     DLIDESAAKLRLEMNSMPEELDKLERQIRQLEIEREAIKRENDEVKLKELNTEIANLA
                     VSRDTFKAKWQQEKEIVEKVQSAKAAIEQLKLEAEQAERNGDYGRVAEIRYGKIQEQE
                     EQIREYSAQLDAISEKRLLKEEVDAEDIAENISKATGIPVSRMLQSEREKLLHLEDEL
                     HRRVVGQEEAIVAVSDAIRRSRAGLSDPRKPIGSFIFLGTTGVGKTELANALAEYLFD
                     DETMMTRIDMSEYQEKHTVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSVVLLDEIEKA
                     HPDVWNVLLQVLDDGRLTDNKGRVVNFKNTIIIMTRIDMSEYQEKHTVSRLVGAPPGY
                     V"
BASE COUNT          642 a          531 c          639 g          410 t
ORIGIN      
        1 atgaacctga acaatttcac gatcaaggcg caggaagtga tagcggccag ccagcaggtg
       61 gccttcaatc acgaaagcgt gaacatcgaa accgaacata ttctgaaagc cttgctggac
      121 caggaagatt caccagtgga gtttttgctg aagaaaaaca acgtcagcgt aaacgtgctg
      181 gagagcaaac tggatgaggc catcaatcgt ttgcccaagg caggcgccgg tgccactgcg
      241 gcccaatcca tcggccgcga tgccaacacg gctgtattgc gtgccggtac cgtactcaaa
      301 acatttggtg atgagtttgt agcacccgaa cacattttgc tggccttgtt gcaaggcaat
      361 gatggcaccg ccaaattgtt gaaggaagct ggccttaccg aaaagggttt gatcgcggct
      421 gtgaaagaat tgcgcaaagg agataccatc caatcgcaaa cacaggaaac acagttcaac
      481 gccttgaaca agtatgccaa gaacctgaat gaaatggcac ggcagggcaa actggacccg
      541 gtgattggtc gtgatgaaga gatccgaaga acactgcaca tcctgagccg ccgcagcaag
      601 aacaacccca tattggtggg cgaacccggc gttggtaaaa ccgccattgc cgaaggcctg
      661 gccatgcgta ttgtgaatgg cgacgtgccc gagaacctga agagcaaagt gatctatgcg
      721 ctggacatgg ggcaactgat tgccggtgcc aaatacaaag gcgaatttga agaacgcctg
      781 aaaggcgtgg tgaaagaagt gagcaccagc gatggcgaga tcattttgtt cattgatgag
      841 atccatacac tggtgggagc cggcggtggg gaaggcgcca tggatgcagc caacatattg
      901 aagccggcac tggcccgtgg cgaactccgt gccattggcg ccactacgct gaacgaatac
      961 cagaaatatt ttgaaaagga caaggcgctg gagcgtcgtt tccaaaaggt gatgattgaa
     1021 gagcccagcg tggaagatgc catttccatt ttgcgtggac tgaaagaccg ctatgaaacg
     1081 caccaccatg tgcgcatcaa ggatgaagcc atcatagccg ctgttgaatt gtcgcagcgt
     1141 tacatcaccg atcgtttcct gccggacaaa gccatcgacc tcatcgacga aagcgctgcc
     1201 aagctgcgcc tcgagatgaa cagcatgccc gaagaactgg acaaactgga aagacaaata
     1261 cgccagttgg aaattgaacg ggaggccatc aagcgggaga acgatgaggt aaaactgaaa
     1321 gaactgaata ccgagatagc caacctggcc gtgagccgcg atacgttcaa agccaagtgg
     1381 cagcaggaaa aggaaattgt agagaaagta caatcggcca aggctgccat tgagcagctg
     1441 aaactggaag ctgaacaagc cgaacgcaat ggcgattatg gccgggtggc tgaaatacgt
     1501 tacggtaaga tacaggagca ggaagagcag atcagggaat actccgccca gctggatgcc
     1561 atcagcgaaa agcgtttgct gaaagaagaa gtggatgctg aagacatcgc ggaaaacatt
     1621 tcaaaagcca ccggcattcc ggtgagcagg atgctgcaga gcgaaagaga aaagctgctg
     1681 cacctggaag atgaattgca ccgcagggtg gtggggcagg aagaggccat tgtggccgta
     1741 agcgatgcca ttcgcagaag ccgtgccggt ttgagcgatc cccgcaaacc cattggttcc
     1801 tttattttcc tgggcaccac cggtgtgggt aaaacagaac tggcgaatgc attggcagaa
     1861 tacctgtttg atgatgaaac catgatgacc cgcatcgaca tgagtgaata ccaggagaag
     1921 cataccgtga gccggctggt aggtgctcct cccggctatg taggctacga cgaaggcgga
     1981 caactgacag aagccgtgcg tcgcaagccc tacagcgtgg tattgctcga tgaaattgag
     2041 aaagcgcatc ccgatgtttg gaacgtattg ctgcaggtgc tcgacgatgg acgcctgacc
     2101 gataacaaag gtcgggtggt caatttcaaa aacaccatca tcatcatgac ccgcatcgac
     2161 atgagtgaat accaggagaa gcataccgtg agccggctgg taggtgctcc tcccggctat
     2221 gt
//
LOCUS       DATIQF010000486         4345 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_38234, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000486 DATIQF010000000
VERSION     DATIQF010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4345)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4345)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4345
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38234"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..201)
                     /locus_tag="VLL95_08010"
     CDS             complement(<1..201)
                     /locus_tag="VLL95_08010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38843.1"
                     /translation="MVKYEIRGTKYEGQTPRHTYGSHFVYPPELRTKNHKQKTKNNKS
                     KTYGNVQNRRNAQRNQVSRKAPD"
     gene            complement(219..1088)
                     /locus_tag="VLL95_08015"
     CDS             complement(219..1088)
                     /locus_tag="VLL95_08015"
                     /inference="COORDINATES: protein motif:HMM:NF014708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HSR38844.1"
                     /translation="MTNYKRIKQIAQAASPHMVGDGFKVRNFIGQPLWQDLSPFLMLD
                     YNEPWEVLPSKHPRGVDVHPHKGFETVTIAWDGKVSHEDSSGGKGTIGPGDVQWMTAG
                     SGILHKEFHAEDFSRQGGTFHMAQLWVNLPAQFKNTPPAYQDLLDKDMGRYELPDGKG
                     SVRIIAGSLNGVQGPARTFTRINIYDARLQAGADWQFSLPDGDTLGIVVMQGNIMIND
                     EKQARTGDMVVFSQHNTDVKIDSNNEAHLLVLSGEPIREPIAAYGPFVMNTKDEILEA
                     FEEFNSGKFGQLN"
     gene            complement(1168..1896)
                     /locus_tag="VLL95_08020"
     CDS             complement(1168..1896)
                     /locus_tag="VLL95_08020"
                     /inference="COORDINATES: protein motif:HMM:NF014708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HSR38845.1"
                     /translation="MTTNAAPQLTLHKAGTRGHANHGWLNSHHTFSFAGYYDQTRIHF
                     GALRVLNDDTVAAGMGFGKHPHDNMEIISIPTFGDLRHKDSMGNETVIRQGDIQVMSA
                     GTGIAHSEINANTDKEVRFFQIWVFPNQKNVQPRYDQLTMDVAKMKNNLLQVLSPNPD
                     DEGVWIHQDAWFSMGHLEAGFATTYSLHQPGHGVYAFVIEGDVTINGQALNRRDGLGI
                     EGVEKLEIKADSPAQLLLMEVPMK"
     gene            complement(2001..2453)
                     /locus_tag="VLL95_08025"
     CDS             complement(2001..2453)
                     /locus_tag="VLL95_08025"
                     /inference="COORDINATES: protein motif:HMM:NF013231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HSR38846.1"
                     /translation="MTLEEAIKTSGFQSQRHKAAVNLMFTAYQLKSRIAQVLKNYALT
                     PEQYNVLRILKGSHPSPLCVRDIACRMIERNSNVPRIADRLELKKLVKRTISPEDRRE
                     TLMQITPAGLNLLEIANKVIESTQDEIVAISESQAAELNQLLELMMKE"
     gene            complement(2528..3901)
                     /locus_tag="VLL95_08030"
     CDS             complement(2528..3901)
                     /locus_tag="VLL95_08030"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF024545.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HSR38847.1"
                     /translation="MNRGSRFLLGIVAILACNMALSQTKKVVADKIIGKVGDRIILKS
                     DIANAIADIQRNGGEVPPNPDCMLMEAELIKKALVLQAEKDSLVVEEADIEAEIENRI
                     RYFMRMYGGKEAVEEISGRSIYQMKEDFRKPLREQKLAEKMRGKILETVRITPVEVKE
                     YYEDIPKDSLPYYESELEIGQVVVFPKADREIESYTAKQLNDIKKQIESGARRFDQMA
                     KLYSEDPGSKDNGGQYTLNRADKFWDPVFLSTAFKLKEGQISNVVKSKFGLHIIQCVT
                     RNGDDAVVRHILMIPPVTEDELNKTKEKLDSARSKLIAGTITWSEAISKYSDDEDKFS
                     GGWLLGPDQSSMVTIDQVDKSMLPILKNLKPGQYSQPEVFANEQGKKGVRFIYLRTRT
                     EPHRENLKEDYNKIATRALEEKKQNILSTWFSQKIGSYYIFLDPSYGTCEMLKPWMDA
                     SAKRNGK"
     gene            complement(4030..>4345)
                     /locus_tag="VLL95_08035"
     CDS             complement(4030..>4345)
                     /locus_tag="VLL95_08035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38848.1"
                     /translation="HLKSNSIALIKNKQLVGKGCGQTSRIDALRHSIEKAKQFQFDLK
                     GAVLASDAFFPFDDCVKIAHAEGIEAFIQPGGSIRDKDSIDYCQQNGLAMVMTGMRHF
                     RH"
BASE COUNT          861 a         1055 c         1124 g         1305 t
ORIGIN      
        1 atcaggtgct ttacgcgaaa cttgatttcg ctgtgcattg cgtcgatttt gtacgttgcc
       61 ataggttttt gatttattgt ttttggtttt ttgtttgtgg tttttggttc gtaattctgg
      121 aggataaacg aagtgcgaac catatgtatg gcgtggtgtc tgaccttcgt acttcgtacc
      181 tcgtatttcg tacttcacca ttgggctttg tgcctggctt aattgagctg tccgaatttg
      241 ccactgttga attcttcaaa agcttccagg atctcatcct tcgtattcat cacgaaggga
      301 ccgtaagcgg caatgggttc gcgaatgggt tcgccactca gtaccagcag gtgcgcttca
      361 ttgttgctgt caattttcac atcggtgttg tgctggctga acaccaccat atcgccggtg
      421 cgggcctgtt tttcatcatt gatcatgatg ttgccctgca tgaccacaat gccgagtgtg
      481 tcgccatccg gcagagagaa ctgccaatcg gcgccggctt gcagcctggc atcgtatatg
      541 ttgatgcggg taaaagtgcg ggccggaccc tgaactccat tgagtgagcc ggcaatgatc
      601 cttaccgatc ctttgccgtc cggcaattcg taacgtccca tgtccttatc cagcaaatcc
      661 tggtaggcag gtggggtgtt tttgaattgg gcaggcaggt tcacccacaa ttgggccatg
      721 tgaaaagtgc cgccctgtcg gctgaaatct tccgcatgga actctttgtg caaaatgccg
      781 ctgccggctg tcatccattg cacatcaccg gggccaatgg tgcctttgcc accactactg
      841 tcttcgtggc tcactttgcc atcccaggcg atggttactg tttcaaatcc tttgtgcggg
      901 tgcacatcca ccccacgggg atgcttgctg ggaagcactt cccagggttc gttgtagtcg
      961 agcatcagga aaggactgag gtcctgccag agcggttgcc cgatgaagtt gcgcaccttg
     1021 aagccatctc ccaccatgtg cggcgaagcg gcttgtgcta tttgtttgat gcgtttataa
     1081 ttggtcattg tttttggatt ttggtttgtc gtacggtggc ttactctttc tccactcact
     1141 tcgtatttcg taccccgtac tttttactta tttcattggg acttccatca gcagcaactg
     1201 tgcagggctg tcggctttta tttccagttt ttctacgcct tctattccta ggccatcgcg
     1261 gcggttcagt gcttgcccgt tgatggtgac atcaccttca atcacgaagg cataaacacc
     1321 atggccgggt tggtggagtg aataggtggt ggcaaatcct gcctccaaat ggcccatgct
     1381 gaaccaggca tcctggtgga tccacacgcc ttcatcgtca gggtttggac tcagtacctg
     1441 cagcaggttg tttttcattt ttgccacgtc catcgtcagt tgatcgtagc ggggctgcac
     1501 atttttctgg ttgggaaata cccatatctg gaagaagcgg acctccttgt cggtattggc
     1561 gttaatttcg ctgtgcgcta taccagtgcc tgcgctcatc acctgtatat cgccctggcg
     1621 aatcacggtt tcattgccca tgctgtcttt gtggcgcagg tcgccaaatg tgggaatgga
     1681 gatgatctcc atattgtcgt gtgggtgctt gccaaaaccc atacccgctg ccacggtatc
     1741 gtcgttcagt acccgcaggg caccaaaatg aatgcgggtt tgatcataat agccggcaaa
     1801 actgaaagta tgatggctgt tcagccagcc atggttggca tgacctcttg ttccggcttt
     1861 gtgaagcgtg agttgggggg cggcattggt agtcataaaa tctccttttt tgttttattg
     1921 aaacaggtaa ttgttcaata ggttggacaa ccctttacaa ttccatgtat atacatatat
     1981 tatgccaaaa aaaatccctg tcattctttc atcatcaatt caagcaactg gttcaattcg
     2041 gcagcctgac tttctgaaat ggccacaatt tcatcctgcg ttgattcaat tactttgttg
     2101 gctatctcca gcaggttgag tcccgctggg gttatctgca tcaaagtttc cctgcggtct
     2161 tccggcgaaa tggtgcgttt caccagtttc tttagttcca aacggtcggc aatccttggt
     2221 acgtttgaat tgcgttcgat cattctgcag gcaatatccc ttacgcatag cggggaggga
     2281 tgactgccct tcaggatccg aagcacgttg tactgctccg gggtgagggc atagttctta
     2341 agcacctggg cgatgcggct tttcaactgg taggccgtaa acatgagatt gacagctgcc
     2401 ttgtggcgct ggctttggaa ccccgatgtt ttgatggcct cttccaatgt cataatgcaa
     2461 atgtatgtag atacatttaa ttttcaaaat ccttcaggaa gatttaagga gcaggcttcg
     2521 ggaggggcta ttttccgttg cgctttgcgc tggcatccat ccagggtttc agcatttcgc
     2581 aggtgccgta ggagggatcg agaaaaatat aatagctgcc aattttttgg gagaaccagg
     2641 tgctcaggat gttctgtttc ttttcttcca gggccctggt ggcaattttg ttgtagtcct
     2701 ctttcaggtt ttcgcgatgc ggttcggtgc gggtacgcag gtagataaag cggacgcctt
     2761 ttttgccttg ttcgttggca aacacttctg gctggctgta ctggccgggc ttgaggtttt
     2821 tcaatatggg cagcatgctc ttgtctacct ggtcgatggt caccatggaa gattggtcgg
     2881 ggcccagtaa ccagccgccg gaaaacttgt cttcgtcgtc gctgtatttc gatatggctt
     2941 cgctccaggt aatggtaccg gcgatgagtt tgctgcgggc actatccagt ttttctttgg
     3001 tcttgttgag ttcgtcttcg gttaccggtg gtatcatcag gatgtgacgc accacggcat
     3061 catcgccatt gcgggtaacg cactgaatga tgtgcaatcc gaatttcgac ttcaccacgt
     3121 ttgaaatctg tccttctttg agcttgaagg cggtggagag gaacacagga tcccaaaatt
     3181 tgtcggccct gttcaaggtg tactgtccgc cgttgtcctt gctgccgggg tcttcactgt
     3241 acagcttggc catttgatcg aaacggcgtg caccgctttc aatctgtttt ttgatatcgt
     3301 tgagctgttt ggccgtataa ctttcgattt cccggtcggc cttcggaaat actactacct
     3361 gcccgatctc caattcactc tcgtaatagg gaagactgtc tttggggatg tcctcataat
     3421 attccttcac ttccaccggt gtgatgcgca ccgtctccag gattttgccc cgcatttttt
     3481 cggccagctt ctgttctctc agcggtttgc gaaagtcttc cttcatctgg taaatggaac
     3541 ggcccgaaat ctcttccacg gcttctttgc ctccgtacat gcgcatgaag tagcgaatcc
     3601 ggttttcaat ttctgcttca atatctgcct cttccaccac cagggagtcc ttctctgcct
     3661 gcaaaaccaa tgcttttttg atcagctcgg cttccatcag catgcagtcg ggattgggcg
     3721 gcacttcgcc accattgcgc tgaatatcgg caatggcatt ggcgatatcg cttttcagaa
     3781 tgatgcggtc gcccactttg ccaatgatct tgtcggccac cactttcttg gtttgcgaca
     3841 atgccatgtt gcatgccagt atggccacta ttcccagtaa aaacctggat cctctgttca
     3901 tattcaaatg cacttagctg taaaaatagc gtttggccct tgcgggctgt gtggcggggc
     3961 agtttttaac aagttgagtg ggggaatggt gaatgagtca atgggtgaat aagggaatgg
     4021 agttagatgt tagtgcctga agtggcgcat gccggtcata accatggcca ggccattttg
     4081 ctggcaatag tcgatggaat ctttgtcgcg gatgctgccg cccggctgga tgaaggcttc
     4141 aatcccttcg gcatgggcaa ttttcacgca atcatcaaag gggaagaagg cgtcgctggc
     4201 cagtacggcg cctttcagat cgaattgaaa ctgcttggct ttttcaatgg aatgacgcag
     4261 ggcatcgatg cggctggttt gtccgcagcc cttgcctacc agctgcttgt ttttgatgag
     4321 ggcgatggaa ttgctcttga ggtgc
//
LOCUS       DATIQF010000487         4492 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_84006, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000487 DATIQF010000000
VERSION     DATIQF010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4492
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84006"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            150..914
                     /locus_tag="VLL95_08040"
     CDS             150..914
                     /locus_tag="VLL95_08040"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HSR38849.1"
                     /translation="MSHELIVVCIAAFAAGFIDAIVGGGGLVQTPAMLITFPQAPVAS
                     LLGTVKIPSFCGTAVAAYQYNKRIDIRWRLVIWIALAAFAAAMFGSYMVSVLNNSVLK
                     PIILIVLIVVALFTYTRKSLGQQHDEIPFDEALWKGITAGLLIGFYDGFIGPGTGSFL
                     VLIFITVIGHDFMHASAHAKMVNLATNLASIIYFGATGNILFHLAIPMAICNMAGGWA
                     GTKMALMRGNRFIRIFFLLVVSGTIIRFAWDIFFKS"
     gene            967..1863
                     /locus_tag="VLL95_08045"
     CDS             967..1863
                     /locus_tag="VLL95_08045"
                     /inference="COORDINATES: protein motif:HMM:NF017807.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSR38850.1"
                     /translation="MAGILLAILATLIWSGNFIIARSAATSIPPITLAFSRWACASLI
                     MLPLGWQAFMRDRKVVLQHWPSLAFAALAGVAVFNTLVYVAGHFSAAINLALIGTTSS
                     PIFSFILARIFLKEQIPFQRLLGLLICIAGILMLLSRGSWDVLMHFRFTEGDWWILGA
                     AFSFAVYNIMARKKPASIGPVSYLFSTFWMGTLMLLPFAIWEQSTHEAISWNGNLAGM
                     ILYLGAGTSVAAFFCWNAAIARLGAARAAIFGNLIPLFSSIEAVLILKEQITWVHLAG
                     MGIIITGLITANYKRSHIRQPA"
     gene            1913..2404
                     /locus_tag="VLL95_08050"
     CDS             1913..2404
                     /locus_tag="VLL95_08050"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR38851.1"
                     /translation="MQRKKAPLPIIVFSQFAGTSLWFVGNAVLPELKEALHLSQYAVS
                     LVTSAVMLGFVSGTLFSAILSIADRFSPVKVFLFSNIAGAIMNLLVIWLATSDVSLFV
                     LRFMVGFFLAGIYPVGMKIAGDWYDTRLGRAMGFLLGALVLAPRFLTCSKTAVSNCLG
                     RWC"
     gene            2395..3096
                     /locus_tag="VLL95_08055"
     CDS             2395..3096
                     /locus_tag="VLL95_08055"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR38852.1"
                     /translation="MVLMITSAMAVVGGLLMYWRVGDGPNRKKAGAFQWSAIPSIFSS
                     LPWRRAAFGYFGHMWELYTFWGFLPLMLALYGQIRQVDYNIPLLSFSIIASGVVSSIV
                     GGIAAQKFGSDKVATIALTISGTISLLSPFLFQMPPGLFFFFMFLWGLFVNPDSPQFS
                     TLVSFYAPAHLRGTALAIYNAIGFSITTISLYLFDRIFHSTGFWGGTHSFSLLALGAL
                     FGVPPMLRLMKRRTV"
     gene            3131..3856
                     /locus_tag="VLL95_08060"
     CDS             3131..3856
                     /locus_tag="VLL95_08060"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR38853.1"
                     /translation="MIRQRVIIIGGTTGIGRAMAELYLKNGHAVGVSGRTQSALDSLQ
                     EQFSNHAVAVQCFDVNSDDRRQQLQSLIDALGGMDVFIYCAGIGVVSHDLNEENEFNT
                     FSTNTTAFHDLTVFAFNYFLSQKQHGHIVGISSIAANRGLHAAPAYNASKAFMSNYLE
                     GLWFKARKMKAPISVTDIQPGFVATKMAQGNLFWVVPVSKAAKQIVAAIESKKKKAYI
                     SKRWRLIAWLMRLAPSSVISKTV"
     gene            3934..>4492
                     /locus_tag="VLL95_08065"
     CDS             3934..>4492
                     /locus_tag="VLL95_08065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38854.1"
                     /translation="MKRLLPAVLLLISYSLSAQSPANVNPEKILLPNGWGLTPVGKFL
                     PLGDLPLNLVLSPNGKYAAVTNNGQSIQSIQLLSTASQQLLHTVAVPKSWYGLQFSYD
                     SKWLYASAGHDNMILRYAISADTLRLKDSLVLGKPWPHKIGPAGLVLHKKKTLLYTIT
                     REDSALYVMDYEAKKLVHKQSIGAEG"
BASE COUNT         1007 a         1148 c         1099 g         1238 t
ORIGIN      
        1 aacttgcctt caattgttag gcaggcggct tcaggcgctt ttgaatggga aatagaccac
       61 agcagtaacg gcagtgccaa aaacaatcgt caaatggatt gctgtattct cgtgatattg
      121 cagccttcaa gaacagacgt aacatcagta tgtcccacga attaattgtt gtatgcatag
      181 cagcctttgc agccggcttt attgatgcca tagttggcgg tggcggactg gtgcaaacgc
      241 ccgccatgct catcaccttt ccacaggctc ccgtggccag tttgctgggc actgtcaaga
      301 tcccttcgtt ttgtggcacg gcggtggccg cttatcaata caacaagcgc atcgatatcc
      361 gatggagatt ggtgatctgg attgcgctgg cagcctttgc ggcagccatg tttggttcgt
      421 acatggtaag cgtgctgaac aattccgtac tgaagccgat catcctgatc gtgctgattg
      481 tggtggcctt gttcacctat acccgcaaaa gcctgggcca gcagcatgat gaaatacctt
      541 tcgacgaagc tttgtggaaa ggcattaccg ccggcctgct gataggattt tacgatggct
      601 tcattggtcc cggtaccggc agtttcctgg tactcatctt catcactgtc atcggtcacg
      661 acttcatgca tgccagtgcc catgccaaaa tggtgaacct cgccaccaac cttgcctcta
      721 tcatttactt tggcgccacc ggcaatattc tttttcacct agccatcccc atggcaatct
      781 gcaacatggc tggtggttgg gcaggcacca aaatggcatt gatgcgtggc aaccgtttca
      841 tcaggatatt ctttctgctg gtagtaagcg gcaccatcat tcggtttgcg tgggatatat
      901 ttttcaaatc atgaagctgc ctgaaaactg tactttagga taatgtggca caagcaaaat
      961 caaaccgtgg cgggtatatt actggccatt ctggctacgc tcatctggag tggcaatttc
     1021 atcattgccc gcagtgccgc tacttcaatc cctcctatta cactggcatt ttcacgctgg
     1081 gcatgcgcct cactcattat gctgccttta gggtggcagg ccttcatgcg tgacaggaag
     1141 gtagtgctgc aacactggcc ctcgctggcc tttgccgcac tggcaggcgt ggcggtgttc
     1201 aacaccctgg tgtatgtggc aggacatttt tccgctgcta tcaatttagc actcatcggc
     1261 accacttcat caccgatatt ctcgttcata ctggcacgta ttttcctgaa agaacagatc
     1321 ccgtttcagc gattgcttgg gctgctcatt tgcatagcgg gaattctgat gttgctgagc
     1381 cgcggcagtt gggatgtgtt gatgcatttc cgttttactg aaggcgattg gtggattttg
     1441 ggcgccgcgt tttcatttgc cgtgtacaat atcatggcac gcaaaaagcc ggcttccatc
     1501 gggccggtga gttatttgtt cagcactttc tggatgggta cgctgatgct gcttcctttt
     1561 gccatttggg agcaaagcac acacgaagcc atttcgtgga atggaaacct cgcaggcatg
     1621 atcttgtacc tcggcgccgg cacctcagta gccgccttct tttgctggaa tgccgctatt
     1681 gccaggctgg gcgccgccag ggccgctata tttggcaacc tgatcccctt gttcagttcc
     1741 attgaagcgg tgctcatcct gaaagaacag atcacctggg tgcacctggc aggcatgggc
     1801 attatcatca ccggattgat caccgctaat tacaaacgtt cacacattcg gcaacctgcg
     1861 taacacaagt caccaaacct gatttcgaac gcttacattt ttgccaaata agatgcagcg
     1921 aaaaaaggct ccccttccga tcattgtatt ctcccaattt gcaggaacat cgctttggtt
     1981 tgtgggcaat gctgtattac ccgaactgaa ggaggccttg catttgtcgc aatatgcagt
     2041 aagccttgta accagcgccg tgatgctggg ttttgtgagc ggcactcttt tctctgccat
     2101 cctttccatt gccgatcgtt tttcacccgt caaggttttt ttgttcagca acattgcagg
     2161 tgctattatg aacctgttgg tgatttggct agccaccagt gatgtttcgc tttttgtatt
     2221 gcgctttatg gtgggatttt tcctggccgg catttatccc gtgggcatga aaatagccgg
     2281 cgactggtac gacacgaggc tgggccgggc catgggtttt ttgctgggcg cacttgtgtt
     2341 ggcaccgcgt ttcctcactt gctcaaaaac cgcagtttca aactgccttg ggagatggtg
     2401 ctgatgatca cttccgccat ggctgttgtt ggtggcttgc tcatgtactg gagggttggc
     2461 gacgggccca accgaaaaaa agccggcgcc tttcaatggt ctgctatacc cagcattttt
     2521 tcctcactgc catggcgaag ggcagcattt ggttacttcg gacacatgtg ggaactctat
     2581 actttttggg gattcctgcc actcatgctg gcactgtatg gacagataag gcaggtggat
     2641 tacaacatcc cattgctcag tttcagcatt attgcttccg gtgttgtcag cagtattgtg
     2701 ggtggcattg ccgcacaaaa attcggcagc gataaagtgg caacgatcgc actaaccatt
     2761 tcgggtacca tcagcctgct atcgccattc ctgtttcaaa tgccccctgg tttgtttttc
     2821 tttttcatgt ttttgtgggg cttatttgtc aaccccgatt ctccgcagtt ctccactttg
     2881 gtatcctttt acgccccagc gcacctcagg ggcacagcac tggccattta caatgccatc
     2941 ggtttctcca ttactaccat cagcctttac ctgtttgatc gcatttttca cagcactggt
     3001 ttttggggag gcacgcacag tttcagcctg ctggctttgg gtgctctttt cggcgttcct
     3061 cccatgttaa gattgatgaa aagaagaact gtttgaaaac ccgtttgcat tgtcctgcta
     3121 atttagttgc atgatcaggc agcgtgttat cattattggc ggcactaccg gcattggcag
     3181 ggccatggca gagttgtatt tgaaaaatgg ccatgcagtt ggcgtcagtg gtcgcaccca
     3241 gtctgctctc gattctttgc aagaacaatt ttcaaaccat gcggtagccg tgcaatgctt
     3301 tgatgtaaac agcgacgatc gccggcaaca attacaatca ctgattgatg ctttaggtgg
     3361 catggatgtt ttcatttact gcgcaggtat tggcgtggta tcacatgatt tgaatgagga
     3421 gaacgagttc aacacgtttt ctaccaacac caccgccttt cacgatctca ccgtgtttgc
     3481 cttcaactac tttttgtcgc agaagcaaca tggccacatc gtaggcattt catccattgc
     3541 agccaacagg gggctgcatg cagcaccggc ttacaatgcc agcaaggcat tcatgagcaa
     3601 ctacctcgaa ggattgtggt tcaaagcaag gaaaatgaaa gcgcccatca gcgtgaccga
     3661 tattcaaccg ggatttgtgg caaccaaaat ggcccagggc aatctgtttt gggtggtacc
     3721 tgtgtcaaag gcagccaaac aaattgttgc cgccattgaa agcaaaaaga agaaagccta
     3781 catcagcaaa cgctggcgac tcattgcctg gctgatgcgc ctggcccctt cttcggtcat
     3841 tagtaaaact gtgtgatgaa accatcatca tcctactgag cagcccgccc gattcattta
     3901 ggcgctacct tcatggttac atctttgcga aacatgaagc gccttctgcc tgccgtactg
     3961 ttgctgattt catacagcct gtcggcccaa tctccagcca atgtcaatcc tgaaaaaata
     4021 ctgctgccca atggttgggg tcttacccct gtaggaaaat ttttgccgct gggtgatctg
     4081 ccgctcaacc tggtgctgag tcctaatggc aaatacgccg cagtaaccaa caacggtcaa
     4141 agcattcaat cgatacaatt gctcagcacc gcatcgcagc aattgttgca caccgtagcg
     4201 gttcctaaga gttggtatgg attacagttc agctacgaca gcaaatggct gtatgcttct
     4261 gcaggccacg acaacatgat ccttcgctat gccatttccg ctgatacttt gcggctgaaa
     4321 gacagcctgg tattggggaa gccatggccc cataaaattg gccctgccgg gttggtactg
     4381 cacaagaaaa agacactgct ctacaccatt acccgcgaag acagcgcctt gtatgtaatg
     4441 gactacgaag cgaaaaaact ggtgcacaag caatctattg gtgcggaggg at
//
LOCUS       DATIQF010000488         4013 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_205922,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000488 DATIQF010000000
VERSION     DATIQF010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4013
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205922"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..533
                     /locus_tag="VLL95_08070"
     CDS             <1..533
                     /locus_tag="VLL95_08070"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HSR38855.1"
                     /translation="GLRREIVQYVKVEIDLTLEEWGYHLQDLQINDITFDQAIMESMS
                     RVVASHNMKAAAENEGQALLITKTRAAEAEGNAIKISAEAEKQAAQLRGQGVALFRQE
                     VAKGMSEAAEELKQANLDTNVILFSMWTEAIKNFAEYGKGNVIFLDGSPEGMEQTMQR
                     IMGMMQLHAGKGQSTK"
     gene            621..1307
                     /locus_tag="VLL95_08075"
     CDS             621..1307
                     /locus_tag="VLL95_08075"
                     /inference="COORDINATES: protein motif:HMM:NF013760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HSR38856.1"
                     /translation="MILLYQALTDSLQNAAAAAAGSKSINLWSLLMQGGVLMIPLALL
                     FVAAIYFFIERNMALRKASRIDPNFMNIVRDHIINGNITAARSLTKNTDHPVARIIDK
                     GIQRIGKPIDAIEKSMENVGRIEMYNMERNINILSMIAGMAPMFGFLGTIIGMVQMFY
                     EINSTGRFELNTIAGGIYVKMITSATGLIIGLVAYLFYNFLNTQVDKTANKMEVASAE
                     FLDTFQEPHK"
     gene            1409..1804
                     /locus_tag="VLL95_08080"
     CDS             1409..1804
                     /locus_tag="VLL95_08080"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HSR38857.1"
                     /translation="MNIRRKLKAHAEVHTGALNDILFILLLFFLIVSTLANPNVVKVD
                     NPRGKNDTKVKQTIVVSIDKNRQMYLQQKPVTIDNLEAELRLMMEGKTDTPVIALNVD
                     TAAYYGDFFKALNIGKKLKAKVVANINGN"
     gene            1941..2720
                     /locus_tag="VLL95_08085"
     CDS             1941..2720
                     /locus_tag="VLL95_08085"
                     /inference="COORDINATES: protein motif:HMM:NF014658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis protein"
                     /protein_id="HSR38858.1"
                     /translation="MEQQKIKVGAVRYLNTKPLLYGMDKLPVEDRIELSTDYPSAVAG
                     RLLEGSIDIGLVPVAVIPEMPEYYIDADFCIGATGPVASVCLFSQVPVGQIETVVLDY
                     QSRTSVMLVQVLLRHFWKHKVKFVQALPGFEQHIDGKTAAVVIGDRALEMRKEFLYVY
                     DLAEAWKKFTGFPFVFAAWIANKPLPKEFMMAFNEANQYGLERLDEVIAQQPPSSYNL
                     KNYYTENISYVLDDEKRAGLQLFLKYVKELREAGQYELVAE"
     gene            2797..3615
                     /locus_tag="VLL95_08090"
     CDS             2797..3615
                     /locus_tag="VLL95_08090"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: protein motif:HMM:NF006054.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004731 - purine-nucleoside phosphorylase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HSR38859.1"
                     /translation="MNLINKLNETTAVIREYFGEAPEIGIVLGSGLGNFKANMKVACE
                     IPYEDIPHFPLTTVEGHGGSLIFGTMSGKTVVCMAGRFHFYEGYAPEDVAFPMRVMKW
                     LGVKTVLLSNAAGGMNPAFHVGDLMIINDHISLFQQNPLIGPNLEELGPRFPDMSEPY
                     SHELIAKAKAIAAGLEIPVHEGVYAGVTGPTFETRAEYKMLHILGADAVGMSTVQEVI
                     VARHMGLPVFALSVITDLGIRDQLNTITHHEVLEAAAAAEPKMTAIFKALIAQL"
     gene            3654..>4013
                     /locus_tag="VLL95_08095"
     CDS             3654..>4013
                     /locus_tag="VLL95_08095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38860.1"
                     /translation="MPACWQAGVTHFIPIILLSISRTIAFTWLVCSILLFVAKEGGAQ
                     MPKNMRMDSQGRMMGPNQMKGGDSLKQRNNSEDSITIFYRMFDSSRIRFIDSSVGEFT
                     NRFPLPNDHLYLGALGAA"
BASE COUNT         1089 a          988 c         1012 g          924 t
ORIGIN      
        1 tgggtttgcg aagggaaatt gtgcaatatg taaaagtgga aattgatctt acactggaag
       61 agtggggcta ccatttgcag gatctgcaga tcaacgatat cacgtttgac caggcgatca
      121 tggaaagcat gagcagggta gtggccagtc acaacatgaa ggccgctgcc gaaaatgaag
      181 gccaggcctt gctgatcacc aagacccgcg ccgccgaagc cgagggtaat gccatcaaga
      241 tttctgccga agcagaaaag caggcagccc agttgcgcgg acagggtgtg gctctcttcc
      301 gccaggaagt ggccaagggt atgagcgaag ccgccgaaga actgaagcag gccaacctcg
      361 atacgaacgt gatccttttc agcatgtgga cggaagccat caagaacttt gccgagtatg
      421 gcaaaggcaa tgtcatcttc ctcgatggca gccccgaagg aatggaacaa accatgcagc
      481 gcatcatggg catgatgcaa ttgcatgccg gcaagggcca atcgaccaaa tagaaaaatt
      541 cgttaataca cgttgttgca gtatccaatt ataatttcca accgtcacat tcgttgttac
      601 atcaattagc tgaatagttc atgatattac tgtaccaggc gcttactgat tcgttgcaaa
      661 atgcagccgc tgcggctgcc ggttccaaga gtatcaatct ttggagtttg ttgatgcagg
      721 gcggcgtgct catgataccg ctggcattgt tgtttgtggc tgccatttac tttttcatcg
      781 aaagaaatat ggcgctgcgc aaggcctccc gcatcgatcc caacttcatg aatattgtga
      841 gagaccacat catcaacggc aacattactg ctgcccggtc tcttaccaag aacaccgacc
      901 acccggtggc acgcatcatc gacaaaggca ttcagcgcat tggcaaaccc attgatgcca
      961 ttgagaaaag catggagaac gtgggacgca ttgagatgta caacatggag cggaacatca
     1021 acatcctatc gatgattgca ggcatggcac caatgtttgg cttcctgggt accattatcg
     1081 gcatggtgca aatgttttac gaaatcaaca gcactggtcg attcgaactc aatacaatag
     1141 ccggaggtat ttatgtgaaa atgatcacct ctgctaccgg gcttatcatt gggttggtgg
     1201 cctacctttt ttacaatttt ctcaacacgc aggtagacaa aaccgccaac aaaatggaag
     1261 tggccagcgc tgaatttttg gatacgtttc aagagccgca caaataataa tgatgaatga
     1321 tgaatgatga atgatgaatg aggaatgctg cattaactaa caacccaaaa ctgcgaacct
     1381 caaacaccaa acaacaagca actaaccaat gaatatccgc cgcaaactga aagcacatgc
     1441 agaggtacat acaggagcac tcaacgatat cctgtttatc ctgttgctgt tctttctcat
     1501 tgtaagtacg ctggccaacc ccaatgtggt gaaggtggac aatccccgcg gcaagaatga
     1561 caccaaggtg aagcaaacca tcgtggtgag catcgacaaa aaccgccaga tgtacctgca
     1621 gcaaaagccg gtgaccatcg acaatcttga agcagagttg cgcctgatga tggagggcaa
     1681 aaccgatacc ccggtcattg ccctcaatgt ggataccgct gcctattacg gcgacttttt
     1741 caaagccctg aacattggca aaaagctgaa agccaaagtg gtggccaata tcaatggcaa
     1801 ctagcggcca ggaagcattg gcatattgtt aaagttgccc ttaactctct ctgtaccatc
     1861 catttcccga attactgaag accatagcct tgggcctgaa ggcttacctt tgcccacctc
     1921 aaaaaataca ggttagcgaa gtggagcagc aaaaaatcaa agtgggtgcc gtaagatatc
     1981 tcaacaccaa acccttgttg tatgggatgg ataaactgcc ggtggaagat aggatcgaac
     2041 tgagcactga ttaccccagt gcggtggcag gacgtttgct ggaagggagc attgatatcg
     2101 ggttggtacc cgtagcagtc atccccgaaa tgccggaata ttatatcgac gccgatttct
     2161 gcattggtgc caccgggcct gtggccagtg tgtgcctgtt cagccaggtg ccggtaggac
     2221 aaattgaaac ggtggtactc gattaccaaa gccgtacctc ggtcatgctg gtgcaggttt
     2281 tgttgcggca tttctggaag cacaaggtaa agtttgtgca ggcgcttccc ggcttcgaac
     2341 aacacattga tggcaaaacc gctgccgtgg tcattggcga cagggccctg gaaatgcgca
     2401 aggagtttct gtatgtgtac gacctggccg aagcctggaa aaagtttacc gggtttccct
     2461 ttgtgtttgc ggcatggatt gccaataagc ctttgccaaa ggaattcatg atggctttca
     2521 acgaggccaa ccaatatggc ttggaaaggt tggatgaagt gattgcgcag cagccgccat
     2581 cgtcctacaa tctcaaaaac tattacacag aaaacatcag ctatgtgctc gatgatgaaa
     2641 agcgggccgg tttgcaactg ttcctgaaat acgtgaagga gttgagagaa gccggccagt
     2701 atgaactggt ggcagaatga aagccgccac acaactgttt tttgctattt tcaatagcac
     2761 aacttttatc gcattcgaaa tatccatacc aacaagatga acctgatcaa caagcttaac
     2821 gaaacaactg ctgtcatccg tgaatacttt ggtgaagcac ctgaaatagg gattgtattg
     2881 ggcagtggcc tgggcaattt taaagccaat atgaaggtgg cctgcgaaat accctacgaa
     2941 gacatcccgc atttcccctt gacaacggtg gaaggccacg gcggttccct catttttggc
     3001 accatgtccg ggaagactgt tgtttgtatg gccgggcgtt ttcattttta cgaaggctat
     3061 gccccggaag acgttgcctt tcccatgcgg gtcatgaaat ggctgggcgt aaaaacggtg
     3121 ctgctcagca atgcggctgg cggcatgaac ccggctttcc atgtcggaga tctcatgatc
     3181 atcaacgacc acatcagcct gtttcagcaa aaccccctta tcggccccaa cctggaagag
     3241 ttaggccccc gcttccccga tatgagcgaa ccatatagtc atgaactgat tgcaaaggca
     3301 aaagccattg cggccggttt ggaaattcct gtgcatgaag gcgtgtatgc tggcgttacc
     3361 ggccccacct tcgaaacccg ggctgagtac aagatgttgc acattctggg tgccgatgcg
     3421 gtgggcatga gcactgtgca ggaagtgata gtagcccgcc acatggggtt gcccgttttt
     3481 gcactcagcg tgatcaccga cctgggtatt cgcgaccaac tcaataccat cacccatcat
     3541 gaagtgctgg aagccgccgc cgccgctgaa cccaaaatga cggccatctt caaagcactc
     3601 atcgcacaac tgtagttttt gggacgccgg cgatatatag gcattcagta tcgttgcctg
     3661 cctgctggca ggcaggtgtc actcacttca tccccatcat tctattgagc atttcccgta
     3721 ccatagcatt tacctggctg gtctgcagta tccttctttt tgtagctaag gaaggtgggg
     3781 cacaaatgcc caaaaacatg cgcatggaca gccagggacg catgatgggc cccaaccaaa
     3841 tgaagggggg cgatagcttg aagcagcgga acaacagtga agacagtatc accatcttct
     3901 accgcatgtt cgatagcagc cgcattcgct ttatagattc atcggtagga gaattcacca
     3961 atcgattccc tctccccaat gaccacctgt atctgggggc actgggggca gct
//
LOCUS       DATIQF010000489         2477 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_236298,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000489 DATIQF010000000
VERSION     DATIQF010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2477)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2477
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236298"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..917)
                     /locus_tag="VLL95_08100"
     CDS             complement(<1..917)
                     /locus_tag="VLL95_08100"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSR38861.1"
                     /translation="MQESLAILSEAVQRDLMVDQLRQIARQEKSIPGSVEYDMRRFVR
                     MPGWQVDDIGMMEYTFVDKGSPENALELKFCVSGKAYCDDDECEEGVSCKKTGLSNCK
                     DEIDTVDIYSFRFTSTYLQQFASTKAAVSEAERYLSFEHDQTISHIIPLCNKNRVILA
                     SLFNHKYSGALENIFLNSQIQFLLVYSMDCLFGEGDRDKVYQCKFLEDERGRNAIAQA
                     REILLQHIGDPITIKELARKVATNECYLKKGFKEMFGTTIFDFYQSQRMEHAKYLLYD
                     KGLSVTDVSALLGYSSISHFSTAFKKHTG"
     gene            complement(1003..1749)
                     /locus_tag="VLL95_08105"
     CDS             complement(1003..1749)
                     /locus_tag="VLL95_08105"
                     /inference="COORDINATES: protein motif:HMM:NF022142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2490 domain-containing protein"
                     /protein_id="HSR38862.1"
                     /translation="MKGTIFNTSRVPLVSMAFCWLSSVGYGQADSTGLGSWNIANARF
                     QISRKWSAWGELQLRSLQFYNQFHYHETKGGFQYNLGEASSVLVGFGRYVTYSPGGNF
                     ESPIKNDELRTWLQFSMGNRFGRLRVEHRYRIEQRWTSEGYRNRFRYRLNLLMPLNKP
                     NVEAGTWYATTWNEIFLTNLQPHFERNRFFIGLGYEVTDPFTIQVGFLNQYDYELAIA
                     PLTKNFFQLSFLFDIKTQKSGRERHPSTVD"
     gene            1928..>2477
                     /locus_tag="VLL95_08110"
     CDS             1928..>2477
                     /locus_tag="VLL95_08110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38863.1"
                     /translation="MGRQIAQVMSHYGIEWLERPEREQEERVSKLLKNMDLKPGEVIA
                     DIGAGSGYHVVRMAPLGCHATSKVITVPISSWPGYEYLGLVASFGVDRRHGLTLDVVQ
                     YPDPQAIVHAYLRGDQPVAPLTTVEAVYLCERVPERCPVVVLVLDESRGADQLAVRND
                     VPSLKDLRGRTIAVTFSTLGPYV"
BASE COUNT          551 a          611 c          676 g          639 t
ORIGIN      
        1 atgcccgtat gctttttgaa ggcggtgcta aaatgagaga tgctggaata acccaacaag
       61 gcactcacat ccgtaacgct cagtccttta tcgtacaaaa ggtatttggc atgctccatg
      121 cgttggcttt ggtaaaagtc gaagatggtg gtgccaaaca tttctttgaa gccctttttg
      181 aggtagcatt cgttggtggc tactttgcgg gccagttctt tgatggtgat ggggtcgccg
      241 atatgctgca gcaatatttc gcgggcctgt gcaatggcgt tgcggccacg ttcatcttcc
      301 aggaatttac actggtatac tttgtcgcgg tctccttcgc caaacaggca atccatgctg
      361 tataccagca aaaattggat ctggctgttg aggaaaatgt tttccagggc gccggaatac
      421 ttgtggttga aaagactggc cagtatgacg cggttcttat tgcagagggg aatgatgtgc
      481 gaaatggtct ggtcgtgttc gaaactcagg taacgttctg cctcgcttac ggccgctttg
      541 gtgctggcaa attgttggag gtaggtgctg gtaaagcgga aactgtagat gtcgaccgtg
      601 tcaatctcgt ccttgcagtt ggacaagccg gttttcttac aggaaacccc ttcttcgcat
      661 tcgtcgtcgt cgcagtaagc tttgcctgaa acgcaaaatt tcaattccag ggcgttttcg
      721 gggcttcctt tgtccacaaa ggtgtactcc atcatgccaa tatcgtcaac ctgccagccc
      781 ggcatgcgca caaatcggcg catatcgtat tccaccgaac cggggatgct cttttcctgc
      841 ctggcgatct gcctgagctg atccaccatc aggtcgcgtt gtacggcttc cgataaaatg
      901 gctaatgatt cctgcatggg gcaaaattaa atgaattctg tttgtatgta caaatacccg
      961 ccggcccttg tcgaattctt gcaaaggctt aacagcaaat ggtcaatcga cggttgaagg
     1021 gtgtctttcg cgacccgact tttgggtttt gatgtcgaac agaaatgaaa gctggaaaaa
     1081 gtttttggta agcggggcaa tagctaattc gtaatcgtat tggttcaaaa acccgacctg
     1141 gatggtaaag ggatcagtga cttcgtagcc caggccaata aaaaagcggt tcctttcaaa
     1201 atgcggttgc aggttggtca gaaaaatttc attccaggtg gtggcatacc aggtgccggc
     1261 ttccacattg ggtttgttca gcggcatcag caggttaagg cgatacctga accggttgcg
     1321 atatccttcg ctggtccagc gttgttcaat tctataccgg tgctctaccc gaagccttcc
     1381 gaaccggttt cccatgctga actgcaacca ggttcgcaat tcatcgttct tgatggggga
     1441 ttcaaaattt cctcccgggg aataagttac gtatcggccg aagcccacca gcaccgaact
     1501 ggcttcgccc aagttgtatt gaaaaccgcc cttggtttca tggtagtgaa actggttgta
     1561 aaactgcaac gaccgcaatt gcagttcacc ccaggcactc cattttctgc tgatctggaa
     1621 tcgggcattg gcaatattcc aggagccaag tcccgtgctg tctgcctggc cgtaacccac
     1681 ggatgacagc cagcagaaag ccatcgaaac cagcggaacc cttgatgtgt tgaatattgt
     1741 tcctttcatc ctttcctttt tgtagctcct ccttcaacca acaaccgttc gatgctgttg
     1801 tctggagatg caaagaaata ttctgttggc attggtggcg atattgtgtt cttcgttttg
     1861 gcagccacat ctctacagca cccggggcca agccaattac gaccccaatg ggatcagaaa
     1921 atactacatg ggcaggcaga ttgcgcaggt aatgagccat tacggcattg aatggctgga
     1981 gcgcccggaa cgggagcagg aagagcgggt aagcaaactg ctgaagaata tggacctgaa
     2041 gcccggggag gttattgccg acattggcgc cggcagtggt tatcatgtgg ttcgaatggc
     2101 cccactgggg tgtcacgcca catccaaggt gatcacggtg ccgatctcca gctggcctgg
     2161 gtatgaatac ctgggtttgg tggcgtcatt cggcgtcgat cggcgccacg gactcacgct
     2221 ggatgtggtc cagtacccgg atccccaggc gattgtgcac gcgtatctgc gtggtgatca
     2281 gccggtggca ccgctcacca cggttgaagc cgtttatctg tgtgaacggg tgccggagcg
     2341 ttgcccggtg gtggttctgg tgctggatga atccagggga gctgatcaac tggcggtccg
     2401 caacgacgtg ccctcgttga aggacctgcg cggccgcacc atcgccgtga ccttctcgac
     2461 cctgggtccc tatgtgg
//
LOCUS       DATIQF010000490         2729 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_23423, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000490 DATIQF010000000
VERSION     DATIQF010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2729
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23423"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..326)
                     /locus_tag="VLL95_08115"
     CDS             complement(<1..326)
                     /locus_tag="VLL95_08115"
                     /inference="COORDINATES: protein motif:HMM:NF024923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HSR38864.1"
                     /translation="MHNYRFLPALVLLAGFLGCKSKEEKPVIVPDINVVAAGKLTVPV
                     FTDYVGETFGISDVNIRSRVSGYLTSIHYKEGQEVTKGQLLYVVDDRNIVARIDAAEA
                     QVAEAKT"
     gene            627..1271
                     /locus_tag="VLL95_08120"
     CDS             627..1271
                     /locus_tag="VLL95_08120"
                     /inference="COORDINATES: protein motif:HMM:NF019500.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel"
                     /protein_id="HSR38865.1"
                     /translation="MKYFLNAGTLLLLLTLSTLFIIPVLPDRLLPVFYPLCFTGIIIA
                     ASLSLERSKRFHVSAAIILSAMLLIAIIADLEWLQIISRSLQGIYFIIVVMALVREIA
                     SSRQVNTAVIVNAITAYFLLGMALSLVATIIAVKVPNAYNIDLMPLTHPQRYNSFREM
                     TYYTFITYTTTGYGDITPTAPASRSLAVVISSFGQLYIAIIIAMLMGKFTSASK"
     gene            1297..2394
                     /locus_tag="VLL95_08125"
     CDS             1297..2394
                     /locus_tag="VLL95_08125"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HSR38866.1"
                     /translation="MNPANDQSTKSYFTNAIGLLLLVFLLYALYNVLSAFFGVFSFAI
                     IFAVSFASLFEAMVKRLGNKRKLAGFVYGIFLVGIIAVPFGFLVDLLAGAIHDLRQFM
                     MNIEHTKIPSMPENVASIPVIGPKVAAFWAQLQADPKATVSAYQPQILEFSQHLLQSG
                     AGIAGTTLELIVGIIISAVVLTGGAAGLKPLKAVLSQLAGEQRADSIIDSSGKAIKGV
                     AIGVMGTAFIEALAMWIGLKIAGVPMGTLLTAVTFLLAVVQLGPLLVAIPVTIWLANQ
                     GQTGYAIFMGVWIVVLFVIDNVVKPILIGKSGKLPILVLFLGVIGGMTQWGFTGMFKG
                     AIILAVAYSLFQSWFENKAQESVTASAKAAG"
     gene            2433..>2729
                     /locus_tag="VLL95_08130"
     CDS             2433..>2729
                     /locus_tag="VLL95_08130"
                     /inference="COORDINATES: protein motif:HMM:NF013832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38867.1"
                     /translation="MKKFLKPSIFWLFVFIPITLLLEQTGASDPTIFFCSAMAIIPIA
                     KLIGESTENLAHYTGDAIGGLLNATFGNAPELIIGLIALHAGLYDMVLASIIGAI"
BASE COUNT          632 a          637 c          654 g          806 t
ORIGIN      
        1 gttttggctt ctgctacctg cgcttcagcg gcatcgatgc gggctacaat attccggtca
       61 tccaccacat acaacagctg tcctttggtc acctcctgtc cttctttgta atgaatactg
      121 gtgaggtatc cacttaccct gcttcggata ttgacatccg aaataccaaa tgtttcacct
      181 acataatcgg taaataccgg aacggtgagt ttgccggctg ccaccacgtt gatgtcagga
      241 acaataacag gcttttcttc tttgcttttg cagcctaaga aaccagcgag taaaacaagc
      301 gctggcagaa atcggtagtt gtgcatatgc tagttgatgg gttgaaaaag aatagtgttt
      361 aaaagtacag ggttggaccg ctgagagata atgactttta tcatcgccat gggcaggcgg
      421 aaattctgga tgggtttaga gtgagaggat ttcgagtgat atttatcatt gaagtttgtg
      481 gtgggcttag gatatcttgc ttgaaaataa gtgctttata aatagtttaa tcggtttgtt
      541 tcaatagctg cccggataaa tggatgaaac ttttcgggac cagcttcatc cgtttcagct
      601 aaaagcatcg aaagtcaatc agccagatga aatatttcct gaacgccgga accttactgt
      661 tgctacttac tctgagtaca ctttttataa tacctgtgct gcccgacagg ctgttgccgg
      721 ttttctatcc cctttgtttt accggcatca tcatcgccgc atccctttct cttgagcggt
      781 caaagcgctt tcacgtttcg gcggccatca ttttgtcggc catgctactg atagccatca
      841 ttgccgacct tgagtggttg cagatcatat caaggtcgtt gcagggcatt tatttcatca
      901 ttgtggtgat ggcactggtg cgtgaaattg cttcctcacg gcaggttaac acagcagtga
      961 ttgtcaatgc cattacagct tattttttgt taggaatggc tttgtcgctg gtagctacca
     1021 tcattgcggt gaaagtgccc aatgcctaca atatagattt gatgccgttg acgcatccac
     1081 aacgctacaa ttcatttcgg gagatgacct attacacatt cattacctat accaccaccg
     1141 gttacggtga tattacaccc accgcacctg cttcacgctc actggcagta gttatttcca
     1201 gctttggcca actgtacatt gccatcatca ttgctatgct gatgggcaag tttacctctg
     1261 cctccaaata atccgttcac cattaacaga acaaccatga accctgcaaa tgatcaatca
     1321 accaaatcgt atttcaccaa cgccatagga ctgctgctgt tggtgtttct tttgtacgca
     1381 ctgtacaatg tgctgagtgc gttcttcggc gtcttttctt tcgccatcat tttcgcggtg
     1441 tcatttgctt cgctattcga agccatggtg aaaagactgg gcaacaaaag aaaactggcg
     1501 ggctttgttt atgggatctt cttagtgggc atcattgctg ttccttttgg gttcctggtt
     1561 gatttgctgg caggcgccat tcatgacctg cggcagttca tgatgaatat tgagcatacc
     1621 aagattccat caatgccgga aaatgtagcc agcattccgg taattggccc taaagtggcc
     1681 gctttctggg cacaattgca ggctgacccc aaagccactg tgagcgccta ccaacctcaa
     1741 atacttgagt tttcgcaaca cctgctgcaa agcggtgcgg gcatagctgg cactaccctt
     1801 gagttgattg tgggcattat tatttctgct gtggtgctta ccggtggggc cgccggattg
     1861 aagccgctca aggcggtgct gagccaattg gcaggggaac aaagggccga ctccataatt
     1921 gattcttcag gaaaggctat caaaggcgta gctatcggtg taatgggaac ggcctttatt
     1981 gaagcgctgg ccatgtggat aggtttgaag attgcgggtg ttcccatggg taccttgctc
     2041 acggctgtta ctttcttgtt agccgtggtg cagctggggc ctttattggt agccataccg
     2101 gtgactattt ggctggccaa ccagggccaa accggctatg ccatttttat gggtgtatgg
     2161 atagtggtgc tgtttgtgat tgacaacgtg gtaaagccca tactcattgg caaaagtggt
     2221 aagctcccca tccttgtact ttttctgggt gtgattggtg gcatgactca atggggcttt
     2281 accggcatgt ttaaaggggc catcatactg gcagtggcct attccctatt ccagtcatgg
     2341 ttcgaaaaca aagcgcagga gagtgtcact gcttctgcga aggcagcagg ctagcagcga
     2401 gataattttg taccctatca actccactcc gcatgaagaa atttctaaag ccttcgattt
     2461 tctggctgtt tgtttttatt cccattaccc tgttgctgga gcaaacagga gccagtgatc
     2521 cgaccatatt tttctgctct gccatggcta tcattccgat agccaagctc attggtgaat
     2581 caaccgaaaa cctggcacac tacaccggcg acgccattgg cgggttgctg aatgccacgt
     2641 ttggcaatgc ccccgaactc attattggtt tgattgcttt gcatgcaggt ttgtatgata
     2701 tggtcctggc ctccattatt ggtgccata
//
LOCUS       DATIQF010000491         1710 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_145106,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000491 DATIQF010000000
VERSION     DATIQF010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1710
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145106"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..226)
                     /locus_tag="VLL95_08135"
     CDS             complement(<1..226)
                     /locus_tag="VLL95_08135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38868.1"
                     /translation="MKRSSPYSVLVVAVMVFIVAVVSCRHEPIVGSGGSNSGNNNNPP
                     FTGVCFESDLLPLIQSSCGKETRCHGVGSKE"
     gene            complement(238..654)
                     /locus_tag="VLL95_08140"
     CDS             complement(238..654)
                     /locus_tag="VLL95_08140"
                     /inference="COORDINATES: protein motif:HMM:NF024275.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38869.1"
                     /translation="MAKAITLKKALLVIGITAVLGMAYALYQWYKPARDVKDEDGIPV
                     TAQVLFDAYSQNETTANATYLNKAVQVTGEVSTVKANQEGKVVVTLKTADPMFGVQCT
                     MKEKVGTKVGEKVTIKGICTGFLMDVVLIDCVIMNE"
     gene            complement(906..1523)
                     /gene="recR"
                     /locus_tag="VLL95_08145"
     CDS             complement(906..1523)
                     /gene="recR"
                     /locus_tag="VLL95_08145"
                     /inference="COORDINATES: protein motif:HMM:TIGR00615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HSR38870.1"
                     /translation="MNFSSTLLENAVNEFAKLPGIGKKTALRLVLHLLKTEQSQVELF
                     ADTISQMRREIRFCRQCHNVSDSDVCNICASPMRKQEMVCVVESIRDVMAIEATQQYN
                     GTYHVLGGVISPLDGIGPDQLQIDSLISRVQSGGIAEVIFALNPNIQGDTTIYYIQKK
                     LADTGVKITAISRGIAFGGELEYADEMTLARSIQNRLPVEGLVRF"
BASE COUNT          417 a          448 c          392 g          453 t
ORIGIN      
        1 cttctttgga accaacacca tggcaccttg tttcctttcc gcaagagctt tggataaggg
       61 gaagtaaatc agactcgaag cagacgcctg tgaatggtgg gttattatta ttgccgctat
      121 tggaaccgcc actccccacg ataggttcat gccgacaaga aactacagca acgataaata
      181 ccatcactgc caccaccaat acactgtaag ggctgctcct tttcatagca taacttttta
      241 ttcattcatg atgacacaat cgatcaatac tacatccatc aggaaccctg tgcagatccc
      301 tttaatggtg accttctctc caactttggt gccaaccttc tctttcatgg tgcattgcac
      361 gccaaacatg gggtctgccg ttttcaaagt caccaccact tttccttcct ggttggcttt
      421 taccgtgctc acttcaccgg ttacctgcac cgccttgttg agataggtag cattcgctgt
      481 tgtttcattc tggctgtaag cgtcgaacaa tacctgggct gtcaccggga tgccatcttc
      541 gtctttaaca tcgcgggccg gtttgtacca ctggtataat gcataggcca ttcccaaaac
      601 ggcagtgatg ccaataacca gcaaggcttt tttgagggtg attgctttcg ccatggttcg
      661 gtttttatcg gttctgaaca aatagtctct tctttacaaa ggtcagtact cccgcccctt
      721 ccaaatcatg acttttactt gttctgcggc ttttatcaca accgggaacc aatattccgc
      781 tgaatcggga aaatcagaac ggtggttttc accgaaccgg gaaaaacagg acctgaatcg
      841 ggaggaagca gacagcattg gccaacctga tgcggcgaaa gttgactgaa caaggaaaat
      901 tcaaatcaga agcgaaccag cccttccacc ggcagcctgt tttgtatgct gcgggccagg
      961 gtcatttcat cggcatattc cagttcgccg ccgaaggcaa tgcctcggct gatggcggtg
     1021 atcttcacgc cggtatccgc cagttttttc tggatgtaat aaatggtggt gtcgccctgt
     1081 atgttggggt taagggcaaa tatgacttcc gcaatacccc ctgactgtac acgactgatg
     1141 agcgaatcga tctgcaactg gtcggggcca atgccgtcga gcggcgaaat gacgccaccc
     1201 aacacatgat aggtgccgtt gtattgctgc gtggcttcaa tggccatcac atcgcgaatg
     1261 ctttccacca cgcataccat ctcctgcttg cgcatggggc tggcgcaaat gttgcagaca
     1321 tcgctatcgc tcacattgtg gcactgccgg caaaacctga tctccctgcg catctggctg
     1381 atggtatcgg caaacaattc cacctgtgat tgctcggtct tgagcaaatg cagcaccagg
     1441 cgcaaagccg ttttcttgcc aatgccgggc agcttggcaa attcattcac tgcattttcg
     1501 agtaaggtgg aggagaaatt cattcgtgag ggaagataaa ggattagcct tgaaacctaa
     1561 gttgacggca aaatgaactt tttgtgtcaa ttgaactgca atgttgctcc aggctttaac
     1621 tcaacggttg ccccaggata gatcaacaag gagcgccact tgagatctct atcaacttga
     1681 accttacctt tctccactat aacatccgtg
//
LOCUS       DATIQF010000492         4747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_129805,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000492 DATIQF010000000
VERSION     DATIQF010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4747
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129805"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..534
                     /locus_tag="VLL95_08150"
     CDS             <1..534
                     /locus_tag="VLL95_08150"
                     /inference="COORDINATES: protein motif:HMM:NF013431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38871.1"
                     /translation="LLYELWESSLHCTYHVINKGAEEMLFSVGGHPAFALPLEDGLKY
                     EDYHLEFEQDEPLMRYKLQDGLISERTELLPSNGGRLVLHPSLFYEYAIVMKHLKSEK
                     VTLKADQGKHGLHFHYAGFPYLGIWAAKDAPFICIEPWCGHADNVGHDQQLETKEGIE
                     KLAPGASWQRTWMVDCF"
     gene            complement(535..1149)
                     /locus_tag="VLL95_08155"
     CDS             complement(535..1149)
                     /locus_tag="VLL95_08155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38872.1"
                     /translation="MQRRQTLIVACILICATTYGRPPVSSPLAKFSSAWNAPKYTAAN
                     TAKNLSYLSSQEKELIYLLNLVRMDPALFAQTVLPKQPVNEQSTYYQSLLKHLKEMKP
                     QPLLLPDSLCWVSAKCHAVSSGLQGYDGHDRITEECRKKEYFMGECCHYGYGNPLDFL
                     VSLLIDEGIPSLGHRRICLGGFQKIGVSIQPHSVYGNNAVLDFY"
     gene            complement(1298..>4747)
                     /locus_tag="VLL95_08160"
     CDS             complement(1298..>4747)
                     /locus_tag="VLL95_08160"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HSR38873.1"
                     /translation="DGGGKGSGQNLLSGTTSWVEKGPTNWNRTSGWNPGVGRLTSVAV
                     HPLDTTLIYVTSPGGGVWRSTTGGNSWTPLTDANGSWMNMFSVAVDPQNVNVVYAGSN
                     AAQVIKSVDKGNTWTSVGRLMSGTVSKILIHPTNSNIIFTAAQNGIFRSTDGGVSWTK
                     TYANSIEDIEFKPGDPNTMYATGPFNPSVIRSIDGGLTWVGLTATEGITNAARALVSV
                     SPADPNRVYVVQAFGNEFGRLYVSTNSGASFTVSVTGSAAGCTNFFGYETTGCGTGGQ
                     AGYDMAMCVNPNNANEIYIGGIIVFRSTDGGKTFAAQTAWSYPNSIGYNHADIHALEW
                     VRNSVYSGSDGGIYISTDRGDNWRDLSKGLGIRQFYRIANSKTNSQLFTGGAQDNGSS
                     LFKNGTWYDWLGADGMDGIISPFDENIIFGTSQYGQMYRSNNGGTSYTTLTKPSNGDW
                     VTPLVYHEANRAIYGGWTGVFKSYDNGNTWTNISGTSISTTIAALAVAPSDTNTIYAS
                     KSTAFYYSTNGGATWSSTTLPSTINAIAVSPINPRKLWVVCNSTSNRVFASTDGGATF
                     TNISGNLPALISRAVAVAADESVYVGLNVGMYYLAPNSTTWTNITGNLPTVAINDIDI
                     HAGAGLVRIGTYGRGVWERALEGSAISIPTCSAPTNLSSAEVVDTSARISWAAVSGAS
                     GYKVEFKAGSSTTWQVAAANTTNTSVILSGLTASTLYDWRVTTNCSTSASDVAAAQFT
                     TAATIINCGTPSGLSVSGLTETAATLSWTAVNGATAYSIDYKLSTSTTWTNFSQTYNS
                     TTLSLNGLNAGATYDWRVAAVCGTAASAYATSQFQLIAPCTTPGALNTTNITESGATI
                     SWGSVAGAASYAVEYKASSSTSWITLLSATTATNATLTGLSASTMYDWRVRSNCSINA
                     SNFAVASFTTASPPTCVDNYESNNTSKQSRSVGWSSKINATIDKTTDEDWFKLSTGNS
                     NSTNIRVTVNELPADYDMFLYDKNLRLIGSSTNNGTTAEALVFNSTTSRATYFVKVVG
                     KSGNANAASCYAFLAESSVTPFAPVSGVAYFSDIQEVETTVFPNPVSTKVNLRFMSEA
                     AGNATLQLVNASGVTVRSNGIPVLKGANQTSINVSDIKPGLYLIKVKNNLLNITKQVI
                     VVH"
BASE COUNT         1180 a         1078 c         1230 g         1259 t
ORIGIN      
        1 ttgctgtatg agttgtggga gtcgagcctg cattgcacct accacgtgat caacaaggga
       61 gcggaggaga tgttgttttc cgtgggcgga cacccggctt ttgcactgcc attagaggac
      121 gggctgaagt acgaagatta ccatcttgag tttgaacagg atgagccttt gatgcgctac
      181 aaattgcagg atggtcttat ttccgaaaga accgagttgc tgccatccaa tggtggcagg
      241 ctggtgttgc atccctcgtt gttttatgaa tatgccattg taatgaagca tctcaaaagt
      301 gagaaggtta cgctgaaggc tgatcaagga aagcatgggt tacatttcca ttatgccggg
      361 ttcccttatc tcggcatctg ggcggcaaaa gatgcaccat ttatatgcat tgaaccctgg
      421 tgcggccatg ccgacaatgt ggggcacgat caacaactgg aaaccaaaga aggcattgaa
      481 aaactggcac ccggagccag ctggcaacgg acctggatgg tagattgttt ttgatcagta
      541 aaagtcgaga accgcattat tgccatacac gctgtgcggc tgaatggata ctcctatttt
      601 ctgaaagcca cccaagcaaa tccttctgtg tcccagcgat ggaatgcctt catctataag
      661 aaggcttacc aggaaatcca gcgggttgcc atatccataa tgacaacatt ctcccatgaa
      721 gtattctttt ttgcggcact cttctgttat cctgtcgtga ccatcatatc cttgcaggcc
      781 cgaactaacg gcgtggcatt ttgcactgac ccagcaaagc gaatcaggca gaaggagtgg
      841 ctggggcttc atttccttca aatgctttag taagctttgg tagtaggtac tctgctcgtt
      901 cacaggctgt ttgggcagca cggtttgcgc aaacaatgcc ggatccatcc gcaccaggtt
      961 gaggaggtaa atcagttcct tttcctggga agacaggtag ctcaggtttt tggcagtatt
     1021 cgcagcggta tatttaggag cattccaggc acttgaaaat tttgcaaggg gagaggaaac
     1081 gggaggacgt ccatacgtgg tggcgcaaat cagaatgcat gctacgataa gggtttgacg
     1141 ccgttgcatg tgaaaggggt ttgcacttat acgattttgc accagcgtgt attgtgccgg
     1201 ctcaatgatt aacggaatct tccgaaaaaa aaagggccag atgaagaatc atccggccgt
     1261 tcattgtgat tggatctata gttacaccat tattggctta gtgtacaact atcacttgtt
     1321 tagtgatgtt gaggaggttg ttcttgacct taatcagata caatccaggt tttatatcgc
     1381 taacattgat ggacgtttgg ttggcccctt tcagcacagg tatgccattc gatcttacag
     1441 ttacaccgga ggcattcacc agctgcaggg tggcattgcc ggcagcttcg ctcataaagc
     1501 gcaggttcac cttggtgctt acggggttgg ggaatactgt ggtctccacc tcttgtatgt
     1561 cggagaagta ggccacaccc gatactggtg caaacggcgt tacactgctt tcggcaagga
     1621 aggcgtagca tgaagctgcg ttggcgttgc cggatttgcc caccaccttc acaaagtagg
     1681 tggcccgtga ggtggtgctg ttgaacacca gtgcttcggc agttgtgcca ttgttggtcg
     1741 agctgccgat cagacgcagg ttcttgtcat acaggaacat gtcgtagtct gcgggcaatt
     1801 catttacagt taccctgatg ttggtggagt ttgaattgcc tgtgctcagc ttgaaccaat
     1861 cctcatcggt agtcttgtcg atggtggcat tgatcttgct gctccaaccc actgatctcg
     1921 actgtttgga tgtgttgttt gactcgtagt tgtcaacaca tgttggaggt gatgctgtgg
     1981 tgaaagatgc aaccgcaaag ttgctagcat taatgctaca gttggatctc actctccagt
     2041 catacatagt agaggcgcta agaccagtga gggttgcatt cgtggctgtg gttgcagata
     2101 acagagtgat ccacgaagtg cttgaactgg ctttgtactc tacagcatag ctggcagcac
     2161 cagctaccga tccccaggaa atggtagcac cactttcagt gatgttagtt gtattcaatg
     2221 cccccggcgt tgtacaaggt gcgatcagtt gaaactgact ggtagcatac gctgatgcag
     2281 cagtgccgca aacagcagct actctccaat cgtaggtagc accggcattg agtccattta
     2341 aagacagggt ggtagaatta taagtttgag agaagttggt ccaggtagtg gaggttgaaa
     2401 gtttgtaatc gatgctgtat gctgtggcac catttacagc cgtccagctc aaggtagctg
     2461 cagtttctgt aagaccagat acggataagc ctgatggcgt accgcaattt atgatggtgg
     2521 cagcagtggt aaattgtgcc gctgcaacat cggaggcgga ggtactgcaa ttggttgtta
     2581 cacgccaatc gtacaaggtg gaagctgtca gaccagacaa tataacagag gtattggtgg
     2641 tattggctgc ggctacttgc catgtagttg agctgcctgc cttgaattct actttataac
     2701 cagaggctcc gcttacggct gcccatgaaa tcctggcaga tgtatcaaca acttcagcac
     2761 tgctgaggtt ggtaggtgct gaacaggttg gaatgctgat ggcgcttcct tcaagagcac
     2821 gttcccaaac accacgtcca taggtgccaa tccttaccag ccctgcacct gcatggatgt
     2881 caatatcgtt gatggcaaca gtgggaagat tgccggtgat atttgtccag gttgtgctgt
     2941 ttggcgccag gtagtacatg cctacgttca agcctacata taccgattca tccgcagcta
     3001 ctgctactgc ccttgagatg agagcaggaa ggtttcctga tatgttggtg aatgtggctc
     3061 cgccatccgt agatgcaaat accctgttgg aggtactgtt gcacaccacc caaagtttgc
     3121 gaggattgat agggcttact gctatggcgt taatggtaga tggcaatgta gtagatgacc
     3181 aggtggctcc gccattagtg ctgtagtaaa acgcagtgga ctttgaggca taaatggtgt
     3241 tagtgtcaga tggcgctaca gccaaagctg caatggtggt tgaaatactt gtgcctgaaa
     3301 tattcgtcca ggtattacca ttgtcatagc tcttgaatac acctgtccaa ccgccatata
     3361 tagctctatt ggcttcatgg tataccaagg gtgtcaccca gtcgccattg gaaggcttgg
     3421 taagcgtagt atacgaagtg ccgccgttgt tgcttctgta catctgtcca tactgcgagg
     3481 tgccgaaaat gatgttctca tcaaaaggac tgatgatgcc atccatacca tcggcgccca
     3541 accagtcgta ccaggtgcca tttttgaaca agcttgaacc attatcctgt gcacctccgg
     3601 tgaacagttg gctgttggtt tttgaattgg caatacgata gaactgtcga ataccaaggc
     3661 ctttggaaag gtctctccag ttgtcaccgc ggtctgtact aatatagatt ccaccatcgg
     3721 agccagaata cacggagttc ctcacccatt ccaaagcgtg aatatcagca tggttgtatc
     3781 ctatagaatt aggatacgac catgctgttt gagcggcaaa ggtcttaccg ccatcggtag
     3841 atctgaatac gatgattcca ccgatatata tttcattggc attgttggga ttcacacaca
     3901 tagccatgtc ataacctgcc tgtccgccag taccacatcc ggttgtttca taaccgaaaa
     3961 agttggtaca gccagcggca gagcctgtaa ctgacacggt gaaagaggca ccagagttgg
     4021 tagaaacata gagccttccg aattcattgc caaaggcctg aactacatat accctgtttg
     4081 gatcggcagg cgaaacgctt accagggcac gagcagcatt ggtaatgcct tcagttgcag
     4141 taaggccaac ccatgtgagg ccaccatcaa tggaacgaat aactgaaggg ttgaaaggac
     4201 ctgttgcata catggtgttg ggatcgccag gtttgaattc gatatcttct atactgttgg
     4261 cataagtttt agtccagctc acaccgccgt cagtagaacg aaagatcccg ttttgtgcag
     4321 cggtgaaaat gatattgctg ttcgtaggat gtatgagtat tttacttaca gtgccggaca
     4381 taaggcgacc aaccgatgtc caggtatttc ccttgtcaac tgacttgatt acctgtgcag
     4441 cattgctacc tgcataaact acgtttacgt tttgcgggtc tactgcaacg gagaacatgt
     4501 tcatccatga tccattggca tctgtaagtg gcgtccagct attaccacca gtggtagatc
     4561 tccatacacc accaccggga gaagtaacat agataagagt ggtatcgagg ggatgcacag
     4621 caacgctggt caaacgaccc acgcctgggt tccagccaga agtgcggttc cagttggtgg
     4681 gtcctttttc aacccaggaa gtagttcctg aaagtaaatt ctggccactt ccttttccac
     4741 caccatc
//
LOCUS       DATIQF010000493         1957 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_68860, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000493 DATIQF010000000
VERSION     DATIQF010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68860"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..720
                     /locus_tag="VLL95_08165"
     CDS             <1..720
                     /locus_tag="VLL95_08165"
                     /inference="COORDINATES: protein motif:HMM:NF012907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 18 protein"
                     /protein_id="HSR38874.1"
                     /translation="ESHTDGIDLDWEYPTIPGPPGHPYSPEDKANFTDLLVQLRNVLG
                     KKYELSFAAGGFQQFLDEAVDWDAVVPLVDRINLMTCDLINGYSTVTGHHTALYSRPE
                     QKESTDNCVQTLLRKKVPADKLVIGGAFYCRMWENVSPQNNGLYQSGKHVQGVPYKNF
                     NNHLTEAQGFKAYWDDTVKAMHYYNAAEKRFATMDDPRSLQAKVQYMKEQQLGGIMFW
                     QLFDDAFQKGLLDVISDAVHK"
     gene            734..1597
                     /locus_tag="VLL95_08170"
     CDS             734..1597
                     /locus_tag="VLL95_08170"
                     /inference="COORDINATES: protein motif:HMM:NF012951.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase family protein"
                     /protein_id="HSR38875.1"
                     /translation="MVRSRIAPTPSGYLHIGNLCSFVRTWLAVRQKQGKLLLRIDDID
                     NERYRPEYLADIFDWLALLGLNYDEGPLSVADFEQRWSQQKRMAQYEAMLQRLADSGA
                     VYACNCSRKKIAELSEDGRYHGECRHKKLPLDLPGTVWRVHIPGQATVAWHDEILGRQ
                     QHPPAALMGDFVVRRKNGCPAYQVASLSDDLHFGINYIVRGADLLASTAAQLYLAQLL
                     GENAFLQTSFAHHPLITDQHGAKLSKSAGSGALLQSHHQKDAAATWRLLQSCCDVVPG
                     NRIIHTAADLL"
     gene            complement(1679..>1957)
                     /locus_tag="VLL95_08175"
     CDS             complement(1679..>1957)
                     /locus_tag="VLL95_08175"
                     /inference="COORDINATES: protein motif:HMM:NF024957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HSR38876.1"
                     /translation="PQVGLNVGAKLVAKEENEEENLNIGNSETDDLKPFDFGWKFLAG
                     VELKNNLFFSVNYSLGLANLNPASDLTAKSNYFGVSLGYFFGGAKKAK"
BASE COUNT          505 a          496 c          494 g          462 t
ORIGIN      
        1 gaatctcata cagatggcat tgatctcgat tgggaatatc caaccattcc cggtcctccg
       61 ggtcatcctt acagccccga agacaaagcc aacttcaccg acctcctcgt gcaattgcga
      121 aatgtactgg gcaaaaaata cgagctgagt tttgcggcag gcggtttcca acaattcctg
      181 gacgaagcgg tggactggga tgcggtggtg ccgctcgtcg atcgcatcaa cctgatgact
      241 tgcgacctca tcaatggcta cagcacagta accggccatc atacagcgtt gtacagccgt
      301 cctgaacaga aggaatcgac cgacaattgc gtgcaaaccc tgcttcgcaa aaaagtgccc
      361 gccgataaat tggtgatagg cggtgcgttt tactgccgca tgtgggaaaa tgtgagcccg
      421 caaaacaatg gcctgtatca aagcggaaaa catgtgcagg gcgttcccta caaaaacttc
      481 aataatcacc tcactgaagc acaaggcttc aaagcctatt gggacgatac cgtcaaggcc
      541 atgcattatt acaatgccgc agaaaaaaga tttgccacga tggatgatcc aagatcattg
      601 caggccaaag tgcagtacat gaaggagcaa cagctgggag gcattatgtt ttggcagctg
      661 ttcgacgatg cctttcaaaa aggattgttg gacgtaatca gtgacgccgt tcataaatag
      721 taattgaatt cgtatggtgc gcagtcgcat tgctcccact cccagcggtt acctgcacat
      781 cggcaacctg tgctcgttcg tacgtacctg gctggctgtt cggcaaaagc aggggaagtt
      841 gttattgcgc atcgatgata ttgacaacga acgctacagg ccggaatacc tcgcagacat
      901 ttttgattgg cttgctttgt tgggcctgaa ttatgatgaa ggccctttgt cggttgctga
      961 ttttgagcag cgctggtcgc aacaaaaacg catggcgcaa tatgaagcca tgctgcaacg
     1021 tctggccgac agtggcgctg tatatgcctg caactgcagc cgcaaaaaaa tcgcggaact
     1081 gagcgaagat ggaaggtatc atggcgagtg ccgccacaaa aaactcccac tcgacctgcc
     1141 cggaaccgta tggcgtgtgc atattcctgg acaggcaacc gttgcctggc acgatgaaat
     1201 attaggtagg cagcaacacc ctccggccgc actgatgggc gacttcgtgg tgcgccgtaa
     1261 aaacgggtgt cccgcatacc aggttgcttc gttaagcgac gacctgcatt ttggcatcaa
     1321 ctatattgtg cgtggcgccg acctgttggc ctccacggca gcgcagcttt accttgccca
     1381 gttgctggga gaaaacgctt ttctgcaaac cagctttgcc caccacccgc tcattacaga
     1441 tcagcatggt gccaagcttt ccaaatcggc aggcagcggc gccttgctgc aaagccacca
     1501 tcaaaaagat gcggctgcca cctggcggct gctgcagagc tgttgtgatg tggtgcccgg
     1561 caatcgtatt attcatactg ctgccgattt gctatgaaat aaatgcaaaa aaaaggctgg
     1621 agcgtattaa gctccagccc atttctttaa tacagtcaga tgactttttt gaggaagatt
     1681 atttggcctt tttggcacca ccaaaaaagt aaccaagact cacgccaaaa taattggatt
     1741 tagcggtgag gtcactggca ggattcaggt tggccagacc caatgaataa ttgacgctga
     1801 agaacaggtt gtttttcaac tcaaccccgg cgaggaattt ccagccaaaa tcaaagggct
     1861 tgaggtcatc ggtttcacta ttgccgatgt tcaggttttc ctcttcattt tcttctttgg
     1921 ctaccagttt ggcgcctaca ttaaggccta cctgggg
//
LOCUS       DATIQF010000494         2773 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_206030,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000494 DATIQF010000000
VERSION     DATIQF010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2773
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206030"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1470)
                     /locus_tag="VLL95_08180"
     CDS             complement(<1..1470)
                     /locus_tag="VLL95_08180"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HSR38877.1"
                     /translation="MKDKKAILRSKLEEGKMGGGAARIAAQHKKGKLTARERIDLLMD
                     PGSFEEVGALVIHRTKEFGMEEQQFYGDGVITGFGTVNGRLTYVFAQDFTVFGGSLSE
                     THAEKICKIMDMAMKVGAPMVGLNDSGGARIQEGVRSLGGYADIFFRNVQSSGVIPQI
                     SAIMGPCAGGAVYSPAMTDFTIMVENTSYMFVTGPNVVKTVTNEEVSSEELGGASTHS
                     TKSGVTHLTAVNDKDCIEQVKKLLSYMPQNCEDVLPKLPYTLGDEIREELESIVPESA
                     NQPYDIRAVIDGICDKESFFEVHEYYADNIVVGFARLAGRSIGIVANQPMSLAGVLDI
                     DSSKKGARFTRFCDCFNIPLLVLVDVPGFLPGTDQEWNGIITNGAKLLYALSEATVPR
                     CTVITRKAYGGAYDVMNSKHIGADINYAWPSAEIAVMGAKGASEIIFKKEISEAADPA
                     QKLLEKEAEYADLFANPYQAAERGFIDEVIEPRETRRKLI"
     gene            complement(1509..>2773)
                     /locus_tag="VLL95_08185"
     CDS             complement(1509..>2773)
                     /locus_tag="VLL95_08185"
                     /inference="COORDINATES: protein motif:HMM:NF014805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HSR38878.1"
                     /translation="LEVDGIHPGYGFLSENADFAQKVTDAGIEFIGPTPEAMRIMGSK
                     LAAKDSVKKYNIPMVPGIDKAVTDLNVAIEVANKIGYPVLIKASAGGGGKGMRIVERA
                     EDMKEQMERAISEATSSFGDGSVFIEKYVTSPRHIEVQVVADKYGNVIHGLERECSIQ
                     RRHQKVVEETPSAIVTPEMRHAIGEAAVMVAKSCNYVSTGTVEFLVDDKLNFYFLEMN
                     TRLQVEHPVSEMILGLDLVEQQIRIARGEKLAITQDDIRPNGHAIELRVYAEDPLNNF
                     MPSIGTLTKYQRPHGEGIRVDDGYEEGMSIPIYYDPMIAKLVVHGKTRTEAIAKMLEA
                     IKEYKIEGVATTLPFGTFVFEHDAFFSGHFDTHFVKNYYTPELIRDKQKANGELAAIL
                     AARYWMEEQEALRPVENKSTSWKRRLAH"
BASE COUNT          608 a          728 c          666 g          771 t
ORIGIN      
        1 gatgagtttg cgccgggttt ccctgggctc aatcacttca tcaataaagc ctctttccgc
       61 tgcctggtaa gggttggcaa acaagtcggc atattccgct tctttttcca gcaatttttg
      121 tgcagggtct gctgcctcag aaatttcttt tttgaaaatg atttcggaag cgcctttggc
      181 acccattact gcaatttcgg ccgaaggcca ggcatagttg atatcagcgc caatgtgttt
      241 gctgttcatc acatcatagg cgccgccgta ggccttgcgg gtgatgacgg tacagcgtgg
      301 taccgtggct tcactcaaag catagagcaa cttggcaccg ttggtaatga tgccattcca
      361 ttcctggtcg gtgccgggca aaaagccggg gacatccacc agtactaata gcggaatatt
      421 gaaacaatca cagaagcggg tgaagcgggc accttttttt gaactgtcaa tatcgagtac
      481 acctgccagg ctcatgggtt ggttggctac aatgccaatg cttcttccgg ccagcctggc
      541 aaagcccacc acgatgttgt cggcatagta ttcgtgtact tcgaagaaac tttctttgtc
      601 gcagatgcca tcaattacgg cgcgaatgtc ataaggctgg ttggcgcttt cgggaacaat
      661 ggattccagt tcttctctta tttcatcacc cagggtataa ggcaactttg gcaatacgtc
      721 ctcgcagttt tgcggcatgt agctcagcag tttcttcacc tgttctatgc aatccttgtc
      781 gttcactgcc gtcaggtgtg taacacccga tttggtggag tgcgttgaag cgccacccag
      841 ttcttcgctg ctcacttctt cgttggtcac tgtcttcact acgttgggcc ctgttacaaa
      901 catgtagctg gtgttctcca ccatgatggt gaaatcagtc atggcaggag aatacactgc
      961 accaccggcg catgggccca tgatggcact gatctgcgga ataacgcccg aagactgcac
     1021 attgcgaaag aaaatatcgg cataaccgcc gagcgaacga acgccttcct gaatgcgggc
     1081 accacctgag tcgttcaatc caaccatggg agcgcccact ttcatggcca tgtccatgat
     1141 cttgcaaatc ttttcagcat gcgtttcgga gagagagcca ccgaatacgg taaagtcctg
     1201 cgcaaacaca taagtaagcc tgccattcac ggtgccaaat cctgtgatca cgccatcacc
     1261 ataaaactgc tgctcttcca ttccaaactc tttggtgcgg tgaatgacca atgcacccac
     1321 ctcttcaaac gaacccggat ccatcaacag gtcaattctt tcccgtgcag tgagttttcc
     1381 ttttttatgt tgggcggcaa tgcgtgctgc acctcctccc attttgcctt cttccagttt
     1441 gctgcggagt attgctttct tgtctttcat gacttagttc ttttgtacgt gatgcgaaac
     1501 ggctttgatc aatgggccag cctgcgtttc caactggttg atttgttctc aacaggacgc
     1561 aatgcttcct gttcttccat ccaatagcgg gcagcgagta tggcagccaa ttcaccattg
     1621 gctttttgct tgtcgcgtat cagttccggc gtgtaatagt tctttacaaa atgggtatcg
     1681 aagtggccgg aaaagaatgc gtcgtgctca aacacgaagg tgccaaaagg cagggtagtg
     1741 gctacgcctt caattttgta ttcctttatg gcttccagca ttttggcaat ggcttcggta
     1801 cgggtttttc catgcactac cagtttggca atcatggggt cgtagtaaat ggggatgctc
     1861 ataccttctt cataaccatc gtccacacga atgccttcgc cgtgcggcct ttggtatttg
     1921 gtaagggtgc cgatagaagg catgaagttg ttcagcgggt cttcagcgta caccctcagc
     1981 tcaatagcat ggccattggg acgaatgtcg tcctgcgtaa tggcgagctt ttcacccctg
     2041 gcaatccgga tttgctgctc cacaagatcg agccccagta tcatttcact tacggggtgc
     2101 tctacctgca gcctggtatt catttccagg aagtagaagt tcagtttgtc atccaccaaa
     2161 aattcaacgg tgcctgtact tacgtagtta caggatttgg ctaccatgac agcggcttct
     2221 ccgatggcat gtcgcatttc aggcgtcact atggccgaag gagtttcttc cactactttt
     2281 tggtggcgcc tttgtatgct gcactctctt tcaaggccat ggatcacatt gccgtattta
     2341 tcggccacca cctgtacctc aatgtgccgg ggagaggtaa cgtatttttc aatgaataca
     2401 gagccatcgc caaacgaaga agtggcttcg ctaatggccc gttccatttg ttccttcatg
     2461 tcctcggccc gctccacaat gcgcatgcct ttgccaccgc cacctgctga ggctttgatg
     2521 agtaccgggt agccgatctt attggctact tcaatggcaa cattcaaatc ggttacggct
     2581 ttgtcgatac ccggcaccat gggaatgttg tatttcttta cgctgtcttt ggctgccagc
     2641 ttggagccca tgatgcgcat ggcttcaggg gtaggaccaa tgaattcaat acctgcatcg
     2701 gtaaccttct gggcaaaatc tgcattctcg ctcaggaaac cgtaacccgg gtggatgcca
     2761 tccacctcca gct
//
LOCUS       DATIQF010000495         1870 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_221016,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000495 DATIQF010000000
VERSION     DATIQF010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221016"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1506)
                     /locus_tag="VLL95_08190"
     CDS             complement(<1..1506)
                     /locus_tag="VLL95_08190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38879.1"
                     /translation="MFGLNKLYLLMEKQHNRGQDGAGFASVKLNAEPGYPFMHRMRSI
                     ANQPIADIFAQVGAQVAELEKYQPDMLKHPGLAKGHLPFLGELMLGHLRYGTQGKNDV
                     AFCHPFIKKDIKPARNLALAGNFNLVNTEELFDLVNIDPGEFQKQSDLAAMMEVVHHF
                     LVKEDEKDHENPDIKTVLQKACSLFDGGYHIGGLVGNGHSFVMRDANGIRPSYYYIHD
                     DYIVAASERAAIRTTFNVGENEVLELMPGNAIIIDDKGNYSIEQILEPKERRACSFER
                     IYFSRGNDEKIYRERITLGHKLSRPVLDAIDHDLKNTIFSYIPNTAEVAYFGMVKGME
                     EYLNQIKVQRIMSWGKDFDEEKLTEMITRKIRQEKITIKDVKMRTFITEDVSRQDMVQ
                     HVYDITYGTVRPGQDTLVVIDDSIVRGTTLRESIIRMLGRLKPKKIIVVSSAPQIRYP
                     DCYGIDMSKMGDFIAFQAAIELLKERDQRDMLTELYKECKELQRTNMLHTKN"
BASE COUNT          380 a          480 c          508 g          502 t
ORIGIN      
        1 gttcttggtg tgcagcatat tggtacgctg cagttccttg cactctttgt aaagttcggt
       61 gagcatgtcc cgctgatcac gttccttcaa cagttcaata gcggcctgga aggcaatgaa
      121 atctcccatc ttgctcatgt cgatgccgta gcagtcgggg tagcggatct gtggggctga
      181 agaaacgacg atgatctttt tgggtttcag cctgcccagc atgcggatga tgctttcacg
      241 cagggtggtg ccccgcacaa tgctgtcatc aattaccacc agtgtatcct ggccggggcg
      301 caccgtgcca taggtaatgt cgtacacgtg ctgcaccatg tcctgccggc tcacatcttc
      361 tgtaatgaag gtgcgcatct tcacatcctt gatggtgatc ttttcctggc ggatcttgcg
      421 ggtgatcatc tccgtcagtt tctcttcatc aaagtctttg ccccagctca tgatgcgttg
      481 caccttgatc tggttcaggt attcttccat gcccttcacc atgccgaagt aggctacctc
      541 ggccgtgttg ggtatgtagg agaagatggt attcttgagg tcgtggtcaa tggcgtcgag
      601 caccggccgg ctcagtttgt gcccgagggt gatgcgttcg cggtagatct tttcgtcgtt
      661 gccgcggctg aaataaatgc gttcgaagct gcaggccctg cgttctttgg gctccagtat
      721 ctgttcgatg ctgtagttgc ctttgtcgtc gatgatgatg gcattgcctg gcatcagttc
      781 gagcacttcg ttttcgccca cgttgaaggt ggtgcggatg gcggctcttt cactggcggc
      841 tacaatgtag tcatcatgaa tgtagtagta gctcggacga atgccattcg catcccgcat
      901 cacaaagctg tgtccgttgc caacgaggcc accaatgtga tagccgccgt cgaacaaaga
      961 gcaggctttt tgcagtaccg tttttatgtc ggggttctcg tgatcttttt cgtcttcttt
     1021 taccaggaag tggtgcacca cttccatcat ggctgccagg tcgctctgtt tttgaaattc
     1081 acccgggtca atgttcacca ggtcaaacag ttcttccgtg ttcaccaggt tgaagttgcc
     1141 cgccagggcc aggttgcgtg ccggcttgat gtctttctta atgaagggat ggcaaaaggc
     1201 cacatcgttt ttaccctgcg tgccatagcg caggtggccc agcatcagtt cacccaaaaa
     1261 gggcaggtga cctttggcca agcccgggtg tttgagcatg tcgggctggt acttttccaa
     1321 ctcggctacc tgggcgccca cctgggcaaa tatgtcggca atgggctggt tggcaatgct
     1381 gcgcatgcgg tgcatgaagg gatagccggg ttcggcattc agctttaccg aggcaaagcc
     1441 ggctccatct tggccgcggt tgtgctgctt ttccatgagc aggtacagtt tgttgaggcc
     1501 gaacatgact gtaccatatt tctggtaaaa atgggaaaat ggcttccgta aacgaatgaa
     1561 ggccaggccg cattcgtgtt tgatagcatc actcatggct aaaaagaaag aggcgcaaag
     1621 gtaaccaatg gcacccgctt ttcctcttta attaaattat caatgaagac aggattaatt
     1681 gagcaccact gccgattcgt ccaccggtca cacggattct gccagccaca aaaactcttt
     1741 cacaaacagg tcgatctgct tgcggaacgc ttcgtcgagc aggttgcctt cggcatcgaa
     1801 tttcttgtct acaccgggtg ttaccagcat gtacggcgag aggatgccaa acagggcgcc
     1861 caccagcagc
//
LOCUS       DATIQF010000496         2335 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_297111,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000496 DATIQF010000000
VERSION     DATIQF010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2335)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2335)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2335
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297111"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(53..1282)
                     /locus_tag="VLL95_08195"
     CDS             complement(53..1282)
                     /locus_tag="VLL95_08195"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR38880.1"
                     /translation="MFTGPLLNQYPLLRTFLSARFLFIFAMQMVNTGIAWFLYELTND
                     VLSQGWLGLSEVIPAISLALYAGHVIDKSNKRNMLLRGMLLYLCASIGLAVVTSQWVT
                     ATSSVRLVEMCIYLLIFFTGVFRAFTGPTFHSIIAQLVDKNDLPKAVTLSSTAWQLAA
                     VLGPVIAGFIIAQASISVMFILAILLLCVASFLTSRLPHLPVQHSNLQQRTWESVKDG
                     LRYVWRTKEVLSALSIDMFAVLFGGAVAMLPVFAKDILHVDATGMGFLKSAQGIGTVL
                     VLFIMARKPLRSQQGKLLHYCVAGFGFCMIAFALSTHFWISFFVLLLSGVFDGISVVI
                     RSTVLQLFVPDGMRGRVSSVNSMFINSSNELGQFESGVMAKLMGTVPSVIFGGCMTLV
                     VVAISWINAPKLRKLEY"
     gene            1409..>2335
                     /locus_tag="VLL95_08200"
     CDS             1409..>2335
                     /locus_tag="VLL95_08200"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HSR38881.1"
                     /translation="MIETQFAPVPWCHHTNLYEVNIRQYTPEGTFKAFESHLPRLSLM
                     GVETLWFMPITPIGEIKRLGTLGSYYACSSYVKTNPEFGSIDDFKDLVQAAHALGMKV
                     IIDWVANHTGYGHEWMEGLRRDYYALDPSGNFSERNGWEDVADLDYGNNDMRKAMIDA
                     MKFWVETCNIDGFRCDMAHLVPLDFWKQARVACDKLKPLFWLAETEHLEYHEVFDASY
                     AWEWMHETEKFFQNGWTNTVLDKVLYRYEDNYPAASFKLFFTSNHDENSWNGSEFEKY
                     GLGALPLFVLGATWNGLPLIYSGQEIPNFKRLQ"
BASE COUNT          641 a          576 c          595 g          523 t
ORIGIN      
        1 atcgagagga aaggggcgaa aggtgaaaaa atccttcgtc ccttttctat tgctagtatt
       61 ccagcttgcg cagtttgggg gcattgatcc aactgatggc cactaccacc agtgtcatgc
      121 atccgccaaa aattacggag ggaacggtgc ccatcaattt ggccatgacg ccgctttcaa
      181 attgtcccag ttcgttgctg ctgttgatga acatggaatt gacagaagat accctgcccc
      241 gcatgccatc gggaacaaac aactgcaaca ccgtactgcg aatgactacg ctgatgccat
      301 cgaaaacacc gctgagcagc aatacgaaaa acgatatcca gaagtgagtg gacagcgcaa
      361 aggcgatcat gcaaaagccg aagcctgcca cacaataatg caacagcttc ccctgctgtg
      421 aacgcaatgg ttttcgagcc attataaaca agaccaatac agtgccaatc ccttgcgccg
      481 atttcagaaa acccatgccg gtggcgtcca catgcaatat gtctttggca aataccggca
      541 gcatggcaac ggcgcctcca aacaatacag caaacatgtc gatgctcagc gccgacaaca
      601 cttctttggt gcgccacaca taacgcaatc cgtcttttac actctcccag gtacgctgct
      661 gcaggttgct gtgctgcacc ggcaaatgag gcaagcgact ggtgagaaaa ctggcgacac
      721 acagcagcag aatggccagt atgaacatca cgctgatgct ggcctgcgct atgatgaagc
      781 ccgcgatcac aggccccagt actgcggcca gctgccaggc tgtactgctg agggtgactg
      841 ctttgggcag gtcgtttttg tcaaccagtt gcgcaatgat ggaatgaaag gtggggccgg
      901 taaatgcccg gaacacaccg gtgaaaaaaa tgagcaggta gatgcacatt tccaccaacc
      961 gcacactact ggttgctgtt acccattggc tggtgaccac tgccaaacca atactggcac
     1021 acaggtacag cagcatgccc cgaagcagca tgttacgctt gttgcttttg tcaatcacat
     1081 gcccggcata caatgccagg ctgatggcag ggatcacttc gctcaatccc agccatcctt
     1141 gcgaaagcac atcattggtc agttcataca ggaaccaggc aatgcctgta ttcaccattt
     1201 gcatggcgaa tatgaacagg aatcgggccg acaaaaaggt gcggagcagc gggtattgat
     1261 tcaataatgg tccggtgaac ataggcgtcg caaaactaag gcgacagcag gcatttatct
     1321 gggaaaagcg aacctatgga ttttgacgca gtggcggtgg aatatttgac aggttttggt
     1381 tgcccaaatt gaagtttctt tggccattat gatcgagaca cagtttgcac cagttccctg
     1441 gtgtcatcat accaacctgt atgaagtaaa catacggcag tacacacccg aaggaacctt
     1501 caaggctttt gaatcgcacc tgccacggct ttcattaatg ggagtcgaga ctttatggtt
     1561 catgcccatc acgcccattg gcgaaatcaa gcgattgggg acattgggca gttattacgc
     1621 ctgcagcagt tatgtaaaaa ccaacccgga gtttggcagc attgatgatt tcaaagacct
     1681 ggtgcaggca gcccatgcac tggggatgaa agtgatcatc gactgggtgg ccaaccacac
     1741 cggctatggt catgaatgga tggaaggcct gcgccgcgat tattacgctt tggaccccag
     1801 tggcaatttt tcagagagaa atggatggga ggacgttgcc gatctcgatt acggaaacaa
     1861 cgacatgcgc aaggccatga ttgacgccat gaagttttgg gtagaaacct gcaacattga
     1921 tggatttcgt tgcgacatgg cgcatctcgt tccacttgat ttttggaaac aggcaagagt
     1981 agcctgcgac aaactgaagc ctctattctg gctggcagaa accgagcacc tggaatatca
     2041 tgaagtattc gacgccagct atgcctggga gtggatgcat gaaacagaaa agttttttca
     2101 gaatggatgg accaatacag ttttggacaa agtgttgtac cggtacgagg acaattatcc
     2161 agctgcctca ttcaaacttt tcttcacctc caaccacgat gagaattcat ggaatggaag
     2221 cgagtttgaa aaatatggat tgggtgcact gccattgttt gtactgggcg ccacctggaa
     2281 tggattgcca ttgatctaca gcgggcagga gatcccgaac ttcaagcgat tgcag
//
LOCUS       DATIQF010000497         6223 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_114739,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000497 DATIQF010000000
VERSION     DATIQF010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6223
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114739"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            48..1169
                     /locus_tag="VLL95_08205"
     CDS             48..1169
                     /locus_tag="VLL95_08205"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: protein motif:HMM:NF004679.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HSR38882.1"
                     /translation="MKKVGILGGGQLGRMLLQEAANYPVETFVLENDPGCPAAHLCHH
                     FHLGSIKDYDTVLEFGKQVDVITIEIEAVNVDALEALEAMGKTVIPSQAVLRTIKNKI
                     LQKQFYFDNNISTPAFVVTQTREELKAHASFLPAVHKLGEGGYDGRGVQIIDTEDQMA
                     AGFDAPSVLEKKVDIAMEIAILVAVSQHGQTALFPPVEMVFDPYLNLLDYQLSPASIS
                     KETLWKAEAFAINLVRAFNSAGLFAVEMLIDKQGEVWVNETAPRVHNSGHHTIEAHYT
                     SQYDMLWRIMLDYPLGNTEALAPSALINLIGEPGYQGSPVYENLEEMLKMPGVYPHIY
                     GKAETKPGRKMGHVTVMGTDRIDLIRKAKTIRDQLKVKA"
     gene            1282..2340
                     /locus_tag="VLL95_08210"
     CDS             1282..2340
                     /locus_tag="VLL95_08210"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSR38883.1"
                     /translation="MKLRPIAFASFLLLTLFACKSEEKKETPGGGGGERRPGGPPPVF
                     DAVLATSFQVDRKIEAPGTVLPAENTDLHPEASGRVVAINFKEGSMVSAGTLLVKLFD
                     GDLQAQLRKLDVQLKVAEATEKRQKELLAINGTSQQDYDIASLNVSNIKADMELVKVN
                     IAKTELRAPFTGRLGLRNISLGAYVTPQTIVTNIAQTNNLKVEFAVPEQYAFEMVPGK
                     AVSIRTTATRRNYNATILAAQNTIAQQTRNLSVRALVSNSDAMLTPGSFVQVGIQVGG
                     AKEAIMIPTQAVVPSTRFKNVIVSENGKAAFKVVTTGYRDSARVEITSGLSVGDTIIT
                     NGLLTIKEGMPVKTRFKK"
     gene            2374..5505
                     /locus_tag="VLL95_08215"
     CDS             2374..5505
                     /locus_tag="VLL95_08215"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSR38884.1"
                     /translation="MNISEISLRRPALAIVINLLILLFGLLGFTFLGIRDYPVIEPST
                     VNVRTSYQGANADIIENQITEPLEKSINSVPGIRNITSSSSQGSSSITVEFNLGVPLE
                     EAANDVRDKVSQAQRSLPSDLEQPPVVSKSDGFGESILSMAVSSDSRNQLEITEFANN
                     VLVDRLQTIPGVSGIQIWGEKKYAMRIWMNPQRMRSRGVTANQISQALQRENVELPSG
                     KISGESTELTVRTLGRLNTEEEFENVIIRSDVNGIIRLKDVAEVVLGPESEESAFKES
                     GVPSIGMAIVPQPGSNYIQIADDFAKRFEQIKKDLPADIKTKMLMDVTKPIRKSLDEV
                     KETLVISIGLVVLIIFLFFRSVNMAFRPLIDIPVSLIGAFFIMYVAGFTINVLTLLAI
                     VLATGLVVDDGIVVTENIYKKMERGMNKWAAAKEGSKEIYFAVISTSITLAVVFLPII
                     FLQGFVGKLFREFGIVVAGAVLISALVSLTLTPVLNVKLTPKSGPKHGRFYHATEPFF
                     RGMENGYRKLLLSFMKVRWIAFVIIAICAMAIYWFGTNLQSELAPMEDRSMFRLSVTA
                     PEGTSYDAMEKAMDKIQNFILDSVPENRGVMAFTAPGFTGGGSVNTGFIRVMLVDPPE
                     RSRTQGDIVNYVQKKLSKFPEVRAFALQEQTISQSRRGGQPVQFVIQNNNFDKLKEML
                     PKFMDAARQSPVLVGVDTDLKFNKPELRIEVDRLKASELGVSLASVSETLQLALTNRR
                     LGYFIKNGKQYQVIGQVDRGDRDDPSDLKNYFVQNNRGELISLDNLVSISEETTPTSI
                     YHFNRYKSATVSAGLAEGKTMGDGIKVMEDLKKQLLDDTFETSLSGSSRDFAESQGNT
                     NFALMLALVLIFLVLAAQFDSFIDPFIIMVTVPLAIAGGLLSLWIFDQTINIFSQIGM
                     IMLIGLVTKNGILIVEFANQKQEKGMSKYKAAIEAASARLRPILMTSLAMALGALPIA
                     LSLGAAATSRIPLGITIVGGITFSLILTLFVVPAMYSYMSTKKKGIPEGLLQDTSLSP
                     QASTPLSEEAAVI"
     gene            5520..>6223
                     /locus_tag="VLL95_08220"
     CDS             5520..>6223
                     /locus_tag="VLL95_08220"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSR38885.1"
                     /translation="MNMRIFGAILLVSTAVTNVTAQQQVLTLNEAIQQALKKNFDLEV
                     ARNDEEIARIQNNWGNAGRLPTVSAQAGYNVSNNNLDQRLANGTTIKRGAVLFQNENV
                     SVSGQWRVFNGFRVLAAKNRLEEQEKISNIAVRQQANLVVYDIITAYLNLLRFEAQLN
                     ATQESLLLFEERMKLAENRFNIGVAAKSDYLQAVTDYNQAKNLIIQTENNIYQVKVAI
                     NNLLARDPMTEFTSSTS"
BASE COUNT         1693 a         1541 c         1526 g         1463 t
ORIGIN      
        1 tgttgaaaaa taaccgtgta ttatcaaaaa attacaggaa gtaacacatg aaaaaggttg
       61 gaatactggg aggaggacaa ttgggccgga tgctgctgca ggaagcagcc aactacccgg
      121 tggaaacatt cgtattggaa aatgaccccg gttgccccgc tgcccacctc tgtcatcatt
      181 tccatttggg aagcatcaag gactacgata ccgtgcttga atttggcaag caggtggatg
      241 tgatcaccat cgagattgaa gcggtgaatg tagatgcatt ggaagccctg gaagcaatgg
      301 gcaaaacggt gataccaagt caggcggttt tgcgtaccat caaaaacaag atcctgcaaa
      361 agcaattcta tttcgacaac aatatttcca ccccggcttt tgtagtgacg caaacccgcg
      421 aagaattgaa agcacatgcc tctttccttc cggccgtgca caagttgggc gagggtggct
      481 atgacggccg cggcgttcag atcattgaca ccgaagacca aatggcagcc ggttttgatg
      541 ccccttcagt tttggagaaa aaggtggaca tagcaatgga aatcgccatc ctggtggcgg
      601 tatcgcagca tggtcaaacg gctttgttcc cgcctgttga aatggtattt gatccctacc
      661 tcaacctcct cgattaccaa ttgtcaccgg cctccatttc caaagaaaca ctctggaagg
      721 ccgaagcctt tgccatcaac ctggttcgtg ccttcaacag tgcgggcctc tttgcagtgg
      781 aaatgctgat agacaaacaa ggcgaagttt gggtaaatga aaccgccccg agggtacaca
      841 acagcggcca ccataccatt gaggcgcatt acacatcgca atacgatatg ctttggcgca
      901 ttatgctcga ctacccattg ggcaataccg aagcgttggc tccatccgcc ctcatcaacc
      961 tgattggaga acccgggtac cagggatcgc cggtttacga gaacctggaa gaaatgctca
     1021 aaatgccagg cgtatacccg catatttatg gcaaggccga aaccaagccc ggtcgcaaaa
     1081 tgggacacgt gactgtaatg gggaccgatc ggattgacct gatcaggaaa gcaaaaacca
     1141 ttcgcgacca gctaaaggtg aaagcttgac aaaatggtat ttgcctaatc cggtgggacc
     1201 actctggtcc ctggcccttc attccatttt gccaacacct tcagcaagat ttcagagatt
     1261 ctaacgtctt atcctaaacg tatgaaattg agacctatag cttttgcaag tttcctctta
     1321 ctcacgctat ttgcctgtaa atcagaagag aagaaagaga cacccggtgg tggtggcggc
     1381 gaaagacgcc cgggaggccc ccctccggtt tttgatgccg tattggccac ctcattccag
     1441 gtagaccgaa aaatagaagc accgggcact gtattgcctg ctgaaaatac cgacctccat
     1501 cccgaagcct ccggcagagt ggttgccatt aacttcaaag aaggcagcat ggtaagcgcc
     1561 ggcacacttt tggtaaagtt gttcgatggc gacctgcagg cccaactcag aaagttggac
     1621 gtgcagctga aagtggctga agccaccgaa aagaggcaaa aagaattgct ggccatcaac
     1681 ggtaccagcc agcaggatta tgacattgcc tctttgaatg tgagcaacat caaagcagac
     1741 atggaactgg tgaaagtgaa tattgcgaaa acggaactca gggctccctt tacagggcgg
     1801 cttggtctgc gcaacatcag ccttggtgct tatgttaccc cgcaaaccat tgtcaccaat
     1861 attgcacaaa ccaacaacct taaggttgaa ttcgccgtgc cggaacaata tgcttttgaa
     1921 atggtgccag gcaaagcggt gagcattcgc accactgcta ccaggagaaa ctacaatgct
     1981 accattcttg ctgcccaaaa caccattgcg cagcaaacaa gaaatctgag cgttcgtgcc
     2041 cttgtatcca attcggatgc catgcttacg ccaggttcgt ttgtgcaggt gggcatacag
     2101 gtaggtggtg ccaaagaggc catcatgata cctacccagg cggtggttcc ttccacccgt
     2161 ttcaagaatg tgattgtaag cgaaaatgga aaagcggcat ttaaagtggt taccaccggc
     2221 tatcgcgatt ctgccagggt ggaaatcacc agtgggctga gcgtgggcga caccattatc
     2281 accaatggcc tgctcaccat caaagaaggg atgcctgtga aaacaaggtt taagaaataa
     2341 cacaccacaa tcagtaacct tcactgcacg agtatgaata tttctgaaat cagtttgcga
     2401 aggccggcac tggcgatagt aatcaacctg ctgatcttgt tgtttggctt gttgggcttt
     2461 acatttttgg gtattcgcga ctacccggtt attgaacctt ccacggtaaa cgtacgcacc
     2521 agttaccagg gtgccaatgc tgacatcata gaaaaccaaa tcactgagcc gctggaaaag
     2581 agcatcaact ctgttccggg tattcgcaat atcaccagtt ccagcagcca gggttccagc
     2641 agcatcaccg ttgaatttaa tttgggtgtg ccccttgaag aggcggccaa cgatgtgaga
     2701 gacaaagtct cgcaggcgca acggtcactc ccctccgacc tggaacaacc accggtggta
     2761 agtaagtcgg atggttttgg agaatccatt ttgtcgatgg cagtttccag cgattcacgc
     2821 aaccaactgg agattactga atttgccaac aatgtattgg ttgatcgcct gcagaccatc
     2881 ccgggtgtaa gcggcattca aatttgggga gagaaaaaat acgcaatgcg catttggatg
     2941 aatcctcaaa gaatgcgcag ccgtggcgta accgccaacc agatttcaca ggcattgcag
     3001 cgcgaaaacg tggaattgcc ttccggcaaa atatccggtg aatccactga acttaccgtt
     3061 cgcacactgg gaaggctgaa taccgaggaa gaatttgaaa acgtgatcat ccgcagcgat
     3121 gtcaatggca tcattcgttt gaaagatgta gccgaagtgg tactcggacc tgaatcagaa
     3181 gaaagtgctt ttaaagaaag tggcgttccc tccattggca tggccattgt accccagccc
     3241 ggcagtaact atattcagat tgccgatgat tttgccaaac gctttgagca aatcaagaaa
     3301 gacctgcctg ccgacatcaa gaccaagatg ttgatggatg taaccaaacc catccgcaaa
     3361 tcgctggatg aagtgaagga aacattggtg atttctattg gcctggtggt gcttatcatt
     3421 ttcctgtttt tcagaagtgt caatatggct ttccgcccat tgatcgatat cccggtctct
     3481 ctcattggcg ccttcttcat catgtatgta gcagggttca ccatcaacgt gcttaccctg
     3541 ctggccattg tattggcaac aggcttggtg gtggatgatg gcattgtggt aacggaaaac
     3601 atttataaga aaatggaacg cggcatgaac aaatgggcag ccgccaaaga aggttccaag
     3661 gaaatttact ttgccgttat ttccacttcg ataacgctgg ctgtggtatt tcttcccatc
     3721 atattcctgc aaggatttgt gggaaaactc ttccgcgaat ttgggatagt ggtggctggt
     3781 gcggtattga tctcagcgct tgtttcactt acgctgacac cggtactcaa cgtaaaactt
     3841 actcccaaaa gcgggcccaa gcatggacgt ttttatcatg ccaccgaacc cttcttccgt
     3901 ggtatggaaa atggctatcg caaattgctg ctctctttca tgaaagtaag gtggatcgcc
     3961 tttgtcatca ttgccatttg tgctatggct atttactggt tcgggactaa cctgcaatct
     4021 gaactggccc ctatggaaga ccgcagtatg ttccgcttgt cagtaacggc tcctgaaggt
     4081 accagctacg atgccatgga aaaagccatg gacaagatcc agaatttcat tttggattct
     4141 gtgccggaaa acaggggggt gatggccttt actgcaccgg gcttcaccgg cggaggttct
     4201 gtgaatactg gttttatacg ggttatgctg gtagatccac ctgaaagaag tcgcacccag
     4261 ggcgacatcg taaactacgt acaaaagaaa ctttctaaat ttcctgaagt cagggccttt
     4321 gcgctccagg agcaaaccat ttcgcaaagc cgtcgtggcg gacagccggt tcaattcgtg
     4381 atacagaaca acaacttcga taagttgaag gaaatgttgc ccaagttcat ggatgctgcc
     4441 cgacagagcc cggtattggt gggtgttgac acagatctca aattcaacaa gcccgaactg
     4501 cgcatcgaag tggatcgact gaaggccagc gaactgggcg taagtttagc ctccgtgtct
     4561 gaaacactgc aactggcact taccaacagg cgccttggat actttattaa gaacgggaaa
     4621 cagtaccagg tgattggcca ggttgaccgt ggcgaccgtg atgatccttc cgatctcaaa
     4681 aactactttg tacaaaacaa ccggggcgaa ctcatcagcc tcgacaacct ggtgtccatt
     4741 tcagaagaaa ccacaccaac cagtatttat cacttcaacc gctacaagtc ggcaaccgta
     4801 agtgccggcc tggccgaagg caaaaccatg ggtgatggca tcaaagtgat ggaagacctc
     4861 aagaagcaat tgctcgatga cactttcgaa acatcgttga gtggttcttc ccgcgacttt
     4921 gccgaaagcc agggcaatac caacttcgcc ttgatgctgg cgctggtgct catcttcctg
     4981 gtactggcag cacagttcga cagtttcatc gatccgttca tcatcatggt gacggtgccg
     5041 ttggctattg ccggtggttt gctcagcctt tggatcttcg atcaaaccat caacatcttc
     5101 tcccaaattg gcatgatcat gctgataggc ctggtgacca agaacggtat cctgattgtg
     5161 gaattcgcca accagaagca ggagaaaggg atgagcaaat acaaagcggc cattgaagca
     5221 gccagcgccc gtttgcgccc catcctcatg acgagcctgg ctatggcact gggtgctttg
     5281 cctattgcct tatcgctggg tgccgcggcc accagccgca taccacttgg tatcaccatt
     5341 gtgggcggca ttacattttc gctcatcctt acactttttg tggtgcctgc catgtactcc
     5401 tacatgagca ccaagaaaaa gggcataccc gaaggattgt tgcaggatac ttcactttct
     5461 ccgcaagcct ccactcccct ttctgaagaa gccgcagtaa tatgaaacga cctacattga
     5521 tgaacatgcg aatttttgga gcaatactgc tggtatctac cgccgtaacc aacgttactg
     5581 cacagcagca agtccttact ttaaatgaag ccattcaaca ggcactgaaa aagaactttg
     5641 acctggaggt ggcacgcaac gatgaagaaa tagcccgcat tcaaaacaac tggggcaatg
     5701 ccggcaggct gccaacggta agcgcccagg ccggatacaa tgtgagcaac aacaaccttg
     5761 accagcgtct tgccaacgga actaccatta agcggggggc tgtactcttt cagaatgaaa
     5821 acgtaagtgt gagtgggcaa tggcgtgttt tcaatggatt cagggtgttg gctgccaaga
     5881 accgattgga agagcaggag aaaatttcaa atatagccgt acggcaacaa gccaacctgg
     5941 tggtctacga tataattacc gcttacctta accttttgcg ttttgaagcc cagttgaatg
     6001 ccacccagga atcgttgctg ctttttgagg agcgaatgaa actggcagaa aaccgcttca
     6061 acattggagt ggctgccaag agcgattatt tgcaggcagt aaccgactat aaccaggcca
     6121 agaaccttat catccaaact gagaacaaca tctaccaggt aaaagtggcc atcaacaatt
     6181 tgctggcccg tgatccaatg actgaattca ccagcagcac ttc
//
LOCUS       DATIQF010000498         3001 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_175334,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000498 DATIQF010000000
VERSION     DATIQF010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3001
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175334"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1350
                     /locus_tag="VLL95_08225"
     CDS             <1..1350
                     /locus_tag="VLL95_08225"
                     /inference="COORDINATES: protein motif:HMM:NF026213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl sulfatase dimerization domain-containing
                     protein"
                     /protein_id="HSR38886.1"
                     /translation="TSPFGRVDQSIGKNISSGNIGLITPTVVITKDVEPLTVDGVKMV
                     FQNTPGTEAPAEMNTYIPDMKAFWAAENITGTIHNIYTLRGALVRDALEWSKKINEAL
                     YLFGQEATVMFASHSWPRWGNDRIQEVMRSQRDTYANLNNGVLNLANKGVTINEIHNV
                     YQVPASLQKQWSARSYHGSVEHNSRAIINRYLGYWDANPTTLIPLSPAESAPLYVEMM
                     GGASAIIKKGKSLYNEGKYKLGTEILNKLVYAEPDNQEAKDLLADCFEQIGYQQESPS
                     VRNSFLAAAYELRNGIPEGASPKTNSPDLVSAITTDLFLDFLGVRLDSKKAGDAHFVI
                     NIVHPDLNEKYVVELSNATLTSLKGFQSKSPNLTLTVKRSDMNLILFGKSSFEELLKT
                     GAAKADGDVSVLKQLMGMLDDFDVRFQIMPGTKNKNAATTKTKGGYAQEEPAVKGGE"
     gene            1704..2471
                     /locus_tag="VLL95_08230"
     CDS             1704..2471
                     /locus_tag="VLL95_08230"
                     /inference="COORDINATES: protein motif:HMM:NF022142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2490 domain-containing protein"
                     /protein_id="HSR38887.1"
                     /translation="MKFLITILAFCFLATSARSQQQPFQTWLTYNHQARLSDKWGYTF
                     DLNHRTLGTFPFNSFLSAARAGGVYQLNNALRVTAGYAWFGTIINGRSRPWLHENRLY
                     QQIQQNKVRNGIQMVQRVRLEQRFRQQFKQSSSDDVNVAFTFRARYMFQVGGPLIKNA
                     KTSRTALSWQAANEVFFHFGENLNGSNFDQNRTLAGVLINLGKVTDLAVLYQFIAQRQ
                     PLRETTVGIHSVRFTLFQNLDLRKAKKTQPIDIPTLD"
     gene            2696..>3001
                     /locus_tag="VLL95_08235"
     CDS             2696..>3001
                     /locus_tag="VLL95_08235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38888.1"
                     /translation="MFFGMVAAMLLAACEKEIDVVPSDLEPVLVVEGTIENDQFPRVI
                     LTRSVGFFDTLSLDALANSFERNATVTVSDGSRTIPLKEYSIQFGPSKFFFYTVDSTN
                     "
BASE COUNT          808 a          708 c          721 g          764 t
ORIGIN      
        1 accagtccct tcggccgcgt tgaccaatcc ataggcaaga atatttcttc tggtaatatt
       61 ggactcatta ctccaactgt tgtcatcacc aaagacgtag aaccgctgac ggtggatggt
      121 gtgaaaatgg tgttccagaa tacaccaggt accgaggctc ctgccgaaat gaatacctat
      181 atccccgaca tgaaagcttt ctgggcggcg gaaaacatta caggaaccat tcacaatatt
      241 tataccctgc gtggggccct ggttcgtgat gccctcgaat ggtctaagaa gatcaacgaa
      301 gccttgtacc tgttcgggca ggaagccact gttatgtttg cttcacactc atggcctcgt
      361 tggggcaacg accgcatcca ggaagtgatg cggagtcagc gtgatactta tgccaacctg
      421 aacaatgggg tgttgaacct ggccaacaag ggtgttacca ttaacgaaat acacaatgtt
      481 taccaggtgc cagccagcct gcaaaagcag tggtcggccc gcagttacca cggttcggtg
      541 gagcacaact cccgtgccat catcaacagg tacctgggtt attgggatgc caaccccact
      601 acactcattc ctttgtcacc ggctgagtca gctccgcttt acgtagaaat gatgggtggc
      661 gcttctgcca ttatcaaaaa aggcaagtcg ctgtacaacg aaggcaaata caaactggga
      721 accgaaatcc tgaacaaact ggtatatgct gaacctgaca accaggaagc caaagatttg
      781 ttggctgatt gttttgaaca aataggctac cagcaggaaa gccccagtgt gcgtaacagc
      841 tttttggctg ctgcctatga attgcgcaat ggcattccgg aaggcgcttc tcccaaaacc
      901 aacagtcccg atttagtgag tgccatcacc accgatttgt ttcttgactt tttgggtgta
      961 aggctcgaca gcaaaaaggc cggagatgct cattttgtga tcaacattgt acatcccgac
     1021 ctgaatgaaa agtatgtggt agaattgagc aatgccaccc ttaccagcct taaaggcttc
     1081 cagtcaaaga gtcctaacct cactttgaca gtgaagcgca gcgatatgaa tctcatcctg
     1141 tttggcaaat cctcctttga agaactgctg aaaacgggtg cagccaaggc tgacggtgat
     1201 gtgagcgtat tgaagcaact gatgggtatg ctggatgatt ttgatgttcg tttccaaatc
     1261 atgcccggta ccaaaaataa aaatgcagca accactaaaa ccaaaggtgg atatgcgcag
     1321 gaagaaccag ccgtgaaggg tggtgaataa agttccattt ttccaagaaa gggagggcag
     1381 ggtattcctg ccctcttttt catagttact tttgtttagc agctttcacg atctcattta
     1441 gaagcacgta ctgccagcaa ccacgctgat aaaacaggaa tttttgatgg tgccaacctg
     1501 gggcatggca aatcactgcg gtatatgctc agcccacgta aacaggtaaa tgtatcgctg
     1561 ggtgaaggct ggagaactca tgggctgcaa ggcattttcc tcaatttgcg ggaaatgtgc
     1621 tgatgaagac ggcgcttaag ctttaatttg tttgatttat ggttgaccct ttttaaggac
     1681 gtaggttcaa atgattacca ggaatgaaat ttcttataac gatattggct ttctgctttt
     1741 tggcaaccag tgcgaggtcg caacaacagc catttcaaac ctggctcacc tacaaccacc
     1801 aggcaaggct gagcgataaa tggggatata ctttcgactt gaaccaccga accctgggaa
     1861 cattcccttt caattccttc ctgagtgctg ccagggctgg cggtgtatac cagctcaaca
     1921 atgcactgag ggtgacggcg ggttacgcct ggtttggcac cattattaac ggccgcagtc
     1981 gcccctggct tcacgaaaac cgtttgtacc agcagataca gcaaaacaaa gtgcgcaatg
     2041 gtattcaaat ggtgcaaagg gtccggttgg aacaaaggtt tcggcagcag ttcaagcaat
     2101 cttccagcga tgatgtgaac gtggcattca ccttcagagc ccgctatatg ttccaggtcg
     2161 gtggcccgct catcaaaaat gccaaaacca gcaggacggc actcagctgg caggccgcca
     2221 atgaagtatt ttttcatttt ggggaaaatc tcaatggcag caatttcgat cagaaccgga
     2281 cactggccgg cgttttgatc aacctgggca aggtaaccga cctcgcagtc ctttaccaat
     2341 tcattgcgca gcgacaaccc ttgcgtgaaa ctaccgttgg cattcattca gtgaggttca
     2401 cccttttcca gaacctggat ttaagaaagg caaaaaagac ccaacctatt gacattccta
     2461 cactggacta agaatttcct cctcaattaa cattcaacaa tgttgcataa ggatggaggg
     2521 caacttattg ccaggtttga ttgttagaat taggcgcggt atttcctgag tttgggtgaa
     2581 caccaaaaat gttcctaaag tttagggttg ggcattttcc aaaaggcccg gtgctacctt
     2641 gcagacttca ttcactattc acacaaatat gttcagggct ttcaggcata aaagtttgtt
     2701 ttttggaatg gtagcggcca tgcttttggc tgcttgcgaa aaggaaattg atgtggtgcc
     2761 gtccgatttg gagccggtgc tggtggtaga aggcacgatt gaaaacgatc agttcccgag
     2821 agtgatcctc acccgctctg ttggtttttt tgataccctc agcctggatg cgcttgccaa
     2881 ttcatttgaa agaaatgcga cggtaaccgt cagcgatgga agccgcacca ttcctttgaa
     2941 ggaatacagc attcagttcg gtccttccaa attctttttt tacacagtgg attcaaccaa
     3001 t
//
LOCUS       DATIQF010000499         5481 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_99201, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000499 DATIQF010000000
VERSION     DATIQF010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5481
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99201"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1089)
                     /locus_tag="VLL95_08240"
     CDS             complement(<1..1089)
                     /locus_tag="VLL95_08240"
                     /inference="COORDINATES: protein motif:HMM:NF024181.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SusD/RagB family nutrient-binding outer membrane
                     lipoprotein"
                     /protein_id="HSR38889.1"
                     /translation="MKKFIQHSTIAMLAAVTLAGCEKFLDVNNDPNRPTKPPINGLLA
                     SATQQTGLNMQRSANTTSYYVQYLASPNSASPTDIYDRIDLSGTWRSLYDNMADIYDM
                     EKLALEQNSSEHLGVSKVLMAVNLSMVYSLFGDAPFTEALSGATFTPQYDSEESLHNA
                     CIKLLDDGIAELRKTTSALRLGATQDFVHGGNRTLWIRTAYAMKARLLNRLTRKSTYN
                     AAAVLSAVDSAYTSNAQDARIATFAVRNPWAAVARNNAALVLDGWISDNLIKAMDGTR
                     KGVVDPRLPFYTDTTRFGDYRGTPNGRGRIGTGTNREECYLTINDFYSADNAPLFIIT
                     FEEVKMIEAEAALRANNRTRAYTAYLAAI"
     gene            complement(1121..4300)
                     /locus_tag="VLL95_08245"
     CDS             complement(1121..4300)
                     /locus_tag="VLL95_08245"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSR38890.1"
                     /translation="MKKMIRLLACFLVLFLGSQVQAQNRTVKGKVADQNGQPVPYASI
                     TLKGTNKGTSADVQGNFTIEVPAGKPARLLVTSVGFEDQEIVVEGESVSVTLQSGTAL
                     GEVVVTAFGVKQKKKSLGFATQEVGNKELMESKQLNPVAALQGRVAGVQINSVGGGPG
                     QSARIVIRGIKSLAPGANNQPLFVIDGVVMDNSTSAEFGSAALRGMTNRAADINPNDI
                     DNISILRGGAATALYGIGGSNGVVLITTKSAKVGKMRVNFSTTYGIENVNQFPEVQSR
                     FTQGYYTERDPTYNLQGYNPRSFFPAWGPTVEAARAVDPSHPNELFNHYSRAYESGYQ
                     TRNTISVTGGTENALLSSSLSYNYHKGVMPNTNFTSINAKLGAQFRLSNKLRFNPTIL
                     YTNSGGLRYNADRFNESLSYWSPRWDVRDYINENGTMKTYGNNNPIFGAYQNLQKDNV
                     DRVITNANLVYEPAKWLNVNYRFGMDYTADNRRSTKPGAKGLAGEIALTDGGLLGVSG
                     ALGSVGEYRLTNRILNSNLLITATKDWSDKFNTVFRVGNEIRDRNFQNVAAEGADLDI
                     PDLLSLNNAKVRSAQQRIEQERSVSFYGDVTLGWDDYLFLNATLRNDRVSNLPVENNS
                     FWYPSVSLSYVFSQHLKLPKWFTYGKLRASYSQIGIAAPTPYLTNTYYANPFGQPVGG
                     VIPWSREDQRGDPNLLPEFTQNREIGAEFRFLNGRIGADVTYYQINSKDLIVPILVST
                     ASGFNSVVTNAGEIQNKGWEITLNGSPIANNNFRWDVAINLTNNNNKVLKVSSASNEI
                     VVGSQFGYLGATVTQKYVVGQPVGGLYGTSYQRYYGNKADDRMTLQRDLPVVITGGTG
                     SLRGFPARDLTQRLLGNSQPRWIGGINNSFSYKGFSFNFLFDFRTGYEKYNQLGNFMS
                     AFGIAKYTEDRNDTKVFNGVLADGTANTQQVWLGQGVGPDGRNYTDGFYRNVHRGVSE
                     NFVEDASWIRLRTLGLSYQFPAKWFSKNNFIKSMNANITGDNVWLSTPYTGFDPETSA
                     TQASSNADGFAGFSYPAVRSWFFTLNVSF"
     gene            4444..4758
                     /locus_tag="VLL95_08250"
     CDS             4444..4758
                     /locus_tag="VLL95_08250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38891.1"
                     /translation="MAIYGCFHSTPNQLFLREMGAFKRLDITFKAVSPLQFMEKKTRF
                     IRVGYKKVGSIKPVSGCMLQHIVNPVGMASIKAWPTSGNCHSNLSVQNDRFCNRHFMI
                     LL"
     gene            4820..>5481
                     /locus_tag="VLL95_08255"
     CDS             4820..>5481
                     /locus_tag="VLL95_08255"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HSR38892.1"
                     /translation="MKIIHTLTLVLLLHFAWAQSPGRVIKGTTIDNATGTPLPYTSIG
                     IPHKSIGTVSDSSGQFTLTLPPDHPLTDSIVFSHVGYESQAKRIDGLLRQVSAIRLQP
                     STNSLSEVVVKPKITKSKIVGRNGKGLSTFHYNFYTASEKSVDDRLSKEAGMLFELKD
                     ECRIDELNFYISGNEFRSLKFRVLFYHVKDGLPTTPMFDRDIIFEIKDGYRGWFKVDL
                     KT"
BASE COUNT         1312 a         1378 c         1337 g         1454 t
ORIGIN      
        1 aatagctgcc aggtatgctg tgtaagctct tgtcctgttg ttagccctca aagcagcctc
       61 ggcctcgatc atttttacct cttcaaaagt gatgatgaaa aggggcgcat tatcggcact
      121 gtaaaagtcg ttgatggtca ggtagcactc ttccctgttg gtacctgtgc ctatacgacc
      181 tctgccattg ggggtaccac ggtagtcgcc gaagcgtgtg gtatcggtgt agaaaggcag
      241 acgtgggtcc actactcctt tgcgggtacc gtccatggct ttgatcaggt tatcactgat
      301 ccagccatcg agcaccaagg cggcattgtt gcgtgccaca gcagcccacg gattacgcac
      361 ggcaaaagtg gctatgcggg catcctgcgc attgctggtg taggcgctgt ctactgcgct
      421 aagcaccgcg gcagcattgt aagtgctctt gcgggtgagg cgattcagca accttgcctt
      481 catcgcatag gccgtgcgga tccaaagagt gcggttgccg ccgtgtacaa aatcctgcgt
      541 ggcgccgagc cgcaaagcac tggtggtttt gcgcagttca gcaatgccat catcgagcaa
      601 cttgatgcag gcattgtgaa ggctttcttc cgaatcgtat tgaggtgtaa aagtggcgcc
      661 gctgagtgcc tctgtaaatg gagcatcacc aaacagtgaa tacaccatgc tgaggtttac
      721 cgccatcaac actttgctca cgcccaggtg ttccgaactg ttttgttcca gcgccagctt
      781 ttccatgtcg tagatgtcgg ccatgttatc atacaggctg cgccaggtac cactcagatc
      841 tatgcgatca tagatgtcgg tgggcgatgc agagttgggc gatgccaggt attgcacata
      901 gtacgaggta gtattggccg acctttgcat gttcagcccc gtttgttggg tagcggatgc
      961 cagcaaacca ttgatgggtg gcttggttgg cctgtttgga tcattattga catcaagaaa
     1021 tttttcgcag ccagcgagtg ttaccgctgc cagcatggcg atagtgctat gttgaatgaa
     1081 ctttttcatt gtattcaatt ttttgaaatg ctgacaggta ttagaaacta acattcaaag
     1141 tgaagaacca gctgcgaaca gcggggtagc tgaaaccggc aaaaccatcg gcattgctgg
     1201 aagcctgtgt tgcacttgtt tcaggatcaa agccggtata cggtgtgctc agccaaacat
     1261 tatcgccggt aatattggcg ttcatggatt taatgaaatt gttcttgctg aaccatttgg
     1321 ctgggaactg gtagctaagc ccgagggtac gcaggcgaat ccaggaagca tcttcaacga
     1381 agttttcact cacaccacga tgaacgttgc ggtaaaatcc gtcggtgtaa ttgcggccat
     1441 caggaccaac gccctggccc agccacactt gttgggtatt ggcggtacca tcagccagca
     1501 ctccattgaa cactttggta tcgttgcgat cttcggtgta tttggcaata ccgaaggcgc
     1561 tcatgaaatt gcccaattgg ttgtacttct cgtaaccggt gcggaagtcg aacaggaaat
     1621 tgaatgaaaa acctttgtag ctaaagctgt tgttgatacc tccaatccac ctgggttgcg
     1681 agttgcccag caaacgctgt gtaagatcgc gggcagggaa gccgcgcaaa gaacccgttc
     1741 cgcccgtaat tacgaccgga agatctcttt gcagggtcat cctgtcatca gctttgttgc
     1801 cataataacg ctggtagctg gttccataaa ggccgcccac cggctgaccc accacatact
     1861 tctgcgttac ggtagcaccc aaataaccaa attggctgcc caccactatt tcgttgctgg
     1921 cactgctcac cttgagcacc ttgttgttgt tgttggtaag gttaatggct acatcccaac
     1981 ggaaattgtt gttggcaatg gggctaccat tcagggtgat ttcccaaccc ttattctgga
     2041 tttcgccggc attggttacc acactattga aacctgaagc cgtagacacc aggatcggaa
     2101 caatcaggtc cttactgttg atttggtaat aagtcacatc ggcaccaata cggccattca
     2161 ggaagcgaaa ctcagcacca atctcgcggt tctgtgtaaa ctctggcagc aggttggggt
     2221 cgccacgctg gtcttcacgg ctccagggaa ttacaccccc aacgggttgg ccaaatggat
     2281 tggcataata agtattggtg aggtaaggcg taggtgccgc aataccaatt tggctatagc
     2341 ttgccctgag cttgccatag gtgaaccatt tgggcagttt caaatgctga ctgaacacat
     2401 aagaaaggct gacagaagga taccagaatg agttgttttc aaccggcagg ttgcttaccc
     2461 ggtcattccg cagtgtagca ttcagaaaca agtaatcatc ccagcccagg gttacgtctc
     2521 catagaagct tacgcttcgc tcctgctcaa tgcgttgctg cgcactgcgc actttggcat
     2581 tgttgagact cagcagatcg ggtatgtcga gatcagcacc ttcggcggcc acattttgaa
     2641 aattgcggtc acgtatttca tttcctacac ggaacacagt gttgaattta tcggaccaat
     2701 ctttggtagc ggttatcaac aggttgctgt tgagaatgcg gttggtaagc ctgtattcgc
     2761 ccacgctgcc cagtgcgccg cttacaccca acaacccgcc atctgtaagt gcaatttcac
     2821 cagccaggcc tttcgccccg ggcttggtgc tgcgacggtt atcggctgta tagtccatgc
     2881 cgaagcggta gttcacattc agccatttgg ccggctcata taccaggttg gcattggtaa
     2941 taacacgatc cacattgtcc ttttgcaggt tttggtaggc accaaatatg gggttgttat
     3001 tgccgtaagt tttcatggta ccgttttcgt tgatatagtc cctcacgtcc caacgggggc
     3061 tccagtaact gaggctttca ttgaaacggt cggcattata ccgcaggcca ccactgtttg
     3121 tatagaggat ggtagggttg aagcgcagct tgttgctaag tctgaactga gctcccaact
     3181 ttgcgttgat gctggtaaaa tttgtgtttg gcatcacccc tttgtggtag ttgtagctca
     3241 agctgctgct gagcaatgca ttctcagtac caccggtcac gctaatggtg ttgcgggttt
     3301 ggtatccgct ttcataggcc cgtgaatagt gattgaacag ttcgttaggg tgcgaaggat
     3361 cgactgccct tgccgcttca actgtaggac cccaggcagg gaaaaagctg cgtgggttat
     3421 agccttgcaa gttgtacgtc gggtcacgtt cggtataata gccttgtgtg aacctggatt
     3481 gaacttcagg gaactggttt acattttcta ttccataggt ggtgctgaag ttgaccctca
     3541 ttttacccac tttggcactt ttggtggtaa tgagtaccac accgtttgaa ccaccaatgc
     3601 cgtacaaggc agtggcggcg ccaccccgca atatggatat gttgtcgatg tcgttggggt
     3661 taatgtcagc cgcacggttg gtcatgcccc ggagagccgc acttccgaat tccgcactgg
     3721 tgctgttgtc cattaccacc ccgtctatca caaataaggg ttggttattg gcaccgggcg
     3781 ccaggctctt aataccacgg ataacaatac gggcactctg gccaggtccg ccacccacac
     3841 tgttgatctg tacacccgcc acgcgaccct gcaaagcggc caccgggttc agctgtttgc
     3901 tttccatcag ctccttgttt cccacctcct gcgtagcaaa accgagagac tttttcttct
     3961 gcttcacgcc aaaggcagta accactactt cgccaagagc tgtgccgctt tgcagcgtta
     4021 cactgacaga ctctccctct accactattt cctggtcttc aaagcccacg gaagtaacca
     4081 gcagccgtgc cggctttccg gctggcactt caatggtgaa gttgccttgt acatcagcgg
     4141 aagtaccctt gttggtaccc ttgagggtaa tggaagcata gggtacaggt tgtccgttct
     4201 ggtcagccac cttccccttt acagttcggt tttgtgcctg gacttggctt cctaaaaaca
     4261 ataccaggaa gcaggccagt agcctgatca tttttttcat tgcagtagca gtttggtgtt
     4321 ttaaagaaat gcgtcttcaa tacaagtgaa acaatgcgta aatcgtattc accagtagct
     4381 atgaaaatag ggcgtttgaa ttattcccca caacacctcc ttcttaaatt tatttaaaaa
     4441 caaatggcca tttatggctg ttttcattca accccaaatc agcttttcct tagggaaatg
     4501 ggcgctttca agcgtctgga cataacattc aaagctgtca gtcctttgca attcatggaa
     4561 aagaaaacca gatttattcg cgtaggttat aaaaaagttg gcagcatcaa accagttagt
     4621 ggctgcatgc tgcaacatat tgtaaatcct gtcggcatgg cgtcaatcaa agcatggcct
     4681 accagcggta attgccattc aaatctctcg gttcaaaatg atcgtttctg caaccggcat
     4741 tttatgattc tcttgtaatg ttcgataagc cttgctatta cacccggcat atttttgccg
     4801 cctcattaca cgcacattta tgaaaatcat tcacacgctt acacttgtat tgcttttgca
     4861 ttttgcctgg gcacaatcac ccggtcgtgt tattaaaggc accactatag acaacgccac
     4921 cggaactcca ttaccctaca ccagtattgg catcccgcat aagagcatcg gcaccgtttc
     4981 ggactccagt ggtcaattca ctttaaccct gcccccggat catccgttga ccgattcaat
     5041 cgtattctca catgtgggat acgaaagcca ggcaaagaga attgatggcc tattgcgcca
     5101 ggtatcagcc atcaggctgc aaccctccac caactccctt tcggaggtag tggtgaagcc
     5161 caaaatcacc aaaagcaaaa tcgtaggacg caacggcaaa gggctttcca cctttcatta
     5221 taacttctat accgcttcag aaaagtcagt ggacgaccgg ctgagcaaag aagcaggcat
     5281 gctgtttgag ttaaaggacg aatgccgcat cgatgaactc aatttctaca tttcaggaaa
     5341 cgaattccgc tctctcaaat tcagggtatt gttctaccat gtcaaagatg gattgcctac
     5401 tacccccatg tttgatcgtg atatcatatt cgaaataaag gacggctacc gtggctggtt
     5461 caaagtagac ctgaaaacat a
//
LOCUS       DATIQF010000500         2461 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_175350,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000500 DATIQF010000000
VERSION     DATIQF010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2461)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2461)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2461
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175350"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            321..1499
                     /locus_tag="VLL95_08260"
     CDS             321..1499
                     /locus_tag="VLL95_08260"
                     /inference="COORDINATES: protein motif:HMM:NF025720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4407 domain-containing protein"
                     /protein_id="HSR38893.1"
                     /translation="MQQAKTMDGNVSPNNTDRFLWWLSTAEPELIADCVVDRNRYRIV
                     GITVASTWLFATLAWTYFFSTTVDSPFAFVPLGIFMGWVVLSIDRALIKGIGRAGGKT
                     IGTLVLRMALALTIGLFMAQPAVLYLFDKEVKMQTSLDNETRKQAKRAQLDSLYAGQK
                     QEIQQAVAGLQQQLQTSYNDMLNAQRNYLAETDGTGGSGKVGISVIALAKKGEYERLE
                     QLYRQQEAQVRPKMDTLESRLRQIEVTKQQAEIQFASLLNNGFLTRIEAMQNLISGNR
                     VVAFRYYLIVALLMLIELMPVIVKSLLPAGPYENLVRLTEEAEQELARVRIGEQQASE
                     MELTRRTSAANAEAIDQLMRVHPSLAEHHIDQMRRQWQQDENDSFKEMIRSLKRRVLG
                     "
     gene            1715..>2461
                     /locus_tag="VLL95_08265"
     CDS             1715..>2461
                     /locus_tag="VLL95_08265"
                     /inference="COORDINATES: protein motif:HMM:NF023495.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rnase Y domain-containing protein"
                     /protein_id="HSR38894.1"
                     /translation="MDPLIVSIIIGVVSLAVGLVAGKIVFSANTKKQVTEAEQQAQKM
                     IADAQAAAETLKKEKLLEAKERFVQMKAEHDKEVLERNKKIADTEARVRSLEQSLNSK
                     SGNLEKQIKENEAIKENLNRQIEVVNLKRSELEKHQEEHIRRLEKIASLTADEARNQL
                     IESLKNEAQTRALALQQEIIDDAKQKATKEARKIIIQTIQRTAAEQAIENAVTVFNLE
                     TDEIKGQIIGREGRNIRAIEAATGVDLIVDD"
BASE COUNT          693 a          611 c          616 g          541 t
ORIGIN      
        1 ggtcgcggaa tttcatttcc ttccattgct ctccgttgat ggatttaaac tttttcaagg
       61 tgggtatagt ttgaaattaa caatatgcca gcgaagcaat cgttggcgtt ttttcatcac
      121 gtggcccaaa tataattata atcaccattt ataaagccat tcacccgcac aatttaccaa
      181 ccatcatgat ggtagcctat tttttacccg gttccatacc attcaccggc cctcttcgtt
      241 tatttgtaca gccatcctga gtaagttatg taatgcaggc ctttgcctgt gtcagatcaa
      301 cttctaatca aactgcatgt atgcaacagg cgaaaacaat ggatggcaat gtctctccca
      361 acaacactga ccgtttctta tggtggctga gtacagccga gcccgaatta attgccgact
      421 gcgtggtgga ccgcaatcgt taccggatcg tgggcatcac cgttgcttcc acctggcttt
      481 ttgccacgct ggcctggact tattttttca gcaccacagt ggattctcca tttgcattcg
      541 tgcccctggg aatattcatg ggttgggttg ttttatccat cgacagggcc ttgatcaaag
      601 gcattggtcg tgccggtggc aaaaccatcg ggacactggt actgcgcatg gcactggcgc
      661 ttaccatcgg ccttttcatg gcacagcctg ctgttcttta cttgtttgac aaagaagtga
      721 agatgcaaac ctcactcgac aacgaaaccc gcaagcaggc caaacgagca cagttagaca
      781 gtttgtatgc aggccagaag caggagatcc agcaggctgt ggctgggctt cagcagcaat
      841 tgcaaaccag ctacaacgac atgttgaatg cccagcgcaa ttacctcgca gaaaccgacg
      901 gaaccggcgg cagcggcaag gtgggcatca gcgtgatcgc cctggcgaaa aagggggaat
      961 acgagagact ggagcaattg tacaggcagc aggaggcgca ggtgcgaccc aaaatggata
     1021 ccctcgaaag caggttgcgc cagatagaag tgaccaaaca gcaggccgaa atccagtttg
     1081 ccagcctcct caacaatgga tttcttaccc gcatagaagc aatgcaaaac cttatttcgg
     1141 gcaacagggt ggtggctttc aggtattacc tgatcgttgc attgctgatg ctcattgaac
     1201 tgatgccggt aattgtaaag agcctgctcc ctgcgggccc atatgaaaac ctggtgcgcc
     1261 tgacggagga agcagagcag gaactggcta gggtcagaat aggggagcag caggccagcg
     1321 aaatggaact gaccaggaga acatcagcgg ccaatgccga ggccatcgat caactcatga
     1381 gagtccatcc cagcctggct gagcaccata ttgatcaaat gcgccgccaa tggcagcagg
     1441 atgaaaacga cagtttcaaa gaaatgatcc gatccctgaa acggcgggta ctaggttgat
     1501 tttcaatttt atgggtcctt tccgggtaag cgcttcctac cgttctggtg gagaagggcg
     1561 gggtcttctt tggcatttgg gcatttgcaa agctgtagca acttgcaaca tcctatttcc
     1621 gtattttcgc ccgctaacat tttcatttag aacctcaaaa cgatgcctgc taggaataca
     1681 tacccaagtt tgccatcgca taaaacatca tcaaatggac cccttaatag tatccataat
     1741 tatcggagtt gtcagcctcg ccgtaggctt ggtggcgggt aaaattgtct tttcagccaa
     1801 cacaaaaaag caggttactg aagctgagca acaagctcaa aaaatgattg ccgacgcaca
     1861 agccgccgcc gaaaccctga agaaagaaaa gttgctggag gcaaaagaac gctttgtgca
     1921 aatgaaggct gagcacgaca aggaagtgct ggagcgcaat aagaagattg ccgataccga
     1981 agcccgtgtt cgcagtttgg agcaaagcct gaattcaaag tccggcaacc tggaaaagca
     2041 gatcaaggaa aatgaggcca tcaaagaaaa cctcaacagg caaattgagg tggtaaacct
     2101 taagcgcagc gaactggaga aacaccagga agaacacatc cgccgcctgg aaaagattgc
     2161 ctcactcact gctgatgaag cccgcaatca actgattgaa agcctgaaga atgaggcaca
     2221 aacccgtgcc ctggcgctgc agcaggaaat cattgacgat gccaagcaaa aggcgaccaa
     2281 ggaagcccgc aagatcatca tacagactat tcagcggacc gccgccgaac aggccattga
     2341 aaacgcggtg actgttttca atttggaaac cgacgaaatc aagggccaga tcatcggtcg
     2401 tgaaggccgc aacatcaggg ccattgaagc cgccaccggg gtcgacctga tagtagatga
     2461 t
//
LOCUS       DATIQF010000501         1986 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_251375,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000501 DATIQF010000000
VERSION     DATIQF010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251375"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            139..618
                     /locus_tag="VLL95_08270"
     CDS             139..618
                     /locus_tag="VLL95_08270"
                     /inference="COORDINATES: protein motif:HMM:NF024634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HSR38895.1"
                     /translation="MNLKEYFSNIFNGVKSLATGMKVTGGYFLRHHKEKITEQYPDNR
                     STLVLAERFRGEVVMLHDENNEHACTGCTACELACPNGTIKVVTKFDMTPEGKKKKAV
                     DTFIYHLELCTMCNLCVEACPTGAITMAPTFEHSVFDRSKLTKVLNKPGSKIRAGVE"
     gene            643..1212
                     /locus_tag="VLL95_08275"
     CDS             643..1212
                     /locus_tag="VLL95_08275"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HSR38896.1"
                     /translation="MEISTIIFYLIAAFILGMALLAVTAKRIFRSAIWLLFTLVGIAS
                     LYFWMEVEFIAAVQILVYVGGIVVLIIFSIFLTQQADKDMPAPSAGRKAAAAIAALLG
                     LGFVGSLAYQYGFQPSGAAFDNEVSRIGEAMLNTETDGFALPFEAVSLLLLAAMVGAI
                     VIAMKEEQPKVVETKKAKATEEVAELVEG"
     gene            1359..1667
                     /gene="nuoK"
                     /locus_tag="VLL95_08280"
     CDS             1359..1667
                     /gene="nuoK"
                     /locus_tag="VLL95_08280"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF004321.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HSR38897.1"
                     /translation="MVPVSHILLLSTALFFIGMYGLFTRRNMIAILMSIELILNSINI
                     NFIAFNKYVWPGKLDGVFFTIFIITIAAAEAAIAIAIIINLYRSHLSIDVDDAAELKY
                     "
     gene            1685..>1986
                     /locus_tag="VLL95_08285"
     CDS             1685..>1986
                     /locus_tag="VLL95_08285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38898.1"
                     /translation="MNYALYIPLLLLLPLSSFVVLGIWGRQYIRQAAGVIGTAVLLTV
                     TAISVYTAWQYFMVTGQSNGTYQPIIAVNMSWLQFGYKDLSIDMGLLLDPISVMMLV"
BASE COUNT          556 a          484 c          474 g          472 t
ORIGIN      
        1 ggaaaattca ttcaatacct gaatagcact gatcacaaag gattaaaatt caaggacaga
       61 aaatgaacaa aggcagataa aaagcaatcg gtttgagttg aagaaccaaa aacaacaaac
      121 cacaaacgaa aaacatttat gaacctgaaa gaatattttt caaacatttt caacggcgtt
      181 aaatcgttgg caaccggcat gaaggtgaca ggcggttatt tcctgcgcca tcataaagaa
      241 aagatcaccg agcaataccc cgacaacaga agcacgctgg tgctggctga acgtttccgg
      301 ggcgaagtgg tgatgctgca cgatgagaac aatgaacatg cctgcacggg ctgcactgcc
      361 tgcgagctgg cctgccccaa tggaaccatc aaagtggtga ccaagtttga catgacacct
      421 gaagggaaaa agaaaaaagc cgtcgacacc tttatctacc acctggaact ctgcaccatg
      481 tgcaatctct gtgtggaagc ctgtcccacc ggcgccatta ccatggcccc cacattcgaa
      541 cacagtgttt tcgaccgcag caaactgacc aaggtgctca ataaacccgg ctccaagatc
      601 agggctggcg tggaataagt accctcaaaa gcaaaacgca ttatggaaat atcaacgatc
      661 atattttatc tcatagcagc cttcatcctg gggatggcac tgctggcggt taccgcaaag
      721 cgaatcttcc gctctgccat ctggttgctg tttacattgg tgggcattgc ctcactgtac
      781 ttctggatgg aagtagaatt tatagcggct gttcaaatat tggtttatgt aggtggcatt
      841 gtggtactca tcatcttcag catcttcctg acccagcaag ccgataagga catgccggca
      901 ccatcggcag ggcgcaaggc agcggctgct atcgctgcgc ttttgggtct cggctttgtg
      961 ggttcgctgg cctatcagta cggctttcag ccgagtggtg ctgcattcga taacgaggta
     1021 tcccgcatag gtgaagccat gctgaatacg gaaacggatg gatttgcatt gcccttcgaa
     1081 gccgtgagcc ttttgctttt ggcagccatg gtgggcgcta ttgtgatagc catgaaagaa
     1141 gagcaaccga aagtggtgga gaccaagaaa gcaaaggcca ccgaggaagt ggcggagttg
     1201 gtggaaggat gaatgatgaa tgatgattta tgaatgatga atagttttta actgttgatt
     1261 attcaatatg gatataccgg caagtaagta gcaccttaac agaaaaagaa cgagccggca
     1321 tcgaagaacc aaaaacgaaa aacaaaaaac aacaaacaat ggtccccgtt tcccatatac
     1381 tgctgctgag tacagcgttg tttttcatcg gcatgtacgg cttgtttacc cgccgcaaca
     1441 tgattgccat tctcatgagc atcgagctca tcctgaacag catcaatatc aatttcatcg
     1501 ccttcaacaa atacgtatgg ccgggcaaac tcgatggtgt cttctttacc attttcatca
     1561 tcaccattgc cgcggctgaa gcggctattg ccatagccat catcatcaac ctctatcgca
     1621 gccacctgag cattgatgtg gacgatgccg ctgaactgaa atactaatcc tgcaatcaac
     1681 cgacatgaac tacgcattat acatccccct gcttctgctg ctgccgctgt ccagttttgt
     1741 ggtgctgggc atctggggcc gccaatacat tcgccaggca gcaggcgtca ttggcactgc
     1801 agtattactg acagtaaccg ccatctccgt gtacacggca tggcaatact ttatggttac
     1861 cgggcaaagc aacggcacct atcagcccat tattgcagtg aatatgagtt ggctgcagtt
     1921 tggctacaaa gacctcagca tcgatatggg cctgctgctc gatcctattt cggtcatgat
     1981 gctggt
//
LOCUS       DATIQF010000502         2251 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_114835,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000502 DATIQF010000000
VERSION     DATIQF010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114835"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..225)
                     /locus_tag="VLL95_08290"
     CDS             complement(<1..225)
                     /locus_tag="VLL95_08290"
                     /inference="COORDINATES: protein motif:HMM:NF017451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four helix bundle protein"
                     /protein_id="HSR38899.1"
                     /translation="MATITRFEELEIWQLAREYCKLIFPLTCELPFAKDFKLRDQLND
                     SSGSIMDNIAEGFERGGKMEFIQYLSVAKGS"
     gene            complement(279..1355)
                     /gene="nuoH"
                     /locus_tag="VLL95_08295"
     CDS             complement(279..1355)
                     /gene="nuoH"
                     /locus_tag="VLL95_08295"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF004741.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HSR38900.1"
                     /translation="MISFEQIASWIHEWLYSNMHPTLALIIEFAIVGVLIIALFAVLG
                     LVLVMMERKVSSWMQLRLGPNRIGPGGWFQTVADTVKLIVKEGMTPNNVDRLLFNIAP
                     VLVIIVSMVIMAPLMFAKGIQIWDVNIGVLFVAAVSSLSIIGILMAGWASNNKYSLLG
                     AMRSGAQIVSYELSAGLSILTIVVLTGSLKMSAIVEAQQTGWWLFKGHIPAIIAFVIF
                     IIAATAETNRAPFDMAEAESELTAGFHTEYSGMKFALFFLAEYVNIFVVCAIGATLFL
                     GGWMPFHIGNWTQFNNIMDWIPSSVWFFGKTFFLIFVIMWFRWTFPRLRIDQLLNLEW
                     KYLLPISMFNLLLVTVIALAGWHF"
     gene            complement(1493..>2251)
                     /locus_tag="VLL95_08300"
     CDS             complement(1493..>2251)
                     /locus_tag="VLL95_08300"
                     /inference="COORDINATES: protein motif:HMM:NF012566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38901.1"
                     /translation="WGSVAMDCGAVTPFFLAFREREMINSIMEETCGARLTMNYMVPG
                     GVMFDLHPNFRKSVKDFIAHFKTKIDEYDELVTSNIIFQNRMKGVGVLSKEDAISYGC
                     TGPTARGSGVSCDVRKHFPYEVYDKLQFNEIVLTEGDSYARYLVRLAELRESISIIDQ
                     LIDNIPEGDFQAKTKAVLKLPKGEFYSKVETPRGELGVYIVSEGGTTPYRIKFRSPGF
                     SNLSALDHMARGQKIGDLVAMMGTLDLVIPDIDR"
BASE COUNT          582 a          554 c          544 g          571 t
ORIGIN      
        1 agagcctttg gctacactga ggtattggat gaattccatc tttcctcccc gttcaaaacc
       61 ttcggctata ttgtccataa tacttccact tgaatcattc agttgatctc tcagtttgaa
      121 atctttggca aaaggcaact cgcaggtgag cgggaatatc aatttgcaat actctcttgc
      181 tagttgccaa atttccaatt cttcaaatcg tgtgatggtt gccatgtgtg agtgagttta
      241 tgtctaagaa ctaaaaacca aaaacaaaaa accaaaaact aaaaatgcca gccagccagt
      301 gcaattacag ttacgagtaa aagattgaac atactgatgg gtaacaaata cttccattcc
      361 aaattcaaaa gctgatcgat tcgaaggcgc gggaaagtcc aacgaaacca catgatcacg
      421 aaaatgagga agaaggtttt accgaagaac catacggatg atggtatcca gtccatgatg
      481 ttgttgaact gcgtccagtt gccgatatgg aatggcatcc agccgccgag gaagagggta
      541 gcgccaatgg cacacaccac aaagatgttg acgtattcag cgaggaagaa caaggcgaac
      601 ttcatgccgg agtattcggt atggaagccg gcagtgagtt cactttccgc ttcggccatg
      661 tcgaagggtg cccggttggt ttcggcagtg gcggcaatga tgaaaatgac aaaggcgata
      721 atggcaggaa tatgtccctt gaacaaccac cagcctgttt gctgtgcttc cacaatggcc
      781 gacattttca aactgccggt gagcactacg atggtcagaa tggaaagccc tgccgataat
      841 tcataactca cgatttgtgc gccactgcgc atggcaccca gcaaagagta tttgttgttg
      901 ctggcccagc ctgccatcag gatgccgata atagacaaag aggaaacggc agctacaaac
      961 aacacgccaa tgttcacatc ccagatctgt atgcctttgg caaacatgag cggcgccatg
     1021 atgaccatgg atacgatgat caccaatacc ggggcaatgt taaagagcag tcgatctacg
     1081 ttgttaggtg tcatgccttc tttcacgatc agcttgacag tatctgccac ggtttgaaac
     1141 cagccgccag ggcctatgcg gttgggaccc aaacgcaatt gcatccacga gctcactttg
     1201 cgttccatca ttaccagcac caggcccagc actgcaaaca gcgcaatgat gagcacgcct
     1261 acaattgcaa actcaatgat cagcgccagt gtaggatgca tgttgctgta cagccattca
     1321 tggatccagc tcgctatttg ttcgaatgat atcatatgta acccccaacc ccctaaaggg
     1381 ggctttaagt tgtttaatta atgcttagtg ttctttatga tcatgttcat ctgatccatt
     1441 tgttcatgtt gtgtctcctc catattcccc ctttaggggg atagggggtt gttcacctgt
     1501 caatatccgg tatcaccaag tccagtgtgc ccatcatggc tacgaggtcg ccgatctttt
     1561 gaccacgggc catgtgatcg agtgcactca ggttgctgaa gcccggtgaa cggaatttga
     1621 tacggtaagg tgtagtgccc ccttcgctca cgatgtacac gccgagttcg ccgcggggtg
     1681 tctccacctt tgagtagaat tctcctttgg gcagtttcag taccgctttt gtcttggcct
     1741 ggaaatcgcc ttctggtatg ttgtctatca gttgatcgat gatgctgatg gattcacgca
     1801 gttcagccag gcgaacgagg tagcgggcat agctgtcgcc ttcagtcaac acgatttcat
     1861 tgaactgcaa cttgtcgtac acttcataag ggaagtgctt gcgcacatcg cagcttacgc
     1921 cactgccacg ggcagtagga ccggtgcaac cgtaggagat ggcgtcttct ttgctcagca
     1981 cgcctacgcc tttcatgcgg ttctggaaaa tgatattgct agtcaccagt tcgtcgtatt
     2041 cgtcgatctt ggttttgaag tgagcgatga aatccttcac gcttttccgg aagttgggat
     2101 gcaggtcaaa catcacgccg ccgggcacca tgtagttcat ggtaagccgg gcaccacagg
     2161 tttcttccat gatgctgttg atcatttctc tttcgcgaaa agcgagaaag aagggcgtta
     2221 cagcgccgca gtccatagcc accgaacccc a
//
LOCUS       DATIQF010000503         8340 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_251455,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000503 DATIQF010000000
VERSION     DATIQF010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8340
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251455"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..416)
                     /gene="yajC"
                     /locus_tag="VLL95_08305"
     CDS             complement(75..416)
                     /gene="yajC"
                     /locus_tag="VLL95_08305"
                     /inference="COORDINATES: protein motif:HMM:TIGR00739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HSR38902.1"
                     /translation="MNQFFMLLAAQPGGKSGGFEFIFLGLMILVFWLFMIRPQAKKAK
                     EQKKFVENMQKGDKIVTIAGIHGVIHKVNEDGTIQLEISPGSYLKIEKSAVSMEWTAN
                     VNKAAAAPAAK"
     gene            complement(496..993)
                     /locus_tag="VLL95_08310"
     CDS             complement(496..993)
                     /locus_tag="VLL95_08310"
                     /inference="COORDINATES: protein motif:HMM:NF019242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1573 domain-containing protein"
                     /protein_id="HSR38903.1"
                     /translation="MRAFTIAVLAATLLASACIDDAADKPTGSAEGAAAASADVTTDS
                     ANFTSIQWIDSIRNMGSIREGQKLEVTFRFKNIGSKPLVIQSATPSCGCTVPEKPEKP
                     VMPGEESMIKAVFDSQGRQGTNHKTINVVANTKGTTNHSLEFNVEVVGEKEGPKATSG
                     SPSQF"
     gene            complement(1057..2031)
                     /gene="nusB"
                     /locus_tag="VLL95_08315"
     CDS             complement(1057..2031)
                     /gene="nusB"
                     /locus_tag="VLL95_08315"
                     /inference="COORDINATES: protein motif:HMM:TIGR01951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HSR38904.1"
                     /translation="MISRRNIRVKVMQCIYALRTGNEIPFPSKLPVPARSAKEVKPVI
                     PKSEVLLRRQFDSTISLFTYQVWFLTEVARYAETDARNKAAKHLPTPEDLNVPVKIAG
                     NEFLWRILESPFFAEATAKYQPQHMQSEEWVKKVYQQLSQTTEYAVYNSAQGREKKSE
                     KEILEFIYNDLMLANEDWVSFVEELYNNWDDDAEMLQLLVLNYLQKPGVLREDDLLGA
                     DKFQFAKNLLDTVEEKKDFLDELIKPKLRNWDSDRLAQLDLILLQMGVAEFLYFETIP
                     PKVTINEYIDIAKAYSTNQSGQFVNGILDNIRKDLEDAGKIQKVAFKK"
     gene            complement(2194..4473)
                     /locus_tag="VLL95_08320"
     CDS             complement(2194..4473)
                     /locus_tag="VLL95_08320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38905.1"
                     /translation="MTGSVTHVMVSPSVANRVYFGTSNGLVYRVNDAHTGATKTGQVI
                     FNQGVSGSVSCIAVDPANEEHLLVTFSNYGVNSIWESQNGGGSWTSVEGNFPDMPVRW
                     AIFDPRFSDWAILATEMGVWSTNNLDGSNTKWDPTNSGLANVRVDMLQYSPQTRVLSA
                     ATHGRGLFTSVVPTRAGVEINFPYSKALLNEATASTSDCRKYTDYTIPLQITSAPTGS
                     ALVSVAVQAGGTAYQGADYDFTTNGNFADPSNLIVFENGAAASKNITLRIYDDAELDA
                     GETFTITYTLSGSTNAVKGAGSQTVAVQIGDNDSDPVPPGSTVATIGNYDVSFSQPFR
                     STFTDSKTQMLYTAAEMRNAGLAAGNITRIGFEVVSKGSLGQYESLTIKMANTPLQNM
                     NSVTGFQTGLQTVYSTTFYIVSSGINDFNLQMPFSWDGTSNVIVEFCFDNEALSPSGG
                     GSADIVKATQTGTSNDANPQNMAIWKRENSNSCDGLNSSGDLYAGSVTCTGCTPTFYY
                     RPVIRMAGASASGIAIATAQNTESNVYIGPFSDTYVYNSTGNQILARIKNLTSFNYGC
                     TNVKIDRAGQSAKPFMNNTSTDYIADKTITIAPSNNNANGELEVTLYYTTGEINGWQT
                     VTGRNLGVVQMVKTKNAISGYTQGAVQPSVVEVNISPASGFYGSDRTLKGAFRTGAGG
                     FGIGTFYSTTVFNFIGNGNWSNPANWQSGVVPPNTVSSGFTININPVEGGEAVLDIPL
                     NILPGAVINIANGKKLRVN"
     gene            complement(4470..6245)
                     /locus_tag="VLL95_08325"
     CDS             complement(4470..6245)
                     /locus_tag="VLL95_08325"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HSR38906.1"
                     /translation="MPATKEDGEEAESTGAGEAAAQQFDLTRDPATGQIPVERLVKVK
                     ELRDAIIKTRRLNPLAPVDGITWQERGPNNVGGRSRVAWFDLNDAANGYKKVWAAGVG
                     GGLWYTNDITAASPVWVKINDFFDNIAVSSFAQDPSNPQVMYFGTGEGWFNIDAIVGL
                     GIWKSTNGGATWTKLASTDRFVYVQDIVVNSSGHVYAAVRPRITGDASGIQRSVDGGV
                     NWTQVLGSPVQGNSSRGADLELASNGDMYATIGHGSDGRIFRSANNAHGTNTGNTGSW
                     DDITPDPSLNSFPASTGAAVYERIEVAVAPSNPNIVVALFEGTGSNDVSYIKTFNPTF
                     SAWLDKPVPTIIDQGSNSKFTRGQAWYDLIAAIDPNNDNRIWIGGVDGLRSDNQASTW
                     DQKTTWSLFGAAGYGTGQNVHADHHEYKFAPGSSSRMLMATDGGMDYSENADFGGIGQ
                     FPSFERKNNGYNVTQFYSVANHPTNADYFIGGTQDNGTHRFNVAGMNNTTRVVGGDGG
                     FCHIDQMSPTFKSLRPQGTITTYLPMEAAALPADPRTTTVDSSIPRITMISAISYIVA
                     ISRAPISGTSVRLQTAPQLQLPSAG"
     gene            6588..6875
                     /locus_tag="VLL95_08330"
     CDS             6588..6875
                     /locus_tag="VLL95_08330"
                     /inference="COORDINATES: protein motif:HMM:NF001533.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HSR38907.1"
                     /translation="MAKDKKLAVTPLHDRVIVKPAPAEEKTAGGIIIPDTAKEKPQRG
                     TVVAAGPGKKDEPVTVKAGDTVLYGKYAGTEISIEGADYLIMRESDILAIV"
     gene            7029..>8340
                     /gene="groL"
                     /locus_tag="VLL95_08335"
     CDS             7029..>8340
                     /gene="groL"
                     /locus_tag="VLL95_08335"
                     /inference="COORDINATES: protein motif:HMM:NF009488.0"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HSR38908.1"
                     /translation="MAKQIFFDIEARNKMKKGVDTLANAVKVTLGPKGRNVVIEKKFG
                     APAVTKDGVTVAKEIELEDAIENMGAQMVKEVASKTADIAGDGTTTATVLAQAIISEG
                     LKMVAAGANPMDLKRGIDKAVSLVVANLKSQSQTVGNDSKKIQQVASISANNDETIGK
                     LIAEAFAKVGKEGVITVEEAKGTDTTVDVVEGMQFDRGYISPYFVTNSEKMEAELQNP
                     YILIYDKKISAMKDILHILEKVAQGGRPLLIISEDLEGEALATLVVNKLRGTLKVAAV
                     KAPGFGDRRKEMLQDIAILTKGIVISEEQGYKLENADLSYLGQASSVTIDKDNTTIVG
                     GKGDKKDITARVNQIKAQIETTTSDYDREKLQERLAKLSGGVAVLYVGAATEVEMKEK
                     KDRVDDALHATRAAVEEGIVPGGGVAYIRALESMDAKVKGQIADE"
BASE COUNT         2076 a         2115 c         2065 g         2084 t
ORIGIN      
        1 tttgaagcag gaaaaacaaa aaccctgaaa acataaagtt agtcagggct cttgctcatt
       61 gtgcgttgca gtaattattt ggcagcaggt gccgcagcag ccttgtttac gttggcagtc
      121 cactccatgc tcacggcaga cttttcaatt ttcaggtagc tgccggggct gatttccagt
      181 tgaatggtac cgtcttcatt cactttgtga ataacaccgt ggataccagc tatggtcacg
      241 atcttatcgc ccttctgcat gttttctaca aacttctttt gctctttggc ttttttagct
      301 tgcggacgga tcatgaataa ccagaacacc aggatcatca atcccaggaa aatgaattcg
      361 aatccaccac tcttgcctcc gggctgtgca gccagcaaca taaaaaactg attcatgtat
      421 tgtcgtattt gatttaaaga ttatggtcct cttatacagg atttattgaa agatcattca
      481 catggaatag ttacatcaga actgggaagg gctgccactg gtggctttgg gtccttcctt
      541 ttctcctact acttccacat taaactccag cgagtggttg gtagtgcctt tggtattggc
      601 caccacatta atggttttgt ggttggtgcc ctggcgcccc tggctatcga acaccgcttt
      661 gatcatgctt tcttcaccgg gcatcacagg tttctcaggc ttttcgggta cggtgcagcc
      721 gcaactgggc gtggcgctct gaatgaccaa cggtttgctg ccaatgttct tgaaacggaa
      781 ggttacttcc agtttttgtc cttcgcgaat gcttcccata ttcctgatgg aatcaatcca
      841 ttgaatgctg gtgaagttgg cgctgtccgt agttacatca gccgaagctg ctgcagcgcc
      901 ttcggcactg ccagttggct tatcggccgc atcatcaata catgcgctgg ccagcaaagt
      961 ggcagcgagc acagcgatgg taaaagctct catggttatc ggttaatgaa ggttatttca
     1021 ggttggcaaa tttcaccttt ctgatgaaat gccattttat tttttgaaag ccactttctg
     1081 gattttgccg gcatcctcca aatccttcct gatgttatcg agtatgccat ttacaaactg
     1141 gccgctctga ttggtactgt aggctttggc aatatcgatg tattcgttga tggtcacttt
     1201 cggggggatg gtttcgaaat acaaaaactc ggctaccccc atttgaagta gtatcaaatc
     1261 caactgtgcc aaccggtctg aatcccagtt gcgcaatttg ggtttgatga gttcatccag
     1321 gaaatccttc ttctcttcta ccgtatcgag gaggtttttg gcaaactgga acttgtcggc
     1381 acccagcaaa tcatcctccc ggagcacgcc cggtttttgc aggtaattca gcaccagcag
     1441 ctgcagcatt tcggcatcat cgtcccagtt gttataaagc tcctccacga acgacaccca
     1501 gtcttcattg gccagcatca ggtcgttgta aatgaattcg agtatttctt tttcgctttt
     1561 cttctccctg ccctgcgcac tgttgtacac cgcgtattca gtggtttgcg aaagctgctg
     1621 gtacactttt ttcacccact cttcgctttg catatgctgg ggctggtatt tggcggtggc
     1681 ttcggcaaaa aaaggcgact ccagtatgcg ccaaaggaat tcattgccgg caattttcac
     1741 gggcacgttc agatcttcgg gcgtaggcaa atgcttggcc gccttattcc gggcatcggt
     1801 ttcggcatag cgggccacct cggtcaaaaa ccagacctgg taggtaaaca atgaaatggt
     1861 gctgtcgaac tggcggcgca acaatacctc tgatttgggg ataacaggtt ttacctcttt
     1921 ggccgaacgg gcaggcaccg gaagtttgga agggaatgga atttcattgc cggtgcgcaa
     1981 agcatagatg cactgcatca ctttcacccg gatgtttcgc ctgctgatca taccgaaaga
     2041 actgttttag ataggccggc aaaggtaagg gcagcaaccc ttgactccaa gccatggccg
     2101 gcaaagcggg gctgtttacc ctgctttaac aaaaaaactg acgcctgatg gcgccagttt
     2161 tcattgctga tcttgttatt gggcacggaa tccttaattg accctcagct ttttgccatt
     2221 ggcaatattg atgaccgcgc cgggcaaaat attgagcggt atgtccagca cagcctcccc
     2281 tccctctacg ggattgatgt tgatggtaaa gcctgaggac accgtattgg gtggcactac
     2341 cccgctttgc cagttggccg ggttgctcca gttgccgttg ccaataaaat tgaatacagt
     2401 ggtggagtag aaggtgccaa tgccaaaacc acccgccccc gttcggaagg cgcccttgag
     2461 ggttctgtct gacccataaa atccgctggc aggcgaaata ttcacttcga ctacagaagg
     2521 ctgcacggca ccttgggtgt agccactgat ggcatttttg gtcttcacca tttgcaccac
     2581 acccaggttg cgccccgtta cggtctgcca cccgttgatt tcaccggtgg tgtagtacag
     2641 ggtcacttcc aattcaccat tggcattgtt gttgctcggg gcaatcgtaa tggttttatc
     2701 agcaatgtaa tcggttgaag tgttgttcat gaacggcttg gccgattgac cagcccggtc
     2761 aattttcaca ttggtgcagc cataattgaa agaagtcagg tttttgattc gggccagtat
     2821 ctggttgcca gtgctgttgt aaacataggt gtcggagaag ggcccgatgt agacattcga
     2881 ctcggtgttt tgagcagtgg caatggcaat gccagaagcc gatgcacctg ccatccggat
     2941 gacaggtcgg tagtagaatg taggagtgca tcctgtacat gttactgaac cagcgtacag
     3001 gtcccctgat gaattaagtc catcacaact attactgttt tctcttttcc aaatagccat
     3061 gttttgcgga ttggcatcat tgcttgtacc agtttgagtc gcctttacga tgtccgcact
     3121 gccaccaccg cttgggctta aggcttcgtt atcaaaacaa aattctacaa taacattact
     3181 ggtaccatcc caactaaatg gcatttgtag gttgaagtca ttgatgcctg aagaaacaat
     3241 atagaatgta gttgaataaa ctgtttgcaa acctgtttgg aagcctgtga cgctattcat
     3301 gttttgaaga ggtgtatttg ccatttttat agtaagactc tcgtattgac ccaatgagcc
     3361 tttagacacc acttcaaacc cgatacgggt aatatttcct gctgcgaggc ccgcattccg
     3421 catctctgca gctgtgtaca acatttgcgt tttggaatca gtaaaagtac ttctaaaggg
     3481 ttggctaaaa gaaacgtcat aatttccaat agtagccact gtagaacccg gaggaacggg
     3541 gtcgctgtca ttatcgccaa tttgcaccgc caccgtttgc gaccccgctc ctttcactgc
     3601 attggtgctt cccgacaatg tataggtgat ggtgaaggtt tcacccgcat caagttccgc
     3661 atcatcgtaa atgcgaaggg tgatattttt tgaagcagca gccccatttt caaacacaat
     3721 aaggttggaa ggatcggcaa aattgccatt ggtggtaaaa tcataatcgg cgccctggta
     3781 ggcggtaccg ccggcctgca cagctactga caccagcgca ctgcccgttg gggcactggt
     3841 tatctgcagc gggatagtgt aatcagtgta tttgcggcaa tcggaagtgc ttgcagtagc
     3901 ttcattcagc agtgctttgc tgtaagggaa attgatctca acacctgccc gggtgggtac
     3961 cacggaagtg aacaatccgc gaccatgcgt agcggcggaa agcaccctgg tttgcgggct
     4021 gtattgcagc atatccaccc gcacattggc cagtccgctg ttggtgggat cccactttgt
     4081 attgctgcca tccaggttgt tggtactcca cacgcccatt tccgttgcca gtatggccca
     4141 atcggaaaaa cggggatcaa atattgccca acgtaccggc atgtcgggaa aattgccttc
     4201 cacgctggtc catgagccgc cgccattctg tgattcccaa atgctgttga caccatagtt
     4261 gctgaacgta acgagcaggt gctcttcatt ggctgggtct acagctatgc atgacacaga
     4321 accactgaca ccctggttga aaatgacctg gccggttttg gtagcaccgg tatgcgcatc
     4381 attaacccgg tataccaatc cgttgcttgt tccaaaatat accctgttcg ccactgaagg
     4441 agaaaccatc acatgggtaa ccgaacctgt catcccgctg atggtaactg aagttgtggc
     4501 gccgtctgta gccggactga tgtaccggaa ataggtgccc gcgatattgc cacaatatag
     4561 gatattgctg atatcatcgt aatccgtggg attgatgaat ccaccgttgt tgttcttgga
     4621 tcggctggca aagctgctgc ctccattggt agatatgtgg taattgttcc ttgtggtcga
     4681 agcgatttga atgttgggct catttggtcg atgtgacaaa atccaccgtc accgcctacc
     4741 acacgggtgg tattgttcat accggccacg ttgaacctgt gcgtgccatt atcctgcgtg
     4801 cctccaataa aataatctgc attggtagga tggttggcaa ccgaataaaa ctgggttacg
     4861 ttgtaaccat tgttcttccg ctcgaaggaa ggaaattgac cgatgcctcc aaagtcagca
     4921 ttctcggaat aatccattcc accgtccgtt gccatcagca ttcgcgaact gcttccgggt
     4981 gcaaatttgt attcgtggtg atcggcatgt acgttttgac cggttccgta gccagccgcg
     5041 ccaaacagac tccaggtagt tttctggtcc caggtactag cctggttgtc agagcgcagg
     5101 ccatccaccc cgccaatcca gatgcggttg tcgttgttgg gatcaatggc agcaataagg
     5161 tcgtaccagg cctgccccct ggtgaatttt gaattggaac cctggtcgat gatggtgggt
     5221 acaggcttat ctaaccaggc cgaaaaggta ggattaaagg ttttgatata agatacatcg
     5281 ttactgcctg ttccttcaaa tagagcaacc acaatgttag gattgctggg ggccacggcc
     5341 acttctattc gttcgtaaac ggctgcgcca gtggatgcgg gaaatgaatt caaagagggg
     5401 tcgggcgtaa tatcatccca ggaaccggtg ttaccggtgt tagtgccatg tgcattattg
     5461 gcgctgcgga aaatccggcc atcactgcca tgcccaatag tagcatacat atcgccattg
     5521 ctcgccaatt ccaggtcggc accacggctg ctgtttccct gcaccgggct tcccaacacc
     5581 tgtgtccagt tcacaccgcc atccaccgaa cgctgaatgc cactggcatc gccggtgatg
     5641 cgaggcctca cagccgcata aacatgcccg ctgctattca ccacaatgtc ctgcacatac
     5701 acaaacctgt cggtggaagc aagtttggtc caggtggctc caccattcgt cgatttccag
     5761 atacccaaac caacaatggc atcaatattg aaccagccct cgccggtacc gaaatacatc
     5821 acctgtggat tggaggggtc ttgtgcaaaa ctggaaacgg cgatgttgtc gaaaaagtcg
     5881 ttgatcttga cccacacagg actggctgca gtaatatcat tggtatacca gaggccgccg
     5941 cctacacctg ccgcccaaac ttttttgtag ccattggccg catcgttcag gtcgaaccag
     6001 gccacccgcg aacggccgcc tacattatta ggtccacgct cctgccaggt aatgccatcc
     6061 accggggcca ggggattcag ccgcctggtt tttatgatgg catctcgcaa ttccttcacc
     6121 tttaccaggc gttctacagg aatttgcccg gtagccgggt cacgggtaag atcaaactgt
     6181 tgggcagcgg cctcaccggc acctgttgat tctgcctcct cgccatcctc ctttgtggca
     6241 ggcacatcca actgttgctt ttccgaaaaa gctgactcca gggcagacag gctgcaaaat
     6301 gttgtgaggc ccaaaatggc tagggccggg aaaaatctgg ctattctcat cacttcctta
     6361 tcgtaagggt atcaagtaca accaacatga ttagcaattg tttggggtgg gtgtcttttt
     6421 gtcaatcggg ctgtaaaaat gtaccaccaa tcatgaggga ttgacaataa tactgactga
     6481 tatctgaaaa aatgactttc tgccacaatt tcatggcaga tggcacaatt atggattccc
     6541 ctgctgcgaa atccatattt cattttaaaa actaaaacat acgttttatg gcgaaagaca
     6601 aaaaactggc tgttaccccc ctgcacgacc gggtaattgt gaagcctgcc cctgctgaag
     6661 agaaaaccgc tggtggtatc atcatccccg acactgccaa agagaagccc cagcgtggca
     6721 ccgttgtagc tgccggacct ggcaaaaagg acgagcccgt aactgtaaaa gccggcgaca
     6781 ctgttttgta tggcaaatat gctggcaccg agatcagcat cgaaggcgcc gactacctca
     6841 tcatgcgtga aagcgatata ctcgctattg tttaataagt catgcctgga aacgggaaat
     6901 aaggcaaagg cttgctgcct ttgttttgcc cagcagcctt acagcatgta gaagagtgcg
     6961 actcaacaga atccaaaaac tgttgccatc gccgaaaacc taaaacaaaa aacttcaaac
     7021 aattacatat ggccaagcaa atattcttcg atatcgaagc ccgcaacaaa atgaaaaagg
     7081 gcgtagatac cctggcaaat gccgtgaaag tgaccctcgg ccccaagggc cgcaacgtgg
     7141 taatcgaaaa gaaattcggt gcccctgcag taaccaagga cggtgtaacc gttgctaagg
     7201 aaattgaact ggaagacgcc attgaaaaca tgggcgccca gatggtgaaa gaagtagcca
     7261 gcaaaactgc tgacatcgcc ggcgacggta ccactaccgc cactgtgctg gcgcaagcca
     7321 tcatcagcga aggcctgaaa atggtagccg ccggtgccaa tcccatggac ctgaagcgtg
     7381 gcatcgacaa ggccgtaagc ctggtagtag ccaacctgaa gagccagagc caaaccgtag
     7441 gcaacgacag caagaagatc cagcaggtgg cctctatttc tgccaacaac gacgaaacca
     7501 tcggtaaact gattgccgaa gcttttgcca aagtgggcaa agaaggtgtg atcaccgtag
     7561 aagaagccaa aggcaccgac actaccgttg acgtagtaga aggcatgcag ttcgaccgcg
     7621 gatacatcag cccctacttc gtgaccaaca gcgaaaagat ggaagctgaa ctgcagaatc
     7681 cttacatcct gatctacgac aagaagatca gcgccatgaa ggacatcctg cacatcctgg
     7741 aaaaagttgc ccagggtggc cgtccgctgc tcatcatcag cgaagacctc gaaggcgaag
     7801 cactggctac cctcgtggta aacaaactgc gtggcaccct gaaagtggct gctgtaaaag
     7861 ctcctggctt tggcgaccgc cgcaaggaaa tgctgcagga tatcgctatc ctcaccaagg
     7921 gtattgtgat cagcgaagag caaggctaca agctggaaaa tgctgacctc agctacctgg
     7981 gccaggccag cagcgtaacc atcgacaaag acaataccac tatcgtaggt ggcaaaggcg
     8041 acaagaagga cattactgcc cgtgtaaacc agatcaaggc tcagattgaa actaccactt
     8101 ctgactacga ccgtgagaag ctccaggagc gcctggctaa gctgagcggc ggtgtggctg
     8161 tactgtatgt aggtgccgct actgaagtag aaatgaagga aaagaaagac cgcgtagatg
     8221 atgccctgca tgctacccgt gctgccgtag aagaaggcat cgtgcctggt ggtggtgtgg
     8281 cttacatccg tgccctcgaa agcatggatg ccaaagtaaa aggccagatc gccgacgagc
//
LOCUS       DATIQF010000504        10379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_190778,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000504 DATIQF010000000
VERSION     DATIQF010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 10379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10379
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190778"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..755)
                     /locus_tag="VLL95_08340"
     CDS             complement(<1..755)
                     /locus_tag="VLL95_08340"
                     /inference="COORDINATES: protein motif:HMM:NF019042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HSR38909.1"
                     /translation="MKKLTACCCFAILTFGAIAQVQRQTDTTYYKALISADRVKLLQN
                     MDVIANMQFAMNNYFTDGKYDKSTYTMNQFRFEMKGKVHEKVYYRFRNRYTRAQDPQS
                     IDKISNSVDMAFIRVDATPKWNFTFGKMCADWGGYEFDLNPIDIYEYNDIVEYADNFL
                     SGIQAQFVATNQHIFTAQILNSRTKTYKELYDSIPGVTEARFPAALVLNWRGNFGNGK
                     FTTLWSYSRFIEAKNKSMFYLALGNMYNFKKGS"
     gene            complement(785..2128)
                     /locus_tag="VLL95_08345"
     CDS             complement(785..2128)
                     /locus_tag="VLL95_08345"
                     /inference="COORDINATES: protein motif:HMM:NF009136.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HSR38910.1"
                     /translation="MIWLQFAVLLVMILIGSRLKGIGLGLMGVLGMFIYVQFFRMRPV
                     GPPGDIMLIILSIVTASAALQAAGGLDYLVHIAEKIIRRNPKQITLIAPLSAFVLCLF
                     SGTSHVVYSLLPVISDLSAKKGIRPERPLSATVIASHMALTGSPMAACTAALVTVLAH
                     PSAPMDIMKVSIPACLIGTIAAALVMFRKGKELKDDPVFQEKLQDPAFVAYLKSEETT
                     EKKEISKDAKLSVVIFGLAILMIVLGGSFPEMVPNMVEGNANTMVNADGSLKMVTIIS
                     IVSLSAAALIMLFTRAKPGQIVKSSLFLSMATALVSVYGVVWMSATFMAANEEAIKQG
                     LGSLTASYPWVFTIAVFIMGILMFSQGATTKAMMPLGLTLGLPAGSLIAMFPAVSSFF
                     FLPGYPTLLAAISMDKTESTKIGKYVVNHSFMLPGLVATVVSILTGFLLVKMYGL"
     gene            complement(2150..3199)
                     /locus_tag="VLL95_08350"
     CDS             complement(2150..3199)
                     /locus_tag="VLL95_08350"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004067 - asparaginase activity [Evidence
                     IEA];
                     GO_process: GO:0006528 - asparagine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HSR38911.1"
                     /translation="MKKLIAFLSMMIMLAGLQAQQLPRIIILATGGTIAGKGASADRA
                     GYTAGKIPIEDLIGAIPQVKKVANISGEQISSIGSQDMTIEIWKKLAVRANEIFDKNE
                     ADGIVITHGTDTQEETAYFLDLLISSEKPVVLTGSMRPATAISADGPKNLYDAITVAA
                     NPKSNGKGVMVSFNEGIFDGRDVMKLSTTKVNAFASPNTGPIGQVYDGKVEFYQASMR
                     EVNVKTPFKVSLDTKLPRVDIVYMYADAPADMIDMLVAKKADGIVIAGVGNGNFNKAY
                     MDAVKRAVAAGIVVCRASRTPSGRVVLEDEINDAVLGTIVSDDLTPQKARILLMLGLT
                     NTKDKKQLQKYFFTY"
     gene            complement(3218..4630)
                     /gene="aspA"
                     /locus_tag="VLL95_08355"
     CDS             complement(3218..4630)
                     /gene="aspA"
                     /locus_tag="VLL95_08355"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF008909.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008797 - aspartate ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HSR38912.1"
                     /translation="MSTTFRTEHDFLGEKEVSNNCYYGIQTLRAKDNFDITGIPLSTE
                     PTFIKAFGYVKKAAALANHECGVLSKEITEAICYACDRLIAGEFTDQFVSDLIQGGAG
                     TSCNMNVNEVIANIGLEKMGHKKGEYQHLHPNNHVNCSQSTNDAYPTAFRMALYMKID
                     AFTKAMEVLQQSFYKKGQEFSGILKMGRTQLQDAVPMTLGQEFNAFATTIGEDVLRMS
                     EVQKLITEVNMGATAIGTGVNAPEGYAVKCVEQLQKISGIPVVLAADLIEATYDTGAY
                     VQLSGTLKRCAVKLSKICNDLRLLSSGPRCGLNEINLPPMQPGSSIMPGKVNPVIPEA
                     MNQTCFYVIGADLTVTLAAEAGQLQLNVMEPVIGFSLFTSLQYLTNACYMFQEKCVDG
                     ITANPERTREMVMQSIGIVTQLNPIIGYEASASMAREALTSGKSIHQLAVVERKLITQ
                     EKWDEIYSIENLINPKFINQ"
     gene            5138..5335
                     /locus_tag="VLL95_08360"
     CDS             5138..5335
                     /locus_tag="VLL95_08360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38913.1"
                     /translation="MKKKFESDFLVIGSGFSASGGLPFCSFHNAMLQRHFACCKLILT
                     GFDDAKPVGWQLKALPHKDLD"
     gene            5428..6894
                     /locus_tag="VLL95_08365"
     CDS             5428..6894
                     /locus_tag="VLL95_08365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38914.1"
                     /translation="MKRNSAREDLKIVRLFDALDKMQEYDEKQLLKKLPDVEKPQLAN
                     LKTHLYKQLMASMRDLKSKDSVELQLNEMLDYGRILYNKGLFAQSLKFLDKAKEICFA
                     HGKYNFLSQVISLEKKIEGLYITRSMQEKAEQLATEALDVSNHIYQVFRLSNLAVRLY
                     SFYVENGHARNEEEEKKVKEFFEANLPANAQSFTGFYERLYLYQSYCWYSFIRQDFLM
                     YYRYSQKWVNLFTNEPVRIKVETGHYIKGLHNLLNAHFDLRNFKAFENVLNDFESFYK
                     SDLCQQHDNFRIHSFIYITGARLNWHLMTGTFKEGLQQVPIIEENIRKNEQHLDKHRI
                     LVFNYKIASMHFGYGNFNACIDYLQKIIHEPTDLRYDLQCYARLMHLLAHFELGNDMI
                     MESLTRSVYRFMAKMKNLTAVEEAIISFLRKSQNISSRQMKPELVKLLDQVKVLEKNR
                     HQTRSFAYLDIVSYLEGKVKGKPMSVILSEKHKKSKHC"
     gene            complement(6915..7466)
                     /locus_tag="VLL95_08370"
     CDS             complement(6915..7466)
                     /locus_tag="VLL95_08370"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HSR38915.1"
                     /translation="MRWFWNWYLKKNHWKIEGDFPFHIKKLVIIVAPHTHWKDFIVGV
                     AVRSTMKFNHVKFLGKQELFKPPFGFIFRWLGGTPVDRSSSNNLVEAVVKRFNESEEL
                     VIALSPEGTRKRVDKLRTGFYHIARQAHVPIMMTALDFGNRKVVFSEPFYTSDNEAAD
                     FEKIISFFRSVKGKVPEQGLMHF"
     gene            complement(7551..7632)
                     /locus_tag="VLL95_08375"
     tRNA            complement(7551..7632)
                     /locus_tag="VLL95_08375"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7596..7598),aa:Leu,seq:tag)
     gene            complement(7793..9016)
                     /gene="mqnC"
                     /locus_tag="VLL95_08380"
     CDS             complement(7793..9016)
                     /gene="mqnC"
                     /locus_tag="VLL95_08380"
                     /EC_number="1.21.98.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR03699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic dehypoxanthinyl futalosine synthase"
                     /protein_id="HSR38916.1"
                     /translation="MLGSYRLYKWQAFAYFCGHADATVRLQQLFTDYMELNNLYEKAL
                     RSEFLTIEEGMFLFEQAPLTDLMAVADTLRRQKVPHGKVTWQIDRNVNTTNVCIANCK
                     FCNFYRIPGHAEAYITDMDTYRKKIRETIKWGGDQLLLQGGHHPELGLQFYVDTFKAI
                     KAEFPDIRLHTLGPPEVAHITKLEKSTHAEVLKALKEAGMDSLPGAGAEILVDRVRRL
                     ISKGKCGAQEWLDVMHEAHKLNLPTSATMMFGHVETLRERFEHLEKIRAVQAKKPEGT
                     YGFTAFVPWTFQDADTLLARIRGVHNLTTSEEYVRMIAISRIFLPNITNIQASWLTVG
                     KAVAQMSLYAGANDFGSIMLEENVVSAAGAPHRFTYKSIQEAIREAGFEPQLRNQVYE
                     WRKMPEVIEEQVIDY"
     gene            9034..10269
                     /locus_tag="VLL95_08385"
     CDS             9034..10269
                     /locus_tag="VLL95_08385"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HSR38917.1"
                     /translation="MSFNCNAINMPFAARPIRKYLMLLLALGMALPGVAQEIVSGGPA
                     KLITKFAFEQLTGGVVIVRGTFDKYPDSLNFIFDTGSGGISLDSTTARHLQLVLTPSD
                     RTIRGIAGIKNVEYARNHTLNLPGLSVPGLDFHINDYELLTGVYGVKIDGIIGYSFLR
                     RYLVAIDYDKKILSVYTPGDFKYPRGGYLLRPLIAGLPIQFAHVGDNRGVGSRFYLDT
                     GAGLNLLLSNEFVGDSSLFTPKKNRYPTVAEGLGGKKEMEMAVLKTFKLGTYKFKRVP
                     IYLFDDEYNVTSYPQLGGLIGNDILRRFNVVINYPRSEIHLLPNSHFRDQFDYSYTGL
                     GLYAANGIIYITDVLKNSPAEEAGLKVGDILFAVDNNLSNSMQAYRNILMQSGRKVKL
                     LVKRENEYIQTVMKIENIK"
BASE COUNT         2544 a         2493 c         2556 g         2786 t
ORIGIN      
        1 atgcttcctt ttttgaaatt gtacatgtta cccagggcga gataaaacat gcttttgttt
       61 ttggcttcaa taaaacggct gtaggaccac agcgtggtga atttgccatt tccgaaatta
      121 cccctccagt tcagaaccag tgcggccggg aatcttgcct ctgttacacc cggaatgctg
      181 tcgtataatt ccttgtaggt tttggttctt gaattgagta tctgggcggt gaaaatatgc
      241 tgattggtag cgacaaactg tgcttgtatc cccgataaaa agttgtcggc atattccaca
      301 atgtcattgt attcgtatat gtcaatgggg ttaagatcga attcgtaacc accccagtcg
      361 gcgcacattt tgccaaaggt gaaattccat ttgggagttg catccaccct gatgaatgcc
      421 atgtcgacgg agttgctgat cttatcaatg gattgaggat cctgcgccct ggtataacgg
      481 tttctgaagc ggtagtacac tttttcgtgc acctttcctt tcatctcaaa cctgaactgg
      541 ttcatggtgt aggtgctttt gtcgtacttg ccgtctgtga aatagttgtt catggcgaat
      601 tgcatgttgg caatcacatc catgttctgc agcagtttca ccctgtcggc tgaaatcaaa
      661 gctttgtagt aagtagtatc tgtttgtctt tgcacttgcg caatggcacc aaaggttagt
      721 atcgcaaagc agcagcaggc agtcagcttt ttcatgataa ttgttttggg tgaaaatctt
      781 gcacttacaa tccgtacatt tttaccaata gaaatccggt taatatagaa acaacggttg
      841 ccaccaggcc ggggagcatg aaactatgat tgacgacgta cttgcctatt ttggttgatt
      901 cagttttgtc catggagatg gctgccagca acgtaggata cccgggcaaa aagaaaaagc
      961 tgctcacggc gggaaacatg gcaatcagcg atccggcagg cagccccagc gttaatccca
     1021 gtggcatcat ggccttggta gtggcgccct ggctgaacat gagtataccc atgatgaata
     1081 cagcgatggt gaatacccat gggtaggaag ctgtcaaaga acccagccct tgcttgatgg
     1141 cctcttcatt ggctgccata aaggtggcac tcatccagac cacgccgtac accgatacca
     1201 atgcggtggc cattgacagg aaaaggctgc ttttcacgat ctggcccggc tttgccctgg
     1261 tgaacaacat gatgagggcc gcggctgata atgacacgat ggatatgatc gttaccattt
     1321 tgagtgagcc gtcggcattc accattgtat tggcattgcc ttccaccatg ttgggcacca
     1381 tttcaggaaa agaaccgccc agcacgatca tcagaatggc caggccaaaa atgacgacag
     1441 agagtttggc gtctttggaa atttctttct tttcagttgt ttcctccgat ttaaggtagg
     1501 ccacaaaagc agggtcctga agtttttcct ggaacacggg atcgtccttc agttcttttc
     1561 cttttctgaa cattaccagt gctgcggcaa tggtaccaat gaggcaggcc ggtatgctca
     1621 ctttcatgat gtccataggc gcactgggat gcgccagcac ggttaccagt gcggcagtgc
     1681 aggcagccat aggactgccg gtaagcgcca tgtgtgaagc gatcacggta gcgctcagtg
     1741 gccgctcagg ccgaatgcct tttttggctg acagatcgct gatcaccggc aacaaagaat
     1801 acaccacgtg tgaggtgcct gaaaacaggc acaacacaaa ggcgctcaat ggcgcaatca
     1861 gtgttatctg tttagggttc ctgcgaatga tcttttcagc aatgtgcacc aggtaatcca
     1921 atccacctgc ggcctgcaag gcagccgacg ctgtaacaat gctgaggatg atgagcatga
     1981 tatcgccggg agggcccacg ggtcgcatgc ggaaaaactg cacgtaaatg aacatgccca
     2041 gcacccccat caggccaagg ccgatgcctt tcagccttga accgataagg atcatgacga
     2101 gcagcactgc aaattgtagc cagatcataa tgtgtttatt gaacttgaat caataggtga
     2161 agaagtattt ctgcaattgc ttcttgtctt tggtattggt gagtccaagc atcagcaaaa
     2221 tcctggcttt ttgaggagta aggtcgtcag aaacgatggt gcccagtacc gcatcgttta
     2281 tttcatcttc cagcaccact cttcctgaag gggtgcggct ggcacgacag actacaatgc
     2341 ctgcggcaac agctcttttt actgcatcca tgtaggcctt gttgaaattg ccatttccca
     2401 caccggcaat cacaatgcca tctgcttttt tcgctaccag catgtcaatc atatcggcgg
     2461 gagcatcggc atacatgtac acaatgtcta ctctcggaag tttggtgtca aggcttacct
     2521 tgaacggggt ttttacattc acttcccgca tgctggcctg gtaaaattca actttcccat
     2581 catatacttg tccaatagga ccggtattgg gtgaagcgaa tgcattcact ttggtggtgc
     2641 tcagcttcat cacatcgcgg ccgtcaaaaa tgccttcatt aaaacttacc attacgcctt
     2701 tgccattgct tttgggattg gctgctaccg taatggcatc atataaattc tttgggccat
     2761 cggcactgat ggctgtagca ggacgcatcg aaccagtgag cacaacaggc ttttcggagg
     2821 aaatcagcag gtcaaggaaa taggcagttt cctcctgcgt gtcggtgccg tgggtgatca
     2881 caattccatc cgcttcattc ttatcgaaaa tttcattggc acgtactgcc agttttttcc
     2941 agatctcgat ggtcatgtcc tggctgccta tcgaagaaat ttgttcaccg ctgatattgg
     3001 ccaccttttt tacctgcggt atagcgccaa tcaaatcttc aattgggatt ttacctgctg
     3061 tataaccagc cctgtccgca ctggcacctt ttccggcaat cgtaccccct gtggctagaa
     3121 tgattattct tggcaattgc tgagcctgca gcccagccag cattatcatc atgcttaaaa
     3181 atgctatgag ctttttcata tggggttgta ttaatggtta ttgattaatg aattttggat
     3241 ttatcaggtt ttcgatggaa tagatctcat cccatttttc ctgtgtgatc agtttgcgtt
     3301 ccactactgc cagttggtga atgcttttgc ctgaggtcaa agcctccctg gccatgctgg
     3361 cgcttgcttc atagccaata atgggattga gttgggtaac aatgccaatg ctttgcatga
     3421 ccatttcacg ggtacgctca ggattagcgg tgatgccatc cacacatttt tcctgaaaca
     3481 tgtagcatgc attcgtaagg tattggagtg atgtgaacag cgagaaaccg atgaccggtt
     3541 ccatcacgtt caattgcagt tggcctgctt cggcagcaag tgttacagtc aggtcagcgc
     3601 caattacata gaagcaggtt tgattcatcg cctcaggtat cacggggttc accttgccgg
     3661 gcatgatgga ggaaccgggc tgcatggggg gcaggttgat ttcattcaat ccgcaacggg
     3721 gcccgctgct tagcaggcgc aaatcattac agatcttgct cagtttcact gcgcaccgct
     3781 taagcgtgcc actcagttgt acataggcgc cggtgtcgta agtagcttca atcaggtcgg
     3841 ctgccaatac aaccgggata ccgctgattt tttggagttg ctctacacat ttaaccgcat
     3901 atccttccgg agcattcacc cctgtaccga tagccgttgc gcccatgttc acttctgtga
     3961 tcagtttttg cacttcactc atgcgcagta catcttcgcc aatggtagtg gcaaaagcgt
     4021 tgaactcctg tcccaatgtc atgggcacag catcctgcag ttgggtgcga cccattttca
     4081 atatgcctga gaactcctgt ccctttttgt aaaatgattg ttgcaaaact tccatggcct
     4141 tggtgaaggc atcaatcttc atgtacaatg ccattctgaa ggctgtgggg taagcatcgt
     4201 tggtgctttg gctgcaattg acatgattgt tgggatgcag gtgttggtat tcaccttttt
     4261 tatggcccat tttttcaagg cctatgttgg caatcacctc gttcacattc atgttgcagg
     4321 aagtgccggc gccaccttgt atcaggtcgc tcacaaactg atcggtaaac tcgccggcaa
     4381 tcaaacggtc gcaggcataa cagatggctt cagttatttc tttgctgagt actccacatt
     4441 catgattggc aagtgctgct gcctttttca catatccaaa ggccttaatg aaagtgggtt
     4501 ctgttgaaag tggaatacct gtgatatcga agttgtcttt ggcgcgaagg gtttgaatgc
     4561 catagtaaca attgttggaa acttcttttt caccgaggaa atcatgctcg gtacggaatg
     4621 tggtggacat aaggtttatt ttgagtggca taaggtacga aatgggcttt tgtaatccta
     4681 tgattttcat tacaaaaaca gggcagcacc tgcccaattg cacaaccgaa gttgctattg
     4741 cttcttcctc ttttaccgtt acaaacgttg gagcaaatga tggggtgaaa gccatttttt
     4801 tatgtccctt tgccttgctg ctgagttttg gtttcattgc gttgcagcca ggaatgcatg
     4861 ttgtttcgtg caggtgcttt gctgtcatcc tgaaaagcct ggcatcaatg ttgggaaatc
     4921 accgaagcaa attgattgcg gcaggagcct aaagagacaa aggcgatttt gcctttagca
     4981 ttggaccgcg attcattact ggaaaaatgc catgccacgg ttgcaggttg catcatggat
     5041 ggacagaaag gaaagtagat gtgctgctga ccaggcgaag ccatttaaaa tggaaggtcc
     5101 cctgtagaaa caggggacct caacgattgc ttgccatatg aaaaaaaagt tcgagtctga
     5161 ctttttggtg atcggaagtg gcttttcggc ctcaggtggg ttaccttttt gttcctttca
     5221 caatgcaatg ttacagcggc attttgcctg ctgcaagcta attttaaccg gttttgatga
     5281 tgccaaacca gtaggttggc agctgaaagc cttgccacac aaggatttag actaaaacta
     5341 cacatgatgc ccaaccgcca aaccgacgtt ctgtttcagt tgattcacgc tatggaaaag
     5401 gcggaaaagc ggcatttcaa gctctacatg aagcgaaatt ccgcccggga agacctgaaa
     5461 atcgtgcggc tttttgatgc acttgacaag atgcaggagt acgacgaaaa gcagctgctg
     5521 aaaaaattgc cggatgtaga gaagccgcag ttggccaatt tgaaaaccca cctttacaag
     5581 cagctgatgg ccagcatgcg tgacctgaaa agcaaggaca gtgtagaatt gcagttgaac
     5641 gaaatgctgg attatgggcg cattttgtac aacaaaggac tctttgccca aagcctgaag
     5701 tttctggaca aagccaagga aatttgtttt gcgcatggca aatacaattt tctcagccag
     5761 gtgatctctt tagaaaagaa gatcgaaggc ttgtacatca cccgcagcat gcaggaaaag
     5821 gcggaacaac tggctaccga ggccttggat gtgagcaatc acatttacca ggtgtttcgg
     5881 ctgagcaacc tggccgtgcg gttgtacagt ttttacgtgg aaaacggcca tgcccgcaac
     5941 gaggaagaag aaaagaaagt aaaagagttc tttgaggcca acctgccagc caatgcgcaa
     6001 agttttaccg ggttctacga acgattgtac ctctaccaaa gctattgctg gtattcattt
     6061 atccggcagg acttcctgat gtactaccgc tattcgcaga aatgggtaaa cctgtttaca
     6121 aacgagccgg tgcgcatcaa ggtagaaacc ggacattaca tcaaaggttt gcacaacttg
     6181 ctgaatgcgc attttgatct ccggaatttc aaagccttcg aaaatgtact caatgatttc
     6241 gaaagcttct ataagtctga tttgtgtcag cagcatgaca attttcgcat ccattcgttt
     6301 atctatatca caggggcaag gctgaactgg cacctgatga ccggcacttt caaagaaggc
     6361 ttgcagcagg tgcctattat tgaagagaac atccgcaaaa acgaacaaca cctcgacaag
     6421 caccgcatcc ttgtgttcaa ctacaagatt gcctccatgc atttcggcta tggcaatttc
     6481 aacgcctgta tcgattacct gcaaaagatc attcatgagc ctaccgacct tcgctacgat
     6541 ttgcagtgct atgcccgcct gatgcacctg ctggcccatt ttgagttggg caatgacatg
     6601 atcatggaat cgcttacccg ttcggtttac cggttcatgg ccaagatgaa aaacctgacc
     6661 gcggtggaag aagccatcat cagcttcctg cgcaagtcgc agaacatttc ttcccgccag
     6721 atgaaacccg aattggtgaa attgttggac caggtaaagg tgcttgaaaa aaaccgccac
     6781 cagacccggt catttgccta cctggatatt gtaagctacc tggaaggcaa agtgaaggga
     6841 aaacccatga gcgttatcct gagcgaaaaa cacaagaaaa gcaagcattg ctgacggagg
     6901 cctgcagtaa taggtcagaa atgcatgaga ccttgttcag gcacttttcc ttttactgac
     6961 cggaagaagg aaatgatctt ttcgaaatct gctgcttcgt tgtctgaggt gtaaaacggc
     7021 tcggagaaaa cgacttttcg attcccaaag tcaagcgcag tcatcatgat gggtacgtgg
     7081 gcctgccggg caatatggta gaagccggtc cgcaatttgt caacccgttt gcgggtgcct
     7141 tccggcgaaa gcgctattac caactcctcc gattcattga agcgttttac cactgcctcc
     7201 accaggttgt tgctcgaact gcggtccact ggcgtgcccc ccagccatcg gaaaatgaaa
     7261 ccaaatggtg gtttgaacaa ctcttgcttt ccgaggaatt ttacatggtt gaatttcatg
     7321 gtgcttctta ccgccacgcc cacgatgaaa tctttccaat gggtatgcgg tgctacaatg
     7381 atcaccaact tcttgatgtg aaacggaaaa tcgccttcaa ttttccaatg gtttttttta
     7441 aggtaccagt tccagaacca gcgcatgcaa tcgatttaca gagtatccaa atgtaggctt
     7501 tcgcccaacg caaaaagcac caaccatggt tgatgctttt cgtgattttg tccgggcgga
     7561 gggactcgaa cccccatgcc tcgcggcgtc agatcctaag tctgatatgt ctaccaattt
     7621 caccacgccc ggaagtgggc ggcaaaaata ggggaatccc cctaagcttt tttcaagttg
     7681 tacagctgcc ttcaggccct gcattttgcc aggcattccg cttattggcg tgcccgtttt
     7741 ttgcgcattc cgaaggggaa gcgcatagtg ggatgctgct ttcaccccgg ctctaataat
     7801 cgatcacctg ctcttctatc acctcaggca ttttccgcca ttcgtacacc tggttgcgga
     7861 gctgtggttc aaacccggct tcgcggattg cttcctggat ggatttgtag gtgaagcgat
     7921 gcggggcgcc ggcggcactc accacattct cttccagcat gatgctgcca aaatcgttgg
     7981 cgccggcata caggctcatt tgcgccactg ccttgcccac cgtgagccag cttgcctgga
     8041 tgttggtgat gttgggcagg aagatgcggc tgatggcgat catgcgaacg tattcttcgg
     8101 aagtggtaag gttgtgtact cctctaattc ttgccagcaa agtatcagca tcctggaagg
     8161 tccatggaac aaatgctgtg aaaccataag tgccttcggg ctttttggct tgcacggctc
     8221 ttattttttc caggtgttca aaacgctccc gcagggtttc cacgtggcca aacatcatgg
     8281 tggcgctggt gggcaggttc agtttgtgcg cttcgtgcat cacatccagc cattcctggg
     8341 cgccacattt gcctttgctg atgagtcggc gaaccctgtc cacgaggatt tcagcgccgg
     8401 cgccgggcag gctgtccatg cctgcttctt tcagggcttt cagcacttcg gcatgggtgc
     8461 tcttttccag cttggtgatg tgtgccactt ctggtggccc cagcgtatgg aggcggatat
     8521 cgggaaattc cgccttgatg gccttgaagg tatccacata aaactgcagg cccagctccg
     8581 gatggtggcc gccttgcagc agcagttgat cgcctcccca tttgatggtt tcccggattt
     8641 ttttccggta ggtatccatg tcggtgatat acgcttcggc atggccggga atgcggtaga
     8701 aattgcaaaa tttgcaattg gcaatgcaca cattggtggt gttcacgttg cggtctatct
     8761 gccaggtcac ttttccgtgt ggcactttct ggcggcgcag cgtatcggcc acggccatca
     8821 ggtcggtgag cggtgcctgt tcaaacaaaa acatcccttc ttcaatggtc agaaactctg
     8881 agcggagggc tttctcgtaa agattgttta attccatata gtcagtaaac aactgttgca
     8941 gccttactgt tgcatcagcg tgcccgcaaa agtaagcgaa tgcctgccat ttgtacaggc
     9001 ggtaactgcc aagcaacttt cagcaataca tttatgtctt tcaattgtaa tgccatcaat
     9061 atgccatttg ctgcccggcc gataagaaaa tacctgatgc ttttgctggc actgggcatg
     9121 gcattgcccg gtgtcgccca ggaaatcgtg tcgggtgggc ctgccaaact cattacgaag
     9181 ttcgcattcg aacaactgac aggaggggtg gtcattgtgc ggggcacgtt cgacaagtat
     9241 cccgactcct tgaattttat ttttgacacc gggagcggtg gcatttcgct ggacagcacc
     9301 actgcccggc atttgcagct tgtacttaca cccagcgacc gcaccatccg tggcattgcc
     9361 ggcatcaaga atgtggagta tgcccgcaac catacactca acctgccggg attgtcggtt
     9421 cccggcctcg attttcacat caatgactat gaattgctga ccggggttta cggggtgaaa
     9481 attgatggca tcattggtta tagttttttg cggcgttacc tggtggccat cgattacgat
     9541 aaaaagatat tgtcggtgta tacccccggc gatttcaaat atccaagagg cggatacctg
     9601 ttgcgccccc tgattgcagg cctacccatt cagtttgccc atgtgggcga caaccgggga
     9661 gtgggcagcc gcttttacct cgataccggc gctggcctca atttgttgtt gagcaatgaa
     9721 tttgtgggcg acagcagcct ttttactccc aaaaagaacc ggtatccaac cgtagccgaa
     9781 gggctggggg gcaaaaaaga aatggaaatg gccgttttga agacattcaa actgggtaca
     9841 tacaaattca aaagggtccc tatttacttg ttcgacgacg agtacaacgt gacatcatac
     9901 ccccagctgg gcggcctgat cgggaacgat attttgcgcc gcttcaatgt agtgatcaac
     9961 tatccccgca gcgaaattca cctgctgccc aactcccact ttcgtgatca gttcgattat
    10021 tcctacaccg gactgggttt gtacgcggcc aatgggatca tttacattac cgatgtattg
    10081 aaaaattcgc cagctgaaga ggccgggctc aaagtgggtg atattctttt tgcggtagac
    10141 aacaaccttt ccaacagcat gcaagcctac cgaaacatcc tgatgcaatc aggaagaaag
    10201 gtgaagttgc tggtaaagcg ggagaatgaa tacattcaaa ccgtcatgaa gattgagaac
    10261 attaagtaat tcccgacagc tgaatttatg caaatgagca ctttgatgct gaatgatgcc
    10321 ctttttcagg aagcatgttc ggcgttgtgc gaagcagatc ctgtaatggc aaaaatcgg
//
LOCUS       DATIQF010000505         1944 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_221190,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000505 DATIQF010000000
VERSION     DATIQF010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1944)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1944)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1944
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221190"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..754)
                     /locus_tag="VLL95_08390"
     CDS             complement(<1..754)
                     /locus_tag="VLL95_08390"
                     /inference="COORDINATES: protein motif:HMM:NF025861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 97 N-terminal
                     domain-containing protein"
                     /protein_id="HSR38918.1"
                     /translation="MTQKIGVLLAMVLLACAPLVAQPLLVNSPNGNIQVSFELAPDGS
                     ALYSAAYKGQPVVLKSRLGMLMADGTGFNNQLRIQSSERKQVDETWNPVWGEEKQIRD
                     QHNALRVTLQTNGEKAKTLVVEFRVFNDGFAFRYEWPRQPHLNYFVVKKELTSFALAG
                     DHKTWWIPGDYDTNEFFYTTSKLSEVDASKSAEFTEIGVKVPFSDNGVQTPLMMKSQD
                     GLYINIHEAALVNYPAMQLELDKKTFTLQAHLV"
     gene            complement(816..>1944)
                     /locus_tag="VLL95_08395"
     CDS             complement(816..>1944)
                     /locus_tag="VLL95_08395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38919.1"
                     /translation="VDVLRIDAPAFIWKQLGTTSQNLPEAHTLLRLIKLCVEAATPGM
                     ALLGEAIVAPAEIMKYFGTGSYKAHECDFAYNATHMALQWDALATGDTRVMLAAQHEL
                     LRKPYGTSWITYTRCHDDIGLGYDDYMINAAGYNPYEHRRFLKDYFSGVYEASPAKGA
                     LFGVNPKTQDARISGSLASLCGLERALHDGDAAAVEQSIRKIALMQAHSFFIGGLPMI
                     FYGDEIGSTNDYSYLDDAGKSYDNRWMHRPMIDWSKVNTEDTSSIAGRVYAETKRLIA
                     LRRQLEVVADHSNLEWMTPHNIHVAGYVRHSPERRLYCVFNFSAKDAWLTWYAFREKG
                     LAAAQVKDHYTGTLLPVGSDRSHLIIPAYGFMLLEAVPAFK"
BASE COUNT          456 a          520 c          473 g          495 t
ORIGIN      
        1 gaacgaggtg tgcctgcagc gtaaatgttt ttttgtccaa ctctaattgc atcgcaggat
       61 agttgaccag cgctgcttca tgaatgttga tgtacaagcc atcctggctt ttcatcatca
      121 gcggcgtttg cacaccgttg tcagaaaatg gaaccttcac cccgatctcg gtgaactcag
      181 cagatttgga agcatccact tcactgagtt tggaagtggt atagaaaaac tcatttgtgt
      241 cgtaatcacc ggggatccac caggtcttat gatcgccggc cagtgcaaat gatgtcaatt
      301 cttttttgac aacgaaatag ttgaggtggg gctgtcttgg ccattcatag cgaaacgcaa
      361 aaccatcatt gaaaaccctg aattcaacca ccagtgtttt tgctttttcc ccgttggttt
      421 gcaaggtcac ccgaagcgca ttgtgctggt cgcggatctg tttttcctcg ccccaaacag
      481 gattccacgt ttcgtctacc tgtttgcgtt cgctgctttg tatgcggagt tgattgttaa
      541 atcctgtgcc atcggccatg agcatcccca gccggctttt caataccacg ggttggcctt
      601 tgtacgcagc actgtacaag gcgctgccat caggcgccag ttcaaaactt acctggatgt
      661 tcccattggg agaatttaca agcagtggtt gtgccaccaa tggtgcacag gccagcaata
      721 ccattgccag cagcaccccg attttctgtg tcatacacaa gcatttttag agaggcgaag
      781 caacacaatt agccacagaa aaacgctgtg ctttgtcatt taaaagccgg caccgcttcc
      841 agcaacatga atccgtaggc tggtatgatg agatgcgacc tgtcgctgcc caccggcagt
      901 aaggtgcctg tgtaatgatc ctttacttgt gcagcggcca accccttttc cctgaaagca
      961 taccaggtaa gccaggcatc tttggctgaa aaattgaaca cacaatacaa ccgcctttcg
     1021 ggcgaatggc gaacgtatcc cgccacatga atgttgtggg gtgtcatcca ctcgaggttg
     1081 ctgtgatcag ccaccacttc cagttgcctg cgcaaggcga tgagtctttt ggtttcggca
     1141 tacacacgtc ccgcaatgct gctggtatct tctgtgttga cttttgacca gtcaatcatc
     1201 ggtcggtgca tccagcggtt gtcatagctt ttgccggcat catcgagata agaataatcg
     1261 ttggtgctgc ctatttcatc cccataaaaa atcatgggca agccgccaat gaaaaagctg
     1321 tgtgcctgca tgagtgcaat cttgcggatg gattgctcca ccgccgccgc atcgccgtca
     1381 tgcaaggctc tttccaaacc acacagcgag gccagcgatc cgcttatgcg ggcatcttgt
     1441 gtttttgggt tcacgccaaa caaagcgcct ttggcaggcg atgcctcgta cactcctgag
     1501 aaataatcct tcaggaaccg acgatgttca tacggattgt agcccgccgc attgatcatg
     1561 taatcatcat agcccaatcc aatatcatcg tggcagcggg tataggtgat ccacgaagtg
     1621 ccataaggct tgcgcagcag ttcgtgctgg gcagccagca tcacccgggt gtcgccggtg
     1681 gccagtgcat cccattgcag cgccatgtgc gtggcattgt aggcaaaatc gcattcatgc
     1741 gccttgtaac tgcctgtacc aaaatatttc atgatctcag ccggcgccac tatggcttcg
     1801 cccaataaag ccataccggg tgtggcggct tccacacaca atttgatcag ccgcaacagc
     1861 gtatgcgctt ccggaaggtt ctgactggtg gtacccagtt gcttccaaat aaaggcgggg
     1921 gcatcaatgc gcaacacatc cacg
//
LOCUS       DATIQF010000506         2510 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_281841,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000506 DATIQF010000000
VERSION     DATIQF010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2510
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281841"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            298..1593
                     /locus_tag="VLL95_08400"
     CDS             298..1593
                     /locus_tag="VLL95_08400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HSR38920.1"
                     /translation="MPYKVLTVILLLSTLLFGGEAGMAQNLSYSKSPWKEKEEAMFYA
                     LRSSTAYSDMDPLKELIEKKKYPVDRRLPSGFTPLQAMIYWTAWGERQQKCPEAIRYL
                     ISKGASLTAKTPRLRKNIQPLGPYDNDWINIETPDSLNALQLAVVCGYSDLVKWMLEF
                     DKNTAVRDRYGNGLVHLAALYNYNNRFDEHYVPNLAKMLLLDQNQLNDSSQNALLVYV
                     SRPQWITTAKLVITYMLRAGANPDQRDLSARNFYDYGRTVNPWITRWLEQEKEQARIN
                     EMYRKFRDSPPIDFQKQYEENMARYRAWQKQNSSGCGEQSLPGNMEFRYNYHITSMYG
                     PPRKGSNSTEADEPIVVRIGSSKIEIEPISQYYGSFTICSSGVTSVNGSNYHLYTFKT
                     SSSNSTYQAFGYDPKNPNNAIIMTSNNGVILLSKNPFRF"
     gene            1840..2343
                     /locus_tag="VLL95_08405"
     CDS             1840..2343
                     /locus_tag="VLL95_08405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38921.1"
                     /translation="MQKVSFLLLCLLSFSVIQSQDAKSLLGKWQVVSMGFPDGRVIQK
                     SDWGAIVAEIMKESKNEALSIDNDFSEQDSLAALREATFIMKGMFDAVQEYQPNGVFL
                     YHGWDEKADWAPTVLKGTYTYDPAKKQIITTVKGKSNEYSVSKAGENLKFARPDNSYI
                     LLSKAPE"
BASE COUNT          738 a          583 c          564 g          625 t
ORIGIN      
        1 accaaattcg aaaaatttcc agccacattt caagaggcga caaatttgaa tttcgaaacc
       61 aggtaccagt acacgttctg gtgagtcagc tcttcaacat ttctaatgcc caagccacac
      121 aggcggattt gtaatctgca attcaaactt gcatctttcc ctggttgcaa acacggtgat
      181 acaacttcag gatgccaaat cctgaacagt agtttgcaaa tcgctcagcc tctaataccc
      241 accgccactg atttccagtt ttgattaaag cggtaatttg gtgaaaaaag aatgcctatg
      301 ccctacaagg ttctcacagt gatcttattg ctgtcaaccc tcctgtttgg gggtgaagca
      361 ggaatggcgc aaaatttgag ttacagtaaa agtccatgga aggaaaaaga ggaagccatg
      421 ttttacgcct tacgcagttc tactgcctat tctgatatgg atcccctgaa agaactcatt
      481 gagaagaaaa aatacccggt ggatcggcgc ctcccttccg gattcacccc tttacaggcg
      541 atgatttatt ggacagcatg gggtgaacgc cagcaaaaat gtccggaggc gattcgctac
      601 ctcatcagca aaggggccag tttgacggct aaaacacctc gcttacgcaa aaacatacaa
      661 cccttgggcc cctatgacaa cgactggatc aacatagaaa cgccggacag cctgaatgct
      721 ttgcaattgg ccgtcgtatg cgggtatagc gacttagtga aatggatgtt ggagtttgat
      781 aagaatacag ccgttcgtga tcgctacgga aatggcttgg tgcatttggc ggcattgtat
      841 aattacaaca acaggttcga tgagcactac gtacccaacc tggccaaaat gctgctgttg
      901 gatcaaaatc aattgaatga ttccagtcag aatgccttgt tggtgtatgt gagccggcct
      961 caatggatca ctactgccaa acttgtcatt acctatatgc ttcgtgccgg tgccaatccg
     1021 gatcaacgcg acctatcagc ccgcaatttt tatgactatg ggcgcacagt gaacccctgg
     1081 attacccgct ggctggaaca agaaaaggaa caggcccgca tcaacgagat gtaccggaag
     1141 tttcgggatt cccctcccat cgactttcaa aaacaatacg aggaaaacat ggcgcgttac
     1201 cgggcatggc aaaagcaaaa tagcagcgga tgcggagagc aatccctacc ggggaatatg
     1261 gaattccgat acaactacca tatcaccagc atgtatggcc cgccccgcaa aggcagtaac
     1321 agcaccgaag cggatgagcc catcgttgtt cgtataggat cttccaaaat tgaaattgag
     1381 cctattagtc aatactacgg gtcattcacc atttgtagca gcggtgttac atccgtcaac
     1441 gggagcaact atcacttgta cacgttcaaa acctcgtcca gcaacagcac ctatcaggct
     1501 ttcggttatg atcccaaaaa tcccaataac gccatcataa tgacatccaa taacggcgtg
     1561 attcttttaa gtaagaaccc gtttcgattc taattggtga caggatggaa acttgacctc
     1621 gctttcgata tctcccccgc tcttcgccaa ttgtgatgtc gaagcctgtc tcagggtttt
     1681 taatccgcaa tacaaacctg cacgttttgc ggcatgcaat cccgcagata tggggttatg
     1741 attaaaaatg ctgtacaagg ggggacggga agaagtgcac acaaatagtg ttgaaataat
     1801 tttatattta atgatctctt caaacccaac tcttaccgca tgcaaaaagt atcgttctta
     1861 ttactgtgcc tcctttcatt ttcagttatc cagtcacaag atgccaaaag ccttttggga
     1921 aagtggcagg tggttagtat gggcttccct gatgggagag tgattcaaaa atcagactgg
     1981 ggagctattg tggcagaaat catgaaagag tctaaaaatg aggcattgag tattgacaat
     2041 gacttttctg agcaagattc gttggctgcg ctgagagaag ccactttcat catgaaaggc
     2101 atgtttgatg ccgtgcagga gtatcagccc aacggggtgt ttctctacca cggctgggat
     2161 gaaaaagcag actgggcacc cactgtgctt aaaggaacct atacttatga tcccgccaaa
     2221 aaacaaatca tcactactgt gaagggaaaa agcaatgaat attcagtttc aaaagcgggt
     2281 gaaaatttaa aattcgcaag acccgacaac agttatatcc ttctttcaaa ggcgccggaa
     2341 tagcattatc cagggagtca tttgttcatt gcaaagcatg attgcatgaa gtggcagcat
     2401 atgcaaaggt gacagcacta ttgcctgcgg gcaacatatt taccaaaacc aattattcgt
     2461 cacctgactg ctattcgcca attgcaatgg cgaaggcgta tcgaatggtt
//
LOCUS       DATIQF010000507         1724 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_23711, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000507 DATIQF010000000
VERSION     DATIQF010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1724
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23711"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..539)
                     /locus_tag="VLL95_08410"
     CDS             complement(<1..539)
                     /locus_tag="VLL95_08410"
                     /inference="COORDINATES: protein motif:HMM:NF013073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HSR38922.1"
                     /translation="MVRKWLMVLGLLFTVGMTADLCAQKKSAPRKKTTTTHKKTTSSR
                     KSSSKSKPKVSLAAAIPAVKDSLLEKDIPVRNFDSIILASRQQQKSFKSPDFDLGKTL
                     GSTLESFLPIQFKYAILLNESVEKLSNLVLYKNIDDWYGTRYRYGGKTVRGIDCSAFM
                     QVISEFTFGWTLPRTAREQ"
     gene            774..>1724
                     /locus_tag="VLL95_08415"
     CDS             774..>1724
                     /locus_tag="VLL95_08415"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HSR38923.1"
                     /translation="MPVFSHLHCHTQYSLLDGAASIDSLYKKAAANNMPAIAITDHGN
                     MFGAFEFVSQAWKNTKVVGKDEKGKDKLEPVIKPIVGCEFYVVEDRHRKVFSKEQRDE
                     RYHQVLLAKNKKGYENLVKLTSLGFIEGMYSKYPRIDKTLIEKYSEGLIATTCCIGAY
                     VPQTILNKGEAEAEKEFQWWHQIFGDDYFIELQRHNMPEQTKVNEVLLKLAKKYNVPV
                     IATNDSHYTDREDYNAHDILLCINTGEKQSTPGFDDMTNDEVHIKNRRFKFPNDQFYF
                     KSPDEMKQLFNDIPESIDNTNAIVDKIEVLNLKKDILLPAF"
BASE COUNT          474 a          427 c          412 g          411 t
ORIGIN      
        1 tattgctcac gagcagtgcg gggcagtgtc cagccaaaag tgaactctga gatcacctgc
       61 ataaaagcgg aacaatcgat accccggacg gttttgcccc cgtagcgata acgggtgcca
      121 taccaatcgt cgatgttttt gtacaacacg agattggaga gtttttcaac cgattcattc
      181 agcaggatgg catacttgaa ctgaatgggc aggaaggatt ccagcgtgga tcccagcgtt
      241 ttacccaaat caaagtcagg gctcttgaac gacttctgct gctgccgcga tgccaggata
      301 atggaatcga aatttcgaac ggggatatct ttctccagca gtgaatcttt cacggccggg
      361 atggccgctg ccaggcttac cttgggcttc gacttgctgc tggatttgcg ggaggaagtg
      421 gtctttttgt gggtggtggt cgtcttttta cggggggctg atttcttctg cgcacacaaa
      481 tcagcagtca tccccactgt aaacagcaat cccagtacca ttaaccactt tcttaccatg
      541 ccttaacccc ttgttttgca agcgctgcga aggtattgaa accgaacttt tcaagccatg
      601 gcaattggca caattttgcc gataaagccg gtccctcctc ccgcattggc tgcgcttatt
      661 tgttaaacct ggccggcggc acctcttgtg gaaaatcggc cccggctggt agcgcctttt
      721 cctccaaatt tgaggccaga aattgttagt gaagtactga aaactgtagc gtcatgcctg
      781 tcttttccca tttgcattgc catacccaat attccctgct cgacggagct gcctccatcg
      841 attcgctgta caaaaaagct gccgccaaca atatgcccgc cattgccatc accgaccatg
      901 gcaatatgtt tggcgctttt gaatttgtaa gccaggcctg gaagaatacc aaagtggtag
      961 gcaaggatga aaaaggcaag gacaaactcg aaccggtgat caaacccatc gtgggttgcg
     1021 agttctatgt ggtggaagat cgtcaccgca aagttttctc caaagagcaa agagacgaac
     1081 gttaccacca ggtgttgctg gccaaaaaca aaaaaggata tgaaaacctg gtaaagctca
     1141 cttcgctggg tttcattgaa ggcatgtaca gcaagtaccc tcgcattgat aaaaccctga
     1201 tcgaaaaata cagcgaagga ttaattgcca ccacctgctg cattggcgcc tatgtgcccc
     1261 aaaccatttt gaacaaaggc gaagccgaag ccgaaaaaga atttcaatgg tggcaccaga
     1321 tatttggcga cgactatttc atcgaactgc agcggcacaa tatgccggag caaaccaagg
     1381 tgaatgaagt gctgctgaaa ttggcgaaga agtacaacgt gcccgtcatt gccaccaacg
     1441 acagccacta taccgatcgg gaggattaca atgcacacga tattttgctt tgcatcaata
     1501 ccggtgaaaa gcaaagcacc ccgggttttg atgacatgac caacgatgag gtgcatataa
     1561 aaaaccggcg cttcaaattt ccgaacgacc agttttattt caagagcccg gatgaaatga
     1621 agcagttgtt caacgacatc cccgagtcga tcgacaacac caatgcaatc gttgataaga
     1681 tcgaggtact gaacctgaag aaggatatcc tgttacctgc attt
//
LOCUS       DATIQF010000508         4110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_8428, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000508 DATIQF010000000
VERSION     DATIQF010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4110
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8428"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(154..885)
                     /locus_tag="VLL95_08420"
     CDS             complement(154..885)
                     /locus_tag="VLL95_08420"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HSR38924.1"
                     /translation="MNREITSWYSPSLGEEMPIAAYGHYGPALLLVPTAGADFLEYER
                     FQLMNDLENVVNAGKAKVFSVNSVNKQSWLNKEMEGPHKAIRHNQWNEYIFNEVVPFI
                     KSKTSPETPIIVSGASFGALHSMNLFLKRPDLLSGVIAMSGVYNLMEYTDGFYDEQVY
                     YNSPAHYMPNLNDHWYLENIRRSPNIHIFSGEGPYEAPWSAREFADVLYNKGITYELD
                     IWGPEWKHDWPTWRAVLPHYLETRL"
     gene            complement(1003..1680)
                     /locus_tag="VLL95_08425"
     CDS             complement(1003..1680)
                     /locus_tag="VLL95_08425"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR38925.1"
                     /translation="MLKIAIVDDMPNIRQMLRQKLAAQPDVRVLFTASNGKDFLEKMK
                     ADESGEMPDVVLMDLDIPELNGIETIAHAAVLYPDVRFLVLTVFDDDEKIFDAIKVGA
                     GGYLLKDDKLTDIVAALQELVEFGGVPMSPQVARKALRMLSQAQLPAISNDTSVSQKG
                     AGFDLTKREIEILSLMVDGKDSNEIATLLFLSVHTVRKHIANIYNKLHVCSRVQAIKV
                     AIKNNWV"
     gene            complement(1729..>4110)
                     /locus_tag="VLL95_08430"
     CDS             complement(1729..>4110)
                     /locus_tag="VLL95_08430"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSR38926.1"
                     /translation="FFVSTPAGLARIEAMGSGVKETILPVSSKAGPELLMVSNGSLYA
                     FGVNGPSFNVSIGDTTGITYSPYPRRLAGYKAVVYKDHIYVAALTGLFRMKQDGTQPE
                     PLNARFGLPDAAIVNDIFVDKHNNLWIATHGYGAIVWNADWITRTLPQEYPVQRLASD
                     NGKIWIASNHQWAGWEGAAFSVKQYPFLNQATGWCLQTDGTWLFSDLYNLYAGKDPAH
                     ISPNAVYVNPVGLSGLCQWRSDTVFMATYGRGVVVLKNKKQVGVITSADGLCDDMVEK
                     LFRLKNAVAASSYSKGLSLIGAGGKVVANISKQQGLPSNMVYFVGESGDSLLVGTRAG
                     LSIFRNGQKLRDWGSMDGLTGTKVLNAFHDSNGHLWVVSDAAVFMFENNRLVKPFEYS
                     SLPQSDFAISQSLYDSVSNALILAVGKEVIRIDLSGIPSENTQHSLSWQLLSVSGKTL
                     QPGSSYTLPAASNHLKAICRLPYFLAQDAPVLEYKLEGYDTGWRQTRFYYNINYPGLP
                     AGNYRLQARLMQRSGLPATVQTVVSFRIQKVWWQQWWFIACTVLAAMAFSAFVINRRN
                     NVKLKRQQEVFKARMQLQEEREMISRELHDNVGSQLTFLAGNLELLQESAQHQLPAEA
                     ADMVASLSQSTRETINDVRESIWALKKPQVSATMLADRLENLVHSRFKNPNAPAIHFI
                     KSFDEQMAFSPIIALNAFRIAQEGLSNALLHSKASEITLRMTQQDDNSLHIVIADNGK
                     GIAAADWKKEEHYGLENMKRRAAEHQLNLEIDTEIGKGTQLKFVLPARSENNA"
BASE COUNT          965 a         1050 c         1006 g         1089 t
ORIGIN      
        1 aataatgtgg tcaaaaaccg gcgacgcttt aaggccatgg ttacgttcaa tttgtcagcg
       61 aaagataatc cagctaccgt aatctggtgt ggtgaccccg aaaaaaagca ctcccgttgc
      121 tggaagtgct tctatgagtt aagaatcatt tggctagagc cttgtttcga ggtaatgcgg
      181 caacacggca cgccaggtcg gccagtcgtg tttccactca ggtccccaga tgtcgagttc
      241 gtaggtaatg cccttgttgt acaacacatc ggcaaactca cgggctgacc agggcgcttc
      301 gtatgggccc tcgccgctga aaatatggat gttcggactg cggcgaatgt tctccaggta
      361 ccagtgatca ttcaggttgg gcatataatg ggccgggctg ttgtaataca cctgctcgtc
      421 gtaaaagcca tcggtgtact ccatgaggtt gtacacgccg ctcatggcaa tcacgccact
      481 caacaggtcg ggccttttca agaacaggtt catgctatgc aaggccccaa aggaagcgcc
      541 actcacgatg atgggcgttt cgggagaggt tttgcttttg atgaagggca ctacttcatt
      601 gaaaatgtat tcattccact ggttgtggcg gatggctttg tgcggtcctt ccatttcttt
      661 gttcagccag ctttgtttgt tcacgctgtt cacgctgaaa actttcgctt tcccggcatt
      721 caccacattt tccaggtcgt tcatcaactg aaagcgttcg tattccagaa aatcagcgcc
      781 ggccgtaggt accagcaaca gggcaggtcc ataatgtccg tatgcagcaa taggcatctc
      841 ttcgcccagc gaaggactat accagcttgt aatttctcgg ttcatgcaat cttgtttaaa
      901 accttaataa aggccatttt ccgcaatggc cctgcaaaag taggccagga gaatgcggtt
      961 ttgcgtattc tggctcctta ctgcacaaaa tttggctgaa gtttacaccc aattgttctt
     1021 gatggccact ttaatagcct gtacccggct gcacacatgc agtttgttgt aaatattggc
     1081 aatgtgcttg cgtacggtat gtacgctcag aaaaagaagg gtagcaatct cattgctgtc
     1141 tttgccatcc accataagag acaatatctc aatttcacgt ttggtaagat caaaccctgc
     1201 acctttttga ctcacggagg tgtcattgct tatcgccggc aattgtgcct ggctcagcat
     1261 gcgcagcgcc ttgcgggcca cctgcggact cataggcacc ccgccaaact caaccagttc
     1321 ctggagcgcc gccacgatgt cagtgagttt atcgtctttc aacaggtaac cgcctgcgcc
     1381 cactttgatg gcatcaaaaa ttttttcatc gtcgtcaaat actgtcagca ccaggaagcg
     1441 cacatcgggg taaagtacag cggcatgagc aatggtttca atgccgttca attccggaat
     1501 gtcgaggtcc atgagtacca catccggcat ttcaccgctt tcatcagcct tcattttttc
     1561 aaggaagtct tttccattgc tggccgtgaa gagtacccga acatcgggct gcgccgccag
     1621 tttctgacgg agcatctgcc tgatattggg catatcatct actatagcaa tcttcaacat
     1681 agtggatgaa gctaaagtac aggcaacagg aggcatctgc tatactcatt atgcattatt
     1741 ttcagatctg gcaggcagta caaactttaa ctgcgtgcct ttgccgattt cggtgtcaat
     1801 ctccagattc aattggtgtt cggcggccct ccgtttcatg ttttccaacc cataatgctc
     1861 ttcctttttc caatccgctg cggcaatgcc ttttccgttg tcggcaatta caatatgcag
     1921 gctgttgtcg tcctgttgtg tcatgcgcag ggttatctcc gaagctttgc tgtgcagcaa
     1981 tgcgttactg aggccttcct gggcaatcct gaatgcattg agcgcaatga tgggtgaaaa
     2041 agccatttgc tcatcaaacg atttgatgaa atgaatggct ggtgcatttg gatttttaaa
     2101 gcgactgtgc accaggtttt caagacggtc ggccagcatg gtagcactca cctgcggttt
     2161 ttttaatgcc caaattgatt ctcttacatc attgatggtt tcgcgggtgc tttggctgag
     2221 cgaagcaacc atatcggctg cttcagcagg cagttggtgc tgcgccgatt cctgcagcaa
     2281 ttccaggttg cctgcaagga aggtgagttg tgatcccaca ttgtcgtgca attcgcggct
     2341 gatcatctcc ctttcttcct gcagttgcat ccttgccttg aatacctcct gttgtctttt
     2401 cagttttaca ttgttgcgcc tgttgatgac aaaagcactg aatgccatag cggccagtac
     2461 ggtacaggca ataaaccacc attgctgcca ccacactttt tgaatccgga aggaaacgac
     2521 cgtttgaaca gtcgcaggca acccgctgcg ttgcatcaac cttgcctgta gccgatagtt
     2581 gccggcaggg agccctggat aattgatgtt gtaatagaat cgggtttggc gccagccagt
     2641 atcatagcct tccaatttgt attccagaac aggtgcatcc tgtgccagga aataaggtag
     2701 cctgcatatt gctttcaggt ggttggatgc agcaggcagc gtgtagctgc tgcccggctg
     2761 cagcgttttg ccggataccg aaagcaattg ccaggacagg gaatgttggg tattttctga
     2821 aggaatccct gacaagtcga tgcgaatgac ctccttgccc acagccaata tcaacgcatt
     2881 ggaaacagag tcatacagcg attgggaaat agcaaaatcc gattgtggta aactgctgta
     2941 ttcaaaaggt tttaccaggc gattgttttc gaacataaac acggcggcat cactcaccac
     3001 ccaaagatgt ccattactat catggaaagc attgagcact ttggtacccg tcaaaccatc
     3061 catgctaccc caatccctca acttctggcc atttcgaaaa atgctgagtc ctgccctggt
     3121 acctaccagc aaactgtcgc cggattcacc aacgaagtaa accatattgc tgggcaagcc
     3181 ctgctgtttg ctgatgttgg ccactacttt gccgccggct ccaatcagac taaggccttt
     3241 gctgtagctg ctggcagcca ccgcgttttt caggcggaac agtttttcca ccatatcgtc
     3301 gcacaggcca tcggcactgg tgatgacgcc gacttgcttt ttattcttca aaacaacaac
     3361 gcctcggcca taggtagcca tgaagactgt gtcggatcgc cattggcaga gaccggaaag
     3421 accaaccggg tttacataca ctgcattcgg actgatgtgg gcagggtctt tgccagcgta
     3481 caagttgtaa agatcgctga agagccaagt cccgtctgtt tgaaggcacc acccggtggc
     3541 ctggttcaga aatgggtact gtttcacgct gaaggcagcg ccttcccagc cggcccactg
     3601 gtggttgctg gcgatccaga tctttccgtt gtctgatgcc aggcgttgta ccgggtattc
     3661 ctgtggcagc gttcttgtaa tccaatcagc attccacaca atggcaccgt agccgtgggt
     3721 agcaatccaa aggttgttgt gtttgtctac aaaaatgtcg ttgacgatgg cagcatcggg
     3781 caagccaaac cgtgcgttca gtggctctgg ttgggtcccg tcttgcttca tgcgaaacaa
     3841 accggttaag gctgctacat aaatgtggtc cttgtaaacg acagccttgt aaccagcaag
     3901 ccgcctgggg taaggcgagt aggtgatgcc ggttgtatcg ccaatgctga cattgaatga
     3961 aggcccgttg acaccaaagg catacaggct tccgttgctc accatcagca attcaggccc
     4021 ggctttagat gatacaggca gtatagtttc tttcacacca ctccccatgg cttctatgcg
     4081 ggcaagaccc gcaggggtac tcacaaaaaa
//
LOCUS       DATIQF010000509         1862 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_175562,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000509 DATIQF010000000
VERSION     DATIQF010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175562"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..444
                     /locus_tag="VLL95_08435"
     CDS             <1..444
                     /locus_tag="VLL95_08435"
                     /inference="COORDINATES: protein motif:HMM:NF023109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3276 family protein"
                     /protein_id="HSR38927.1"
                     /translation="VAYEHTDKKMDSVYSKRIKAGKRRTYFFDVRSTRGNDYFLTITE
                     SRKRFNEDGYDRHKIFLYKEDFNKFLKGLNEAVDYVKTELMPDFDFDAFNHEDVEAGE
                     EETEVTPGSVPGAAEAAAAQPISSNGHSGSSNGTAPASDEEVDKW"
     gene            complement(500..934)
                     /locus_tag="VLL95_08440"
     CDS             complement(500..934)
                     /locus_tag="VLL95_08440"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HSR38928.1"
                     /translation="MFSSTTHIRIHYALTDQMGVVYYGNYAQLFEIARTEAIRKLGFT
                     YKELEHMGVMMPVSDMHVHFRRPLFYDDLAAVEITIKELTGGKKVTFHGEIRNEKGEV
                     CTTSDISLFFVDAATRKPVPMPAPLLEVLRPFFENTDPGNPQ"
     gene            complement(934..1680)
                     /locus_tag="VLL95_08445"
     CDS             complement(934..1680)
                     /locus_tag="VLL95_08445"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSR38929.1"
                     /translation="MSGTEWFNEWFDTPYYHELYFKRDEAEASAFIDRLLVYLNPPPA
                     CTMLDVACGRGRHSLHLASKGFEVTGIDISPSSIDHAKAQSGPNAQFFVHDMRQPFWI
                     NYFDFAFNFFTSFGYFRTRREHEAALRTIAQSLKKEGVFVIDYLNVHYAEDHFKHSFD
                     LEQERLNFHITKLMDESHFYKKIEVEQDSFTEPMVYTERVSKFSLGDFTEMLAYQGLQ
                     VQDVFGDYQLGPYHVRNTPRMIIVAKKVKN"
BASE COUNT          502 a          425 c          461 g          474 t
ORIGIN      
        1 gtggcgtacg agcataccga caagaagatg gacagcgtgt acagcaagcg catcaaagcc
       61 ggtaaaagaa ggacctactt cttcgatgta aggtcaaccc gtggcaatga ttatttcctg
      121 accattaccg aaagccgtaa gcgtttcaac gaagatggct acgacaggca caagattttt
      181 ctgtacaagg aagatttcaa caagttcctg aagggtttga atgaagccgt ggattatgta
      241 aaaacagaat tgatgcccga tttcgacttc gatgctttta accacgaaga cgtggaagcg
      301 ggtgaagagg agaccgaggt gactccgggt tctgttcccg gtgctgccga ggcggctgca
      361 gcccagccca tctccagcaa tggacacagc ggatccagca acggtactgc gccggcttct
      421 gacgaagaag tggacaaatg gtagccaaca attttactgt cgatagaaga aaggccgcgt
      481 ttttgaaaat gcggcttttt tattggggat tgcccgggtc ggtgttttca aaaaatggac
      541 ggaggacttc caaaagcggg gcaggcatgg gcaccggctt tcgggtggca gcatccacaa
      601 aaaacaggga aatgtcactg gtggtgcata cctcgccctt ttcatttctt atttcaccat
      661 gaaaggtgac cttcttaccg ccggtcagtt ccttgatggt tatttccacc gccgccaaat
      721 cgtcgtaaaa aagcggccgc ctgaagtgca cgtgcatgtc gcttaccggc atcattacgc
      781 ccatgtgctc cagttccttg taggtgaatc ccagtttcct gatggcttca gtcctggcaa
      841 tttcgaacag ttgcgcatag ttgccataat aaaccacccc catttgatcg gtaagtgcgt
      901 aatgaatgcg gatatgagtg gtgctgctga acattagttt tttacttttt tggctacaat
      961 gatcatgcgg ggagtgtttc tcacatggta tggccccaat tggtaatcgc caaacacatc
     1021 ctgcacctgc aggccctggt aagccagcat ttcagtgaaa tcgccgagtg aaaatttcga
     1081 cacccgttct gtatatacca ttggctctgt gaatgaatcc tgttctacct ctattttctt
     1141 gtagaaatgt gactcatcca tcaatttggt aatgtgaaaa ttcagccttt cttgttcaag
     1201 atcaaaagag tgtttgaaat gatcttcagc ataatgaaca tttaggtagt cgatcacaaa
     1261 aacaccctcc tttttcaggg attgagcgat ggttctcagg gcggcttcgt gttcgcgccg
     1321 ggtacggaaa tagccgaaac tggtaaagaa attgaaggca aaatcgaaat agttgatcca
     1381 aaatggctga cgcatgtcgt gtacgaaaaa ctgtgcattg ggaccagatt gcgcctttgc
     1441 atggtcaatg gaactgggag agatatctat gccggttact tcaaatcctt tggaagccag
     1501 gtgaaggctg tgccgtccac ggccgcaagc cacatccagc atggtgcatg caggtggcgg
     1561 attcaaatag accaacagcc ggtcgataaa ggccgaggct tccgcttcat cccttttaaa
     1621 atataactca tgataataag gggtgtcaaa ccactcatta aaccattcgg ttccggacat
     1681 ataacttata gtgattggac ggcaaaccta atgaatgaag gatttcgcga tcggaaaaca
     1741 ttatggccgg cctcccagaa aatgttgtgt ggcattctca gaacatttac attagaaatc
     1801 ctggcagaaa acgctgatgg acgagccaac cgcttgttga atggtacctg atgcctttcc
     1861 ct
//
LOCUS       DATIQF010000510         3125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_267068,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000510 DATIQF010000000
VERSION     DATIQF010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3125
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267068"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            224..457
                     /locus_tag="VLL95_08450"
     CDS             224..457
                     /locus_tag="VLL95_08450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38930.1"
                     /translation="MMKSYFLLLFAWTITTWATAQEVVTPPRPDTSSQQAVVVNHLPL
                     SEIDIPVRIDLRPVYAFANRYIDTVYTSPNYPN"
     gene            479..1663
                     /locus_tag="VLL95_08455"
     CDS             479..1663
                     /locus_tag="VLL95_08455"
                     /inference="COORDINATES: protein motif:HMM:NF025714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4403 family protein"
                     /protein_id="HSR38931.1"
                     /translation="MRYQYRFVRGPLQFKAVNNALYVSFSGYYGIRGSTRVCTNMGNT
                     PWTPSCSCGFGTEKPRRIDAGFVIQLRLLPDYRLGVTVNRTNPVPVDKCEVCFFGKDV
                     TKQVASQVKTELDASINAFKQQLEKFSFKPYLQLAWDSLQTPYNLSGFGYLSVQPAAM
                     RISQALLVRDSLFLSVGLSAKPELKDQPDLQKKPMPSLSDFQLKNGFRLFVSQTLSYD
                     SLSALVNSNIAGKEFQVGKGLLKKSVRIDSVRLQGGGEKMFIKVFVSKAAKGVFFLEG
                     KPTWNPEKQQLYFDQLDYHIESKQWLVKSASYLLDGTITSKLAAYSTFDLSERAKSLI
                     GSIAQQMNRQLYPGVNSRGFLNKFSIDSMQAVANGLHVQGMAEGKLWIDVNAQQLLQQ
                     WL"
     gene            complement(1675..2199)
                     /locus_tag="VLL95_08460"
     CDS             complement(1675..2199)
                     /locus_tag="VLL95_08460"
                     /inference="COORDINATES: protein motif:HMM:NF016060.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HSR38932.1"
                     /translation="MQSGYLWRRPKMLSRVIIQILDWIYPVFQRLVPRQTFYYAACGG
                     GNTLLSIFIFFVTYNFVLKKQLLHLPLVTLSPHIASMIISFLLTFPLGFYMARHVVFS
                     GSALRGRHQLMRYLLSTAGSVLLNYVNLKVMVDLLHWYPTISQIINTGIVIAFSYTAQ
                     KYFAFRKSVAKPSR"
     gene            2265..>3125
                     /gene="argS"
                     /locus_tag="VLL95_08465"
     CDS             2265..>3125
                     /gene="argS"
                     /locus_tag="VLL95_08465"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF012952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HSR38933.1"
                     /translation="MQLGVYLKELAKQALAGLYELNVEPAQITLNETKPEFEGDYTIV
                     LFQFVKQARRSPEQMGKELGEWMLANSQGNIVAFNVIKGFLNLSVADHYWIQFLQANN
                     TPQFGKAAPNGRKVMVEYSSPNTNKPLHLGHLRNNFLGWSVAELYKWNGYDVWKTCVV
                     NDRGVHICKSMLAWKKFGEQATPESTGKKGDHLVGDFYVQFELELQKQSAPLIDSLLN
                     GEAIAGLEPAVAEKAGVLAAKLKDASLPAEKVAEIKAELKDIARNATPIIQEVREMLL
                     KWEQGDEEVLS"
BASE COUNT          818 a          728 c          826 g          753 t
ORIGIN      
        1 tgatcccttt atcgcaggcg gttcgccttt cccgtttcct gaagcccgcc gacaaattct
       61 tcgtgatacg caatgctgat cacaatggca tgccggcatc agccatttac catcaaagcc
      121 tcgatacggc gctgggtaca gagatactgc ctgttgattc agcttcgtta aatcagtgag
      181 caggcaatcc agtgttcatg cgaatgccgc aatttcgtgc cgcatgatga agtcatattt
      241 tttactgctt tttgcatgga ccataaccac ctgggctact gctcaggaag tggtgacgcc
      301 accaaggccc gacacttctt cgcagcaggc tgtcgttgtc aaccatctcc ctttgagtga
      361 aattgacatc ccggtcagga ttgatttgcg gcctgtatat gcattcgcca accgatacat
      421 cgatacagtg tatacttcgc ccaattatcc caactaatgg ttgacggatg gctgcagctt
      481 gcggtatcaa taccgttttg taagagggcc gcttcaattc aaggcagtga acaatgcttt
      541 gtatgtttca ttcagtggct attacgggat acgcggttcc acccgggttt gtaccaatat
      601 gggcaacacg ccctggacgc ccagttgcag ttgtggtttc ggtaccgaaa agccaaggcg
      661 cattgatgcc ggatttgtta ttcagctgcg cttgttgccc gattaccgct tgggtgtcac
      721 cgtaaatcgt accaacccgg taccggtaga taaatgcgaa gtatgctttt ttggaaagga
      781 tgtgacgaag caggtggcca gccaggtgaa aactgaattg gatgcttcca tcaatgcttt
      841 caaacaacaa ctggagaaat tcagcttcaa gccgtatttg caattggcct gggacagcct
      901 gcaaacacct tacaatcttt caggttttgg ttatctcagt gtacagccgg cggctatgcg
      961 catcagccag gccttgctgg tgcgggactc cctgtttttg agtgttggcc tgagtgccaa
     1021 accggaactg aaggatcagc cggaccttca gaaaaagccc atgccatcgc tgtccgactt
     1081 tcagttgaag aacggttttc gattgtttgt atctcaaact ctttcttacg attcgctgag
     1141 cgcattggtg aacagcaata tcgccggcaa agaattccag gtagggaagg gcctgctgaa
     1201 aaaatcggta aggatcgatt cggtgcgact gcaggggggc ggtgaaaaaa tgttcatcaa
     1261 agtgtttgtt tccaaagcgg ctaaaggcgt tttcttcctg gaaggcaaac ccacgtggaa
     1321 tcctgagaag cagcaattgt atttcgacca gctggactat cacatcgaat cgaaacaatg
     1381 gctcgtgaaa tcggccagct atttgctcga tggcaccatt accagcaaac tggccgcgta
     1441 cagcactttt gatctgtcag aaagggccaa gtcacttatt ggttccattg cgcagcaaat
     1501 gaaccggcaa ttgtatcccg gtgtaaacag caggggcttt ctcaacaaat tctccattga
     1561 ttcaatgcag gcggtagcca acggactgca tgtgcaggga atggcagaag gtaaactgtg
     1621 gatagatgta aatgcacagc aactgctgca gcagtggttg taaggagcca attatcagcg
     1681 gctgggtttt gccacacttt tccggaaggc aaaatatttc tgcgccgtgt agctgaacgc
     1741 aataacgatg cctgtattga tgatttgtga aatggtaggg taccagtgca gcaggtccac
     1801 catcactttc aggttcacgt aattaagcag tacgctgcct gcagttgaaa gcaggtaccg
     1861 catgagttgg tgccgtcccc gcagggcgct gcccgagaat accacatgac gggccatgta
     1921 aaaacccagc ggaaaggtga gcaggaatga aatgatcatg gatgcgatgt gcgggctcaa
     1981 agtcaccaat ggcaggtgca gcaactgctt tttcagcaca aaattgtagg tgacgaaaaa
     2041 gatgaaaatg ctcagcaggg tattgccgcc gccacaggcc gcataataaa aagtttgccg
     2101 gggcaccagg cgctgaaaca ccgggtaaat ccagtcgagt atttgtatga tgacgcggga
     2161 aagcattttc gggcggcgcc aaaggtagcc ggattgcaat acatttgcag cccattgccc
     2221 ccgtgggcgc tcattgtaag aatccgttaa gaaaattgag atacatgcaa cttggtgttt
     2281 acctgaaaga actggcaaag caggccctgg caggattgta cgaactgaat gtggagccgg
     2341 cccagattac gctgaacgaa accaaacctg agtttgaagg ggattatacc attgtgcttt
     2401 ttcaatttgt aaagcaagcc cgccgttcgc cggagcaaat gggcaaggaa ctgggcgagt
     2461 ggatgctggc caacagccag ggcaatattg tggccttcaa tgtcatcaaa ggctttctca
     2521 atttgtcggt tgccgaccat tactggatac agtttttgca ggcgaataat accccccaat
     2581 ttggcaaagc cgcaccgaat gggcgcaagg tgatggtgga atattcatca cccaatacca
     2641 ataaaccatt gcacctgggg cacctgcgca acaacttttt gggatggagt gtggccgagt
     2701 tgtataaatg gaacggttat gatgtatgga aaacctgcgt tgtcaatgac cgcggggttc
     2761 acatctgcaa gagcatgctg gcctggaaga aatttggcga gcaggctacg cccgaatcaa
     2821 ccggcaaaaa aggcgatcat cttgtgggcg atttctatgt gcaattcgaa ctggaactgc
     2881 aaaagcaaag cgccccattg attgattcat tgctgaacgg tgaagccatt gcaggcctcg
     2941 agccggctgt tgctgaaaag gccggtgtgc tggcagccaa attgaaggat gcatcattgc
     3001 ctgctgaaaa agtggccgaa ataaaggctg aactgaaaga cattgcccgc aatgctacac
     3061 ccatcattca ggaagtgcgt gaaatgctgt tgaaatggga acagggcgat gaagaggtat
     3121 tgtct
//
LOCUS       DATIQF010000511         2238 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_297396,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000511 DATIQF010000000
VERSION     DATIQF010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297396"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2238)
                     /locus_tag="VLL95_08470"
     CDS             complement(<1..>2238)
                     /locus_tag="VLL95_08470"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSR38934.1"
                     /translation="GSRAAGGVIMITTKKGSKGDRIKVNYDVTMGVTNVRQKWDLLNA
                     DQFVQIANEKLANANQQARAFANPAGINTDWQENVMVKNAFNQTHNISFSGGSRKAQY
                     FFSAGYSDQQGVIISNKNTAYRLRFNFESELNKYIKFGNNTTLAKQIDFDQNNGSNSL
                     GGAIASSLRQLPNVDPYSTTHPSGYNILFPTANSMAPAPNLQSVDDNFFNVAFTLRNN
                     IQSSDKHRIVNNSFLEISPLAGLKLRTVFAYDVLADYSFLSWDPRHGDGFGSQGIAQN
                     IQQNFQRITWQNILNYNKSFGKHNVYFTGVYEIQKDLTKWFSAQANQVSDLFFIQENV
                     ISGSGSVQQVGGNYSKSAIESYLGRFNYDFGGKYFLQASIRRDGLSSLASENRYGNFP
                     GFSAGWRASEEGFWKSSSWLAKNVNDFKLKASYAVVGNPPGGFPYLSTFANRPYGNIN
                     GLGPSSVGNRALQWERSRKYDFGFEASLLNNRFQLTADYFLNDIDELVLAVPTPQSAG
                     VPGNAISQNIGTARNSGFEISLSGDIIRHTNFQWSFNVNFTSVKNEIKSLYTIGDAPV
                     TIIPNGNYNLIQVGQPMNVIHGYRFAGVNVNTGNPMYFKADGSLVQHSTSNGNNGYYT
                     AKSLDDPTLGTQTSLTFNDRAILGKAIPTWFGGFGNNFRYKNFDFEFFFRFSGGNNIM
                     NITRQEILLNQQFQNNGTEILQRWTTPGQVTNVPKLRNGNGNAINQAGLAVDRFVEKG
                     DFFRLQ"
BASE COUNT          528 a          513 c          631 g          566 t
ORIGIN      
        1 ctgcaagcgg aagaagtcgc ctttctctac gaaacggtca actgccaaac cagcctggtt
       61 gatggcgttg ccgttgccat tgcgcaattt gggaacattg gtaacctggc caggtgtagt
      121 ccaacgctgc aggatctctg taccgttgtt ctggaactgc tggttcagca ggatttcctg
      181 gcgggtgatg ttcatgatgt tgttgccacc gctgaaacgg aagaagaatt caaaatcgaa
      241 attcttgtaa cggaagttgt ttccgaaacc accgaaccag gtaggaatgg ctttacccag
      301 gatggcacga tcgttgaagg tgagcgaagt ctgtgtaccc aaagtaggat catccaaaga
      361 cttggcagtg tagtagccgt tgttgccatt gctggtgctg tgctgaacga ggctgccatc
      421 tgctttgaag tacatggggt taccggtatt cacgttcaca ccggcaaagc ggtagccgtg
      481 gattacgttc atgggttggc ccacctggat gaggttgtag ttgccattcg gaataatggt
      541 gacaggggca tcaccgatgg tgtacaatga cttgatttca ttcttaacgc tggtgaagtt
      601 cacgttgaag ctccactgga agttggtatg acggatgata tcaccagaaa ggctgatttc
      661 aaaaccactg ttgcgggcag taccaatgtt ctggctgatg gcgttacctg gtacaccagc
      721 gctctgcggt gtaggcacgg ccaataccag ttcatcgata tcgttcagga agtagtcagc
      781 agtcaattgg aaacggttgt tcaggagtga agcctcaaaa ccgaagtcat actttctgct
      841 gcgctcccac tgcagggcac ggtttccaac tgaagagggt ccgagaccgt tgatgttacc
      901 gtaaggacgg ttggcaaagg tgctcaggta ggggaatccg cctggagggt tacccaccac
      961 cgcataagaa gctttcagct tgaagtcgtt cacattcttg gccagccatg aagagctttt
     1021 ccagaagcct tcttctgaag cacgccatcc tgctgagaag ccggggaagt tgccataacg
     1081 gttttcagaa gcgagtgagc tcagaccgtc gcgacggata ctggcctgca ggaagtactt
     1141 gccaccgaag tcatagttga aacgaccgag gtaagattca atggcagact tggaatagtt
     1201 accacccacc tgctgtaccg aacctgatcc actaatcacg ttctcctgga tgaagaacag
     1261 gtcagaaacc tggttggcct gtgcagagaa ccacttggtc aggtctttct ggatttcgta
     1321 cacaccagtg aagtatacat tgtgtttgcc aaagctcttg ttgtagttca ggatattctg
     1381 ccaggtaatg cgctggaagt tctgctgaat gttctgggca ataccctggc tgccgaaacc
     1441 atcaccatgg cggggatccc agctcaggaa gctgtagtcg gccaaaacgt cgtaggcaaa
     1501 caccgtacgc aatttcaaac cggccagcgg tgaaatttca aggaaagagt tgttcacgat
     1561 gcggtgcttg tcagaagact ggatgttgtt gcgcaaagtg aaggccacgt tgaagaagtt
     1621 gtcatccacc gactgcaggt tgggggcagg tgccattgag ttggcagtgg ggaacaggat
     1681 gttgtatcct gaaggatgcg ttgtgctgta aggatcaacg ttgggcagct gacgcaaaga
     1741 agaggcgata gcgccaccca gtgagttgga accgttgttc tggtcaaagt caatctgctt
     1801 ggccagggtg gtgttgtttc caaacttgat gtatttgttc agctcgcttt caaagttgaa
     1861 gcgcaggcgg taagccgtgt tcttgttgct gatgatcaca ccttgctgat cggaatagcc
     1921 ggcagagaag aaatattgtg ctttgcggga accaccggag aagctgatgt tatgggtctg
     1981 gttgaaggca ttcttcacca ttacattctc ctgccagtcg gtattgatgc cagcggggtt
     2041 ggcaaaagca cgggcctgct ggttggcatt ggccagtttt tcgttggcga tctgtacaaa
     2101 ctgatcggca ttcaacaggt cccatttttg ccttacgttg gtaacgccca tggtcacatc
     2161 atagttcacc ttgatgcggt cgcccttgct tccttttttg gtggtgatca tgataacacc
     2221 accggcggcg cggctacc
//
LOCUS       DATIQF010000512         1778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_190908,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000512 DATIQF010000000
VERSION     DATIQF010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190908"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..382
                     /locus_tag="VLL95_08475"
     CDS             <1..382
                     /locus_tag="VLL95_08475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38935.1"
                     /translation="NQQFQNNGTEILQRWTTPGQVTTVHKLRNGNGNAINQAGLAVDR
                     FVEKGDFFRLQNVVIGYNFDGQKLSNATNGFISGIRIFAQGQNLWMTSKYSGADPENA
                     SEAGLDAAVSPQVILLSGGLKVSF"
     gene            414..>1778
                     /locus_tag="VLL95_08480"
     CDS             414..>1778
                     /locus_tag="VLL95_08480"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSR38936.1"
                     /translation="MKNKYFKNAALLGLLTLSLASCKKELDLQPYNAFTDESVFTTPD
                     RVNLAINGVYDAAQSGFFNGAIDRGYPFGAANVQQGDARGEDVVNLQAFYQITYQATY
                     NPTTANNVNYWASLYRLVNFANIADEGLAKAAGNGVITAAVATSAQAEMRFIRAWSHH
                     ELVTFFARPFLDGNGDKPGVPYRDFAVAGSDAVNKVRSTPRPTVAEVYTKLLADVDFA
                     IANLPTQQTTAANRKIRAEKAAAMVLKMRILMHMGRFQEAKAVGDQLVPASVNPASPT
                     SVVSPIGGYALTAAPGAAFTANSLSSENIFSIKNDALDNPGVNAALGTMFGAANLGAR
                     GLVSLSPIVWNRAEWLDGDKRRTDLFALGTNANTRQSIFTLKYPDAVQRGNNNPIFRY
                     AEVLLMLAECEARLGTGVSQRAIDLLNVVRNRSIPTPATNQYTAASFATQTDLVRAIL
                     WERRF"
BASE COUNT          406 a          504 c          452 g          416 t
ORIGIN      
        1 gaaccagcag ttccagaaca acggcaccga aatcctgcag cgttggacaa ctccaggcca
       61 ggtgactact gttcacaaat tgcgaaatgg caacggcaac gccatcaacc aggctggttt
      121 ggctgttgac cgtttcgtag aaaaaggcga cttcttccgt ttgcagaacg tagtgattgg
      181 ctacaacttc gatggtcaga aactctccaa tgctaccaac gggtttattt ccggtatccg
      241 catcttcgcc cagggccaga acctgtggat gacttcaaag tacagcggag cggatcctga
      301 gaacgccagc gaagcaggat tggatgccgc ggtatcgcca caggtgatcc ttctttccgg
      361 tggcttgaaa gtgtcattct aatttggatt gttgaacaac aaaaaaagag atcatgaaga
      421 ataaatattt caagaatgct gcactgctgg gcctgttgac cctgagcctg gcgagttgca
      481 aaaaagagct ggaccttcag ccctacaacg cttttaccga tgaaagcgtg tttaccactc
      541 cagatcgtgt gaacctcgcc atcaacggtg tgtacgatgc ggcccagagc ggtttcttca
      601 acggtgccat cgaccgtggg tatccatttg gcgctgccaa cgtacagcag ggtgatgccc
      661 gtggggaaga tgtggttaac ctgcaggctt tttaccagat cacctaccag gccacctaca
      721 accccaccac ggccaacaac gtgaactact gggcttcgtt ataccgtctc gtcaactttg
      781 ccaacattgc tgatgaaggc ctggcaaaag ctgccggtaa tggtgttatt actgctgctg
      841 tagccaccag cgcccaggca gaaatgcgtt tcatcagggc atggtcgcac catgaactgg
      901 taacgttctt tgcccgccca ttcctcgatg gcaatggcga caagcccggc gttccctatc
      961 gtgattttgc cgttgcaggt tctgatgccg taaacaaggt gcgcagcacc ccaaggccaa
     1021 ccgtagcgga agtgtatacc aagttgctgg ctgatgtgga ttttgccatt gccaacctgc
     1081 ctacccagca gaccactgct gcaaatcgca agatccgtgc tgaaaaggct gctgccatgg
     1141 tgctcaagat gcgtatcctg atgcacatgg gccgcttcca ggaagccaaa gcggtgggcg
     1201 atcaactggt gcctgccagt gtaaaccctg ccagccccac ttcagtggta agccccattg
     1261 gtggctatgc actgaccgct gctcctggcg ctgcgtttac tgccaacagc ctgtcttcag
     1321 aaaacatctt cagcatcaag aacgatgccc tggataaccc cggtgtgaat gcagccctcg
     1381 gtaccatgtt tggcgctgcc aacctcggtg ctcgtggcct cgtttctttg tctcccatcg
     1441 tttggaaccg tgctgaatgg ctggatggcg acaagcgtcg tactgacctc ttcgccctcg
     1501 gtaccaatgc caacacccgc cagagcattt ttacactgaa gtatcctgac gccgtacagc
     1561 gtggtaataa caaccccatc ttccgctatg ctgaagtgtt gttgatgctg gctgaatgcg
     1621 aagcccgcct gggtactggt gtttctcagc gtgctattga cctgctgaac gtggtgcgca
     1681 accgcagcat tcctacacct gccactaacc agtacaccgc cgcttctttt gcaacacaaa
     1741 ccgacctggt tcgtgctatc ctgtgggagc gtcgcttt
//
LOCUS       DATIQF010000513         1876 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_38708, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000513 DATIQF010000000
VERSION     DATIQF010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1876
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38708"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..676
                     /locus_tag="VLL95_08485"
     CDS             <1..676
                     /locus_tag="VLL95_08485"
                     /inference="COORDINATES: protein motif:HMM:NF016064.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YeeE/YedE thiosulfate transporter family
                     protein"
                     /protein_id="HSR38937.1"
                     /translation="QALCKGPFPGWPHSVSTFNTKSITMDTLLDLLLQARDFIAQPWP
                     WWVAGPAIAGVMFLLLYFGHEFGISENFRIMCAADGADEMNEFFNINWKDAQWNLLVA
                     LGAVFAGYMASHYFLGADGNVAHISDATVASLQQIGVNVEKGKVPIVADFVSWTGLFS
                     ARGFITVVLGGFLVGFGSRYAGGCTSGHAISGLSALQLPSLIAVVGFFIGGLFVTYVI
                     LPLLLS"
     gene            785..1108
                     /locus_tag="VLL95_08490"
     CDS             785..1108
                     /locus_tag="VLL95_08490"
                     /inference="COORDINATES: protein motif:HMM:NF016064.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6691 family protein"
                     /protein_id="HSR38938.1"
                     /translation="MFRFQSFHMYGIIGSAVLAGIIIVQVIKRRHLKNTAGQEIQIKD
                     KTRSIPRYLYGGIIFGMGWALAGACPGPMFILMGAGHTVFIVYLLAAMTGTYVYGKLR
                     PKLPH"
     gene            complement(1153..>1876)
                     /locus_tag="VLL95_08495"
     CDS             complement(1153..>1876)
                     /locus_tag="VLL95_08495"
                     /inference="COORDINATES: protein motif:HMM:NF018378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="D-glucuronyl C5-epimerase family protein"
                     /protein_id="HSR38939.1"
                     /translation="CVSWLQQNMERKDDHALFIFHWQQPWYDSVKAPFTSGMTSGLAM
                     QVFLNANRLQPDSSLLRDAALLLRGFAIPVEAGGFTYKEPVGWWFEEIADTGSHTPRI
                     LDGHMFAMLGLHHYYRQTGSQEALLYFKEGEKALKHYLPAYDAGHGEIRYDVYGKLAD
                     KKYKRIITGQLEQLWQISADSVYWQYFRQWRQPMEKPYVYRAIRDRNRSGLILVALLW
                     FAAAAVAYAITFASRKFLGRRK"
BASE COUNT          441 a          497 c          478 g          460 t
ORIGIN      
        1 acaggcgctt tgcaaaggcc cattcccggg atggccgcac agcgtttcaa ccttcaacac
       61 caaatcaata accatggata cactgctcga cctgttgcta caagccaggg attttattgc
      121 ccaaccatgg ccctggtggg tagccggccc ggccattgcg ggtgtcatgt ttctgctgct
      181 ctacttcgga catgaatttg gcatctccga aaatttccgc atcatgtgtg ccgccgatgg
      241 cgccgacgag atgaacgagt tctttaacat caactggaag gatgcccaat ggaacctgct
      301 ggtggcatta ggtgcggtgt ttgccggcta catggcttcg cattatttcc tgggtgctga
      361 tggcaacgta gcacacatct cggatgcaac agtggccagc ctgcagcaaa taggcgtcaa
      421 cgtggaaaaa ggcaaagtgc cgatagtagc cgactttgtc agttggaccg gtctcttcag
      481 tgcgaggggt ttcattaccg ttgtgctggg tggcttcctg gtaggctttg gttcgcgata
      541 cgccggtggc tgcacctcgg gccatgccat cagcggcctc agtgccctgc aactgccttc
      601 gctgatcgct gtcgttggat tctttattgg cgggctgttt gttacctatg taattctgcc
      661 cctactactt tcttaaccca atcaatcatt agccatgaga atgtcgagat atatactggt
      721 aggcatgctg ctcgggtttg ccttgtaaaa aagcaaggct gtatcctact tccgcattta
      781 tgaaatgttc cgttttcaaa gctttcatat gtacggcatc attggttcag ccgtgctggc
      841 aggcatcatc attgtgcagg tgatcaaacg aaggcacctg aagaatacgg ccggccagga
      901 gatccagatc aaagacaaaa ccagaagcat tccccgctac ctatacggtg gcatcatctt
      961 cggcatggga tgggcgctgg cgggcgcctg ccctggacca atgttcatcc tgatgggagc
     1021 cggtcacacc gtgttcattg tgtatttgct ggcagccatg acaggcactt atgtgtacgg
     1081 caaactgcgt cccaaattgc cccactaggc aaaccatccc tgttaactgt ttgatgaaaa
     1141 aacatcagct gctcactttc ggcgtcccag gaatttccga ctcgcaaaag tgatagcgta
     1201 tgcaacagca gcggcggcaa accaaagcaa agccaccagt atgaggcctg agcggttgcg
     1261 atcgcggatg gcacggtata catagggctt ctccatgggc tgacgccatt ggcgaaaata
     1321 ttgccagtat acactatcgg ctgaaatttg ccacagttgc tcaagctgac ccgtgatgat
     1381 gcgcttgtat tttttgtcgg ccagcttgcc atacacatca taccttattt cgccatggcc
     1441 ggcatcgtaa gctggcaggt aatgtttcag cgccttttct ccttccttga aataaagaag
     1501 ggcttcctgg ctgccggttt ggcggtaata gtggtgcaag ccaagcatgg caaacatatg
     1561 accatccagt atcctgggcg tatgactgcc tgtatcggca atttcttcaa accaccagcc
     1621 aacaggttcc ttataggtaa acccacctgc ctccacggga atggcaaatc cccgcaaaag
     1681 caaagccgca tcccgcaaca aagaactgtc gggctgcagg cgattggcat tcagaaaaac
     1741 ctgcatggcc aggccggaag tcatgccgct ggtaaagggt gctttcaccg aatcgtacca
     1801 gggttgctgc cagtgaaaaa tgaacaaagc atgatcatcc ttccgctcca tattttgctg
     1861 cagccatgat acacag
//
LOCUS       DATIQF010000514         1842 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_297418,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000514 DATIQF010000000
VERSION     DATIQF010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297418"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1606)
                     /locus_tag="VLL95_08500"
     CDS             complement(<1..1606)
                     /locus_tag="VLL95_08500"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSR38940.1"
                     /translation="MLVDRKKVTEQIQQTTFDICIIGGGATGAGCALDAASRGFSVLL
                     VEKEDFGSATSGKSTKLIHGGVRYLEQAIKKLSIGQFRMVRKALQERNTLLRIAPHLT
                     RRLPLITPCRNWLEGLYYFVGLLLYDRMSGCSKMGQSKLLSKKRAVDIIPTLNQNHLF
                     SAVLYYDGQLDDLRFNWALVESAMAHGAIAMNHASVTSFTKDSNGRLQTAEMVDHLLG
                     AKFKVQARCFINATGPFADPVRQMANEKAESRIRVSSGVHVLLPQKMMPSHAAMLIPK
                     TADGRLIFAIPYQDEVLVGTTDEEALLTDQEFGPTEPELDFLLEHVNDYLDINASKAD
                     VLAGFGGLRPLVKKAGSKTKDLVRDHEVEVDRQSGLISILGGKWTTYRLMAKDTVDAA
                     TVMLGSHVPCITHQITLQGGEGYQHLDPATFVDQCGFSQKIIHHLISKYGDKTVMIIA
                     LAEKDPSLCQPVLNPLPYTYAELHYVITQEMAYTVKDVIGRRWGVQLVNWEHALALIE
                     PVGAYMKTQFQWNQSEEQLYIAHYKNE"
BASE COUNT          439 a          453 c          451 g          499 t
ORIGIN      
        1 attcattttt gtaatgtgca atgtacagtt gttcttctga ttgattccat tggaactgcg
       61 ttttcatgta ggcgccaacg ggctcaatca atgccagggc gtgctcccaa ttaacaagct
      121 gcacacccca gcgcctgcca ataacatctt ttaccgtata agccatttct tgtgtaatga
      181 catagtgcaa ttcggcatag gtgtatggaa gagggttcag aacaggctgg cacaacgaag
      241 gatctttttc tgccaatgca atgatcatga ctgttttgtc gccatacttg ctgatcaggt
      301 gatgaatgat tttttgagag aacccgcatt gatccacgaa tgtggcaggg tcaagatgct
      361 gatagccttc ccctccctgg agggtaattt gatgtgtgat gcatggcaca tgggaaccta
      421 acattacagt cgcggcatcc acggtatctt ttgccatcag ccggtaggta gtccacttcc
      481 cgcccagtat gcttatcagg ccggattgcc tgtccacttc cacctcatga tcacgaacga
      541 ggtccttggt tttgctgccg gctttcttta ccaaagggcg cagtcctcca aatccagcca
      601 gcacatccgc tttgctggca ttgatatcga ggtagtcatt tacatgttcg agcaggaaat
      661 ccaattccgg ttcagtaggt ccgaattcct ggtcggtcag gagcgcctct tcatctgtgg
      721 tgcccaccaa cacttcgtcc tggtaaggaa tggcgaagat gagacgaccg tctgctgttt
      781 tcggaatgag catggcagca tgtgagggca tcattttttg gggcagcaaa acatgaacgc
      841 cactgctcac cctgatgcgt gactctgctt tttcattggc catttgccga acaggatcgg
      901 cgaaagggcc ggtagcattg ataaagcagc gagcttgcac cttaaatttt gcaccgagca
      961 ggtggtcaac catctctgcc gtttgcaaac ggccgttgct gtcttttgta aatgaagtta
     1021 ctgatgcatg gttcattgct atggcaccat gcgccatagc cgattccacc aatgcccagt
     1081 taaagcgcag atcgtcgagc tgaccatcat aataaagaac ggcagagaaa agatggtttt
     1141 ggtttaacgt aggtattatg tcgactgccc ttttcttaga tagtaatttg ctttggccca
     1201 tttttgaaca tccactcatg cgatcgtaca acaaaagacc aacgaaatag taaaggcctt
     1261 ccagccagtt gcgacaggga gtgatcaatg gcagccgcct ggtaagatgt ggcgcaatgc
     1321 gcaaaagcgt gttgcgttcc tgcaaggctt tgcgcaccat cctgaactgc ccgatactca
     1381 gttttttaat ggcctgttcg aggtagcgca ctccaccatg aatgagcttg gtactcttgc
     1441 ctgaggtagc ggaaccaaaa tcctctttct cgacgagcag cacgctgaat cccctgctgg
     1501 ctgcatccaa agcgcacccg gccccggtag ctccgccgcc gataatgcag atgtcgaagg
     1561 ttgtttgttg aatttgttct gtgactttct tccgatcaac cagcataaaa aaaccatcat
     1621 agttgatgat ggttttaaag atagttggga attgaatcgg gatgcgtcat tctttcaacc
     1681 accgcagtgt tttgcgtacg ccatccgcgg tcattatttc aacgtagtac aagccggtag
     1741 ccagcaacgc cacaggaatg cggaggttat tgttgcccgg caacaaatgg ctttgttgct
     1801 ggctgatcaa tttgccagcc ctgtcgtaaa tggtggcttt ta
//
LOCUS       DATIQF010000515         2177 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_206364,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000515 DATIQF010000000
VERSION     DATIQF010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206364"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..850
                     /locus_tag="VLL95_08505"
     CDS             <1..850
                     /locus_tag="VLL95_08505"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR38941.1"
                     /translation="SFGPYTDAFADTSLRQGSVYASLMYQHKNWNLEGGIRWNNHQRY
                     GNNATFTFNPSYSINQQWRVFGSIASGFKAPSIYQLYSAFGNKDLDAEKSINYELGVQ
                     QGNARWSNRLVYFYRDIQNGIDFDNINYSYFNISQQRVQGLELESKWQLTKALQFTLN
                     YTYLLPNETVQSRLTFKDTSYNYLLRRPRHQVHATLGWQITEHLFASVNAKYVSDRYD
                     VGGYKKPDVKLDAYLLLGAYAEYRLGKWGKLFVDCQNLTNKEFFDISGFNSIPFMMQA
                     GFNVQL"
     gene            863..1075
                     /locus_tag="VLL95_08510"
     CDS             863..1075
                     /locus_tag="VLL95_08510"
                     /inference="COORDINATES: protein motif:HMM:NF025733.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich CWC family protein"
                     /protein_id="HSR38942.1"
                     /translation="MHETKTCPRCQQPFTCKPCHISACQCNGIKLTEEEKAFIADRYD
                     DCLCINCLQQLKDKYVFFKEKYRIGQ"
     gene            1192..>2177
                     /gene="xseA"
                     /locus_tag="VLL95_08515"
     CDS             1192..>2177
                     /gene="xseA"
                     /locus_tag="VLL95_08515"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HSR38943.1"
                     /translation="MTRRLPLSALAALIEQTVEQVFADESFWIIAEIADVKKYEAKRW
                     CFLKFIEKKKDQVFAEMQGIFWANAYQEIIRFERSTGQVFTSGIEISCRVQVKFHPRY
                     GLKLEVQEIDTAFTLGQIELQRQQTLDQLLRKYPSQIKLEDGVYLTPNKQLKWPKVMQ
                     RVALIGAEDSDGHLDFLQELLHNQYGYVFKVSSFHSSVQGQQAVADLCAQLDTVHHIA
                     PAFDVVAIVRGGGSNTDFAAFDDFEVARRIAFFPIPVFTGIGHDRNTSIADMMAWQFK
                     TPTKAASAIVDTALHFESQLMLLKDQLSDSWLARTQEYAQQLKYWDSSMQHMV"
BASE COUNT          583 a          544 c          539 g          511 t
ORIGIN      
        1 cagttttggt ccttacaccg atgcgtttgc tgacacctcc ctgcgccagg gatcggtgta
       61 tgcatcactc atgtaccagc ataagaactg gaacctggag ggaggcatcc gctggaacaa
      121 ccaccagcgc tatggcaaca acgccacttt taccttcaat ccttcttaca gcatcaacca
      181 gcaatggcgg gtgtttggca gcattgccag cggattcaag gcgccgtcca tttaccaact
      241 ctattctgcc tttggcaaca aagacctgga tgcagagaaa tccatcaact acgaattggg
      301 tgtgcagcag ggcaatgcca ggtggagcaa ccgactggtg tatttctacc gcgacattca
      361 aaacggcatt gacttcgaca acatcaatta cagctatttc aacatcagcc agcaacgagt
      421 gcaggggctg gaacttgaaa gcaaatggca gttgacgaaa gcattgcaat tcactttgaa
      481 ctacacttac ctgctaccga atgaaacagt gcaaagccgt ctcactttca aagacaccag
      541 ctacaactac ctgttgcgcc gcccccgcca ccaggtgcac gctacacttg gctggcaaat
      601 cacagagcat ttgtttgcca gtgtaaatgc gaaatatgta agcgaccgct atgatgtagg
      661 tggatacaag aagccggatg taaaactgga tgcttacctg ttgctcggcg cttatgctga
      721 ataccgtttg ggcaaatggg gcaagctgtt cgtggattgc cagaacctca ccaacaaaga
      781 gtttttcgac atcagcgggt tcaacagcat ccccttcatg atgcaggcag gattcaatgt
      841 gcagttgtaa atcattgaac acatgcacga aacaaaaacc tgtccccggt gccagcagcc
      901 ctttacatgc aaaccgtgcc atatcagtgc ctgccaatgc aacggcatta agctcaccga
      961 agaagaaaaa gcattcattg ccgatcggta cgatgactgc ctttgcatca actgcctgca
     1021 gcagttgaaa gacaaatatg tcttcttcaa agagaaatac cggattggtc agtaactaat
     1081 cgcaactgaa ggttgttcaa gaaggaggat tgggattgcc tgttgatttc gcctggttga
     1141 aggttgtttt caggcagtcc caagcctcct tttttgtagg tttgacaacc tatgacccgc
     1201 cggcttccat tatccgcatt ggctgcactc attgagcaaa ctgtagaaca ggtatttgcc
     1261 gatgagtcgt tttggatcat tgcggaaata gcggatgtaa aaaaatacga agccaagcgt
     1321 tggtgctttc tcaaattcat cgaaaaaaag aaggaccagg tatttgccga gatgcagggc
     1381 atcttctggg ccaatgccta ccaggagata attcgctttg aaagaagcac ggggcaggtg
     1441 tttaccagcg gtattgagat cagttgccgg gtgcaggtga agtttcaccc gcggtatgga
     1501 ttgaaactgg aagtgcagga aattgatact gctttcaccc tgggacagat agaactgcaa
     1561 cggcagcaaa cccttgacca actgctgcga aagtatcctt cgcaaataaa gttggaagat
     1621 ggtgtttacc tgacccccaa caagcaactg aaatggccca aagtgatgca acgggtggcg
     1681 ttgataggcg ctgaagacag cgacggccac ctcgattttc tgcaagagct gctccacaac
     1741 caatatggtt atgtgttcaa agtgagcagc tttcactcca gcgtgcaggg gcagcaggcc
     1801 gttgccgatt tgtgtgcgca gctcgacacc gtgcaccata tcgcaccggc atttgatgtg
     1861 gtggccattg ttcggggcgg tggctccaat accgactttg ccgcttttga tgattttgaa
     1921 gtggcccggc gcattgcctt ctttcccatc ccggtgttta ccggcattgg ccacgatcgc
     1981 aataccagta ttgctgacat gatggcctgg cagtttaaaa cacccaccaa ggcggcctcc
     2041 gccattgtag acactgcact gcatttcgaa agccaattga tgctgctgaa agatcaatta
     2101 tccgatagct ggctggcccg gacacaggag tacgcacaac aactgaaata ctgggacagc
     2161 agtatgcagc acatggt
//
LOCUS       DATIQF010000516         1974 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_297421,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000516 DATIQF010000000
VERSION     DATIQF010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1974
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297421"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..630
                     /locus_tag="VLL95_08520"
     CDS             <1..630
                     /locus_tag="VLL95_08520"
                     /inference="COORDINATES: protein motif:HMM:NF012945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38944.1"
                     /translation="ETNVGAGLPVIGTLHDLVKSGDVVHRIEAVLSGTLNFVFNHYDG
                     SRPFAEVVRQAQAEGYTEPDPRLDLGGTDVMRKILILAREAGYPMEMEDITNNGFLPA
                     PCMEGSVEDFYQAMAQYESHFAGLLEAARAKGCKLKFVATFNEGKASVGLQHIEPQSD
                     FYHLYGKDNIVLFYTNRYPEQPLVIKGAGAGADVTASGVFADIIRVISH"
     gene            641..1564
                     /locus_tag="VLL95_08525"
     CDS             641..1564
                     /locus_tag="VLL95_08525"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: protein motif:HMM:NF002288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006566 - threonine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HSR38945.1"
                     /translation="MSEKLTILAPGTVANMVCGFDVLGFALEDPCDEIDIALIPEKRI
                     IIQPDPVYQLPTDPEKNVAGAALLAMLDAIEEPIGFDITIRKHIKPGSGIGSSAASAA
                     GAVVAANHLLNHRFSKEELVQFAMFGEKVASGVKHADNIAPCIYGGITLIRSIFPLDV
                     VALPAPNLHVTIVHPQIEVRTADARAILKQNVLLKDAIKQWGNIAGLVAGIIQNDLPL
                     IGRSLQDHIIEPVRSILIPGFDEIKQRSMAAGALGGGISGSGPSVFMLSADKATALAV
                     EKEMQAVFARIGIDHHTYVTTINPQGVKLKS"
     gene            1572..>1974
                     /locus_tag="VLL95_08530"
     CDS             1572..>1974
                     /locus_tag="VLL95_08530"
                     /inference="COORDINATES: protein motif:HMM:NF026171.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38946.1"
                     /translation="MQYYSTNKQSEPVDFRSATISGQPPDKGLYYPSAIPSVSSLLEQ
                     PLASWDRTELSFRIMQPYVGQTIPDERLYQIIRETIDFPFPLVQVTPDIFSLELFHGP
                     TLAFKDVGARFMSRCLAYFNQGNSKQVTVLVA"
BASE COUNT          487 a          540 c          491 g          456 t
ORIGIN      
        1 gaaacaaacg tgggcgctgg tctgccggtg ataggcaccc ttcatgacct ggtgaaaagt
       61 ggcgatgttg tacaccgcat agaagctgtg ctgagtggta ccctcaattt tgtattcaat
      121 cattatgatg gcagccggcc atttgctgaa gtagtaagac aggcacaagc cgaaggctat
      181 acagagcccg atccgcgact ggaccttggc ggcactgatg tgatgcgcaa gatcctgata
      241 ctggcccgtg aagcagggta ccccatggaa atggaagaca tcaccaacaa tggatttctt
      301 ccagcgcctt gtatggaagg cagtgtggaa gatttttacc aggccatggc gcaatacgaa
      361 agccattttg ccggcttgct ggaggctgcc cgtgccaaag gttgcaagct caaattcgtt
      421 gctactttca acgaaggcaa ggcttcagtg ggactgcaac acatagagcc ccaatccgat
      481 ttctaccatt tgtatggcaa ggacaacatc gtgctgttct acaccaaccg ttatcccgaa
      541 caaccgttgg tgataaaggg agccggcgcc ggcgctgacg ttactgcctc cggtgtattt
      601 gccgatatca ttcgcgtcat cagccattaa aagaaaaaag atgtcagaaa aattgaccat
      661 actggccccc ggcaccgtag ccaacatggt gtgcggcttt gatgtactgg gctttgcact
      721 cgaagatccc tgcgatgaaa tcgacattgc cctgattcct gaaaagcgca tcatcattca
      781 gcccgacccg gtgtaccagt tgcctaccga ccctgaaaag aacgtggctg gtgccgcgct
      841 gctggccatg ctggatgcca ttgaagagcc cataggattc gacattacca tccgcaaaca
      901 catcaaaccc ggcagtggca tcggttcctc tgctgccagc gctgccggag cggtcgtggc
      961 tgccaatcac ctgctcaacc accgtttcag caaagaagaa ctggtgcagt ttgccatgtt
     1021 tggcgaaaaa gtagccagtg gcgtaaagca tgccgacaat atagcacctt gtatttatgg
     1081 cggtatcacc cttattcgct ccatttttcc tttggatgtg gtggcgctgc ccgctcccaa
     1141 cctgcacgta accattgtgc atccgcaaat agaggtacgc actgccgatg cacgggccat
     1201 cctgaagcaa aacgtgttgc tgaaagacgc catcaaacaa tggggcaata ttgccgggtt
     1261 ggtggccggc atcatccaga acgacctgcc gctcattggc cggtcgctgc aagaccatat
     1321 catcgagccg gttcgcagca ttctcattcc cggctttgac gaaatcaaac aacgcagcat
     1381 ggcagccggt gccctcggtg gcggcatatc cggatcaggc ccttctgtat ttatgctgag
     1441 tgctgacaaa gcaaccgcat tggccgttga aaaggaaatg caggctgtgt ttgcccgcat
     1501 tggcattgat catcacacct atgtcactac catcaacccg cagggtgtaa aacttaaaag
     1561 ctgatcgaac catgcaatac tacagtacca ataaacaaag tgaacccgtt gatttcaggt
     1621 cggctactat cagtggccag ccacctgaca aagggttgta ctatccctcc gccatcccgt
     1681 cagtttcttc cttattagag cagccgctgg cttcgtggga cagaacagaa ctttcgttca
     1741 ggatcatgca gccttatgtg ggccaaacca ttccggatga gcggctttac cagatcatca
     1801 gggaaaccat tgacttccct ttcccgctgg tacaagtcac cccggatatt ttttccctcg
     1861 aattatttca cggtcctacc cttgctttca aagatgttgg cgcccggttc atgagccgtt
     1921 gcctcgccta tttcaaccaa ggaaacagca aacaagtgac ggtgctggta gcca
//
LOCUS       DATIQF010000517         1697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_251667,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000517 DATIQF010000000
VERSION     DATIQF010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251667"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            624..1637
                     /locus_tag="VLL95_08535"
     CDS             624..1637
                     /locus_tag="VLL95_08535"
                     /inference="COORDINATES: protein motif:HMM:NF023431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3500 domain-containing protein"
                     /protein_id="HSR38947.1"
                     /translation="MKPLLLLLLLPLHMLAQDKKLDKAATTNAQAFVNALNPEQKAIA
                     LFPFAEAHRFSWHYVPPTGSPRTGMAVKDMDSQQKTLFYALLQSFLSPAGYQRTQNIM
                     SFEYVLKEMEPNSKSRIPENYFVSIYGHPHKDSVWGWKFTGHHLALNFTMVNGQLAFT
                     PFFFGSNPGEIKEGPKKGMRIIVEEEDLAFELVNSLTEAQRKTALFRTEPFADIVTAN
                     APHATAPEMAGILLKDLANDQQQLVNKILVAYLASMPSRVAHTRMNRLATENKDEIRF
                     AWAGGLEKGQPHYYRIQGKTFVVEFDNSQNNANHIHEVWRDFFGDYSEDLLKEHLRRD
                     HQH"
BASE COUNT          437 a          490 c          382 g          388 t
ORIGIN      
        1 cgcgaccacc agcattgatt tccgttgcaa tggttcgtgt cacacgaacc atttccgtca
       61 cagccgtgtc cctgccccgc aatccccggc gaagacctgg tgtttttatt atctgcgaaa
      121 atctgcggga actgcgggaa aaaaatctcc cgctgaatgc gcagatcagg taccgcagat
      181 ttcacattca ttctatccct ccatggcggt tacgggcagg taggtcctca tccgccataa
      241 ggaacacagg tgacaggaac accaacagcg gcggtattca acccgagttc cccctttctt
      301 atttcttatt tgtagttcct tatttcttat tcaatcactt cgtgccaacc ttgtcgttgc
      361 cacgcaggaa acggcgataa ccggaaaagc acaagtaccg gggactgttg gtgaaaacac
      421 caacagcgga ggtaaatggt gtggtttctt atccgcgaaa acccgcacag tcagtggcat
      481 cagtgtccta tcccatgctg atatcacagt cgtatccgtc tccaggtctt gtttcgtgta
      541 ctacccgcct gtccttttgg aataaccgta cttgtatagg gaatcccgat atctttaata
      601 cttacccttc aaccctgctg tttatgaaac cattgctgct gctgttattg ttgccactgc
      661 acatgctggc acaggataaa aaactcgaca aggccgccac caccaatgcc caagcttttg
      721 tgaatgcatt gaaccccgaa caaaaagcga tagccctgtt cccttttgca gaagcccatc
      781 gcttcagctg gcattatgta ccgcccaccg gctcgccccg caccggcatg gccgtcaaag
      841 acatggacag ccaacagaaa acacttttct atgccttgct gcaatccttc ctgagccccg
      901 ccggctacca gcgtacgcaa aacatcatga gctttgaata cgtactgaag gaaatggaac
      961 ccaacagtaa aagccgcata cccgaaaact attttgtatc catctatggc catccgcaca
     1021 aagacagtgt atggggatgg aagttcaccg ggcatcacct ggcgctcaac ttcaccatgg
     1081 tgaacggtca actggccttt acgccgtttt tctttggctc caaccccggt gaaataaaag
     1141 aagggcccaa aaaaggaatg cgcatcattg tggaggaaga ggatctcgct tttgaactgg
     1201 tcaactcgct gaccgaagcg caacggaaaa ccgctttgtt caggaccgag ccattcgcgg
     1261 atatcgtgac tgccaacgca ccccacgcaa cggcacctga aatggcaggc atcctgctca
     1321 aagacctggc caacgatcag cagcagctgg taaacaagat ccttgtggcc tacctggcct
     1381 ccatgccttc tcgggtggca cacacccgca tgaatcgcct ggctacggaa aacaaagacg
     1441 agatccgctt tgcctgggcc ggtggtttgg aaaaaggcca accgcattat taccgcatcc
     1501 agggcaaaac cttcgtggta gaatttgaca attcccagaa caacgccaac cacatccacg
     1561 aagtgtggcg cgactttttt ggcgattaca gcgaagacct tttgaaagaa catttgcgcc
     1621 gcgaccacca gcattgattt ccgttgcaat ggtttccctc acacgaacca tttccgtgaa
     1681 caccagcagc ggcgata
//
LOCUS       DATIQF010000518         2230 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_38759, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000518 DATIQF010000000
VERSION     DATIQF010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2230
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38759"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..701
                     /locus_tag="VLL95_08540"
     CDS             <1..701
                     /locus_tag="VLL95_08540"
                     /inference="COORDINATES: protein motif:HMM:NF012788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38948.1"
                     /translation="FKDKVRQHPDNVNAGLLTYPVFQAADILIHRAGKVPVGKDQEQH
                     LEMARNFAQRFNYRYGNGETILPEPQAFNYSGGELIKILSLDGNGKMSKSENAMNTIY
                     LADEPELLRKKIMKAKTDQGPPEPYSQKPDYIQNLFTLMKLVSSPDTVARFEMDYNNS
                     SAGNVVIRYGDMKKQLAEDMIKFLEPVREKTNAMLADDHYLGNVMKQGRDKARASASE
                     TLQLVRKAVGMQYY"
     gene            836..1471
                     /locus_tag="VLL95_08545"
     CDS             836..1471
                     /locus_tag="VLL95_08545"
                     /inference="COORDINATES: protein motif:HMM:NF013843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxynucleoside kinase"
                     /protein_id="HSR38949.1"
                     /translation="MAKSKKPKHIAVAGNIGAGKTTLTELLSKHYRWIPQFEDVEHNP
                     YLNDFYEDMPRWSFNLQIYFLNSRLNQILEIQRGNETIIQDRTIYEDAMIFAPNLHDM
                     GLMSKRDFDNYFKFFETLRSMVQPPDLLIYLRASVPTLVGQIQKRGREYEENIRLDYL
                     KKLNEYYTRFIESYHEGPILVIDVDKNNFAENEEDLGEIIQRIDSQLFGLF"
     gene            complement(1565..>2230)
                     /locus_tag="VLL95_08550"
     CDS             complement(1565..>2230)
                     /locus_tag="VLL95_08550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38950.1"
                     /translation="PGPFTWNVKYKTSTCSTSVTVYQVATPNGSDYFPMTSNSWWTYI
                     FTDPAATPADTLYQLSTGKSATLTGGATFNLFTIEDPTFKDSSWYRKAGSDYFQLGDL
                     DLAGATDKPIIGEWIFLKDNVPGGSSWTSAEGSGSISGAPVKVRIKFDLLEKDVNVLV
                     GNRVFANTIKVKVTQQGQLAGATSWADVITYETWFAKGIGLINLAAAAPVYGFRVLKY
                     TVN"
BASE COUNT          631 a          595 c          505 g          499 t
ORIGIN      
        1 cctttaaaga caaggtgcgg caacaccctg acaacgtgaa tgccggcctg ctcacctacc
       61 ccgtgtttca ggcagccgac atcctcatcc accgggctgg caaagtgccc gtaggtaaag
      121 accaggaaca acacctggaa atggcccgca attttgccca gcgctttaat taccgctatg
      181 gcaatggtga gaccattttg cccgagccac aggcattcaa ctacagcggc ggcgaactca
      241 tcaaaatact cagcctggat ggcaatggca aaatgagcaa aagcgaaaac gccatgaaca
      301 ccatttacct ggccgatgaa ccagaactgc ttcgcaaaaa gatcatgaag gccaaaaccg
      361 accagggtcc gcccgaaccg tacagccaaa aaccggatta catccagaat ctctttaccc
      421 tgatgaaact ggtaagcagc ccggatacag tggccaggtt cgaaatggat tacaacaact
      481 cttccgccgg caatgtagtg atccgctatg gcgacatgaa aaagcaactg gccgaggata
      541 tgatcaaatt cctggagccc gtccgcgaaa agaccaatgc catgctggcc gatgaccact
      601 acctgggcaa cgtgatgaag cagggcagag acaaggccag ggccagcgcc tccgaaacac
      661 tccaactggt aaggaaagca gtgggcatgc agtattattg atgccggtta tatcctcctc
      721 cagaaaaaaa ctgccaactg ttgggagaaa aacacatttc cctaacttgt acccgccagc
      781 aacgggttgg cccaacacaa ctgattagta agtaataaat aagcactacc atcttatggc
      841 aaaatcaaaa aagccaaaac acattgctgt tgccggtaat atcggcgccg ggaaaaccac
      901 ccttaccgaa ttgctcagca aacattaccg ctggatcccg cagtttgaag atgtagaaca
      961 caacccctac ctgaatgact tctacgaaga catgccccgc tggagtttta acctgcagat
     1021 atacttcctc aacagccgcc tcaaccagat ccttgaaatt caacgcggca atgagaccat
     1081 catccaggat cgcaccattt atgaagacgc catgatcttt gcacccaacc tgcacgacat
     1141 gggcctgatg agcaagcgtg acttcgataa ctatttcaag ttcttcgaga ccctgcgcag
     1201 catggtgcag ccacccgatc tgcttattta cctcagggct tcagttccta ccctggtggg
     1261 gcaaatacaa aagcgtggcc gcgagtacga agaaaatatc cgcctcgatt acctgaaaaa
     1321 actgaatgaa tattacaccc gcttcatcga atcgtatcac gagggcccga tactggtgat
     1381 agatgtagac aaaaacaatt ttgccgaaaa tgaagaagac cttggtgaga tcattcagcg
     1441 catcgatagc cagttgttcg ggttgttctg acgattattt tccatccagg gaagcataaa
     1501 aaaaatcctg cagcatttac cgcaggattt ttatttggaa tctaatgagc gatctcttcg
     1561 tcgcttagtt gactgtatac ttgagaaccc ggaatccata caccggggct gccgcagcaa
     1621 gattgataag accaattcct tttgcgaacc atgtttcgta ggtgatcaca tcggcccagg
     1681 aggtggcccc tgccagctga ccttgttggg ttactttcac cttgatggta ttggcaaaaa
     1741 cgcgattgcc caccaataca ttcacatcct tttccagaag gtcgaatttg atcctgacct
     1801 tgaccggagc gccggatatg ctccctgagc cttctgcact cgtccagctg ctgccgccag
     1861 gaacattatc cttaaggaat atccactctc caatgattgg tttatcggtt gccccggcta
     1921 aatcgaggtc tcccaactgg aagtagtcac tacccgcctt tctgtaccag cttgaatctt
     1981 tgaaagtagg atcctcaata gtgaacaagt taaacgtagc tccaccagta agcgtggctg
     2041 actttccagt gctcaactgg tacaaggtat ctgccggcgt tgcagccgga tcagtgaaga
     2101 tgtatgtcca ccaactgtta ctggtcatgg ggaaataatc actaccgttt ggagtagcca
     2161 cctggtaaac cgtgacggaa gtactgcagg tactggtttt gtattttaca ttccaggtaa
     2221 atggcccggg
//
LOCUS       DATIQF010000519         4840 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_38766, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000519 DATIQF010000000
VERSION     DATIQF010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4840
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38766"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(128..1465)
                     /locus_tag="VLL95_08555"
     CDS             complement(128..1465)
                     /locus_tag="VLL95_08555"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: protein motif:HMM:NF006688.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HSR38951.1"
                     /translation="MQSYLIKNAAMVNEGRTISTDLLIKNGRIEKIAPTIDTNEKVIE
                     IDASGLHLLPGAIDDQVHFREPGLTHKGNIYTEAKAAVAGGTTSFMEMPNTIPNALTQ
                     ELLEDKYQIGARTSLANYSFFMGTSNDNADEVLKTNDKRKDVCGIKIFMGASTGNMLV
                     DNYLTLDRIFREAEVLIATHCEDEKVIKVNRQKMEGTELQPIHHPLVRDVECCFESSF
                     SAIQLAKKHNTRLHILHISTARELQLFTNMIPLKDKRITSEVCVHHLHFTSDDYARLG
                     YKIKCNPAIKSSENKEALWAALNDDRLDVIATDHAPHLLSEKEPPYDHAHAGLPLVQH
                     SVLLMLKYVKEGKISLEKMVHKMSHAVAECFQIAERGYIREGYFADLVLVDLNGNTVV
                     TPNNLLYKCGWSPMEGETFPAHITHTFVNGHLVYENGRFDESQQGMRMRFDRD"
     gene            1509..3233
                     /locus_tag="VLL95_08560"
     CDS             1509..3233
                     /locus_tag="VLL95_08560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38952.1"
                     /translation="MQNRNSLLVAIAFAMVVGIFPATTLAQTTYLPLWSKESWLLDRL
                     EIKAQRNNDLNLSTVKPYMRKAYIAVADSFYAGLLRGENNANLSQVDQYNLVRMMANS
                     SEFSSFSSDTMNGRFSKKSAGTFYKTKANMLEVDKQGFYMVINPAMSFQYGKENENDD
                     GVYFASYGASGRGLIGKSFAFQFFATGNRENGPLPLRKYYDQHKALPGVGFFDTLSNG
                     KGFSYFEFRGSVNTHITKYINVQFGYDQQFIGNGYRSLLLSNFSANHLFLKLNTRIWK
                     LNYTNLYMQLSPTASRSLNDFYQNKYASMHHLGLNATKWLNIGFFESVIFGREGRYDF
                     SYLLPVIFLRSIEQQNGSPDNANIGFDIKANIGKKGQVYGQVIIDEFLKDEVSGGDYW
                     WGNKQGFQLGAKYVDAFGIKNLDLQGEFNQVRPFTYQFRDTTGNYTNHSQPLAHALGA
                     NVREVTGIVRYQPFNKLYLFARVNLWRQGLDSAGYNFGANPNELYLSVQQGGNRLRND
                     NYPMFSGKPADGLNASFTASYEWKENLFVELNAMYRRFEETDKPRATTTMVSVGFRWN
                     MFRRDYDY"
     gene            3253..>4840
                     /locus_tag="VLL95_08565"
     CDS             3253..>4840
                     /locus_tag="VLL95_08565"
                     /inference="COORDINATES: protein motif:HMM:NF025418.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule assembly Wzi family protein"
                     /protein_id="HSR38953.1"
                     /translation="MLKKLLSYTLSCLMVASTFGQTTYVPLWAKESWLLDRMEIKAGT
                     NNDLNLSTVKPYMRKAYVAVADSFRLQLQRGINTARLTAIDEYNLDRFQANSSEFSVF
                     DTVSMPQWKSKKDFLGFLWPTKGNMIEVDQKDFYLSINPAINQQQSVESDFSDRVFVN
                     SKGLVARGLIANKIGFHFLATDNQEQGPLQFREFVDSNQVVPGVGFWKRFKQTKGVDY
                     FDARGSVTWNVTKYVNMQFGYDQQFIGNGYRSLFFSNFSPNSLFLKFNTRIWKLNYTN
                     LFTEMFPFPMFRGDILLDRKYVASHHLSINVLPWLNVGAFESMVFGTPNTFKMSYLQP
                     IIFVNTLVARNNGTNNANIGFDFKANALHHVQVYGQYLLDNLDGNEGRTGKDWWGNRH
                     AYQLGVKYVDVLGVKNLDVQAEYNQVRPFTYSGEDTVSSYTHYRQPLAHPMGGNVREV
                     IGIVRYQPLKKLYLFGRINYWKQGLDSARYNFGSRPLQPHTSVADGGRRLREDGFPMF
                     AGIQAQGLNGSFTASYELKEN"
BASE COUNT         1219 a         1143 c         1203 g         1275 t
ORIGIN      
        1 gggccagcca ctgcgcccca cccgatgttt gtgtgaagtt gagcgcattg aaaaccgact
       61 gctcctcttc ggcatgaaag atggcaaggt cctgcagggt tgttttatca atattcattg
      121 gttggcctta atcgcggtcg aaccgcatac gcatgccctg ttgagattca tcaaagcgtc
      181 cgttttcata aaccaggtgc ccattcacaa atgtgtgggt gatatgagcg gggaatgttt
      241 ctccttccat cgggctccag ccacatttgt acagcaggtt attgggtgtc accacggtgt
      301 tgccattcaa atcaaccaac accaggtcgg caaaatagcc ttcccgtata tagccacgct
      361 ctgctatttg gaagcactca gctactgcat ggctcatctt gtgcaccatt ttttccaggc
      421 tgatctttcc ttcttttaca tacttcagca tcagcagcac tgaatgctgc accaacggca
      481 agccggcatg ggcatgatcg taaggcggtt ctttttcact caacaggtga ggagcgtggt
      541 ccgtagcaat aacgtcgagc cggtcatcat tcaaggcagc ccacaatgct tccttgtttt
      601 cagaggattt gatggcagga ttgcatttta ttttataacc cagccgggca taatcgtcgg
      661 aggtgaaatg caaatggtgt acacacactt cgctggtaat tcttttgtcc ttcagcggga
      721 tcatgttggt gaacaactgc aattcgcggg ccgtgctgat gtgcaggatg tgcaagcggg
      781 tgttgtgttt tttggccagt tgaatggcgc tgaagctcga ttcaaaacaa cattctacat
      841 cgcgtaccaa aggatggtga atgggctgca attcggtgcc ttccattttt tgcctgttca
      901 cttttatcac cttttcatct tcgcagtggg tggcgatgag tacttcggcc tctctgaaaa
      961 ttcgatcaag cgtcaggtaa ttatctacca gcatgttgcc ggtggaagcg cccatgaaaa
     1021 ttttgatgcc gcatacatcc tttcgcttgt cgttggtttt gagtacttca tcggcgttgt
     1081 cgttgctggt gcccatgaag aaggaataat tggccagcga agtgcgtgcc ccaatctggt
     1141 atttgtcttc cagcaattcc tgtgtcagcg cattcggaat ggtattcggc atttccatga
     1201 atgaggtagt gccgccggct actgcggctt tggcttcggt ataaatattg cctttgtgcg
     1261 taaggcccgg ctcacggaaa tgcacctggt cgtctatggc gccgggcaac aggtgcaaac
     1321 cactggcatc aatttcaatc accttttcgt tggtgtcaat cgttggcgca attttttcga
     1381 tgcggccgtt ttttatcaac aggtctgtag aaatagtgcg gccctcattg accatggcag
     1441 cattcttgat gaggtaactt tgcatatctt gttctttatt aatccatcaa attcaaccaa
     1501 tatcaggcat gcaaaatagg aattccctgc ttgttgctat tgccttcgct atggtagtgg
     1561 gaatttttcc tgccaccaca ctcgcacaaa caacctacct gcctctctgg agcaaagaga
     1621 gttggttgct cgacaggctt gaaattaaag cacaacgcaa taatgacctc aacctgagta
     1681 cggtgaagcc atatatgcga aaggcttaca tagcggtggc ggattcattt tacgccgggt
     1741 tgctgcgggg agaaaacaat gccaatctca gccaggtaga ccagtacaac ctggtgcgta
     1801 tgatggccaa tagcagcgag ttctcttcct tttcatcaga tacgatgaat ggccgcttca
     1861 gcaaaaaatc agccgggact ttctacaaaa ccaaggccaa catgctggaa gtagacaagc
     1921 aaggattcta tatggttata aatccggcaa tgtcttttca atacggcaag gaaaatgaaa
     1981 acgacgatgg cgtgtatttt gcttcctatg gcgcatcggg cagaggactg atcggcaaat
     2041 ctttcgcgtt tcaatttttt gcaaccggca accgcgaaaa cgggcctttg ccattgagga
     2101 aatattacga tcagcacaag gctttgcccg gggttggctt ctttgacaca ctgagcaatg
     2161 gaaagggatt cagctatttc gaatttcggg gcagcgtcaa tacccacatc accaaataca
     2221 tcaatgttca gtttgggtat gatcagcagt ttattgggaa tgggtatcgt tcattattgc
     2281 tgagcaactt cagcgccaac catcttttcc tgaaactgaa tacgcggatc tggaaactga
     2341 actacaccaa cctgtacatg cagttgtcgc ccacggcaag ccgcagcctc aacgattttt
     2401 accaaaacaa gtatgccagt atgcaccacc tgggcctgaa tgctaccaag tggttaaata
     2461 ttggattctt tgaatcggtc atctttggac gagaaggccg gtatgatttt tcctacctgc
     2521 tgcccgtaat ttttctgcgc agcatagagc aacaaaacgg aagccctgac aatgccaaca
     2581 ttggcttcga tataaaagcc aacattggaa aaaagggcca ggtctatggc caggtgatca
     2641 ttgatgaatt cctgaaagac gaagtttcgg gtggcgatta ctggtggggc aataagcagg
     2701 gctttcaatt gggtgccaag tatgtggatg cctttggcat taagaacctt gacctgcagg
     2761 gagagtttaa ccaggtccgg cctttcacct accagttcag ggataccacc ggcaactaca
     2821 ccaaccattc gcaaccgctg gcccatgccc tcggcgccaa tgtgcgtgaa gtgaccggca
     2881 ttgttcgtta ccagccattc aacaaactgt atttgtttgc cagggtgaac ctgtggcggc
     2941 aggggctgga tagtgccggg tacaattttg gtgccaatcc caatgaattg tacttgtcag
     3001 ttcaacaagg aggcaaccgt ttgagaaacg acaactaccc catgttttcc ggcaagcctg
     3061 cagatggttt gaatgcctct ttcactgcat catacgagtg gaaggaaaac ttgtttgtgg
     3121 aattgaacgc gatgtacagg cgctttgaag aaacggataa gccacgggca accaccacca
     3181 tggtttcggt agggtttcgg tggaatatgt tcagaagaga ttatgactac taagactgca
     3241 taaaatttca ttatgctgaa aaagctatta tcctacacac tgagttgcct gatggtggct
     3301 tccacttttg ggcaaaccac atatgtgccg ctttgggcga aagaaagctg gctgcttgac
     3361 cgaatggaaa taaaggccgg caccaacaac gatctcaacc tgagcacggt gaagccatac
     3421 atgcgaaagg catacgtggc cgtggccgat tcatttcgtt tgcaattgca gcggggcatc
     3481 aatactgcca ggctcactgc tatcgatgaa tacaacctcg atcgtttcca ggcgaacagc
     3541 agcgagttca gtgtgttcga caccgtatct atgccacaat ggaaaagcaa aaaggatttc
     3601 cttggtttcc tgtggcctac caaaggcaat atgattgagg tggatcagaa agatttttat
     3661 ctcagcatca atcccgctat taatcagcaa caaagtgtgg aatccgattt ttcggaccgg
     3721 gtgtttgtaa acagcaaggg attggtggca agaggtttga tcgccaataa gatcggtttt
     3781 catttcctgg ctaccgacaa ccaggaacag gggccgctgc agtttcggga gtttgtcgat
     3841 tctaaccagg tggtgcccgg tgtgggcttc tggaagcgtt tcaagcaaac caaaggggtc
     3901 gattattttg atgccagggg cagtgtgacc tggaatgtga cgaagtacgt gaacatgcag
     3961 tttggctatg atcagcaatt cataggcaat ggataccgca gtttgttctt cagcaatttt
     4021 tcgcccaaca gtttgttcct caaattcaac acccggattt ggaaactcaa ctatactaac
     4081 ctcttcacgg agatgttccc gtttcccatg ttccgtggcg atatcctgct cgatcggaaa
     4141 tatgtggcca gtcatcacct gagcatcaat gtgctgccat ggctgaatgt gggggctttt
     4201 gaatccatgg tatttggtac tcccaatacc ttcaagatgt cctacctgca acccatcatt
     4261 ttcgtcaata cactggtggc acggaacaat ggcaccaaca atgccaacat tggttttgat
     4321 tttaaagcca atgccctgca tcatgttcaa gtgtatggtc aatacctgct cgacaacctg
     4381 gacggcaacg aagggcgtac cggaaaagac tggtggggaa accgccatgc ctaccagctg
     4441 ggcgtgaaat atgtggatgt actgggtgtg aaaaacctgg atgtgcaggc agaatacaac
     4501 caggtgaggc catttacgta ttcgggcgaa gacaccgttt cttcttacac acattatcgt
     4561 caaccccttg cgcaccctat ggggggcaat gtgcgggaag tgattggcat tgtgcgttac
     4621 cagccattga aaaaactcta cctttttgga cggatcaact actggaagca gggacttgac
     4681 agtgcccggt acaattttgg ttccaggcct ttgcagccgc ataccagcgt ggccgatggc
     4741 ggacgcagac tgcgggaaga tggttttccc atgtttgcag gcatccaggc ccaggggctg
     4801 aacgggtctt tcaccgcgtc ttatgaacta aaagaaaacc
//
LOCUS       DATIQF010000520         6784 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_8586, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000520 DATIQF010000000
VERSION     DATIQF010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6784
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8586"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..972)
                     /locus_tag="VLL95_08570"
     CDS             complement(<1..972)
                     /locus_tag="VLL95_08570"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF008277.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HSR38954.1"
                     /translation="MKNLLFLSMCLLMLACKSNEGKESNSAANENAAISVADWGTLEG
                     NAVKLYTLANRQGTVVSITNYGGIVTSWTTPDKQGNKSNVVLGFDSLAGYLADPPYFG
                     AIIGRYANRIGNAWFRIDTTEYQLAANNGANHLHGGNKGFDRVVWEAQPADSGATLTL
                     RYLSKDGEEGYPGNLQVTVVYTLTDDNELVIDYTAETDKPTPVNLTNHSYFNLKGDVS
                     NSILNHRLQLHADQYTPVDAGLIPTGELKPVKGTPFDFLSPHLIGERIAQVAGGYDHN
                     FVLNRKGNGLEPAAVLTDSISGRQLEVFTTEPGLQFYTGNFLNGSIKT"
     gene            1165..1761
                     /locus_tag="VLL95_08575"
     CDS             1165..1761
                     /locus_tag="VLL95_08575"
                     /inference="COORDINATES: protein motif:HMM:NF040120.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6498-containing protein"
                     /protein_id="HSR38955.1"
                     /translation="MIRKLASNYPLLLLLGFNLYFIWYYNRHPDGFKTLLLIYWFQSV
                     AIGFFTFLQLLTTPAEQTTGLITDQNTGKPIGKGCGALFFAVHYGIFHLVYLVFLVVR
                     DGGPIDFLLLKISFFIILVAELMEFIRKRKAISVNKVNQGFAFFLPYLRIIPMHIMIV
                     GAAFLNLSDVTIFLVLKTVADVGMYVLTNALYFQTNQS"
     gene            1774..3018
                     /locus_tag="VLL95_08580"
     CDS             1774..3018
                     /locus_tag="VLL95_08580"
                     /inference="COORDINATES: protein motif:HMM:NF021427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HSR38956.1"
                     /translation="MPEIVCPNCNFKFEPTDALRDEIQKELRGKMLEWQQQKEQDFQK
                     KEVAFKQQLEQKEKEAIAQLDAEKKKLAASLEESLRRQLSTDYEVKMKMLEEQVATNS
                     EKLKEARQKELEFLKKEQELLNKEQELEIKLQKMLLDERSKLTETIRQEESDKIKLKE
                     NEYQLKLKELEEKFEQQKKLAEEMKRKAEQGSMQTQGEAQELLLEELLRSTFPFDVVS
                     EVGKGVRGADCIQTVRNKLGQDCGKIIFESKRTQAFSQEWIEKLKADMRSQGADVAVI
                     VTQTLPKEMDRFGEKEGVWICTFPEVKALVHVLREGIIKVAAALKSQENKGDKMNMLY
                     AYLTSTEFSEQWNAIREGFISMRQSIVKEREQMEKLWKSREKHLEKVLLNMAHFKGSI
                     EGIAGQDFHLNLLEEGETPVED"
     gene            3050..4192
                     /locus_tag="VLL95_08585"
     CDS             3050..4192
                     /locus_tag="VLL95_08585"
                     /inference="COORDINATES: protein motif:HMM:NF025749.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4421 domain-containing protein"
                     /protein_id="HSR38957.1"
                     /translation="MTFFLNQAAKHKALFIMVLGLCVATALQAQVSADSLPERRGPVD
                     SFPHDPKYYRTYSGFLAGRVFLSRRYNNLRMSDNDNQQPSFRYTPNSPINLGIGATYN
                     WLTINLGFAFKFLNPGREDQGETKSIDFQSFIYGRRAILDLFAQFYKGFYIDPSQLQG
                     ATSPYIKADLRTGQLGFGYLYMTNWKRFSARAAMLQSERQLKSAGTWLIGLNSTYVAA
                     KSDSTMLPEMPGFEKLPSLRRVKSFEIGPSFGYAYNYVFLKRFFAMGMLTGHLNLNYA
                     KEYTNEGQNTRWTLGPNLSYKFAMGYSKPNWSAAITWTEYWPNFRTNNYSFLARNGIF
                     RVSWVYRFVPGPKIQRAFKPIDDIYQKSYERYKRLAAKLKPSSILK"
     gene            complement(4161..4790)
                     /locus_tag="VLL95_08590"
     CDS             complement(4161..4790)
                     /locus_tag="VLL95_08590"
                     /inference="COORDINATES: protein motif:HMM:NF013786.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HSR38958.1"
                     /translation="MPLFYSQTIDANTRLAIWEIAEDEAFFLEKVPVSRQLTHPHKRL
                     QHLAGRYLLQHLFPDFPLSLIQIADTRKPYLPEESHHFSISHCGQFAAAIVSTERRVG
                     IDIEEPTERILRIMPKFLSERERNEFTPHNIQLLVETATTLWSAKEAMFKWYGMGEVD
                     FRQHLQIDSIAFADETSGLLQATFAKHRDQPLQLPFRWWPTLVLSWVSV"
     gene            4842..5378
                     /gene="dcd"
                     /locus_tag="VLL95_08595"
     CDS             4842..5378
                     /gene="dcd"
                     /locus_tag="VLL95_08595"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR02274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009394 - 2'-deoxyribonucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HSR38959.1"
                     /translation="MILSDSRILEEMDKGTIVISPYDRDCLGSNSYDVHLGGTLATYR
                     DHILDAKKHNHIEYFEIPDEGFVLYPHVFYLGVTLEYTETHAHVPFLEGKSSTGRLCI
                     DIHATAGKGDVGFCGNWTLEISVKQPVKVYKGMPVGQLIYFPVDGEIEVKYNQKANAK
                     YSGQPNKPIESMMWRNKF"
     gene            complement(5564..6058)
                     /locus_tag="VLL95_08600"
     CDS             complement(5564..6058)
                     /locus_tag="VLL95_08600"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HSR38960.1"
                     /translation="MTNTYILNQQQIAVKLERLALEIAERNTDAQRIILAGIVHNGVL
                     MAAEIAKTLQQYFKGTIEIIEASLDKKHPTEVHLSATPDFGHAVLVLVDDVANSGRTL
                     TYALKPFLNYFPDKIQTCVLVDRTHKKFPVQPDYVGFSLATTIQEYIDVEIEDGVITG
                     AWVA"
     gene            6159..>6784
                     /locus_tag="VLL95_08605"
     CDS             6159..>6784
                     /locus_tag="VLL95_08605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38961.1"
                     /translation="MEYLAQALFVVMSAAAIWLFARNIGKIRKVILMGRDEAIETDRS
                     QRFNNLLLLAFGQKKMFKNPLVALMHFVIYAGFIIINIEVLEIVLDGVLGTHRLFAPV
                     LGGFYDFLINAFEMLALGVLLVCVVFLVRRNVIKLQRFISRDLDGWPRSDANYILVTE
                     IVLMSLFLTMNATEGVLQARGVAHYAEHPVGPFIISGALQPLFDSLSSG"
BASE COUNT         1720 a         1760 c         1714 g         1590 t
ORIGIN      
        1 ggttttaatg ctgccattca aaaaattgcc ggtgtaaaat tgtaatccag gttcggtggt
       61 gaacacttcc agttggcggc cgctgatgct gtcggtcaat accgcggcgg gctccaggcc
      121 gtttcctttc cgattcaaaa caaaattgtg atcgtaacca cctgctacct gcgctatgcg
      181 ttcgccaatc aaatggggtg acaaaaaatc aaagggcgtt ccttttaccg gtttcagttc
      241 tccggtggga ataagcccgg catccaccgg cgtatattga tcggcatgaa gctgcaaccg
      301 gtgattcaaa atgctgtttg acacatctcc cttcaggttg aaataactgt gattggtaag
      361 attcaccggt gtaggcttgt cggtttctgc ggtataatca atcaccaatt cattgtcatc
      421 tgtcagcgta taaaccaccg tcacttgcag gttgccgggg tagccctctt ccccatcctt
      481 gctcaaatat ctgagggtga gtgtggcacc gctgtccgca ggttgtgcct cccacaccac
      541 tctgtcaaat cccttgttgc cgccgtgcaa atgattggca ccattgttgg cggccagttg
      601 atattcggta gtgtcaatgc ggaaccaagc attgccgatg cggttggcat agcgaccaat
      661 gatggcgcca aaataagggg ggtcggccag gtagccggcc aggctgtcga agcccagtac
      721 cacgttgctt ttgttgccct gtttatccgg cgtggtccag gaggtgacga tgcccccgta
      781 attcgtgatg ctgaccactg tgccctggcg gtttgcaagg gtgtacaact ttacggcatt
      841 gccctccaaa gtgccccagt ctgccacgga tatcgccgcg ttttcgttcg cagcactatt
      901 actctctttc ccctcgtttg acttacatgc cagcatcagc aggcacatcg aaaggaatag
      961 caggtttttc atacgcttca ttttgaatgg ggagatcagc aaggtttgtt ttaccggacg
     1021 cttttaggat gctttcgaag ataaagcgga aatggcctca gccttcctgc cagaacagca
     1081 ttctctcttc ccaggatgtt gctcaatatt cacattgctc ccggggcagg catttatccc
     1141 cggcaaaaac ttagttttag cctgatgatc cgaaaactcg cctccaacta ccccttgttg
     1201 ttgctccttg gcttcaacct ctacttcatt tggtattaca accggcaccc cgacggcttc
     1261 aagaccctgc tgttgatcta ttggttccag agtgttgcca tcggcttttt cactttcctg
     1321 caattgctga ccacacccgc cgaacaaact accggcctga tcacggatca aaacacgggc
     1381 aagcccattg gcaagggttg cggcgccctt ttcttcgcag tacactacgg catctttcac
     1441 ctcgtgtacc tggtattcct ggtagtgcgt gatggcggac ccatcgattt tttgctgctg
     1501 aaaatttctt tcttcatcat cctcgtggca gagttgatgg aattcatcag gaaacgaaag
     1561 gcaatcagcg tcaacaaagt gaaccagggt ttcgcgtttt tcctgcccta cctgcgcatt
     1621 atccccatgc acatcatgat tgtgggtgcc gcttttttga atcttagcga tgttaccatt
     1681 tttttggtgc tgaaaacagt agccgatgtt gggatgtacg tgctcaccaa tgcgctctat
     1741 tttcaaacca accaatcata acatcataga actatgccag aaatagtttg tcccaattgc
     1801 aatttcaagt ttgaacccac cgatgccctc cgcgatgaga tccagaaaga actgcggggt
     1861 aaaatgctgg aatggcaaca gcagaaagaa caggatttcc agaaaaagga agtggccttc
     1921 aaacaacaat tagagcaaaa agaaaaagaa gccatcgcac aactggatgc agaaaagaaa
     1981 aagctggcgg cctcattgga agaaagcctg cgccgacagc tcagcaccga ctacgaagtg
     2041 aaaatgaaaa tgctggaaga acaggtggcc accaacagcg aaaagctgaa agaagcccgg
     2101 caaaaagaac tggagttttt gaagaaagaa caggaactgc tgaacaagga gcaggaactg
     2161 gaaataaagc tgcagaaaat gctgctggat gaacgcagca aactcaccga aaccatcagg
     2221 caggaagaat ccgacaaaat aaagctgaag gaaaatgagt accagctgaa gctgaaagaa
     2281 ctggaagaaa agtttgagca gcagaaaaag ctggcggaag aaatgaagcg caaagccgaa
     2341 cagggttcta tgcaaacaca gggcgaagcg caggaactgc tgctggagga actcttgcgc
     2401 agtacttttc ctttcgacgt ggtaagtgaa gtgggcaaag gcgttcgtgg cgccgactgc
     2461 atccaaaccg tacgcaacaa actgggacag gattgcggca agatcatttt tgaaagcaag
     2521 cgcacccagg ccttcagcca ggaatggatt gaaaaactga aagccgatat gcgcagccag
     2581 ggcgcagatg tggcggtgat cgtaacgcaa acactgccca aagaaatgga tcgttttggc
     2641 gaaaaagaag gcgtgtggat ctgcaccttc ccggaggtga aagcgctggt gcatgtgttg
     2701 cgggaaggca tcattaaagt ggccgccgct ttgaaaagcc aggagaacaa aggcgacaag
     2761 atgaacatgc tgtacgccta cctgaccagc accgaattca gcgaacaatg gaatgccatt
     2821 cgcgaaggat tcatcagcat gcggcagtcc atcgtgaagg aaagagagca aatggaaaag
     2881 ctgtggaaga gccgcgaaaa acacctcgaa aaggtattgc tgaacatggc gcatttcaaa
     2941 ggttccattg aaggcattgc cggacaggat ttccacctga atttgctgga ggaaggcgaa
     3001 actcccgtcg aggattagta ttttcaattc aaagacacca cacccgccag tgacattttt
     3061 tctaaaccag gcagccaaac acaaggcact gttcataatg gtgttgggtc tttgtgtcgc
     3121 tacggcgttg caggcacagg tgtcggcaga ttctcttccg gaaaggcggg gacccgttga
     3181 ttccttcccg catgatccca agtactaccg cacttacagt ggtttcctgg cagggcgtgt
     3241 gttcctttcg cgccggtaca acaacctgcg catgagcgac aacgataacc agcagccatc
     3301 ctttcgctac acccccaact cgcccatcaa cctgggcatt ggcgccacct acaactggct
     3361 caccatcaac ctggggtttg ctttcaaatt cctgaacccg ggacgggagg accagggaga
     3421 aacaaaatca atcgactttc agagttttat ttatggccgc cgcgccatcc tggatttgtt
     3481 cgcacaattc tacaagggct tttatataga tccttctcaa ctacaaggcg ccacctcacc
     3541 ctatatcaaa gccgacctta gaacaggcca attgggcttc ggctatttgt acatgaccaa
     3601 ttggaaacgg ttcagtgcac gggcggccat gctgcaatca gaaaggcaat tgaaatcggc
     3661 cggtacctgg ctgattggcc tcaacagtac ctatgtggcc gccaaatcgg attccaccat
     3721 gctcccggaa atgcccggtt ttgaaaagct gccttccctt cgccgggtga aatccttcga
     3781 gatcgggccc tcctttggct atgcgtacaa ctacgttttt ctaaagcgct tctttgccat
     3841 gggcatgctc accggccatc tcaatttgaa ttatgcaaaa gagtacacca acgaaggaca
     3901 aaacacccgc tggactttag gccccaacct ttcctacaaa ttcgccatgg gttacagcaa
     3961 acccaattgg tcggcagcga ttacctggac cgaatactgg ccaaatttca gaaccaacaa
     4021 ctattcattc ctggcccgca atggcatctt cagggtatcg tgggtgtacc gcttcgtacc
     4081 agggcccaaa atccaaagag cattcaagcc catcgatgat atctaccaga aaagttatga
     4141 gcgatacaaa cgcttagctg ctaaactgaa acccagctca atactaaagt aggccaccat
     4201 ctgaaaggca gctgtagtgg ctggtcccgg tgtttggcaa aagtagcctg cagcaggcca
     4261 ctggtttcat cggcaaatgc aatgctgtcg atttgcaggt gctgcctgaa gtccacttcg
     4321 cccattccat accacttgaa catagcttct ttggcgctcc acaaagtagt ggccgtttcc
     4381 accagcaact ggatattgtg cggtgtaaac tcgttgcgtt cccgctccga caaaaacttg
     4441 ggcatgatgc gcaaaatgcg ttcagtaggt tcttcaatat cgatgcctac cctacgctct
     4501 gtgctgacga tggcagctgc aaactggccg cagtgcgaaa tgctgaaatg atgtgattct
     4561 tcgggcaaat aaggcttgcg ggtatcggcg atctggataa gggacagcgg gaaatcgggg
     4621 aagaggtgct gcagcaggta acgcccggcc aggtgctgca ggcgcttgtg cggatgcgtg
     4681 agttgccggc tcaccggcac cttttccagg aaaaaggctt cgtcctcggc tatttcccaa
     4741 atggcaaggc gggtgttggc gtcaatagtt tgtgaataaa aaagcggcat aagacaaagg
     4801 caagtcgcat attgcgagca ccccaacaaa agtacgatac aatgatcctg agcgattccc
     4861 ggattttgga agaaatggac aaaggcacca tcgtgatctc gccctacgac cgcgattgcc
     4921 tgggcagcaa cagctacgat gtgcacctcg gcggcacgct ggccacttac cgcgaccaca
     4981 ttctcgatgc caaaaagcac aaccacattg agtatttcga aatccccgat gaaggcttcg
     5041 tattgtaccc gcatgtgttt tacctgggcg taacgctgga gtacaccgaa acccatgcgc
     5101 atgtgccctt cctcgaaggc aaatcatcca ccggccgact ctgcatcgac atccacgcca
     5161 ctgccggcaa gggcgatgtg ggcttttgcg gcaactggac cttggaaata tcggtaaagc
     5221 aaccggtgaa agtgtacaag ggcatgccgg tgggacagct gatctacttc cccgtggatg
     5281 gcgaaattga agtgaagtac aaccagaagg ccaatgccaa atacagcggc cagcccaaca
     5341 agcccatcga aagcatgatg tggcggaata agttttgagc aattgttgtc atccatattt
     5401 ccccacgaag accacaaaga atcacaaaga catttgctta gtggtcttgc tgttcttagt
     5461 gggataactt gctttctcct actatgacca cgaaccatca ccaagggttt tgtcgggtgg
     5521 taactgtaga actggacttg tggttacaaa atccgctgag gcattacgct acccaggccc
     5581 cggtgatcac cccgtcttct atttccacat caatgtattc ctggatggtg gtggcgaggc
     5641 tgaagcccac ataatcgggc tgcaccggga attttttgtg cgtacggtct accagcacgc
     5701 aggtctgtat tttatcagga aaataattca ggaaaggctt cagggcatac gtgagggtgc
     5761 ggccgctgtt ggccacatca tccaccagca ccagcacggc atggccaaaa tcgggggtgg
     5821 ccgacaaatg cacctcggta ggatgctttt tgtcgaggga ggcttctatg atctcaatgg
     5881 ttcccttgaa atactgctgc agggttttgg cgatttcagc ggccatcagt acgccattgt
     5941 gcactatgcc cgccagtatg atgcgctgcg catcggtatt gcgttccgct atttccagcg
     6001 ccaggcgctc cagtttcacg gctatctgct gttggttgag gatatatgta ttagtcactg
     6061 tattcaggct ttgcggcaaa ataaccacaa ttgggacaca gatacacccc ttcccttaat
     6121 ttagctggct cttatttttt ggtccgaaaa acgattgtat ggaatacctc gcccaggctt
     6181 tgtttgtagt aatgagtgcg gctgccatct ggctctttgc ccgcaacatt ggaaagatcc
     6241 ggaaagtgat actgatgggg cgtgacgaag ccattgaaac cgaccgcagc cagcgcttca
     6301 acaacctgct gctgctggca tttggccaaa agaaaatgtt caagaacccg ctggtggcgc
     6361 tgatgcactt cgtgatctac gccggcttta tcatcatcaa catcgaagtg ctggagatag
     6421 tgctggatgg cgtgctgggc acccaccgcc tttttgcccc cgtgctcggt ggcttctacg
     6481 atttcctcat caatgccttt gaaatgctgg cactcggcgt gctgctggtg tgcgtggtct
     6541 tcctggtgcg caggaacgtg atcaagctgc aacgcttcat cagccgcgac ctcgacggct
     6601 ggccccgcag cgatgccaat tacatccttg tcaccgagat cgtattgatg agcctgttcc
     6661 tgaccatgaa cgccaccgaa ggcgtgctgc aggcccgtgg cgtggcgcac tatgccgagc
     6721 atcccgtggg gccttttatc atcagcggtg ccttgcagcc tttgttcgac agtctttcca
     6781 gcgg
//
LOCUS       DATIQF010000521         1662 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_236781,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000521 DATIQF010000000
VERSION     DATIQF010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236781"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(267..>1662)
                     /locus_tag="VLL95_08610"
     CDS             complement(267..>1662)
                     /locus_tag="VLL95_08610"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HSR38962.1"
                     /translation="DRIELLPQSGSDRRYFRIYTGEQTLIGCYNLNIRENETFIYFSR
                     HFSSKGLPVPKIVAVNEEGTAYLQTDLGQESLLNKLEQHGYNEYVKGLFADSLTQLAR
                     LQVKGHKGLDYSKCITAKEFGKQAILSDLLYFKYYFLDALQQPYDKQAMIDDFEALAT
                     YLTHTEYKFFMFRDFQSRNIIINNDKPYFIDYQGGMKGAPQYDAASMIWQARADLPDE
                     WKQELLEHYMNALEEVLEHPIDRNIFVAQYYGYALIRLLQVLGAYGFRGLFERKAQFL
                     SAIPQALQNLKWFIEHRPLGIHVPEFKRMLNVVVNDDIIARFTPPKANENTPLEVYVS
                     SFSFKKNGYPEDDSENGGGFVFDMRGILNPGRIDEYKTLSGKDKEVMDFLEQKTRMPE
                     FLNSVFDLVDISVEDYLKRGFSKLMVNFGCTGGQHRSVYAAEQTARHLRNKYKVKTVV
                     QHINEANWVKEIAK"
BASE COUNT          351 a          432 c          410 g          469 t
ORIGIN      
        1 ctgcaaaatg atgcacattc atcacgatac gactgatgcc cgcctgctgc aggtattcca
       61 cgttgcgctg cagcacggtt ttcccattca ccatcgccag cgctttggga tgatgatcgg
      121 taaatggttt caaacgggtg cccagccccg cggccagtat cattgctatc atatgctcaa
      181 ccaaaatgaa tttttaagtc caggccacac gacattggca aactatcgtt cacacatcac
      241 acttcgtatt tcgtatctcg tacttttcac tttgcaattt cctttaccca attcgcctcg
      301 ttgatgtgct gcaccaccgt ctttactttg tacttgttgc ggaggtgtcg ggcggtttgt
      361 tcggcggcat acacactgcg gtgttgcccg ccggtgcatc caaaattcac catcagtttg
      421 ctgaagcctc ttttcaggta atcctccaca ctgatgtcca ccaaatcaaa aacactgttc
      481 aggaattccg gcatgcgggt tttttgctcc aggaaatcca tcacttcttt gtctttacca
      541 ctcagtgttt tgtattcatc aattcggccg gggttaagaa tgccacgcat gtcgaatacg
      601 aagccaccgc cattctcgct gtcatcttcg gggtagccgt ttttcttgaa gctgaaactg
      661 ctcacataca cctccagtgg cgtgttttca ttggcctttg gcggcgtgaa acgggcgatg
      721 atgtcgtcgt tcaccaccac attcagcatg cgtttgaatt ccggcacatg aatgcccagg
      781 ggtcggtgtt caatgaacca cttgaggttt tgcagtgcct gcggaatggc gctcaggaat
      841 tgcgctttgc gttcaaacaa tccgcggaag ccataagcgc ccagcacctg cagcaggcgg
      901 atcaacgcat agccatagta ttgggccacg aaaatgtttc tatcaatggg gtgctccagc
      961 acttcttcca gcgcattcat gtaatgctcc agcaattcct gtttccactc atcgggcagg
     1021 tcggcccgtg cctgccatat catactggcg gcatcatatt gcggcgcccc tttcatgcca
     1081 ccctggtagt cgatgaaata gggcttgtcg ttgttgatga tgatgttgcg gctttggaag
     1141 tcgcggaaca tgaagaattt gtattcggtg tgggtaaggt aggtggccaa tgcttcaaag
     1201 tcgtcgatca tggcctgctt gtcgtacggt tgttgcaacg catcgaggaa ataatatttg
     1261 aagtacagca agtcgctcag gatggcctgc ttgccaaact ctttggcggt gatgcacttg
     1321 ctgtaatcaa gtcccttgtg tcctttcacc tgcaggcggg ccagttgggt gaggctgtcg
     1381 gcaaacagtc cttttacata ctcgttgtat ccatgctgtt ccagtttgtt cagcaggctt
     1441 tcctggccga ggtctgtttg caggtaagcg gtgccctctt cattcactgc cacaatcttt
     1501 ggcaccggca atcctttgct gctgaaatgc cgggagaaat aaatgaaggt ttcgttttcc
     1561 cggatattga ggttgtagca accaataagg gtttgttccc cggtgtaaat gcggaaatac
     1621 cgccggtcgc tgccgctttg gggcagcagt tctatacggt ca
//
LOCUS       DATIQF010000522         5264 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_115132,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000522 DATIQF010000000
VERSION     DATIQF010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5264
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115132"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..417)
                     /locus_tag="VLL95_08615"
     CDS             complement(<1..417)
                     /locus_tag="VLL95_08615"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38963.1"
                     /translation="MSEKTTSYHKEKINILLLENISETAIANIKSHGYGSITKVAGAL
                     DEEALIKALKDVHLLGIRSKTKVTRRVLEHAPKLQAIGAFCIGVNQIDLTAATQHGVS
                     VFNAPYSNTRSVAELVIGAAILLIRRIPDKNKSAHEG"
     gene            558..1880
                     /locus_tag="VLL95_08620"
     CDS             558..1880
                     /locus_tag="VLL95_08620"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HSR38964.1"
                     /translation="MKKEFAKMPAQPMSFSIESSFLRGMRGKLFLLIAVWMAAAVFFA
                     CNNPTKGNPPFSKTERLRHLDTSEVKSYQEQLASFFDSLLLRSGTFSGGILVAKNGQV
                     LYENYTGFADGDKTEVITPDTRFHVASTSKTFTSIAVMQLVAQGKINLDDSIQLYFPL
                     FPYQGITVRRLLSHSSGLPNYANLFPYYKWDEKKTATNTDVLHLFYANRPGLEFIPGS
                     RFHYSNTNFAFLALIVEKVSGRFFPDYVQDSIFSRAGMTQSYVLNHRNPGAYIPSWAG
                     NRIYDFNFLDAIYGDKNVFTTCRDLLKYDSAIRVGALLPNAWLDSSWTPSFVDRKYND
                     PIEHYGLGWRLKIFGDSLKVPYHNGWWHGNNAVFQRLIADTAVIIVTGNRFTNRIYSA
                     AKAANIFRPYYSDFRDEQEVEQGQSGRKQSVSAKRKTSVPSRSRKGRR"
     gene            1892..3388
                     /locus_tag="VLL95_08625"
     CDS             1892..3388
                     /locus_tag="VLL95_08625"
                     /inference="COORDINATES: protein motif:HMM:TIGR00196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HSR38965.1"
                     /translation="MIIYRSQDIRDWDAFTISQEPVASVDLMERAAQALCSWLTSHFS
                     NEVPLVFFCGKGNNGGDGLALARLLHGKGFACTIIIVGTQPGSPDFIENLHRLQAIGL
                     AVTEFDAANPPNVDLAALVVDAIFGTGINRAPSGIYAAAIQFINQLPNQKVAVDLPSG
                     LYADEFTDHEWVVHAQYTCTFQCLKPALLMAENEKYTGQWTVLDIGLHPAFVAQNPPN
                     MFLVDDPGEFVALKQLSAFAHKGHRGHALLGVGSANMMGAAVLAAKAALRSGAGLVTV
                     ATDSAGWPVIQTAAPEAMCAARSSLVNDSYQQQRRIKSIGVGCGWMPDDDHLQQLACL
                     IEQSTLPLVIDATALALLAEMPASLAHALTPGRILLTPHAGEFDRLFGNSQNNFERLE
                     KARDAARQYQCYIMLKGAYSRLVTPDGMVYFNATGNHGMAKGGSGDVLTGLLTGLLAQ
                     GYPVKDAALLGAWLHGKAGDVAAERYTANGMTAGNLIECLPAAWERAV"
     gene            complement(3389..3826)
                     /locus_tag="VLL95_08630"
     CDS             complement(3389..3826)
                     /locus_tag="VLL95_08630"
                     /inference="COORDINATES: protein motif:HMM:NF040124.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6526 family protein"
                     /protein_id="HSR38966.1"
                     /translation="MQNQNYANHRRMVPGFHYVLSLVILSCIVISSIVLVKKLTSPDE
                     QYVESIFSFFVSVALAGLFWFCRSFALRAQDRAIRAEENFRHYILTGKPLPSGLRMGQ
                     IIALRFASDAELPALTQKALAEKLKGNDIKKLIVNWKTDYHRV"
     gene            complement(3883..>5264)
                     /gene="dacB"
                     /locus_tag="VLL95_08635"
     CDS             complement(3883..>5264)
                     /gene="dacB"
                     /locus_tag="VLL95_08635"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0009002 - serine-type D-Ala-D-Ala
                     carboxypeptidase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HSR38967.1"
                     /translation="SSSWLNAQSLPQKLSQAFRKFQLDEQLKYAGIGFCVQDASGKTV
                     FQYNENMGLAPASTQKIFTAAAALHELGAAFRYNTGINYAGRIVDTVLNGDLLIHGSG
                     DPTMGSWRYAAQPDTAFFELVWQALKSRNLRRITGDIIGTNAQFSPKPIPDGWIYGDI
                     GNYYGAGSWALNYHENQYDISFDASGKHSSKLPVLATTPAPGIHTFNSFVQLGASGSG
                     DNSVIYAPPYSSMAYVAGTLGKQSKPFTISGSMPFGELSLLDALGNYLVEKGISIDGK
                     PKPSVYYQVNNKQIPAVTGILGNYQSVTLDSVVYWFLQKSINLYGEAMLKTLAVKAGK
                     QGDTDTGAEWLRDFWNTRGIDKNAIRIQDGSGLSPQNRVTALSQVAVLQYASQQTWFN
                     AFYEGLPLIHNIKMKSGTIGGAKGYTGYISDRNGNRYSFSLLVNNYSGMANGVVQKMW
                     ALLDVIGNN"
BASE COUNT         1231 a         1317 c         1358 g         1358 t
ORIGIN      
        1 gccttcatgg gccgatttgt tcttgtccgg tattctccga atgagcaaaa tggccgctcc
       61 aatcaccagt tcggctacgc tgcgggtatt actgtaaggc gcattgaaaa cactcacccc
      121 atgctgggtg gcggcggtga ggtcaatttg attgacgcca atgcagaaag cgccaatagc
      181 ctgcaatttt ggggcgtgct ccaaaacacg gcgtgtcact ttggtcttgc tcctgatgcc
      241 aagcaaatgc acgtccttca acgctttgat gagggcctct tcatccaatg ctcctgccac
      301 tttggtaatg ctgccatatc catgcgattt gatattggcg atggccgttt cgctgatgtt
      361 ttccaacagc agaatattga tcttctcttt gtgataactg gttgtttttt ctgacatagg
      421 tccgcgaatt taggaaaccc ataccgcacc ttttcaaaca aaatgcatcg aacgctgtat
      481 ggtcattcag catttgctat ttgcaccttt cgaaatgcct ctttgatgaa cgatttcctg
      541 aagtttattc aattggtgtg aaaaaagaat ttgccaaaat gccggctcag ccaatgagct
      601 tcagcattga atcttcattt ttgcgtggta tgcggggaaa actgttttta ttgattgcgg
      661 tttggatggc ggctgccgtc ttttttgcgt gcaacaaccc taccaaaggc aatcctccct
      721 tttccaaaac agagcgcctg aggcatttgg atacctcaga ggtgaaatcg taccaggagc
      781 agctggcttc gtttttcgat tcgctgttgt tgcgttccgg taccttttct ggcggcatcc
      841 tggtagccaa aaacgggcag gtgctgtacg aaaactatac cggttttgcg gatggcgaca
      901 aaacagaagt catcacaccc gacacccggt ttcatgtggc atctacgtcc aaaaccttta
      961 ccagcattgc agtgatgcag ctggtagcgc agggtaaaat caatttggat gattccattc
     1021 agttgtattt ccccttgttt ccttaccagg gtattacagt acgtcgtttg ctgagccaca
     1081 gcagcgggct gcccaactat gccaatttgt ttccgtatta caaatgggat gagaaaaaga
     1141 cggccaccaa taccgatgta ttgcatttgt tttatgccaa ccggccggga ttggaattca
     1201 taccgggcag ccggttccat tattccaaca ccaactttgc tttcctggca ctgatcgttg
     1261 aaaaagtgag tggtcgcttt ttcccggact acgtgcaaga cagtattttc tcgagagccg
     1321 gcatgaccca aagctatgtg ctcaaccatc gcaatcccgg agcctacatt cccagctggg
     1381 ctggcaaccg catctacgat tttaatttcc tcgatgccat ttacggcgat aaaaatgtat
     1441 ttaccacctg tcgcgatctg ctgaaatacg acagtgccat cagggtgggc gctttgttgc
     1501 ccaatgcctg gctcgacagt tcatggacgc ccagttttgt agatcgcaag tacaatgacc
     1561 ccattgagca ctatggactc ggctggaggc tgaagatatt cggcgactct ttgaaagtgc
     1621 cctatcacaa tggatggtgg catggcaaca acgccgtatt ccaaagactc atcgctgata
     1681 ccgcggtgat cattgtaacc ggcaaccgct ttaccaaccg catttattct gctgccaaag
     1741 ccgcgaatat tttccggccc tactattccg atttcaggga tgagcaggaa gtagaacagg
     1801 gccagtcagg ccggaagcaa agcgtttcgg ccaagcgcaa aacaagcgta ccttcaagaa
     1861 gccgaaaagg cagaaggtaa tcagcgatgt catgatcatt taccgttcgc aagacatcag
     1921 ggattgggat gctttcacca tctcccagga acctgttgct tctgtcgacc tgatggaaag
     1981 agccgcccag gcgctttgct catggctgac cagccatttc agtaacgagg tgcctctcgt
     2041 tttcttctgc ggaaagggga ataacggggg cgacgggctg gccctggcac gcctgctgca
     2101 tggcaagggc tttgcttgca ccattatcat cgtaggcaca cagccgggtt caccggattt
     2161 tattgaaaac ctgcatcggc tgcaggccat tgggcttgca gtaacggaat ttgatgcggc
     2221 gaatcctcca aacgtggatt tggctgctct ggtggtggat gccatttttg gtaccggtat
     2281 caaccgggca ccctcaggta tttatgccgc tgccattcaa ttcatcaacc aactgccgaa
     2341 ccagaaggtc gccgttgacc tgcccagcgg tttgtatgct gacgaattca ccgaccatga
     2401 atgggtggtg catgctcagt atacctgtac ttttcaatgc ctgaagccag ccttgctgat
     2461 ggcagaaaat gaaaaataca ccgggcaatg gaccgtgctg gatatcgggt tgcatcccgc
     2521 ctttgtggct caaaacccac ccaacatgtt tttggtggat gacccgggtg agtttgtggc
     2581 attaaagcag ttgtcggcct ttgcgcacaa aggccacaga gggcatgctt tgttgggcgt
     2641 gggcagtgca aacatgatgg gagctgctgt gctggcggca aaggcagcct tgcgcagtgg
     2701 ggcagggttg gtcactgttg ccactgacag tgcaggctgg cccgtgatac aaacagcagc
     2761 accggaggcc atgtgtgctg cccgcagttc gctggtgaac gacagctacc aacagcaacg
     2821 acgcatcaaa tccattggcg tgggttgtgg ctggatgccc gatgatgacc acctgcaaca
     2881 actggcctgc ctcattgaac aatctaccct accgctggta atagatgcta ccgcgttagc
     2941 gctgctggcc gagatgcctg cttcgctggc gcatgccttg acccctggtc gcattttact
     3001 gacacctcat gcgggagagt tcgaccgttt gttcggcaac agtcaaaaca attttgaacg
     3061 attggaaaaa gccagggatg cagcccggca ataccagtgt tacatcatgc tcaagggcgc
     3121 ttattcccga ttggtaacgc cggatggaat ggtctacttc aatgccactg gcaatcatgg
     3181 catggccaaa ggaggcagtg gcgatgtgct cacaggcttg ctgaccggtt tgctggcgca
     3241 aggatatcct gtaaaggatg cggccctgtt gggcgcatgg ctgcatggca aagccggtga
     3301 cgtggccgct gaacgctata ctgcgaatgg gatgaccgca ggcaacctca ttgaatgcct
     3361 gcctgctgca tgggaaagag cggtttgatc atacccggtg gtagtcggtt ttccaattca
     3421 cgatcaactt cttaatgtcg ttgcctttta atttctccgc cagtgctttt tgtgtcaaag
     3481 caggcaattc ggcatcgctg gcaaaacgca gcgcaatgat ctgccccatc ctgaggccgg
     3541 atggaagcgg tttgccggta agaatgtaat gcctgaaatt ttcctccgcc ctgatggcac
     3601 ggtcctgtgc ccgcagtgca aaagaacggc agaaccaaaa caacccggcg agagccacgg
     3661 atacgaaaaa tgagaaaatg gactcaacat attgttcatc ggggctggtc agttttttta
     3721 ccagcacgat ggaactgata acaatacaac taagaatgac taacgaaagc acatagtgaa
     3781 agcctggcac catgcgccgg tgattggcat aattctgatt ttgcataggg ttgtatttgc
     3841 aagggttgca agctaattga atttgacgga gaaaccatcg ggtcagttgt tgccgatcac
     3901 atcgagcaac gcccacatct tttgcaccac cccgttggcc atgccagagt agttgttcac
     3961 caggagagag aaagaatagc ggttcccatt tctgtcgctg atgtaacctg tatagccctt
     4021 ggcaccgcca atggtgccgc ttttcatttt gatattgtga atgagcggaa ggccttcata
     4081 aaaagcgttg aaccaggttt gttgggaagc atattgaagt actgccacct gtgataatgc
     4141 cgtcaccctg ttttgcgggg aaagcccgct gccatcctgg atgcggatgg cattcttgtc
     4201 gatgcccctg gtattccaga aatcacggag ccattctgca cctgtatccg tgtcaccctg
     4261 tttgcccgct tttaccgcca gggttttcag catggcttcg ccgtagagat tgatgctttt
     4321 ttgtaagaac caatacacaa cggaatccag tgtcaccgat tggtaattgc ccaggatgcc
     4381 tgtgaccgcc ggtatttgct tgttgttgac ctggtaataa accgaaggct tgggtttgcc
     4441 atcgatactg atgccttttt ccacgaggta attgcccagt gcatccagca gcgacaactc
     4501 gccaaagggc atagaaccac tgatggtgaa aggttttgat tgtttgccca gagttccggc
     4561 tacataagcc atgcttgaat acggtggtgc atagatcaca ctgttgtcgc cgcttcctga
     4621 agcgcccagc tgcacaaagc tgttgaaggt gtgaataccc ggcgctgggg tggtggccag
     4681 taccggtagt ttggaactgt gtttgccgct ggcatcaaaa ctgatgtcat attggttttc
     4741 gtggtagttc agtgcccatg accctgcgcc gtaataattg ccaatgtcgc catagatcca
     4801 gccatccgga atgggtttgg gcgaaaattg cgcattggtt ccaataatgt cgccggtaat
     4861 tcttctgagg tttcttgatt tgagcgcctg ccatacaagt tcgaaaaaag cagtatcggg
     4921 ttgtgccgca tatcgccagc tacccatggt aggatcgcca ctgccatgaa tcagcaggtc
     4981 gccgtttaaa acggtgtcta caattctgcc ggcgtaattt attcctgtgt tgtatctaaa
     5041 agcagcgccc aattcgtgca gcgctgctgc cgctgtaaat attttctggg tactggccgg
     5101 tgccagtccc atgttctcat tgtattgaaa tacggtcttg cccgaagcgt cctgcacaca
     5161 aaacccaatg ccggcatatt tcagttgctc gtccagttga aattttctga atgcctgcga
     5221 aagtttttgg ggcagcgatt gggcattcaa ccacgatgag gaaa
//
LOCUS       DATIQF010000523         5829 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_206457,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000523 DATIQF010000000
VERSION     DATIQF010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5829
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206457"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(74..454)
                     /locus_tag="VLL95_08640"
     CDS             complement(74..454)
                     /locus_tag="VLL95_08640"
                     /inference="COORDINATES: protein motif:HMM:NF015418.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38968.1"
                     /translation="MQQMISVQEAKRMVNELAIPLLPTRVPLHMAAGLTLAEDVMAPY
                     SIPAYPQSSMDGYALAHSSVGADITLVGEMAAGSNQHFQLQPGQAIRIFTGAAVPAGA
                     DTVVIQEKSKTENGKLVIEDANLK"
     gene            complement(464..1444)
                     /gene="moaA"
                     /locus_tag="VLL95_08645"
     CDS             complement(464..1444)
                     /gene="moaA"
                     /locus_tag="VLL95_08645"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: protein motif:HMM:TIGR02666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HSR38969.1"
                     /translation="MIADGFNRVHNYLRISMTDNCNLRCFYCMPEDDYDFTPASRLMQ
                     AHEIEAIAATFVEHGVNKIRLTGGEPLVRKDAADIINRLSKLPVKLTLTTNGTRLHEF
                     AEVIKDAGITSLNISLDTLQRDRFLLMTKRDQFERVRRNIDMMMDFGFHVKVNVVVTK
                     GVNDAEIPDFIEWTKLDPIHVRFIEFMPFTGNHWQNDKVVTWQEILERVASAYHMNPI
                     KRDKHDTAKSYMVPGHQGTFAVISTMSAPFCSDCNRMRLTADGKMKNCLFSNTETDLL
                     NPFRNGEDIVPLIYQSIRDKKKAQGGQFTERFEELQAASIQNRSMITIGG"
     gene            complement(1441..2058)
                     /locus_tag="VLL95_08650"
     CDS             complement(1441..2058)
                     /locus_tag="VLL95_08650"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HSR38970.1"
                     /translation="MSYRVNHCGIVILAAGQSQRMGSPKQLLTYHDATLLEHAVNTAL
                     STQLQPVVVVLGANFEALLPVLAGKNVAIVKNNGWEEGMASSLRLGLQHLQQLAPRHD
                     GIIFMVCDQPFVNSSLLESLMTTQHSTGKAATASSYAGKLGTPALFHQTLWRQLQQLQ
                     GDTGARKLLMAHPDEVAAVPFEAGVTDIDTQEDYDRLMNNQSVLE"
     gene            complement(2065..3222)
                     /locus_tag="VLL95_08655"
     CDS             complement(2065..3222)
                     /locus_tag="VLL95_08655"
                     /inference="COORDINATES: protein motif:HMM:NF024869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HSR38971.1"
                     /translation="MKQLKQILAAYDAAIHAGKKSALAAVVHLDGSSYRRPGARMLVS
                     DEGELTGAISGGCLEGDALRKALLVLNQQQSKLVTYDTSDEDDAAIGIQLGCAGVIQV
                     LFEPIQPSNPDNPIQLLRKAVAIRQQSVLVTLFSLENKRNEQPGTCLLMEANGNISGS
                     IPYPEIEQFVMEDVHAAMANKQSAFKQYVGNEFSITAFIEFLQPPVSLVVIGAGNDAI
                     PMMQMADTIGWDVRVVDGRNTHAKPERFASACQVLVSKPEKVLEQIPIDDQTVFVMLT
                     HNYNYDLAMLKALLPKDIPYIGMLGPKKKLERMLDELRDGGMTITDDMLEKVFGPTGL
                     EIGAETAEEIALSIIAEIKAVLCNKPGGMLRYKEDVIHSREETRITEKRLH"
     gene            3402..4103
                     /locus_tag="VLL95_08660"
     CDS             3402..4103
                     /locus_tag="VLL95_08660"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HSR38972.1"
                     /translation="MVLNAQNRAGGDPKLTEVWEPKVPVVTPGKSNADAPSDAIVLFD
                     GKTLSQWESSKGGEVTWTIADGAMTVKPGSGEIRTKQGFGDCQLHIEWRTPQVVKGEG
                     QFRGNSGIFLMGRYELQVLDSYNNTTYSNGQAGSIYKQRLPLVNASRPPGEWQTYDII
                     FTAPVFYEDGRVKEAARITVFHNGVLVQNNVEIWGNTQYIGVANYEKHAEKLPIALQD
                     HGDLVSFRNIWIRPL"
     gene            complement(4210..5289)
                     /locus_tag="VLL95_08665"
     CDS             complement(4210..5289)
                     /locus_tag="VLL95_08665"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HSR38973.1"
                     /translation="MRKLILGILLTVLAANLLAQSHAVSQAFDSAAAKGFSGVMLVAK
                     KGKPVFKGVNGYRHFETKEALQFDDIFELASVSKQFTAMIIMMLQEEGKLQYDDLLEK
                     YVAVPYKGISIRHLLNHTSGLPDYQAIMDEHWDKQKVAGNEDVIAYLNRYAPPAHFAP
                     GEKYEYSNTGYLLLASVAEKAAGKDFIEMARQRIFRKLKMKNTDIRTLEAKAATVNFA
                     AGHLKDSTGNYVNANKFHSSDYTVWLGNRKGPGRISSTADDLLKWDKALYKNKLVSAA
                     TLAQAFTAATLNNGSKSDYGFGWDIATDTELGKIVKHNGDNPGYSTQIIRCIDKHYTV
                     IILCNNAHPAFKPLIEKTMEALRRM"
     gene            complement(5289..>5829)
                     /locus_tag="VLL95_08670"
     CDS             complement(5289..>5829)
                     /locus_tag="VLL95_08670"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSR38974.1"
                     /translation="IHFREADNYGAGGASEVKDLMAAAAFLAGRSDIDASKISLWGGS
                     YGGYLTAHGLSQAPDRFLCGVDIHGVHNWNNDIPVFAPWYKAEKFPNMAKLAFQSSPM
                     NYVKQWKKPVLLIHGDDDRNVLFSESVELAEVLRKQGVHVEQLVFPDEVHSFLLYRNW
                     VKAYEATFEFIDRHVKAKK"
BASE COUNT         1367 a         1512 c         1416 g         1534 t
ORIGIN      
        1 taagcacatc gcctgcccgc atggcagtgg cgcccttttc tatttcgctt ccaaccgggc
       61 gcacattatc gcctcatttg agattggcat cttcaatgac gagctttccg ttttctgttt
      121 tcgatttttc ctggatcaca acggtatcgg caccagcagg cactgccgca ccggtgaaaa
      181 tgcgaatggc ctggccgggc tgcaattgaa aatgctggtt gcttcctgca gccatttcac
      241 ctaccaaggt gatatcggca cctacactgc tatgcgccag ggcatagcca tccatgcttg
      301 attgcgggta agccggaatg ctgtagggtg ccatcacatc ctcggccagc gtcaatcctg
      361 ccgccatgtg caaaggcacc ctggttggca agagtggtat tgccagttca ttcaccatcc
      421 tctttgcctc ctgtacggaa atcatttgtt gcataaacta aaattagccg ccaatggtga
      481 tcatgctgcg attctgaatg gaagcggctt gcaactcttc gaaccgctcg gtaaactgtc
      541 ctccctgtgc cttcttctta tcgcgaatgc tttgatagat aagcgggact atgtcctcac
      601 cattccggaa aggattcagc aagtctgttt cggtattgga gaagaggcag ttcttcattt
      661 ttccatccgc tgtcaggcgc atgcggttgc agtcgctgca gaagggagca ctcatggtgc
      721 tgatgacagc aaaagtaccc tggtggcccg gcaccatata gcttttggcg gtgtcatgct
      781 tgtcgcgttt tatcggattc atgtggtaag ccgaggccac acgttccaaa atttcctgcc
      841 aggtcaccac tttgtcgttc tgccagtggt tgccggtaaa cggcatgaat tcaataaaac
      901 gaacgtggat gggatcgagc tttgtccatt cgatgaagtc cgggatctcc gcatcgttta
      961 cgcctttggt cactaccacg ttcactttca cgtggaagcc aaaatccatc atcatatcaa
     1021 tattgcgacg aacccgttca aactgatcac gcttggtcat gagcaaaaag cgatcacgct
     1081 gcaaagtatc gaggctgatg ttcagtgaag tgatgcctgc atccttgatc acttcggcaa
     1141 attcgtgaag gcgggtaccg ttggtggtga gcgtcagttt caccggcagt ttagacaagc
     1201 ggttgatgat atcggcagca tccttgcgca ccaatggctc tcctcctgtg aggcgaattt
     1261 tgttgacacc atgctccaca aatgtggcgg cgatggcttc tatttcgtgg gcctgcatca
     1321 accggctggc cggtgtaaaa tcataatcat cttcaggcat gcagtaaaag caacgcaggt
     1381 tgcaattgtc cgtcatggaa atgcggagat aattgtgtac cctgttgaat ccatctgcta
     1441 tcattctaat acactttggt tgttcatcag acgatcataa tcttcctggg tgtcaatgtc
     1501 ggtaacgccg gcctcaaaag gcacagctgc tacttcatcg gggtgcgcca tcagcaactt
     1561 gcgggcacct gtatcacctt gcagttgctg caactgtcgc catagtgttt ggtgaaacag
     1621 tgcgggagtg cccagctttc cggcatagct gctggctgtt gctgctttgc cggtggaatg
     1681 ctgggtagtc atcaaacttt ccaacagcga gctgttcaca aagggttggt cgcaaaccat
     1741 aaaaataatg ccgtcgtgcc gcggtgccag ctgctgcagg tgttgcaaac ctaaccgcag
     1801 cgaggaagcc atgccttcct cccatccgtt gttcttcaca atcgccacat ttttaccggc
     1861 cagtacggga agcaaggcct caaagttggc acccaatacc accaccacgg gttgcagttg
     1921 cgtactcaat gcggtgttga cagcatgctc cagcagggta gcatcatgat atgtcagcaa
     1981 ttgcttggga ctgcccatgc gttggctctg gcctgctgcc agtatcacaa tgccgcaatg
     2041 gtttaccctg tagctcatgt tcgttcagtg caatcttttt tcagtaatgc gtgtctcctc
     2101 tctcgaatga atcacgtctt ccttatagcg cagcatgccg cccggtttgt tgcatagcac
     2161 tgctttgatt tcagcgatga tacttaaagc tatttcctca gcagtttccg cgccaatttc
     2221 caacccggtg gggccaaata ctttttcgag catgtcatcg gtaatggtca taccgccatc
     2281 acggagttcg tccagcatgc gttcgagttt cttcttcggg cccagcatac caatataagg
     2341 aatatccttg ggcagcaagg cctttagcat ggccaggtcg taattgtaat tgtgggtcaa
     2401 catcacaaaa acggtctgat catcgatggg tatttgctcc agcactttct cgggcttgct
     2461 taccagcacc tggcaggcac tggcaaagcg ttcgggtttg gcatgcgtgt tgcggccatc
     2521 caccacccgt acatcccagc caatggtatc ggccatctgc atcatgggaa tggcatcatt
     2581 gcctgcacca atcaccacca gcgataccgg cggttgcaag aattcgataa aagcggtgat
     2641 ggagaattca ttgcccacgt actgcttgaa agccgattgt ttgttggcca tggcagcatg
     2701 aacgtcttcc ataacaaact gctcaatttc ggggtaagga atgctgccgg aaatattgcc
     2761 attggcttcc atgagcagac aggtgccggg ttgctcgttg cgtttgttct ccaatgaaaa
     2821 caaagtcacc aaaacagatt gctgccggat ggcgaccgct ttgcgcaaaa gctggatggg
     2881 attgtcagga ttgctgggct gaatgggctc aaacaaaacc tgtatcaccc cggcgcaccc
     2941 aagttgaata cctatggcag catcgtcttc atcgctggta tcgtatgtca ccagttttga
     3001 ctgctgctga ttcagcacca gcagtgcttt gcgcagcgca tcgccttcga ggcagccgcc
     3061 gctgatggca ccggtcagtt cgccttcatc gcttaccagc atgcgggctc ccggccgccg
     3121 ataggaagat ccatccaaat ggactactgc agccaaggcc gattttttgc cggcatgaat
     3181 cgcagcatca tatgccgcca atatttgctt caattgtttc atactttgct gggacaagct
     3241 ttggccctct gtttagattt tgaagcacat tccaaaataa attgaattgc ctaaaaagga
     3301 ctgctaatca ttgtacaaac taaccaatga cctaaatttc ctgcaaacta atgccttgta
     3361 tgaaaaaact aagctttgtt ttcagtgcaa tcctgctaac catggtcctt aatgcacaga
     3421 atcgtgcagg aggcgatcca aaacttacag aggtatggga acccaaagta ccggtagtca
     3481 ctcccggcaa aagcaatgct gacgcgcctt ccgatgccat tgtgcttttt gatggaaaaa
     3541 cgctttcaca atgggaatcg tcgaaaggtg gcgaagtgac atggaccatt gctgatggcg
     3601 ccatgacagt aaagccgggt agcggtgaaa tacggaccaa acaaggattt ggcgattgcc
     3661 agttgcacat tgaatggcgt acaccccagg tcgtgaaagg cgaaggccag tttcgtggca
     3721 acagcggcat cttcctgatg ggacgctacg agctgcaggt attggacagc tacaacaata
     3781 caacctacag taatggccag gcaggcagca tatacaagca acgccttccc ttggtgaatg
     3841 ccagcaggcc tccgggagaa tggcagacct atgacatcat ctttaccgcc cctgtttttt
     3901 acgaagatgg acgggtaaag gaagcagccc gcatcactgt ttttcacaat ggggtgctgg
     3961 tacaaaacaa tgtggagata tggggcaaca cccaatacat cggagtggcc aattatgaga
     4021 aacatgcaga aaaactgcct attgctttac aagaccatgg cgaccttgtc agctttcgca
     4081 atatctggat ccgtccttta tagctcaagg ctgtcgcagg atttgcagtt gctgatcaga
     4141 agtgttcgaa tttgaatttc actgaagggc ttctctctat tgatagctcc tcggaaacaa
     4201 caagtgctgc tacattctcc tgagtgcttc catcgttttt tcaatgagcg gcttgaacgc
     4261 cgggtgcgca ttattgcaca atatgatcac cgtgtagtgc ttatcgatgc aacgaatgat
     4321 ctgcgtgctg tagccgggat tgtcgccatt gtgcttcact atctttccca gttccgtatc
     4381 agtggcaatg tcccagccaa agccatagtc gcttttgctg ccgttgttca gggtggcagc
     4441 tgtaaatgcc tgagccaaag tggcggccga aaccagtttg tttttgtaca gcgccttgtc
     4501 ccatttcaac aggtcgtcgg cagtgctgct gatgcgcccc ggtcctttgc ggttgcccag
     4561 ccacacggta taatcgctgc tgtgaaattt attggcgttc acgtaattgc ccgttgaatc
     4621 cttcaaatgg ccggctgcaa aattgaccgt tgccgctttg gcttccaggg tgcggatatc
     4681 tgtgtttttc attttcagtt tcctgaatat ccgttgacgg gccatctcga taaaatcttt
     4741 gccagccgcc ttttctgcca cactggccaa tagcaaatag ccggtgttgc tgtattcata
     4801 tttctcaccg ggggcaaaat gtgccggtgg cgcataacga ttcaaatagg caattacatc
     4861 ctcattgcct gccacctttt gtttgtccca gtgttcgtcc ataatggcct ggtagtcggg
     4921 taggccactg gtatggttca gcaaatggcg gatgctgatc cctttgtaag gcactgccac
     4981 atatttctcc agcaggtcgt cgtactgcaa ttttccttct tcctgcagca tcatgatgat
     5041 catggcggtg aattgcttgg atacagaagc caattcgaaa atgtcatcaa attgcagcgc
     5101 ttctttggtt tcaaaatggc ggtagccatt cacgcccttg aaaaccggtt tgcccttttt
     5161 cgccaccagc atcacaccgc tgaacccttt ggcagcagca ctatcgaatg cctgggaaac
     5221 agcgtgggat tgtgccaaca ggttagcggc aagcactgtt aaaagaatac cgagtatcag
     5281 ctttctcatt acttctttgc ttttacatga cggtcaatga attcaaaagt ggcttcataa
     5341 gcttttaccc agttgcggta cagcaaaaag gaatgcactt catccgggaa cacgagttgc
     5401 tctacatgca cgccttgctt gcgtaatact tctgccaatt ccacgctttc actgaacagc
     5461 acattcctgt catcatcgcc atgtatcagc aatacgggct ttttccattg cttcacataa
     5521 ttcatgggtg atgattggaa agccagtttg gccatgttag gaaatttctc cgccttgtac
     5581 cagggggcaa acaccggaat atcgttgttc caattgtgca cgccatgaat atccacgccg
     5641 cacaaaaagc gatcaggggc ctgtgagagc ccatgagctg ttaagtaccc gccataactg
     5701 ccaccccaca gtgaaatttt agaggcatcg atatcactac ggccagccaa aaaagccgcc
     5761 gcagccatca ggtcctttac ctcgctggcc ccgccggctc catagttgtc ggcttccctg
     5821 aaatggatg
//
LOCUS       DATIQF010000524         1735 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_160632,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000524 DATIQF010000000
VERSION     DATIQF010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1735
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160632"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1214
                     /locus_tag="VLL95_08675"
     CDS             <1..1214
                     /locus_tag="VLL95_08675"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF013113.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HSR38975.1"
                     /translation="GEELNIISAFEALGQKIAGTITPEDFKEVVKHSCPGAGACGGMY
                     TANTMASAIEALGMSLPYSSSNPAMSEEKQQECAEAGRAIRVLLEKDIKPRDIMTKKA
                     FENAITLIMIFGGSTNAVLHLIAMAKSVDVDLSIHDFQRISDKTPVLADFKPSGKFLM
                     QELHRHGGVPAVMRYLLDKGLLHGDCLTVTGKTVAENLANVKPIDFEAQKIVYPVEQP
                     IKATGHLQILFGNLAEQGSVAKISGKEGELFVGPARVFDGEKDLVAGIANGRVKKGDV
                     VVIRYEGPKGAPGMPEMLKPTSAIMGAGLGKDVALITDGRFSGGSHGFVVGHITPEAF
                     EGGLIALVKDDDTIELDANKRTMTLKVSEAEIAERRKQWKQPPLRVTKGVLYKYARVV
                     KNASEGCVTDE"
     gene            1290..>1735
                     /locus_tag="VLL95_08680"
     CDS             1290..>1735
                     /locus_tag="VLL95_08680"
                     /inference="COORDINATES: protein motif:HMM:NF014795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HSR38976.1"
                     /translation="METVAIKKERTEEAKTTTISGSAAVLEAFLAEGVDTIFGYPGGA
                     IMPIYDALYDYNDRLNHILVRHEQGAIHAAQGYARASGRTGVVFATSGPAATNLVTGL
                     ADAMIDSTPLVCVTGQVFAHLLGTDAFQETDVINITTPITKWNYQVT"
BASE COUNT          480 a          443 c          462 g          350 t
ORIGIN      
        1 aaggcgaaga actcaacatc atttctgctt tcgaagcatt gggccagaaa atagccggca
       61 ccatcacccc tgaagatttc aaggaagtgg tgaaacacag ttgccccggc gccggtgcct
      121 gcggcggcat gtataccgcc aataccatgg cttcggccat cgaagccctg ggcatgagcc
      181 tgccctactc ttcttccaac cctgccatga gtgaagagaa gcaacaggaa tgtgcagaag
      241 ccggaagagc catccgggta ttgctggaaa aggatatcaa gccccgggac atcatgacaa
      301 agaaggcttt tgaaaatgcc atcaccctga tcatgatttt tggtggcagc accaatgccg
      361 tgctgcattt gattgcaatg gctaagagtg tagatgtgga tctgagcatt cacgatttcc
      421 aacgcatcag cgacaagacc cctgtactcg ccgacttcaa acccagcggc aaattcctga
      481 tgcaggaatt gcaccgtcat ggtggcgtgc ctgccgtgat gcgctacctg ctggataaag
      541 ggttgctaca tggcgattgc ctcaccgtga ccggcaaaac ggtggcagag aacctggcca
      601 atgtaaagcc cattgatttt gaagcacaga aaatcgtata ccctgttgaa caacccatca
      661 aagcaaccgg tcacctgcaa atcctttttg gcaacctcgc cgaacaaggc agtgtggcca
      721 agatcagcgg caaagaaggc gaacttttcg taggccctgc ccgggtattt gatggcgaaa
      781 aagacctggt agcaggcatt gccaatggcc gggtgaagaa aggcgatgtg gtagtgatca
      841 ggtatgaagg ccccaagggt gcgccgggta tgcctgaaat gctgaagccc acttcggcca
      901 tcatgggtgc cggcctcggc aaagacgtgg cactgatcac tgacggcagg ttcagtggcg
      961 gatctcatgg ctttgtggtg ggacacatta ccccggaagc ttttgaagga ggcctgatag
     1021 cattggtgaa agatgatgat accattgaac tggatgccaa taaacgaacc atgacactca
     1081 aggtgagcga agcagaaatt gccgaaagaa gaaagcaatg gaagcagcca ccccttcggg
     1141 taaccaaagg cgtgttgtac aaatacgcca gggtggtgaa gaatgccagt gaaggctgtg
     1201 taaccgatga ataaaaaatt tctaccccac accccaccaa tcaagacttg ttgatcaact
     1261 gcgagttggt taagcataaa aaacacttta tggaaaccgt agccatcaaa aaagaaagaa
     1321 cagaggaagc aaaaacgaca accatcagtg gcagtgccgc cgtactggaa gctttccttg
     1381 ccgaaggagt ggacaccatc tttggctatc ccggtggtgc catcatgcct atttatgatg
     1441 ccctctatga ttataacgac cggctcaatc acatactcgt ccgtcatgaa caaggcgcca
     1501 ttcacgctgc acagggttat gcaagagcca gtggcagaac aggggtggta tttgccacca
     1561 gcggtcctgc cgccaccaac ctggtgacag ggttggcgga cgccatgatc gacagcacgc
     1621 cactggtgtg tgtgaccgga caggtatttg cgcatttact gggcaccgat gccttccagg
     1681 aaacggatgt catcaacatc accacgccca ttaccaagtg gaactaccag gtgac
//
LOCUS       DATIQF010000525         3342 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_84618, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000525 DATIQF010000000
VERSION     DATIQF010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3342
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84618"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..480
                     /locus_tag="VLL95_08685"
     CDS             <1..480
                     /locus_tag="VLL95_08685"
                     /inference="COORDINATES: protein motif:HMM:NF014623.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RMD1 family protein"
                     /protein_id="HSR38977.1"
                     /translation="ISIPEAAPEMLRIIMLHASQSVALDYFEAQTNRLMEETNSHTLV
                     LEQKGKLDLGVTALKKYIGKTLNLKNRIAEHLYIFDSPEETWENEELGKLDAGLKRTF
                     DTQARFRTIQEGLAIVKENLELFRDLLQHRQSNFLEWIIIALILVEVVNLFVEKIWG"
     gene            complement(486..2342)
                     /locus_tag="VLL95_08690"
     CDS             complement(486..2342)
                     /locus_tag="VLL95_08690"
                     /inference="COORDINATES: protein motif:HMM:NF019229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FG-GAP-like repeat-containing protein"
                     /protein_id="HSR38978.1"
                     /translation="MDLIINNTNETASIYENKQSETEHYHSVQIQLQDTTQNVNAIGA
                     TVRLFTPSGMQQQTVFPARGFQSSSTFFLHFGLGQQSQIDSVQVWWPEGNLSVYKKVQ
                     ADTINKIMPQQGLASFTGDKTTGTLFTLAPNNAGINYVHQSDGFVDFKRLMGLPHQIS
                     RQGPFMAVDDVNGDKLDDIFVGGNDLQPGKLFIQNGNGSFRIAPVQPWQQSRVPDGGV
                     CFFDADADGDNDLYVAHHGMQLNENDFAYQHQLYLNDGKGNFSFAIDALPEMRVSSTT
                     VTAADYNKDGKTDLLVACRSVPGRFPVIPTTYLLRNVSGGSQVKFEYASEQQSQLLRQ
                     PGLVTCAVWADINKDTWPDLLVAGEYMPITLFINERGQLKETKDKGFDNSNGWWCRLA
                     VDDLDNDGDLDLVGGNAGLNMQMKASPEQPVALYYNDFDRNGLIDPVLTYYIGGRQVP
                     ALGLDDMAEETPVVRKKFIRYEQFAKATWNDLYDEESRKDMLELKAFEMQSCWWENNG
                     KGQFTKHVLPLEAQFSMLQGMVIMDVDKDGKKDLVVAGNYYPWRTQWGRMDASYGWVL
                     RNTGKAFVSMYPSTTGLWLGGDLRDLQMIRTKGQPLLAATRYEGPLSVAQLR"
     gene            complement(2394..>3342)
                     /locus_tag="VLL95_08695"
     CDS             complement(2394..>3342)
                     /locus_tag="VLL95_08695"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HSR38979.1"
                     /translation="FEEQAAAYGLDAPGTYSTQCAFFDMDRDGDLDAFMVNHADMFYN
                     VFYNTTQLRKLRHPQFGNRLYRNDNGRFTEISEAAGITGSGINFGLGVAIDDVNGDHW
                     PDIYVTNDYNEQDFLYLNNQDGTFREVLKQSMGHISQFSMGVDMSDLNNDGWNDVVSL
                     DMLPEDNYRQKLLKGPEGYDYYQLMVDSGYHHQNMRNMLQLNMGIGPDGNPRFSEIGQ
                     LAGISNTDWSWSPLVADFDNDGFKDLYVTNGYLRDFTNMDFLKYTFAEAQAAAKGNGD
                     TAYAWKVIKDLQGTKIANYAFRNNARLQFANMASEWGLD"
BASE COUNT          846 a          906 c          729 g          861 t
ORIGIN      
        1 atcagcatac cagaagctgc acctgaaatg ctgcgcatta ttatgctgca tgcctctcag
       61 tcagtagcgc ttgactattt tgaagcgcaa accaaccggt tgatggaaga aaccaattct
      121 cacacactgg tattggagca aaaaggaaaa cttgaccttg gcgttactgc gcttaaaaaa
      181 tacatcggca aaacgctcaa cctcaagaac cgtatcgcgg agcatctcta catattcgac
      241 agcccggaag aaacctggga aaacgaagaa ctgggaaaac tggatgccgg tctgaaacga
      301 acctttgata cccaggcaag gtttcgcact atccaggaag gattggccat agtaaaagaa
      361 aacctcgaac tcttcaggga tctgctgcag caccgccaaa gcaatttcct ggaatggatc
      421 atcattgcgc tgatcctggt ggaggtcgtg aacctgtttg tagaaaaaat atggggatga
      481 tggcctcatc gcaattgagc aacactcaaa ggcccttcat agcgggttgc tgccaataaa
      541 ggctgccctt tggtacggat catttgcagg tctctcaaat cgccgcccag ccacaatcct
      601 gtagtggaag gatacattga tacaaacgct tttccggtat ttctcagcac ccaaccatag
      661 ctggcatcca tccggcccca ttgggtgcgc caagggtaat aattgcccgc caccaccagg
      721 tccttcttgc cgtctttgtc aacatccatg atcaccatgc cctgcagcat actaaactgc
      781 gcttccagcg gcaatacatg tttcgtgaat tgacctttgc cattgttttc ccaccagcaa
      841 ctctgcattt caaaagcctt caactccaac atgtccttcc tgctttcctc atcgtatagg
      901 tcattccatg tcgctttggc aaattgttcg taccggatga atttcttgcg caccaccgga
      961 gtttcttccg ccatatcatc caggcccaat gccggcacct gcctgccacc aatgtaatag
     1021 gtcagtaccg ggtcaatcag tccattcctg tcaaaatcgt tatagtacaa ggcaaccggt
     1081 tgttcaggag aggccttcat ctgcatattc agcccggcat tgccacccac caaatcaagg
     1141 tcaccatcat tatccagatc atctaccgcc aaacggcacc accatccatt gctattgtca
     1201 aaacctttgt cctttgtttc cttcaattgc ccacgttcat ttataaaaag cgtgatgggc
     1261 atgtactcgc ctgcaaccag cagatcgggc caggtgtctt tattgatatc tgcccaaacg
     1321 gcacaggtaa cgaggcccgg ctgccgcaat aactgcgatt gctgttcgct ggcatattca
     1381 aatttcactt ggctgccgcc gctcacattg cgcaacaaat aagtggttgg tatcaccggg
     1441 aaacggccgg gcactgaacg gcatgccacc agtaaatcag ttttgccatc cttgttgtag
     1501 tcggcagcag ttacagtcgt gctgctgacc cgcatctccg gcaaagcatc aatggcaaag
     1561 ctgaaatttc ctttcccgtc gttcaggtag agctgatgct ggtaagcaaa atcgttttca
     1621 ttcaactgca tgccatgatg ggctacatac aggtcattgt caccatcggc atcggcatca
     1681 aaaaaacaaa caccgccatc gggcacacga ctttgctgcc agggctgaac cggtgctatc
     1741 ctaaatgaac catttccatt ttgtatgaaa agcttgcccg gctgcagatc attgccaccc
     1801 acaaaaatgt catcaagctt atcgccattc acatcatcca ctgccataaa aggcccctgc
     1861 ctgctgattt gatgaggcag ccccatcagg cgcttgaaat caacaaagcc atcactttga
     1921 tgcacgtaat tgatgccggc gttgtttggc gccagcgtaa ataatgtgcc tgttgtttta
     1981 tcgccggtaa aggatgccaa tccttgctgg ggcattattt tgtttatggt atcagcctgc
     2041 acttttttat aaaccgataa atttccttca ggccaccaca cctgcaccga atctatttgt
     2101 gactgctggc ccaggccaaa atgcaaaaag aaggttgaag aagattgaaa accccgggcc
     2161 ggaaaaacgg tttgctgctg cataccgctc ggcgtgaaca atcttaccgt agcgccgatg
     2221 gcattcacat tttgcgttgt atcctgcaat tgtatttgca ccgaatgata atgctctgtt
     2281 tcgctttgtt tgttctcata aatcgaagcc gtctcattgg tgttgttgat gatgagatcc
     2341 acataaccat cattgtcaag gtcggcgtag gcagcacccg tggaaatagt aggttaatca
     2401 agtccccatt cactggccat gttggcaaac tgcagcctgg cattgttccg aaaagcatag
     2461 ttggcgattt tagtgccctg caaatccttg atcactttcc acgcatacgc agtatcgcca
     2521 ttacccttgg ccgctgcctg cgcttcggca aaagtgtact tcagaaaatc catattggta
     2581 aaatcacgca ggtacccgtt ggtcacatac aggtctttga aaccatcgtt gtcaaaatcg
     2641 gctaccaacg ggctccagct ccaatcggta ttgctgatgc ccgctaattg cccgatttca
     2701 ctgaaacgcg gatttccgtc aggtccaatg cccatgttca gttgcaacat gttgcgcatg
     2761 ttctggtgat gataaccgct gtctaccatc agttgatagt aatcgtatcc ttcaggaccc
     2821 ttcagcaatt tctgacggta gttgtcttcg ggcagcatat caagactcac cacatcgttc
     2881 catccatcgt tgttgagatc actcatatcc acgcccatgc tgaactgcga gatatgcccc
     2941 atggactgct tcagcacttc ccggaatgta ccatcctggt tgttgagata caggaagtcc
     3001 tgttcattgt aatcattggt cacatagata tccggccaat gatcaccatt cacgtcatca
     3061 atggctacgc ctaatccaaa gttgatgccg ctgccggtga tgcccgccgc ctcactgatt
     3121 tcggtgaagc gtccattgtc gttgcgatac aaccgattgc caaactgcgg gtgccgaagc
     3181 tttcgcagtt gcgtagtgtt gtaaaacaca ttgtaaaaca tatcggcatg gttcaccatg
     3241 aatgcatcca ggtcgccatc gcgatccata tcgaaaaagg cacattgcgt gctgtaggtg
     3301 cccggtgcgt cgaggccata cgccgccgcc tgttcttcaa at
//
LOCUS       DATIQF010000526         2036 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_38844, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000526 DATIQF010000000
VERSION     DATIQF010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38844"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..633)
                     /locus_tag="VLL95_08700"
     CDS             complement(<1..633)
                     /locus_tag="VLL95_08700"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HSR38980.1"
                     /translation="MLSQLIQEFVDAVNPYAISEDEGYKPGQIGHMLSESNDLEDADL
                     VLLGCDEWRGMGIRGSMGNTDTVRQQLYSLYLWHSAIRIADAGNLKNGVSLTDTYAGV
                     TMVLREMLKAGKRVLLFGGSHDLMLAAYRAFAEERILIESTAVDALIDLDKEHPFPAH
                     NFLLEMLTSEPNYVKHFNLVGFQSYFVNPNLLETIDKLRFDCYRVGKVQEK"
     gene            817..>2036
                     /locus_tag="VLL95_08705"
     CDS             817..>2036
                     /locus_tag="VLL95_08705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38981.1"
                     /translation="MRSSFHKKALWLAIVLLAMLVDSPGSAQDTTADSADFRMDGYVL
                     GPQENAAEKIRQNLFLKTVASRQSCYEGEAFEVEYLLYTRLSLDARVGRKTGFEGFAS
                     IEMPTSAANGQPSYQWHNGKVYKVYAIRKVQLTPLQNGMLSAGTLSLDATITFLKKGP
                     HQTDYDIDPYLPGNRSVHNIVLESPTVMINVKALPPSNNPNESGLVGQFKIEARLDSA
                     PVVAGKLGHLLIAIQGQGQWSKVQCPPIQWPQSFQAYEPSVTEQLDSQHVPVAGQRIY
                     RIPFETNKAGTVNIPGCSISFFNPLTQSYEKAVAAPFTISVASAGSAPKEETYSTNND
                     GSDFTFAFTRWAPWFFATAAVVLLVVLLRAAVLSKSRSRTTAPLENWDQPDAGIGHFS
                     RRLDADSGQYRSMT"
BASE COUNT          503 a          573 c          504 g          456 t
ORIGIN      
        1 cttttcctgc accttgccca cccggtagca atcgaagcga agcttatcga tggtctctag
       61 caaattggga ttgacgaagt aactctggaa acccaccagg ttgaaatgtt ttacgtagtt
      121 gggttcactt gtcagcattt caagcaggaa gttgtgggca ggaaaagggt gctccttgtc
      181 caggtcgatc aaggcatcaa ccgcagtgct ttctatcaat atcctttctt cggcaaaagc
      241 ccggtaggcg gccagcatca aatcgtggct gccaccaaac aataataccc gctttccggc
      301 cttcagcatt tcacgcaaca ccatcgttac tccggcgtaa gtatctgtaa ggctcacccc
      361 atttttcagg ttgccggcat cggcgatcct gatggcggaa tgccacaagt aaagactgta
      421 caactgctga cgtaccgtgt cggtattgcc cattgaaccc cgtataccca tcccccgcca
      481 ttcatcgcag cccagcaata ccaggtctgc atcctccagg tcgttgcttt cggaaagcat
      541 atggccaatc tggccgggct tgtagccttc atcttccgaa atcgcataag gattcacggc
      601 atctacaaat tcctggatga gttgggataa catgggcagt agcgttggtt ctgcgggtga
      661 agatattatc caggggaggt aggctttcgc aacaactttt aaacactcct tgaaaagcaa
      721 atgatgccgg caaaacccac agttttggtt aaaaggagca gccacctgcc ctgccgcaaa
      781 cggattcgct aaattgcctc ctcacctccc cgctttatgc gatcatcctt tcataaaaaa
      841 gcgctttggc tggccatcgt attgctggcc atgctggttg attcgcccgg ctccgcacag
      901 gataccaccg ccgacagcgc cgatttcagg atggatggat acgtactggg accccaggaa
      961 aatgcagcgg aaaagatccg gcaaaacctt ttcctgaaaa ccgtagccag ccggcaaagc
     1021 tgctatgaag gtgaagcctt tgaagtggag tacctgttgt acacccggct gagccttgat
     1081 gcccgggttg gccgcaaaac gggcttcgaa ggatttgctt ccattgagat gcccacatca
     1141 gcagccaatg gccaaccttc ctaccagtgg cacaatggga aagtgtacaa agtatatgcc
     1201 atcaggaaag tccaattgac gccgctgcaa aacggtatgc tttcagcagg caccctttcg
     1261 ctggacgcca ccattacttt tttgaaaaaa ggcccccacc aaaccgacta tgatattgac
     1321 ccttacctcc cgggtaaccg aagcgtacac aacatcgtac ttgaatcgcc aacggtaatg
     1381 atcaatgtca aggcgcttcc tccttctaat aacccgaatg aaagcgggct ggtggggcag
     1441 ttcaaaatag aagcccgcct cgactcggcg ccggtagtag ccggcaaact gggtcacctg
     1501 ctcatcgcca tacagggcca gggacagtgg agcaaagtgc aatgtccgcc catacaatgg
     1561 ccacagagct tccaggccta tgagccgtcg gtaacagaac aactcgactc gcagcatgtg
     1621 ccggtggcag gccagcgcat ctaccgcatc ccattcgaaa caaacaaggc aggcactgtg
     1681 aacattcccg ggtgttccat ttcattcttc aacccgctaa cccaatccta tgaaaaggct
     1741 gtcgctgctc cctttaccat cagcgtggcg tcggccgggt cagcaccaaa agaagaaact
     1801 tactccacga acaacgatgg cagtgatttc acgtttgctt ttacccgttg ggcgccctgg
     1861 ttttttgcca ccgcagcggt ggtgctgttg gtggtactgc tgcgggccgc ggtgttgagc
     1921 aaatccaggt ctcggacaac tgcgccgtta gaaaactggg accaacccga tgcgggcatt
     1981 ggccattttt cgcgccggct ggacgcagat agtggtcagt acagatcgat gacaca
//
LOCUS       DATIQF010000527         1881 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_251775,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000527 DATIQF010000000
VERSION     DATIQF010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1881)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1881)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1881
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251775"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1079
                     /locus_tag="VLL95_08710"
     CDS             <1..1079
                     /locus_tag="VLL95_08710"
                     /inference="COORDINATES: protein motif:HMM:NF013878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HSR38982.1"
                     /translation="QQAFREAFVKTIRDHFKKDYDASDIRTSIVAAISVRVQEPVFES
                     QTKTKLGSLNVYESGPSMKNFIGDFLAKELDNFLHKNPTVADALKKRIEQSERERKEL
                     QGIKKIANERAKKAALNNKKLRDCNVHFNDQPPAKNKEVFEEKKNNSTLFITEGDSAS
                     GSITKARDVDTQAVFSLRGKPLNCYGLTKKVVYENEEFNLLQHALNIEDGLDELRYNR
                     IILATDADVDGMHIRLLMMTFFLQFFPDLVKRGHLYILETPLFRVRNKQETIYCYEER
                     EKQAAMSKLGKNPEITRFKGLGEISPNEFGQFIGNDIRLQPVLLEQGDHIQQLLEYYM
                     GKNTQQRQEFIIDNLRVELDLVEE"
     gene            1090..1872
                     /locus_tag="VLL95_08715"
     CDS             1090..1872
                     /locus_tag="VLL95_08715"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF018696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSR38983.1"
                     /translation="MLEFHSDYKRYFDLQLDNARQSVLPFIESVRPLQPGMQVLEIGC
                     GQGSLLRAFSEKGVQCVGVEMYPLWLEKANEWLQPELQAGKVRLISSNIYDVDPQKDL
                     GTLFDIIVLKDVIEHIHDQPKLIAWMKTFLKPNGLIFFAFPPWYMPYGGHQQVLHGVL
                     GKLPYWHLLPMPLFKWLLRKTGNQLEEMVEIKETGISIERFERILKQTGYRIVKEQQW
                     MINPVYQYKFGWKPRKQWGIVNALPFIRNFLTTCSYYLVAAK"
BASE COUNT          528 a          438 c          482 g          433 t
ORIGIN      
        1 accagcaggc cttccgcgaa gcctttgtaa aaaccattcg cgaccatttc aagaaagatt
       61 acgacgcttc cgatatccgc acgtccattg ttgccgctat ctctgttcgg gtgcaggagc
      121 ccgtgtttga aagccagacc aaaaccaaac tgggcagcct caatgtgtat gaaagcggtc
      181 cgagtatgaa gaattttatc ggcgatttcc tggctaagga actcgataat ttcctgcata
      241 aaaatcccac ggtggccgat gccctgaaga agcgcatcga acaaagcgaa cgggaacgca
      301 aagaactgca gggcatcaaa aaaattgcca acgaaagggc caagaaagcg gcgctgaaca
      361 acaagaagct tcgcgactgc aacgtgcatt tcaacgatca gcccccggct aagaacaaag
      421 aagttttcga agagaaaaag aacaatagca ccttattcat caccgagggc gacagtgcca
      481 gtggctctat caccaaggct cgtgatgtgg atacgcaagc cgtattcagt ttgcggggta
      541 agccgctcaa ctgttatggc ctcacaaaaa aggtggtgta cgaaaacgaa gaattcaacc
      601 tgctgcagca tgcattaaac attgaagatg gattggacga gctgcgctac aatcgcatca
      661 tcctggccac cgatgccgat gtggatggca tgcacatccg gctgctgatg atgacatttt
      721 tcctgcagtt tttccccgac ctcgtgaagc gtggccacct gtatattttg gaaacgccct
      781 tgttccgggt gcgcaacaaa caggagacca tttactgcta cgaagaaaga gaaaagcagg
      841 cagccatgag caaattgggc aagaacccag agatcacccg attcaagggc ctcggtgaaa
      901 tttcgcccaa tgaatttgga cagttcattg gcaatgacat tcgcctgcaa ccggtactgc
      961 tggagcaagg cgatcacatt cagcaattgc tggagtatta catgggaaag aatacccagc
     1021 agcgacagga attcattatt gataaccttc gggtggaact ggacctggta gaagagtagg
     1081 aacaaaagaa tgctcgaatt tcattcagat tacaagcgtt atttcgattt gcagctggac
     1141 aatgcccgcc agtcggtatt gccgttcatt gaatcggtgc ggccattgca accgggcatg
     1201 caagtgctgg aaattggttg cgggcagggt tctttgttgc gtgccttttc agaaaaaggc
     1261 gtgcaatgcg taggcgtgga gatgtacccg ctgtggttgg agaaagccaa tgaatggttg
     1321 cagcctgaat tgcaagccgg caaagtgcga ctcatcagca gcaatatcta tgatgtggat
     1381 ccgcagaaag acctgggtac tttgttcgac atcattgtgt tgaaagacgt gatcgagcac
     1441 atccatgatc agcccaaact gatagcgtgg atgaaaacct ttctcaagcc taacggtctt
     1501 atcttctttg cttttccgcc gtggtacatg ccttatggcg gccatcagca ggtgctgcat
     1561 ggtgtgctgg gtaagttgcc ttactggcat ttgctgccga tgcctctttt caaatggttg
     1621 ctcaggaaaa ccggtaacca attagaggaa atggtagaga tcaaggaaac gggtatttcc
     1681 atcgaaaggt ttgaacgcat cctgaaacag accggctacc gcattgtgaa ggagcagcag
     1741 tggatgatca acccggtata ccaatataag tttggctgga aaccacgcaa gcaatggggc
     1801 atcgtcaacg cactgccttt cattcggaat tttttgacca cctgcagtta ctatttggta
     1861 gctgccaaat gatacagata t
//
LOCUS       DATIQF010000528         2130 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_236847,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000528 DATIQF010000000
VERSION     DATIQF010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236847"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1108
                     /locus_tag="VLL95_08720"
     CDS             <1..1108
                     /locus_tag="VLL95_08720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38984.1"
                     /translation="HSASGIIAREVFDAAADPNRFPEQLKYGVKPWQAKRMLWNTFNF
                     GGGNTIDSTQFSQEVGDFSPLLGKSIGELAGESRSQHKSQGFGVSRQRGTAREFFNTI
                     KGDKPANDLLDGVNATWNRIPGGTDISGMIDKMISEFNPLNPAASLPHLRSIIGAVQS
                     LEPSVWKDVKLKELQELVLKCAGIYAEATVAKPEIITADTVNVTFNVINRSNKTVMLN
                     TLAVGNLTTNLQVRLNNNRMFTQVMRPQFGSGMLETQPYWLRESQANGMYQISDQQLV
                     GLPENHPLSATLSLVVDSIFVNIKQPIQYRYVDPVKAEQYQPAYISNRFLLFNSPGII
                     LFKKNQADSASMQVNITGTTAARADGPAVLIGSA"
     gene            1121..2005
                     /locus_tag="VLL95_08725"
     CDS             1121..2005
                     /locus_tag="VLL95_08725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38985.1"
                     /translation="MEVKRPPVQWTGGDVYNVTQRIPNYLKGSNIETDVLDIAFRPGG
                     NFGEAEFANARRSIQYDHIPTQTWHYRDQVKVLHIDLKTVGRKVGYLPGAGDKVAAML
                     VQMGYEVTELKEDDLTAANLKQYDAVIMGVRAYNIHNYLAYKYNDLMQYVKQGGNLIV
                     QYNTSNFISQLKGKMAPYALNVGRTRITDENSPVSFLLPQHPVLNYPNKITQKDFEGW
                     VQERSTYQATTLDPHYVTPLGMHDTDDAQSNGSLAIAKYGKGNFVYASLVFFRQLPDG
                     VPGAYRLMANLIALPKNK"
BASE COUNT          612 a          514 c          518 g          486 t
ORIGIN      
        1 tcacagtgca tccggcatta ttgcccgtga agtttttgat gccgcagctg atccgaatcg
       61 ttttcctgag cagttgaagt atggcgtgaa gccatggcag gcgaaacgca tgctctggaa
      121 tactttcaat tttggcggag gcaacaccat cgattcgact cagttctccc aggaagttgg
      181 agacttttcg cccttactgg gcaaaagcat aggtgaactg gccggtgaaa gccgcagcca
      241 gcacaaaagc cagggcttcg gcgtgagcag gcagcgggga acagcccggg agtttttcaa
      301 taccatcaag ggcgacaaac ctgccaatga tctgttggat ggcgtgaatg ccacctggaa
      361 caggatcccg ggcggaaccg acatcagcgg catgatcgac aagatgatca gcgaattcaa
      421 ccccctgaac ccggcagcca gtttacccca cctgcgcagt attattggcg cagtgcaatc
      481 actggaacct tccgtttgga aggatgtaaa gttgaaagaa ctgcaggaac tggtgttgaa
      541 atgtgccggc atttatgctg aagccacagt agccaaacct gagatcataa cggctgacac
      601 ggttaatgtc actttcaatg tgatcaaccg cagcaacaaa acagtaatgt tgaacaccct
      661 tgcggtgggc aacctgacca caaacctgca ggtaagactt aataacaaca ggatgtttac
      721 gcaggtgatg cggccacaat ttggaagcgg catgctggag acacaaccgt actggcttcg
      781 cgaatcgcag gccaatggca tgtatcagat cagcgatcag caattggtgg ggctgcccga
      841 gaaccatcca ttgtctgcca ccctttcgct ggtggtagat tccatttttg taaacatcaa
      901 acagcccatt caataccgct acgttgatcc ggtaaaagcc gagcagtacc agccggcata
      961 tatctccaac cgattcttgt tgttcaacag tccaggcatc atccttttca aaaagaacca
     1021 ggctgattca gccagcatgc aggtgaatat taccggcacc acggctgccc gtgctgacgg
     1081 tcctgctgtg ctcatcggtt cggcataagg caagttgaaa atggaagtga aacgtcctcc
     1141 ggtgcaatgg acaggtggag atgtatacaa tgtaacacag cgaattccca actacctcaa
     1201 aggcagcaat attgaaaccg atgtactcga cattgctttc agaccgggag gtaattttgg
     1261 cgaggcagaa ttcgccaatg cccgcaggag cattcaatac gatcatatac ccacgcaaac
     1321 ctggcactac cgcgaccagg taaaagtgtt gcacattgac ctgaagacgg tgggcaggaa
     1381 agtaggctac ctgccaggcg ccggcgataa ggtagctgcc atgctggtgc aaatgggcta
     1441 cgaggtgaca gaactgaagg aggatgatct gacagcagcc aacctgaaac aatatgatgc
     1501 cgtgatcatg ggcgtaagag cttacaatat tcacaactac ctcgcctaca aatacaacga
     1561 cctgatgcaa tatgtgaagc agggtggcaa cctgattgtg caatacaaca ccagcaactt
     1621 catcagccaa ctgaaaggca agatggctcc ctatgcttta aacgttggtc gcaccaggat
     1681 cactgatgaa aattcaccgg tgagttttct gctgccgcag catcctgtgc taaactaccc
     1741 gaacaagatc acccaaaaag attttgaagg ctgggtgcag gaaagaagta cataccaggc
     1801 tacaacacta gatccgcatt atgtaacacc gttaggcatg catgatacgg atgacgccca
     1861 aagcaacggt agccttgcca ttgcaaaata tggaaaaggc aatttcgtgt atgcgagcct
     1921 cgttttcttt cggcaattac ctgatggcgt tccgggcgct tatcgcctga tggcaaattt
     1981 aattgcacta ccaaaaaata agtaagagaa tttaatgaaa taaaattgct gatatgttgt
     2041 cttctgaaaa aaaatactgg aataaatggt acatcattgt acttgcattt cttttattcc
     2101 agataatact ttattatttt ctttcagttt
//
LOCUS       DATIQF010000529         4514 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_24000, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000529 DATIQF010000000
VERSION     DATIQF010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4514
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24000"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..359
                     /locus_tag="VLL95_08730"
     CDS             <1..359
                     /locus_tag="VLL95_08730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38986.1"
                     /translation="QTIKGTKDPIWRHKAMHYRSELLWKQIQYIGELLDANNMYAWGH
                     LAIGSDYDGIVDPLNSFWTMEQYDELAGYLERHAYNYFDKQSSRLRNGFNIIGPDQLI
                     QQIFCDNAWNFFKRWF"
     gene            411..1037
                     /locus_tag="VLL95_08735"
     CDS             411..1037
                     /locus_tag="VLL95_08735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38987.1"
                     /translation="MPTANKNRGKIISFIIALVLFIIGNFIQRHYEKQQGTIEGLMAD
                     VEKKQEQFLKNTLLAKAQFSEGQLFITLGLMTADAMHPAENVFIPIQQNMTQGMDLLN
                     LTTPPSTQPDNQQQIDNVKSAFTTSIQQTGDISGPFTEAVALFNKLAGQAAVHEQTLA
                     DQLKTYRADKQKLQSASNIILWINTIILLIQLFFSSFYEMITEKKEAA"
     gene            1063..1650
                     /locus_tag="VLL95_08740"
     CDS             1063..1650
                     /locus_tag="VLL95_08740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38988.1"
                     /translation="MKPTILSLAVLFMMSCGDYKDPYANDNAANNQTKNTESASHTDS
                     KDASGTSSANEEEQTQTPTKAPAAQSSSLSEELFNAIADHRLHKFSQYNSGGGGEGMQ
                     STTWLDLCASGKYFFYNSSSVYINGDLRQSEESEEGTWKITSSGNDFGILFRNMKGEE
                     AGPVKIYFEDGKFFMDGQRWLRAARGEENGPQTCQ"
     gene            1720..2394
                     /locus_tag="VLL95_08745"
     CDS             1720..2394
                     /locus_tag="VLL95_08745"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF016277.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR38989.1"
                     /translation="MYYIPLRQPLDPAFMDGLLEMGWYRMSQHVFTTRHICLSETEVY
                     EVLWARIDLRTWQPTARHKRQLKQAQRFNITLQAATISPAIEKLYTLYRSVISFEASE
                     SVAAYLLEQQPHNFFPTLMWQVHDGDELIAVSYFDEGVNSAAGILTFFHPDYKKYSLG
                     LLLYLESVRHAAESGKQFFYPGYIALNNPKFDYKLLAGKEHIETWEFETMRWIPYAQS
                     KNANMQ"
     gene            complement(2430..2618)
                     /locus_tag="VLL95_08750"
     CDS             complement(2430..2618)
                     /locus_tag="VLL95_08750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR38990.1"
                     /translation="MEEQEINWVVISLFALVVGLGAIWLLKKNRRDKKRLQQQLDHER
                     KTPLPTGHDASDADTGNE"
     gene            2795..>4514
                     /locus_tag="VLL95_08755"
     CDS             2795..>4514
                     /locus_tag="VLL95_08755"
                     /inference="COORDINATES: protein motif:HMM:NF012618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HSR38991.1"
                     /translation="MHLLAFVLMVLPFGQNTSVAQEAEIIVQSGHSDDIQSTVWDTRN
                     NLLITGGFDGRIVLWDIDKTVQVATINTGISKLTCMAKSADGKWLAAGGIDKNVVLID
                     YASRKVVKKWRPFQYAVNDLAFSPDSKYLVAGSSDKTVWTYQIAQGTINSEKGVDDIY
                     SIRISPDSRHIFAGSRSGDIYKIPLSSVGDKTSWQTILHSEEQITAMDLSPNGRYIAF
                     GISGGYKDDVPYDGRLAVIDLQQNNKILFDTSDFSSSIGSHYSQIQWWSDAVFYYSNK
                     GDTLKTCNWANGMLTPTRHSEYSFFSLEPAMNWISLSQATEPVLYRPMQSLPSKNFKG
                     HTLAPQRVWMNDQQHLLVEYANGFKAWNLQLGKMQSVEEKLEPGKDDGFIISHNGKLT
                     VRKSVRFGAVVQEAGSLNEGDDAVLRELMGTKVTSLRFSPNDTYLVAMTANKEVYVYK
                     LDSSYEARFRLELPSEQNDLMEVPEIVFSPNEKHIAILAKSVFLVNLENGDGARLNAD
                     RNALQEDLSAVFSPDGNYLITAAHAIYSQEELPADTSNLEITFVPGGILQPDPFYLVQ
                     EPGRLMY"
BASE COUNT         1281 a         1140 c          991 g         1102 t
ORIGIN      
        1 atcaaaccat caagggcacc aaagacccga tctggcgaca caaagccatg cactaccgaa
       61 gcgaattgct gtggaagcaa atacaataca ttggtgagtt gcttgatgcc aacaatatgt
      121 atgcctgggg acatttggca attgggtccg attatgacgg cattgtagat ccactcaatt
      181 cattctggac catggagcaa tacgatgaat tggccggcta ccttgaaaga cacgcttata
      241 attatttcga caagcaaagc agccgattgc ggaatggttt caacatcatt ggccccgacc
      301 agcttattca acaaatcttc tgcgacaatg cctggaactt cttcaagcgt tggttctgat
      361 ccggctccat ttcataatca ctcctctttt tcaattcaaa aaaataatcc atgccaactg
      421 ccaacaaaaa ccggggcaag atcatttcgt tcatcattgc tttggtgctc tttataatcg
      481 gaaatttcat acagcgtcat tacgaaaaac agcaaggcac catcgaaggc ctgatggctg
      541 atgtagaaaa aaaacaggaa caattcctca agaatacact gctggcaaag gcgcagtttt
      601 ccgaaggcca attatttatt acgctgggac taatgacggc tgatgccatg catccggccg
      661 agaatgtgtt cattcccata cagcaaaaca tgactcaggg tatggattta ctgaacctca
      721 ccacccctcc ttcaacccaa cctgacaacc aacaacaaat cgacaatgtc aaaagtgctt
      781 tcaccacttc cattcagcaa accggggaca tttcaggtcc atttacagaa gcagtagcac
      841 tcttcaacaa actggcaggg caggctgctg tgcatgaaca gaccctcgcc gatcagctga
      901 agacttatcg tgctgacaaa caaaaattgc agtcagcttc caatatcatt ttgtggatca
      961 ataccatcat tcttctcatt caattgtttt tcagttcctt ctacgaaatg atcacggaaa
     1021 aaaaagaagc agcctgactt tcaccacctc aaaccaataa gcatgaaacc aaccattcta
     1081 tcccttgcag tcctttttat gatgtcctgc ggcgattaca aagatcccta tgccaacgac
     1141 aacgctgcga acaaccaaac aaagaataca gaatcggcct cccataccga ttcaaaagac
     1201 gcttcaggaa cctcatcggc aaacgaggag gaacaaacac aaaccccgac caaagcgcct
     1261 gctgcccaat cttcctcttt atcggaagag cttttcaatg ccattgcaga tcaccggctt
     1321 cataaattct cccaatacaa ttcgggtggc ggtggcgaag gcatgcaaag caccacatgg
     1381 ctggacttgt gtgccagcgg caagtatttt ttctacaatt caagttctgt ttacatcaat
     1441 ggcgacttga ggcaaagtga agaatcagaa gaaggaacct ggaagattac cagcagcggc
     1501 aacgattttg gcatcctgtt tcggaacatg aaaggcgagg aagccggccc ggtcaaaatc
     1561 tacttcgagg atgggaaatt cttcatggac gggcagcgct ggcttcgtgc agcccgtggc
     1621 gaagagaacg gtccacaaac ctgccaatag caagaagaga acggcctgtt tggcaaccgg
     1681 cttgcatttt aaaaataaac gccagctatt tttgctgtca tgtattacat ccctctgcgt
     1741 cagccattgg acccggcttt tatggatggc ctgctcgaaa tgggctggta ccggatgtcg
     1801 cagcatgtat ttaccacccg tcacatctgt ctcagcgaaa cagaagtata tgaagtactc
     1861 tgggcacgca ttgatctcag gacatggcag ccaaccgccc gacacaaaag acaattgaaa
     1921 caggcacaac gattcaacat cacactgcag gcggccacca tttctccagc cattgaaaag
     1981 ctatataccc tgtaccgttc cgttatctct tttgaagcca gcgaatctgt tgcagcttat
     2041 ttgctggaac aacaacctca caatttcttt cccacgctga tgtggcaggt acacgatggt
     2101 gatgaactca ttgcggtcag ctacttcgat gaaggcgtca acagtgccgc aggcatcctt
     2161 actttctttc accccgatta caagaagtac agtcttggcc tgttgctata ccttgaaagt
     2221 gtgcgtcatg ccgcggaatc aggcaaacag tttttttacc ccgggtatat agcgctgaat
     2281 aatcccaagt ttgattacaa actgctggcc ggcaaggaac acatcgagac ctgggaattc
     2341 gaaaccatgc gttggatacc ttacgcacaa agcaagaatg ctaacatgca ataagcctca
     2401 ttgcaaaact gcctcccggg ctcactttgc tattcattac cggtatcagc atctgatgca
     2461 tcatgccctg ttggcaaagg cgtctttcgc tcatggtcca attgctgctg cagccttttt
     2521 ttgtccctgc ggtttttttt cagcagccaa atggccccca atcccaccac cagggcaaac
     2581 agcgaaatga cgacccagtt gatttcctgc tcttccattg gtattgctgg ttattgatga
     2641 ataacaagtg ccggtgtgca ccatacgcct ttttgaaaat accataactt gggtataatc
     2701 aaacgccagt gccatcctaa ttttatttcg ccaaaaccca agccttcatt tgatgcgtgt
     2761 tataaaattg tttccccttg tccacaaaat aaaaatgcat cttcttgctt tcgtgctaat
     2821 ggtgctgcca ttcggtcaaa atacttccgt cgcccaggag gctgagatca tcgttcaatc
     2881 agggcattcc gacgacatcc aatctacagt gtgggacacg aggaacaacc tgctcattac
     2941 cggtggcttc gatggccgta ttgtactttg ggacatcgac aaaacagtac aggtagccac
     3001 cataaatacc ggcatctcca aacttacctg catggcaaaa tcggcagatg gtaaatggct
     3061 ggcagcgggt ggcatcgaca aaaacgtggt gctgattgat tatgccagcc ggaaggtggt
     3121 gaaaaagtgg cggccttttc aatacgccgt aaatgacctt gccttttcgc ccgattccaa
     3181 atacctggta gcggggtcca gcgataagac cgtttggacc taccagatag cacaaggaac
     3241 aataaacagc gaaaagggtg ttgatgacat ctacagcatt cgcatttcac ctgacagcag
     3301 gcacatattt gcaggaagcc gttccggtga tatctataag ataccattga gcagtgttgg
     3361 cgataaaaca agctggcaaa ccatccttca ttctgaagaa caaataaccg ccatggacct
     3421 gtcgccaaac ggcagataca ttgccttcgg catttcgggt gggtataaag atgatgttcc
     3481 ttatgacggg cgcctggctg taattgatct acagcagaac aacaaaattc tattcgacac
     3541 ttccgacttc agcagttcca tcggctctca ctatagccaa atccaatggt ggagcgacgc
     3601 tgtgttctat tactccaaca agggagacac actcaaaacc tgcaattggg ccaatggaat
     3661 gcttaccccc accaggcaca gcgaatattc gtttttcagc cttgagcctg caatgaattg
     3721 gatttcgttg tctcaggcta ccgaaccagt tttgtacagg ccgatgcaat cattgccatc
     3781 aaagaatttc aaagggcata cgttggcccc acagcgtgtt tggatgaacg atcagcaaca
     3841 cctgttggtg gaatatgcca atggcttcaa ggcctggaat ttgcagttgg gcaaaatgca
     3901 aagcgtagaa gaaaaactgg aacccggtaa agacgatgga ttcatcataa gtcacaatgg
     3961 aaaattgact gtaaggaaaa gtgttcgttt cggggcagta gtacaggagg ccggatcatt
     4021 gaatgaagga gatgatgctg tgctgcgtga actgatgggc accaaagtta cctctctccg
     4081 cttttcaccc aacgatacct acctggttgc aatgacagca aacaaggagg tatacgttta
     4141 caagctcgat tccagttatg aagcgaggtt ccggttggaa ctcccttctg agcaaaatga
     4201 tcttatggaa gtgccggaga tcgttttttc tcccaatgag aagcatatcg ctatcctggc
     4261 caaatcggtt ttcctggtga acctggaaaa cggtgatggc gccaggctga atgcagaccg
     4321 caatgctttg caggaagacc tgtcggctgt tttttctccc gatggcaatt acctcataac
     4381 agcagcccat gccatataca gccaggaaga actgcccgca gatacttcca acctcgaaat
     4441 cacttttgtg ccgggaggca tcctgcaacc cgatccgttt tacctggtac aggaacccgg
     4501 aaggttgatg tact
//
LOCUS       DATIQF010000530         2295 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_206524,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000530 DATIQF010000000
VERSION     DATIQF010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2295)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2295
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206524"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..282
                     /locus_tag="VLL95_08760"
     CDS             <1..282
                     /locus_tag="VLL95_08760"
                     /inference="COORDINATES: protein motif:HMM:NF022188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2520 domain-containing protein"
                     /protein_id="HSR38992.1"
                     /translation="SAVMVNNFSNHLYTLAKDYCAQHELDFKLLLPLIKETVERLEAG
                     DPTDWQTGPAIRNDEATMQQHLQLLESNPTLTNIYRLFSESIRAYYSSN"
     gene            409..744
                     /locus_tag="VLL95_08765"
     CDS             409..744
                     /locus_tag="VLL95_08765"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HSR38993.1"
                     /translation="MYTIHFKFEEKGQEPVTLTNVEAGDSILEIALKNNIELHHNCGG
                     VCACSTCHVYVEQGEDYLPEITDREEDFIDRAVNPKLNSRLGCQCVLAAGSGVLTVTL
                     PDQSQFLGE"
     gene            805..1041
                     /gene="iscX"
                     /locus_tag="VLL95_08770"
     CDS             805..1041
                     /gene="iscX"
                     /locus_tag="VLL95_08770"
                     /inference="COORDINATES: protein motif:HMM:NF016284.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HSR38994.1"
                     /translation="MSYEPPINWTDYEDIAIKLYERFGDEFGESKIYRIRFTDLLEWV
                     LQIPGFEGKREESNEGHLEMIQSSWVYEWRDNQK"
     gene            1136..1657
                     /locus_tag="VLL95_08775"
     CDS             1136..1657
                     /locus_tag="VLL95_08775"
                     /inference="COORDINATES: protein motif:HMM:TIGR01670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HSR38995.1"
                     /translation="MNVLSLFKPIKAFAFDVDGVLTDGTLFLMPGGEMVRRMHIKDGY
                     ALQLAVKKGYHVFVISGGKSELVEQRLHKLGVKEVHMQVHNKTEVLQQCMQQYSVQPQ
                     EVLYMGDDMPDLEVMQQVGLPCAPADACSEIKAVSKYISDINGGFGCARDVIEKVLKL
                     NGHWLHNQDVQSR"
     gene            1690..>2295
                     /locus_tag="VLL95_08780"
     CDS             1690..>2295
                     /locus_tag="VLL95_08780"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HSR38996.1"
                     /translation="MRLIGQFLKLLRWPNLVFIVITQVLFHFCVILPSAYGSHYSFPL
                     RLDQHLFWSIVVASVLIAGAGYIINDYFDLNIDEVNKPQRVIVNKSISRRMAIFWHGL
                     LSTIGLALSAYVSFRLSNPFILLGNIVCVALLWVYSTTYKRRLIIGNVLISLMTSWVI
                     LILIVAELPGWWTGQLHREIEMETAARLSRIGLLYASFAFVI"
BASE COUNT          608 a          531 c          549 g          607 t
ORIGIN      
        1 tcggcggtta tggtcaacaa cttttccaat cacctgtaca ctttggccaa agactattgt
       61 gcccaacatg agctggattt caagttgctg cttcccctga taaaagaaac tgtcgaacgg
      121 ctggaggcag gcgatccaac tgattggcaa acaggccctg ccatccggaa tgatgaagcg
      181 accatgcagc aacatttaca gttattggag tcaaatccaa cattgaccaa tatttatcgc
      241 ctgttcagcg aaagtatccg ggcgtattat tccagcaatt gacaggctgc ctttccttat
      301 gaaatgcgga aaatcaggca gctggaaaac cttatggccc ggatatggtt tagatggcag
      361 gtcgcagtcc ttatttttgc cggcccttac caatttagca agctatctat gtatacgatc
      421 cattttaagt ttgaggagaa aggccaggaa ccggtaacac ttaccaatgt ggaagcgggt
      481 gactccattt tagaaattgc ccttaagaac aacattgaac tgcatcacaa ctgcggcggc
      541 gtttgcgcct gcagcacctg ccatgtatac gtggagcaag gagaagacta cctgcctgaa
      601 atcaccgatc gtgaagagga ttttatcgac cgggctgtca accccaaact gaacagcagg
      661 cttggctgcc agtgtgtatt ggctgccggc agtggcgtat tgactgtcac tttgcctgat
      721 caatcgcaat tcctgggtga ataatgtgcc tccttccccc ggccccaaca atcaacaacc
      781 acctatttca actttgagca ttttatgagc tacgaacccc ctattaactg gacagattat
      841 gaagacatcg ccatcaaact ttacgaacgt tttggcgatg aatttggcga aagcaaaata
      901 tacaggatcc gttttacgga tttgctggaa tgggtgctcc aaatacccgg ttttgaaggc
      961 aagcgagaag aaagcaacga aggccacctt gaaatgatcc agagcagctg ggtatatgag
     1021 tggcgcgaca accagaaata acgcattgtg cccatattgt gaaaacacag cctgcttatc
     1081 aggctgtgtt ttctgttatt tttaccccgg catgatcatc agccattagc agattatgaa
     1141 tgtgctcagt ctctttaaac ccattaaagc cttcgcattt gatgtggatg gtgtgcttac
     1201 cgacggcacc ctttttttaa tgcccggtgg cgaaatggtg cgaaggatgc atatcaagga
     1261 tggctatgca ttgcagttgg ccgtaaaaaa gggctaccac gtgtttgtga tttcaggagg
     1321 caaatcggag ctggtggaac aacgcttgca taagttgggc gtaaaggaag tgcacatgca
     1381 agtgcacaac aaaaccgagg ttttgcaaca atgcatgcag cagtattcgg tccaaccaca
     1441 ggaagtgctt tacatgggcg atgatatgcc cgacctcgag gtgatgcagc aggtaggact
     1501 cccctgtgcc cccgccgatg cctgttcaga aataaaagca gtgagtaaat acatctcaga
     1561 catcaatggc ggctttgggt gtgcaaggga tgtgattgaa aaagtactca agttgaacgg
     1621 gcactggctc cacaaccagg atgtgcaaag ccgataatct aattttaaaa tttcaagcaa
     1681 gaacctgtga tgcgattaat tggccaattt ctaaaactat tgcggtggcc aaatttggtt
     1741 ttcatagtca ttacacaagt actgtttcat ttttgtgtga tcctaccgtc agcatatggc
     1801 tctcactatt catttccgct caggctggat cagcatttgt tctggagcat cgtcgtggca
     1861 tctgttttaa ttgctggtgc cggctacatc atcaatgatt atttcgacct caatatcgac
     1921 gaggtaaaca aaccccagcg ggttatcgtc aacaaatcga tcagccggcg catggccatc
     1981 ttctggcatg gattattgag caccatcggg ttggcattaa gtgcttatgt aagtttcagg
     2041 ctcagcaatc cgttcatact gctcggcaat attgtatgtg tcgcgttgct gtgggtgtac
     2101 tccacaactt acaaacgccg gcttatcatt ggcaacgtgc tcatttcact gatgacatcc
     2161 tgggtcatcc tcatcctgat cgtagctgaa ttgcccggtt ggtggaccgg ccagttgcac
     2221 agagaaatag aaatggaaac tgctgccagg ctttcacgca ttggcttgct gtatgccagt
     2281 tttgcatttg tgatc
//
LOCUS       DATIQF010000531         2911 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_191085,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000531 DATIQF010000000
VERSION     DATIQF010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2911
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191085"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1233)
                     /locus_tag="VLL95_08785"
     CDS             complement(<1..1233)
                     /locus_tag="VLL95_08785"
                     /inference="COORDINATES: protein motif:HMM:NF037626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HSR38997.1"
                     /translation="MPFQLQSNYQPAGDQPNAIAQLTQGILEGEKHQVLLGVTGSGKT
                     FTMANVIQNVQRPTLVLTHNKTLVAQLYGEFKQFFPDNAVGYFVSYYDYYQPEAYIPV
                     SDTYIEKDLNINEELDKLRLQATSELLSGRRDIIVVASVSCIYGMGNPTEFENGIVRI
                     AQGQTISRQGFLHSLVNSLYSRTTTDFNRGTFRVKGDTVDINLPYVDWGYRISFFGDE
                     IETIETLDIKTGKRIGRVENAAIFPANLYLAPKDMMVQILAEIQDEMMRQVEYFQSQG
                     KFIEAQRLKERTEYDLEMIRELGYCNGVENYSRFFDRRNPGTRPFCLLDYFPKDFLCI
                     IDESHQTIPQVAGMYGGDRSRKMVLVDYGFRLPSALDNRPLNFHEFEYMVNQVVYVSA
                     TPGDYELEQTGGVVVEQVV"
     gene            1425..1961
                     /locus_tag="VLL95_08790"
     CDS             1425..1961
                     /locus_tag="VLL95_08790"
                     /inference="COORDINATES: protein motif:HMM:NF022636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2975 domain-containing protein"
                     /protein_id="HSR38998.1"
                     /translation="MEISQKTLDTAIKVLTWIIFIGLCIEAGAILFNFVYSAFRPVAA
                     NNLYKGLDLSRLLQNDPGHYWAIGTLVFSVMALKAQVFYKVITTHQKMDANKPFSPEV
                     AAGIRQISYYALWTGLLGLIAEGYLDRLTKLGLDVDAAGTFLDDSKAMILMAMVVFFI
                     ARIFQKGIELQTENDLTV"
     gene            1965..2177
                     /locus_tag="VLL95_08795"
     CDS             1965..2177
                     /locus_tag="VLL95_08795"
                     /inference="COORDINATES: protein motif:HMM:NF024835.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSR38999.1"
                     /translation="MPIVVNLDVMMAKRKMSLNELADKVGLTLANLSILKTGKAKAVR
                     FSTLEAICKVLDCQPGDILEFVADKQ"
     gene            2581..>2911
                     /locus_tag="VLL95_08800"
     CDS             2581..>2911
                     /locus_tag="VLL95_08800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39000.1"
                     /translation="MKKLYAALLTISLWCGATWHAYAIDTTNTRLLWQPAISRQHIAF
                     IYAEDLWVANRDGSNPRRLSVDAGTESNPVFSPDGQSIAFSAQYDGNTDVFVVPTTGG
                     VPRRLTWH"
BASE COUNT          659 a          811 c          758 g          683 t
ORIGIN      
        1 caccacctgc tccaccacca cgccgccggt ctgttccagt tcgtagtcgc cgggcgtggc
       61 gctcacatac accacctggt tcaccatgta ttcaaactca tgaaaattca gtggccggtt
      121 gtcgagggct gagggcaatc ggaaaccata atccaccagc accatcttgc ggctgcggtc
      181 gccgccatac atgcccgcaa cctgcggaat ggtctggtgg ctctcatcaa tgatgcagag
      241 aaaatctttg gggaaataat caagcaaaca gaaggggcgg gtgcccgggt tgcgacgatc
      301 gaagaacctc gaatagtttt cgacaccatt gcagtagccc agttcgcgga tcatctcgag
      361 gtcgtattcg gtgcgctcct tcagtcgctg cgcttctatg aatttgccct ggctttggaa
      421 gtactccacc tgccgcatca tctcatcctg tatctcggcc agtatttgca ccatcatgtc
      481 tttgggcgcc aggtagaggt tggcgggaaa gatggcggca ttttctaccc ggccgatgcg
      541 tttgccggtt ttgatatcga gggtttcgat ggtctcaatc tcatctccaa aaaaactgat
      601 gcggtagccc cagtctacat aaggcaggtt gatgtccacc gtatcgccct tcacccgaaa
      661 ggtgccgcgg ttgaaatcgg tggtggtgcg gctgtacagg ctgttcacca ggctgtgcag
      721 gaaaccctgc cggctgatgg tttgcccctg cgcaatccgt acgattccgt tttcaaattc
      781 agtagggttg cccataccgt agatgcagct caccgaggcc actacaatga tatcgcggcg
      841 gccgctcagc agttcgctgg tggcctgcag gcgcagcttg tcgagctctt cattgatgtt
      901 gaggtccttc tcaatgtaag tgtcgctgac ggggatatag gcttcgggct ggtagtagtc
      961 gtaatagctc acaaagtagc cgacggcgtt gtccgggaag aactgtttga actcaccgta
     1021 gagttgcgct accagggttt tgttgtgggt gagtaccagg gtgggccgct gcacgttctg
     1081 gatcacgttg gccatggtga aggtcttgcc gctgccggta acgcccagca acacctggtg
     1141 cttctcgcct tcgagaatgc cctgggtaag ttgggcaatg gcattgggct ggtcgccggc
     1201 cggctggtaa tttgattgga gctggaaggg catgggacga agttaatggg accggctatt
     1261 gatgggcacc gggcggtcga aggaggccac ttcagctggg ggtgacggat gcccggaaac
     1321 gggggaattg gcacccctaa aaaataattc gagaaatatt tattgttatt caataaatat
     1381 tcattgatat ttgcaaagtc attccgaatc gaaaaacctc atttatggaa atcagtcaaa
     1441 aaacactgga caccgccatc aaggtcctca cctggatcat cttcatcggc ctgtgcatag
     1501 aagcaggcgc catcctcttc aatttcgtgt acagcgcctt ccggcccgtg gcagcgaaca
     1561 atctgtacaa gggcctcgat ttgagccgcc tccttcaaaa cgatcccggg cattactggg
     1621 ccatcggcac cctggttttc tcggtaatgg cgctgaaagc gcaggtgttt tacaaagtga
     1681 tcaccaccca ccagaaaatg gatgccaaca aaccattcag ccctgaagtg gcagccggca
     1741 tccggcagat cagctactat gccctgtgga cggggctgct cggccttatt gccgagggct
     1801 acctcgacag gttgaccaaa ctcggccttg atgtggacgc cgccggcacc ttcctggacg
     1861 acagcaaagc catgatcctg atggccatgg tcgtgttttt catcgcccgg atctttcaga
     1921 aaggcatcga actccaaacc gaaaatgact taaccgtata acctatgccc attgttgtaa
     1981 acctcgacgt gatgatggcc aaacggaaaa tgtcgctcaa cgaactggcc gacaaagtgg
     2041 gtcttaccct ggccaacctg tccatcctca aaaccggcaa agccaaagcc gtacgcttca
     2101 gcaccctcga agccatctgc aaagttcttg actgtcagcc cggcgatatc ctggaattcg
     2161 tggcagataa acagtaacat cttgtgttat taagaatctc aagattgatg gctctcgctt
     2221 acatgtgaat gacatcaggg ctcaaaagtt cggcactaca gtagcacagc ggctaaatca
     2281 gggaaccctc ccgagatcgg ggtgtcatcc ctgcccgacc ggcaggcggg gatctcgggg
     2341 gccctttttg ggtacctttt tgggcaagca aaaaggtaca aatcattgct gtcaaaattt
     2401 tcaaccggtt aatttgcgtt attgccattt caaatgccac gcactgttaa ttaaaccgtt
     2461 cctccgcatt ccatgccact gaaccacctg ccttttgcat tacaaggcag caccgctatc
     2521 tttaaacggc acccttccgc acaacggctc ggtgctgttt gccattttta aatcatcatc
     2581 atgaaaaaat tgtatgctgc gctgctcacc atctctcttt ggtgcggcgc cacctggcat
     2641 gcctatgcca ttgataccac caacacaagg ctgctctggc agcctgccat cagcaggcaa
     2701 cacattgcct ttatttatgc cgaagacctg tgggtggcca accgcgatgg cagcaacccc
     2761 cgccgcctgt ccgtggatgc cggcaccgaa agcaaccccg tgttttcgcc cgacgggcaa
     2821 agcattgcct tcagcgccca gtacgatggc aataccgatg tgttcgtagt gcccaccacg
     2881 ggtggcgttc cccgacgcct cacctggcat c
//
LOCUS       DATIQF010000532         2760 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_38878, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000532 DATIQF010000000
VERSION     DATIQF010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2760
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38878"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..639
                     /locus_tag="VLL95_08805"
     CDS             <1..639
                     /locus_tag="VLL95_08805"
                     /inference="COORDINATES: protein motif:HMM:NF026018.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis C-terminal
                     domain-containing protein"
                     /protein_id="HSR39001.1"
                     /translation="PFFFKQSVDKNAPRTYARVMKFFVLACCLMWLGIALALPLIAKL
                     AYGENYDAYSEGIGIIPILALASVFLGIYYNLSIWYKLTNRTWSGAWITLGGAAITIL
                     LNIWWIPLFGYTGSAWATFTCYASMMLVSYWLGQKHFPVPYATKKLMAYIIIAVVFFL
                     VFEVALRNGLSNTLWQMAVGAILFLMYLLFILKVEKKEFATLPVVGRFIARL"
     gene            complement(623..1075)
                     /locus_tag="VLL95_08810"
     CDS             complement(623..1075)
                     /locus_tag="VLL95_08810"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HSR39002.1"
                     /translation="MQLHKQIIIERNPVEVLQAFIFSKHTRQWWYGCETYFDLATHSF
                     SWQWRNPDGAFQYITHGRIKQYEAGLFLELEEVWQYDYQKTNPIGPVGLLLECTPQAG
                     HTLLIVKHFGFNTGNLMWDEYYEAVDKGWDAVLPRLKEHLEKPATAWQ"
     gene            1214..1807
                     /locus_tag="VLL95_08815"
     CDS             1214..1807
                     /locus_tag="VLL95_08815"
                     /inference="COORDINATES: protein motif:HMM:NF025431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4255 domain-containing protein"
                     /protein_id="HSR39003.1"
                     /translation="MIDKALAFLAQEANAYFDARFGPSTQKWITLGNIAKLADAEAPG
                     NGGGAEAANTLLGLVNIEEDRIAKNPENVVRTVDGIVYRNPKIHLNLYALFAVAHSNY
                     PIALQTLATIIQCFQSQRVFDAGSHPGMDPALEKISLDLFTLNFEQVNHLWSTLGGKY
                     LPSVLYKVRVVGIEDTERQRGGDLIIEIQINERMMKQ"
     gene            1859..>2760
                     /locus_tag="VLL95_08820"
     CDS             1859..>2760
                     /locus_tag="VLL95_08820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39004.1"
                     /translation="MKYTTLYTIELLHDYFTNGRAGDILFTPTEACAQTLRNIRAFTK
                     TWQNKLYVIVPTNDGTHPAVPLPPQVLFEFYWQPVDARFLTYTEISLANGKRLYCQNA
                     IAAERGGKKYLHPLPALHNAAQSYSAGSFVSDGSGHCFEALANLSGGNNLGNASQWAN
                     RGAVAYLSADQLVTCSSGIPVLNVQPSDTAVHVDLFAFNPLTNYPDALVRSDNFSHPA
                     PVAAQAIDMRLFPAGLYRAVVNGTADQFIYLDSSGAWQAEMGIISIYHHATLPAANAL
                     TGPGGELLNPAFVIRLAPPTVIWQ"
BASE COUNT          678 a          737 c          662 g          683 t
ORIGIN      
        1 cccttcttct tcaagcaaag cgttgataaa aatgcgcccc gcacctacgc cagggtgatg
       61 aagttttttg tgctggcctg ctgcctcatg tggctgggca tagcgctggc attaccgctc
      121 attgccaaac tggcttatgg cgaaaactat gacgcctaca gcgagggcat cggcatcatt
      181 cccattctgg cattggccag tgtgttcctt ggcatttact acaacctgag catttggtac
      241 aaactcacca accgtacctg gagtggtgcg tggatcacgc tgggcggcgc tgccatcacc
      301 atcctgctca atatctggtg gatccccttg tttggataca ccggcagtgc ctgggccact
      361 ttcacctgtt atgcctccat gatgctggtg agctactggc tgggacaaaa acatttcccg
      421 gtgccttatg ccactaaaaa actaatggca tacatcatca ttgcggtggt ctttttcctc
      481 gtgtttgagg tggcgttgcg caacgggctc agtaatactt tatggcaaat ggccgtgggc
      541 gccattcttt tcctgatgta ccttttgttc atattgaaag tggagaagaa agagtttgcc
      601 acgttgccgg tagtaggcag gttcattgcc aggctgtagc cggcttttcc aggtgttctt
      661 tcaatcgtgg cagtacggca tcccagcctt tgtccacggc ctcatagtat tcatcccaca
      721 tcaggttgcc ggtattgaat ccgaaatgtt ttacgatcag taaggtgtgg ccggcctgcg
      781 gggtgcattc cagcaacaag ccaaccggac caataggatt cgttttctgg taatcatatt
      841 gccatacctc ttccagttcc aggaacaaac cggcttcata ctgtttgata cggccgtggg
      901 tgatgtattg aaacgcacca tcgggattgc gccactgcca gctgaagctg tgcgttgcca
      961 aatcgaaata agtttcgcaa ccataccacc attgacgtgt gtgctttgaa aaaataaaag
     1021 cctgcaacac ttcaacaggg ttcctctcga tgattatttg cttgtggagt tgcatggaat
     1081 ttgacaagta tcaaaaaatg acaacttacg caaaattaac cgcccggaca cttgcaattg
     1141 tgtaaccgtc cgactacctt gttagaagta agtacaaaaa cacacaaccg cccacctcgc
     1201 taaccaacca acaatgattg acaaagccct ggcattcctt gcacaggaag ccaatgccta
     1261 ttttgatgcc cgtttcggtc cgagtacaca gaagtggatc accctgggca acatcgcaaa
     1321 gctggcagat gctgaagcac ccggcaatgg cggaggtgcg gaagcagcca ataccctgct
     1381 cggtttggtc aacatagaag aagaccgcat cgcaaaaaat cctgaaaacg tagtacgcac
     1441 cgtggatggc attgtgtacc gcaatccaaa aatccacctc aacctgtatg cattgtttgc
     1501 cgttgcccac agcaactatc caattgcatt gcaaaccctt gccaccatta tccagtgttt
     1561 tcaaagtcag cgggtatttg atgccggaag ccatcctggc atggatcctg cattggaaaa
     1621 gatcagcctc gatcttttca cgctcaactt cgaacaggtg aaccatctct ggagcacact
     1681 gggtggtaag tatctccctt ctgtattgta caaagtgagg gtggtaggta ttgaagacac
     1741 tgaacgtcaa cgcggcggcg acctgatcat agaaattcaa atcaacgaac gcatgatgaa
     1801 acaataaacg atccgctctt tcaccgccaa caacttttca gccactcatt gcagtgttat
     1861 gaaatacacc acactctata ccatcgaact gctgcacgac tattttacca acggccgcgc
     1921 cggcgacatc ctgtttacgc ccacggaggc gtgtgcacaa acgctcagga acatccgggc
     1981 tttcaccaaa acctggcaaa acaaattgta tgtgatagtg ccgaccaatg atggcaccca
     2041 tcctgcagta cccttgccgc cacaggtatt gtttgagttt tattggcaac ccgttgatgc
     2101 ccggtttctc acttacaccg agatcagcct ggccaatggc aaaagactgt attgccaaaa
     2161 tgccattgcc gccgaaagag gcggaaagaa atacctgcat ccattgcctg ccctgcacaa
     2221 tgcagcgcag tcctatagcg ctggttcttt tgtaagtgat ggcagtgggc attgctttga
     2281 agcattggcc aatttgagcg ggggcaacaa cctcggcaat gcttcgcaat gggccaatcg
     2341 cggtgctgtt gcgtatttgt cggccgatca attggtgaca tgcagcagtg gcattcctgt
     2401 attgaatgtg cagccatccg atacagcagt ccacgtggat ctgttcgctt tcaatccgtt
     2461 gaccaattac cccgatgcac tggtgcggag cgacaatttc agtcaccccg ctcctgttgc
     2521 agcacaagcc attgacatgc gtttgtttcc cgccgggttg tacagggccg tggtaaatgg
     2581 tacagccgat cagttcattt acctggacag cagcggagcc tggcaggcag aaatggggat
     2641 catcagcatt taccaccacg ccactttgcc cgccgccaat gcattaaccg gcccgggcgg
     2701 agagttgctc aatccagcct ttgtgattcg gctggcgccg ccaactgtga tctggcagta
//
LOCUS       DATIQF010000533         5574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_267295,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000533 DATIQF010000000
VERSION     DATIQF010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5574
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267295"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1210
                     /locus_tag="VLL95_08825"
     CDS             <1..1210
                     /locus_tag="VLL95_08825"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HSR39005.1"
                     /translation="ALLLNQVFGNPHSTNPTSRLSSQLIDEARQTIINHFKAYDYQLV
                     FTANASQALKIIGEGYPFEENGHFLLLFDNHNSVNGIREYSRVKGAAHTYSPVNIEDL
                     RINEPMLTEYLSAFPDKQNKLFAMPAQSNVSGVKHDLKWVELAQQQGWDVLLDAAAYV
                     PSNTLDLSEVQPEFVSMSFYKIFGYPTGLGALLIKKSVFNKLHKNWFAGGTVKFVSVS
                     SDNFFLAENYERFEDGTLNYLGIPALTIGFNFINRIGMEVINRRVTLLTAWLLEQLLA
                     LQHSNGEPLVHVFGPRDTADRGATIIFNVFGKDGQPLPYWEVEAAANATNISLRTGCF
                     CNPGIDEINNCLSSEELAGYFSSHSGGDFADMIVALGRMRGAIRISLGLASNFSDVYR
                     FIIFLKRYLQ"
     gene            complement(1239..1439)
                     /locus_tag="VLL95_08830"
     CDS             complement(1239..1439)
                     /locus_tag="VLL95_08830"
                     /inference="COORDINATES: protein motif:HMM:NF024835.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSR39006.1"
                     /translation="MQNSIKVQRAIHSMTQAELAEKIGVSRQTINAMESNKYVPSTVL
                     ALKIARLFNVKVEDIFTLEETD"
     gene            complement(1451..1888)
                     /locus_tag="VLL95_08835"
     CDS             complement(1451..1888)
                     /locus_tag="VLL95_08835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39007.1"
                     /translation="MNGTISLPTRYTWIGLAIFLPCAILGALYLHLNVELPWLSLPKK
                     ASELFHGNSNLTDELSLSGTIAGLLLMSFARTRHEDEFIQSLRLQSWHWAVLANFLIL
                     IIAIWIVYDIHFLEFMVYNMLTVPLIFLLRFHYLLYKNRSAND"
     gene            2046..2618
                     /locus_tag="VLL95_08840"
     CDS             2046..2618
                     /locus_tag="VLL95_08840"
                     /inference="COORDINATES: protein motif:HMM:NF014025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HSR39008.1"
                     /translation="MNWNAILTISFTLFAVIDIIGSIPLLISLKHKMGGINEAKATLI
                     SGGLMILFLFVGEKFLNILGIDVKSFAVGGSIVIFILGLEMVLGVEFFKSDGDPKTGT
                     VVPIAFPLIAGSGTLTTIISLRANYDEIPVLIGILLNLVFIFMVLKSLDIIRKLLGDA
                     GMLAVRKFFGVVLLAIAVKIFATNAGGLIQ"
     gene            2670..2744
                     /locus_tag="VLL95_08845"
     tRNA            2670..2744
                     /locus_tag="VLL95_08845"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2703..2705,aa:Arg,seq:ccg)
     gene            complement(2915..4036)
                     /locus_tag="VLL95_08850"
     CDS             complement(2915..4036)
                     /locus_tag="VLL95_08850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39009.1"
                     /translation="MIKYHLFLIIGFSFCINAIGQVFTNREIDPLDSLARVSAKKKEY
                     PYALPILGKKAVAAGFDLPYSAGMSVQYFTQTSDIILENLKVGFNGGEMIDLSGLVKF
                     DLAKARASALTFRPDVWVFPFLNVYGILGRAQASTEVKYRVDAPEDITNNVPILSGAS
                     LVEFQTTTYGFGVMPAIGIKGAFLILDMNIAWTDVPQLSRPTRTFVIGPRLGKNFKLK
                     KPEQSIAVWVGGFRVSLDAASEGSLPLNEALDVDEWGGRIDAAGNKVAAGQVKVDTWW
                     ASLSPIEQRNPLNIARYNAANRALATAGKLVEAADNAINTAASSTVEYSLDRRPDDPW
                     NFLTGMQYQFNKHWMLRLEAGYFSSRTQFVCGVQYRFGL"
     gene            4345..4779
                     /locus_tag="VLL95_08855"
     CDS             4345..4779
                     /locus_tag="VLL95_08855"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSR39010.1"
                     /translation="MKYSLLAVFLLTAFQVSFAQNSPAEKYVKAFSERKNKWLIEKNY
                     DSLKAMLDNRCLYIHSNGWSQTAADVIKDLQTGKMVYNKVSITESQARQFESMVIVTG
                     KGNFEGSVDQKPFNIRLAYTEVYIKRKDNWKLVSRQSAKLEQ"
     gene            4878..>5574
                     /locus_tag="VLL95_08860"
     CDS             4878..>5574
                     /locus_tag="VLL95_08860"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR39011.1"
                     /translation="MNLQLQDQHFIVGGATSGFGKAVAEALLAEGANVIAIARTEEKL
                     QELQQSHPYKVEIFVGDITSPGAVQALKKQLGNKRVDGMLVNAGGPPAMTALEAGLQD
                     WDRAYEQVLRWKIDMVQTFLPGMIEHNYGRIVFVESASVKQPMENLVLSNAMRLAVVG
                     YAKTLSQEVAHQGVTLNIMAPGYHATSAMERLFKKKSEQTGMSIDDAMLQYVSQTRVG
                     FLGAAEDFASLALW"
BASE COUNT         1452 a         1283 c         1369 g         1470 t
ORIGIN      
        1 ggctttgctg ctcaaccagg tttttggcaa tccgcacagc accaacccta cttcaaggct
       61 ctccagccaa ttgattgatg aagcgagaca aaccatcatc aatcatttca aggcttacga
      121 ctatcaactg gtttttaccg ccaatgcttc gcaggcgctc aagatcatcg gagagggcta
      181 tcctttcgaa gaaaacggac atttcctgtt gctgttcgac aaccacaatt ctgtaaacgg
      241 catccgcgaa tactctcgag tgaaaggggc ggcgcatacc tacagtccgg tcaatattga
      301 agacctgcgc atcaacgaac caatgttgac tgagtacctg tcggcttttc ccgacaagca
      361 gaacaagctt tttgctatgc cggctcagtc taacgtttca ggcgtgaagc acgatttgaa
      421 atgggtggaa cttgcccaac agcaaggatg ggatgtattg ttggatgcag ccgcctatgt
      481 gccttccaac accctggacc tgtcggaagt gcagcccgaa ttcgtatcca tgtcgtttta
      541 caaaatattc ggctatccca ctggcctcgg tgctttgttg atcaagaaat cggtgttcaa
      601 caaactgcac aaaaactggt ttgctggcgg cacggtgaag tttgtaagtg tgagcagcga
      661 caattttttc ctcgccgaaa actatgaacg tttcgaagac ggcaccctca actatctcgg
      721 tattccggca cttaccattg gattcaattt catcaaccgc attggcatgg aggtcatcaa
      781 tcgcagggta accttgctga ccgcctggct cttggaacaa ttgctggcgc tgcaacacag
      841 caatggcgag ccgctggtgc atgtatttgg tcccagggac accgctgaca gaggggctac
      901 catcatcttc aacgttttcg ggaaggatgg ccaaccgctt ccttactggg aagtggaggc
      961 ggcagccaat gccaccaaca tttcactgcg taccggttgc ttctgcaatc ccggtatcga
     1021 tgagataaac aattgcctca gcagtgagga gctggcaggg tatttcagca gtcacagcgg
     1081 cggcgacttt gctgacatga tcgttgcgct ggggcggatg cggggagcaa tccgcatttc
     1141 gctggggctg gccagcaatt tttccgacgt gtaccggttc atcatttttc tgaagcgtta
     1201 cctgcaatga tttgagcggg ggaaatgcac gggggcgctt agtctgtttc ttccaatgta
     1261 aatatgtctt ccacttttac gttgaagagt cgggcaattt ttaaggcgag cacagtgctg
     1321 ggtacatact tgttgctttc catggcattg atggtttgcc tgctgacgcc gattttttct
     1381 gccagttcgg cctgcgtcat gctgtgaatg gcccgttgta ctttaatgct gttttgcata
     1441 gtagaagggt ttagtcgttg gcagatcggt ttttatacag caggtaatgg aagcggagca
     1501 agaagatcaa cggcacagta agcatgttgt acaccatgaa ctcgaggaaa tgaatatcgt
     1561 acacgatcca gatagcgatg atgagtataa ggaagttggc cagcactgcc caatgccagg
     1621 attgaagccg gaggctttgg atgaactcat cctcgtggcg ggtacgggca aagctcatga
     1681 gcaacaatcc tgcaattgta ccagaaaggc tcagttcatc ggtgaggttg ctgttgccgt
     1741 gaaaaagttc ggaagctttt ttcggcaggc taagccaggg cagttctaca ttcaagtgca
     1801 aatacagggc gcccaggata gcacagggca ggaaaatcgc caggccaatc caggtgtagc
     1861 gggtgggtag tgaaattgtt ccattcatag tgtaaagttt tgttcaccaa aagtaaaata
     1921 aactttacaa aaagaaaaga atacatgtca aaaatttctt aaagccattg ggagtgttct
     1981 ttccggttag cggcacatgg caaaagatcg ggggccaatt gaaaagggca ttttatcttg
     2041 ccggcatgaa ctggaacgcc atcctcacca tcagtttcac cctgtttgcg gtgatcgaca
     2101 tcattggctc gatccccttg ctcatttcgc tgaaacacaa aatgggcggc atcaatgaag
     2161 ccaaagccac cctgatctcc ggtggtctca tgatcctttt cctgtttgtg ggcgaaaagt
     2221 tcctgaacat cctgggcatc gatgtaaagt catttgccgt aggtggctcc attgtcattt
     2281 tcattttggg attggagatg gtattgggtg tcgagttctt caagagcgat ggcgatccca
     2341 aaaccggtac ggtggtgccc attgcctttc cgttgatagc cggtagtgga acgcttacca
     2401 ccatcatatc gttgcgggcc aactacgatg aaatcccggt attgattggc atcctgctga
     2461 accttgtttt cattttcatg gtattgaaat cgcttgacat catccggaaa ctgctggggg
     2521 atgcgggcat gctggcggtg cgcaaatttt tcggggtggt actgctggcc atcgcggtca
     2581 aaattttcgc caccaatgcc ggggggctca tccagtaaaa ctttgcccca acgctttttt
     2641 aatgcatttt tgccgcccgg taaaagcagg gcctcgtagt acaatggata gtataagagt
     2701 ttccgaagct ccagatccag gttcgattcc tggcgaggcc accaacattc aatagccaac
     2761 cccctcaggg ttggctattt tgtttgcctt tactggctgc tggttcccga ttcaaaattt
     2821 tgtttgcaaa aactgttttc tgcttgcggc aaatgtccga ggccagtgcc tgaacgtttg
     2881 tgttttcgat gaagactgtg tagtgaaggc tttcttacaa accaaatctg tattgcactc
     2941 cacatacaaa ttgtgtcctg gaagaaaaat atccagcctc caaccttagc atccagtgtt
     3001 tattaaattg gtactgcatg ccagtcaaaa aattccaggg atcatcaggc cttctatcca
     3061 gggaatactc aaccgttgag ctggcggctg tgttaatggc attgtctgct gcctctacca
     3121 atttccctgc agttgccaag gccctatttg ctgcattgta acgtgctatg ttcaaaggat
     3181 ttctttgttc gatgggagac aaggatgccc accacgtatc tactttaacc tgcccagctg
     3241 ctactttatt acctgcagca tcaatcctcc ctccccattc atctacatcc agtgcttcat
     3301 tcaatggcaa agaaccttca gaggcggcat ctaaacttac cctgaagccg cccacccaaa
     3361 cagcaataga ctgttctggt tttttgagct taaaattctt tcctaatcgt ggacctataa
     3421 caaaagttct ggtaggcctg ctaagttgtg gcacatcggt ccaggcaatg ttcatgtcaa
     3481 gtattaaaaa ggctccttta attccgatgg ccggcatcac tccaaaacca tatgttgttg
     3541 tttggaactc aaccaatgaa gcgcctgaca agatgggtac attgttcgtt atgtcttcag
     3601 gggcatctac ccggtatttt acttcggtgg aggcctgcgc tcttcccagt atgccataaa
     3661 catttaaaaa aggaaatacc caaacatcgg gccggaatgt aagggctgat gcacgagcct
     3721 ttgccaggtc aaattttacc aggccagaca ggtcgatcat ttcgccgcca ttaaaaccta
     3781 ctttcaggtt ttcaaggatg atatctgagg tttgcgtaaa atattgcaca ctcattcctg
     3841 cggagtaagg caagtcgaac ccggcagcca cagctttctt gccaagaatt ggcagcgcat
     3901 acggatattc tttttttttg gcactgactc ttgccaatga atcgaggggg tcaatttccc
     3961 gattggtgaa aacctggcca attgcattta tacaaaagga aaatccaatg atgaggaata
     4021 agtgatattt aatcatacat gaaaggcttt tcttgttgac tatttcattt atcaaagaga
     4081 gactttaaaa aggaaaatag tattatgatc aaatttatac ttgttgccat actacaatta
     4141 atatatggct ttggcttggt agagttttgg tgctaatatt cctcgaatgt ttaaactaag
     4201 tggaagaaaa gtcgtaaata ccgcccacat ccgtttaatg gctgctacac attttatgtc
     4261 ccaaagcaaa cgccatggct ttattgatta catctctcgt tgtttggatg caatccacta
     4321 atttgtctgg aaaataggtt tgctatgaag tattccctgc ttgctgtgtt tttgctgacc
     4381 gctttccagg tatcgtttgc ccagaattcg cccgccgaga aatatgtgaa agcattttcc
     4441 gaacgcaaaa acaagtggct tatcgaaaag aactacgaca gcctgaaggc catgctcgac
     4501 aatcgctgtc tttacatcca cagcaatgga tggtcgcaaa ccgctgctga cgtgatcaaa
     4561 gatttgcaga ccggcaaaat ggtatacaac aaagtaagca tcaccgaatc gcaggcccgg
     4621 cagtttgaaa gtatggtgat tgttacaggc aagggcaatt tcgagggcag tgtcgatcaa
     4681 aagccattca acatccgcct ggcatatact gaggtataca taaagcgcaa agacaactgg
     4741 aaactggtga gcaggcagtc ggccaaactc gaacaataat ggccctgccc tgataactgt
     4801 caaccttcct tggcggcgtt gcttgtacct ttaaaaagat ggatcagatt gttctgatca
     4861 tcggaaaaac agttgttatg aatttacagt tgcaagacca gcatttcata gtgggaggcg
     4921 ctacctcagg ctttggcaag gcggtagcgg aagcactgct ggcggaggga gccaatgtaa
     4981 tagccattgc caggacggaa gagaaactgc aggaactgca gcaatcgcat ccgtacaaag
     5041 tggaaatatt tgtgggcgat atcaccagtc cgggcgccgt acaggcactg aaaaaacaac
     5101 tgggaaataa gcgggtggat ggcatgctgg tgaatgccgg cggtcctcct gccatgactg
     5161 ccttggaagc cggtttgcag gattgggaca gagcctatga gcaagtgctt cgatggaaaa
     5221 ttgacatggt acaaacattt ctgcccggca tgatagagca taattacggc cgtattgtgt
     5281 tcgtggaaag tgccagcgtg aaacagccga tggaaaattt ggtattaagc aacgccatgc
     5341 gattggcggt ggtagggtat gcaaagacat tgtcgcagga agtggcacac caaggagtga
     5401 cacttaatat aatggcaccg ggttaccacg ccacttcagc catggagcgc cttttcaaaa
     5461 agaaaagcga acaaaccggt atgagtattg atgatgccat gctccaatat gttagccaga
     5521 ccagggtggg attcctggga gcagccgaag atttcgcgtc attggcgttg tggt
//
LOCUS       DATIQF010000534         1501 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_84672, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000534 DATIQF010000000
VERSION     DATIQF010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84672"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..218)
                     /locus_tag="VLL95_08865"
     CDS             complement(<1..218)
                     /locus_tag="VLL95_08865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39012.1"
                     /translation="MSSKYQVHDNEWPHFVTFIVVGWVDVFSRPLYKDLLVESLGYCQ
                     QHKGLLLHAWVIMTNHVHLIVSATGPRIP"
     gene            537..>1501
                     /locus_tag="VLL95_08870"
     CDS             537..>1501
                     /locus_tag="VLL95_08870"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HSR39013.1"
                     /translation="MSQPSTSFSDSKQHYPILDGLRGVAAVMVVIFHIFETFTGGDHT
                     KQIINHGYLAVDFFFLLSGFVIGYAYDDRWHKMTLGGFFKRRLIRLHPMIVMGMLIGA
                     LLFYFQAGPVFADLHSIPFWKLMLVMLVGFTLFPLPLSMDIRGWNEMHPLNGPAWSLL
                     YEYIANIAYALVLRRLPNAILAVLVVLAGAVLIHWGLTGPTGDMVGGWSLEPTQIRIG
                     FTRLSFPFLAGLLLSRVAKPGQLNHAFLWCSLLLIVFFSIPRLGGHEHLWMNGLYDAL
                     VIILVFPVVVYMGASGRVMGDGWVSKLCKFLGDISYPIYITHYAF"
BASE COUNT          311 a          371 c          401 g          418 t
ORIGIN      
        1 ggaatgcggg gtccggtagc ggatacaatc aggtgcacat ggttggtcat aatgacccag
       61 gcatgcaata gcagtccttt gtgctgctgg cagtaaccga ggctttccac tagcaggtct
      121 ttgtatagcg gcctgctgaa aacatctacc cagcctacca cgatgaaggt gacaaagtgt
      181 ggccattcgt tgtcatgtac ctgatacttt gaactcatgg ttttctggta ttgctgcaga
      241 aagctaatga ggcagcaatt aaaatgcaag gggcgatggc agtagagccg gacacagtcc
      301 ggcggaattg gttgtcacaa gtgacccgcc ttgggcggaa cacttgcgcc agaatggtca
      361 tgctcttttt gctaaagata aaaaaggaga tgaatgcctg ccggctgatg tcgacagcgg
      421 gtttcatcaa ctgaatgaac ctgcatggct gccatgcact tgccaattgg agaaaaaacc
      481 gatattacac ggatcaattt tttgaggcat tcatacctaa aacgaacagc cagccgatga
      541 gtcagccatc caccagcttc agcgacagta aacaacatta tcccatactg gatggactcc
      601 ggggtgtggc cgccgtgatg gtggtcatct ttcacatctt cgaaaccttt accggtggcg
      661 atcataccaa acagatcatc aaccatggct acctggcagt tgattttttc tttctcttat
      721 ctggctttgt gatcggctat gcctacgatg atcgctggca taaaatgaca ctgggcggct
      781 tcttcaagcg tcgcctgatc cgtttgcatc ccatgatcgt catgggcatg ctcattggtg
      841 ccctcctgtt ttatttccag gcaggccccg tgtttgccga tttgcacagc atacccttct
      901 ggaaactgat gctggtgatg ctggtgggtt tcacgttgtt tcctttgccc ttgtcgatgg
      961 acattcgcgg ctggaacgaa atgcatccgc tcaatggccc ggcctggtcg ctgttgtatg
     1021 aatacattgc caacatcgct tatgcgttgg tgctgcgtcg gttgcccaat gccattcttg
     1081 ctgttttggt ggtactggct ggtgccgttt tgattcactg gggattgacc ggtcctactg
     1141 gcgatatggt aggcggttgg tcgctggagc ccacacaaat acgcatcggc ttcacccgct
     1201 tgtcgttccc gttcctggcg ggcttgttgc tgtcgcgggt ggccaagccc gggcaactca
     1261 atcacgcctt tttgtggtgc agtcttttgc tcattgtatt tttttccata ccccgcctcg
     1321 ggggccacga gcatctttgg atgaatggat tgtacgatgc gctggtcatc atattggtgt
     1381 ttcctgtagt ggtgtacatg ggcgccagtg gcagggtgat gggcgatggc tgggtgtcga
     1441 agctttgcaa attcctcggc gatatttctt atcccatcta catcacgcac tatgcgttca
     1501 t
//
LOCUS       DATIQF010000535         1808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_251842,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000535 DATIQF010000000
VERSION     DATIQF010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251842"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..321)
                     /locus_tag="VLL95_08875"
     CDS             complement(<1..321)
                     /locus_tag="VLL95_08875"
                     /inference="COORDINATES: protein motif:HMM:NF015818.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructosamine kinase family protein"
                     /protein_id="HSR39014.1"
                     /translation="MISIQEHIEKKLGIVIQRMIPVHGGDISQAWRIETDEEKYFLKV
                     NDAGKLPGLFARETRGLQALRLGTTISVPEALAWDVVDNRQYLVLQWIEKGHPQPDFW
                     EAFGT"
     gene            complement(377..>1808)
                     /locus_tag="VLL95_08880"
     CDS             complement(377..>1808)
                     /locus_tag="VLL95_08880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39015.1"
                     /translation="STDDGQVQLTRDGGKTWTNLTANISGLPKNCWIPQIRSSRYNAG
                     EAFVVANNYRMGDFGTYIFRTTDYGKTWVNMMAGKNNVKGYALSVLQDPVQPNLVFAG
                     TENGLWVSLDNGNSFQQFKNNYPSVSTYDLAIQEREADLAIATFGRALYVVDDIRPLR
                     VLAANKGAIAEKRLQVMESPTATQAFESGPPGIEYSTYGLYAAENRSSDASINFFLKN
                     DKAKPSKGNDSVTVKIYNAANEAIRTFKAKADTGFNRVYWNYGTKGIRQPGSPKPRKG
                     APEPGGGMQAAPGTYKAVVSLGDAADSTTINVQYDPRAKFDQGVYDAQKKMLDKLWKT
                     SARLTAATDRLTEMEEVTRKIDAQLRDVEGKPADSLRKAGKAMQDSIKAIREMISGKR
                     QEKQGYGTPYQLTVTGKLREAQFMIMGKRSMPGENEENALRIADDMVSKAIARVNAFS
                     TGAWKNYRQLAESTPMKLFSDTEELR"
BASE COUNT          360 a          479 c          463 g          506 t
ORIGIN      
        1 ggtgccaaaa gcttcccaga aatccggttg cggatgtcct ttctcaatcc attgcaacac
       61 gaggtactgg cgattgtcta ccacatccca cgccaatgct tcgggcacac tgatggtagt
      121 acccagacgc agcgcctgca gccctctcgt ttccctggca aagagacccg gcagtttgcc
      181 ggcgtcattc actttcagga aatatttttc ttcatccgtt tcaatgcgcc atgcctggct
      241 gatatcgcca ccgtgcacgg gtatcattct ttggatgaca atacccagtt ttttttcaat
      301 atgttcctgg atggagatca taaaaaaatg ccactttaaa ggtggcactt ttttgacggt
      361 cagaatacga tttacatcat ctcaattctt ctgtgtcgct gaacaatttc attggcgtgg
      421 attctgccag ctggcggtag tttttccagg caccggtgct gaaggcattc accctggcga
      481 ttgctttgct taccatatca tcggcaatac ggagggcgtt ttcttcattc tcacccggca
      541 tgctgcgttt gcccatgatc atgaattgcg cttcacgcaa cttgccggta acggtgagct
      601 ggtaaggcgt tccgtaccct tgcttttcct gccgcttgcc actgatcatt tcacgaatgg
      661 ccttgatgga atcctgcatg gctttgcctg ctttgcgcaa actgtcggca ggcttgcctt
      721 ccacatctct cagttgtgca tctatttttc tcgtcacctc ctccatttcg gtcaggcggt
      781 cggtggcagc cgtaaggcgt gcactggtct tccacagttt atcgagcatt ttcttttggg
      841 catcgtaaac gccctggtca aattttgccc gggggtcata ctgaacatta atggtagtgc
      901 tgtcagccgc atcgccaagg gataccactg ctttgtaggt gccgggtgcc gcctgcatgc
      961 cgccaccagg ttcgggtgcg cctttgcggg gcttggggct tccgggttga cgaatgcctt
     1021 tggtaccgta gttccaatac acccggttga acccggtatc ggcttttgcc ttaaaagtgc
     1081 gaatggcctc gttggcagca ttgtagatct tcactgtcac cgaatcgttg cccttggaag
     1141 gtttggcttt gtcatttttc aggaagaaat tgatggaagc gtcgctgctc ctgttctcgg
     1201 cggcatacag gccataggtg ctgtactcaa tgccgggagg accgctttca aaggcttggg
     1261 tggcagtcgg gctttccatt acctgcaaac gcttttcagc aatggcgcct ttgttggcgg
     1321 ccaatacacg cagcggccgg atgtcatcca caacgtataa agcacgacca aaagtggcaa
     1381 tggccaggtc ggcttcccgc tcctggatgg caaggtcgta agtgctcact gaaggatagt
     1441 tgtttttgaa ttgctggaag ctgttgccat tatcgaggct cacccacaaa ccattttcag
     1501 tgcctgcaaa aaccaggttg ggttgcacag gatcctgcag cacactaagg gcataccctt
     1561 tcacattgtt ctttccggcc atcatgttca cccaggtttt gccgtagtcg gtggtacgga
     1621 aaatgtaggt gccaaaatcg cccatgcggt aattgttggc caccacaaat gcttcgccgg
     1681 cattgtagcg gctgctgcgt atttgcggta tccagcagtt tttgggaaga cccgaaatgt
     1741 tggcagtaag attggtccat gttttgccgc catcacgggt aagttgcacc tggccgtcat
     1801 cggtgctc
//
LOCUS       DATIQF010000536         6551 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_175828,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000536 DATIQF010000000
VERSION     DATIQF010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6551
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175828"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2027
                     /locus_tag="VLL95_08885"
     CDS             <1..2027
                     /locus_tag="VLL95_08885"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSR39016.1"
                     /translation="YAAKTIAVSQLQPGQDNTILLNPAPSSLKEVVVSGRWSSGPLQT
                     ISKLDIHLNPILNSQEVLRIVPGLFIGQHAGGGKAEQIFLRGFDIDHGTDIRLTADGL
                     PVNMVSHAHGQGYADLHFIIPEMIENVNFGKGPYNTDKGNFATAGYVDYKTRNFLDNN
                     FAKVEIGQFNTGRVVAGINLLPKNVRQQKNQSLIFSGEAMTTDGFFESSQDFTRFNGM
                     LKYHGQVSPKLFVTAFASGFSSEWLASGQIPVRAVEDGTIGWFGAIDDTEGGKTSRYN
                     ASVALQTYLPNGMQWKNQVYYSRYLFDLYSNFTFFLVDPVNGDQIRQKEARNIWGYNS
                     TFDKNHYLGSKRAWLQAGAQIRYDKVNVIELSRTKNRTEVLERLSLGDINELNAALFV
                     EEKVNLSSALDITVGLRGDYFQNNYANRLDNTNLSSNSFMASPKLNIDFRPNKNLKIY
                     WHNGQGFHTNDTRVAVQKNGRDVVTPAWGSDLGAMAKLGEKLVVQSALWYLFMQQEFV
                     YVGDAGVVEPGGRTRRWGWDASVRYEMAPYLFADLNVNYAMGRAIDEPKDANRIPLAP
                     IFTSTGGITYRKAQGFNGSLRYRYLGDRPANEDNSIVAVGHFIWDAQLNFTRKKWEAG
                     LSVQNIFNTKWKETQFETESRLQNEPDPVSEIHFTPGSPFFARMSFTIFF"
     gene            complement(2209..3126)
                     /locus_tag="VLL95_08890"
     CDS             complement(2209..3126)
                     /locus_tag="VLL95_08890"
                     /inference="COORDINATES: protein motif:HMM:NF013246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005254 - chloride channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bestrophin family ion channel"
                     /protein_id="HSR39017.1"
                     /translation="MLLKKKLRLHRIFLITWKTDIVMLVLTVMAYFVDIYLFPDIFVP
                     PTVATLMGTALAFFIGFNNNQAYSRWWEARIVWGGLINESRNLSRDLVAYLNPGIRDN
                     RGKSATEIAHEIVYRHLGFVMLFKDSLRKIKGGDYSKYLTQEELDKIGTVSNGYNAIM
                     NMQARPLGDLYHQGLIDGFQFRTLSTTITNINNDMGRAERINNTVFPPTYIYFTELFV
                     YLLVILITLSSVQAIGPWSIFFGWVIGFVYHTTHINGLSILNPFDMQPTSIPLDSISR
                     TIEINVLETIGAKDIPPPLAALENGEYIL"
     gene            3457..4635
                     /locus_tag="VLL95_08895"
     CDS             3457..4635
                     /locus_tag="VLL95_08895"
                     /inference="COORDINATES: protein motif:HMM:NF019042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HSR39018.1"
                     /translation="MKKQVLLLFSLSLLQFVSFGQIIEQIDTSYKQQIKVLPLPKEGL
                     LKNIYFISNMRFAFQNDFTEGTHTGSKFRMQEWRPEILGEVFPGVSFRFRTSLFPNAN
                     SSTTDNLKRDIDFLFVSVKLSSKVNLTLGKMAAEWGGYEFDHNPINMFQFNDIVNFSD
                     PFLAGVKMDYKANDKHTFSMQVVNANTRNFNEMYGSMPGVSAAKFPGAVLAKWRGNFM
                     NGKFQTLYSYNLYTQAEGKVVNMFTLGNQLKLRKWKIQYDFKFSDEELDRTGVVSGII
                     PDDVTPYSALDARYVEHWMFLERTISPRLKINTALMVSDAYWNGNPDPRKDNHLRTAW
                     SVVPSIEYNPNPDLNLRFFCSYIGRFFRYSDYAKSALRAQDINTSRIQIGFISPLRVF
                     "
     gene            complement(4929..5630)
                     /locus_tag="VLL95_08900"
     CDS             complement(4929..5630)
                     /locus_tag="VLL95_08900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39019.1"
                     /translation="MQTELQILLLTAISIAFLHTATGPDHYVPFIALSKSRGWSLGRT
                     IFWTVVCGAGHVWSSVLLGLGGAALGWSLSKVGWLENVRGGIAGWVILLFGLTYGIWG
                     LFRAYRNNPHKHFDLDDNNDIYVYEHKHGAAVAPQDRHKVTPWVMFIIFLLGPCEPMI
                     PLLYFPAAKNSFEGMLILIVVYTAFTLLTMIVLVTLGFYGLSFLKTEKLERYMHALGG
                     LTIFICGVGMVFLDW"
     gene            complement(5620..6426)
                     /locus_tag="VLL95_08905"
     CDS             complement(5620..6426)
                     /locus_tag="VLL95_08905"
                     /inference="COORDINATES: protein motif:HMM:NF013899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreD"
                     /protein_id="HSR39020.1"
                     /translation="MISDLHIITSLRGAVTYLKKLYFTAPFKVADITINKRQRQLHLT
                     LMSSSPGILDTDEYRLKIELESGCAVRLYTQAYQRLFTMKSSAKQHVDFHLGKDSSLY
                     FIPHPVVPHANSNYAARNRIYLSDNCCLIFGEILTCGRKMNGELFKFSRFHNLTEIFL
                     NNKLVIRENLLIEPSQIDVGAIGQLEGFTHQASMIYLHPDADPASLCAKIHELLAHET
                     GIEYGVSAAPVTGVIVRIMGNGAEQLMDCLHLIAKNLNQLAVLNPSEHAN"
BASE COUNT         1797 a         1593 c         1548 g         1613 t
ORIGIN      
        1 gttatgcagc caagaccata gctgtatcgc aactgcagcc cgggcaggac aacaccatcc
       61 tgctcaaccc cgcccccagc agcctcaaag aggtggtggt aagcggccgg tggtcaagcg
      121 gccccctgca aaccatcagc aaactcgaca ttcacctcaa tcctatcctg aactcccagg
      181 aagtactccg cattgtaccc ggcctcttta ttggccagca tgccggtggc ggcaaagcag
      241 aacagatctt tttaagaggt tttgatattg atcatggaac agatatccgg cttacagccg
      301 atggcttacc ggtgaacatg gtgagtcatg cgcacggcca gggctatgcc gacttgcatt
      361 tcatcattcc agagatgatt gaaaatgtaa attttggaaa aggcccttac aacacagata
      421 aagggaactt tgcaaccgca ggttatgtag attacaaaac caggaatttc cttgacaaca
      481 attttgccaa agtggagatt ggccagttca atacgggccg tgtggtagca ggcatcaatt
      541 tattgccgaa gaatgtaagg cagcaaaaga atcaaagcct catattctct ggggaagcca
      601 tgaccacaga tggttttttt gaaagcagcc aggatttcac caggttcaac ggcatgctga
      661 aataccatgg gcaggtttca cccaagttgt ttgttaccgc tttcgcgtct ggcttttcaa
      721 gtgaatggct ggccagcggc cagattccgg tgagggctgt ggaggatggc accatcggtt
      781 ggtttggtgc tatcgatgat acagaaggtg gtaaaaccag ccgatacaat gccagtgtgg
      841 ccttgcaaac ctatttgccc aacggcatgc aatggaaaaa ccaggtgtac tacagccgct
      901 acctattcga cctgtattcc aatttcacat ttttcctggt ggaccccgtt aatggcgacc
      961 agatacgaca gaaagaggcc cgcaatatct ggggctacaa cagcaccttc gacaaaaacc
     1021 actacctggg ctccaaacga gcctggctac aggcaggtgc ccaaatacgc tacgacaagg
     1081 tgaatgttat cgagttgagc cgcaccaaaa acagaacaga ggtgcttgaa aggctgagcc
     1141 ttggcgacat caatgaactg aatgcagcgt tgtttgtaga ggaaaaggta aacctctcca
     1201 gtgcgctgga tattaccgtt ggcctgagag gtgattactt ccagaacaat tatgccaacc
     1261 ggctggacaa tacaaacctg tcgagcaact catttatggc cagccctaaa ctcaacattg
     1321 atttcaggcc gaacaaaaac ctcaagattt actggcacaa tggacagggc tttcacacca
     1381 acgacacccg tgtggccgtg caaaagaacg gaagggatgt tgtgacacct gcctggggca
     1441 gcgatttggg ggcaatggca aaacttggcg aaaaactggt ggtgcagtca gcgctctggt
     1501 acctttttat gcagcaggaa tttgtatacg tgggcgatgc cggggtggta gaacccggag
     1561 gacgtacccg caggtggggc tgggacgcat cggtgcgata cgagatggcc ccttatttgt
     1621 ttgccgacct gaatgttaac tatgccatgg gacgcgccat tgatgaaccc aaagacgcca
     1681 acaggatccc gctggcgccc atcttcacca gcacaggagg cattacgtac cgcaaggcgc
     1741 aaggctttaa tggcagccta aggtatcgct acctgggcga cagacctgcc aatgaagata
     1801 atagcatagt ggcggtgggg catttcatct gggatgccca attgaatttc acccgtaaaa
     1861 aatgggaagc agggttgtcc gtccaaaaca tcttcaacac caaatggaaa gagacacagt
     1921 tcgaaacaga aagccgcctg caaaatgaac ctgaccctgt ttcagaaata cactttacgc
     1981 cagggagtcc cttttttgca aggatgagtt ttaccatctt cttctaaacc ccagagggct
     2041 gaggcggtaa cgctgccttt tgcaaaccat aaggcgagtg tgccacaaat ggcacagtac
     2101 aaccatggtc cgcgccaaat ccttcttcag caatattcgc cccaacgctt ctctatcgga
     2161 tttaggacca aggacctcac aggcgcccta cccggcccgt gcctgaaatc aaaggatata
     2221 ctccccattt tccaaagcgg caagtggtgg tggaatgtct ttggccccaa tcgtttcgag
     2281 cacgtttatt tcaatcgtcc gtgaaatgga atcaaggggt atggaagtgg gttgcatatc
     2341 aaaaggattg agaatactca gcccgttgat gtgtgtagtg tggtaaacga aaccaataac
     2401 ccatccgaag aatatggacc atggtccgat ggcctgcacg ctggacaggg tgatgagaat
     2461 aaccaacagg taaacgaaca attcagtgaa gtaaatatag gtaggtggaa acacggtgtt
     2521 gttgatccgc tctgccctgc ccatatcgtt attgatattg gtgatggtgg tgctcagtgt
     2581 cctgaattga aacccgtcaa tcagtccttg atggtaaagg tcccccaatg gtcgggcctg
     2641 catattcatg atggcattgt aaccattgga cacagtgcca attttgtcca gttcttcctg
     2701 cgtcaaatac tttgaataat caccgccctt tattttccgc aatgaatctt tgaaaagcat
     2761 tacaaagcca aggtgccgat atacaatttc atgggctatt tctgtagctg atttaccccg
     2821 gttgtccctg ataccaggat ttaagtaggc taccaaatcc ctggaaaggt tcctcgattc
     2881 attgatgaga cctccccaaa caattcgtgc ttcccaccaa cggctgtagg cctggttgtt
     2941 attgaagccg atgaaaaagg ccagagcggt acccatcaat gtggctactg taggcggaac
     3001 aaaaatgtcc gggaacaaat aaatatccac gaaataggcc attactgtga gcacaagcat
     3061 cacgatatcg gttttccagg taatcaggaa aatcctgtgc aggcggagtt ttttcttaag
     3121 taacatcggt aggctatttt agtctcataa tgagcagtat gaattctctt tcgcgtttaa
     3181 aaataaaaca atccgccttt atacagtgaa cggatggcat gtttgcccct ttgtctactc
     3241 aacaagtcta ccgagcaagg cgccccattt caagaaggct tcatcccctg ccaaaacaat
     3301 cagcacagca agagccttgc ggcataaaaa gttgtgcttc ccgggaagca ttccagaata
     3361 tatttgctaa tttcaaaaat cggatggact gcatacaatc caaggacacc aaatgccggg
     3421 ctaattccct tttcaactat gaaaaccccc accactatga aaaaacaagt cttgttactt
     3481 ttcagcctta gtcttttgca atttgtttcg tttggccaaa tcattgagca gattgacacc
     3541 tcctataaac agcagattaa agtactgcca ttgcccaagg agggactgct caagaatatt
     3601 tacttcatct ccaacatgcg cttcgcattt cagaatgatt ttaccgaagg cacccatacg
     3661 ggcagcaagt tcagaatgca ggaatggcgt cctgaaatcc ttggcgaggt gtttcctggt
     3721 gtgtccttcc gtttcaggac cagccttttt cccaacgcga atagttctac caccgataac
     3781 ctaaaaaggg acatagattt cctgtttgtg agtgtgaaac tctcttccaa agtcaatctc
     3841 accctgggta agatggctgc cgaatgggga ggctacgaat ttgatcacaa cccgatcaat
     3901 atgttccagt tcaacgacat cgtcaatttt tctgatcctt tcctggcagg tgtaaaaatg
     3961 gactataagg caaacgacaa gcacactttt tccatgcagg tggtgaatgc caatacccgg
     4021 aatttcaatg aaatgtatgg atcaatgcct ggcgtcagcg ctgccaaatt cccgggcgcc
     4081 gtactggcca aatggagagg caattttatg aatggaaaat tccagacctt gtacagttat
     4141 aatttgtaca cccaggccga aggaaaagtg gtgaatatgt ttaccctggg caaccagtta
     4201 aaactgagga aatggaagat ccagtatgat ttcaaattca gcgatgaaga actggacaga
     4261 accggcgtag tatcaggcat catcccggat gatgtaaccc cgtatagtgc cctcgatgcc
     4321 cggtacgttg aacactggat gttcctggag cggacgatca gtccccgcct gaagatcaac
     4381 actgcgctga tggtgagcga tgcctattgg aatggaaatc ctgaccccag gaaggacaat
     4441 cacctgcgga ctgcctggag cgttgttcca tccatcgaat acaacccgaa tccggatctg
     4501 aaccttcgct tcttctgtag ctatatcggc aggttcttcc gctattccga ttatgccaaa
     4561 tctgctttaa gggcgcagga tatcaacacc tcaagaattc aaattggctt tatttctccc
     4621 ctgagggtat tttaagaact taagttgaca tcagtttcca tttctccggg aatgaggtca
     4681 aagttcaaag tgccaatcaa gtgtttctgt cgattcacct gattggcact tttttttgct
     4741 taggacacat ttcgcagacg ttttctaccg gccaaatggg cccctgcttt tgtaattcaa
     4801 actgattgca gggatggtgc tgcgaaaatg aataatgggc gattttcagt gctctgaaat
     4861 tctgaccggc tgcgctgctt cttggctcta aaagttgaaa gtatgcttgc gccaggaaaa
     4921 ttccatggct accaatcaag gaataccatg ccgacaccac aaatgaaaat ggtgaggccc
     4981 ccaagggcat gcatgtagcg ctccagtttt tcggttttca gaaaactcag cccatagaat
     5041 ccaagcgtca ccagcacgat catggtcagc agggtgaatg ccgtatagac gacaatgagg
     5101 atcagcatgc cttcaaaact gtttttagcc gctggaaaat aaagcaaagg gatcatcggt
     5161 tcgcagggac ccagcaggaa aatgatgaac atgacccacg gggtaacttt atggcggtcc
     5221 tgtggcgcta cggccgcgcc atgcttgtgt tcataaacat agatatcgtt gttgtcgtca
     5281 aggtcgaaat gcttgtgcgg gttattcctg tacgccctga ataatcccca aattccgtat
     5341 gtcagtccaa acaacaaaat cacccaaccg gcaatgccgc cccgcacatt ctccaaccaa
     5401 cctaccttgg acaatgacca tccgagtgcc gctccaccca atccgagcag taccgaactc
     5461 caaacgtgcc cggccccgca aacaacggtc cagaaaatag tgcggcccag gctccatcct
     5521 cttgatttgg acaaggcaat aaatggcaca taatggtcag gccctgttgc cgtatgcaaa
     5581 aaggcaatgg aaatggcggt aagcagcaat atctgcaatt cagtttgcat gttcacttgg
     5641 atttagtacg gccaattgat tcaggttctt ggcaatcaaa tgcaggcagt ccatgagttg
     5701 ttccgcaccg ttgcccatga tccttacaat tacacctgtg acaggggctg cagaaacacc
     5761 atactcaatg ccggtttcat gcgccaacaa ttcatggatt ttagcacaca aactggcagg
     5821 gtcggcgtcg ggatgcaaat aaatcatact ggcctggtgg gtaaatcctt ccaattgacc
     5881 tatagcaccc acgtcaattt gggaaggctc aatcagcaga ttctcacgaa tcacgagttt
     5941 gttgttcagg aaaatttcag tgaggttatg aaagcgggaa aacttgaaca actcgccatt
     6001 catttttctt ccacaggtca atatttcgcc gaagatgagg cagcagttat cagataaata
     6061 aatccggttc ctggctgcat agtttgaatt ggcatgcggc accacaggat gtggaatgaa
     6121 gtagagactg ctgtctttcc ccaggtgaaa atctacgtgt tgcttggcgc tgcttttcat
     6181 ggtaaaaagg cgctggtatg cctgggtata cagccgcact gcacatccgc tttccagttc
     6241 gatcttcaga cggtattcgt cggtatccag gatgcctgga gaggaactca tcaaagtcag
     6301 gtgaagttgc ctttgacgtt tgttgatcgt tatatcggcc accttaaaag gcgcggtgaa
     6361 atacaatttc ttcagatagg ttacggcacc cctgagcgat gtgattatat gcaggtcgct
     6421 gatcatctcc agagttttgg ttcttcaatt tcctccagca gggcatattt cttgatccag
     6481 ccaatgacag aatccagtcc ctgcagggtc ataaggtttg taaatacaaa gggactgcct
     6541 tttcgcatcc t
//
LOCUS       DATIQF010000537         2611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_297660,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000537 DATIQF010000000
VERSION     DATIQF010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297660"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            111..491
                     /locus_tag="VLL95_08910"
     CDS             111..491
                     /locus_tag="VLL95_08910"
                     /inference="COORDINATES: protein motif:HMM:TIGR00004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HSR39021.1"
                     /translation="MSKQIIQTDAAPAPIGPYNQAVMAGDLLFISGQIAINPMDGSMN
                     NASIEDETHQVMNNLKAILHQAGLGFEHIVKTTIFLSDMSLFSAVNEIYGKYFKGDFP
                     ARETVAVKGLPKNVNVEISMIAHR"
     gene            589..>2611
                     /locus_tag="VLL95_08915"
     CDS             589..>2611
                     /locus_tag="VLL95_08915"
                     /inference="COORDINATES: protein motif:HMM:NF015279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HSR39022.1"
                     /translation="MPDIQHKIRIVTAASLFDGHDAAINIMRRILQSKGAEIIHLGHN
                     RSVHEIVEAAIEEDANAIAITSYQGGHVEFFKYMKDLLDQSECGHIKIFGGGGGTILP
                     EEINELHAYGITRIYSPDDGREMGLEGMIEDLLEKSKAPWPRPTEKGHQDFWTAAANW
                     NGKLPLGEAKDVRRIARAITEAELGLNEKKVAGSYQGAVLGITGVGGAGKSSVTDEIV
                     RRFLALNDTNTIAVISVDPSKKKTGGALLGDRIRMNSISHPRAYMRSLATREDNTALS
                     GHVQEAIDICKQEGFDFIILESAGTGQSDASILDFCDVSLYVMTPEYGAASQLEKINM
                     LDYADLIAINKFDKAGALDALADVRKQYKRNHGLWTAKDEELPVMGTMASKFNDDGMN
                     HLFDKLMQVMQTKLGVQYGVSHFSETAKVSQSVIPPSRKRYLSEIADNNRQYDKWVTE
                     QAAIASKLYQVDGVMQDASMKDNAGLQQMKQQYEEQLSRECSKLLAEWPGLVKKYNND
                     FFEYQVRDKVIQQPLTTTSLSGTKIKKVVLPKYKDWGDILQWQLKENVPGEFPYTSGV
                     FELKRQGEDPTRMFAGEGCPERTNKRFHYVSHDQPAKRLSTAFDSVTLYGEDPSHRPD
                     IYGKIGNSGVSIATVDDAKKLYSGFDLCDPRTSVSMTINGPAPMLLAFFM"
BASE COUNT          725 a          637 c          667 g          582 t
ORIGIN      
        1 agctattttc atgtcattaa tggcattgac atcgctgcca aaggcaggtg ctgcaaaatt
       61 gccgtattgc cgctaatctg ttacattcgt ttttattgaa aagtgagtat atgagcaagc
      121 aaatcattca aactgatgca gcgccagcac ctattggccc ttataaccag gcggtaatgg
      181 ctggtgacct gttgtttatc agtggtcaaa tagccatcaa tcccatggat ggcagcatga
      241 ataatgcctc cattgaagac gaaacccacc aggtgatgaa caacctgaag gcgattcttc
      301 accaggctgg tcttggtttt gagcacatag tgaaaacaac cattttcctg agcgatatgt
      361 cgcttttcag tgccgttaat gaaatctatg gcaagtattt caagggcgat tttccagccc
      421 gtgaaacagt ggcagtgaag gggctgccta aaaacgtgaa cgtagagatc agtatgattg
      481 cccaccggta agcatacctg caattgttaa aggcatccgg ccatgcgtat tcctttgggt
      541 acagcatgcc ggatgcttta tttttgcggc cctaataagt tgcctgccat gcctgatatc
      601 caacataaga tcagaatagt aactgctgcc agccttttcg acgggcatga tgcagccatc
      661 aacatcatgc gccgcatttt gcagtccaaa ggcgctgaaa tcatccacct cggtcacaac
      721 cgaagtgtac acgaaatagt ggaagctgct attgaggaag atgccaatgc cattgccatc
      781 accagctacc agggtgggca tgtcgagttt ttcaaataca tgaaggattt gctggatcag
      841 agtgagtgcg gccatatcaa aatttttggt ggaggcggcg gcaccattct gcctgaggaa
      901 ataaatgagc tgcatgctta tggcatcacc cgcatttaca gccccgatga tggaagggaa
      961 atgggccttg aaggaatgat cgaagacctg ttggaaaagt cgaaagcccc ctggccccga
     1021 ccaacagaaa aaggtcacca ggacttttgg acggcagcag ccaattggaa tggaaaactt
     1081 cctttgggag aggcaaaaga tgtgcgaagg attgcaaggg ccatcacaga agcagaattg
     1141 ggtttgaatg aaaagaaagt ggctggcagc taccaaggtg ctgtcctcgg catcaccggc
     1201 gtaggtggtg caggcaaatc atcagtgacc gatgaaattg tgcgccggtt cctggcattg
     1261 aatgatacca ataccattgc tgtcatttcc gtagatccat cgaagaaaaa gacaggaggc
     1321 gctttgctgg gcgaccgcat tcgcatgaac agcatttcgc atccccgtgc ctacatgcgc
     1381 agccttgcca cccgcgaaga caacacggca ctcagcggcc atgtgcagga ggccatagac
     1441 atctgcaaac aggaaggctt tgatttcatc atcctggaga gtgccggtac cggccagagc
     1501 gatgcatcca tcctggattt ctgcgatgta agcctttatg tgatgacacc tgaatatggc
     1561 gccgcctcgc agctcgagaa aataaacatg ctcgattatg ccgatctcat cgccatcaac
     1621 aaatttgaca aagcaggtgc gctggatgca ttggccgatg tacgcaagca gtacaaacgc
     1681 aaccatggcc tgtggacggc caaagatgaa gaactgccgg taatgggtac tatggccagc
     1741 aagttcaatg acgacggcat gaatcacctg ttcgacaaac tgatgcaggt gatgcaaacc
     1801 aaactgggcg ttcagtatgg cgtgtcacac ttcagtgaaa ccgcaaaggt ttcgcaatcc
     1861 gtcattcctc cgtcgaggaa gcgctatctc agcgagattg ctgacaacaa ccgtcaatac
     1921 gataaatggg taacagagca ggctgccatt gcttccaaac tctaccaggt agatggcgtg
     1981 atgcaggatg catcgatgaa agacaatgcc ggcctgcagc aaatgaaaca gcagtacgag
     2041 gagcaactga gccgcgaatg cagcaagctg cttgccgaat ggcccgggtt ggtaaagaaa
     2101 tacaacaacg acttttttga ataccaggtt cgggacaaag tcattcaaca acccctgacc
     2161 actacatcgc tgagcgggac caaaatcaag aaagtggtgt tgcccaaata caaagactgg
     2221 ggcgacattc ttcaatggca actgaaggaa aatgtgccgg gagaatttcc ttatacctcc
     2281 ggtgtgtttg aattgaagcg gcagggcgaa gatcctaccc gcatgtttgc aggcgaaggt
     2341 tgcccggaac gcaccaacaa acggtttcac tacgtgagcc acgaccaacc tgcaaagcgc
     2401 ctcagtaccg cgtttgacag tgttacactt tatggtgaag atccgtcgca ccgccccgat
     2461 atctatggca agattggcaa cagcggcgtg agcattgcca ctgttgacga tgccaagaaa
     2521 ttgtacagcg gtttcgacct ctgcgatcca cgcacttccg tgagcatgac catcaatgga
     2581 ccggccccca tgctgctggc atttttcatg a
//
LOCUS       DATIQF010000538         2178 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_297666,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000538 DATIQF010000000
VERSION     DATIQF010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2178
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297666"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..901)
                     /locus_tag="VLL95_08920"
     CDS             complement(<1..901)
                     /locus_tag="VLL95_08920"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSR39023.1"
                     /translation="MRKGITMALVALSGWSLQAQNTDTLTAKESYVKDVTIIGQHSRA
                     DVHQMPEIVGTAIMAGKKNSLIVMDNVNGNIVTNTMRQVMAKVPGVHVWESDGSGIQI
                     GVAARGLSPNRSWEFNTRQNGYDIAADPFGYPEAYYTPQLQAVQRIQVVRGAGSMQYG
                     PQFGGMLNFVLRDGSDINKPFQFETQNTVGTYGLVNSYNAIGGETEKVHYYGFYDHRS
                     ADGWRQNSRYRVGTGFATVTYKLNKKWKIAAEYTNWHANSQQPGGLTDAKFAQNDKQS
                     FRARNWFDLKWNIAAIKSTYEFNE"
     gene            1116..>2178
                     /locus_tag="VLL95_08925"
     CDS             1116..>2178
                     /locus_tag="VLL95_08925"
                     /inference="COORDINATES: protein motif:HMM:NF037626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39024.1"
                     /translation="MNLDALKETYRNDPRIFQIADRLAFSQPQQISAHGLHGSSQAMT
                     MAAVFEHPAAAGLNHLVIMEDAEDAAYFHNSLENITNALDLFYFPSSFKNRKNFRLLN
                     SSHVMLRTEALTKIAAGGNKKILVTYPEAIFEKVVVSKTLSGNIISIRQAEELNVEGI
                     LELLVMLGFTRTDFVYEPGQFAIRGGILDIYSFGNEKPYRIELFGNEVDSIRIFDPET
                     QLSERKLLSVNIIPNIETQFEQEEKTSLLEFLPENTVVWMNDWAFIREKMEQEKESLQ
                     IFLEYLKDNPGAAIDSGDEEDKPLVKENVGEADFVALEGFETLLAGRHQVAFGGQFAQ
                     APSQNWEGTVVPFNTKPQPS"
BASE COUNT          513 a          556 c          584 g          525 t
ORIGIN      
        1 gttcattgaa ttcgtaagtg cttttgatgg cggcaatatt ccatttcagg tcgaaccagt
       61 ttcgggctct gaaactctgc ttatcgtttt gtgcaaactt cgcatcggtg aggccgccgg
      121 gctgctggct gttggcgtgc cagttggtgt attcggctgc aatcttccat ttcttgttca
      181 gcttgtaagt aacggtagca aagcctgtgc ccacccggta tcggctgttt tgccgccagc
      241 catcggcgct gcggtgatca tagaatccgt agtaatgtac tttttcagtt tcgccgccta
      301 tggcgttgta gctgttgacg aggccatagg tgccaacggt gttttgggtc tcaaactgga
      361 atggcttgtt gatgtcgctg ccatcacgca atacaaaatt gagcatgccg ccaaactgcg
      421 gcccgtattg catggagccg gcgccgcgta ccacctgtat gcgctgcacg gcctgcagct
      481 gcggcgtgta gtaagcttcg gggtagccga aaggatcggc cgcaatgtcg tagccgttct
      541 ggcgggtatt gaactcccag ctgcggttgg ggctgaggcc gcgggccgcc acgccaattt
      601 ggatgccgct gccatcgctt tcccacacgt gtacaccggg tactttggcc atcacctggc
      661 gcatggtgtt ggtcacaatg tttccgttta cattatccat tacaatcagg ctgttcttct
      721 tgccagccat gatggcggtg cctactattt cgggcatttg atgaacatcg gcccggctgt
      781 gctggccaat gatggtcaca tcttttacat aactctcttt ggcagtcagg gtgtcggtgt
      841 tttgtgcctg caaactccat ccgctcaggg ccaccagggc catcgtgatt ccttttctca
      901 ttgctaattg atccttgctt tttgcggggg caaaactgtt atgagcaggc catgcggcag
      961 ttacggaaac ggaaaaccgg attacggaat caggaaaacg acctgtttgt aggaaaaatg
     1021 gcgattgaaa attgtacatc ctgacagaat gatgacagaa agctgcgggc ccgtcccctg
     1081 caaccatgcg gcattcacta catttgccac cccttatgaa tcttgatgcg ctgaaagaaa
     1141 cgtatcgcaa cgacccccgc atttttcaaa tcgcggacag gcttgctttt tcccaacccc
     1201 aacagatcag cgcccacggc ctccacggca gcagccaggc catgacgatg gctgccgtgt
     1261 ttgaacaccc ggccgctgcg ggtctcaacc acctcgtgat catggaagat gcggaagacg
     1321 ccgcttactt ccacaacagc ctcgagaaca ttacaaatgc gctggacctg ttttactttc
     1381 ccagttcgtt caagaacagg aagaatttcc ggttgctcaa cagcagtcac gtaatgctac
     1441 gcaccgaggc gctgacaaaa attgcggccg gtggcaataa gaaaatactg gtgacttacc
     1501 ccgaagccat ttttgaaaaa gtggtggtga gcaaaacgct gtcgggcaat atcatcagca
     1561 tcaggcaagc cgaagaactg aatgtggaag gcatactgga actgctggtg atgctgggct
     1621 ttacgcgaac cgattttgta tacgagccgg gccagtttgc catccgcggt ggcattctcg
     1681 acatttattc attcggcaat gagaagccat accgaattga actctttggc aacgaagtag
     1741 acagcatccg catcttcgat ccggaaacgc agctgagcga acgcaaactg ttgtcggtaa
     1801 acatcatccc caatatcgaa acgcaatttg agcaggaaga gaaaacatcg ctgcttgaat
     1861 ttttgcccga gaacacagtg gtgtggatga acgactgggc tttcatccgc gaaaagatgg
     1921 agcaggaaaa ggaaagcctg cagatctttc ttgaatacct gaaagacaat cccggcgcgg
     1981 ctatcgatag tggcgatgaa gaagacaaac cactggtaaa ggaaaatgtg ggtgaagcag
     2041 actttgtagc gctggaggga tttgaaacgc tgctggccgg gcgacaccag gttgcttttg
     2101 gcgggcaatt tgcgcaggcg ccttcgcaaa actgggaggg aactgtggtg cctttcaata
     2161 ccaaaccaca accgagct
//
LOCUS       DATIQF010000539         6704 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_84713, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000539 DATIQF010000000
VERSION     DATIQF010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6704
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84713"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..4621
                     /locus_tag="VLL95_08930"
     CDS             <1..4621
                     /locus_tag="VLL95_08930"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HSR39025.1"
                     /translation="NHIFFNSGKYDTDSSAGKTLLAHELTHTIQQGASPVASNIARKH
                     QFTAVQTKSIQMASAPQLDAAVALARGEQGKVIANKAQPNGERVGADRLVEYFKTTFG
                     EDKIIPRYTGAPNTVVESLIRKKTTTMGQVPNQPDPNMKKERDAMPSWCGIFVFWALN
                     KAGIPMPKWKLGMPMMKPGSAYPAGYTPQAGDIAYRAKNSHYGIVTGTEGGKIKSVNG
                     NTAGTDNLGGEIQEQLHEPSQWQGFFNPLALATGPLTNATGTEQAQQGSTEPARSLRD
                     LRKAKYKAQRKENTQEETGYEEENTVAAKLQMSEWSVSSDGTLQRNATATEEKDDEAA
                     PEPLQRSENTAAADHPQTGNGKIQTKTNASARHHLQLVRAETLSRIHRSPQGLGMIQG
                     GWFDDAWDAVSGAVSAAAEWIEQGLDAAKEWLLGKVRDFVLEVPGYRLLRYILGYDPI
                     TGEEIQKTPDTLLDAVIGLIPLYGHVIRPVLDYFNATAPVANWLFNAVNRFIGLIESI
                     GSRFEQFWDSLSLDDVADPDGVMRRVVELFTGIVSDVLSFVEEAASTFLNMVKEIALT
                     NIGQFVQQHFPNAFDLLCVVLGENPITHESVPRNGGTIMNAGLKVLGERGEQIKQQIV
                     QNGIYAKAVAWIDRAIQVVTDTVADITNIFSNVWNEIRFESLFTPVETFLRISEHFTR
                     PITRVTSFISDAVIALLRILKDALMSWLSRTARNARGYFLITVILGRDPFTGQEVERN
                     AENLIHGFMSLMEGGEEQFQQMKESGAIDRTTAKIMAAIRRLNFTWEYIVGLFTSLWE
                     SLDWNDFLRPLDVFRRIIGTFADPVRRLVAFVIEIIKIVIEVLLVVMNFPTDLIANIF
                     RRIVQVIAQIRRDPIGFLKNLLRAIKQGFVQFFDNILQHLLRGLADWLFGQLGAIGIQ
                     MPPDLSFRSILNLVMQILGISLNQIMDRVWRKLAERIGQERVDKIRRMVDRLEGIWRF
                     VRDVMERGPIAIWEYIQQQLSNLWDTVIDSIKNWIMERVINAVVTRLLSMLDPTGIMA
                     VINSVIAIYRAIQSFIEYLRQMLEIVNSFVNGVAEIASGNIQVAADYLERTAARFIPI
                     MIGFLANQVGLGRIAGRIVEMIERVRGMVSRAIDWLIDRALNIGMPIINGILAVIEGG
                     ERLVERGREAVRGAASAVLGWLGFRQRFTTQSGEQHTMYVRDSGTEPKIIIESTPTEL
                     PIFFNQKETEINASATMAAEEKVEKTGKIRHGRNLLQGLSSLMNSSKRTNTNNPRIPS
                     MILELSQIVQQIDPAGVQQAVPPASIVPGFTNSKATSFAARHLYKGGGSIPKNHADGG
                     APTDANLPEAWQVLRDMQLSSRWVRFHILNEKLGGVAADSNLIPTPSYFNNEYRSALE
                     DDLKRFYRAGLPIWLQANITYRSGYNNLFVNTFNARAGAMKYQNNQWVEDPTKQKQFS
                     GTVDAPTPMAYNINNVMADAGEETLLVNTSTVTRAMIRLLRINQPPGGYTFFRQMERT
                     LASSAMGRPMLSMDHDYVSAQSPSNAQLNTINAYRRGLASVNWSF"
     gene            4633..5676
                     /locus_tag="VLL95_08935"
     CDS             4633..5676
                     /locus_tag="VLL95_08935"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HSR39026.1"
                     /translation="MKTQKVKRANKGLRKAKASFNTTFISPSLQRKCDKCEEEEKQKV
                     QKKADTNAAAVPAHTSQFISGLSAKGSPLPAAQQQFFGKRMAHDFSDVRIHTGPDADA
                     SAREINALAFTSGNHIVFKQGRFNPDTEEGKHLLAHELQHVVQQREGLHRKQADNGAE
                     NEERPAEPPYEIFGPVKEENTTHYGNCEGVSVQGVTNANYSHSHSASINPQPGTGCSG
                     CETANCISSSGTITSTFNANPTVSLPSVPSGLNECETNAVRTFINTTLRAHEQQHVAA
                     FNTYRGTVNTPYTYTGCRDGVNAYIASIHAGIESSRRAASDAASAALDPFNAAIPCDC
                     PDPETETEAPENE"
     gene            5753..>6704
                     /locus_tag="VLL95_08940"
     CDS             5753..>6704
                     /locus_tag="VLL95_08940"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR39027.1"
                     /translation="MSAPSLTNALQLLEDICEQRITTYFAGKAFSIETFQDDGRWTDA
                     RSALQLPDEFSNTELLLLLIALAPHARPGFYEAIITRLFPQGGEFTEMGGAKGLQHRG
                     MLPTGETALFILAGMDLEHRLKIQQLFSEEGWIGKFGLLQVEPMKEGEPAMSGRLLVD
                     EDWLEKLLLGREASPVFSAEFPARRIATAMTWNDLVLHPQTLEQVHDIRLWMEHRDKV
                     QADAVLARKIKPGFRVLFYGPAGTGKTLTATLIGKEFNLPVYRIDLSQVVSKYIGETE
                     KHLEWVFTRAVRKNWILFFDEADALFGKRTNVQSAHDKYAN"
BASE COUNT         1806 a         1769 c         1756 g         1373 t
ORIGIN      
        1 gaaccatatc ttcttcaaca gcggaaaata cgatacagat tcttccgccg ggaaaacctt
       61 gctggcccac gagctcaccc ataccattca gcaaggcgcc agccccgtgg cctcaaacat
      121 tgcccgcaaa caccagttta cagccgtaca aaccaaaagc atccaaatgg ccagtgcgcc
      181 acaattggat gccgccgttg ctttggccag gggtgagcag ggcaaggtga ttgccaacaa
      241 agcacagccc aacggcgaaa gggtaggcgc cgacaggctg gtagaatatt tcaaaaccac
      301 ttttggcgaa gacaagatca taccccgata taccggtgcg cccaataccg tagtggaatc
      361 gctcattcgt aagaaaacca ccaccatggg ccaggtgccc aaccagcccg atcccaatat
      421 gaaaaaggaa cgcgatgcca tgcccagctg gtgcggcata ttcgtgttct gggcgctcaa
      481 caaagcgggc atacccatgc caaaatggaa actgggaatg cccatgatga aaccaggctc
      541 cgcctatcca gccgggtata caccacaggc cggcgacatt gcttaccgcg ccaagaactc
      601 ccattatggc atcgttaccg gaactgaagg aggtaagatc aaatcggtga atggcaacac
      661 tgccggtacc gacaacctgg gtggtgaaat tcaagagcaa ctgcatgagc catcacagtg
      721 gcagggtttc ttcaatccgc tggcgttggc gaccggtccg cttaccaatg ctacgggtac
      781 cgaacaagcg cagcaaggca gcaccgaacc ggcccgcagt cttcgtgatt tacgcaaagc
      841 caaatacaag gcacaacgga aagaaaacac ccaggaagaa accggctatg aagaagaaaa
      901 tacagtagcg gccaaactgc aaatgagtga atggtcggtg agcagtgacg gcaccttgca
      961 aaggaatgcc actgccacgg aagagaaaga tgacgaggca gcacctgaac cactgcagcg
     1021 aagtgaaaac accgcagcgg ctgatcaccc acaaacaggc aatggaaaaa ttcaaaccaa
     1081 gaccaatgcc agtgcccgcc accatttgca actggtgagg gcggaaacac tttcacgcat
     1141 ccaccggagc ccgcaagggt tgggcatgat ccagggcggt tggttcgatg atgcctggga
     1201 tgcggtaagt ggcgcagtaa gtgcagccgc cgaatggatt gaacaaggac tggatgccgc
     1261 caaagaatgg ctgctgggca aggtgcggga ttttgtgctg gaggtgcccg gttatcgttt
     1321 gctgcgttac attcttggat atgatcccat taccggcgag gaaatacaga aaacgcccga
     1381 caccctgctc gatgccgtca ttgggctgat accgttgtat ggccatgtca tcaggccggt
     1441 gctggattat ttcaatgcca ctgcgcctgt ggccaattgg ctgttcaatg ctgtgaaccg
     1501 ctttattgga ttgattgaaa gcatcggcag ccggttcgaa caattctggg acagcctgag
     1561 cctggacgat gtggccgacc cggatggcgt gatgcgcagg gtggttgaat tattcaccgg
     1621 tattgtaagc gacgtgctct cctttgtgga ggaagctgcc tccactttcc tgaacatggt
     1681 gaaggaaata gcactcacca atatcgggca gtttgtacag caacacttcc ccaatgcatt
     1741 tgatctgctc tgcgtggtac tgggcgaaaa ccccatcacg catgaaagcg tgccccgcaa
     1801 cggtggcacc attatgaatg cgggcctcaa agtgttgggc gaacggggcg agcagatcaa
     1861 acaacagatc gtacaaaacg gcatttatgc caaagccgtg gcgtggatcg accgggccat
     1921 ccaggtagta actgatacgg tggcagacat caccaatatc ttcagcaatg tttggaatga
     1981 gatccgtttt gaatcgttgt ttacgccggt agaaactttc ctgcgcatca gcgagcattt
     2041 cacccggccc attacccgcg tcaccagttt catcagcgac gcggtgatag ccctgctgcg
     2101 catcctgaaa gatgccctga tgagctggct tagtcgtact gcccgaaatg caaggggcta
     2161 cttcctcatc acggtcatcc ttggccgcga tccgtttacc gggcaggaag tggaacgaaa
     2221 tgccgaaaac ctcatccacg gtttcatgag cctgatggaa ggtggcgaag agcaattcca
     2281 gcaaatgaag gagagcggtg ccatcgatcg caccacggcc aaaataatgg cagccatccg
     2341 tcgactcaat ttcacctggg aatacattgt ggggctcttc acttcccttt gggaaagcct
     2401 cgactggaac gacttcctcc ggccattgga tgtgttccgc aggatcatcg gcactttcgc
     2461 cgatccggtg cgcaggctgg tggcgtttgt cattgagatc atcaaaattg tgatcgaggt
     2521 attgctggtg gtcatgaact tccccaccga cctcatcgct aatatattcc gccgcatcgt
     2581 gcaggtaatt gcacagatcc gccgcgatcc cataggcttc ctcaaaaacc tgttgcgggc
     2641 catcaagcag ggctttgtgc agttcttcga caatattctg caacacttgt tgcgtggcct
     2701 ggccgattgg ctgtttggcc agctgggagc catcggcatc caaatgccac ccgacctcag
     2761 tttccgcagc atcctcaacc tggtgatgca gatccttggt atttcgctca accagatcat
     2821 ggatcgggtg tggcgaaagc tggctgaacg catcggtcag gagcgggtag acaaaataag
     2881 gcgcatggtc gacaggctcg aaggcatatg gcgttttgta cgggatgtga tggagcgtgg
     2941 acccatagcg atatgggaat acatccagca acaactcagc aatctctggg acaccgtgat
     3001 cgacagtatc aagaattgga tcatggagcg ggtgatcaat gcggtagtaa cccggctgct
     3061 cagcatgctc gatcccaccg gcatcatggc cgtcatcaac agtgtgatcg ccatttaccg
     3121 cgccatccaa tctttcattg aatacctgcg gcaaatgctc gagatcgtca actcatttgt
     3181 aaatggtgtg gcagagatag ccagtggcaa catacaggtg gcagccgatt acctcgaacg
     3241 taccgccgcc cggttcattc ccatcatgat cgggttcctg gccaaccagg taggcctggg
     3301 tcgcattgca ggcaggattg tggagatgat agaaagggta cggggcatgg taagccgcgc
     3361 catcgattgg ctgatagacc gggcgttgaa tatcggcatg cccatcatta atggcatatt
     3421 ggctgtaata gaaggcggtg aacggttggt agagagagga agggaggctg tgagaggagc
     3481 agcatctgca gtgcttggct ggcttggatt caggcaaaga ttcaccacac aatcaggcga
     3541 acaacacaca atgtatgtac gcgacagcgg cacggagcca aagatcatta ttgaaagcac
     3601 cccaacagaa ctgccaatct tcttcaacca aaaggaaaca gaaataaatg cttcggcaac
     3661 tatggcggca gaggagaagg ttgagaaaac aggtaaaata aggcatggcc gcaacctgct
     3721 tcaaggacta agctctttaa tgaatagcag taaacgcacc aataccaata atccgcgtat
     3781 tccatccatg atcctggaat tgtcccaaat cgttcagcaa attgaccctg ccggggtgca
     3841 gcaagctgtt cctccagcaa gtattgtacc tggattcact aattcaaaag caaccagttt
     3901 tgcagcaagg catctgtaca agggaggagg cagtattccc aaaaatcatg cggatggagg
     3961 cgcccctacc gatgccaatc ttccagaagc gtggcaggta ctgcgtgata tgcagctcag
     4021 cagcagatgg gtaagattcc acatcttgaa cgaaaagttg ggtggagtcg cagctgattc
     4081 gaatctcata cctaccccga gttatttcaa caacgaatac cgatctgcat tggaagacga
     4141 tttgaagcgc ttttaccggg ccggtctgcc catttggcta caggcaaaca ttacttacag
     4201 atcaggatac aataacttgt ttgtaaacac attcaatgcg agggcaggcg ccatgaaata
     4261 ccaaaataat caatgggtag aagacccaac caaacaaaag caattcagcg gaacagttga
     4321 tgcacctaca cctatggcct acaacattaa taatgtaatg gctgatgcgg gtgaagaaac
     4381 attgttggtg aacacatcga ctgtgacccg agcaatgatt cgattgcttc gcattaacca
     4441 gccaccaggc ggctatactt tcttccggca aatggaacga acattggcat ccagcgcaat
     4501 gggacgccca atgttgtcga tggatcacga ctatgtgtcg gcacaatcgc ccagcaatgc
     4561 acagctcaat acaatcaacg cttaccgccg agggctagcc agtgttaatt ggtcattcta
     4621 aaaattccag ttatgaaaac tcaaaaggta aaacgagcaa acaaaggcct gaggaaagca
     4681 aaagcttcct tcaataccac cttcatctcc ccttccctcc aacgcaaatg cgacaaatgc
     4741 gaagaagagg aaaaacaaaa agtgcagaag aaagccgata ccaatgcagc ggcggtacct
     4801 gcgcatacca gccagtttat cagtggcctg tcggcaaagg gcagtccgct gccggctgcc
     4861 caacagcagt ttttcggaaa gcgaatggcc cacgattttt cggacgttcg catacataca
     4921 gggccggatg ccgatgccag tgcccgggag ataaatgccc tggccttcac ctcaggcaac
     4981 cacatcgttt tcaaacaagg caggttcaac ccggatacgg aggaaggcaa acatttgctg
     5041 gcgcatgaac tgcaacatgt ggtacagcag cgggaaggac tgcatcgcaa gcaagcagac
     5101 aatggcgcag agaatgaaga aagacccgca gaacctccct atgaaatttt cggccccgtg
     5161 aaagaagaaa acaccaccca ctatggcaat tgtgaaggcg tatcggtgca gggtgttacc
     5221 aatgccaact acagccacag tcattcggct tccatcaacc cgcagccggg cacaggctgc
     5281 agtggctgcg aaaccgccaa ttgcatcagc agttccggca ccatcacttc caccttcaat
     5341 gccaacccca cggtgtcact tccctctgta ccctcagggc tcaacgaatg tgaaaccaat
     5401 gccgtcagaa cattcatcaa caccacgctg cgggcacatg aacaacaaca cgtagccgca
     5461 ttcaatactt accgcggaac cgtgaacacc ccttacactt ataccgggtg ccgcgatggg
     5521 gtgaatgcct acatcgccag catccatgcc ggtatcgaat cttcgaggcg ggcggccagc
     5581 gatgccgcca gcgcagcgct tgatcctttc aatgcggcca tcccctgcga ttgcccagac
     5641 ccggaaacag aaacagaagc cccggaaaat gaatagacaa agtgactcgc cgaccggcac
     5701 cggccggatt ttagggaatg cagatttgca gggttcgtat taaattgtgt acatgtccgc
     5761 cccatcactt accaacgcac tccaactact cgaagacatt tgcgagcaaa gaattaccac
     5821 ctatttcgct ggtaaagcat tcagcataga aacattccag gacgatggcc gatggactga
     5881 tgcccgatcc gcactccaac taccggatga attttccaat actgagttgc tcttgttgct
     5941 gatcgcatta gcgccgcatg caaggccggg tttttatgaa gccatcatca cccggttgtt
     6001 tccgcaggga ggcgagttta ctgaaatggg aggggccaaa ggcttgcaac accgcggcat
     6061 gctgcctacc ggtgagactg cgttgttcat actggcaggt atggatttgg agcatcgttt
     6121 gaagatccag cagttgttca gtgaagaagg gtggattggc aaatttggcc tgctgcaggt
     6181 ggagcccatg aaggaaggag agcccgccat gagcggtcgg ctgcttgtgg acgaagactg
     6241 gttggagaaa ttgctgctgg ggcgagaagc cagcccggtt ttcagcgccg aattcccggc
     6301 ccggcgcatt gccaccgcca tgacatggaa cgacctggtg ctgcatccgc aaaccctgga
     6361 acaagttcac gatatacgcc tgtggatgga gcatcgcgat aaggtgcagg ccgatgccgt
     6421 gctggcccgc aaaataaaac ccggcttcag ggtgttgttc tatggccctg cgggtaccgg
     6481 caaaactctt accgctacgc tcattggcaa agagttcaat ttgcctgtgt accgcataga
     6541 tctgagccag gtagtgagca agtatatcgg ggaaactgaa aaacacctcg agtgggtttt
     6601 taccagggca gtccgcaaaa actggatcct cttttttgat gaagccgatg cattgtttgg
     6661 caaacgtacc aatgtgcaaa gtgcccacga caaatacgcc aacc
//
LOCUS       DATIQF010000540         5958 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_221590,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000540 DATIQF010000000
VERSION     DATIQF010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5958
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221590"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..480
                     /locus_tag="VLL95_08945"
     CDS             <1..480
                     /locus_tag="VLL95_08945"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSR39028.1"
                     /translation="FAADLKQETGSSVWLGGFLIFVCATTFSMYVIFSGRLIPQIGVG
                     LFTAVAMLSATAGIVLHFLLTGNHLQQLLAFHWQIQVLMALMGVFATVVPSFFVSSGI
                     KLIGSSNVAIISSIGPMITIALAWYFLQEPFGWQQLVGTLLVVAGVFWVSKKVSVKN"
     gene            complement(483..1856)
                     /gene="hisS"
                     /locus_tag="VLL95_08950"
     CDS             complement(483..1856)
                     /gene="hisS"
                     /locus_tag="VLL95_08950"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: protein motif:HMM:TIGR00442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HSR39029.1"
                     /translation="MSKPSLPQGTRDFNAEVVRKRSYIFQTIRQVFERYGFQPLETPA
                     MENLDTLMGKYGEEGDKLIFKILNNGLDRPEKHEKARADFEKVLAGKNVKEITERALR
                     YDLTIPFARYVAMNHGQLTFPFKRYQMQPVWRADRPQKGRYREFYQCDADVVGSNSLL
                     NEVELANIYADAFRQLEIPVEIKINNRKILAALAEVCVGADKMMDITIAIDKLDKIGI
                     DKVKEELAQRGLNEAQISTIEKYLSLEGSNDEKLSQLEALLSNNETGAKGIAEMKYVL
                     DFVALSGKPIQLVADFTLARGLNYYTGTIFEVKAIGVQMGSIGGGGRYDDLTGLFGVP
                     NIPGVGISFGVDRIYDVMEELQLFPATVQTGTQVLFFNLGINECKKAFELMQQLREKG
                     IACELFHEQAKFDKQFKYAEKKGIAYAVIIGDQELANNTCTVKNLSAGTQETMPQATL
                     ATNWQPA"
     gene            complement(1869..2345)
                     /locus_tag="VLL95_08955"
     CDS             complement(1869..2345)
                     /locus_tag="VLL95_08955"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: protein motif:HMM:NF013607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase"
                     /protein_id="HSR39030.1"
                     /translation="MKILMVCLGNICRSPLAEGIMQYKADEAGLDWTVESAGTGSWHI
                     GEGPHPLSQKTAMHYGINIGHQRARRFRPTDPLEFDRIFFMDEDNLRDARQIAGQQWQ
                     AHKASLLMDLIHPGKKMAVPDPYYGDESGYHTVFQMISEACDAFIAQHIQSFEKSR"
     gene            2514..2792
                     /locus_tag="VLL95_08960"
     CDS             2514..2792
                     /locus_tag="VLL95_08960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39031.1"
                     /translation="MTPTPGTQRKKSKAPGPRVLLDYFMSLLMLFFGIFIIWSEKIIG
                     YDYFKDSSLVSGSMKWVIGILFMLYGVFRAYRGYLLDQRDKMPSQRED"
     gene            2803..3756
                     /locus_tag="VLL95_08965"
     CDS             2803..3756
                     /locus_tag="VLL95_08965"
                     /inference="COORDINATES: protein motif:HMM:NF024257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HSR39032.1"
                     /translation="MKKKMWLQQWNRLAGASLGLALFFLLSGCGGDGAKLPDTNDTTT
                     KGVLRVSIDESFKPVLDSQIKVFMASFPEAKIVAEYKSEAECLKDLENDSTKMVIVTR
                     GLSREEADRFKEKLGFGPSWGVLAYDAVAIITNKKSKDSTFTLSELRSMLEGSSADKK
                     KIVMDGLSATSTVRFAIDTILKGKALGPNVVAAKSSPEVIDYVSSDPNAIGMIGVSWI
                     GNGDDPEQLSFLSKVNVAAMMCETCEEEGVYVKPYQANIAMGRYPLPRTLNYIMKENY
                     QGIGRGFVNFMIHERGQLIFKRAYLLPGRMQFDVRNMDINQ"
     gene            3900..5657
                     /locus_tag="VLL95_08970"
     CDS             3900..5657
                     /locus_tag="VLL95_08970"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR39033.1"
                     /translation="MKKLFFSLVALVAVVAVFAQTQQEAFKDLLDGRVLKAQKDFENL
                     VAKEPGNAEFNYWLGQIYLMEATLPNYSASGQQQILREKARAVYTKAMTSTNQNPLIL
                     VGMGHLDLLDGKNAEARAKFDQAILATANKKNKKYGDPAILNAIVRANASGDSKTGDA
                     TFAIEKATQSEELLGATPDMFTNLGVIYLKGGGENGGLAKRAFEKALDLDPNFAPAYW
                     RVGRIFESQKNPEMFLGFYEKAIGANPKFAPAYLSLYQYYSNRDVNKAKQYLDFYIAN
                     ADKDRETDYFYADYLFRAGQYQESLNKGKEIEAALAGDKYPKVYKLYAYNYDRLKDSV
                     NAMNNMEKYMNEEAPERISGDDYAFMAASYLKVPGNTTKAEVVAEKAIESDTSVVGRV
                     AIMESLANSYSAQGDWKGTYKWLARKQQLKPDNSARNFYFLADAAHKAKEFKAAQEVA
                     SQYIATYPDQPQGYFLKWRSAIASDPDTSTGLAIPVVDEYTAFLMKDTAKNKGRIIQN
                     HGYKVYYYLVKVQDYPKALESANAILAIDPTNNYGAMAKSEAERLIKATGKGGGSGAS
                     KAPAGGSATGAGGRLNPRP"
BASE COUNT         1505 a         1432 c         1466 g         1555 t
ORIGIN      
        1 tttgccgcag acctgaagca ggaaaccggt tccagtgttt ggctgggcgg ctttctcata
       61 ttcgtatgcg ccaccacctt ttcgatgtac gtcattttta gtggcagact tattccgcaa
      121 ataggtgttg gattgtttac ggctgtagcc atgctgagcg ccactgccgg cattgtgcta
      181 cactttctgt tgaccggtaa tcatttgcag cagttactcg cctttcattg gcaaatccag
      241 gtgctcatgg cattgatggg cgtttttgcc acagtcgtac cttctttttt tgtttcctca
      301 ggtatcaaat tgattggcag cagcaatgtg gccatcatca gttccattgg acctatgatc
      361 actattgcat tggcctggta ttttctgcag gaaccttttg gctggcaaca actggtgggc
      421 accctgcttg ttgttgcagg tgtattttgg gtaagtaaaa aagtctcagt aaaaaattag
      481 tatcaggcag gttgccagtt ggtggccagc gttgcctgtg gcattgtttc ctgtgtaccg
      541 gccgacaagt ttttaaccgt gcaggtattg ttggccaact cctggtcgcc aatgatcact
      601 gcataagcga tgcccttttt ttcagcgtac ttaaactgct tgtcgaattt ggcctgctca
      661 tgaaacagct cacaggcaat gcctttttca cgcaattgtt gcatcagttc aaaggccttt
      721 ttacactcat tgataccgag gttgaaaaaa agcacctgcg tgcctgtttg cacagtggcg
      781 ggaaacaatt gcagttcttc cattacatca taaatgcggt cgacaccaaa gctgataccg
      841 acgccgggaa tattgggtac gccaaacaag ccggtaagat cgtcgtaacg tccgcccccg
      901 ccgatgctgc ccatttgcac acctattgct tttacttcaa aaatggtccc ggtgtaatag
      961 ttgaggcccc tggccaatgt gaagtcggcc accagttgaa tgggtttgcc tgacagggct
     1021 acgaaatcga gcacatactt catttcagca atgcctttgg cgccggtttc attgttggag
     1081 agcagtgcct ccagttgtga aagtttttca tcattgctgc cttccagcga aaggtatttt
     1141 tcgatggtgc tgatttgtgc ttcattcaat ccccgctgtg ccagttcttc cttcactttg
     1201 tcgatgccaa tcttgtcgag tttgtcgatg gcgatggtga tgtccatcat tttgtcggca
     1261 ccaacgcaca cttctgccag tgctgccagt attttccggt tgttgatctt tatttcaacc
     1321 gggatttcca attggcgaaa agcatctgca taaatattgg ccaactccac ttcattcagc
     1381 aggctgttgc tgcccactac atcagcatcg cattgataaa actctcggta gcgtcccttc
     1441 tgcggcctgt cggcacgcca cacgggttgc atttgataac gtttgaaggg aaaagtgagc
     1501 tgcccgtggt tcatggccac atagcgggca aagggaatgg tgagatcata gcggagggcc
     1561 ctttcggtaa tctccttcac atttttccct gccagtactt tttcaaaatc ggcccttgct
     1621 ttctcgtgct tttccggccg gtcgaggcca ttgttcagga tcttgaaaat gagtttgtcg
     1681 ccttcttcgc catattttcc catcagcgtg tcaaggtttt ccatggcagg cgtttccagt
     1741 ggttgaaagc cgtagcgttc aaatacctgg cgaatggtct gaaaaatata actgcgcttc
     1801 cgaactactt cggcgttaaa gtcgcgggta ccctggggca aagaaggttt ggacataatg
     1861 tattattact atctgctttt ttcaaaggat tggatgtgtt gggcaatgaa ggcgtcacat
     1921 gcttcgctga tcatttgaaa taccgtgtgg taaccagatt catcgccgta atacggatcg
     1981 ggcaccgcca tttttttgcc aggatgaatc aggtccatta acaacgaagc tttgtgggcc
     2041 tgccattgct gacctgctat ttgccgggcg tcccgcaggt tgtcttcatc cataaaaaag
     2101 atccggtcaa attccaacgg atcagtgggc ctgaaacgtc gtgcccgctg atgcccgatg
     2161 ttgatgccat aatgcatggc cgttttctgg gaaagcggat gcgggccttc accgatgtgc
     2221 cagctcccgg tgccggcact ttccaccgtc cagtcaagtc cggcttcatc ggctttgtac
     2281 tgcatgatgc cttctgccaa agggcttcgg caaatatttc ccaaacaaac catcaggatt
     2341 ttcatgtatg ctcaatttgg atccggggct tcaaaagtag cctttaccgc ctaagtggaa
     2401 gatgcctgtt gcagaataca taacctgatg ggtattggct tatggatatc tgtaaccatt
     2461 gttatcttat actagggttg aaattgttat ctttcggccc tttccaaaaa aatatgactc
     2521 caactccagg tactcaaaga aaaaaaagca aagcgcccgg ccccagggtg ctgttggatt
     2581 atttcatgtc cttgctgatg ttgtttttcg gcatttttat aatctggtcg gaaaagatca
     2641 ttggctacga ctacttcaaa gacagctcgc tggtgagcgg atccatgaag tgggtgattg
     2701 gaatcctgtt catgttgtac ggagtgttca gggcataccg gggatatctc ctggatcaac
     2761 gagacaaaat gccatcgcag cgagaagact aaatagaaat ctatgaaaaa gaaaatgtgg
     2821 ttgcagcaat ggaatcgcct ggccggcgcc tccttagggt tggccctgtt tttcttgctg
     2881 tcaggatgcg gaggagacgg ggccaaactg cccgatacga atgacacgac taccaagggc
     2941 gtgctgcggg tgagcattga tgagtcattc aagcccgtgc tggattcaca gatcaaggta
     3001 ttcatggctt cttttcctga ggccaaaata gtggctgagt acaagtctga ggctgaatgc
     3061 ctgaaggacc tggaaaatga cagcaccaag atggtaattg tcacccgtgg cttgagtaga
     3121 gaagaagcgg accggttcaa ggaaaaactg ggatttggac cgtcatgggg ggtactggcc
     3181 tatgatgcgg tagccatcat caccaacaaa aaatcaaaag acagcacctt cactttgtcg
     3241 gaactgcgca gtatgctgga aggcagcagc gccgacaaaa agaaaatcgt gatggacggg
     3301 ctgagtgcca ccagcacggt gcgatttgct atcgatacga ttctcaaggg caaggccctg
     3361 ggacccaatg tagtggctgc caagagcagt cctgaggtaa ttgattatgt gtccagcgac
     3421 cccaatgcta ttggcatgat cggcgtaagc tggattggca atggcgacga tccggagcaa
     3481 cttagtttcc tgtcgaaggt gaatgtggcg gcaatgatgt gcgagacttg cgaagaagaa
     3541 ggtgtatatg tgaagcccta ccaggccaat attgccatgg ggcgctaccc gcttccccga
     3601 acactcaact atatcatgaa agaaaattac cagggcattg gccgcggatt tgtcaacttc
     3661 atgatccacg aaagagggca gctgattttc aaaagagctt acctgttgcc gggccgtatg
     3721 cagttcgatg tgcgaaacat ggacataaac caatagacat tgttaataga atcgtaagaa
     3781 tacttgaatg atatgcaacg atccggttga tttcgtcaca taattataat ttgatcaacc
     3841 gaatactcga attaattgat gtttcatttt ttatttgcaa aaatttcaaa gcaggcataa
     3901 tgaaaaagtt gtttttctcc ctggtggcat tggtagcggt agtggctgtt tttgcccaaa
     3961 cgcagcaaga ggcgttcaaa gaccttttag acggtcgggt gctgaaagcg caaaaagatt
     4021 ttgagaacct ggtggccaaa gaaccaggca atgctgagtt caattattgg ctcggtcaga
     4081 tctacctgat ggaagccact ttgccaaact actcagcctc tggacagcag cagatcctgc
     4141 gtgaaaaagc cagggctgtg tacaccaaag ccatgacttc caccaaccag aatcccctga
     4201 ttttggtggg aatgggtcat ttggatttgc tggatggtaa gaatgcagag gcccgtgcca
     4261 agtttgacca ggctattctt gctaccgcca acaagaaaaa caagaaatat ggcgaccctg
     4321 ccattttgaa tgccattgtg cgtgccaatg cctccggcga cagcaagacc ggcgatgcaa
     4381 cctttgccat tgaaaaggct acgcaaagtg aagaattgct gggtgccacc cctgatatgt
     4441 tcaccaacct gggtgtaatc tacctgaaag gtggtggcga aaacggtggc ctggccaagc
     4501 gtgcctttga aaaagcactc gatctcgatc ccaattttgc acctgcttat tggagagtgg
     4561 gtcgcatttt cgaaagccag aagaaccctg aaatgttcct gggcttttat gaaaaggcca
     4621 ttggcgccaa ccccaaattt gctcctgctt acctcagttt gtaccagtat tacagcaacc
     4681 gcgatgttaa caaggccaag caatacctcg acttctacat cgctaatgcc gacaaggacc
     4741 gtgaaactga ctatttctat gccgattacc tgttccgtgc cggtcagtac caggagtcgc
     4801 tgaacaaggg caaggaaatt gaagctgcac ttgccggcga caaatacccc aaagtgtaca
     4861 aactgtatgc ctacaactat gaccgcctga aggactcagt aaatgccatg aacaacatgg
     4921 aaaaatacat gaatgaagaa gcgcctgagc gtatttctgg cgacgattat gccttcatgg
     4981 ctgcttccta cctcaaagtg cctggcaata ccaccaaggc tgaagttgtg gctgaaaaag
     5041 ccatcgaatc agatacttca gttgtcggcc gtgtagccat catggaaagt ttggccaaca
     5101 gctactctgc ccagggcgat tggaaaggca cctacaaatg gctggcccgc aagcagcaac
     5161 tgaagcctga caattcagcc cgtaatttct acttcctggc cgatgccgca cacaaagcca
     5221 aggagttcaa ggctgcccag gaggtagctt ctcaatacat tgccacttat cccgatcaac
     5281 cccagggtta tttcctcaag tggaggtctg ctattgcttc cgaccccgat acgtccaccg
     5341 gcttggcaat ccccgttgtg gatgagtaca ctgcattcct catgaaggat acagctaaaa
     5401 ataaaggccg catcatccag aaccacgggt acaaagtgta ctactacctg gtaaaagttc
     5461 aggattaccc caaagcattg gaatctgcca atgccatcct tgccattgac cccaccaaca
     5521 attatggggc catggccaag agcgaagcgg agcgcctgat aaaggcgact ggaaaaggcg
     5581 gaggcagtgg agcgtccaag gcaccggccg gaggttcggc cacgggtgca ggaggccgat
     5641 taaatcccag accgtagtgt ttttcacaaa taattgatcc cccgcctgtc gggggatttt
     5701 ttatttcatt aaaaaccatc cctcacgatg tatttagtac acaggaactt atttttgccg
     5761 cgcattaatc caatagtggc atgtttcaat tagtggatgt actcaattct ccttcccagt
     5821 atctgccaat aggtatccaa ctactttttg caatcggttt tgtagcagcc atgatagctg
     5881 ccagtcacct tttggggccc cgccgcaaaa ccagcgacaa actcgagaac ttcgaaagtg
     5941 gcattgagca aataggca
//
LOCUS       DATIQF010000541         2090 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_267380,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000541 DATIQF010000000
VERSION     DATIQF010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267380"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(70..1470)
                     /locus_tag="VLL95_08975"
     CDS             complement(70..1470)
                     /locus_tag="VLL95_08975"
                     /inference="COORDINATES: protein motif:HMM:NF018561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1254 domain-containing protein"
                     /protein_id="HSR39034.1"
                     /translation="MKSKFLIGIGLMAIAFGCKSPKTEVTPEEARAIAKEAYIYGFPL
                     VDNYRIFYSYFADSSDPEFKAPLNQLKNIPKVYTHEDKSVQTANSDTPYSWAGLDLRG
                     EPIVIILPPIEYNRYYSVQLIDGFTHNFDYLGSRTTGNKGGKFLIAGPDWKGDTPAGF
                     DKVIKSETQMVLALIRTQLFDPSDLDKVIKIQSEYQLMPLSAYQKQSAPAQPSAISWL
                     KPLSSEEQKSSLMIFNQLNFWSQFCGIHESEKALFERFAKIGVVPGKTFDTAALSPEI
                     KEAIGAGIQDAWKEFAAYNEAEIKTGKVGSAEAFGTREHLNNNYMLRMAGAVLGIYGN
                     SKEEALYPIYQTDSEGQPLNAATNKYTLTMKSDEMPPVNAFWSYTMYELPSRLMLENP
                     LNRYLINSPMVPNLKRNADSSITLYIQHESPGKDKENNWLPAPNGPFFFVNRLYWPKP
                     EALNGTWKPKPLVRVQ"
     gene            complement(1718..>2090)
                     /locus_tag="VLL95_08980"
     CDS             complement(1718..>2090)
                     /locus_tag="VLL95_08980"
                     /inference="COORDINATES: protein motif:HMM:NF018452.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1214 domain-containing protein"
                     /protein_id="HSR39035.1"
                     /translation="TAKQDSKGNLLRADKTYRLRIPAKVPTAQFWSVDLYSEDTRRHY
                     ENGLGTVRSVAINSRMQDIKRNADGSVDLYIGAKAPAGKESNFMKTVGKDGWFVYFRL
                     YAPLEPFFDKTFALPDFEMVD"
BASE COUNT          499 a          481 c          511 g          599 t
ORIGIN      
        1 ttagccagcc ttattgtttg gattcggttg cagatgttcg ctgtttcgaa cggacctccg
       61 tcatttccat tattgtacac gaaccaatgg cttgggtttc caggttccgt ttaatgcttc
      121 cggcttgggc caatacaacc ggtttacgaa aaagaaggga ccattgggag cgggcagcca
      181 gttgttttcc ttgtccttgc caggtgattc atgctggata tacagcgtaa tgctgctgtc
      241 tgcattgcgc ttcaggttgg gcaccatagg agagttgatg aggtagcggt taagcgggtt
      301 ttccaacatc aacctggagg gaagctcata catggtatag gaccaaaacg catttaccgg
      361 gggcatttca tcactcttca tggtgagggt atacttgttg gtggctgcat tcaaaggctg
      421 gccttccgaa tcagtttgat aaatgggata aagggcttct tctttcgagt tgccataaat
      481 acccagaacg gcaccagcca tgcgaagcat gtaattgtta ttcaaatgtt cgcgggtgcc
      541 aaatgcctcg gcgctaccca ctttgcctgt tttgatttca gcttcgttat acgccgcaaa
      601 ctccttccat gcatcctgga taccggcacc tatagcttct ttgatttcgg ggctgagtgc
      661 agcagtatca aaggttttgc cgggcaccac gccaattttg gcgaagcgtt caaaaagcgc
      721 tttttcagat tcatgtatgc cacagaactg cgaccagaaa ttcaactggt tgaagatcat
      781 caggctggat ttttgttctt cgctgctgag tggtttcaac cagctaatgg cggaaggctg
      841 cgctggagcg ctctgcttct gataggcaga caatggcatc aactggtatt cagattggat
      901 cttaatgacc ttgtcaagat cactgggatc aaacaactgg gtgcgaatca aggctaacac
      961 catttgggtc tccgacttga tcaccttgtc gaaaccggca ggagtgtcac ccttccaatc
     1021 cggacctgct atgaggaatt taccgccttt gtttcctgta gtccggctgc ccaggtaatc
     1081 aaaattgtgg gtaaagccgt cgatcagctg gacagagtag tagcggttgt attcaatagg
     1141 agggagaatg ataacaatcg gctcccccct gaggtcgagt ccagcccagg aataaggtgt
     1201 atccgagttg gccgtttgta ctgatttgtc ttcgtgtgta tacaccttgg gtatattctt
     1261 caactggttg agcggtgctt tgaattccgg atcactgcta tcggcgaaat aggaatagaa
     1321 aatccggtaa ttgtctacca atggaaaacc atagatgtaa gcttctttgg caatagccct
     1381 tgcttcttcg ggcgttactt cagttttagg gcttttacag ccaaaggcaa tagccatgag
     1441 cccgatcccg atcaggaatt tgcttttcat tttttcaatt tttataggat gttttggtgc
     1501 agaaatatgt tatcgttaaa agtaaagctt aatgtcgttg gcaggactta ttggggagta
     1561 atgaatccac ccatgcctcg cttcattcga tatcatgcgg gcagtttttt gccagtagga
     1621 ataccaataa gcgaggcagg tgcggctgca gaatatgttg ttgcgttctt actgaaaata
     1681 acgacaatca acgttgctgc aaatgcgcta ttttgattca atccaccatt tcaaaatcag
     1741 gcagtgcaaa cgtcttgtcg aagaaaggct ccaatggcgc ataaagtcgg aaatacacaa
     1801 accaaccatc ttttcctacg gttttcataa agttgctctc ctttcctgcc ggtgctttgg
     1861 caccaatgta taaatcaacc gatccatccg cattacgttt aatgtcctgc atccggctgt
     1921 tgatggccac cgaacgcacg gttcccaggc cgttttcata atgccgtctt gtatcctcac
     1981 tatacaaatc caccgaccag aattgggcag tcggcacttt ggcagggatg cgaagtcggt
     2041 aggtcttgtc ggcccgcagc agattccctt tgctgtcctg tttggcggtc
//
LOCUS       DATIQF010000542         3731 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_115318,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000542 DATIQF010000000
VERSION     DATIQF010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3731
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115318"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..2053)
                     /locus_tag="VLL95_08985"
     CDS             complement(83..2053)
                     /locus_tag="VLL95_08985"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HSR39036.1"
                     /translation="MKLLFGLPLLISTLIANHSLQAQNKHALIVAIGDYKPEKTNWGK
                     LSSANDVPFIKSSLEKQAFPAANIAVLQDQEATKNGIENAFAQLLAKVQPKDIVVIHF
                     SSHGVQLLDDNGDEIDGKDEAIVPYGAVYPKDLAQLNEFAEGYIRDDAFGKFIDALRS
                     KIGPEGNVIVILDACNSGTATRGTERVRGGKPAMVPPNFKEQQNTRAFPGSDFMEKGL
                     NATGKASYIVFSAARAEESNFEMKNDDNVSMGSLTYAISKAMDNLQPGTSYRSFFANV
                     LSTMNEEVPNQNPVIEGDNLDQGLFAGKMVYQKPYIEIKSLDGNILTLKGGKIQGLEA
                     GTLVALHKSGTNNPNESTLLAKGKVTASESFTSTVELEQADVIAKEADGWVFITEPIF
                     KSDPLVVAFLKNRPGSFSNEQLNILEAALTAMPAVSFKGTPELLISHGDVKDSIIIAS
                     NGLLFGTFKNAGELQEQLKHYIQYKFLKTLEIIDPAFDLEVRLLPIINGKTDTARNYS
                     KMVGGILELEDGDQFYIAAKNNTNRGLYVNILDLQPDGLINPVLPNKAFPIEKTELRI
                     EAGQERIIPYIMKIGPPLGMETYKVFVSRQEIDMESIALSNGLRARGNFSVIQELVND
                     SYTATSRGSSIVKTAEPDGAVYSIVFRIKEKK"
     gene            2175..2480
                     /locus_tag="VLL95_08990"
     CDS             2175..2480
                     /locus_tag="VLL95_08990"
                     /inference="COORDINATES: protein motif:HMM:NF039593.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-binding domain-containing protein"
                     /protein_id="HSR39037.1"
                     /translation="MKKLVSFLIAIAAFVAVNAIAQDQQQEKHKHEKEAKHKYECPMK
                     CEPASDKPGKCSKCGMDLKKIKAEDAKAWYECPMKCEPASAKPGKCGKCGMELKKKA"
     gene            2586..>3731
                     /locus_tag="VLL95_08995"
     CDS             2586..>3731
                     /locus_tag="VLL95_08995"
                     /inference="COORDINATES: protein motif:HMM:NF020976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase D family protein"
                     /protein_id="HSR39038.1"
                     /translation="MRRVFLLLLAAFAVLNVGAQILAGPMLGPVSLRSAGVWVALEKP
                     GNTAQVKYWTKGADKSKARDAWRANASSNEGAPYNIQSFTLTDLEPGTTYEYEVSVTD
                     KNVTNARPASISKGEVTTQQLFQWRRNAPDFTFLTGSCAYFNQPQYDRPGKPYGLDSS
                     IFETMAKEKAAFMLWLGDNWYTREVDYSSEWGLWYRAMHDRSQPILKDFWKAMPHLAI
                     WDDHDFGPNDYGKSYLLKNTSRDVFNAMWMNPSSGEYNEGIYTRHTYSDVDFFMLDDR
                     WWRDFDRLPDSVNGKPNEQKRMYGKRQLEWLKNELRYSKTNPYISFRIIVTGSQVLNP
                     GSPFDKLLDFPVEYNELIHFIREEKIDGVVFLTGDRHHSEVIKVQHEG"
BASE COUNT          996 a          827 c          835 g         1073 t
ORIGIN      
        1 agactcctat tttcaatgtg ctggattaat aggtgaagaa aattgatgag aacaaagcag
       61 catattcaat tgggccttgc ttttatttct tttcttttat cctgaaaaca atactatata
      121 cagccccgtc tggttctgcg gttttgacaa tactgcttcc tcgtgatgtg gcagtataag
      181 aatcattgac caactcctga atcacagaaa aatttcctct tgctcgtaaa ccattgctca
      241 atgcaattga ctccatgtca atctcttgtc ttgatacaaa aaccttgtat gtttccatgc
      301 ccagtggagg gcctattttc atgatataag gaattatccg ctcctgtccc gcttctattc
      361 tcagctctgt tttttctatc ggaaaagctt tgttgggaag aacaggattg attaatccgt
      421 caggttgaag gtcaaggata tttacatata agccacggtt tgtattgttc tttgctgcta
      481 tgtaaaattg atcgccatcc tccaattcaa gaatgccccc aaccattttt gagtaatttc
      541 ttgctgtatc agttttgcca tttatgatgg gcaatagtcg gacttctaaa tcgaaagcag
      601 ggtctattat ttccagggtt ttcaaaaatt tgtattggat gtaatgtttc agttgttctt
      661 gtaattctcc tgcgtttttg aatgtgccaa acagcaaacc atttgacgcg ataataatgg
      721 agtcttttac atcgccatgt gaaatcaaca gttcaggggt gcctttaaag ctaactgcag
      781 gcattgctgt caaggcagcc tctaatatgt ttaactgctc attggaaaaa cttcccggtc
      841 tgttttttaa aaacgcaacc accaatggat ccgatttaaa aataggttca gtaataaaaa
      901 cccacccatc cgcttctttt gcgatcacgt ctgcctgttc caattcaacc gtggacgtaa
      961 aggattctga agctgtgact tttcctttcg caagcagtgt ggattcatta ggattgttgg
     1021 tcccgctttt gtgcaaggcc actaatgttc ctgcctccag cccttgaatt tttccgcctt
     1081 tgagggtaag tatattccca tcaaggcttt ttatttctat ataaggtttt tgatacacca
     1141 ttttccccgc aaacaatccc tggtctaaat tatcgccttc tattaccggg ttttgattgg
     1201 gcacttcttc attcatagta gaaagcacgt tggcaaaaaa ggagcgatag gaagtgccgg
     1261 gctgcaaatt gtccattgct ttgcttatgg cataagtaag tgaccccatc gatacattgt
     1321 catcattctt catttcaaaa ttgctttctt ctgcacgggc tgcagaaaaa acgatgtaag
     1381 aggcttttcc ggtagcgttc aaaccttttt ccataaagtc gctgccagga aaggcacgag
     1441 tgttctgctg ttccttaaaa ttgggtggaa ccatagcagg tttgccacct cttacccgct
     1501 ctgttcccct ggtggctgtg cctgagttac aagcatcaag aatgacgatt acatttcctt
     1561 cggggccaat tttgcttcgc aatgcatcta tgaattttcc aaatgcatca tcacggatgt
     1621 agccctctgc aaattcattc agttgtgcga ggtctttagg atacacggca ccgtaaggca
     1681 caattgcttc atcttttcca tcaatttcat cgccattatc atcaagtaat tgcacaccat
     1741 gactcgaaaa atgaatgact acaatatcct ttggctgcac tttcgctaac aattgtgcaa
     1801 aggcattttc aataccattt tttgtggcct cttggtcttg aagtaccgca atgttggctg
     1861 ctggaaatgc ctgtttttcc aaggaagatt ttataaacgg aacatcatta gcactggata
     1921 gctttcccca attcgttttt tcaggcttat agtcgcctat tgctactatt aatgcatgct
     1981 tattttgcgc ctgtaatgaa tggtttgcta ttaaggtgga aatcagaagg ggcaggccaa
     2041 aaagtaattt catctgctga atttggtgta atgcagttaa tgcctcaaat caaggctttg
     2101 taatagcaat caagatagtt cactttgccg tattgttgtt gtaaaagact ttactttgca
     2161 aaaactctgg tttcatgaaa aaattagttt cctttttgat tgccatcgcg gcgtttgttg
     2221 ctgtcaatgc cattgcccag gatcagcagc aggaaaaaca caagcacgaa aaagaagcca
     2281 agcataaata cgagtgcccc atgaagtgcg aacctgccag cgacaagcct ggcaaatgca
     2341 gcaaatgcgg gatggatctg aagaaaataa aggcggaaga cgcgaaggca tggtatgaat
     2401 gtcctatgaa gtgcgagcct gccagtgcca aacccggcaa gtgcggtaag tgcggaatgg
     2461 agctcaaaaa gaaggcctga tcgccgtttt ttgtcctctg acaatggcat cttctcaaaa
     2521 ggaaggtgcc tttgtttttt ctattcaaaa ggctggtaca ttgcacagcc aaaaaatgtt
     2581 gttgtatgcg ccgtgttttc ttgcttttgc tggcagcgtt tgccgtattg aatgttgggg
     2641 cccaaatact ggctggccca atgttggggc cggtttctct gcgtagtgcg ggtgtatggg
     2701 ttgctttgga gaaaccaggt aacaccgccc aggtgaaata ctggacaaag ggtgcggata
     2761 aaagcaaagc cagggatgcc tggcgggcaa atgccagctc caacgaagga gcaccctaca
     2821 acatccagtc gtttacgctt actgatcttg agccgggcac tacctatgaa tacgaagtga
     2881 gtgtcaccga caagaatgtt acgaatgccc gtccggcttc aatttcaaaa ggtgaggtta
     2941 cgacacaaca attgttccag tggcgcagga atgcacccga cttcactttt cttaccggta
     3001 gttgtgccta tttcaatcag ccgcagtacg acaggcccgg gaaaccctat ggcttggaca
     3061 gcagcatttt tgaaaccatg gcaaaggaaa aagccgcctt catgctgtgg ttgggcgaca
     3121 attggtatac ccgtgaagtg gactacagca gcgagtgggg cctgtggtac agggctatgc
     3181 acgaccgaag ccagcccatc ctgaaagatt tttggaaagc catgccccac ctcgccattt
     3241 gggatgatca tgattttggc cccaatgatt atggcaaaag ctatttgctg aagaatacca
     3301 gcagggatgt gttcaatgcc atgtggatga acccctccag cggagaatac aatgaaggca
     3361 tttatacaag gcacacttac agcgacgtcg atttcttcat gctcgacgac cggtggtggc
     3421 gtgattttga ccgcctgccg gatagtgtga atggcaagcc caatgagcag aaacgcatgt
     3481 atggcaaacg ccagttggaa tggttgaaaa atgaactacg ctacagcaag accaatccct
     3541 acatcagttt caggatcatc gttacaggca gccaggtact caatcccggc agtcccttcg
     3601 ataagttgct tgacttcccc gtggagtaca atgaactcat ccatttcatc agggaagaaa
     3661 agatagacgg ggtggtattt ctcactggcg acaggcacca cagcgaagtg atcaaagtgc
     3721 agcatgaagg c
//
LOCUS       DATIQF010000543         5792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_130432,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000543 DATIQF010000000
VERSION     DATIQF010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5792
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130432"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            113..241
                     /locus_tag="VLL95_09000"
     CDS             113..241
                     /locus_tag="VLL95_09000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39039.1"
                     /translation="MNEFLMSTGYLPGAHDTGCPVHLRILQSKPAWANAIKNKGKR"
     gene            349..1215
                     /gene="tatC"
                     /locus_tag="VLL95_09005"
     CDS             349..1215
                     /gene="tatC"
                     /locus_tag="VLL95_09005"
                     /inference="COORDINATES: protein motif:HMM:TIGR00945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HSR39040.1"
                     /translation="MALKLIERRKENTPEGAEMSFVDHLEELRWHIVRAVIAILICAI
                     ACFIYIDELMDVVIFGPIEKGFVTYEWLCKFGHKIGAGDSLCLPVPDVQMQTTTFGGQ
                     FISSITIAFISGLIIAFPYVFWEVWRFIKPALKPTELKHTRGAIFFVSFFFLLGVAFG
                     YFLLAPFTFSFLSNYKIGTHNIIETKPVLNDYIDNLIDITVGAGLAFELPVVSFVLTR
                     IGLITPGFLKEYRKYAYVGLLVIAAVITPSPDWMSQLIVVLPLILLYELSIIISGRVA
                     RQEKRKEEEEWS"
     gene            1288..1737
                     /gene="rpiB"
                     /locus_tag="VLL95_09010"
     CDS             1288..1737
                     /gene="rpiB"
                     /locus_tag="VLL95_09010"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF004051.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HSR39041.1"
                     /translation="MVFDASKPIAIGADHAGVDYKDAAVKWLQEKGFQVKDFGTHGAS
                     SVDYPDFAHPTATAVESGEAAFGILFCGSANGVAITANKHQGIRAGLGWENEVAKLVR
                     LHNDANMICIPARFVALPYALQMLETFMNTAFEGGRHANRVGKIGCS"
     gene            1757..2293
                     /locus_tag="VLL95_09015"
     CDS             1757..2293
                     /locus_tag="VLL95_09015"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR39042.1"
                     /translation="MPYPILETGRLWLQSLLPHMQGEHITWQPATGEALANKQELHFA
                     SKEEAHHFEVGFQQYQKFDLGHWAIIRKQDGLLLGWCGLRLNEEDNSADLGFRLAPAY
                     WRHGYTAEAADACVKFAFTYTGIDCIYARLKTGNAGAAKVLSALGMTKQNDTIAAGSA
                     PGATQAYSIKKEDWLSLQ"
     gene            complement(2496..3026)
                     /locus_tag="VLL95_09020"
     CDS             complement(2496..3026)
                     /locus_tag="VLL95_09020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39043.1"
                     /translation="MNTRTEELYLEAEADIRNSNFHEAFRKYEEILYEEPDYAPAHNS
                     LGWIYKTQFENYQKAEVHFKAAIAADSLYPHPYFHMASILVDLERFEELGEFLDRCLG
                     IRTIDKSWVYYRYGMVSELRGQYADAMEWYRKAMLQTMSNDKLKDYQADMERCNTKLQ
                     LGRQHQPWIRLFGKKK"
     gene            complement(3105..4079)
                     /locus_tag="VLL95_09025"
     CDS             complement(3105..4079)
                     /locus_tag="VLL95_09025"
                     /inference="COORDINATES: protein motif:HMM:NF014027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008612 - peptidyl-lysine modification to
                     peptidyl-hypusine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase family protein"
                     /protein_id="HSR39044.1"
                     /translation="MSKGPISQFITHHYRHFNAAALVDAAKGYETHLLEGGKMMVTLA
                     GAMSTGELGISLAEMIRQDKVQIISCTGANLEEDVMNLVAHSHYKRIPNYRDLTPQEE
                     WDLLENHYNRVTDTCIPEEEAFRRLQKHLHRQWVEAEAKGERYFPHEFLYKTVLSGDL
                     EQYYEIDPKDSWIVAAAQKNIPIVVPGWEDSTTGNIFASYVIKGELKASTVKSGIEYM
                     VWLADWYRQNSGGKGVGFFQIGGGIAGDFPICVVPMMYQDLEWHDVPFWSYFCQISDS
                     TTSYGSYSGAVPNEKITWGKLDIHTPKFIVESDATIVAPLMFAYILGW"
     gene            4301..>5792
                     /locus_tag="VLL95_09030"
     CDS             4301..>5792
                     /locus_tag="VLL95_09030"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR39045.1"
                     /translation="MSLRILQITPYYLPDVVFGGPVFSVSSLCEALVKTGARVTVFTV
                     GYDDAASYPRHTTLNGVEVVYFARNAGSPCQVSWQLWQALEKQAQEFDVVHLHTWWNV
                     LIFRSIHILKKLKVPLVVSPRGMMSDYSFTHRKTWIKKGFQTYAGVKLLRNVSLHATS
                     AAEAAEMSQRCSRDVDDIFVMPNLLGLKPVQVYEALPQQQHGYTIGFLSRLHHKKGIE
                     VLLEAVAQSPIITELVIGGRGDEAYELQLQQQIERLGIQNKVRFVGWVSDADKPQFFR
                     QFDVFVLPSFNENFANVVAEAWAAGKPVIVSTEVGLSEYVETYELGWVCQPTVESVVE
                     NFQQAWVDKPIWRQMGESALRLVRMSFSDEQIVDQYMQMYLQQSSPIAPLVGSAPVSH
                     QPNNDKYVLGINAHHADASAAIFKNGNLVAAIEEERLRRIKHWAGFPSRSIRFCLQEA
                     GISWNELHAIAIGRDPKAKWLTKTTFMLQRPEAVGFAIRGRLSNAAG"
BASE COUNT         1367 a         1442 c         1507 g         1476 t
ORIGIN      
        1 gcagcagcag tttggcagct tccggaaatg gatagagcac caccatccgc tgaccaaagc
       61 ggaatgggtg cggttgttca aaaagcaatt ccggtttacc ggcggctaaa tcgtgaacga
      121 attcctgatg agtaccggct acctgcccgg ggcgcatgac acgggctgcc cggttcattt
      181 gcgcatattg caatcaaagc cggcctgggc caatgccatc aagaacaagg gcaaaaggtg
      241 agggttcttt caattgccag cgcccgggag cattctctgt gggcatctca ttcttgcctt
      301 acatttgcgg ctcgtttttc attgaatatt gaataaaagc aattcgcatt ggcgctgaaa
      361 ctgatagagc ggagaaagga aaatacaccc gaaggtgccg aaatgagttt cgtggaccac
      421 ctggaggaat tgcgctggca tattgtgagg gcggtgatcg ccattctcat ttgcgccatt
      481 gcctgtttca tttacatcga tgagctgatg gatgtggtca ttttcggccc catcgaaaag
      541 ggttttgtga cctacgaatg gctttgcaaa ttcgggcaca agattggtgc cggcgattcc
      601 ctgtgcctgc cggttcccga tgtgcaaatg caaaccacca cttttggcgg ccagttcatc
      661 agcagcatca ccattgcttt catcagtggc cttatcattg ccttccccta tgtgttttgg
      721 gaagtgtggc gctttataaa acctgccctg aaacccaccg aactcaagca tacccgcggc
      781 gctattttct ttgtttcgtt tttctttttg ctgggcgtgg ctttcgggta ttttctgctg
      841 gcgccattta cattcagctt cctgagcaac tacaaaattg gcacccacaa tatcattgaa
      901 accaaaccgg tgctcaatga ttacatcgac aacctgattg acattaccgt tggcgcaggc
      961 ctcgcctttg agttgccggt ggtgagtttt gtgctgaccc gtattggcct tatcacaccg
     1021 ggctttctga aagaataccg caagtatgcc tatgttggtt tgctggtcat tgccgccgtc
     1081 attactccca gccccgactg gatgagccag ttgatcgtgg tgcttccgct gatcctgttg
     1141 tacgaactga gcatcataat ttcgggcagg gtggccaggc aagaaaaacg caaggaagaa
     1201 gaagagtgga gctgatagcc acacgcaacc aaatggccta ccttgtgtag ctaaaactgt
     1261 atttcatcat tttgaaattt tcgatacatg gtatttgatg cctccaaacc catcgccatt
     1321 ggcgccgacc atgccggtgt ggactacaaa gacgctgctg taaaatggtt gcaggaaaag
     1381 ggtttccagg taaaagactt tggtacccat ggcgcctcgt ctgttgacta ccccgacttt
     1441 gcgcatccta ccgcaaccgc tgtagaaagc ggggaagccg catttggcat tctgttctgt
     1501 ggcagcgcca acggcgtagc cattactgcc aacaaacacc agggaatccg tgccgggctg
     1561 ggctgggaaa atgaagtggc caaactggtg cgcctgcaca acgatgccaa catgatctgc
     1621 attcctgccc gctttgtagc cctgccctat gccttgcaaa tgctggaaac ctttatgaat
     1681 acagcgtttg aaggaggaag acacgccaac cgggtgggca aaatcgggtg cagctgatca
     1741 gcttatcgca gctatcatgc cgtatcctat tcttgagacc gggcggcttt ggctccagtc
     1801 attgttgccg cacatgcagg gtgagcacat tacctggcag cctgctaccg gtgaagcact
     1861 ggccaacaaa caggaactcc attttgcgag caaggaagaa gcacaccatt ttgaagtggg
     1921 ctttcagcaa taccaaaaat ttgacctcgg ccattgggcc atcattcgca agcaggatgg
     1981 ccttttgctg ggttggtgtg gcctcaggtt gaacgaggag gacaattcgg ccgatcttgg
     2041 tttcaggctg gcacctgcct attggcgaca cggctacacg gccgaagcgg ccgatgcttg
     2101 cgtaaaattt gcatttacct acaccggcat cgattgtata tacgcccggt tgaaaacagg
     2161 aaatgccggc gcagccaaag tgctttccgc actggggatg acaaaacaaa atgacactat
     2221 cgctgccggt agtgcacccg gcgcaacgca agcgtattcc ataaaaaaag aagattggct
     2281 cagcttacaa tagcagcaat tccgtagatg gcggccagta acagaacgaa caaaatgaag
     2341 agcacagtta ctggcttggc agaagaattc atacagcagt gtttatcaaa tctattttct
     2401 attggtaagc aaatgcagtg ccgagttttt cacggcatgt gaatagtgtt tgaaaactgt
     2461 ggagaaagca gcaacgaaca cagattgctg acacgttact tttttttgcc aaacaagcga
     2521 atccatggct ggtgctgcct tccaagctgg agttttgtat tacagcgttc catatcggcc
     2581 tggtagtctt tcagcttgtc gttgctcatg gtttgcagca tggcttttcg gtaccactcc
     2641 atggcatcag catattgccc ccttagttcg gacaccattc cataccggta gtacacccag
     2701 cttttgtcaa tggtacggat gcccaggcag cggtcgagaa attcacccag ttcttcaaac
     2761 cgctccaggt ccaccaaaat gctggccata tgaaagtagg gatgcgggta caacgaatcg
     2821 gcagcaatcg ctgctttgaa atgcacttcg gctttctggt aattctcgaa ttgcgttttg
     2881 tagatccaac ccagtgaatt gtgggcaggg gcatagtcgg gctcttcgta caaaatttct
     2941 tcgtacttgc gaaaagcctc atggaaattg gagtttctta tgtcggcctc ggcctcgagg
     3001 tataattctt cagttctcgt attcataggg tagcgttcaa gatttggaaa aaaaatcctt
     3061 ccgtcgggaa ggattatcat tatagatgct tccaatgctg ttttttacca acccagtatg
     3121 taggcaaaca tgagcggagc cacaatggtg gcatcgcttt ccacaatgaa cttaggtgta
     3181 tggatgtcga gcttgcccca ggtgatcttt tcattgggta ctgcaccgct gtacgatcca
     3241 tatgaagtag tactgtcgct gatctggcag aaatagctcc agaaaggaac atcatgccat
     3301 tccaggtcct ggtacatcat gggcactacg caaatgggga agtcgccggc aatgcctcca
     3361 ccaatctgga agaaaccaac gcctttgcca ccgctgttct ggcggtacca gtcggccagc
     3421 cataccatgt attcaatacc gcttttcacg gtgctggctt tcagttcgcc tttgatcacg
     3481 tagctggcaa agatgttgcc ggtggtgctg tcttcccaac cgggtaccac tatgggaata
     3541 ttcttttggg cagcggctac aatccagctg tctttggggt caatttcata atactgctcc
     3601 aggtcgccgc tgagcaccgt tttgtacaaa aactcgtggg ggaaataacg ttcgcctttg
     3661 gcttctgctt ccacccactg gcggtgcagg tgcttctgca accggcggaa tgcttcttct
     3721 tcgggtatgc aggtatcggt tacgcggttg taatggtttt ccagcaggtc ccattcttcc
     3781 tgcggtgtca ggtcgcggta gttgggaata cgcttgtaat ggctgtgagc caccaggttc
     3841 atcacgtctt cttccaggtt ggcgccggtg caactgatga tctgcacttt gtcctggcgt
     3901 atcatttcgg ccaggctgat gcccagttcg ccggtgctca tggcgcctgc cagggtgacc
     3961 atcattttgc ccccttccag caggtgggtt tcatatcctt tggctgcatc taccagggca
     4021 gcggcattga agtgtcgata gtgatgggta ataaactggc tgattggtcc tttgctcata
     4081 actccattgt tttttggagc ggcaaaaata gctgattatg cagggaggcc atgtgaaatt
     4141 tgaagaatga gtgatacaaa gacacaaaag ttgcggcatc aatcacagga aacgtggttt
     4201 caaaatccaa caataaacat gttgcgcata aaatatgcaa gatgtatgcc ccgcatttgg
     4261 caattttacc ggcaaagcac gcattacacc aaactgttct atgagcctgc gcatcctgca
     4321 aatcactcct tactacttac ccgacgttgt ttttggcggt cctgtgttct cggtttcctc
     4381 actctgcgaa gcgctggtga aaaccggtgc ccgggttact gttttcaccg taggctatga
     4441 tgatgcggcg tcctacccac gccacaccac tttgaacggc gtagaggtgg tgtactttgc
     4501 ccgcaatgca ggcagcccct gccaggtatc gtggcaactg tggcaggccc tggaaaagca
     4561 ggcgcaggag tttgatgtgg tgcacctcca tacctggtgg aacgttctca tctttcgttc
     4621 cattcatatc ctgaaaaaac tgaaggtacc cctcgtggtt tctcccaggg gcatgatgag
     4681 cgattacagt tttacccatc gcaaaacctg gatcaaaaaa ggctttcaga cctatgccgg
     4741 cgtgaagctt ttgcgcaatg tgtcgctgca tgcaaccagt gccgctgaag ccgctgaaat
     4801 gtcgcagcga tgcagccgcg atgtggacga catttttgtg atgcccaatc tgctgggctt
     4861 gaaacctgtg caggtatacg aagcgttgcc acagcagcaa catggataca ccattggatt
     4921 cctgtcgcgg ctgcatcaca aaaaaggcat cgaagtattg ctggaggcgg tagcacaatc
     4981 tcccatcatc accgaattgg tgataggtgg ccggggcgat gaagcctatg aattgcaact
     5041 gcagcagcag attgaaagat tgggcatcca aaacaaagtg cgttttgtgg gctgggtgtc
     5101 ggatgctgac aagccgcagt tctttcgcca gtttgatgtg tttgtgttgc cttccttcaa
     5161 tgaaaacttc gccaatgttg tggccgaagc ctgggcagct gggaagccag tgatcgtaag
     5221 tacagaagtg ggcctgagcg aatatgtaga gacctatgaa ctgggctggg tttgccagcc
     5281 aacagtagaa agcgtggtgg agaatttcca gcaggcctgg gttgataaac ctatttggcg
     5341 acaaatgggt gaatcggccc tgcgactggt gcgcatgagt ttcagcgatg aacagattgt
     5401 agaccagtac atgcaaatgt acctgcagca gtcttcgccc attgcgccgc tggtgggcag
     5461 tgcacctgtc agtcatcaac cgaacaacga caaatatgtg ctgggcatca atgcccacca
     5521 tgccgatgca tctgctgcaa tttttaagaa cggcaacctg gtggccgcta ttgaagaaga
     5581 gcgtttgcgt cgcatcaagc actgggcagg ttttccttcc aggtccatcc ggttttgcct
     5641 gcaggaagcc ggtatttcct ggaatgaatt gcatgccatt gccattggca gggatcccaa
     5701 agccaaatgg ctgaccaaga ccactttcat gctgcagcgg cccgaggccg ttggttttgc
     5761 cattcgcggc cgtttgagca atgccgccgg tg
//
LOCUS       DATIQF010000544         1948 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_84733, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000544 DATIQF010000000
VERSION     DATIQF010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1948)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1948
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84733"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..577
                     /gene="idi"
                     /locus_tag="VLL95_09035"
     CDS             <1..577
                     /gene="idi"
                     /locus_tag="VLL95_09035"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: protein motif:HMM:NF002995.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004452 - isopentenyl-diphosphate
                     delta-isomerase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HSR39046.1"
                     /translation="NPFIQNQILFVCSMNISATEVVLVNEQDEPVGTMEKMEAHRQPH
                     LHRAFSVFLFDSNNRILLQQRALSKYHSPGLWTNTCCSHPFPGEEVADAASRRLIEEM
                     GISTPLQKAFHFTYQAEFDNGLFEHEFDHVFVGHFEGDINANPDEVASFCYKSIEQIK
                     ADLDTSAHKYTPWFKIALPLVEKYIAKQAVV"
     gene            631..>1948
                     /gene="crtD"
                     /locus_tag="VLL95_09040"
     CDS             631..>1948
                     /gene="crtD"
                     /locus_tag="VLL95_09040"
                     /EC_number="1.3.99.27"
                     /inference="COORDINATES: protein motif:HMM:NF042421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0016117 - carotenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-hydroxycarotenoid 3,4-desaturase CrtD"
                     /protein_id="HSR39047.1"
                     /translation="MGHSRKAVVIGAGVAGLAASVRLAIQGWEVDVYERNAYPGGKLS
                     WFEQDGYSFDAGPSLFTQPSHLEELFAEAGVPIASHFQYQQAAESCRYFFANGKQMVD
                     WADKQALADEMAAILGEDPQSVLRYLQESSATYEHIGQLFVKQSLHKWRDFSWKQVGK
                     ALAHTRPSYLFSTLNKHNAAHFRSAETVQLFNRYATYNGSNPYKAPAMLSLIPHLEMN
                     EGTFYPKGGMISITRALHELAELKGVRFHFNAGVERIIRHDNQAKGVVINGENLMTDV
                     VVSNCDAYFTYLHLLKDEHAARKLLKQERSSSALIFYWGIGKSFEQLGLHNIFFSHHY
                     QKEFDHLFTRKTFFEDPTVYINITSKMETGQAPEGKENWFVMINAPANHGQPWQDWIP
                     AARQRIIDKLSQRLQTDISSLIETESVLDPVTIEQRTTSYMGSLYGT"
BASE COUNT          504 a          477 c          480 g          487 t
ORIGIN      
        1 gaatcccttc attcaaaatc aaattctgtt tgtttgcagc atgaatattt ctgcaaccga
       61 ggtggtgttg gtaaatgagc aggatgagcc tgttggtacc atggaaaaaa tggaagctca
      121 tcgccagccc catttgcacc gtgctttcag tgttttcctg ttcgacagca acaaccggat
      181 cttacttcag cagcgtgccc tttcaaaata ccacagcccc ggtttgtgga ccaacacctg
      241 ttgcagccat ccttttccgg gcgaagaggt ggcagatgct gcttcccgaa gactgatcga
      301 agaaatgggt atttccactc cgcttcaaaa ggcttttcac ttcacttacc aggccgaatt
      361 tgacaatgga ctgtttgagc atgaatttga ccatgttttt gtcggtcatt ttgaagggga
      421 catcaatgct aaccctgacg aagtggcgtc cttttgctac aaaagcatcg agcagataaa
      481 ggccgacctg gatacatcgg ctcataaata cacgccctgg ttcaagattg cactgccact
      541 ggttgaaaag tacatcgcga agcaggcagt tgtgtaaatt gatcccgtat ttcgcccttc
      601 ctgccgggca acgcattatt gtcaagaaaa atgggccact cacgaaaagc agttgtaatt
      661 ggagccggtg tagccgggtt ggcagcatcc gtaaggctgg ccatacaggg ctgggaggta
      721 gatgtgtacg agcgaaatgc ctacccggga ggaaagctca gctggttcga acaggatggt
      781 tacagttttg atgccggccc ttctttgttc acgcagcctt ctcatttgga agaattgttt
      841 gctgaagcag gtgttcccat cgcatcgcat tttcaatacc agcaggccgc cgaaagctgc
      901 cgctatttct tcgccaatgg caaacagatg gttgactggg ccgataagca ggcacttgcc
      961 gatgaaatgg ccgctatttt aggggaagat ccccagtctg tgttgcgtta cctgcaagag
     1021 tcatctgcta cctatgaaca cattggccaa ttgtttgtga aacagtcgct gcacaagtgg
     1081 cgtgattttt catggaagca ggtaggcaag gctttggcgc ataccaggcc ctcttacctc
     1141 ttcagtacat tgaataagca caatgccgcc cactttcgtt cggcggaaac ggtacaactt
     1201 ttcaatcggt atgccactta caatggcagc aatccttaca aggctccggc catgctcagc
     1261 ctcattccgc atttggaaat gaatgaagga actttctatc caaagggggg tatgatcagc
     1321 attacccgtg ccctgcacga actggccgaa ttgaaaggtg tgcgttttca cttcaacgct
     1381 ggtgtagaac ggatcattcg ccacgataac caggcaaaag gtgtggtgat aaatggcgaa
     1441 aacctcatga ccgatgtggt ggtgagtaat tgcgatgcct attttaccta tctgcacttg
     1501 ctgaaagatg aacatgcggc caggaaactg ctgaagcagg agcgcagcag cagcgccctg
     1561 atattttatt ggggcatcgg caaatcattt gaacaacttg gcctgcacaa cattttcttc
     1621 agccatcatt accaaaagga atttgatcac ctgtttaccc ggaagacctt ttttgaagac
     1681 ccaactgttt acatcaacat cacttcaaaa atggaaaccg gtcaggctcc tgaaggaaag
     1741 gaaaactggt ttgtgatgat taatgccccg gccaaccatg gacagccgtg gcaggattgg
     1801 attccagcgg cacggcagcg gatcatcgac aaactgagcc aacgcctgca aacggatatt
     1861 tcttcgctca ttgaaacgga gtccgtgctc gatccggtga ccatagaaca gcgtaccacc
     1921 tcctatatgg gcagtttgta cggcacca
//
LOCUS       DATIQF010000545         7749 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_221596,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000545 DATIQF010000000
VERSION     DATIQF010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7749
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221596"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..790)
                     /locus_tag="VLL95_09045"
     CDS             complement(<1..790)
                     /locus_tag="VLL95_09045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39048.1"
                     /translation="MLLLIGASAFAQTQVPTGRWLFTLSRPGGQPVYVHADLRIQGDS
                     GYLEFLNDTERMAVPPFHLGADSIRFAMPLFETRFSLSRAADGHLAGTLSKGVSTGYQ
                     VWQVEAKHGSGPRIPEAAGEPLVNLSGRWALEFQRPDGSWRPAVAELKQEGARLTGTI
                     INPSGDYRFLEGAVWGRQFYLTAFDGAHIYALRADVPGDSIIANGIFFSGTAPGDRFR
                     ARRDEKAQLPALAPVAEMKPGEQYLRFRFPDLDSNMVSLQDPRFR"
     gene            complement(878..1216)
                     /locus_tag="VLL95_09050"
     CDS             complement(878..1216)
                     /locus_tag="VLL95_09050"
                     /inference="COORDINATES: protein motif:HMM:NF039201.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HSR39049.1"
                     /translation="MKKVVATILLTTCITFAMAQKGTVGSLSNNDKQVAFFPNPATTF
                     INFEFKNPVEKGSVLEVYSFLGRRMANINVISRRMTVTLNEYVTGIYVFQLRDAAGRV
                     VETNKFQVAK"
     gene            complement(1348..1815)
                     /locus_tag="VLL95_09055"
     CDS             complement(1348..1815)
                     /locus_tag="VLL95_09055"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HSR39050.1"
                     /translation="MAIEIGQAAPDFTLVDSDMKMGSLSEYRGKNVLLLFFPLAFTSV
                     CTAELCSVRDELSTYQSLDADVLAVSVDTLFTLKKFKEEQGLRFRLLSDFNKDAARAY
                     GALYEDYFGMRGVAKRAAFVIDKEGRIAYAEVLENDSEWPDFEAIKQKLAGLA"
     gene            1938..2549
                     /gene="ruvA"
                     /locus_tag="VLL95_09060"
     CDS             1938..2549
                     /gene="ruvA"
                     /locus_tag="VLL95_09060"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00084.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HSR39051.1"
                     /translation="MNTYFSRMIAQLSGKFLHKTPTRVVVDAQGVGYDVQISLNTYTD
                     IQALESGTLLTYLKVSEDAMTLFGFSQPAEKELFVKLLGVSGVGATTARMMLSHLKPH
                     ELAQAIVTGQVRTLESIKGIGKKTAERIVLELRDKLGEIKASQQPIFAGEYHNTAAMD
                     ALDALVALGINKAVAEQALKKVITAAGEKPSVEALIKMALQSM"
     gene            2693..>7749
                     /gene="sprA"
                     /locus_tag="VLL95_09065"
     CDS             2693..>7749
                     /gene="sprA"
                     /locus_tag="VLL95_09065"
                     /inference="COORDINATES: protein motif:HMM:TIGR04189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein SprA"
                     /protein_id="HSR39052.1"
                     /translation="MNATAGPFRFFTPPQTDTTTGKKDSLRFPISDRRGDPYSGYRRN
                     PFDLLDTSFLKQSVEYDPVTKQYYITEKIGNSYYRKPTAISYEEFLKIKGQQQERENF
                     IRRSNTNLALNRKLVQPKLRMYDDLFNRVFGNGKILIQPNGNVDLTMGYQGQNVENPT
                     LPERARKYGALDFDMNAQFNMDASIGDKMKLPINFNTLATFDFENQLKLDYKGKPDEI
                     IKSIEAGNTSFATKGTLIQGAQALFGLKTQLQFGKLLVTTAIANMQSQRQTSKFEGGA
                     ALTNFSKKLDDYDENRHFLLAQYFRKQYNKVMSTLPFVQSQVQIMRLEVWLTNRIGQT
                     TDSRPVIAFMDLGERFPYNSNIPQIPGDSLPQNGANGLYGLINKDPFRSPNDINALLQ
                     GIGLRPVQDYEKTFARKLVEGVDYIFNRQAGFISINQFLQPDEVLGVAFQYTYNGRVY
                     QVGEFAQDVALDTTQGKQKNLFVKMLKATSQRPQLPIWDLMMKNVYSLDLFSVQREGF
                     KVNITYEEPSGGEKRMLPEGDDPGRPLLRILQLDRLNNRNDPQPDGVFDYVDSFTIQP
                     QQGRIIFPVLEPFGSDLRRNAFANQPQSVYERYIFQPLYDTIKVIAQQNYPSLNRFYI
                     RGQAKGSGASDEIYLNAINIPPGSVNVTAGGQILKENIDYTIDYTSGKLTIINQAIKS
                     AGIPVNVSLENNAGFGIQNRGFFAMRLDYLANKNLSLGGTMMRLGERPFFTKMNYGED
                     PIRNRMYGVDFNYKNDWKQMSRWLDKLPFYSTNAPSSIQAYGEATYFDPNHAPQIGKG
                     DQGLIYLDDFEGTRANIDLRFPFVGWVHATTPQDAGFPEANSNNDIIYNQNRSKLSWY
                     QIEPVLQDSRNPNNPIRDRNLLSDPRVRQVSNQELFPQRTPLPGTNQLITFDMTFYPK
                     ERGSYNFDARPGLINPDGTFRNPKQRWGGLMRAIDQTDFETANIEFVEFWLQDPFMKT
                     AQFPNGYTNPAGGQLYINLGNISEDVLRDGRRFYENGLPSPTQPNLAVDSTTTWGKEP
                     VIPIQITQAFSNDPGDREYQDVGFDGINDDDERRKRQQDFLNPMQSILGVNNPAFQKL
                     VSDPSNDNFINYRDDRWDAGNAGILQRYKSFNLNQGNSPINTQNDLVVASTLYPDNED
                     LNRDNTVNESEEYFEYKIDITPAALQVGKNFITDKRLVNIRYENGTSGTETWFQFRIP
                     VARYTRKVGDIPDFKSIRFMRMYMTGWEDSATLRFARLDLVRNNWRQFAFELSRDGTA
                     TSTANNTFTTLNTLAVNIEENDRRTPIPYRIPPGIERVQQLANGGVNILQNEQALSMQ
                     VRNLISGDARGVFKPLSNDLRMYRKVNMFIHAEELVPTDPAYSPLEDTSLYATVRIGQ
                     DILSNYYEVKIPLKITVPGGPNIPTDSIWPEVNNLDFDVQELIDLKDRRNRAPGSSPT
                     VYYSEKIGKREFGIFGNPNLGEVRSIYVGVENPFRPDGPNLSAEVWINELRLSNINQD
                     GAWAAIGRADMQLADLGTLSISGSHRTTGFGSIEQRINERARETTTKFDASLQIDAGK
                     LVPQEARLSIPVYASVSQVLITPEFDPYDKDVKMKDRLRNCDNCDSVRQVAREQQTTQ
                     TLNFSNVRMFPKPGAPNRFYNPSNFDFTYNFLRQRVSSPIITQDLIKRHRIVFGYQWA
                     AQPKSWEPFKNKIKSQSP"
BASE COUNT         2090 a         2227 c         1832 g         1600 t
ORIGIN      
        1 tgcgaaaccg gggatcttgc aggctgacca tgttgctgtc caaatcggga aagcggaaac
       61 ggaggtactg ctccccgggc ttcatttccg ctacaggggc caatgccggc aattgggctt
      121 tctcatcccg cctggccctg aatcggtcgc ccggtgccgt gccggaaaag aagatgccgt
      181 tggcaatgat actgtcgccg ggaacatcgg ccctcagcgc ataaatatgc gcaccgtcaa
      241 aagctgtcag gtagaactgg cgcccccaaa ctgccccttc caaaaaacgg taatcgccgc
      301 tggggttgat gatggtgccg gtgagcctgg ctccctcttg tttcaactct gccactgcgg
      361 gtcgccaact gccatccggc cgctggaact ccagcgccca acgcccggac aggttcacca
      421 gcggttcgcc tgccgcctca ggaatgcgtg ggcccgaacc atgtttcgct tccacctgcc
      481 atacctgata gcccgttgaa acccctttcg acagggtgcc tgccaaatgc ccgtctgctg
      541 cccggcttaa tgaaaaccgg gtttcaaaca aaggcatggc gaatcgtata gaatcagcac
      601 caaggtggaa aggaggtact gccatccgct cagtatcgtt cagaaactcg aggtaccccg
      661 agtcaccctg tattcgcagg tcggcatgca cataaaccgg ctggccgccc ggtcggctga
      721 gcgtgaacaa ccaacggccg gttggcacct gggtttgtgc aaaagctgat gctcctatga
      781 gcaataacaa tgacagaaag aaatgttggc ggaaaaaaaa catgccgcaa atctgcggca
      841 tccatggtca aaaaaaatca gaaaaaagcg taatggatta tttggctacc tggaatttgt
      901 tggtttccac cacacggccg gccgcatccc taagctggaa tacatagata ccagtcacat
      961 attcattcaa agtaaccgtc atccggcggg agattacatt aatattggcc atccggcgcc
     1021 ccaggaaaga gtagacttcc aggacagaac ccttttcaac cgggttcttg aattcaaagt
     1081 tgatgaatgt tgtggcgggg ttgggaaaga acgctacttg cttgtcattg ttcgacaatg
     1141 aacccaccgt ccccttttgc gccatagcaa aagtgataca ggtggttagt aagatggtag
     1201 caacgacttt cttcacaatt tcgtgtattg ctctccgaaa ttaggcgctt tttgtggaaa
     1261 aattgagcat ttttctgaaa aagttgagaa tttccaaggc aaccattcgc aagttgcaga
     1321 atttcaatgt tttaacattc aagataatca ggctaaaccg gccagttttt gcttgatggc
     1381 ctcaaaatcc ggccactcgc tgtcattttc caatacttcc gcataggcga tccgaccctc
     1441 cttgtctatt acaaatgcag cccttttggc cacaccccgc attccaaaat agtcctcata
     1501 cagggctccg taggccctgg cagcatcctt gttgaaatcg ctcagcagcc tgaaacgcaa
     1561 cccctgctcc tccttgaact tcttcagggt aaacaaggta tccacgctta cagccagcac
     1621 atcggcatcc aatgattggt aggtggacaa ctcatcacga accgaacaca actcggcggt
     1681 gcaaacactc gtaaaagcca ggggaaagaa aagaaggagc acattcttgc cgcggtattc
     1741 actcagcgag cccattttca tatccgaatc caccagcgta aagtcggggg cagcctgccc
     1801 gatttctatt gccattgcag ttgatttttg tttcaggaat aacattgaat aacaactgtt
     1861 tacaaaaaag gttcccaaac cacgaggctc ctgcccgcaa aggtccctga cacttttttg
     1921 cgggaggcgg tttttccatg aatacctatt ttagccgcat gattgcccaa ctatccggaa
     1981 agttcctgca taagaccccc acaagggtgg tggtggatgc acaaggcgtg ggatacgatg
     2041 tacagataag cctcaatacc tacacggata tccaggccct tgaatcaggc acgctcctta
     2101 cctacctgaa agtgtctgaa gacgccatga ccctgtttgg ttttagccaa ccggctgaaa
     2161 aagagctgtt tgtaaagctc ctgggggtat cgggagtggg ggccactacc gcccggatga
     2221 tgctgagcca cctgaagccg cacgaattgg cccaggccat tgtgaccggg caggtgcgga
     2281 ccttggagag catcaagggc atcggcaaaa agactgccga acgtatcgtg ttggaactca
     2341 gggacaaact gggcgaaata aaagccagcc aacagcccat ttttgctggc gaataccaca
     2401 ataccgcggc catggatgcg ttagatgctt tggtagcgct gggcattaat aaagcagtgg
     2461 ctgaacaagc cttgaaaaag gtgataaccg cagccggcga aaagccctct gtggaagcac
     2521 tgataaaaat ggcgctgcaa tcaatgtgat aaatccttaa ttttcaaact cttaaaccag
     2581 tgctcgccta tcgatagcag atctacgcta ccaaactaac tcagttttgt tttttagggc
     2641 gctccgtttt gtactgacca cctgtttacc tgttggcttg ctattgcttc atttgaacgc
     2701 aacggcaggt cccttccgtt tttttacgcc cccacaaacc gataccacca caggaaaaaa
     2761 agacagcctt cgtttcccca tctccgaccg ccggggcgat ccttactccg gctatcgccg
     2821 caacccattc gatttgctgg ataccagttt cctgaagcag tcggtggaat atgacccggt
     2881 gacaaagcag tattacatca ccgaaaaaat cggcaactcc tactaccgca agccaacggc
     2941 catttcctat gaagaatttt tgaaaataaa aggccagcaa caggaacgcg agaacttcat
     3001 ccgccgctcc aataccaacc tggcactcaa ccgcaaactg gtacagccca agttgcgcat
     3061 gtacgatgac ctgttcaacc gggtttttgg caatggcaaa atactcattc agcccaatgg
     3121 caacgtggac ctcaccatgg gctaccaggg ccagaacgta gaaaacccta ccctgcccga
     3181 acgtgcccgt aaatacggcg ccctggattt tgacatgaat gcgcagttca acatggatgc
     3241 cagtattggc gacaaaatga aactgcccat caacttcaac accctcgcca cctttgattt
     3301 tgaaaaccag ttgaagctcg attacaaagg caagccggac gagatcatca agagcattga
     3361 agcaggtaat accagctttg ccaccaaggg taccctgata caaggtgccc aggcgctctt
     3421 tggcctgaaa acccagttgc agtttggcaa actcctcgtg accacggcca tcgccaatat
     3481 gcagagccag cgacaaactt cgaagtttga aggaggcgct gccctcacca acttcagcaa
     3541 aaaactggat gactacgacg agaacaggca cttcctgctg gcgcaatatt tccgcaaaca
     3601 gtacaacaaa gtgatgagca ccctgccctt tgtgcaatcg caggtgcaga tcatgcgcct
     3661 tgaagtgtgg ctcaccaacc ggatagggca aaccacagac agccgccccg tcatcgcatt
     3721 tatggatttg ggagagcgtt ttccctacaa cagcaatatt ccgcaaatac ccggtgacag
     3781 tttgccccaa aacggtgcca acggactgta tggattgatc aacaaagatc ccttccgatc
     3841 gcccaacgac atcaatgcgc ttttgcaagg cataggtcta agaccggtgc aggactatga
     3901 aaaaactttt gcccgcaaac tggtcgaagg tgtcgactat attttcaacc ggcaggcagg
     3961 tttcatcagc atcaaccagt tcctgcaacc cgacgaagtg ctgggcgtgg cattccaata
     4021 cacctataac ggccgtgttt accaggtagg ggaatttgcg caggacgtgg cgctggacac
     4081 cacacaaggc aaacagaaaa acctgtttgt gaaaatgctg aaagccacca gtcagcgtcc
     4141 ccagttgccc atctgggacc tgatgatgaa aaacgtatac tccctcgatc tgttcagcgt
     4201 gcaacgcgaa gggtttaaag taaacatcac ctacgaggaa cccagcggcg gtgaaaagcg
     4261 aatgctgccg gaaggcgatg atcccgggcg ccccctgctg cgcatcctgc aactggaccg
     4321 cctgaacaac cgcaacgacc cgcaaccgga tggggttttc gactatgtgg acagtttcac
     4381 catacagcca caacaaggac gcatcatctt cccggtattg gaacccttcg gcagcgacct
     4441 tcgtcgcaac gcctttgcca accaaccgca aagcgtgtat gaacggtaca tctttcaacc
     4501 cctgtacgat accatcaagg ttatcgcaca gcagaactat ccttcgctca accgattcta
     4561 catacgaggc caggccaaag gatcgggtgc cagtgacgag atctatctga atgccattaa
     4621 tattccgccg ggttcggtga acgttaccgc tggcggacaa atactcaaag agaacattga
     4681 ctataccatc gattatactt ccggcaaact caccatcatc aaccaggcca tcaagagtgc
     4741 cggcatacct gtaaacgtaa gcctggaaaa caatgctgga tttggcatcc agaacagggg
     4801 cttttttgcc atgcgactcg attacctggc caacaagaac ctgagccttg gtggtaccat
     4861 gatgcgcctt ggcgaaagac cgtttttcac caaaatgaat tacggcgagg accccatccg
     4921 caaccgcatg tatggtgtcg acttcaacta caagaatgac tggaagcaaa tgagccgctg
     4981 gctcgacaag ctgcctttct acagcacgaa cgcccccagc agcatacagg cctatggcga
     5041 agcgacctat ttcgatccca accatgcgcc gcagatcggg aagggtgacc agggacttat
     5101 ctacctcgat gactttgaag gcacccgtgc caatatcgat ctgcgtttcc cctttgttgg
     5161 ctgggtgcat gccaccacgc cgcaggatgc aggctttccg gaagcgaaca gcaacaacga
     5221 catcatttac aaccaaaacc gctcaaagct gagctggtac cagattgaac cggtattgca
     5281 ggacagccgc aaccccaaca atcccatccg cgatcgcaac ctgctcagcg atcccagggt
     5341 acgccaggtg agcaaccagg aattgtttcc gcaaagaaca cccctgcccg gtaccaacca
     5401 actcatcacc tttgacatga ccttctaccc caaggaaagg ggttcgtaca acttcgatgc
     5461 caggcccgga ctcatcaacc ccgacggcac attccgcaat cccaaacaac gctggggcgg
     5521 cttgatgcgt gccatcgacc aaacggattt tgaaactgcc aacattgaat ttgtggaatt
     5581 ctggctgcag gatccattca tgaaaacggc acagttcccc aacgggtata ccaacccggc
     5641 cggcggacaa ctgtacatca accttggtaa tatttcggaa gacgtattgc gtgacggacg
     5701 tcgcttttac gaaaatggcc tgccctcccc tacgcagccc aacctcgcag tcgattccac
     5761 caccacctgg ggcaaagagc cggtcattcc catccagatc acacaagcgt tcagcaatga
     5821 ccccggtgat cgtgaatacc aggacgtagg cttcgatggc atcaatgacg atgatgaaag
     5881 aaggaagcgc cagcaggatt tcctcaaccc catgcaatcc atccttggcg ttaacaaccc
     5941 ggccttccaa aaactggtat ctgaccccag caacgacaac tttatcaact accgcgacga
     6001 ccggtgggat gccggcaacg caggcatttt gcaacgctac aaatccttca acctcaacca
     6061 gggcaactca cccatcaaca cccaaaacga cctggtggtg gccagcacac tgtaccccga
     6121 caacgaagac ctgaaccgcg acaacaccgt gaatgaatcg gaagaatatt tcgaatacaa
     6181 aattgacatt acgcctgcag cgctccaggt gggtaagaac ttcatcaccg acaaacgcct
     6241 cgtgaacatc cggtacgaaa acggtaccag tggcaccgaa acatggttcc agttccgcat
     6301 acccgtggca aggtacaccc gcaaagtggg cgacattcct gatttcaaat ccatccgctt
     6361 tatgcgcatg tacatgaccg ggtgggaaga cagcgcaacc ctgcgctttg cacgcctgga
     6421 tttggtgcgc aacaactggc gccagtttgc ctttgaactc agccgcgatg gtacggccac
     6481 cagcactgcc aacaacacat ttaccaccct caataccctg gcggtaaaca ttgaagaaaa
     6541 cgaccgtcgt acacccatcc cctaccgcat tccacccggc attgagcggg tgcagcaact
     6601 ggccaatggc ggtgtgaaca tcctgcaaaa cgaacaggcg ctgagcatgc aggttcggaa
     6661 cctgatttca ggcgatgccc ggggtgtttt caaaccattg agcaatgacc tgcggatgta
     6721 ccgcaaggtg aacatgttca tacacgccga agaactggtg cccactgatc ctgcttacag
     6781 cccgctggaa gataccagcc tgtatgccac cgtacgcatt ggacaagaca tcctgagcaa
     6841 ctattacgag gtcaagatcc cgttgaaaat aaccgtaccc ggcggaccca acatccctac
     6901 cgacagcatt tggcccgaag tgaacaacct tgatttcgat gtgcaggaat tgatcgatct
     6961 gaaagaccgg cgcaacaggg cacccggttc ttcccccacc gtttattatt cagagaaaat
     7021 tggcaaacgg gagtttggca tatttggcaa ccccaacctc ggcgaagtac gcagcattta
     7081 tgtgggcgta gaaaatccat tcagacccga tggccccaac ctcagcgccg aagtctggat
     7141 caatgaactg cgcctcagca acatcaacca ggatggcgcc tgggccgcca taggcagagc
     7201 cgacatgcaa ttggccgacc tgggaacgct cagcatatcg ggcagtcacc gaactacggg
     7261 tttcggaagc attgaacaac gcattaatga aagggcccgt gaaaccacca ccaagttcga
     7321 cgccagcctg cagattgatg ccggcaagct ggtgccccag gaggcacgcc tgagcatacc
     7381 ggtttatgcc agcgtgagcc aggtactcat cacccccgaa ttcgacccct acgacaaaga
     7441 tgtgaagatg aaggacaggc tcaggaattg cgacaattgc gattccgtga ggcaggtagc
     7501 acgggaacaa caaaccacgc aaacgctcaa cttcagcaat gtgcgcatgt ttcccaaacc
     7561 cggtgctccc aaccggtttt acaaccccag caacttcgac tttacctaca acttcctgcg
     7621 gcaaagggtc agttcgccca tcattaccca ggacctcatc aagcgccatc gcatcgtgtt
     7681 tggctaccag tgggccgcac aacccaaatc ctgggagcct ttcaaaaaca agatcaagtc
     7741 acaatcgcc
//
LOCUS       DATIQF010000546         2655 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_267393,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000546 DATIQF010000000
VERSION     DATIQF010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2655
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267393"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..448)
                     /locus_tag="VLL95_09070"
     CDS             complement(<1..448)
                     /locus_tag="VLL95_09070"
                     /inference="COORDINATES: protein motif:HMM:NF024952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2'-5' RNA ligase family protein"
                     /protein_id="HSR39053.1"
                     /translation="MPEGFSLYYMAIVCPDAIETTVKQYKDYMFEQYGSKAASKSPAH
                     ITIVPPFRAENEIEANLVDFASTFSIGILPFNIALSGYGNFGERVLYVDVLPNEHLAQ
                     LEKDCMQEFGEQFPSIIFGMKPEFNPHVTIATRDIPEGKLHEAKAYF"
     gene            complement(563..2053)
                     /gene="pyk"
                     /locus_tag="VLL95_09075"
     CDS             complement(563..2053)
                     /gene="pyk"
                     /locus_tag="VLL95_09075"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: protein motif:HMM:NF004978.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HSR39054.1"
                     /translation="MSRNSEKYAYRGMDKQAGIEHNYKRTKIVATVGPASNSYETMLN
                     LARAGVNVFRLNFSHGSHEDKLDIINNIRKINEEQPFNIAILGDLQGPKLRVGEIENN
                     ALPVAPGDVLTFTNEKCVGTLEKIYVSYPNLAGDVKLGNKILIDDGKLEVVVKSIERN
                     GDVKVEVTIGGTLSSKKGINLPDTKISLPALTDKDLADLDFIIDQKLDWVALSFVRSV
                     KDLVILRSKLEEKKSKTKIIAKIEKPEAVTNIRDIILESDAIMIARGDLGVEMPVEKV
                     PMIQKDLIRKCMHRAKPVIVATQMMESMIDRVKPNRSEITDVANAVLEGADAVMLSGE
                     TATGEHPVLVVETMTKIIREIENTAYQYDREELLKPQPHSPSFLSDAICYNACKIALD
                     VNADALVGMTQSGYTAFMLSSYRPKAPLYIFTKEKSLVPQLSLSWGVRALYYAEEESL
                     DEIISDQIDILKERGFIKGGDVVINTGSTPVELHLPTNVIKVSRVN"
     gene            complement(2098..>2655)
                     /locus_tag="VLL95_09080"
     CDS             complement(2098..>2655)
                     /locus_tag="VLL95_09080"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF012585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HSR39055.1"
                     /translation="GFDTAVNTAIRAIDKIRDTADAHDRLFIVEVMGRDAGYIALHSG
                     IGTGAEHILIPETKTNIDEIVAGLSEKEKRQKLVNLIVVAEGDEFGGGNEVGKVLKER
                     LPNADVRVCILGHIQRGGSPTSLDRLIASRMGYHAVECLLEGRHNVMVGIVNNKMHYL
                     PLDNAVKAKEKFNKEWLKIVKILAS"
BASE COUNT          569 a          656 c          618 g          812 t
ORIGIN      
        1 caaaataggc tttggcttca tgcaactttc cttccggtat atcccgggtg gcaatagtta
       61 catgtgggtt gaattctggc ttcatcccaa aaatgatgga tgggaattgt tcgccgaatt
      121 cctgcatgca gtctttttcg agctgtgcca aatgttcatt cggcaataca tccacgtaca
      181 acacccgttc tccaaaattg ccgtagccgc tgagagcgat gttgaatgga aggatgccaa
      241 tgctgaatgt gctggcaaaa tcgacgaggt tggcttcaat ctcattttca gctctgaatg
      301 gtggcacaat ggtgatgtgc gccggcgatt tagaggcagc tttcgaaccg tattgctcaa
      361 acatatagtc tttgtactgc ttcacggttg tttcaatggc atcggggcaa acaatggcca
      421 tataatacaa tgaaaatccc tcaggcaatg gcgggcgttt gggtttgaac tgttggccac
      481 ccctttgttg aaacggtttt ctgccgcgtt ggtcgggccc cttcctgtac gaccctctgt
      541 ctctgttctg attatacatg ttctaattaa ctcttgatac tttaataacg tttgtaggca
      601 ggtgcagttc cactggcgtg cttcctgtat tgattactac atcaccgcct ttgatgaatc
      661 cgcgttcttt cagaatgtct atctggtcgc tgatgatctc gtcaagactc tcttcttctg
      721 cgtagtacaa cgcccttact ccccagctga ggctcaattg cggcaccagc gatttttctt
      781 tggtgaagat atacagcggt gctttgggac ggtagctgct cagcatgaaa gcagtatacc
      841 cgctttgtgt catgcctaca agcgcatcgg catttacatc caatgcaatt ttacaggcgt
      901 tgtagcaaat ggcatcgcta aggaatgaag gagaatgtgg ctgcggcttc aacaactctt
      961 cgcggtcgta ctggtaagca gtattctcga tttcgcgaat tattttggtc atggtttcta
     1021 ccaccagtac gggatgttcg ccggttgcgg tttcgccgct cagcatcaca gcatcagcgc
     1081 cttccaatac ggcgttggcc acgtcggtta tttcgctgcg gttgggcttt acgcggtcga
     1141 tcatgctttc catcatttgc gtagccacaa tcacaggctt ggcgcggtgc atgcatttgc
     1201 gaatgagatc cttctggatc atgggcactt tttctaccgg catttctacg cccaaatcac
     1261 cacgggcaat catgatggca tcgctttcca aaatgatgtc gcggatattg gtaacggctt
     1321 ccggcttttc aatcttcgca atgatcttgg tcttgctttt cttttcctcg agtttgctgc
     1381 gcaaaatgac gaggtccttt acactgcgta caaaagagag tgccacccaa tccagtttct
     1441 ggtcgatgat aaaatcgaga tcggccaggt ctttatcagt aagtgcagga agtgaaattt
     1501 ttgtatcagg aaggttgatc ccttttttac tggaaagcgt acctccaatc gtcacttcta
     1561 ctttcacatc gccattgcgc tctatgcttt ttactaccac ttctagcttg ccatcatcta
     1621 tcaggatctt gttgcccagt ttaacgtcgc cggccaggtt gggatagctg acatagatct
     1681 tttctaaagt gccaacacat ttttcattgg tgaaagtgag tacatcgcca ggcgcaacag
     1741 gcaatgcgtt gttttcaatt tcgcccaccc tgagtttggg gccttgcaaa tcgccgagaa
     1801 tggcgatatt gaaaggctgc tcttcattga ttttcctgat gttgttgatg atgtcgagct
     1861 tgtcttcgtg gctgccgtgt gaaaagttca aacgaaaaac gttgacgcct gcccttgcca
     1921 ggttcagcat ggtttcatag ctgttagaag ccggacccac agtggctaca attttggttc
     1981 gtttatagtt gtgttcaatt cccgcctgtt tgtccattcc tctgtaggcg tacttttcac
     2041 tattcctgct cattgggttg atctgttttt aaaaaatgat ggttgactgg ttgtgtatca
     2101 gctggcaagg atcttcacta ttttcagcca ttctttgttg aacttctctt tggctttcac
     2161 cgcattgtcg aggggaaggt aatgcatctt gttgttaaca atacccacca tcacattgtg
     2221 tcgtccttcc agcaggcatt ccacagcatg atagcccatg cggcttgcga tcaacctgtc
     2281 gaggctggta ggagagccac cgcgttgaat gtgtcccaaa atgcacaccc tcacgtcggc
     2341 atttgggagc ctttctttca gcactttgcc tacctcgttg ccgccgccaa attcatcacc
     2401 ctctgccact acaatcaggt tcacgagttt ctggcgcttt tctttttctg aaaggcccgc
     2461 cactatttcg tcaatattgg ttttggtttc aggaatgaga atgtgttcgg ccccggtgcc
     2521 tatgccactg tgcagggcaa tgtatccggc gtcacgtccc atcacttcta ctataaacaa
     2581 ccggtcgtgt gcatcggcag tatcgcggat cttgtcgata gcccttatgg cagtgttcac
     2641 cgccgtatca aatcc
//
LOCUS       DATIQF010000547         2167 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_251919,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000547 DATIQF010000000
VERSION     DATIQF010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2167
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251919"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..836
                     /locus_tag="VLL95_09085"
     CDS             <1..836
                     /locus_tag="VLL95_09085"
                     /inference="COORDINATES: protein motif:HMM:NF014907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HSR39056.1"
                     /translation="KIRELGEAVVSEKYGNLFDMYENIVGENPYKEPMKIYPAVHYTM
                     GGLWVDYELMTNVPGLYALGEANFSDHGANRLGASALMQGLADGYFVIPYTIGNYLAD
                     DIHTKPIPTDHPAFVEAEKAVADRINKLMSIKGTKTVESLHKRLGKIMWDKCGMARNA
                     DGLKQAISEIQQLKKEFWSDVKIPGNINEMNPELDKANRVADFIELGELMCVDALNRN
                     ESCGGHFREEYQTPDGEALRDDANYMYVAAWEYKGDSQWDLHKESLDYEVVKPSQRSY
                     K"
     gene            867..1628
                     /locus_tag="VLL95_09090"
     CDS             867..1628
                     /locus_tag="VLL95_09090"
                     /inference="COORDINATES: protein motif:HMM:NF005746.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HSR39057.1"
                     /translation="MEHYNMNLTLKVWRQQNSSTPGRFESYQVKDISSEMSFLEMIDV
                     LNEELIAEGKDPIAFDHDCREGICGMCSMYIDGRPHGPWEQNTTCQLHMRAYKDGDTI
                     TIEPWRANAFPVLKDLIVDRTAFDRIIQAGGFISVNTGNAVDANALPIEKDKADASFA
                     AAACIGCGACVAACKNSSAMLFTSAKVTQLALLPQGAPERKSRAMNMIAQMDKEGFGA
                     CTNTGACEAVCPKGISLTNIAMLNQEYLGAALTSN"
     gene            complement(1703..>2167)
                     /locus_tag="VLL95_09095"
     CDS             complement(1703..>2167)
                     /locus_tag="VLL95_09095"
                     /inference="COORDINATES: protein motif:HMM:NF024861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HSR39058.1"
                     /translation="IEEGIFRKQEMNKLFVYANVLVAVINKEYPVFSKAIRVLSLADH
                     PQFQLFTSPLALAIAFYFAEKKSGTKSALSKIRLLQEKLHIASCGKSEVEATIQNKKV
                     LDFEDGLQFYAAKHAGCTMIITEDTADFHFADIPVLNCEDCLRHHIWVVKEK"
BASE COUNT          573 a          525 c          537 g          532 t
ORIGIN      
        1 agaagatccg cgagctgggc gaggcggtcg tgagcgagaa gtacgggaac ctcttcgaca
       61 tgtacgagaa catcgtcggt gagaacccct acaaggagcc gatgaagatc taccccgccg
      121 tgcactacac catgggcggt ctttgggtgg actatgaact catgaccaac gtgcctggcc
      181 tgtatgcctt gggtgaagcc aacttcagcg accacggcgc caaccgcctc ggcgcttctg
      241 cactgatgca gggcctggct gatggctact ttgtgatccc ttacaccatt ggcaactacc
      301 tggccgatga tatccatacc aagcctattc ccaccgacca tcctgccttt gtggaagcag
      361 agaaagcggt agccgatcgc atcaacaaac tgatgagcat taagggtacc aagaccgtag
      421 aaagcctgca caagcgcctg ggtaagatca tgtgggacaa atgcggtatg gcccggaatg
      481 cggatgggtt gaagcaggcc atcagcgaaa tccagcaact gaaaaaagag ttctggagtg
      541 atgtgaagat ccccggcaat atcaatgaaa tgaatcctga gttggacaaa gctaaccgtg
      601 tggctgactt tattgaactg ggagaattga tgtgtgttga tgcgctgaat cgcaatgaaa
      661 gctgcggtgg tcacttccgt gaagaatacc agacacctga tggtgaagcc cttcgtgatg
      721 atgccaacta catgtatgta gcggcgtggg agtataaggg cgacagccag tgggatctgc
      781 acaaagaatc actggactac gaagtggtga aaccatcaca gcgttcttac aaataatttc
      841 cttcatccaa tctgaacaaa tcgattatgg aacattacaa tatgaatttg accctgaaag
      901 tgtggcgtca gcaaaacagc agcacaccgg gtcgtttcga aagctaccag gtaaaggaca
      961 tttcctctga aatgagtttc ctggaaatga ttgatgtgct gaacgaagaa ttgattgctg
     1021 aaggaaaaga tcccatcgca ttcgatcatg attgccgtga aggcatttgt ggcatgtgtt
     1081 ctatgtatat cgatggtcgt ccgcacgggc cctgggaaca aaatactacc tgccagttgc
     1141 acatgcgtgc ctacaaagat ggcgacacca ttaccatcga gccctggcgt gccaatgcct
     1201 tcccggtttt gaaagacctg atcgttgacc ggacggcttt cgaccgcatt atccaggcgg
     1261 gcggtttcat cagcgtgaat acaggtaacg ccgttgatgc caatgcactt cccattgaaa
     1321 aggacaaggc cgatgcatct tttgctgccg ctgcttgtat tggctgtggt gcctgcgtgg
     1381 ctgcttgcaa aaacagctca gccatgctct ttacttctgc caaggttacc caactggctt
     1441 tgttgcccca gggtgctcct gaacgcaaga gccgtgccat gaacatgata gctcaaatgg
     1501 acaaagaagg ctttggtgct tgtaccaata ccggcgcctg cgaagccgtt tgccccaaag
     1561 gcatcagcct caccaatatt gccatgctca accaggaata ccttggtgcc gcattgactt
     1621 cgaactaaaa actgtggttc ataaaatgga aaacagccat cggcttatgc tggtggctgt
     1681 tttgttttta attctgaccg cctcattttt cttttacaac ccaaatgtga tgccgaaggc
     1741 aatcttcaca gtttagtaca ggtatgtccg caaaatgaaa atcggctgta tcctcggtaa
     1801 tgatcattgt gcaacctgca tgctttgctg cataaaactg caggccatct tcaaagtcaa
     1861 gtaccttttt gttctgaatg gtggcctcca cttcggattt tccgcaggaa gcgatatgca
     1921 atttttcctg tagcaacctg atcttgctta aagctgattt ggtgccactt ttcttttcgg
     1981 caaaatagaa agcaatggcc aatgccagtg gagaagtgaa caactggaat tggggatgat
     2041 cggccaggct caaaacccga atggccttgc tgaataccgg gtactcctta ttgataacag
     2101 ccaccaaaac gttggcataa acaaacaact tgttcatttc ttgctttcga aatattcctt
     2161 cttcaat
//
LOCUS       DATIQF010000548         4847 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_24138, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000548 DATIQF010000000
VERSION     DATIQF010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4847
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24138"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..401
                     /locus_tag="VLL95_09100"
     CDS             <1..401
                     /locus_tag="VLL95_09100"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HSR39059.1"
                     /translation="VRDYSQGEWDLICNSDFRIITYFDRDIKSRQYDGETWRSICDDV
                     IEHLPQKVHISFDIDGLDPKLCPHTGTPVHGGFDADQVNYLFRRIIASGRQIIGFDLV
                     EIGVGENDWDANVGARELWKLCNLMIASNS"
     gene            436..1011
                     /locus_tag="VLL95_09105"
     CDS             436..1011
                     /locus_tag="VLL95_09105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39060.1"
                     /translation="MLAGKFDYVITLKSPNYRYINLTSQLMLFIFLVTYFFYLFQIGM
                     FGKNLWMVVIPLLIIGLWLYGWIRSSDKTFQVHYRIELMIAAMSWILLPLFEHHQWIG
                     WGYALMAVIERWVKVPDEIGFSKEQVVRNSLPKKRYEWVEIDNVVIRDNLFTLDLRNN
                     KIIQKELEEPIAKEVEEEFNAYCREQLHFRV"
     gene            1063..2379
                     /locus_tag="VLL95_09110"
     CDS             1063..2379
                     /locus_tag="VLL95_09110"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HSR39061.1"
                     /translation="MTPFVLYSDGNGNIFEDQSLYAIGRSGWDAFEVPEDSWIELPDG
                     GNLYELPGRKGIGIDVETGEMRLCEKGWAVAAFIPPAHTNLFLAAYETDAEAPTLPLF
                     CYTAAGWYNDKFYVTAVRIERDIRQECAGYDDGVIANGAQHLMEAYPHNRLVQHLMEN
                     CCNTYHCPAARNFAMGRWECPVPSSPACNANCVGCVSFQPEEETITSPQDRLTFKPTP
                     EEIVEFTVPHLETAPYPIISFGQGCEGEPLLMWETIRDAIIEIRKHTQKGSININTNG
                     SKPAAVEALCQAGLNSIRVSTNSARPEIYTPYYRPNNYTFDDIVESLKVARRYGAWTS
                     INYFVFPGMTDSEAEYEALRKLIRDTDLCMIQWRNFNIDPDWYLGKINVADAGECMGV
                     KQMMELIHEEFPHLKFGYFNPPIERIKGDYNQAFAHLAQDLGGFVA"
     gene            2423..4051
                     /gene="guaA"
                     /locus_tag="VLL95_09115"
     CDS             2423..4051
                     /gene="guaA"
                     /locus_tag="VLL95_09115"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: protein motif:HMM:NF000848.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HSR39062.1"
                     /translation="MDGCLAAVIFAAIMTEKILILDFGSQYTQLIARAVREANVYCEI
                     QPYHKPVQYDAGLKGIILSGSPFSVNEENAPSVDVAAMNAQLPVLGVCYGAQLTAKLY
                     GGRVEKSDKREYGRAFMIKQKEDSLLAGVSDRSQVWMSHSDSIKELPEGFEVLAVTDS
                     IPVAAFKRVDGIGLTVDGNTPSTSQPSTVNSHPLYGFQFHPEVYHSTEGKTLIKNFLY
                     NTCGCTGDWTPAHFISETVAELKAKIGYKKVIMALSGGVDSTVAATLISKAIGKNLFG
                     IFVDNGVLRKNEYEQVLETYKVLDLNVKGVDAKEHFYTKLAGKTDPEEKRKIIGKTFI
                     EVFDHEAHQLTDISFLGQGTIYPDVIESVSVHGPSQTIKSHHNVGGLPDTMKLDLVEP
                     LRFLFKDEVRRVGLELGIPHELLFRHPFPGPGLAIRILGEITEEKVQLLQNADAIYIN
                     GLKKHGLYDKVWQAGTILLPVKSVGVMGDERTYEYTVALRAVTSVDGMTADWAHLPYD
                     FLAHISNEIINNVKGINRVVYDISSKPPATIEWE"
     gene            4161..>4847
                     /locus_tag="VLL95_09120"
     CDS             4161..>4847
                     /locus_tag="VLL95_09120"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HSR39063.1"
                     /translation="MGQESLLERFHALRAEYIELQNQKDVLLQWAKPQLMATYASSIG
                     SAQVALLQMQLRIKALKRKVEMVRGVVARNEQLDVNAIELQVAGELAEAEKAIMEETH
                     LIEQSKLLLDNLVSQKDSNELRKIYVQLAKKLHPDVNPGVTPTQQQIWQEVQDAYNEC
                     DLERLKSLEVIYAAELATAEQTIENWPPETIEERNNTLVTGIAKLRIQILDIKSEFPF
                     TLEANLHNPEW"
BASE COUNT         1316 a         1222 c         1224 g         1085 t
ORIGIN      
        1 gtgttcgcga ctacagccag ggcgaatggg atttgatttg caacagtgat ttccgcatca
       61 tcacctattt cgaccgcgac ataaaatcac gccagtacga tggggaaacc tggcgttcta
      121 tttgcgatga tgtaatagag cacctgcctc aaaaagtaca catcagcttc gatatcgacg
      181 ggcttgatcc caagttgtgt ccgcacaccg gcaccccggt acatggcggt ttcgatgccg
      241 accaggtcaa ttaccttttc cgccgcatca ttgccagcgg acgccaaatc attggtttcg
      301 acctggtgga aatcggcgtg ggagaaaacg actgggatgc caacgtgggc gcccgtgaac
      361 tatggaaact ctgcaacctg atgatagcca gcaatagctg atcagcttaa gtacttcatc
      421 caattaccac ttccagtgct tgccggaaaa tttgactatg tcattacgct gaaatcgccc
      481 aactacaggt atatcaacct gaccagccag ctaatgcttt tcattttcct ggtcacctat
      541 tttttctacc tgtttcaaat cggcatgttt ggcaaaaacc tgtggatggt agtgatccca
      601 ctcctcatca tcgggttatg gctttatggc tggatacgca gttccgacaa gaccttccag
      661 gtgcactacc gcattgaatt gatgattgcg gccatgagtt ggatactgct gccgctgttt
      721 gagcaccacc aatggattgg gtggggctat gcgctgatgg cggtaattga gcggtgggta
      781 aaagtgcccg atgaaatcgg tttttccaaa gagcaggtgg tccgcaattc gcttcccaaa
      841 aagcggtatg aatgggtgga aatagacaat gtggtgatcc gcgacaacct attcaccctc
      901 gatttgcgca acaacaagat catccagaaa gaactggaag aacctatagc caaggaggtg
      961 gaagaagaat tcaacgccta ttgcagggag caactccatt tcagggtttg acaaaggatt
     1021 tgcatcagtt cctgcggctg cctgctaact tcgcagccaa ttatgactcc ttttgtatta
     1081 tacagcgacg gtaacggtaa catttttgaa gaccaatctc tttatgccat tggccgcagt
     1141 ggctgggatg cttttgaagt gccggaagac agttggatag agctgcccga tggtggcaac
     1201 ctgtatgaac tgcccggtcg caagggcatt gggatagatg tggagacagg cgaaatgcgc
     1261 ctgtgtgaaa aaggctgggc tgtggcggct ttcatccctc cggcccacac caatttgttt
     1321 ttggcggcat acgaaaccga tgcggaagcc cccacgctcc ccttgttttg ctatacagcg
     1381 gcaggctggt acaacgacaa attttacgta actgccgttc gcatagaacg cgatatacgc
     1441 caggaatgtg ccggctacga tgacggcgtc attgccaatg gggcccaaca tctgatggag
     1501 gcctatcccc acaaccggtt ggtgcagcac ctcatggaaa actgctgcaa tacctaccat
     1561 tgcccggctg cccgcaactt tgccatgggt cgctgggagt gccctgtccc cagttcgcct
     1621 gcctgcaatg ccaattgcgt gggttgtgta agcttccagc ccgaagaaga aaccattacc
     1681 agtccgcaag accgtctcac gttcaagccc acgcccgaag aaattgtgga attcacggtt
     1741 ccccacctcg aaacggcgcc gtatcccatc atcagctttg gacaaggatg cgagggtgag
     1801 ccactgctga tgtgggaaac catccgcgac gccatcattg aaattcggaa acacacgcaa
     1861 aaaggatcca tcaacatcaa taccaacggc agcaagccgg ccgcagtgga agcattgtgc
     1921 caggccggcc tcaacagcat cagggtgagc accaacagtg cccggcccga aatttacacg
     1981 ccctattacc ggcccaacaa ttacacgttt gatgacatag tggaaagcct gaaagtggcc
     2041 cgtcgatatg gtgcgtggac cagcatcaat tatttcgttt ttcccggcat gaccgatagc
     2101 gaagcggaat atgaagcgct gcgaaaactg atccgcgaca cggacctctg catgatccag
     2161 tggcgcaatt tcaacatcga ccccgactgg tacctgggca aaataaacgt ggctgatgcc
     2221 ggcgaatgca tgggcgtcaa gcaaatgatg gaattgatcc acgaagaatt tccccatctc
     2281 aagtttggtt atttcaatcc ccccatcgaa aggatcaaag gcgactacaa ccaggccttt
     2341 gcgcacctgg cgcaggacct tggcggcttt gtagcctgat gaagccttgc agctgaatta
     2401 gtttttcatt gccattattg caatggatgg ctgccttgcg gccgttatct ttgccgccat
     2461 catgacggaa aagattctta ttctcgactt tggcagccag tatacccagc tgattgcccg
     2521 cgccgtacgc gaagccaatg tatactgcga aattcaacct taccacaaac ctgtgcagta
     2581 tgatgccggc ctcaaaggca tcatcttaag tggcagcccc tttagtgtaa acgaagagaa
     2641 tgccccctcg gtggatgtag cagccatgaa tgcgcaattg ccggttttgg gtgtttgcta
     2701 cggtgcccag ctcaccgcca aactgtatgg cggccgggtg gaaaaaagcg ataagcggga
     2761 atacggtcgt gccttcatga tcaaacaaaa agaagacagc ctgctggccg gcgtaagtga
     2821 tcgcagccag gtgtggatga gccatagcga cagcatcaaa gaactgccgg aaggctttga
     2881 agtgctggct gtaacggaca gcattccggt agccgctttt aaaagggttg acggcattgg
     2941 gttgacagtt gacgggaata caccttctac cagtcaaccg tcaaccgtga acagtcatcc
     3001 gttatacggt ttccaattcc accccgaagt gtaccacagc accgagggca aaaccctgat
     3061 caaaaacttc ctgtacaaca cctgcggctg caccggcgac tggactcctg cgcatttcat
     3121 cagcgaaacg gtggctgaac tgaaagcaaa aattggctac aaaaaagtga tcatggcgct
     3181 gagtggtggt gttgacagca cggtagccgc tacactcatc agcaaagcca ttggcaaaaa
     3241 cctgtttggc atttttgtag acaatggggt gctgcgcaaa aatgaatatg agcaggtact
     3301 ggaaacctac aaagtgctcg acctgaatgt gaaaggcgta gatgccaaag aacatttcta
     3361 taccaaactg gctggcaaaa ccgacccgga agaaaaaaga aagatcatcg gtaaaacctt
     3421 cattgaagtt ttcgatcacg aagcacatca acttactgat atcagtttcc tcggccaggg
     3481 cactatctat ccggatgtga ttgaaagcgt aagcgtgcat ggtcccagcc aaaccattaa
     3541 gagccatcac aacgtaggcg gtcttcccga taccatgaag cttgacctgg tggaaccact
     3601 gcggttcctg ttcaaagatg aagtacgccg tgtgggcctg gaactgggta ttccgcatga
     3661 gttgttgttc cgtcatccct tcccaggccc gggtttggcc attcgcatac tcggagagat
     3721 caccgaagaa aaagtgcagc tgctgcaaaa tgccgatgcc atttacatca acgggttgaa
     3781 gaaacacgga ctttacgaca aagtatggca ggccggcacc atcctgttgc cggtaaaaag
     3841 tgtgggcgta atgggtgatg aaagaaccta tgaatacacg gtagccctgc gtgccgtaac
     3901 cagcgtggat ggcatgacag ccgactgggc gcatctcccc tacgatttcc tggcccatat
     3961 cagcaatgag atcatcaaca atgtgaaagg catcaaccgg gtagtatacg atatcagcag
     4021 caagccaccc gctacgattg agtgggagta aaactcagct ttctctaaaa tcattgaagc
     4081 cttccaaatg gaaggctttt ctttttgaaa gatgctcgtc gtcattattt ccaatcgctc
     4141 accgtattta catttatggc atgggtcaag aatcattgct agaacgattc catgctttgc
     4201 gtgccgaata cattgaactg caaaaccaga aggatgtatt gcttcaatgg gccaaaccac
     4261 aactcatggc aacgtatgct tccagtatcg gttcagcgca ggtggctttg ctgcaaatgc
     4321 aacttcgaat caaggcgttg aagagaaaag tggaaatggt gcgaggagtg gtggcccgga
     4381 atgaacagct ggacgtgaac gccattgaat tgcaggtggc aggagaactg gccgaagcgg
     4441 agaaagccat catggaagaa acgcatttga ttgagcaaag caaactgctg ctcgacaatc
     4501 tagtgagcca aaaagacagc aatgagctga gaaaaatcta tgtgcaactt gccaaaaaac
     4561 tgcacccgga tgtaaatcct ggtgtgacac ccacacaaca gcagatctgg caggaagtgc
     4621 aggatgccta caacgaatgc gaccttgaaa ggctgaaatc cctggaagtg atttacgccg
     4681 ctgaattggc cactgcagaa caaaccattg aaaactggcc acccgaaaca atcgaagaaa
     4741 gaaacaatac attggtgact ggcattgcga aattgcggat ccagatactt gacatcaaga
     4801 gcgaatttcc atttaccctt gaagccaacc tgcacaatcc cgaatgg
//
LOCUS       DATIQF010000549        10868 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_282247,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000549 DATIQF010000000
VERSION     DATIQF010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 10868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10868
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282247"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..225
                     /locus_tag="VLL95_09125"
     CDS             <1..225
                     /locus_tag="VLL95_09125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39064.1"
                     /translation="PQFSINMSKGESFMRNAEAAITNGDIAMMLGANVMLSKFRVNGR
                     YMWGLKDQSAMEGGNPWKRQTIQLGVGFVF"
     gene            367..2772
                     /gene="lon"
                     /locus_tag="VLL95_09130"
     CDS             367..2772
                     /gene="lon"
                     /locus_tag="VLL95_09130"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: protein motif:HMM:TIGR00763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HSR39065.1"
                     /translation="MMNRNDNFFMTGEEDVDFMPIIPITEGESEEDKKIIFPDTIPVL
                     PLRNTVLFPGVVIPITVGRDKSIKAVNDAYKNDKLIGVVAQKDSNVEDPESGDLVSVG
                     TVAKIIKLIKMPDGGTTVIMQGKRRFRLLEMIADDPYFTARIEYLPEQEVPQDQDFAA
                     YVSSIKELATQIIQLSPNIPSEAAIILKNIEHPSFLIHFVSGNMNTDVHEKQAILEMD
                     DIRRRAEELSRLLHRELQFAQLKDQVTNKTRTEIDKQQREYFLQQQLKSIKEELGTDN
                     VAEVNQMRQRAELKKWPESARQAFSQGIEKLERMHPSTPDYSVVYNHLDLMLDLPWDE
                     VTEDNYDLKNAKKVLDHDHFGMQKIKERILEYLAVLKLKGDMKSPILCFVGPPGIGKT
                     SLGRSIAHAIGRKYVRLSLGGLHDESEIRGHRKTYIGAMPGRILQNLRKVKTSNPVMI
                     LDELDKVGNDFRGDPSSALLEVLDPEQNNTFYDNYLELEYDLSKVLFIATANSLQSIQ
                     PALRDRLEIIDLSGYAIEEKVEIAKRHLVPKQQEAHGLANVKVIVPDKVLEKIIESYT
                     RESGVRELDRQLASVMRHQAKEIALHGKVRPTVTAKDVEKILGMPKYSNDLYKTVNMP
                     GVAVGLAWTYVGGDILFIETLLSEGKGDLKLTGNLGNVMKESASTALSYLQANARKLD
                     IDPEQFGKKSIHIHVPEGAVPKDGPSAGVTMLSSLASAFTGRRVKPYLAMTGEITLRG
                     QVLPVGGIKEKVLAAKRAGLKEIILCLQNEKDVNEIDPKFIEGIGFHYVKTMQQVLDL
                     ALV"
     gene            complement(3086..3823)
                     /locus_tag="VLL95_09135"
     CDS             complement(3086..3823)
                     /locus_tag="VLL95_09135"
                     /inference="COORDINATES: protein motif:HMM:NF039623.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5995 family protein"
                     /protein_id="HSR39066.1"
                     /translation="MQTIQDVLVQLDAIISQCAQRPTRQAYFAILYRQMTAAVQAGIA
                     QGAFEDGPRMEKLDVLFAARYVDAWHAFQQGKPTTLSWHLAFSAAPQKLTVIQHLLLG
                     INTHINLDLGIAAAQTAPGDSIFDLQHDFEKINDVIADLSIAMQEKLTRIWWPMRYVS
                     KMARGKDQAVLNFSIDKARDAAWANAVALAQADAKNAQAYIRRIDETVCGIGRKIASP
                     GTFASLALKPVSLMEPSDISTVIKKLI"
     gene            complement(3845..4564)
                     /locus_tag="VLL95_09140"
     CDS             complement(3845..4564)
                     /locus_tag="VLL95_09140"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: protein motif:HMM:NF003626.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HSR39067.1"
                     /translation="MTKLSVNINKFATLRNSRGGNNPDVTQAAIDVQLFGADGVTVHP
                     RPDERHITYADVRSIKPIIKTEFNIEGNCREQKFVDLVLEVKPDQVTLVPDALGQLTS
                     DHGWDTIAHADYLKSIISLFKNAGIRVSIFVDPVIEMVEGAAATGTDRIELYTEGYAR
                     LYAAGKAEEAIAPYVLAANKAKELGLGINAGHDLDRTNLKFLHDRIPFIDEVSIGHAL
                     VCDALYLGLENTIQLYKRQLS"
     gene            4815..5528
                     /locus_tag="VLL95_09145"
     CDS             4815..5528
                     /locus_tag="VLL95_09145"
                     /inference="COORDINATES: protein motif:HMM:NF022441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head GIN domain-containing protein"
                     /protein_id="HSR39068.1"
                     /translation="MKKLLLALVALVGIASVSVAQDHVTGNGKMVTQKRSVSSFDAVN
                     VSGGMQVLVKQAATISVQVEADENLQEYIETEVSGNKLTIRYRNKVSIHGGKVKVYIT
                     VPSLNGASISGSGSMTSESEIPSSGEFKAAISGSGNIRMQTGARNVEARISGSGNIEL
                     GGNANDVDVVISGSGSFKGYNLKSKDVSVTISGSGNVETNVDGPLDAKISGSGSVYYK
                     GNAAISLKSSGSGKVKRAE"
     gene            complement(5643..7529)
                     /locus_tag="VLL95_09150"
     CDS             complement(5643..7529)
                     /locus_tag="VLL95_09150"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HSR39069.1"
                     /translation="MHYLSAENLTKAYGATPLFDSISFHINEGDKIALVARNGVGKST
                     LLKILAGKETADNGKLWINKDVKVVLFEQEPVFAEHKTIAENIFQHDHPVLNAIRDYE
                     AISESGDANAIMHAIQRMDELGAWDFDAKVKQILGKLNIHHLDQRLISLSGGQRKRVA
                     LARTLIDAGFQAQHVLLIMDEPTNHLDVEMVEWLEHYLSHENVTLLMVTHDRYFLDAV
                     CEEIWEMERSNMYTYKGDYENYLEKKAARIENELSSIDKAKNEYRKELEWMRKQPKAR
                     TIKAKSRIDAFYDVEQKAKQRIIDEQLQLQVKMTRLGGKVAEMKKVYKSYGNKTILKG
                     FDYTFTKGERIGIVGKNGVGKSTFLNMLQGLEPADSGKINIGDTVVFGNYSQEGLTWK
                     EDLRVIEYVKQFAETFPLAGGGALTASKFLELFLFPPEKQYTFLSALSGGEKRRLQLL
                     TILFRNPNFLILDEPTNDLDLPTLAVVENFLADYQGCVLIVSHDRYFMDRLVDHLFVF
                     EGDGVVRDFPGNYTQYRLEEALKEKQAEQQKAPTKEAASENSSAVQKPARKKLSFKEQ
                     REFEQLEKEIPALEAEKNLLTQQMSESLPYEKLQEVSARMLAIAQELEAKEMRWLELS
                     EMAG"
     gene            complement(7555..7974)
                     /locus_tag="VLL95_09155"
     CDS             complement(7555..7974)
                     /locus_tag="VLL95_09155"
                     /inference="COORDINATES: protein motif:HMM:NF024675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HSR39070.1"
                     /translation="MPVQLRWSDFDANYHLRHSAYYDFGAMARIEMFKAVGLTDKIFR
                     QEGFGPILFKEECVFRKEVGMYDSIFITCELLHCKRNGARFTIKHRLLKEDDSLVAEI
                     TILGDWIDYNTRKLWHPLPFLVAYVEQMPKHPDFTYL"
     gene            complement(8065..9729)
                     /gene="glgP"
                     /locus_tag="VLL95_09160"
     CDS             complement(8065..9729)
                     /gene="glgP"
                     /locus_tag="VLL95_09160"
                     /inference="COORDINATES: protein motif:HMM:TIGR02094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucan family phosphorylase"
                     /protein_id="HSR39071.1"
                     /translation="MKNPQFKKYHVPYSVDDKYSKKVAYFSMEFAVHQPLKIYSGGLG
                     FLSGSHLRSAYELKQNLIGIGILWKYGYYDQARNQDQTLQVQWNEKIYNFLEDTGIKF
                     QIPIHDHPVWVKAYYLNPETFNTAPLFLLSTDLPENDYVSQTICHRLYDANVATKVAQ
                     FILLGIGGAKLIDELNFHPDVYHLNEAHAISSAFYLLKKFGSVEELKKSLVFTTHTPE
                     EAGNEKHDIYLCDKMSYFYGFPLEKVRQMTGITDDLFNHSLVALRFARIANGVSQLHG
                     EVSRKMWAHHDGVAPITAITNAQNWKYWADKQLYRFMEEGNDYGFDDRKHYLKKRAFD
                     IVADQTGKLFDPDVFTIVWARRFAGYKRADLLTRDLARFEKLLNNADRPVQIIWAGKP
                     YPVDYPAISDFNHLVHLSKQYKNVAVCVGYELALSKRLKQASDIWLNNPRVPREASGT
                     SGMTAAMNGSVNVSTHDGWICEFVNHGNNGFVVPPIDYSKVHVQEQDNYDLEQLYDIL
                     ENQVLPLYYSDRNTWRQVIKNGMRDVRYQFDSNRMAHEYYELLYNA"
     gene            complement(9974..10363)
                     /locus_tag="VLL95_09165"
     CDS             complement(9974..10363)
                     /locus_tag="VLL95_09165"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HSR39072.1"
                     /translation="MNRINISSGAKWEDIVGYSRAVKVGNTVEVAGTTAVINGEVVGQ
                     DNVYEQACCIFEKIETALQQAGASLSHVVRTTAYITDITRWEEYAKAHSRFFDKIRPV
                     ATLVEVSALVDPDLLVEVEVTAVIHDS"
     gene            complement(10370..>10868)
                     /locus_tag="VLL95_09170"
     CDS             complement(10370..>10868)
                     /locus_tag="VLL95_09170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39073.1"
                     /translation="TITTVDEYKKPDGSPAAYSTVYAYNTAGLFMVILSDGLKKGEEM
                     EIINPIDTLPSKNALSGDYGSDKKNFISIRDGETTDKMRFFLHMEKSKQCVAELKGEA
                     RWVKKDLAIFDSNTDGCQVEFRFSGRTVRVSELEGCGSRRPMECNFNASYSKRSSPSK
                     KSNKK"
BASE COUNT         2669 a         2610 c         2756 g         2833 t
ORIGIN      
        1 cctcagttca gcatcaatat gagcaaaggg gagtcgttca tgcgaaacgc cgaagccgca
       61 atcaccaacg gtgatattgc catgatgctg ggtgccaatg tgatgctcag caagtttagg
      121 gtgaatggcc gctacatgtg gggcctcaaa gaccaaagcg ccatggaagg cggtaatccc
      181 tggaaacgcc agaccattca gctgggtgtg ggatttgttt tctgacaggc cctttttgcc
      241 actctggcgg gctgcgaaag acccattgcg acaataagtc aagctttttt cctctggcac
      301 caatattgaa cccagctttg atacccccgg acgcattctg ggggtatcaa actattaagt
      361 cgaacaatga tgaatagaaa cgataatttt tttatgacag gggaggaaga tgtggatttc
      421 atgcccatca ttcccataac agaaggtgag agtgaggaag acaaaaagat catttttccg
      481 gataccatcc ccgttttacc cctccggaat accgtcctgt ttccgggtgt ggtcattccc
      541 attaccgttg gccgcgataa gagcatcaag gctgtaaatg acgcctacaa gaatgacaaa
      601 ctcattggcg tggtggctca aaaggacagc aatgtagagg acccggaatc gggtgacctt
      661 gtcagcgttg gcaccgtggc caagatcatc aagctgatca aaatgcccga cggcggcacc
      721 acggtgatca tgcagggtaa gcgtcgtttt cgcttgctcg aaatgatagc ggatgatccc
      781 tactttacgg ctcgcatcga atacctgccc gagcaggaag tgccgcagga ccaggatttt
      841 gccgcttatg taagcagcat caaagagctg gccacacaga tcattcaatt gtcgcccaat
      901 atacccagtg aggccgccat cattctgaag aacattgagc atccaagctt cctgatacat
      961 tttgtatcgg gcaacatgaa tactgatgtc catgaaaagc aggccatttt ggaaatggat
     1021 gacatcaggc gccgggcaga agagttgagc cggctgctgc accgtgaatt gcagtttgca
     1081 caactgaaag accaggtgac caacaaaacc cgcacagaaa tagacaaaca acagcgggaa
     1141 tattttttgc agcagcagtt gaaaagcatc aaggaagaac tgggtaccga caacgtggcc
     1201 gaggtaaacc agatgcgcca gcgggctgag cttaaaaaat ggccggaatc ggcgcggcag
     1261 gctttcagtc agggcatcga aaagctggag cgcatgcatc ccagcacgcc cgattatagc
     1321 gtggtgtaca atcacctcga cctgatgctg gacctgccct gggatgaagt gacagaagac
     1381 aattacgatt tgaaaaatgc caagaaagtg ctggatcacg accattttgg catgcagaaa
     1441 ataaaagaac gcattctcga atacctggcg gtgctgaaac tgaaggggga tatgaaaagc
     1501 ccgatccttt gttttgttgg ccctccgggt ataggcaaaa cttctttggg acgcagcatt
     1561 gcccatgcca tcggccgcaa gtatgtgcgc ctgagcctgg gtggactgca cgatgaaagc
     1621 gaaatacgcg gacaccgcaa aacttatata ggtgccatgc ccggtcgtat acttcaaaac
     1681 ctgcggaagg tgaagaccag caacccggtg atgatattgg acgagctgga caaggtaggc
     1741 aatgatttca ggggcgatcc ttcgagtgca ttgctggaag tacttgatcc ggaacagaac
     1801 aatactttct acgacaatta cctggaattg gaatacgatc tgagcaaggt gctttttatt
     1861 gcgacggcca attcactaca aagcatccaa cccgcactgc gtgaccgttt ggagatcatt
     1921 gatctttcag gttacgccat tgaggagaaa gtggaaattg ccaaacgcca cctggtgccc
     1981 aaacagcagg aggcacacgg cctggccaat gtaaaagtca ttgtgcccga taaggtgctg
     2041 gaaaagatca ttgaaagcta tacccgcgaa agcggcgtac gtgagttgga caggcaactg
     2101 gcttcggtaa tgcggcacca ggccaaggaa attgctctgc atggaaaagt gcgacccacg
     2161 gtaacggcaa aagacgtgga gaagatcctg ggcatgccca agtactccaa cgacttgtac
     2221 aaaaccgtga acatgccggg cgtggcagtt gggcttgcct ggacttacgt gggcggagat
     2281 atccttttca tcgaaacctt gctgagcgaa ggcaaaggcg acctgaaact gaccggcaac
     2341 ctgggcaatg tgatgaagga aagcgcatcc actgcgttga gctacctgca ggccaatgcc
     2401 aggaagctcg atatcgatcc tgagcagttc gggaagaaga gcattcacat tcacgtgccg
     2461 gaaggagctg tgcccaagga tggtccgagt gccggcgtca ccatgctttc ctcgttggcg
     2521 tcggctttca cgggcagaag ggtgaaaccc tacctggcca tgactgggga aattactctc
     2581 cgggggcagg tgctaccagt gggaggtatc aaagagaaag tattggcggc caagagagcc
     2641 gggttgaagg agatcattct ctgcttgcaa aatgaaaagg atgtcaatga aatagacccc
     2701 aaattcattg agggcattgg ctttcattat gtgaaaacaa tgcaacaagt gctcgacctg
     2761 gccctggtat aactctcaat tataactttt gtaaaaatga ttgaacaacc agccccattt
     2821 ttgggttttg aaaattgaat ttttcatgtt ggttgtttta agggttaata aatctccctg
     2881 ttcacaggga gattttttta ttgaagcgaa gggttgcgga acattgggcg tctgaatatt
     2941 tgcgtggtga gaaatgaaaa tcaataatca aatcatttct ctaaaaccaa acacctactg
     3001 gccttgcgcc aaaacgatat ttccggggtt tgttttagaa caaagaaccc tcccaccggg
     3061 agggtttctt tttttgaaga agaaatcaaa tgagtttttt gatcacggtg gaaatgtccg
     3121 aaggttccat caaactcact ggtttgagtg ccagtgaagc aaaagtgcct ggtgaggcga
     3181 tcttcctgcc aataccacag actgtttcat ctattctcct gatgtaggct tgcgcatttt
     3241 ttgcatcagc ctgtgccagg gccactgcgt tggcccaagc cgcatccctt gctttgtcga
     3301 tgctgaaatt caaaaccgcc tggtcctttc cccttgccat tttggaaaca tagcgcatgg
     3361 gccaccagat gcgggtaagt ttttcctgca tggcaataga caggtcggca atgacatcgt
     3421 ttattttttc aaaatcatgc tgcaagtcga aaatggaatc gcccggtgct gtttgtgcag
     3481 cggcaatgcc caggtcgagg ttgatgtgcg tattgatgcc cagcagcagg tgctggatga
     3541 ctgtaagttt ttgtggtgca gcactgaatg ccaggtgcca gctaagggtg gtgggcttgc
     3601 cttgctgaaa agcatgccag gcatccacat acctcgccgc gaacagcaca tccagttttt
     3661 ccattcttgg cccgtcttca aaagcccctt gggcaatacc ggcttgaacg gcagcagtca
     3721 tctgccggta caaaatggca aaataggcct ggcgtgtagg gcgctgtgcg cattgggaaa
     3781 tgatagcatc gagttggacg agtacgtctt gtatggtttg catgtgtggg aattgatgcg
     3841 gctatcagct taattggcgt ttgtagagtt ggatggtatt ttccaggccc aggtacaatg
     3901 cgtcgcaaac caaagcatgg ccaatggaaa cttcatcgat gaatggaatg cggtcatgca
     3961 ggaatttgag gttggtgcga tccaggtcgt gaccggcatt gatacccagt cccagttctt
     4021 ttgccttgtt ggccgccagc acataaggag caatggcttc ctctgctttg ccagctgcat
     4081 acagccgggc ataaccttcg gtgtacagtt cgatgcggtc ggtgccggtc gccgctgcgc
     4141 cttccaccat ttcaatcacc gggtccacaa aaatggaaac gcggatgccg gcgtttttga
     4201 agaggctgat gattgatttg aggtaatcgg catgggcaat cgtgtcccaa ccatgatcgc
     4261 ttgtcaattg tcccaaggca tcgggtacca gtgttacctg gtcgggtttc acttccagaa
     4321 cgaggtccac aaatttttgc tcccggcaat tgccttcgat gttgaactca gttttgatga
     4381 tgggcttgat ggaccggacg tcggcatagg taatgtgtct ttcgtcgggg cggggatgga
     4441 ctgttacccc atcggcgcca aacaactgca cgtcaatggc cgcctgggtt acatcaggat
     4501 tgttgccgcc acggctgttg cgcaacgtgg cgaacttgtt gatattgaca gacaacttgg
     4561 tcatgagcgt ctcaatttgc ttgagccaaa ggtaagcctg caggtttctt ttatccaatg
     4621 gcattgccaa cttaaggaac gggtttagcc tatccattta ccactcatcc aaaaaatgga
     4681 tgaaactgta acattcaata atcatcatcg ttccaagaat gtcctttccc ggaaaggtcc
     4741 ggcaggaggc atttcaaaat ctacatttta tcactccgtg cagcaataca caaagctgcc
     4801 tcaaaacact tcgcatgaaa aaacttctcc ttgctctggt ggccctggta ggaatagcca
     4861 gcgtgtcggt ggcacaagat cacgtaacgg gtaatggcaa aatggtaacg caaaaacgtt
     4921 ctgtttcttc atttgatgcc gtcaatgtct ctggtggcat gcaggttttg gtaaaacaag
     4981 ccgccaccat cagcgtgcag gtggaggccg atgaaaacct ccaggaatac attgaaacag
     5041 aagtgagcgg caacaaactt accatcaggt atcgcaacaa ggtttccatc catggcggca
     5101 aagtgaaagt gtacatcacg gttccttctt tgaatggtgc ttccatttcc ggcagcggca
     5161 gcatgaccag tgaatctgaa ataccttctt ccggcgaatt caaagcagcc atatcgggca
     5221 gtggtaatat ccgcatgcaa acaggtgcca ggaatgtgga ggcccgcatt tcaggcagcg
     5281 gcaacatcga actgggcggc aatgccaatg acgttgatgt tgtgatcagt ggcagcggca
     5341 gtttcaaagg atacaatctc aaatcgaaag acgtatctgt caccatcagt ggcagcggca
     5401 atgtggagac caacgtggat ggtccattgg atgcaaaaat cagcggtagt ggcagcgtct
     5461 attacaaagg caatgccgct atctctctca aatcttccgg cagcggaaaa gtgaagcgag
     5521 ctgaataaag attaaagctg cacatacaca ccctgcatac atcacaccat tgaattggca
     5581 tgtttttaaa aaaagcgctc cctcaaaaag ggagcgcttt tggattataa aaccaggtgg
     5641 tattatcccg ccatttcact cagttccagc caacgcattt cttttgcttc caattcctgg
     5701 gcgatcgcca gcatgcgtgc cgatacctcc tgcagttttt cgtaaggcaa tgattcactc
     5761 atttgttgtg tgagcaggtt cttttctgct tccagggcag gtatctcttt ttccagttgt
     5821 tcaaattccc gctgttcttt aaaggatagc tttttgcggg caggtttctg aacagccgaa
     5881 ctattttcac tggcggcctc ttttgtcggg gctttttgtt gttctgcctg cttttctttc
     5941 aaggcttctt ccagtcggta ttgggtgtag ttgccgggga agtctctcac cacaccatcg
     6001 ccttcaaata caaacaaatg atccaccagt cgatccatga aatagcggtc gtggcttacg
     6061 atgagcacac aaccctggta gtctgctaaa aagttttcga ctaccgccaa tgtaggcaaa
     6121 tccaggtcgt tggtaggttc gtcgaggatc aggaagttgg ggttgcggaa aagaatggta
     6181 agcaattgta gccttcgctt ttcaccgcca ctgagggccg ataaaaatgt gtattgcttt
     6241 tccgggggaa ataaaaacaa ctcgaggaac ttgctggcag taagcgcacc gccacctgcc
     6301 agcggaaagg tttcggcaaa ctgctttacg tattcaatta cccgcaagtc ttctttccat
     6361 gtcaatcctt cctggctgta attgccaaac acaaccgtgt cgccaatatt gatcttgcca
     6421 ctgtcggctg gttccaaacc ctggagcatg ttgagaaagg tggatttgcc taccccgttc
     6481 ttacccacga tgccaatgcg ttctcctttg gtgaaagtgt aatcaaatcc tttcaggatg
     6541 gttttgttgc catacgattt gtaaaccttc ttcatctccg ccactttgcc gcccagcctt
     6601 gtcattttta cctgaagttg cagttgctcg tcaatgatgc gttgtttggc tttttgttcc
     6661 acatcataaa aggcatcgat gcggcttttg gctttgatgg tgcgggcctt gggttgcttg
     6721 cgcatccatt ccagttcttt gcggtattcg tttttggctt tatcgatgct actcagttcg
     6781 ttctcaattc gggctgcctt tttttcgagg tagttttcat aatcaccttt gtaggtgtac
     6841 atgttggagc gctccatttc ccagatctct tcgcacacgg catccaggaa ataacggtcg
     6901 tgggtcacca tgagcagcgt cacattctca tggctgagat aatgttccag ccattccacc
     6961 atttccacat cgaggtggtt ggtgggttcg tccatgatga gcagtacatg ctgtgcctgg
     7021 aagcccgcat cgatgagggt gcgtgccagg gctacccgct tgcgttggcc gccgctcagc
     7081 gaaatcagcc tttgatcgag gtggtgaatg ttcagtttgc ccagaatctg cttcaccttg
     7141 gcgtcaaaat cccaggcgcc caattcatcc atgcgttgga tggcatgcat gatggcattc
     7201 gcatccccgc tttcgctgat ggcttcataa tcgcgaatgg cattcagcac cgggtgatcg
     7261 tgctggaaaa tattttcggc aatggttttg tgctccgcaa ataccggctc ctgttcaaac
     7321 agcaccactt tcacatcctt gttgatccaa agcttcccgt tatcggctgt ctctttgccg
     7381 gcaagtattt tcagcagggt cgattttccc acaccgttac gggctaccag ggcaattttg
     7441 tcgccttcat tgatgtgaaa agaaatactg tcaaaaaggg gagtagcgcc gtatgctttg
     7501 gtcagatttt cagcagatag atagtgcatg ctttgtcaaa caggtcaatg gaaattacag
     7561 gtaggtgaaa tcggggtgct tgggcatttg ctcaacatag gcaaccagga agggaagggg
     7621 atgccagagc tttcgggtgt tgtagtcgat ccaatcgccc aaaatggtga tttctgccac
     7681 cagcgaatca tcctctttca gcaggcggtg tttaatggta aatcgtgcac cattgcgctt
     7741 gcaatgcagc aattcacagg taatgaaaat agaatcgtac atgcctactt ccttgcgaaa
     7801 cacgcactct tccttgaaca ggatgggccc aaagccttcc tgcctgaata ttttgtcggt
     7861 aaggcctacc gctttaaaca tttcgatccg tgccatggcg ccaaaatcgt aataggcact
     7921 gtgacgcaaa tggtaattgg cgtcgaaatc gctccagcgc aattgcactg gcatttttaa
     7981 agaaggagcg ttttccatgg cggcaaagat gggtaaaaaa ataccccggt tgcgggccgg
     8041 ggtagttcac tattgttaat gtgttcaggc gttgtacaac aactcgtagt actcgtgagc
     8101 catgcggttg ctgtcgaact ggtagcgtac atcccgcatg ccattcttga tcacctggcg
     8161 ccatgtgttc ctgtcgctgt agtacaaggg cagtacctgg ttttccagga tatcgtacaa
     8221 ctgctcgaga tcgtagttgt cctgttcctg tacatgcact ttgctgtaat caatgggagg
     8281 cacaacaaag ccgttattgc catggtttac gaattcgcaa atccagccat cgtgggtgct
     8341 cacgtttacc gaaccattca tggcggcggt catgccgctg gtgccgctgg cctcgcgggg
     8401 tacccgtggg ttgttgagcc aaatatctga agcttgtttc aggcgcttgc ttaatgccaa
     8461 ctcgtagcct acgcacacag caacattctt gtattgcttg ctcaggtgca ccaggtgatt
     8521 gaaatcgctg atggcgggat agtctaccgg gtaaggcttt ccggcccaaa taatttgaac
     8581 cggacgatca gcattgttaa ggagtttttc aaagcgtgcc aggtctctcg tgagcaaatc
     8641 ggcacgtttg taaccggcaa atcggcgggc ccatacaatg gtgaacacat caggatcaaa
     8701 tagctttcct gtctggtcgg ccacaatatc gaaagcacgc ttcttgaggt aatgctttcg
     8761 gtcgtcaaac ccataatcgt tgccttcttc catgaaacga tacaattgct tgtcggccca
     8821 gtatttccag ttctgcgcat tggtgatggc agtaataggc gcaacgccat catgatgagc
     8881 ccacattttg cggctcacct ctccgtgcaa ctggctcacc ccattggcaa tgcgtgcaaa
     8941 gcgcaaggcc accagcgaat ggttgaaaag atcatccgtg atgcctgtca tctggcgcac
     9001 tttttccagc gggaacccat agaaatagct catcttatcg cagaggtaga tatcgtgctt
     9061 ttcattgccc gcttcttccg gtgtatgggt ggtaaatacc aggctctttt tcagttcctc
     9121 cacgctgcca aacttcttca gcaggtaaaa ggcgctgctg atggcatggg cctcgttgag
     9181 gtggtataca tcaggatgga aattgagttc atcaatcaat ttggcaccgc caattcccag
     9241 caaaatgaat tgcgccactt tggtagccac gttggcatca taaagacgat ggcaaatggt
     9301 ttggcttaca taatcatttt ccggcaggtc ggttgacagc aaaaagagcg gtgctgtatt
     9361 aaaagtctca ggattgaggt agtaggcctt tacccaaacc gggtgatcgt gaatcggaat
     9421 ctggaatttg atgcccgtat cttccaggaa gttgtagatc ttttcgttcc actgaacctg
     9481 cagggtctgg tcctggttgc gtgcctggtc gtaataaccg tatttccaca gaatgccgat
     9541 gcctatgagg ttttgcttca actcgtaggc gcttcgcagg tgcgatccgg aaagaaagcc
     9601 caacccgcca ctgtatatct tgagtggttg atgcacggca aactccatgc tgaagtaggc
     9661 tactttcttg ctgtatttat cgtcaacaga atacggaacg tggtactttt tgaattgagg
     9721 atttttcatc gcaaagcgtt tagatcaagt tttgttcaat cttcgtttat atggcctgct
     9781 gttcctcttt cgctggaatg agtacgagga atcaccggtc gcaaacccga ttagctggca
     9841 ttttataaag caggacctcc aatgctcctg gatgctgttt tggccaaagc gtttcgtatt
     9901 tggggccgca atataggtga aatgcgtgtt tttactgtgt aagttgtaca cagccttgct
     9961 tttgcgaaaa aaatcaggaa tcatggatga ccgcggtcac ttccacctct accaaaaggt
    10021 cggggtctac cagtgccgat acttccacca gggtagctac gggccttatt ttatcgaaga
    10081 accgggagtg tgccttggcg tattcctccc aacgggtaat gtccgtaatg taagcggtgg
    10141 tgcgaaccac gtggctgagg ctggcaccgg cctgctgaag ggctgtttct atcttttcga
    10201 aaatgcagca agcctgttca tacacattat cctggccaac tacctcacca tttattaccg
    10261 ctgtggtgcc cgctacttcc acggtattgc ccacttttac cgctcttgaa taccctacga
    10321 tatcctccca tttggcaccg ctgctgatgt tgatgcgatt catacggtat tactttttgt
    10381 ttgatttttt ggaaggactg cttcgtttgc tgtagctggc attgaagttg cactccatcg
    10441 ggcggcggct tccacaaccc tccaattctg aaacgcgaac ggtgcgcccg gaaaaccgga
    10501 attccacctg gcagccatcg gtattcgaat caaatatggc caggtctttt tttacccaac
    10561 gggcttcgcc tttcagttct gccacgcact gtttgctttt ttccatgtgc aggaagaagc
    10621 gcatcttgtc agttgtttca ccatcgcgaa tgctgatgaa gtttttctta tcggagccat
    10681 aatcgcccga taaggcgttc ttgctgggca aggtatcaat gggattgatg atttccatct
    10741 cttcgccctt tttcaatcca tcgctcagaa tcaccatgaa caagccggct gtattgtatg
    10801 catacacggt agagtaggca gccggagaac cgtcgggttt tttgtattca tccaccgttg
    10861 taatggtg
//
LOCUS       DATIQF010000550         4677 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_54466, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000550 DATIQF010000000
VERSION     DATIQF010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4677
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54466"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..630)
                     /locus_tag="VLL95_09175"
     CDS             complement(<1..630)
                     /locus_tag="VLL95_09175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39074.1"
                     /translation="MQPTNDKVYLLMQPNRLLHRTPVLQLLKVSKQEGRLLMEELPIH
                     SGIVNLHAKKLDPEARKILLRFSQAELEKERLAIELRFTKQSTEKDYDRYKDKQLARY
                     YLQGMGQLKQYNQQLAWYHRLPQEQSNRVVTAPCTYHPLSVQLEFIIGVENDTPVISV
                     VVLHGKQKTPLQEFNRYYFLLQKQHEYWHLTLKAYEALEWLEEHPFDASH"
     gene            875..1480
                     /locus_tag="VLL95_09180"
     CDS             875..1480
                     /locus_tag="VLL95_09180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39075.1"
                     /translation="MLHKFLLSVLLFACYSLNAQNDSQKVVANVTRLAIINPGFSYET
                     TIGSKSTLYSEVGLAPFIRMGWAAVEAEGFKFRMDPFVNLQYRAYYNFKRRTEKKLRT
                     DLNSLNYIAPSLGISYSKNAIHSDGYDEPDRRVLSSVGVYWGMQRNFKSRFSLDLMIG
                     PGYLFGKTTYNDGVGGSYSEGDGRFVLNTRLILGLWLNKKE"
     gene            complement(1589..2260)
                     /locus_tag="VLL95_09185"
     CDS             complement(1589..2260)
                     /locus_tag="VLL95_09185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39076.1"
                     /translation="MKKYLLLACLVASAHLFAQDNPTKKMYSVFAGETIFSWGNVKAE
                     GLNTKNIVRFTIFLHLNQQFHYDFSKKAGFFTGISLRNVGIITDLNDTVRMKQRVYTL
                     GIPVALKLGNMNGTNFALGAEAELAIHYKQKNFVNGERGRTTEWFSDRTNLFLPSVFA
                     QINFKDGLYLKYKYYLTDFLVEDAQRTNVPNLTYRPTSSQMMYISLGVAVPNRVIKNE
                     TKSLM"
     gene            2419..3141
                     /locus_tag="VLL95_09190"
     CDS             2419..3141
                     /locus_tag="VLL95_09190"
                     /inference="COORDINATES: protein motif:HMM:NF024141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR39077.1"
                     /translation="MYTLFRKELKQFFSNLTGFLSIGLFLLLMGLFLFVFPDTSLLDF
                     GYATLDKFFELAPWVLLLLVPAVTMRSFSDEFRSGTWELLKTKPLSLAQIAGAKYMAS
                     LVVVLLSLLPTLLYVVTIKVLSINGSIDSGAIAGSYVGLALLAAVFTAIGVCCSALTN
                     NAIISFLLSAFVCFIMYSGFAAVASMETLQGGPDYWIAMFGIDEHYKNISRGVVAVKD
                     IAYFAVVIGLFLLFTRKFIAQR"
     gene            3152..>4677
                     /locus_tag="VLL95_09195"
     CDS             3152..>4677
                     /locus_tag="VLL95_09195"
                     /inference="COORDINATES: protein motif:HMM:NF021351.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gldg family protein"
                     /protein_id="HSR39078.1"
                     /translation="MKKQLMQWIGWKVLAALLIVAASFITWRLDLTAEKRYTISEPSK
                     NLLRNLQEPVEVTVLLTGDDLPAGFRKLRNAANDFLADSRSISNGKLQFRFVEPDAFV
                     SDSLRYPIEDSFKIAWLKSSAVKQNEVTKSGTSAVFNYPIALLKSGDNYATVNLLEGQ
                     GNKGFLNPDANGLQYETINNAEAQMEYHFVSAIQQLTNPYVPTVAYATGNDEPMGPET
                     FDLSQTLQSKYRFFLLNLQQQPFISDSIKVLLIAKPKAPFSDADKLKIDQYVMRGGKV
                     LFMIDALNADMDSLVRSGKEFTAYARDLRIDDLIFKYGARINGDLVQDMQSDVLPQSV
                     GMVGDQPQIEILPWPYFPLLYSQSNHPIAKNLDAVVMQFPNSVDTVKAEGIRKNVLLS
                     TSNTSRKIGAPVIVTVEILKQIENASAFKESNIPLAVLLEGKFKSLFANRLSREMMDS
                     LAAMGRPYLAQGNREGQVLVTGDGDWVLNGFNREGPLPMGTNPYTQYSFANKNFLLNA
                     "
BASE COUNT         1117 a         1119 c         1194 g         1247 t
ORIGIN      
        1 atgtgatgca tcaaatggat gctcttccag ccattccaag gcctcgtagg ctttgagtgt
       61 aaggtgccag tattcgtgtt gcttttgcag caggaaatag tagcgattga attcctgcaa
      121 cggcgttttt tgctttccgt gcagcaccac cactgaaatg accggcgtat cattttcaac
      181 gccaattatg aattcaagct gcacactcag tggatggtag gtgcagggag cggtaacgac
      241 gcggttgctt tgttcctgcg gcagccgatg gtaccaggcc agttgctggt tgtattgttt
      301 caactgcccc atgccctgca ggtaatagcg ggccagttgc ttgtccttgt acctgtcgta
      361 gtctttttca gtgctttgtt tggtaaagcg taattcaata gcaagccgct ctttttccag
      421 ttctgcctgg ctgaaacgca ataatatttt gcgggcttcc gggtccagct ttttggcatg
      481 caggtttaca atgccactgt ggatgggcaa ttcctccatc agcagcctgc cctcttgttt
      541 gctcactttc agcaactgca aaacaggtgt gcggtgcaac agccggttgg gctgcatcag
      601 caaatacact ttgtcgttgg tgggttgcat cagtggatcc gttgggtgga aagggcggca
      661 aacttagggg ggaatcacgg cagcatgggc tgaaaaattg tcagtggggt tcaccgattc
      721 gaacaatggt tttacctggc ttcctattac ccatcaagcc gcaatatggg tccattgcca
      781 ttgcatcgat tgaaattctg tatccgtagt tcattgcggg gttgacgagt tgcatttgtc
      841 atctgggcaa gctattttcg aacgaaaaaa gcctatgctt cataaatttt tactttctgt
      901 tcttcttttc gcctgctatt cattgaatgc gcaaaatgat tcacaaaaag tagttgccaa
      961 tgtcacaagg ttggcgataa ttaaccctgg ctttagctat gagacgacca ttggttccaa
     1021 atccacattg tattcggaag tgggcctcgc tcctttcata aggatggggt gggctgccgt
     1081 tgaagcggag ggcttcaaat tccggatgga tccctttgtc aacttgcagt acagggccta
     1141 ttacaatttc aagcgtcgta cagagaaaaa gctacgcacc gatttaaaca gcttgaatta
     1201 tatagccccc tcgttaggga tttcttattc caaaaatgct attcattcgg atggctatga
     1261 tgagcctgat cgtcgggtat taagctctgt aggagtgtat tggggtatgc agcgaaattt
     1321 caaaagccgt ttcagcctgg atttaatgat tggcccaggc tatctttttg gaaagactac
     1381 ctataatgac ggcgtaggag gatcttactc cgaaggcgat ggccggtttg tactcaacac
     1441 ccgcctcata ttaggacttt ggctgaacaa gaaggaatag catatgggtt ggctaagcaa
     1501 tggaacatac cattgaccct gcctctcaaa tgaaaaaagc acaggccgct ggtctgtgct
     1561 tttttttagc cgctggagca agagatattt acatcaacga tttcgtttca tttttgatta
     1621 ccctgttggg tactgccaca cccaatgata tgtacatcat ctggctgctg gtggggcggt
     1681 aggtcaggtt gggtacgttg gtccgctggg catcttccac caggaaatcg gtcaggtaat
     1741 acttgtattt gaggtagagg ccatccttga aattgatttg tgcaaatacc gaaggcaaaa
     1801 agagattggt acgatcgctg aaccattcgg tggttcttcc tctttcccca tttacaaagt
     1861 ttttctgctt gtagtggatg gccagttcgg cttcggcgcc cagcgcaaaa ttggtgccgt
     1921 tcatattacc cagtttcaat gccaccggta tacccagtgt gtatacacgc tgcttcatgc
     1981 gtaccgtatc attcaggtcg gtgatgatac ccacgttgcg caggctgatg ccggtgaaga
     2041 aacccgcttt tttgctgaag tcgtaatgga attgctgatt caggtgcagg aagatggtaa
     2101 aacgaacgat gtttttggtg ttaaggcctt cggcttttac gttgccccaa ctgaaaatgg
     2161 tttcgccggc aaatacggaa tacattttct tggtaggatt gtcctgggca aaaaggtgtg
     2221 cagacgccac caggcaggcg agtaacaggt actttttcat ggtaaggatt gaatttggcg
     2281 ccgaaggtaa gacttgacat ttgcttaaag gagcagagtt agatgaacgg cggccggcca
     2341 accgatttca taaagttctt caccagtgcc ccggcgcaat acgcaaatcc ccgcttcccc
     2401 cgttaatttg tggcgcttat gtatacattg tttcgcaaag agctgaagca gtttttcagc
     2461 aaccttaccg gtttcctgtc cattgggctg tttttgctgc tcatgggcct gttcctgttt
     2521 gtgttccccg acaccagcct gctcgatttc ggctatgcca ccctcgataa gttttttgaa
     2581 ctggcaccct gggtgctgct gttgttggtg cccgccgtta ccatgcggag tttcagcgat
     2641 gaatttcgca gcggcacctg ggaactgctg aaaacaaaac cgctcagcct ggcacaaata
     2701 gccggcgcca aatacatggc cagcctggta gtggtgttgt tgtcgctgct gcctacactg
     2761 ctgtatgtgg tcaccatcaa agtgctcagc atcaacggca gcatcgatag cggcgctatt
     2821 gccggttctt atgtgggcct ggccctgctg gctgctgtat tcacggccat aggcgtgtgc
     2881 tgttcggcgc ttaccaacaa tgccatcatc agttttttgc tctcggcttt tgtgtgcttc
     2941 attatgtaca gcggatttgc cgccgtagcc agcatggaaa cgctgcaagg cggtcctgat
     3001 tactggattg caatgtttgg cattgatgaa cattacaaaa acatcagccg aggtgtggtg
     3061 gcggtaaaag acattgccta tttcgccgtg gtcatcggtt tgttcttgtt gtttacccga
     3121 aaattcattg cacaacgcta aacagtacgg aatgaaaaag caactgatgc aatggattgg
     3181 atggaaggtg ctggcggctt tgctgatcgt ggctgcttcc tttattacct ggcgactcga
     3241 tctgaccgct gaaaagcgct acaccatcag cgagccttcc aaaaacttgt tgcgcaactt
     3301 gcaggagccg gttgaagtga cggttttgct caccggcgac gatctgccgg ccgggtttcg
     3361 caaactcagg aatgctgcga atgatttcct ggccgatagc cgcagcatca gcaatggcaa
     3421 gctgcagttt cgttttgtag aacccgatgc attcgtgtcg gattcactgc gttatcccat
     3481 tgaagactca ttcaaaatag cctggctgaa aagcagtgcc gtaaaacaaa atgaagtcac
     3541 gaaaagcggc accagtgcgg tattcaatta tcctattgcc ctcctcaaga gtggcgacaa
     3601 ttatgccacc gtgaatttgc tggaaggaca gggcaacaaa ggattcctga accctgatgc
     3661 caatggtttg caatacgaga ccatcaacaa cgccgaagca caaatggaat atcattttgt
     3721 gtcggccatt caacaactga ccaaccctta tgtgcccacc gtggcctatg ccaccggcaa
     3781 tgatgagccg atggggcccg aaacctttga cctgagccaa acgcttcaat ccaagtaccg
     3841 tttcttcctg ctgaacctgc agcagcaacc tttcatcagc gacagcatca aagtgctgct
     3901 catagccaag cccaaagcac cgttttcaga tgccgacaaa ctgaagattg atcaatacgt
     3961 gatgcggggc ggcaaagtgc tgttcatgat tgatgccctc aatgccgaca tggacagcct
     4021 ggtgcgaagc ggcaaagaat tcaccgccta tgcccgtgac ctgcgtatcg acgatctcat
     4081 ttttaaatac ggcgcccgta tcaatggcga cctggtgcag gacatgcaaa gcgacgtgct
     4141 gccgcaatcg gtaggcatgg tgggcgacca gccacagatt gaaattctcc cctggccata
     4201 cttcccttta ctgtacagcc aaagcaatca tcccattgcc aagaacctgg atgcggtagt
     4261 gatgcagttt cccaacagcg tggataccgt gaaggcagaa ggcatccgta aaaacgtctt
     4321 gctgagcacc agcaacacca gccggaaaat tggagcaccg gtgattgtaa cggtggagat
     4381 cctgaagcaa atcgaaaatg cttccgcttt caaggaatca aacattcctt tggctgtgtt
     4441 gctggaagga aaattcaaaa gtttgtttgc gaaccgactt tccagggaaa tgatggacag
     4501 cctggcggcc atgggtcgtc cgtatttggc gcaaggcaac cgggaaggac aggtgctggt
     4561 gactggcgat ggcgattggg tgctgaatgg gttcaaccgc gaagggcctt tgcccatggg
     4621 caccaatcct tatacgcaat acagtttcgc caacaagaat ttcctgctca atgccat
//
LOCUS       DATIQF010000551         5356 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_160852,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000551 DATIQF010000000
VERSION     DATIQF010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5356
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160852"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3338)
                     /locus_tag="VLL95_09200"
     CDS             complement(<1..3338)
                     /locus_tag="VLL95_09200"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HSR39079.1"
                     /translation="MRARTQEYLGLCTYMVGGFMEANEWYGKAANDYREAGTFSEIGN
                     VLSRIDVNNKWAYTYKVRTLPATVTNKTEEVFFQVVRVIAQSNDSVEVLLDGGSLDGV
                     EPGATGYLSLSYNSKRADRSAGNIYVASVAVTKAGPNQCVAKGAFYRDTKDNNKNISE
                     GDLVTLKITPVKKKTGNILSDLAALNIIFKKADSDTLQSQSSLRRMPNRDIEAAALAF
                     AAWDCRDFYESYLKDVEEKGFTDLFTSGRWKGQNMKDAFRQLQPIDLHAFLLFVKAFP
                     GKYMGKAWKLNETYATWLINNTPPGEKGKMWLLPYIHATPLSQIDSFALKYQAYIQED
                     SLLSYWDGLNQLYNAQQFEQALDLNQKLLTIAKVIRDQGAVTSFTLYSSYIFDKMGNK
                     QESLNRARMAYALDKNSVGAGFNLASLYGQLEKFDSCFAILEPMVKKYPDYSNALGSL
                     GWYKITAGKVTEAIPYCRNAYLLDSTNMAWAVNYGHTFLLTGSSLDSARKYYQRSLDN
                     LSSPTDYAEGPKKDLELFFSKGWKRVETAAMLEWMEKEYDSKYKYLTTGNQIWIKARA
                     FYDKGQYDEAANTWKEYVASYGPMKQPPLRYIHNAYAWMGESYKLNGQPDLEEKYYLT
                     ATQWARDSIRDQPLLIEDYQRMFEFYSKGVNAKKARDFKLLYDVEKQKYDDARARPQL
                     YLVCVEGENTLQPESKLNAKKFFERFDSLARKSFDSLHGYYLAGEKATKSNLTKLMNR
                     VTRSCRPEDVLIFYYTGAVISAPGRESEYQLAKQNDAKESSIMESDLLALLKDPSMHK
                     KLIISDVPAPGMLSKLTMGYNAESYNLNEVIFTCPGVLTSVNENGTSAFTEQLLESAT
                     ALAADSMFTAKQLLEKAAYGLGRGKYYLPMLSFAYAKDFSIYKNAGYRAQEEATRSVI
                     TRKPATAQSSESVSETGRNFALLFATNNYKELTQLSNPVFDATELGKILKESFGFETE
                     LVTNPTRDEMENKLAEYRDNKIYGPNDQLFIFFAGHGVYNENARMGFLAASDSKKSDP
                     YFRSYLSYADLGGQYLTNIKCNRIFVTLDACFAGSFFDQSTVRGDEPSAASIEILKRN
                     ATGKKYYKGISSGGKEYVADGRAG"
     gene            3865..4554
                     /gene="aqpZ"
                     /locus_tag="VLL95_09205"
     CDS             3865..4554
                     /gene="aqpZ"
                     /locus_tag="VLL95_09205"
                     /inference="COORDINATES: protein motif:HMM:NF003838.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015250 - water channel activity [Evidence
                     IEA];
                     GO_process: GO:0006833 - water transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HSR39080.1"
                     /translation="MNKLVAEFFGTFWLVLGGCGSAVLAAAIPDLGIGLMGVSLAFGL
                     TVVTIAYGLGHISGAHLNPAVSIGLWMGGRFAAKDLPGYIVAQILGAIAAAGVLYVIA
                     TGNGTDAIGAGFAANGYGEHSPGKYSMNAALVTEVVMTFMFLLVILGSTDKRAPAGFA
                     GLAIGLCLTLIHLISIPVTNTSVNPARSISQALFVGGWALEQLWLFIVAPIVGAAAAG
                     IVYKMFASEPK"
     gene            complement(4612..>5356)
                     /locus_tag="VLL95_09210"
     CDS             complement(4612..>5356)
                     /locus_tag="VLL95_09210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39081.1"
                     /translation="SFLFIAVAGLAAITAILLILSQFACHLGWDQVEGYWLSRFSERS
                     VSAGQSTMGHSLKIFLRFLLAGYGPLLLLILISFLSASAKRAPHHWIHFAIGITLVYN
                     LVFLNWSLEHEFAWMVMSLLMILWLAFRRTEWLAGKAGKRWIILAAGCSLVIYFFINQ
                     PGSISQSGQPYDLQKKLGEKIASSIPADAVIFTNLSNAKIEEWYAGRTFNQARSMDDA
                     WRIADSLQLPKAVWMELRDNRIVELKPIK"
BASE COUNT         1213 a         1285 c         1303 g         1555 t
ORIGIN      
        1 tgaccagctc tgccatccgc cacatactct ttgccgccgg atgaaatgcc cttgtaatat
       61 tttttgcccg tggcattgcg tttcagaatt tctatcgaag cggcgcttgg ttcatcgcct
      121 ctcaccgtgc tctggtcgaa aaatgaacca gcaaagcatg catcgagtgt cacaaaaatc
      181 ctgttacact taatgttggt gaggtactgg ccacccaggt cggcatacga caaatagctt
      241 ctgaaataag gatctgattt tttggaatcg gatgcagcca ggaatcccat ccttgcattt
      301 tcattataaa caccgtgccc ggcgaagaaa ataaacaact gatcgttggg gccgtaaatc
      361 ttgttgtcgc gatactctgc cagtttgttt tccatttcgt cccgggtggg attagtcacc
      421 aactctgttt caaaaccaaa tgattctttg aggatcttgc ccagttccgt ggcgtcaaaa
      481 accgggttgc tgagttgggt gagttctttg taattgttgg tggcgaacag caaagcaaaa
      541 ttgcggccgg tttcgctcac cgattccgat gattgtgcgg ttgcgggttt cctggtaatt
      601 acacttcttg tggcttcttc ctgtgccctg tagccggcat ttttataaat actgaagtct
      661 ttggcatagg cgaacgacaa catgggcagg tagtatttgc ccctgcccaa accataggcg
      721 gctttttcga gcaattgttt ggcagtaaac atgctgtcgg cagcaagtgc ggtggccgat
      781 tccagcaatt gttcggtgaa tgccgatgtg ccgttttcat tgactgaggt caaaacaccc
      841 gggcaggtga atatgacttc attcaaattg taagattctg cattgtatcc catggttagc
      901 ttgctgagca tgcccggcgc cggcacatca ctgatgatga gttttttgtg catggagggg
      961 tctttgagca atgccaacaa atccgattcc atgatggatg attcctttgc atcattttgt
     1021 ttggccagct gatattcgct ttctcttccc ggggcgctga tgacggcacc agtgtagtag
     1081 aagatcagca catcttccgg cctgcaactc ctggtaaccc tgttcatcaa cttagtgagg
     1141 ttggatttgg tcgctttctc tcccgccaaa taatagccat ggaggctgtc gaagcttttc
     1201 ctcgccaggc tgtcgaaacg ctcaaagaat ttttttgcat tcaacttgct ttccggctgt
     1261 aatgtgttct cgccttctac acaaaccagg tacagttggg gcctcgctct tgcatcgtca
     1321 tatttctgtt tttcaacatc atacagcagc ttgaagtcac gggctttttt ggcatttact
     1381 cctttgctgt aaaattcaaa catgcgctgg tagtcttcta tcagcaatgg ctgatcgcga
     1441 atgctgtccc tggcccattg cgtggcggtc aggtaatatt tctcctccag gtcgggctgt
     1501 ccattgagtt tgtagctttc gcccatccag gcgtaggcat tgtgaatgta gcgcaggggc
     1561 ggctgtttca tgggcccata actggccacg tattccttcc aggtattggc cgcttcgtca
     1621 tactgccctt tgtcgtaaaa tgctcgggcc tttatccaga tctggttgcc tgttgtaagg
     1681 tatttgtact tgctatcata ctccttttcc atccattcca gcatggccgc ggtttcaacg
     1741 cgtttccacc ctttgctgaa aaacaactcg aggtcttttt tcggaccttc cgcataatcg
     1801 gttggtgagg agagattgtc gaggctgcgt tggtaatact tgcgggcact atccaggctg
     1861 cttcctgtca gtaaaaaagt atggccatag ttcactgccc aggccatgtt ggtcgaatcc
     1921 aacaaatacg cgttgcggca ataggggatg gcctcggtca ccttgcctgc tgtgatctta
     1981 taccatccca ggctgcccaa agcatttgaa taatcggggt atttttttac catgggttcc
     2041 aggatggcaa agcagctgtc aaatttctcc aactgcccgt acagggaagc caggttgaaa
     2101 ccagcgccta ctgaattctt gtctagtgca tacgccattc gggcacggtt aagggattcc
     2161 tgcttgttgc ccattttgtc gaagatgtaa ctggagtata atgtaaaact ggtcactgct
     2221 ccctggtcgc ggatcacctt cgctatggtc agcaatttct gattgaggtc aagggcttgt
     2281 tcaaattgtt gcgcattgta cagttgattt agtccgtccc aataggaaag caaactgtct
     2341 tcctggatgt aggcctggta tttgagggcg aacgaatcga tttgtgacag gggggtggca
     2401 tggatgtagg gcaatagcca cattttccct ttttcaccgg gcggggtatt gttgatgagc
     2461 caggtggcat atgtttcatt cagtttccag gcttttccca tgtatttgcc ggggaatgct
     2521 tttacaaaaa ggagaaacgc atgcaggtca atgggctgca actgcctgaa tgcatccttc
     2581 atgttttgcc ctttccatct tcctgaagta aataaatcgg tgaacccttt ctcttcaacg
     2641 tctttcagat agctttcata aaaatcgcga caatcccatg cagcaaaggc aagagctgcc
     2701 gcttcaatat cgcggttcgg cattctgcgc aatgaactct gcgattgcaa agtgtcgcta
     2761 tccgcttttt taaatataat gttgagcgct gccaggtcag agagaatgtt ccctgttttt
     2821 tttttcactg gtgtaatctt gagcgtcacc agatcacctt cgctgatgtt tttgttgttg
     2881 tctttggtat cgcggtaaaa tgctcctttg gccacacatt ggtttggccc tgctttcgtt
     2941 accgctacgc tggcaacata aatattgccg gcgctgcggt cagctctctt gctgttgtat
     3001 gacaatgaca gataccccgt ggcgccgggc tccacgccgt caagactgcc cccatccaat
     3061 agtacttcca cactgtcatt gctttgtgct attacccgga ccacctggaa aaaaacctct
     3121 tccgttttgt tggtcactgt ggcgggcagt gttcgcacct tgtaggtata tgcccatttg
     3181 ttgttcacat ctatccggga aagcacattt ccaatctcgc tgaatgtacc agcctcgcgg
     3241 tagtcgttgg cggcttttcc ataccattca ttggcttcca tgaagccacc caccatgtag
     3301 gtgcaaagcc ccaggtattc ctgggttcgt gcacgcatcc caaaatccag cggttgtttt
     3361 ttttgctctg cctccagtgc tgataaaaat gcttttttgg cttctgcata ttttttctca
     3421 ctgtagagtt ttgtcccttg ttcgtagtat gtatttgcct ggccgaaagc caccaatgaa
     3481 caaagacaaa ggcaaattgc taacacctgc ttcatatttc taatatagcg aaaaggaaag
     3541 ctacctgcat accgtatttt gggtattgat tcgcagcagc attaatggga tgaatcccgg
     3601 ctgtttcttt ttgatcattt tcgggcatgg ttaaggcggt cctatggctt ccaccaggat
     3661 gaaaatggcg atggttgtat gaagcgcaga aaaagtcatc ctgttttttt agcgaatgcg
     3721 agttttcgag caacagttta aaaactatag tgtcattcac tgctggcctg tcgatgcatt
     3781 tccacaagtt agagcacatg tatagaagga tatttagttt ttcggaatat gggcttatct
     3841 taaacggata aaaactactt ccatatgaac aaacttgttg cggaattctt cggcaccttc
     3901 tggttggtgc ttggcggttg tggcagcgcc gtactggctg ccgccattcc tgatttaggc
     3961 atcggcctca tgggtgtatc ccttgccttt ggcctcactg tggtcaccat cgcatacggc
     4021 ctcgggcata tttcaggggc gcatctcaat cctgcggtat ccattggtct ttggatgggc
     4081 ggcaggtttg cggctaagga tttgccaggc tatatcgtag cacaaattct gggtgcgata
     4141 gctgcggcag gcgtgttgta tgtgatagcc accggtaatg gtaccgatgc cataggggcc
     4201 ggttttgctg ccaatggata tggcgagcat tcacccggca aatacagcat gaatgctgca
     4261 ttggtaactg aagtggtaat gacctttatg ttcttgctgg tgattttggg ttcaactgac
     4321 aaacgtgcac cggccggatt tgcaggcctt gccattggtt tatgtctcac ccttatccat
     4381 ctgatcagta ttccagttac caatacctct gtcaaccccg cccgcagcat cagccaggca
     4441 ttgtttgtgg gaggatgggc attggagcaa ttgtggttgt tcattgtagc acccattgtt
     4501 ggtgcggcag ctgcaggcat cgtttacaaa atgttcgcat cagaacccaa ataaactccg
     4561 gtcgttagcg tgatgcatct atacaggtag cctggccaaa agccgggcta cttattttat
     4621 gggcttcagt tccacgatgc gattgtcccg caattccatc caaaccgctt tcggcagctg
     4681 caggctgtct gctatgcgcc aggcatcatc catcgaacgg gcctggttga aggtgcgacc
     4741 tgcataccat tcttctattt tggcattgga cagattggtg aagatgacag catcagcagg
     4801 aatgctactg gcaatttttt ctcccagctt tttctgcaaa tcatatggct gtccgctttg
     4861 gctgatactg ccgggttgat taatgaaaaa gtaaatgacc agcgagcagc ctgcagccag
     4921 tatgatccac cttttcccgg ctttgccggc cagccactcg gtccgcctga acgccagcca
     4981 gagaatcatc aacaggctca taaccatcca ggcaaattcg tgttcaagac tccagttgag
     5041 aaataccagg ttgtacacaa gcgtaatgcc aatggcaaaa tgaatccaat gatgtggtgc
     5101 tctttttgca gaggcagata aaaatgaaat gagtatcaat aagagcaaag gcccgtaacc
     5161 tgccagtaaa aagcgtaaga agattttgag tgaatgaccc attgtggatt gaccggctga
     5221 aacacttcgt tcggaaaacc gcgacagcca gtagccttct acctggtccc atcccaagtg
     5281 gcaggcaaac tgtgaaagga taagcaagat ggcggtgatt gcagcgaggc cggctactgc
     5341 aataaagagg aatgaa
//
LOCUS       DATIQF010000552         1734 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_175973,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000552 DATIQF010000000
VERSION     DATIQF010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1734
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175973"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..372)
                     /locus_tag="VLL95_09215"
     CDS             complement(<1..372)
                     /locus_tag="VLL95_09215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39082.1"
                     /translation="MEPGIGTRLQHTKYGPGVIVAVQHATWKISFIHHGILEIDKQDP
                     DLDEIIPENLAAPEETSDYTEQRLLKILRHWNGLGEVVPLGDRWRNGMMLLQPADKTL
                     KPKEVPVEQFFHKIVMLRDRLR"
     gene            451..1434
                     /locus_tag="VLL95_09220"
     CDS             451..1434
                     /locus_tag="VLL95_09220"
                     /inference="COORDINATES: protein motif:HMM:NF014336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc dependent phospholipase C family protein"
                     /protein_id="HSR39083.1"
                     /translation="MKTWSHIGKLLLVPALLLSQFTAHAWGFYGHRKINYMAVFLLPP
                     EMMLLYKSQIDFLSEHAVDADKRRYAVAAEAPRHYIDIDRYGTYPYPNLPRRWDSAVA
                     KFSEDTLQAHGIVPWWVQIMQRRLTEAFKERDQARILRLSADIGHYISDAHVPLHACS
                     NHNGQYSNQLGIHAFWESRVPELFAESNYDFLIGKAVYIRNPGSFIWDRVLESALAAD
                     SVLKVEAALSKQFPEDAKFSYEERMGKIQRQYSTAFSKAYETQLRGMIERRMRQSIFA
                     VASFWYTAWVDAGQPDLRYLVNKQFSATDEKEFNEMNAQWQKGKPLGKICD"
     gene            1513..>1734
                     /locus_tag="VLL95_09225"
     CDS             1513..>1734
                     /locus_tag="VLL95_09225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39084.1"
                     /translation="MSLHKFLLAAACSCMLCISANSQTVLLPFQYTWKFLDNGSNQGT
                     TWVQPGFADAAWSSGPGQLGYGDGDEATVV"
BASE COUNT          408 a          449 c          450 g          427 t
ORIGIN      
        1 ccgcagcctg tcccgcagca tcacgatctt atggaagaat tgttccaccg gaacttcttt
       61 gggcttcagg gttttgtcgg ccggttgcag cagcatcatc ccattgcgcc agcggtcgcc
      121 cagcggcact acttcgccca atccattcca atgtcggagt attttcagca ggcgttgctc
      181 tgtgtagtcg gaagtttctt ccggcgcagc caaattttcc ggaatgatct catccaaatc
      241 cggatcctgc ttgtcgattt ccaaaatgcc gtgatggata aatgagattt tccaggtagc
      301 atgctgcaca gccactatca cgccggggcc atacttggtg tgctgcagtc gggttcctat
      361 gccaggttcc ataatctgat gttttgcaca aagtaaaaat ttgccgatga aatctactgc
      421 gtcattgaat gctgttattt ttattctcgc ttgaaaacct ggagccacat agggaaatta
      481 ttgctggtac cggctttgct gctgtcgcag ttcacggcgc atgcctgggg tttttatggc
      541 catagaaaga tcaattacat ggcagtattt ctgctgccac ccgaaatgat gctgctgtac
      601 aaaagccaga tcgatttttt gagtgaacat gcggtagatg ccgacaagcg ccgttatgcg
      661 gtggcggctg aggcaccccg gcattacatc gacatcgacc gctatggtac atatccttat
      721 cccaacctgc cccgtcggtg ggacagcgcg gtcgccaaat tttcggaaga cacgctgcag
      781 gcccatggca ttgtgccgtg gtgggtgcag atcatgcaac gccggctgac ggaagctttt
      841 aaagaacgtg accaggcccg catactgcgc ctgagcgccg acattggtca ttacatcagc
      901 gatgcgcatg tgccgctgca tgcctgcagc aaccacaacg ggcaatacag caaccagctg
      961 ggcattcatg ccttttggga aagccgggtg cctgagttgt tcgccgaaag caactacgat
     1021 ttcctgatcg ggaaagccgt atacatcaga aatccgggtt cgttcatttg ggaccgggtg
     1081 ctggaaagtg cactggccgc tgactcggta ttgaaagtgg aagccgccct ttccaaacaa
     1141 tttccggagg atgcgaaatt ttcttacgaa gaaagaatgg gaaagatcca gcggcaatac
     1201 tccacggctt tttctaaggc ttacgaaacg cagctgcggg gcatgatcga acgccgcatg
     1261 cggcaaagca tttttgccgt ggccagcttt tggtacaccg cctgggtaga tgccggtcag
     1321 cccgatttgc gctacctcgt gaacaaacaa ttcagcgcaa cagatgaaaa agaattcaac
     1381 gagatgaatg cgcaatggca aaagggaaaa cccttgggaa agatctgcga ttagcggcca
     1441 gatagttcgg cattgattat gaattctcat gatcaatgtt taacttgtta attacaacca
     1501 atctgctctc ccatgtcact acacaaattc ctgcttgcgg cagcatgcag ttgcatgctt
     1561 tgcatttccg caaattccca gacggtttta ctcccttttc aatatacctg gaaattcctt
     1621 gacaatggct ccaaccaggg cactacctgg gtacagcccg gttttgccga tgctgcatgg
     1681 tccagcgggc cgggccagct gggctatggc gatggcgacg aggccacggt ggtg
//
LOCUS       DATIQF010000553         3655 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_297800,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000553 DATIQF010000000
VERSION     DATIQF010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3655
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297800"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(246..1442)
                     /locus_tag="VLL95_09230"
     CDS             complement(246..1442)
                     /locus_tag="VLL95_09230"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSR39085.1"
                     /translation="MEIPFDLVTFTNLAALVLGLTSGLVILYQGIKNNPTNLPLAFGQ
                     ITLSLAIWVNFLIVSKLLVHWPFMFRTGSLLALFYLPLPFLYVSFYVQKRTWRWYDFL
                     HFIPALVFLVDFWPIFILSNQEKLALIQKDLNVPNQYALLRESRFFPPGFHQTFRTIL
                     VSLYWLAQCLILSKWIKRQSKMSYEDRIWKNWMIVYLFFQAGLWIPFYLTFVLIDKSL
                     TYHMIYNVSAVWMVVSSFLLLLYPSLLYGYQPIKSNQKTNKTKPPKPAAVESATANDP
                     ENQKMEEVKKAVDHGLDNEALFLKPGLTINEFSQDIGIPVYQISKCITQYTGLGFIDF
                     INQKRIEYCVQKLDSGDWKHFKVEAIAQECGFNNRNSFTNAFKKFKGISPSEYKASLD
                     SVRASQ"
     gene            complement(1806..3053)
                     /locus_tag="VLL95_09235"
     CDS             complement(1806..3053)
                     /locus_tag="VLL95_09235"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HSR39086.1"
                     /translation="MKKIIIPIGIIGLVLGSHVSSFSQTDTKETEEKATKEKKEKKVD
                     MTILPVIAANPTVGVLFGVLPGFNWNMGTEADTRNSTALAGFYYTTNNQLFTSIRANA
                     FTKEDKFNLLTDLRFNLNSQPTYGLGSDINRPTIVGGDEEVSDNPYDKVPQNEMMAFN
                     NFRFYQTVQKRHKKTNLFYGIGYHLDIFWDIDDKQLDLSANPQQITHHYRYQTLKGLS
                     TERYTQSGLSANVTYDSRDNVVNPYTGQLAAISLRGFPEFLGSTTSASQLWVEYRKYF
                     NLVKSRPRNVLAFWTYGWFVTSGTSPYLALPAIGWDMFARSGRPYTQGRIRGEDLVYG
                     EAEWRFPLQKTKNKWGAVLFVNTSTASSRTENVDIFKNFVFGYGGGLRFMINEKKRVN
                     LGLDYGFGAHGAQGLFVNLNEYF"
BASE COUNT         1002 a          779 c          896 g          978 t
ORIGIN      
        1 atgcaaatgg gccagaaacc aggtatcatt gttttcggca atccggaaag tcattccgag
       61 actattatca gcatgttcgg atagcgtgct aaaactaacc ccggagcaga ccaatggttg
      121 gtgaaaggtg gccattcttg ggccaagatt ggcaggcaaa tcgatttttg aagaaatgaa
      181 aggcgaatgc cggaagcgcc gggaagagaa ttatgctgaa atggaatatt gctggcagca
      241 gcagatcatt gcgatgctct cacggaatca aggctcgctt tgtattcgga gggagaaatg
      301 cctttgaatt ttttgaaggc attggtaaaa gaattgcggt tgttgaagcc gcattcctgg
      361 gctatcgcct ccaccttgaa atgtttccag tcgcccgaat ccaacttttg cacgcaatac
      421 tcgatcctct tttgattgat aaaatcaatg aatcccaagc cggtatactg tgtgatgcat
      481 ttggatattt ggtagacagg aatgccgata tcctgggaaa attcattgat ggttaatccc
      541 ggtttcagaa aaagggcttc gttgtccagg ccatgatcca cggctttctt tacctcttcc
      601 atcttttggt tttcggggtc gttggcggta gcggattcaa cagcagccgg tttgggcggt
      661 ttggttttat tggttttttg attgctttta atgggctggt agccgtaaag caaagagggg
      721 tacagcagca gcaggaagga agaaaccacc atccacacgg cactaacgtt ataaatcatg
      781 tggtaggtca gcgacttatc aatcagaaca aaagtgagat agaacggaat ccaaaggcca
      841 gcctggaaaa acaggtaaac gatcatccaa tttttccaaa tccggtcttc gtacgacatt
      901 ttggattgcc gctttatcca tttactgagt atcaggcatt gcgccagcca atacaaactg
      961 acgaggatgg ttctgaatgt ctggtgaaaa cctgggggaa agaaacggct ttcccgcaaa
     1021 agcgcatatt ggtttgggac attcaggtct ttttggatca aagccagttt ctcctggttc
     1081 gacaatatga aaatgggcca gaagtcgacc aggaacacca gggctggaat aaaatgcagg
     1141 aaatcgtacc accgccaggt ccttttctgg acataaaaac tgacgtacaa aaaaggaagc
     1201 ggtagataga acaatgccag caggctacct gtgcggaaca tgaagggcca atggaccagc
     1261 agtttggaaa cgatcaggaa attgacccaa atggccaggg aaagggttat ttgaccaaag
     1321 gccagcggca ggttggtagg gttgtttttt attccctggt agaggataac caatccggag
     1381 gtgagcccca aaacgagggc agctaaattg gtaaaagtga caaggtcaaa gggtatctcc
     1441 atagcagcgt ttggctcact caattatcat ttcgcctatc acacaaattt gaaccggtta
     1501 ataaagcact cagtacaaag gaagggagaa atacccttaa aaatgattat cctttcgttt
     1561 tcagttattg ccatagttgg tgcagaaaac ccggctctaa acaagcctgc tatccatgtg
     1621 cgacgaaagg gattttgttt gagattgtca ggcggcaagc gttcttccgt taaacatggc
     1681 tgccctgcca acaccataaa cctggattgg tttaaaaaga aaggccggca ttattgccgg
     1741 cccttcttct attccattta tcgaggtcaa cttcggttac tcaaagttgg ctgaatgggt
     1801 gctgatcaga aatattcatt gaggtttaca aacaagcctt gggcgccatg agcgccgaag
     1861 ccataatcaa gacccaggtt caccctcttc ttttcattga tcataaagcg caaaccgccg
     1921 ccataaccaa acacgaaatt cttgaagatg tctacattct ctgttcggct gctggcggta
     1981 gaggtattta caaatagtac ggctccccac ttgttcttgg tcttttgcag gggaaagcgc
     2041 cattctgctt cgccatacac caggtcttcg ccacgaatgc ggccttgtgt ataaggcctg
     2101 cccgaacggg caaacatatc ccagccaatg gcaggcaatg ccaggtaggg tgaagtgcca
     2161 ctggtaacaa accacccgta ggtccagaaa gccaaaacat tgcgggggcg cgacttcacc
     2221 aggttgaagt atttgcggta ttcaacccac aactgcgaag cactggtggt gctgcctaaa
     2281 aattcgggaa aacctctcaa ggaaatagcc gccaattgtc cggtataggg gttcactaca
     2341 ttgtcgcggc tgtcgtaggt tacattggcc gaaagaccag actgcgtata cctttcggtg
     2401 ctcagtcctt tcagggtttg ataccggtag tgatgggtta tttgttgagg gttggcactg
     2461 aggtcgagtt gtttgtcgtc gatatcccag aagatgtcaa gatggtagcc gatgccataa
     2521 aacaggttgg ttttcttgtg tcttttctgc acagtttggt agaacctgaa attattgaag
     2581 gccatcattt cattctgggg cactttgtcg taggggttgt cagaaacctc ctcatcacct
     2641 cccacaatgg tggggcggtt gatatcggat ccaaggccat aggtgggctg cgaattcagg
     2701 ttaaacctta ggtctgtcag caggttaaat ttatcctctt ttgtaaaagc attggctcgt
     2761 atggaggtga aaagctggtt attagtagtg taataaaagc cggccaatgc ggtagagttt
     2821 cgggtatcgg cctcggtacc catattccag ttaaaaccgg gcaatacacc aaacagtacc
     2881 cctactgttg ggttggctgc tattaccggc aaaatggtca tgtctacttt tttttccttt
     2941 ttctccttgg tggctttttc ttcggtctcc ttggtatctg tttgtgaaaa ggaagacacg
     3001 tgtgatccaa gcaccaatcc gattatgcca atagggataa tgattttttt catagcattt
     3061 agtttgtggt taagtggcag gggatgatct tcaaaagtga atttagccga taatccctga
     3121 aaattgagaa ttctcgtttc aacattgggt acattctcaa tggagcatcc tgatttttgt
     3181 tgagataatg ggagcaaatt ttgtttaaga ttttgcggtg ctaaaatcct aattcatttg
     3241 gtgcaatgaa ttaagaaggt ttggacatta cggccaaaag tgaaattagg aggtactgta
     3301 tcactcgctt tgattttaca caccaataca atgtaatgtt tcaacgattg tttacaaaat
     3361 cactgcctac tatggcctta aacatttacc aggtggacag gcatgcgaaa aaatcaaagg
     3421 tcattcccat gaacttcagg cgagagccag gtgaaaacac ctggctctcg ccctgaaaag
     3481 ttgcctggga tgccaggggg gaacaataac tgcaaccgat ccaattgtaa gtgtactggc
     3541 accgggaaaa gtatagtttt tgggccggct ccaacttgtc aaacaggtct caaaccgcct
     3601 tagggttcac gtacacacta aaatgcagat accctttgcg cttacacctc ctaaa
//
LOCUS       DATIQF010000554         1696 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_175974,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000554 DATIQF010000000
VERSION     DATIQF010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1696
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175974"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..921
                     /locus_tag="VLL95_09240"
     CDS             <1..921
                     /locus_tag="VLL95_09240"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF003998.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HSR39087.1"
                     /translation="QATGVKLLWGTANLFSHKRYMNGASTNPDFAVVAHAGAQVKAAL
                     DATIALGGENYVFWGGREGYMSLLNTNMKREKEHLARFLHMAKDYARKNGFKGTFFIE
                     PKPCEPSKHQYDYDAETVIGFLRQYDLIDDFKLNIEVNHATLAGHTFQHELQVAADAG
                     LLGSIDANRGDYQNGWDTDQFPNNLNELTEAMLVILEAGGFGGGGINFDAKIRRNSTD
                     AADLFYAHIGGMDTFARALLIADKVLTSSPYKKMRAERYASFDSGNGAAFEEGKLSLE
                     DLRHLAADAGEPAVTSGRQELYELILNRAI"
     gene            993..>1696
                     /locus_tag="VLL95_09245"
     CDS             993..>1696
                     /locus_tag="VLL95_09245"
                     /inference="COORDINATES: protein motif:HMM:NF012589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY family carbohydrate kinase"
                     /protein_id="HSR39088.1"
                     /translation="MLLLGIDLGTSAIKVSVVDAHTQKAVASAQYPETESPIIALQTG
                     WAEQDPQQWWHDIRQCILKCNASERYDPRQIAAIGISYQMHGLVIVDKNGTPLRHSII
                     WCDSRAVPYGQAAFEKIGEQTCLETLLNSPGNFTAAKLAWVKENEPALFEKLHKVMLP
                     GDFIAYQFTGQFTTTPSALSEGILWDFSKNDIANSVMDCFGFDSSIIPDIQDVFSSHG
                     ALKEDLARELNLTAGIP"
BASE COUNT          447 a          448 c          443 g          358 t
ORIGIN      
        1 caggccaccg gcgtgaagtt gttatggggc acagccaatt tattttcaca caagcgctat
       61 atgaacggag ccagcaccaa ccccgatttt gcagtggtgg ctcatgccgg tgcccaggta
      121 aaagcagcgc tggatgccac catcgcgttg ggtggcgaga attatgtgtt ctggggtggt
      181 agagaaggat acatgagttt gctcaacacc aacatgaagc gggaaaaaga acacctggcc
      241 cgctttctgc acatggcaaa agattatgcc cgtaaaaacg gtttcaaagg cacattcttt
      301 attgagccca aaccctgcga acccagcaag caccagtacg attatgatgc agaaaccgtg
      361 atcggtttcc tgcgtcagta tgatctgatt gacgatttca aactgaacat tgaagtgaac
      421 catgctacac tggcgggtca tactttccag cacgaattgc aggtggcggc cgatgcagga
      481 ttgttgggca gcattgatgc caatcgcggc gactaccaga acggatggga taccgatcaa
      541 ttccccaaca acctcaacga actcaccgaa gccatgctcg tcatcctgga agccggtggc
      601 tttggcggtg gcggcatcaa tttcgacgcg aagatccgcc gcaactccac tgatgctgcc
      661 gatcttttct atgcacacat aggcggcatg gacacgtttg cccgggcctt gctgattgct
      721 gacaaggtgc ttacttcgag cccctataaa aaaatgcggg ccgaacgcta tgccagcttc
      781 gacagcggca atggggcggc ctttgaagag ggcaaacttt cactggaaga cctgcgccac
      841 ctggcagccg atgccggcga accagccgta accagcggcc ggcaggagtt gtacgaattg
      901 atcctcaacc gagcgatctg atgccagaga atgctgcaga aaaatgtagc ggctataaca
      961 actcatttgt attcgaataa aataacagga tcatgttgct gctgggaatt gatttgggca
     1021 cgtcagctat caaggtatcg gtagtggatg cgcatacgca aaaagcggtg gcatccgccc
     1081 agtatccaga aacagaatcg cccatcatag cgctgcaaac cggctgggcc gaacaggatc
     1141 cgcagcaatg gtggcacgac atcaggcaat gcattttaaa atgcaatgcc agtgagcgat
     1201 acgatccccg gcaaattgca gccatcggca tcagctacca gatgcacggc ctcgtgatcg
     1261 ttgataaaaa cggaactcca cttcgccaca gcatcatttg gtgcgacagc cgggctgtgc
     1321 cttacgggca ggcagctttt gaaaagatag gcgaacaaac ctgcctggaa acattgctca
     1381 actcgcctgg caatttcacc gccgccaaac tggcctgggt gaaagaaaac gaacctgcac
     1441 tgtttgaaaa gctgcacaaa gtgatgctgc cgggcgattt catcgcttac cagtttaccg
     1501 gccagttcac caccacgccc tctgcccttt ccgaaggcat tctctgggac ttcagcaaga
     1561 atgatattgc caacagcgtg atggattgtt ttggttttga cagcagcatc attccagata
     1621 tacaggatgt cttcagcagc catggtgcac tcaaagaaga cctggcccgg gaactgaatt
     1681 tgacggcagg catccc
//
LOCUS       DATIQF010000555         1750 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_84836, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000555 DATIQF010000000
VERSION     DATIQF010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84836"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..402)
                     /locus_tag="VLL95_09250"
     CDS             complement(<1..402)
                     /locus_tag="VLL95_09250"
                     /inference="COORDINATES: protein motif:HMM:NF019268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HSR39089.1"
                     /translation="MLQKFVAMAMVCLTTTLSFGQEDSTKEEEKSPLKITGFADVYYR
                     YDFAKTAANNKTSFTNSHNSFELGMASVKLEKSFGKVGVVADLGFGQRAKEFAYNDAG
                     ITQAIKQLFLTYAASEKLTFTAGSFATHVGYE"
     gene            complement(653..>1750)
                     /locus_tag="VLL95_09255"
     CDS             complement(653..>1750)
                     /locus_tag="VLL95_09255"
                     /inference="COORDINATES: protein motif:HMM:TIGR00836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HSR39090.1"
                     /translation="GGFIGNPSTHLFFKDVMSGEPWSLAPTIPKPLFAFFQLMFSIIT
                     PGLVVGAVAERIRFTAYILFIALFSLLVYAPLAHWTWHPEGFLFKMGVLDFAGGTVVH
                     ISAGCAALAGALVLKPRKSKLLQEEVPPANIPYVLIGTGLLWFGWFGFNAGSALGANS
                     LAVSAFATTNTAAAAAGLSWMFFDVLRGKKPSVLGFCIGAVVGLVAITPAAGFVAVPQ
                     SIFIGVVAAIISNLAVHFKTKSSLDDTLDVFPCHGVGGMVGMLMTGVFATKTVNALGA
                     DGLAYGNSSFFFTQLKGMAIAVTFSFVMSYLIFKFIDLVLPLRVSSEDEEMGLDASQH
                     NEKYVQGTLLVHTNGKMTEKEVTLLSSELED"
BASE COUNT          467 a          422 c          461 g          400 t
ORIGIN      
        1 ttcataaccc acatgcgtgg cgaaactgcc ggcagtgaag gtcagttttt cggatgcagc
       61 ataggtaaga aaaagctgct taatggcttg tgtaatgcct gcatcattgt aagcaaattc
      121 cttggcgcgt tgaccaaaac cgaggtctgc taccacgccc actttgccaa aacttttttc
      181 aagtttcacc gaagccatgc ccagctcaaa agagttatgt gaattcgtaa aacttgtttt
      241 gttattggct gcggttttgg cgaagtcata gcgataatac acatcggcaa aaccggttat
      301 tttcaagggg ctcttttctt cttcttttgt ggaatcttcc tgaccgaatg acaaggtggt
      361 agtgaggcat accatagcca tagctacaaa tttttgtaac attgcaatgc atttttaatg
      421 tgaatgaagg ggtacagtac aggctatgcc agtagcctgg gcacactgta ccttttcttt
      481 tgcgcaccgg tgccgtcagt gtcattgctt tcaacctgcg ccagtgccag ctggcacaag
      541 ttgaaaggga agtggtgaga gtgaagagga aagctggttt taattgaaag aattgaagaa
      601 gggtggcagc tggcgccggc tttggccagg ctggctgcca ctaaatcatt tgtcagtctt
      661 ccagttcaga agaaagcagg gtcacttctt tttcagtcat tttaccattg gtatgtacca
      721 acagcgtgcc ctgcacatac ttttcgttgt gctgcgaggc atcgaggccc atttcttcgt
      781 cttcagagct gacacgcaaa ggcaatacca ggtcaatgaa cttgaagatg aggtaagaca
      841 taacgaagct gaatgtcact gcaatggcca tgcctttcaa ttgggtaaag aagaaactgc
      901 tgttgccata ggccaaacca tcagcgccca gtgcattcac tgttttggtg gcgaaaacgc
      961 ctgtcatcag catgcccacc atgcctccta cgccgtggca ggggaaaaca tccagcgtat
     1021 catcaagact gctcttggtt ttaaaatgta ccgcaaggtt ggagatgatg gccgccacta
     1081 caccgatgaa gatgctttgg ggaaccgcta caaaaccggc ggcaggggta atggctacca
     1141 atcccacaac ggcaccaata cagaatccga gaacggaagg ctttttacca cgcagtacat
     1201 caaagaacat ccagctcaaa ccggcagcag cagcggcggt attcgtggtg gcaaaagccg
     1261 acacagccag gctgttggcg cccaaggccg aaccggcatt gaaaccaaac cagccaaacc
     1321 acaacaggcc ggtgccaatc agtacataag ggatgttggc aggaggtact tcttcctgca
     1381 gcagcttgct tttgcgcggc ttcaatacca gggcgcctgc gagggctgca cagccggcag
     1441 aaatatgcac cacggtgcca ccggcaaagt caagtacgcc cattttgaac aggaagcctt
     1501 ccggatgcca ggtccagtgg gccagtggtg cgtacaccag caggctgaac agcgcaatga
     1561 agagaatgta agcggtgaat cgtatgcgtt cagctacggc gcctaccacc agcccggggg
     1621 tgatgatgga aaacatgagt tggaagaagg cgaagagtgg ttttggaatg gtgggggcca
     1681 gcgaccaggg ctcacccgac attacatctt taaaaaacaa atgggtggat ggattgccaa
     1741 tgaagccgcc
//
LOCUS       DATIQF010000556         1622 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_267515,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000556 DATIQF010000000
VERSION     DATIQF010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267515"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(225..298)
                     /locus_tag="VLL95_09260"
     tRNA            complement(225..298)
                     /locus_tag="VLL95_09260"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(262..264),aa:Arg,seq:acg)
     gene            423..1319
                     /locus_tag="VLL95_09265"
     CDS             423..1319
                     /locus_tag="VLL95_09265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39091.1"
                     /translation="MSNNPDESHGTQGLPPRDIQAENDFLKLKMMAEWGASFGGNADP
                     LSPELENQFLKQVQAFETAYHAASPGTFSDTVGRPPYLPWQEVQQLPYAEQEALVNEV
                     LAFYQQNGVDVCFEFEYPPAVKYQFLVEELPGRPNYFGVVPGMMVGVIYEEYHPNHGA
                     VIEATTDDFMEGLVHLDIEQLKLTLSPVQVLPDGPYPTEILLKALADKFQTIAALDDL
                     EYSIMQTSYDLSKETEGENETIAGLGYSEGLVKFTVVKKDGSSRPISGPFKFYFQFEY
                     GCWSIMYIIFQGMGYPLPASQS"
     gene            complement(1411..>1622)
                     /locus_tag="VLL95_09270"
     CDS             complement(1411..>1622)
                     /locus_tag="VLL95_09270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39092.1"
                     /translation="IPMSPDQVMKKRYGIFIHQSQKDMVPFQGSDNREFWQRAEERNA
                     NTANLYGKLGLTQYAAMEAFVRWHF"
BASE COUNT          417 a          351 c          417 g          437 t
ORIGIN      
        1 ggatttgaaa gggaagttaa tgaaccgggg tcgacaaagc aatctggagg gaacaaatcc
       61 acccggtttt cgggaagggg agaaagggaa tggatagtcg cccagaattg gaattgcatg
      121 gagcaatcag gggcagggag atgatgtttc ctgcggctta ggcaaatttt aggcaaataa
      181 aaaagcggtt atgaattttt gttcataacc gcttgatttt caagtgaccg cgtcaggatt
      241 caaacctgaa accttctgat ccgtagtcag atgctctatt cagttgagct acgcagccat
      301 tccgtttttt ggacgggctg caaaaatagg gtaagccatg aattggccaa aaatactacc
      361 tgcttttttc tgtttttgtg ccggttatta atagtacctt actggtaact aattcccagg
      421 ttatgtccaa caatcctgat gaaagccatg gtacacaagg cttgcctccc cgcgacatac
      481 aggcagaaaa tgatttctta aaattgaaaa tgatggcaga gtggggggct tcttttggtg
      541 gcaatgctga tcctctcagc cctgaattgg aaaaccaatt tctgaagcag gtacaagcct
      601 ttgaaactgc ttatcatgct gcttcccctg gcactttttc cgacacggta ggccggccgc
      661 cttatttgcc atggcaggag gtgcagcaac ttccctatgc cgagcaggaa gccctggtaa
      721 acgaagtgtt ggcattttac cagcaaaatg gggtggatgt ttgttttgaa ttcgaatatc
      781 ctcccgctgt gaaataccag ttcctggtgg aagagctgcc aggtcggccc aattatttcg
      841 gtgtggtacc aggcatgatg gtgggcgtta tttacgagga atatcatccc aatcatggag
      901 cggtgataga ggcaactacc gacgatttta tggaaggact tgtccacctc gatattgagc
      961 aattgaaact cacgctttcc ccggtgcagg ttttgcccga tgggccttat cccaccgaaa
     1021 ttctattaaa agccctcgcc gacaaattcc agaccatcgc ggcattggat gatcttgaat
     1081 acagcatcat gcaaaccagt tacgatttgt cgaaggaaac agagggggag aatgaaacca
     1141 ttgcagggtt gggctattct gaagggctgg tgaaattcac ggtggtcaag aaggatggca
     1201 gcagccggcc tatcagcggc ccttttaaat tctatttcca gtttgaatat ggttgctggt
     1261 ccattatgta catcattttc cagggaatgg ggtatccttt gccggcatca caatcctgaa
     1321 tgatcggcaa ccggggtaaa acctggacca acaaaaaatc ctgtgcgatg tgtgccgcac
     1381 aggattttta tttttagcga ttacagattg ctagaaatgc cagcgaacaa atgcctccat
     1441 ggcggcatac tgggtaaggc ccaatttgcc atacaagttg gccgtgttgg cattcctttc
     1501 ttcggctctt tgccagaatt cgcggttgtc gctgccctgg aaaggcacca tgtctttttg
     1561 tgattggtga atgaaaatgc cgtaacgctt tttcattacc tggtcggggc tcattgggat
     1621 gg
//
LOCUS       DATIQF010000557         1663 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_130605,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000557 DATIQF010000000
VERSION     DATIQF010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130605"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..272)
                     /locus_tag="VLL95_09275"
     CDS             complement(<1..272)
                     /locus_tag="VLL95_09275"
                     /inference="COORDINATES: protein motif:HMM:NF012592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HSR39093.1"
                     /translation="MDKAEKKRIIISPVTRIEGHAKITIQLNDGGEVSNALFHVNEFR
                     GFEKFCEGRMYTEMPTITPRICGICPVSHTIASAKACEMIQGIQPAP"
     gene            complement(265..807)
                     /locus_tag="VLL95_09280"
     CDS             complement(265..807)
                     /locus_tag="VLL95_09280"
                     /inference="COORDINATES: protein motif:HMM:NF013242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39094.1"
                     /translation="MAKKKLATVWLGGCSGCHMSLLDIDERILEVAKLADIVKCPVVD
                     GKELPEVDITLVEGSITSDEHYREIVHIRKQSKMVVAFGDCAVMTNITGMRNYFELED
                     VFDTAYKNAVSNDQEGVVPSHPALLRLHDKVVPLQQVVPVDFVIPGCPPSADTIFYVL
                     NELLNDREPDLAAMKKLKYG"
     gene            complement(811..1518)
                     /locus_tag="VLL95_09285"
     CDS             complement(811..1518)
                     /locus_tag="VLL95_09285"
                     /inference="COORDINATES: protein motif:HMM:NF024900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HSR39095.1"
                     /translation="MSSINITVNGKALETDPGKTILQACEENGIEILKMCHLEGITDV
                     GACRLCLVEVEGVPKLLSACTTKVTSNMIIRTDTDKIKHYQRITAELFFAERNHVCSV
                     CVANGNCELQELGYKVGLDHIRYPHLHPACNVDTSHATFVIDHNRCIMCTRCVRVCAE
                     VEGAYNWDVMNRGFQVRIISDFNSPWGESVTCTSCGKCMHACPTGAIWPKAIVQGQLR
                     KHPEMIGELMEKRKMKL"
BASE COUNT          344 a          464 c          412 g          443 t
ORIGIN      
        1 ggtgccggct gtatgccttg tatcatttcg caggccttgg cactggcaat ggtgtggctc
       61 accgggcaaa tgccgcatat gcgtggcgtg atggtgggca tttcggtgta catcctgcct
      121 tcgcaaaact tttcgaagcc gcgaaactca ttcacatgga acagggcatt gctcacctca
      181 ccaccatcgt tgagttgtat ggttattttc gcatgccctt caatccgcgt taccggactg
      241 atgatgatcc ttttcttttc cgccttatcc atatttcagt tttttcattg cagctaaatc
      301 tggttcccgg tcgttcagca gttcgttcag cacatagaaa atagtatcgg cgctgggcgg
      361 acacccgggg atcacaaaat caacgggcac cacttgttgc agcggcacta ctttgtcgtg
      421 cagcctcagc aaggcagggt gcgatggcac cactccttcc tggtcgttgc tcaccgcgtt
      481 tttgtaggcg gtatcaaaca cgtcctccag ttcaaagtag ttgcgcatgc cggtgatgtt
      541 ggtcataacg gcacaatcgc caaaagccac caccattttg gattgcttgc ggatgtgaac
      601 gatctcccgg taatgttcat cgctggtaat ggaaccttcc accagcgtta tgtccacttc
      661 gggcaattcc ttgccatcca ccaccgggca tttcacgatg tcggccagtt tggccacttc
      721 caaaatgcgt tcgtctatat cgagcagcga catgtggcag cccgagcagc ctcccagcca
      781 taccgttgcc agtttctttt ttgccatagc ctacagtttc atttttcgtt tttccatcag
      841 ttcgccaatc atttccgggt gcttgcgcaa ctgcccctgc acaatggctt tgggccagat
      901 ggcaccggta ggacaggcat gcatgcattt gccgcaggaa gtgcaagtca ccgattcgcc
      961 ccagggtgaa ttgaaatcgg aaatgatgcg tacctggaat ccgcggttca tcacgtccca
     1021 gttgtaagcg ccttccactt cggcacatac ccgcacacaa cgggtgcaca tgatgcagcg
     1081 gttgtgatct atcacgaacg tggcatgcga agtatcgacg ttgcaggccg ggtgcaaatg
     1141 cgggtaccgg atgtggtcca aacccacttt gtatcccagc tcctgcagct cgcaattacc
     1201 attggccaca cacaccgaac aaacgtggtt gcgttctgca aaaaacaatt cggcggtgat
     1261 gcgctggtag tgtttgatct tatccgtatc ggtccggatg atcatgttgg aagtcacttt
     1321 ggtggtgcag gcgctcagca gtttgggcac gccttccact tccaccaaac agagacggca
     1381 ggcgcccaca tcggtgatgc cttcgaggtg acacatcttc agaatttcaa tgccattttc
     1441 ctcgcatgcc tgcaggatgg ttttgccggg atcagtctcc aacgccttcc cattcaccgt
     1501 gatatttatg ctgctcatac ccaatcctcc atgtttggtt gagtaatcag ttcttcatgt
     1561 ttcttaatgc ggccttcgta ttcctgcctg aagtggcgca gcgtactcag caaggggttg
     1621 ggtgccgaag cgcccagtcc gcataaactc gtttccttta cgt
//
LOCUS       DATIQF010000558         2008 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_39167, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000558 DATIQF010000000
VERSION     DATIQF010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39167"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..453
                     /locus_tag="VLL95_09290"
     CDS             <1..453
                     /locus_tag="VLL95_09290"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSR39096.1"
                     /translation="ADILLMYAEAKIELNELDATVLNAINAVRIRAGQPAAALGSQAA
                     MRQLVRRERVVEFGGEGLRLFDLRRWDIYEAANSLPIVGAALDPAVPPATPTFDQNDI
                     PNYTSSIAQRIKFRNQTRNNANSRFKLWPIPQFEIDVNPKITQNPGWQ"
     gene            642..1835
                     /locus_tag="VLL95_09295"
     CDS             642..1835
                     /locus_tag="VLL95_09295"
                     /inference="COORDINATES: protein motif:HMM:NF014675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 10 glycosylhydrolase"
                     /protein_id="HSR39097.1"
                     /translation="MKKKNIRSFYALIVAGVLCSLTLLACSKNGGSSPGTTPPPPPPP
                     PPPPPGPVWNPNAIRGVWITTTASTVLDSRENIRQAVLTCKQSGINNIFMVVYNNGRT
                     TYPSETMNKVIGVPILEKYSGRDPLQEMIEEAEKEKIKVHAWFEYGFASSYNASGGPI
                     IAAKPHWASKDINGAITTKNGFEWLNPFHPEVQDFVMSLFKEVATKYNVAGVQGDDRL
                     PALPSNGGYDTYTVNLYKSENGGAEPPTTFSNTSWINWRSAKLSQFLKKLYTEMKTLK
                     PGIQVTLSPSPHPWGKTEYLQDWPSWVDSGWVDVVIPQVYRYDLPAYNSTLAQQKTYF
                     KSGVVKFYPGVLLRVGSYVASADFLSQMVSNNRMQGFDGEVFFFYEGLKERTSWFQGT
                     YPLIK"
BASE COUNT          537 a          506 c          511 g          454 t
ORIGIN      
        1 gccgacattt tgctgatgta tgctgaagcg aaaattgagt tgaacgaact ggacgcgacc
       61 gtactcaatg ctattaatgc ggtgcgcata cgtgcaggcc agcctgcagc agccctgggt
      121 agccaggcag ccatgcgcca attggtgcgc agggaaaggg tggtagaatt tggtggtgaa
      181 ggtctgcgtt tgttcgacct gcgcagatgg gacatttacg aagccgctaa cagcctcccc
      241 attgttggtg ccgctcttga tcctgcagta ccacctgcaa cgcccacctt cgatcaaaat
      301 gatatcccca attacaccag cagcattgcc cagcggatca agttcaggaa ccaaaccagg
      361 aataatgcca atagcaggtt caagctttgg cccattcccc agttcgaaat agatgtgaat
      421 cccaagatca cccagaatcc gggatggcaa taagttgaag ctggcacggc aggaaaactg
      481 ctttgccaca gcatgttacg ttgattgatt tttctgataa gctctgcacc ttcgtggtgc
      541 agagctgtcg gaaaaaaaag ccacacctca acactggaga taagtgcaaa aaggagctgg
      601 cagcgatttg ataatagtac aggtagaatc tgatggggcc tatgaaaaag aagaacatac
      661 gatcatttta tgctttgata gtagcaggtg tgctgtgcag cttaacccta ttggcgtgca
      721 gcaagaacgg cggaagcagc cctggcacta cgccaccacc tccgccacct ccaccacctc
      781 ctcctcccgg gcccgtttgg aaccccaatg ccattcgagg cgtgtggatc accactactg
      841 ccagtaccgt tttggatagc cgcgaaaaca tccggcaggc agtgctcacc tgcaagcaat
      901 cgggcatcaa caacattttc atggtggtgt acaacaatgg acgcaccact taccccagcg
      961 aaaccatgaa caaggtgatt ggggtgccga tcctggagaa gtactccggt cgtgatccat
     1021 tgcaggaaat gatagaagaa gcggagaaag aaaagatcaa ggtgcacgcc tggtttgaat
     1081 atggttttgc ctcttcttac aatgccagcg gtggtcccat cattgctgcc aaaccgcatt
     1141 gggccagcaa agacatcaac ggtgccatca ccaccaagaa tggctttgaa tggctgaatc
     1201 catttcaccc ggaagtacag gattttgtaa tgtccctgtt caaggaagta gccactaaat
     1261 acaatgtggc cggtgttcaa ggtgatgatc gtttgccggc actgccttca aacggtggtt
     1321 acgatacgta taccgtgaat ttgtacaagt ctgaaaatgg aggggcggaa cctcctacca
     1381 ccttcagcaa cacctcctgg attaactggc gttctgccaa actcagccag ttcctgaaga
     1441 agttgtatac agaaatgaaa acgctcaagc caggcatcca ggttacactg tcacccagcc
     1501 cacatccctg gggcaaaaca gaatacctgc aagactggcc cagttgggtt gacagcggat
     1561 gggtagacgt ggtgatccca caggtttacc gctatgacct gcccgcgtat aattccactt
     1621 tggcgcagca aaaaacatat ttcaaaagcg gcgtggtgaa gttttaccct ggtgtattgc
     1681 tgcgggtagg ctcctatgtg gcatccgccg acttcctgag ccaaatggtg agcaacaacc
     1741 gcatgcaggg atttgatgga gaggtctttt tcttctacga aggactgaaa gaacgaacaa
     1801 gttggttcca gggaacttat cctttgatta agtaagcact ggtttagcat aaaatcatga
     1861 caaccggcgg agctcaacag cgcaacaaca gccttgatgc cttgaggggt attgccatac
     1921 tgcttatggt attgagcgga agcattgcct ttggaggtgt actgcctgca tggatgtatc
     1981 atgcacaggt gccgcctccc ttgcacaa
//
LOCUS       DATIQF010000559         1755 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_39194, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000559 DATIQF010000000
VERSION     DATIQF010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1755
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39194"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..786)
                     /locus_tag="VLL95_09300"
     CDS             complement(<1..786)
                     /locus_tag="VLL95_09300"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HSR39098.1"
                     /translation="MKFGRIDTSLLANTDMSLPPEPSSNAAVLGAFKAASPHIYLGCT
                     QWKCDAWLGKIYPENIRDNEILEAYIRQFNCIEMNAMHYRIFPPATVAKWAAKAVDRD
                     FKFCPKFPQSISHYSNFSNAGLQTEQFLESLAPLGVHLGPSFLQVSDGFTTSNAVVLL
                     PYLQALAERIPVFLEVRHEQWFSVSQMQQTASLLAERGIGWVITDAPGRRDVCHMHLT
                     TKTAFIRFLGNNLHPTDFTRIDAWIQRIKYWLDNGLESLYFFMH"
     gene            832..>1755
                     /locus_tag="VLL95_09305"
     CDS             832..>1755
                     /locus_tag="VLL95_09305"
                     /inference="COORDINATES: protein motif:HMM:NF018743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1343 domain-containing protein"
                     /protein_id="HSR39099.1"
                     /translation="MQQPLSGIDRVDSFPLWLKDARLALVTNDAARNVSGRLSRQVLL
                     DSDFSLVKLFSPEHGIDVQGADGQEQLSRKDTATGLPVVSLYGDQMQPSQQDLQDIDA
                     VLFDIPDIGCRFYTYLWTMTHVMEACSRYHKPLVILDRPNPTGGNLDKAEGPMLEEDT
                     CQSFIGRWRIPIRHCCTLGELAQYFNHSRRLQVDLTIIKCSGWEGRSSWLQHPEWFYP
                     TSPAIRQIETACIYPGTAFWEGVNLHDGRDTGYPFRWFGAPWINDSLFDWLAHHPLPG
                     LAANPLLLHPANGKYKNSLCVGGLLSIVDEEK"
BASE COUNT          418 a          429 c          466 g          442 t
ORIGIN      
        1 atgcatgaag aaatacagcg attcaagccc attatccaac cagtatttga tgcgttgtat
       61 ccaggcatca atgcgggtga aatcggtggg gtgcaggtta ttgccgagga aacgaataaa
      121 agcggttttg gtggtgaggt gcatgtgaca cacatccctg cggccgggcg catcggttat
      181 tacccagcca ataccacgtt ctgcaagcaa tgaagcggtt tgctgcattt gcgaaacgct
      241 gaaccattgc tcatgccgca cttccaggaa aaccgggatg cgctcagcca gggcttgcag
      301 gtatggcagc agcacaactg cgttggacgt ggtgaagcca tcgctcacct gcaaaaacga
      361 tgggcccagg tgaacaccca gtggcgccag gctttccagg aactgttcgg tttgaaggcc
      421 cgcattcgaa aagttgctgt agtggctgat gctttgcgga aacttggggc aaaatttgaa
      481 atccctgtcc actgctttcg cggcccattt ggccactgtg gccggaggaa atatccggta
      541 atgcatggca ttcatttcga tgcagttgaa ctgcctgata taggcttcca gtatttcatt
      601 gtccctgatg ttctccgggt aaatttttcc cagccaggca tcacacttcc attgggtaca
      661 gcccaggtaa atgtggggag aggccgcttt gaaagcaccc aatacagccg cgtttgacga
      721 aggctctggt ggcaggctca tgtctgtgtt ggccagcagg ctggtatcaa tgcgtccgaa
      781 tttcatgtct gcgaatatct ttagattcgg cttacatcaa atacatcctg catgcaacag
      841 ccattaagcg gtattgaccg ggtcgacagt tttccattat ggctgaaaga tgcacgcctc
      901 gccctggtaa ccaatgatgc ggccaggaat gtgtcgggcc ggctttcgag gcaggtattg
      961 ctggacagtg atttttccct ggtcaaattg ttttcgccag aacatggcat agatgtacaa
     1021 ggcgcagacg gccaggagca actaagcaga aaggataccg ccaccggttt acccgttgtc
     1081 agtttgtatg gcgatcaaat gcagccttcg cagcaggact tacaggatat tgatgccgtt
     1141 ctttttgaca tacccgatat aggctgtcgc ttttatacct acctgtggac aatgacccat
     1201 gtgatggaag cctgctcacg atatcataaa ccattggtga tattggaccg gcccaacccc
     1261 accgggggca acctcgacaa ggccgaaggg ccaatgttgg aagaagatac ctgccagtca
     1321 tttattggca ggtggcgcat tcccatcagg cactgttgca cattgggtga actggcacag
     1381 tatttcaacc acagccggcg gctgcaggtt gaccttacca ttataaaatg cagtggttgg
     1441 gaaggccgct cctcatggtt gcaacatcct gaatggtttt accctacttc acctgccatt
     1501 cggcaaattg aaacggcatg catttatcct ggcaccgcat tttgggaggg agtcaacctg
     1561 catgacggac gagataccgg ctatcccttc cggtggtttg gcgctccctg gatcaatgat
     1621 tcgttgtttg attggttagc acatcatcct ttgccaggtc ttgcagcaaa cccgttgtta
     1681 cttcatccgg cgaatggcaa atacaagaat agcctttgcg ttggtggatt gttgtctata
     1741 gttgatgagg aaaaa
//
LOCUS       DATIQF010000560         2539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_84945, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000560 DATIQF010000000
VERSION     DATIQF010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2539
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84945"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..659)
                     /locus_tag="VLL95_09310"
     CDS             complement(<1..659)
                     /locus_tag="VLL95_09310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SWIM zinc finger family protein"
                     /protein_id="HSR39100.1"
                     /translation="MSLPFYIKHIYNNASEEVIKRGKRIHAAGQLDLLEHNPILETIG
                     FRVKDDMYNSWYKVKIENYSNTKSLTLRCTCPYNLTEVCRHKAAALMQLQDMSEQGLL
                     GGVAMKYNQAHTLIKIRTIDLKMIRMLAGNENYEAAEEILRTHSVTITSAANEKVEAE
                     LNMEADTFKLVIRKNDERYFDTSCNCHDTDHILCRHKTALFLQLLNAYGSNYFDSIRN
                     Y"
     regulatory      903..1108
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            1234..>2539
                     /locus_tag="VLL95_09315"
     CDS             1234..>2539
                     /locus_tag="VLL95_09315"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSR39101.1"
                     /translation="MSRTFFLVGAAVMLALTAFSQSTDSTKTAVLDEVTVTANKIQQK
                     QSQTGKVVTVINKAAIEKSQGKTLGQLLNEQAGLTINGALNNLGTNQGVYMRGANIGR
                     TLILVDGVPAYDPSFINGETDLNFFSIANIERIEIARGAQSTLYGSDAIAGVINIITN
                     KSDVTKPVQGNVGAAYGSFNTFRGNAQVYGKTKTLDYSLRYAKLRSDGFSSAHDKSGN
                     KNFDDDGYNGDAVQATLNVKASNRFEIKPYFQYSRYKTELDNGAFTDDKDYTNTNTNK
                     LAGTRLQYKTASVQIVGHYMYGENERNYRDDSTDVPGFVKYSTNDFAGKSHFAELYAN
                     VQLAKGWNLLAGADFRQASMNSRYFSISSFGPYTDAFADTSLRQGSVYASLMYQHKNW
                     NLEGGIRWNNHQRYGNNATFTFNPSYSINQQWRVFGSIASGFK"
BASE COUNT          673 a          660 c          624 g          582 t
ORIGIN      
        1 tcgtagttgc gaatgctgtc gaaatagttg gaaccatagg cattcagcaa ttgcaggaac
       61 aacgctgttt tgtgtcggca caaaatatgg tcagtgtcgt ggcaattaca actggtatca
      121 aagtagcgtt catcgttttt acgaatcacc aacttgaaag tatcggcttc catgttcaac
      181 tcggcttcca ctttttcatt ggcagcactg gtgatggtga cagaatgtgt tcgcaggatt
      241 tcttccgcgg cttcgtaatt ctcattgccg gccagcatcc tgatcatctt cagatcaatg
      301 gtgcggatct tgatgagtgt gtgggcctgg ttgtatttca tggccacacc acccagcagt
      361 ccctgttcgc tcatgtcctg cagttgcatc agggcagccg ctttgtgccg gcacacttct
      421 gtgaggttgt aggggcaggt gcagcgaagc gtcagcgatt tggtgttgga atagttttca
      481 atcttcacct tgtaccagct gttgtacata tcatccttca ccctgaaccc aatggtttcg
      541 aggatggggt tgtgttccag caaatccaat tgccccgccg catgaatgcg cttgcctcgt
      601 ttaatgactt cttcgctggc gttgttgtag atgtgtttga tgtaaaacgg taacgacata
      661 attgcttgct cctctgtatc gggtgttgga tgttgccctt gttcagcctg caggttcatg
      721 gaaacacaag gctccatttt tcgcaaaaca atccgccaag ggcaatctgc aaaagtaacg
      781 gaaaagagag gggataaaca aaagaggcgc tgttaacgat ctcccaaccc gtgcccgcct
      841 gaaagggacc caggtcaaca aatggttgaa agtttttttt ggcgattcgg gttccggttc
      901 aacaaatttg cattgcaact ggtccccgtg ccgcagcgcc ggggttaaaa gggaagtccg
      961 gtgaaaggcc ggcgctatcc ccgtagctgt aaacccccgc cccccaaaag gggcaaataa
     1021 aagatctaat gctcaagcca ctgccaaaag cgggaaggcc attaggttgg ggtgagccag
     1081 aagacctgcc aggcgcagca agcaaccata agctttcgga ggaaaagctg ggaatgcaca
     1141 acagcagttg gcctgcaggc aacccgttag tggcatctcc atcgttcatt ttctgaaagc
     1201 ggatttcatc accaaaaaac tcattgaaaa aacatgagcc gtacgttttt tttggtggga
     1261 gccgctgtca tgctggcact caccgccttt tcgcaatcaa cagacagcac aaaaaccgct
     1321 gtgctggacg aagtaaccgt taccgccaat aagatccagc agaaacaaag ccagaccggc
     1381 aaggtggtta ccgtcatcaa caaagccgcc attgaaaaaa gccagggaaa aacactgggg
     1441 caactgctga acgagcaggc tggcctcacc atcaacggcg ccctcaacaa cctgggcacc
     1501 aaccaaggcg tgtacatgcg gggagccaac attggccgca ctttgatact ggtggacggc
     1561 gtgccagcct atgacccgtc attcataaat ggcgaaaccg atctcaactt cttctccatc
     1621 gccaatattg aacgcattga aatagcccgg ggcgcccaat cgacgctgta tggcagcgat
     1681 gccattgccg gtgtcatcaa tatcatcacc aacaaatcgg atgtgaccaa acctgtgcaa
     1741 ggcaacgtcg gcgccgctta tggctccttc aatactttca ggggcaatgc gcaggtatac
     1801 ggcaaaacaa aaacgctgga ctacagcctg cggtatgcca aactccgcag cgatggtttt
     1861 tcttccgccc acgacaaaag cggcaacaaa aattttgacg atgatggtta caatggcgat
     1921 gccgtgcagg caaccctgaa tgtgaaagcc tcgaatcgtt ttgagatcaa accctatttc
     1981 caatacagcc gttacaaaac cgaactggat aatggcgcct ttaccgacga caaggactat
     2041 accaatacca ataccaacaa actggcaggc accaggctgc aatacaaaac cgcatcggtg
     2101 caaatagtgg gtcattacat gtacggcgaa aatgaacgca actaccgcga tgacagtacc
     2161 gatgtgcccg gctttgtaaa atattctact aatgacttcg ccggcaaaag ccattttgca
     2221 gaactgtatg ccaatgtgca actggcgaaa ggctggaacc tgttggccgg cgccgatttc
     2281 aggcaggcca gcatgaacag ccgctatttc tccatcagca gttttggtcc ttacaccgat
     2341 gcgtttgctg acacctccct gcgccaggga tcggtatatg catcactcat gtaccagcat
     2401 aaaaactgga acctggaagg aggcatccgg tggaacaacc accagcgcta tggcaacaat
     2461 gccaccttta ctttcaatcc ttcttacagc atcaaccagc aatggcgggt gtttggcagc
     2521 attgccagcg gattcaagg
//
LOCUS       DATIQF010000561         1617 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_84947, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000561 DATIQF010000000
VERSION     DATIQF010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84947"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..664
                     /locus_tag="VLL95_09320"
     CDS             <1..664
                     /locus_tag="VLL95_09320"
                     /inference="COORDINATES: protein motif:HMM:NF036531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39102.1"
                     /translation="TRMPETSRIRPTADRTAPPTSKCEEGSAGSGGEKVKPEMGNISV
                     RIKTKDKEAASGISSWGAAYWQYFEELDKVTEANTSLAISKKMMLQTQTDAGIVLKPI
                     DNETALKTGDRITVCIEIRSDRQLEYVHLKDMRAACLEPLDQLSSYRWQGGLGYYQAP
                     KDASMHFFISYLPKGTYVFEYPLVVTHEGNFSNGISTIQCMYAPEFSAHSASQRMEVK
                     NQ"
     gene            772..>1617
                     /locus_tag="VLL95_09325"
     CDS             772..>1617
                     /locus_tag="VLL95_09325"
                     /inference="COORDINATES: protein motif:HMM:NF014114.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HSR39103.1"
                     /translation="MPSIQQPPALRKGDTIALVCPAGHMPREKTKICQQTLAAWGFKV
                     KLGKTVGHQFHYFSGTDEERLQDLQQMLDDPQVNAILCARGGYGCSRIIDKIDWRQFK
                     KHPKWIIGFSDVTVLHSTLYTKLKMASLHAPMANAFNDGGAKEMYVQSLKKALTGKKN
                     HYQVSAHSLNKKGTATGVLLGGNLSLLAHQLGTPSDINTKGALLFLEDVGEYLYNVDR
                     MLLQLDRAGKLKHLAGLVFGGFTDNKDTSSPFGKTIEEILSERIAGYSFPVCFGFPVS
                     HEKENV"
BASE COUNT          470 a          395 c          411 g          341 t
ORIGIN      
        1 cacgaggatg ccggagacca gcaggatcag gccgaccgcg gacaggacgg cgccaccgac
       61 gtcgaagtgc gaggaggggt ccgcgggcag cggcggtgaa aaagtgaagc ctgaaatggg
      121 caacatcagc gttcgcatta aaacaaagga taaggaagca gccagcggca tcagcagttg
      181 gggtgcggca tactggcagt atttcgaaga actggacaaa gtaactgagg ccaacacttc
      241 gctggcaata agcaaaaaaa tgatgctgca aacacaaacc gatgccggca tagtgctcaa
      301 acctatcgat aatgaaacgg ccttgaaaac cggcgacagg atcaccgtat gtatcgaaat
      361 acgcagcgat cgccagttgg aatatgtgca cctgaaagac atgcgtgctg cttgcctcga
      421 gccgctagat caactcagca gttaccgttg gcaaggtgga ttgggttatt accaggcgcc
      481 aaaagatgcc agcatgcatt tcttcatttc ctatttgccc aaaggcacat acgtgtttga
      541 atacccgctg gtggtaacac atgaaggcaa tttcagcaat ggcatcagca ccatacagtg
      601 catgtatgcg ccggaattca gtgcccacag cgccagccag cgaatggagg tgaaaaatca
      661 atgatagagt cagcatataa ttatggacgt cattgacttt cggctgaaac aataattttt
      721 gatacagcca atgcattgtt cctaaattac cgggccaatc ttatttgaat catgccatcc
      781 attcaacaac ctcctgcctt gcgcaaaggc gacaccatag cgctggtatg ccctgccggc
      841 cacatgcccc gtgaaaaaac aaaaatttgc cagcaaacgc ttgccgcttg gggctttaag
      901 gtaaaactgg gcaaaaccgt tggccaccag tttcactact tctcgggcac tgatgaagaa
      961 agattgcagg acctgcagca aatgctggat gatccacaag tgaatgccat tttgtgtgca
     1021 aggggcggct atgggtgcag ccgcatcatc gacaaaattg actggcggca attcaaaaag
     1081 catccgaagt ggatcatagg attcagcgat gttaccgtat tgcacagcac cttgtacacc
     1141 aaattgaaga tggcttcgct gcatgcccct atggccaatg ctttcaatga tggtggcgcc
     1201 aaagaaatgt acgtgcaatc gctgaagaaa gccctgactg gcaaaaagaa ccactaccag
     1261 gtgagtgcac actcgctgaa caaaaaaggc accgcaaccg gtgtgttgct gggaggtaat
     1321 ttgagtttgc tggcccacca gttgggcacc ccatccgata taaataccaa aggcgccctc
     1381 ttgttccttg aagatgtggg tgaatacttg tacaacgttg atcgcatgct gttgcaactg
     1441 gacagggcag gaaaactaaa acacctggcc ggcctggtat tcggcggttt caccgacaac
     1501 aaagacacca gttccccttt cggaaaaacg attgaagaaa ttctttccga aagaatcgca
     1561 ggttactcct tcccagtttg ttttggattc ccagtaagcc atgaaaagga gaacgtg
//
LOCUS       DATIQF010000562         3295 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_206867,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000562 DATIQF010000000
VERSION     DATIQF010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3295)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3295
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206867"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..222
                     /locus_tag="VLL95_09330"
     CDS             <1..222
                     /locus_tag="VLL95_09330"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HSR39104.1"
                     /translation="FAQHKQHISAFEGCLELNAYQDNKSPEIFFTISRWTSEAHLDNY
                     RYSDFFKSLWTVVKPMFAAKAEAHSMTIV"
     gene            229..999
                     /locus_tag="VLL95_09335"
     CDS             229..999
                     /locus_tag="VLL95_09335"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSR39105.1"
                     /translation="MIRVIARVFQILYCLYAFVLFVTLLFLISPGILIALMMQQPASG
                     NLTIRLSKFWSDVWLLMIVIRHINIEKQPIETNQHYVFVANHISYLDIPLIFQAIRHN
                     MIRVLGKAEMSRIPVFGTLYKLAVILVDRSSAEKRAKSVLVLKKMLAKNVSIFIFPEG
                     TFNETGFPLKSFYDGAFRVAIETQTAIKPIVFLDANHLMHYSSVWKFRPGLSRAVILP
                     AVPVNGFTLADVDILKKQVYELMESTIIEYSKSNASPN"
     gene            983..>3295
                     /gene="priA"
                     /locus_tag="VLL95_09340"
     CDS             983..>3295
                     /gene="priA"
                     /locus_tag="VLL95_09340"
                     /inference="COORDINATES: protein motif:HMM:TIGR00595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005658 - alpha DNA polymerase:primase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HSR39106.1"
                     /translation="MPHPTDTGQELFPTEKPSLFADVIVPLYLPKTLTWSIPVAMEQQ
                     VKQGCRVEVQVGKSKRYAGIVKRVHHEIPGKYEVKPILSVLDETPVVTTQQLQLWEWI
                     ASYYCCSEGEVMIAALPSHLKLSSESVIQYNEFHAVALHELSDKEYLVAEALEIKQQL
                     SLAEIQTLLDSHYVYPVVKKLVEKGIATVWESLQEKYKEKTETYVTLSPLYRNEAALE
                     ELVNSWSKAPKQLDLLLAFLHFDRTEGQVVKSALLKKAGASAAVLDGLVSKGVLQLEK
                     RSVDRLPQMAKELDVSIEFSEPQQKALESLRQQTQTHAVTLLHGVTGSGKTQLYIQLI
                     ADTIRKGQQCLYLLPEIALTSQIVRKLRLHLGGYVGIYHSKFNPNERLELWNKVLSGE
                     IQVVLGARSALFLPFNNLQLVIIDEEHDSSFKQYDPAPRYHARDAAIFYASLWNAKVL
                     LGSATPSIETYHNCETGKYGLVTLNERYGDLELPAMELIDLKQVPDSRKGKVILSPPM
                     KEAIDQTLQAGKQVIVFQNRRGYSPYQICNVCGWIPRCEHCDVSLTFHKSTQKLHCHY
                     CGASYPPAKTCEACGSHQFRQKSFGTEQLEESLEQAFPNHAVARMDTDSVRGKNSHEN
                     LIRQFEEQRVHILAGTQMVVKGLDFDHVGLVCIPDADGIMRFADFRASERAFQLIEQV
                     SGRAGRKGEKGKVLVQLFDTVNPVITFARNHDYRGFYQQESEQRKLFHYPPFTRLIML
                     ECRHKDHITSWKAAESLAAMLRMKYAQHVTG"
BASE COUNT          882 a          820 c          808 g          785 t
ORIGIN      
        1 tttgctcaac acaagcaaca catttccgcc tttgaaggat gccttgaact gaatgcttac
       61 caagacaata aatcaccgga aatatttttt accatcagcc gctggaccag cgaagcgcat
      121 cttgataatt accgctacag cgattttttt aaatcgctct ggacggtggt gaaacccatg
      181 tttgccgcca aagcagaagc gcattccatg accattgtgt aaccagttat gataagagta
      241 atagcccggg tattccagat cctttattgc ctctatgctt ttgtgttatt tgtgacactc
      301 ctgttcctca tcagtccggg tattctcatt gcgctgatga tgcagcaacc agccagcggc
      361 aacctcacca ttcgcctttc aaagttctgg agtgatgtct ggttattgat gattgttatc
      421 cggcatatca atattgaaaa gcaacccatc gaaacgaacc agcattatgt tttcgtagcc
      481 aaccacattt cctacctcga tattccattg atcttccagg ccatcaggca caacatgatc
      541 cgggtactgg gcaaggcaga aatgagccgc atcccggtgt ttggcacttt gtacaaactg
      601 gctgtgatac tggtagacag gagcagcgcg gaaaaacgag ccaaaagcgt actcgttttg
      661 aagaaaatgc tggcaaagaa tgtctccatt ttcatcttcc ctgaaggcac cttcaatgaa
      721 actggcttcc cgttgaaatc cttttacgac ggggctttcc gggtggccat cgaaacgcaa
      781 acggccatca agcccattgt attcctggat gccaatcacc tgatgcatta ttcatctgtt
      841 tggaaatttc gccctggcct gagccgcgct gttattttgc ctgccgtacc agtcaacggg
      901 tttacgctgg ccgatgttga catcctgaaa aaacaggtgt acgaattgat ggaatccact
      961 attattgagt acagcaaatc gaatgcctca cccaactgac accggccagg aattgttccc
     1021 aacagagaag ccttctttgt tcgcggatgt cattgtgccc ttgtacctgc ccaaaacact
     1081 tacctggtcc ataccggttg ccatggagca acaggtgaaa caaggatgcc gggtggaagt
     1141 gcaggtgggc aaatcgaaaa gatatgcggg gattgtaaaa agagttcatc atgaaatacc
     1201 gggcaagtac gaggtgaaac caattttgtc cgtattggat gaaacgccgg tggtgacgac
     1261 gcaacagttg cagttgtggg agtggattgc cagttattac tgctgctcag aaggcgaagt
     1321 gatgattgcc gctttgccat cgcacttaaa gctgagcagc gaaagcgtga ttcagtacaa
     1381 cgagtttcac gctgttgccc ttcacgaact ttccgacaaa gaatacctgg tagcggaagc
     1441 gctggaaata aaacaacaac tttcgctggc agaaatccaa accctgctcg acagccatta
     1501 tgtgtacccg gttgtaaaaa aactggtgga aaaaggcatc gcgacagtat gggaatcgtt
     1561 gcaggaaaaa tacaaggaga aaacagaaac ctacgtcacc ctttctcctc tctatcgcaa
     1621 cgaagcagcg ttggaagaac tggtgaatag ttggagcaag gctcccaagc aactggatct
     1681 gttgctggct ttcttgcact tcgacagaac ggaaggccag gtggtgaaaa gcgccttgct
     1741 caaaaaagcc ggcgcctctg cagccgtgct ggatggtttg gtgagcaagg gtgtactgca
     1801 attggaaaag cgcagtgttg acaggttgcc gcaaatggcc aaagaactcg atgtttcgat
     1861 tgaattttcg gagccacagc aaaaagcact ggaatcgttg cggcagcaaa cacaaacgca
     1921 tgccgtcacc ctgctgcatg gagtaaccgg tagtggcaag acccaactct atatccagct
     1981 gattgcggat accattcgta aaggacaaca atgcctgtac ctgcttcccg aaatcgcact
     2041 tacctcgcag attgtgcgga aactgcgcct gcacctgggc ggctacgtgg gcatctatca
     2101 ttccaaattc aaccccaacg aaaggctgga gttgtggaac aaagtattga gtggtgaaat
     2161 ccaggtggtg cttggcgccc ggtcggcttt gtttttgccg ttcaataatc tccagctcgt
     2221 catcatcgac gaagaacatg acagctcatt caagcaatac gatccggcac cacgctatca
     2281 tgcccgggac gctgccatat tttacgcttc gctttggaac gccaaagtgt tgttgggcag
     2341 tgcaacgcct tccattgaaa cctaccacaa ttgcgaaaca ggcaaatatg gcctggtaac
     2401 gctcaacgaa cggtacggcg acctggaatt gcctgccatg gaattgattg acctgaagca
     2461 ggtgcctgat tcaagaaaag gcaaggtgat cctttcgcct cctatgaaag aagccattga
     2521 tcaaaccctg caggcgggca aacaggtcat cgtctttcag aatcgaaggg gttattcgcc
     2581 gtatcaaatc tgtaatgtgt gcgggtggat ccctcgttgc gaacattgcg atgtatcgct
     2641 cacctttcac aagagcacac aaaaactgca ctgccattat tgtggagcct cctacccgcc
     2701 cgccaaaacc tgcgaagcct gtggcagtca ccagttccgg caaaagagtt ttggtacgga
     2761 gcaattggaa gaatcgctgg agcaggcatt ccccaaccat gccgtagcac gcatggatac
     2821 cgacagtgtg cgtggcaaga acagtcatga aaacctgatc aggcaatttg aagaacaacg
     2881 ggttcatatt ttggccggca cgcaaatggt agtgaaaggg ctcgactttg atcatgtggg
     2941 cctggtatgc attcctgatg ctgatggcat catgcgcttt gccgatttta gggcctctga
     3001 acgagccttc cagctgatag aacaggtaag tggccgggct ggccgcaaag gcgaaaaagg
     3061 caaggtgctg gtacaattgt ttgataccgt caaccctgtc atcactttcg ccaggaatca
     3121 cgactaccgc ggcttttacc agcaggaaag tgaacaacgg aaactttttc attatccccc
     3181 tttcacccgg ctgatcatgc tcgaatgccg ccacaaggat catattactt cgtggaaagc
     3241 tgccgaatcg ctggctgcca tgttgcgaat gaaatacgcc caacacgtta ccggt
//
LOCUS       DATIQF010000563         2069 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_176194,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000563 DATIQF010000000
VERSION     DATIQF010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2069
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176194"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1272
                     /locus_tag="VLL95_09345"
     CDS             <1..1272
                     /locus_tag="VLL95_09345"
                     /inference="COORDINATES: protein motif:HMM:NF025017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSR39107.1"
                     /translation="PHTTYLLDDTGDPAFREVAEQYGAVWLELKGLPGAKAGKINAAL
                     QQTDEEFILVLDPDHIPFPNFLDEVLGFFEDASVGFVQVSQAYYNQYRSFTAKGAAEQ
                     TYSFYGPVQMGMHGHNCAVAIGANCTFRRKALESIGGHGIGLAEDLVTSIRIHSKGWK
                     SVYQPVVVSRGLVPEELGSFCKQQLKWSRGVHEVLFAELPKCWKGLSGWQRLSYFSIG
                     TYYFGGFIVFLFLLIPYLFLWFGWLPADMDFVSFLLKWTPVAVCGITIYLYVQQWMCD
                     PLTERGLHWRGMVLKFACWPVFLLGFLLSLINKDIPYIPTAKKAVKGFTPFARPIIAH
                     ILIFIFSIVLVVLQRRYLTPEAKLALTSGEIWGMIAFASIAFIMACGALYAAIDSRNI
                     SAEEPWQQVAVNDIARDSAPHSFMPTTPPHE"
     gene            1265..>2069
                     /locus_tag="VLL95_09350"
     CDS             1265..>2069
                     /locus_tag="VLL95_09350"
                     /inference="COORDINATES: protein motif:HMM:NF014237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HSR39108.1"
                     /translation="MNKTFSRMSAALLLLGVIASLFYFITMAGKKESGPLEDMLGVIG
                     SKVASWEKNVVRDNEGSRSASLQWFHVIRNSTIRLNHLDTILTGAYDDNTAESYESIV
                     SLEDSLQFNLPVVSIYTAWGSKKIQVFPLLRAQAIYDLGSIPLITWEPWLNDFDEESY
                     PFLKGVVNKNLNGMNAIAAGKYDGYIDKWAADAKKFGVPFFLRFGHEMNDPYRYPWGV
                     QNNTPWEFIAAWRHIHERFKLAGATNVLWLWSPHPAYQPYADFYPGHEYV"
BASE COUNT          489 a          536 c          516 g          528 t
ORIGIN      
        1 ccccacacca cttatttgct cgatgatacc ggcgatcctg cctttcgcga agtggcagag
       61 caatatggtg ccgtgtggct ggagttaaaa ggattgccgg gcgccaaagc gggcaaaata
      121 aatgccgcgt tgcagcaaac cgatgaggaa ttcatcctgg tacttgaccc cgaccatatt
      181 ccttttccca acttcctgga tgaagtgctt ggtttttttg aagatgccag cgtgggattt
      241 gtgcaggtat cgcaggcata ctacaaccag taccggtcat tcactgcaaa aggagcagcc
      301 gaacagacct acagttttta cgggccggtg caaatgggca tgcatggcca caactgtgca
      361 gtagccatag gtgccaactg cacctttcgc cgcaaagcac tggaaagcat cggtggacat
      421 ggcataggcc tggcagaaga cctggttact tccatccgca tccacagcaa aggctggaaa
      481 agcgtttacc aaccggtggt ggtgagccgc ggattggtgc cggaagaatt gggctccttc
      541 tgcaagcaac aactcaaatg gtcgagggga gtgcacgaag tgctgtttgc agaactaccc
      601 aaatgctgga aaggcctttc tggatggcag cggctgtcct acttcagcat tggcacctac
      661 tattttggcg gctttattgt tttccttttc ctgctcatcc cttatctctt tttgtggttt
      721 ggctggctgc ccgccgatat ggactttgtg agtttcctgc tcaagtggac gcctgtcgcc
      781 gtctgtggca tcacaattta cctctatgtg cagcaatgga tgtgtgaccc gctaacggaa
      841 aggggcttgc actggcgggg catggtattg aaatttgcct gctggccggt attcctgctt
      901 ggtttcctgc tatcactcat caacaaagac attccctaca tccccactgc caaaaaagcg
      961 gtgaaaggat tcacaccctt tgccaggccc attattgcac acatactcat tttcattttc
     1021 agcattgtat tagtggtgct gcaacgccga tacctcaccc ccgaagccaa actggcactg
     1081 accagcggcg agatctgggg aatgatcgcc tttgcctcca ttgcgtttat catggcttgt
     1141 ggcgcactct acgccgccat tgattcccga aacatttcag cggaagaacc ctggcagcaa
     1201 gtagccgtaa acgatattgc gagggattcc gctcctcatt cattcatgcc aacaactcct
     1261 ccccatgaat aaaacattca gccgcatgtc agccgctttg ttgctgctcg gtgttatcgc
     1321 atcgttgttt tacttcatca ccatggcggg caaaaaagaa tcgggtccgc tggaagacat
     1381 gctcggtgtg attggctcta aagtagccag ttgggaaaag aatgttgtac gggataatga
     1441 agggagccgc tctgcctcat tgcaatggtt tcatgtcatc agaaacagta cgattaggct
     1501 gaatcacctt gataccattt tgaccggcgc ctacgatgac aataccgcag aatcatatga
     1561 aagcattgtg agtcttgaag attccctgca attcaatttg cctgtggttt ccatttacac
     1621 agcttggggc agcaagaaga tccaggtgtt cccattgttg cgggcacaag ccatttatga
     1681 cctcggctct atcccgctta tcacctggga gccctggctc aacgattttg acgaagagag
     1741 ctatccattt ttgaaaggag tagtcaacaa gaacctgaat ggcatgaatg ctattgccgc
     1801 cggaaagtat gatggctaca tcgacaaatg ggcggctgat gccaaaaaat tcggcgtgcc
     1861 ttttttcctg cgcttcggtc acgaaatgaa tgatccatat cgttatccct ggggcgttca
     1921 aaacaacacg ccgtgggagt ttatagcggc ctggcgccac attcacgaac gattcaaact
     1981 ggccggcgct accaatgtgt tgtggttatg gtcgccacac cccgcctacc agccctatgc
     2041 tgatttctat cccggtcatg aatacgtgg
//
LOCUS       DATIQF010000564         2267 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_282553,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000564 DATIQF010000000
VERSION     DATIQF010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282553"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..349
                     /locus_tag="VLL95_09355"
     CDS             <1..349
                     /locus_tag="VLL95_09355"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HSR39109.1"
                     /translation="STAIAGGSIVIHQPAGKKGSTKVDPPITQSTSVLDIRVQNNPST
                     GASAFRLQLRSNDRSTPIALKVTDMTGKPLEAKQGLANGSTVELGRNYIQGMYMVEVV
                     QGDQRKVIKLMKQ"
     gene            complement(407..1462)
                     /locus_tag="VLL95_09360"
     CDS             complement(407..1462)
                     /locus_tag="VLL95_09360"
                     /inference="COORDINATES: protein motif:HMM:NF015272.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004833 - tryptophan 2,3-dioxygenase
                     activity [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 2,3-dioxygenase family protein"
                     /protein_id="HSR39110.1"
                     /translation="MTSPQPQYYADYLELSAILNAQHPVSFQPGFEPAHDEMLFIIIH
                     QAYELWFKQIMFEVESVTGIMQQPAINDNSPELQTVVHRLNRVNTIMKVLVQQMDIME
                     TMTPMDFLDFRDLLRPASGFQSWQFKVLEARLGLRFEDRHGQHYYTSALRPEYVTMVK
                     AAEEAPSLLQLLNQWLERMPFFDHADLWTEFESTIEGQNQWGGPFWSSYRQALSHSLS
                     DIEKANLHQFDKVMGFAEPAPERQLSPLASRAALFIMLYRGYPLLQLPFQIINACLEL
                     DEQLSTWRYRHMNMVHRMIGQRIGTGGSTGKDYLKGAADKHYVFKEFAQLTSFLIERR
                     KLPFLPKAVEHKLGFAS"
     gene            1607..>2267
                     /locus_tag="VLL95_09365"
     CDS             1607..>2267
                     /locus_tag="VLL95_09365"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HSR39111.1"
                     /translation="MKKTIVWLAALVVVAAISCKSTATEETVVKYVTDTARVDGHPAW
                     IMQGNLYEVNVRQYTPEGTFKAFATHLGRLKDMGVQTLWFMPIQPISKVDRKGDLGSY
                     YAVSNYTAVNPEYGTLDDWKELVKMAHEQGFKVIIDWVPNHTGGDHDWLVQHPDFFVR
                     DSVTGKPVSQFDWTDTRKLDYHNPALVDSMINAMKYWITETDIDGFRCDQAHLVGKGL
                     LW"
BASE COUNT          570 a          536 c          605 g          556 t
ORIGIN      
        1 aagcacagca atagcaggtg gctctattgt gatacatcag cctgctggca agaagggtag
       61 cacaaaagtt gatccgccga taacccaatc aacttctgta ttggacatcc gcgttcaaaa
      121 taaccccagc accggagcct ctgccttccg cctgcaattg cgcagcaacg accgcagcac
      181 accgattgcc ttgaaggtga ccgacatgac tggcaagccg ctggaggcca aacaaggact
      241 ggccaatggc agtacagtgg aactgggccg caattacatc cagggtatgt acatggtgga
      301 agtagtgcag ggcgaccagc gcaaagtgat caaactgatg aagcaataaa gcaattacac
      361 ccttaagcgt aattgtgata acggcctccg aaagggggcc gtttttttag gaggcaaatc
      421 ccagtttgtg ttccacagct tttggcagga agggtagttt tcttcgttca ataaggaagc
      481 tggtgagttg tgcaaactct ttgaacacat agtgcttatc agcagcgcct ttcaggtagt
      541 ctttgccggt gctgccgccg gtaccaatgc gttggccgat catgcggtgc accatgttca
      601 tatgccggta gcgccaggta ctcagttgct catccagttc caggcaggca ttgatgatct
      661 ggaagggcaa ttgcaacaac gggtagcctc ggtacagcat gatgaagagg gcggccctgc
      721 tggccagtgg cgacaattgt ctttccgggg cgggttctgc aaaccccatc accttatcaa
      781 attggtgcag gttggctttt tcaatatcgc tcaggctgtg gctcaacgcc tgccggtagc
      841 tgctccaaaa ggggcctccc cattggtttt gcccttcaat agtggattca aattcggtcc
      901 aaagatctgc atgatcaaaa aagggcatgc gctccagcca ttggttcagc agttgcaaaa
      961 gcgatggggc ttcttctgcc gctttcacca tggtcacgta ttcaggacgc agggcactcg
     1021 tgtaataatg ctgcccgtga cggtcttcaa accgcagccc cagcctggct tcgagtactt
     1081 tgaactgcca gctctgaaag ccggatgccg ggcgcaacag gtcgcggaag tccagaaaat
     1141 ccatgggggt catggtctcc atgatgtcca tttgctgcac cagtactttc ataatagtgt
     1201 tgacccggtt cagccggtgc actacggttt gaagctcagg ggaattatcg ttgatggctg
     1261 gctgttgcat aatgcctgtc accgactcca cttcaaacat gatctgcttg aaccacagtt
     1321 cataggcctg gtgaatgatg atgaaaagca tttcatcgtg ggccggttca aagcccggct
     1381 gaaaactcac cgggtgttgg gcgttcagga tagcggatag ttccaggtaa tcggcataat
     1441 actggggctg gggagatgtc atggcaagcg ttttggatca attgaattcg gaaggattca
     1501 gctgcaaata aacagtttcg gaccgtaagc gctcctttcc cttttatcaa ataaaaattg
     1561 ggaactcctc aataatgtgt aaatttgaca cattcaaaat tatcacatga aaaagacgat
     1621 tgtttggctg gccgccctgg tagtggttgc tgccatttcc tgtaaatcaa ccgcgacgga
     1681 agaaactgtc gtgaagtatg ttacggacac cgcccgggtg gatggccatc ctgcctggat
     1741 catgcaaggc aatctttacg aagtgaacgt gcgccaatat accccggaag gtaccttcaa
     1801 ggcttttgct actcatttgg gcagactcaa ggacatgggg gtacaaacat tgtggttcat
     1861 gcccattcag cccatcagca aggtggacag gaaaggcgac ctgggaagtt attacgctgt
     1921 ttcaaattat acggctgtaa atcctgagta cggtacactt gatgattgga aagaactggt
     1981 gaagatggcc catgaacaag ggttcaaggt gattattgat tgggtgccca accataccgg
     2041 cggcgaccat gattggctgg tgcagcatcc tgattttttt gtgagagact ctgttacggg
     2101 caaacccgtt tcacaatttg actggacaga tacacgcaaa ctcgattacc acaatccggc
     2161 actggtagac agtatgatta atgcgatgaa gtactggatc acagaaactg atattgacgg
     2221 ttttcgttgc gatcaggccc atttggtggg taagggtttg ctttggg
//
LOCUS       DATIQF010000565         9253 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_9104, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000565 DATIQF010000000
VERSION     DATIQF010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 9253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9253
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9104"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..209
                     /locus_tag="VLL95_09370"
     CDS             <1..209
                     /locus_tag="VLL95_09370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39112.1"
                     /translation="VTMAMAMALVSRGFKYGHNLFHLSFPNAVHDEASWGMRLHLPMQ
                     FINGAVARAARMTSGRVLAENPLN"
     gene            362..700
                     /gene="gatC"
                     /locus_tag="VLL95_09375"
     CDS             362..700
                     /gene="gatC"
                     /locus_tag="VLL95_09375"
                     /inference="COORDINATES: protein motif:HMM:TIGR00135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HSR39113.1"
                     /translation="MVSCTFETHKPYLMEVNEKLIDHLAQLARLEFWPEQKVAMVSDM
                     KKIIGFVEKLNELDTTGVEPVRYMGTEPNVYRPDSPAGMVNQAQALAPAQNHDEAFFK
                     VPKVIRKENQ"
     gene            707..1417
                     /locus_tag="VLL95_09380"
     CDS             707..1417
                     /locus_tag="VLL95_09380"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR39114.1"
                     /translation="MKGIIHLEEIRKTYFMGSHSVEVLKGIDLDIFQNEYVALMGPSG
                     SGKSTLMNILGCLDSPTSGKYILNGQDVSEMGDAELAQIRNKEIGFVFQQFNLLPRLS
                     AAENVALPLVYAGIAKKQRQEMALEVLKKVGLADRSHHKPNEMSGGQIQRVAIARALV
                     NNPSIILADEPTGNLDTRTSKEIMELFSSIQEAGNTVVLVTHEEDIAGYAKRVIRLRD
                     GLVESDLPRSQVVFAHAH"
     gene            1479..2039
                     /locus_tag="VLL95_09385"
     CDS             1479..2039
                     /locus_tag="VLL95_09385"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HSR39115.1"
                     /translation="MALKIYTKTGDNGTTSLIGGTKVSKDHIRIESYGSVDELNSYIG
                     LITDLSGNFYSTDFLRQIQDRLFTIGSSLACDPEKEPGFAIPDLKQSDIEQLEREIDR
                     MNLELPEMKHFILPGGHPTVSHIHIARCVCRRAERQCVHLNGSGGKVEQLVIVYLNRL
                     SDYLFVLARFVSKQLEVTEIAWRPRV"
     gene            complement(2054..2719)
                     /locus_tag="VLL95_09390"
     CDS             complement(2054..2719)
                     /locus_tag="VLL95_09390"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR39116.1"
                     /translation="MNSNPILIASNIRKQYGLLHILKGVSFSLNRGEIVAIVGASGAG
                     KSTLLHILGTLDGADSGAIEIAGTSVDKLKGKTLSNFRNRHLGFIFQFHHLLPEFNAL
                     ENVCIPGWIAGKPKKEVELDAANLLRIMGLEDRVDHKPSQLSGGEQQRVAVARALINR
                     PDIVFADEPTGNLDSQHAKELHDLFFQLRQSLNQTFLIVTHNDELAALSDRKLVMKDG
                     LLV"
     gene            2863..3084
                     /locus_tag="VLL95_09395"
     CDS             2863..3084
                     /locus_tag="VLL95_09395"
                     /inference="COORDINATES: protein motif:HMM:NF022829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2795 domain-containing protein"
                     /protein_id="HSR39117.1"
                     /translation="MFWTLELASHLEDAPWPATKDELIDYAIRSGAPIEVVENLQELE
                     DDGEIYEGLEDIWPDYPSQDDFFFNEDEY"
     gene            complement(3145..3405)
                     /locus_tag="VLL95_09400"
     CDS             complement(3145..3405)
                     /locus_tag="VLL95_09400"
                     /inference="COORDINATES: protein motif:HMM:NF015069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SemiSWEET family transporter"
                     /protein_id="HSR39118.1"
                     /translation="MNWVDIVGHIGSFLSSVTFIPQVYKTWKSRSAGDLSMVMMLIVF
                     TSTIVWLVYGISLMLWPVIVANGIICFLSLLLIVFKLTFKNK"
     gene            complement(3525..4340)
                     /locus_tag="VLL95_09405"
     CDS             complement(3525..4340)
                     /locus_tag="VLL95_09405"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSR39119.1"
                     /translation="MSHQLLKGKKGIIFGALNDQSIAWKTAEKCFAEGAQIVLTNAPI
                     ALRMGEINNLAAACGNAPVIPADVSNNDDIKNLFTQAMAHFGGPVDFVLHSVGMSLNI
                     RKGNPYTALNHEFEHKTLDISALSLHRVCQVAYEMDAMAEWGSIVALTYIAAQRVFPD
                     YSEMADAKALLESITRSFGYHYGVKKKVRINTISQSPTRTTAGSGVKGFDGFISFAEK
                     MSPLGNANAEDCANYCVMMFSDLTRMVTMQNLFHDGGFRFTGVTQEVIEQMEK"
     gene            5271..6797
                     /locus_tag="VLL95_09410"
     rRNA            5271..6797
                     /locus_tag="VLL95_09410"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            6932..7005
                     /locus_tag="VLL95_09415"
     tRNA            6932..7005
                     /locus_tag="VLL95_09415"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6966..6968,aa:Ile,seq:gat)
     gene            7085..7158
                     /locus_tag="VLL95_09420"
     tRNA            7085..7158
                     /locus_tag="VLL95_09420"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7119..7121,aa:Ala,seq:tgc)
     gene            7357..>9253
                     /locus_tag="VLL95_09425"
     rRNA            7357..>9253
                     /locus_tag="VLL95_09425"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT         2532 a         1954 c         2433 g         2334 t
ORIGIN      
        1 aagtgaccat ggcgatggcc atggctttgg tgtcaagagg cttcaaatac gggcacaacc
       61 tgtttcacct cagctttcct aacgctgtgc atgatgaagc ctcctggggt atgcggctgc
      121 atcttcccat gcaattcatc aatggggctg tagcccgcgc cgcccgtatg acctcgggac
      181 gtgtattggc tgagaatccc ttgaattaat gattcggcac atcatatgtc tttttttgac
      241 tgatgcggcc ttccaaaagg aaggccgcct tggttggttc ggggccgatt ccgcttagcg
      301 ttattcccac gctttggtaa ctgcattttg ccactgaaaa aaacttgttc aaacccagcc
      361 tatggtttcc tgtacttttg aaacccataa gccataccta atggaagtga atgaaaagct
      421 gatagatcac ctcgcccaac tggccagact ggaattttgg cctgagcaaa aggttgccat
      481 ggtaagcgat atgaaaaaga tcatcggctt tgtggaaaag ctcaacgaat tggacacaac
      541 cggggtggaa cctgtgcgtt acatgggtac tgagcccaat gtgtacaggc ccgatagtcc
      601 tgccggaatg gtaaaccaag cgcaggccct ggcgcccgcc caaaaccatg atgaagcttt
      661 tttcaaagtc ccaaaagtga taaggaagga aaatcaataa cactgcatga aaggaatcat
      721 ccatctcgag gaaatccgca agacctattt catgggatcg cattcggtgg aagtattaaa
      781 gggtatcgac cttgatattt tccagaatga atatgtagca ctgatgggcc cctccggctc
      841 cggaaagagc accctgatga atattctagg ctgccttgac agtcccacct ccggtaaata
      901 catcctgaat gggcaggacg tgagtgaaat gggtgatgcc gaattggccc agatcagaaa
      961 caaggaaatt gggtttgtat tccagcagtt caatctattg cccaggcttt cggctgccga
     1021 aaatgtggcg ctgccgttgg tttatgcggg tattgccaaa aagcaaaggc aggaaatggc
     1081 gttggaggta ctgaaaaagg taggcttggc cgatcgcagt caccacaagc ccaacgaaat
     1141 gagtggtggt caaatacaaa gggtggccat tgcccgggcc ctggtaaaca atccgtccat
     1201 tatcctggct gatgaaccaa caggaaacct tgataccagg acttcaaagg agatcatgga
     1261 gcttttttcc tctatccagg aagctggtaa cacggtggtt ctggtaacgc atgaagagga
     1321 tattgcaggc tatgccaagc gggtgatcag gcttcgcgac ggtttggtag aaagtgatct
     1381 gccccggtca caggtggtat ttgcacatgc ccattgatct tacactttca ggtttttgaa
     1441 ctttacggtt gccatgttgt tactttcgcg attgaaatat ggcactgaag atttatacaa
     1501 aaaccggcga taatggcacc acctctctta ttggtggaac caaggtgagc aaagatcaca
     1561 ttagaattga gagctatggt tcggtagacg aactgaattc ttacattggc ttgatcacag
     1621 acctttccgg taatttttac tcaacagatt ttctccgaca aatacaggac cgtttgttta
     1681 caattggttc ttcattggca tgcgatcctg aaaaagaacc aggttttgcg atcccggatt
     1741 tgaagcaaag cgacattgaa cagcttgaaa gggaaattga cagaatgaac cttgagcttc
     1801 ctgaaatgaa acatttcatt ttgcccggag gtcatccaac tgtttcgcac atccatatag
     1861 cccgttgcgt gtgccgtaga gccgaaaggc aatgtgttca tttgaatgga tcaggcggaa
     1921 aagttgagca gctcgtaatt gtgtatctca accgattgag cgattacctc ttcgtgctgg
     1981 cacgctttgt ttcaaaacaa cttgaggtga ctgaaattgc ctggaggcca cgggtttaaa
     2041 ttctgccgcg acatcaaacc agcaggccgt ctttcattac cagttttctg tcgcttaagg
     2101 cagccagttc atcattgtgg gtaacgatca ggaaggtttg attgaggctt tgccgcaatt
     2161 ggaaaaacag atcatgtagt tcttttgcgt gctgactgtc gagattgccg gtgggttcgt
     2221 cggcaaatac aatatcgggc cggttgatga gcgcccgggc cactgcaacc cgttgttgtt
     2281 cgcctcctga aagttgggat ggcttgtggt ccactcgatc ttcaagcccc attatacgca
     2341 gcaggttggc agcatccagt tccacctctt ttttcggttt accggctatc catccgggaa
     2401 tacacacgtt ttcgagtgca ttgaattccg gtagtaagtg gtgaaactga aatatgaatc
     2461 ccaggtgcct gtttcggaag ttggaaagcg tttttccttt cagtttgtca acagaagtgc
     2521 ctgcaatttc tattgccccg ctatccgcgc cgtccaatgt gcccaaaatg tgcaacaagg
     2581 tgctctttcc tgcccctgaa gcgccaacta ttgcaactat ttctcctctg ttcagcgaga
     2641 aggatacacc tttcaaaata tgcagcaatc cgtattgctt ccggatgttg ctggcaatga
     2701 gaatgggatt cgaattcata cactggcgta aaagtagggc caaccggcct tccccgtaaa
     2761 gaaaaggtgt caaggatcaa aatcgagccg ggtaaataac aacatttggt aatttcattg
     2821 atacctctac atttgccaaa aatttttcag gaggttttct ttatgttttg gactttggaa
     2881 ttggcttctc atcttgagga tgcgccgtgg ccggccacaa aagacgaact tatagactac
     2941 gctattcgtt ctggtgcacc cattgaagtg gtggaaaacc tgcaggaact ggaagatgac
     3001 ggcgaaatct atgaagggct ggaagatatt tggcccgatt accccagcca ggatgatttc
     3061 tttttcaacg aagacgaata ttaatcgatt ttacttccaa actatctgtt gaagccgctc
     3121 taatagggcg gctttctttt tgaattattt gttcttgaag gtcagcttga aaactatgag
     3181 tagcaggctc agaaaacaga taataccatt ggctacaatt accggccaca gcatgagtga
     3241 aataccgtaa accagccaca cgattgtgct ggtaaatacg ataagcatca tcaccatgct
     3301 gagatcgccg gcgctgcggc ttttccaggt tttgtaaacc tgcggaataa aggtgactga
     3361 agaaagaaaa gagcctatgt gccctacaat gtctacccaa ttcatgattg gtggtttgat
     3421 ttttggattt aaacaaaaga gaattccaaa ttcctcctcg caggcctggt attgaaagta
     3481 gcgattcggg gaatttggaa ttcttcttcc gcaaaaaggc tgctttattt ctccatttgc
     3541 tctattactt cctgggttac ccccgtgaat ctgaaacctc catcgtggaa gaggttttgc
     3601 atggtaacca tcctggtaag atcgctgaac atcatcacac aataattagc gcaatcttca
     3661 gcgttagcat tgcccaatgg gctcattttt tctgcaaaac tgataaatcc atcaaaccct
     3721 tttacaccgc tgcccgcagt ggtgcgagta gggctttggc tgatggtgtt gatgcgtact
     3781 ttctttttta caccgtaatg atagccaaag ctgcgggtga tgctttccaa taaagctttc
     3841 gcatcggcca tttcgctgta gtccggaaag actctttgcg cggcgatgta ggtgagagcc
     3901 acaatgctac cccattcagc cattgcgtcc atctcgtaag ctacctggca aaccctgtgc
     3961 aggctcaatg ctgaaatatc gagggtcttg tgctcaaact cgtggttcag ggccgtatac
     4021 ggatttcctt ttcttatgtt gaggctcatg cctacgctgt gcaatacgaa atcaacaggt
     4081 ccgccaaaat gcgccattgc ctgtgtgaag aggttcttga tgtcgtcatt gtttgaaaca
     4141 tcggcgggta taaccggtgc attgccacag gccgcagcca aattgtttat ttctcccatc
     4201 ctaagggcaa tgggggcgtt ggtgagtaca atttgtgcgc cttcggcaaa gcatttttct
     4261 gctgttttcc aggcaattga ttggtcgttc agtgcgccaa aaatgatgcc tttttttcct
     4321 ttgagtaatt ggtgagacat acgctttgtt tgtttttgaa ctgagtaatg ctcagcattg
     4381 aattgtcggt aaaagtaata ctatctctgt catgcattgt aatcagttgc tgcctgggag
     4441 atgcatgtgt tttgtcattc aagtagattg caccaggtgc tacttgtgca tatctgttca
     4501 ttcaaactgc gggcgggaga aagaaatgct gcacctttcg tttttgggaa tgaagttgaa
     4561 aagattcgag aggaaacaat taccaagttg tttgattggt gcaagactga attcaagtcg
     4621 atgatctgtt atgtattgaa ttgtgagttt ttgcgcatta taattatgcc tgcctgctca
     4681 tcatgcacac catggcaaaa aaaatgaatc gctgaaatcc ttgcagcacc tgcgtttcag
     4741 atgcgttaac aaagttttac ttcaaatata gttggctggt attctatcgc ctctatcttt
     4801 gccgtccgct tttgaaaaac ggtattggag aggtaggtat aagcgggtaa gatctttgga
     4861 ggagcgggga gtttttgagg ggttgagagg ggagagatga ggttgtagat ttcctgaaaa
     4921 aacttttgaa aaaaagtgtc tgaaaagttg gtagaatgaa attgacgcct acttttgcac
     4981 tcccaaacga aacggggctg tttgaagcgg tttaaagttt tgggaatcaa gctcttaata
     5041 gtgatcagaa agtgagtagc ctgtgagggt tgacttagag gatcggatcc ttacacttta
     5101 caagttgagt tagcgaaggc tagcgagatg aagatctttg aaagaatgga agcaacagca
     5161 cttttacata cttaggtatg tagaggtaag gttagcgtaa caagaaagac aacaaaatcc
     5221 gacgttttaa tttcgagaga atttagaaag tcagattgaa caattcattt acaatggaga
     5281 gtttgatcct ggctcaggat gaacgctagc ggcaggctta atacatgcaa gtcgaggggc
     5341 agcacaggta gcaatactgg gtggcgaccg gcaaacgggt gcggaacacg tacacaactt
     5401 accttagagt gggggatagc ccagggaaac ttggattaat accccataaa acagggggcc
     5461 cgcatgggca tattgttaaa gatttatcgc tttaagatgg gtgtgcgtat gattaggtag
     5521 ttggtagggt aaaggcctac caagccgacg atcattaact ggtgtgagag cacgaccagt
     5581 cacacgggca ctgagacacg ggcccgactc ctacgggagg cagcagtaag gaatattggt
     5641 caatggacgg aagtctgaac cagccatgcc gcgtgaagga tgaaggtcct ctggattgta
     5701 aacttctttt atagggggcg aaaaagggcc attcttggtc aactgacggt accctatgaa
     5761 taagcaccgg ctaactccgt gccagcagcc gcggtaatac ggagggtgca agcgttatcc
     5821 ggatttactg ggtttaaagg gagcgtaggc gggtatgtaa gtcagtggtg aaagccctca
     5881 gcttaactga ggaattgccg ttgatactat atatcttgaa tatcgttgag gtttgcggaa
     5941 taggtcatgt agcggtgaaa tgcttagata tgacctggaa cacctattgc gaaggcagca
     6001 ggctaaacga tgattgacgc tgaggctcga aagcgtgggg atcaaacagg attagatacc
     6061 ctggtagtcc acgccctaaa cgatgattac tcgacattgg cgatacacag tcagtgtctg
     6121 agcgaaagca ttaagtaatc cacctgggaa gtacgaccgc aaggttgaaa ctcaaaggaa
     6181 ttgacggggg tccgcacaag cggtggagca tgtggtttaa ttcgatgata cgcgaggaac
     6241 cttacctggg ctagaatgct gggggaatgt gggtgaaagc tcacagtgta gcaatacacc
     6301 gccagtaagg tgctgcatgg ctgtcgtcag ctcgtgccgt gaggtgttgg gttaagtccc
     6361 gcaacgagcg caacccctat ctttagttgc caacaggtta agctggggac tctaaagaaa
     6421 ctgccgtcgt aagacgtgag gaaggagggg atgatgtcaa gtcatcatgg cctttatgcc
     6481 cagggctaca cacgtgctac aatgggtact acaaagggtt gccacctggt gacagggcgc
     6541 taatctcaaa aaagtactct cagttcagat cgtagtctgc aactcgacta cgtgaagctg
     6601 gaatcgctag taatcgtata tcagcaatga tacggtgaat acgttcccgg accttgtaca
     6661 caccgcccgt caagccatgg aagccggggg gacctgaagt cggtaaccgc aaggagccgc
     6721 ctagggtaag accggtaact ggggctaagt cgtaacaagg tagccatacc ggaaggtgcg
     6781 gctggaatac ctccttttta gagcagctga tctttttagt tgttgcttcc ttcattcttt
     6841 caaaaattag ttcttttaaa gaaagctcaa gaccttaaag agggtgaagc gaggtttgac
     6901 tcatcaggcc cctttgggga atttgagaga gagtctcgta gctcagttgg ttagagcgct
     6961 acactgataa tgtagaggtc cccagttcaa atctgggcgg gactacagga tggttgacgg
     7021 aagaaagttg actgttgatg gtttaagggc tgtcaactgg caacaatcaa ccatcaactg
     7081 ttaagggggt gtagctcagc tggctagagc acctgctttg caagcagggg gtcatcggtt
     7141 cgactccgtt cacctccaca gatctttggg tagagaagtt gataaggcta agggcctggc
     7201 agttcgcagc tgcattatca atcaacggct tttaagcccc ctttaggggg tttgggggtc
     7261 ataagttctt tgacatattg gaaaatcaaa ataggtaaca aaccgagtag aaaccttagt
     7321 gatagcaata tcactgaatt taaaaatttg aagattttta aagcgaataa gggcacatgg
     7381 tggatgcctt gggtctgaga ggcgaagaag gacgtggtaa gctgcgataa ggcaggggga
     7441 gctgcacaca agcgatatat ccctgcattt ccgaatggga caacccacca cgctgaaggc
     7501 gtggtactcg aaagagagcc aacctcctga actgaaacat ctaagtaggg agaggaaaag
     7561 aaaacaatag tgattcccaa agtagtggcg agcgaactgg gaatagccca aacctttgga
     7621 gcgtgctcca agggggttgt aggaccacat ttagaagtca acatcaatct gaacactttg
     7681 gaaagagtgg ccatagcagg tgacagccct gtagggggaa attgttgagg acgagtggta
     7741 tcctgagtag cgcgggaccg gaggaatctt gcgtgaaact gccagcacca tctggtaagg
     7801 ctaaatactc ctcagacacc gatagtggac cagtaccgta agggaaaggt gaaaagcacc
     7861 ctgaataagg gagtgaaata gtacctgaaa ccgtgtgcct acaagaggtc ggagctcgaa
     7921 agagtgacgg cgtgcctttt gcataatgag cctacgagtt agtcctcact ggcgaggtta
     7981 agttcttcag gaacggagcc gtagcgaaag cgagtccgaa tagggcgcat cagtcagtgg
     8041 ggctagacgc gaaactttgt gatctatcca tgggcaggct gaaggttagg taaaactaac
     8101 tggagggccg aacccgttga cgttgaaaag tcttgggatg acctgtggat aggggtgaaa
     8161 ggccaatcaa actgagagat agctcgttct ccccgaaatg tttttaggaa cagcgtcaca
     8221 tataagaagt ttattagagg tagagctact gattgggcta gggggcttca ccgcctacca
     8281 aaccctgaca aactccgaat gctaacagat atctccggga gtgaggctgc gggtgctaag
     8341 atccgtggcc gagagggaaa taacccagaa tagcagctaa ggtccctaat aagtagttaa
     8401 gttgatcaaa cgaggtagga cttctataac agccaggatg tttgcttgga agcagcaatt
     8461 catttaaaga gtgcgtaaca gctcactggt cgagaggtcc cgcacggaaa ataatcgggc
     8521 atcaaactac taaccgaagc tctatgatag ccacttcgtg gcatatcggt aggggagcat
     8581 tgaaacagca tcgaaggtgt acggtgacgt atgctggagc ggtttcaaaa gaaaatgtag
     8641 gcataagtaa cgataaacaa ggtgaaaaac cttgtcgccg aaagtctaag ggttcctgat
     8701 caacgttaat cggatcaggg ttagcccggt ccttagccaa acccgaaagg ggtaggtgat
     8761 ggaaagcagg ttaatattcc tgcgcctgct atgcaatgaa agggacggag agacgtggtg
     8821 gctacgtgcg gacggaagtg catgttgagc agaggcttcg gccaaagcga agtcataaaa
     8881 tctcttccaa gaaaagcgag tatagcagcc ggtaccgcaa accgacacag gtagacggga
     8941 tgaatattct aaggcgctcg ggtgagccgt ggagaaggaa ctaggcaaat tgacgctgta
     9001 acttcgggat aaagcgtacc atcttcggat ggtctcagta aattggttca accaactgtt
     9061 taacaaaaac acagggccct gcaaaatcga aagatgacgt atagagcctg atacctgccc
     9121 ggtgctggaa ggttaaggaa ggatgttcgg cgcaagccaa agcttctgac tgaagcccca
     9181 gtaaacggcg gccgtaacta taacggtcct aaggtagcga aattccttgt cgggtaagtt
     9241 ccgacctgca cga
//
LOCUS       DATIQF010000566         2192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_237291,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000566 DATIQF010000000
VERSION     DATIQF010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2192
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237291"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..197
                     /locus_tag="VLL95_09430"
     CDS             <1..197
                     /locus_tag="VLL95_09430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39120.1"
                     /translation="SHYSRTVNFHQHYSLGLYNYKTENKSTPLWKATLQINFDPTTQF
                     VYENIASEIIQKLTLNKSKH"
     gene            complement(236..937)
                     /locus_tag="VLL95_09435"
     CDS             complement(236..937)
                     /locus_tag="VLL95_09435"
                     /inference="COORDINATES: protein motif:HMM:TIGR00697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:1990397 - queuosine salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="queuosine precursor transporter"
                     /protein_id="HSR39121.1"
                     /translation="MKIFSLEKTLGLQPLDANVLGEVLSLNLSAGVLIWPVVFIMTDI
                     INEYYGQKGVRFLSFLTAGLIAFAFIIFLGAIRLAPADFFVTSKVGSGVPDMEKAYEN
                     VLGQGANIIVGSIAAFILSQLIDVVTFHRIKKVTGEKKIWLRATGSTLVSQFIDSFVV
                     LFIAFYVGSRLNASEGDFIWSFKLFVAVGLVNYTYKFIVAIIMTPVIYLVHNWIEDYL
                     GHDLAADMKKAAMQR"
     gene            1398..>2192
                     /locus_tag="VLL95_09440"
     CDS             1398..>2192
                     /locus_tag="VLL95_09440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39122.1"
                     /translation="MKIDLKKWVPHLIAIAIFLVVALLYCKPALEGKSVEQHDLIQWK
                     GMAQDAFDYKEKHGVFPLWTNGLFSGMPSYNIAFQSNAYIPAHIIKAMSLYLPEPFSY
                     FFLACICFYFLSQVLRVNPWIGILGSIGFAFCSYNPIIIATGHHTKMITMALMPALLG
                     ALILLYNKKYWLGGALTAAFTAALVVNNHLQIIYYILIVVLFMTVAYVIKWIKQGEIK
                     HMLLAGSIALGAAGVGALTSAVNLFTTYDYSKESMRGGKANLLPLTD"
BASE COUNT          610 a          570 c          475 g          537 t
ORIGIN      
        1 cttcacacta tagcagaaca gtcaatttcc accagcatta cagtctcggt ttatacaact
       61 acaagacgga aaataaaagc acgccgttgt ggaaagctac cctgcaaatc aactttgacc
      121 cgaccactca gtttgtatat gagaatattg ccagcgagat cattcagaaa ttaacactga
      181 ataaatcaaa gcattgaagc attgcaaacc aatgcaacgc agaagcaaaa tgacatcagc
      241 gctgcatcgc agccttcttc atgtcggcag ccaggtcgtg gcccaggtaa tcttcaatcc
      301 agttgtgtac caggtaaatc actggcgtca tgatgatagc cacaatgaat ttgtaagtat
      361 agtttaccag gcccacggct acgaaaagtt tgaatgacca gatgaagtcg ccttcactgg
      421 cattgagccg gctgcctaca tagaaggcga taaacagtac cacaaaactg tcgatgaatt
      481 gagacaccag tgttgagccg gtggccctta accatatctt cttctcccct gtcactttct
      541 tgatgcggtg gaaggtgacg acatctatca attggctgag gatgaaggcc gctatggaac
      601 ccacaatgat attggctccc tgacccagca cattttcgta agccttttcc atatcgggca
      661 caccgctgcc caccttgctg gtcacaaaaa aatcggccgg tgccaacctg atggccccca
      721 ggaaaatgat gaaagcaaag gcgataagac ctgccgtgag aaaactgaga aaccgcactc
      781 ccttctggcc gtagtactcg ttgataatgt ctgtcatgat gaacaccacg ggccagatca
      841 gtaccccggc gctcaggttc aggctcaaaa cttctcccag cacattggca tccagcggtt
      901 gcaggcccaa tgttttttcc agtgagaata ttttcacgcc tatgatttcc gcaacaatgg
      961 cattagcaat gaaaatcccg ccaagtatga tgaaaagccg ggtcggtttg ttgcgtatga
     1021 tattctggat cattggaaag tcaggaaaag caaggaaact atttgtaata atgttgaaag
     1081 tagaataaat acctgagcaa gcttattgtt cggccatccc tcctcatttt tctttttgag
     1141 ccatgccagc caatacaaga gattgccgac gaccgccaat gaggccaatg ccagcacggt
     1201 gctcaccagt accgttggcc aatggtcggc atacctgaaa agggcaaaag acgcgccgag
     1261 ccaccagcaa acattcatta ttaacaacaa cttcaggtac tgccgcttca tataccaacc
     1321 atattagcca aagcaggcaa aatactatta ttttgcctcg ccctgcaccg caggttcatc
     1381 caattcagac cgttattatg aagattgatt taaagaagtg ggtaccccac ctgattgcca
     1441 tcgccatttt cctggtagtt gcccttttgt attgcaaacc agccctcgaa ggaaagtctg
     1501 ttgaacaaca cgacctgatc caatggaaag ggatggcgca ggacgccttt gactacaaag
     1561 aaaaacatgg cgtatttccg ctgtggacca acggcctttt cagtggcatg ccttcgtaca
     1621 acattgcctt ccaaagcaac gcctacatac cggcgcacat cattaaagcc atgtcgcttt
     1681 acctgccgga gcctttcagc tatttcttcc tggcctgtat ctgtttctat tttctttcgc
     1741 aggtactacg cgtcaatccg tggataggca tactcggcag cattggcttt gccttttgca
     1801 gctacaaccc gataatcatt gctacggggc accataccaa aatgatcacc atggccctga
     1861 tgcctgcgct attaggggca ctcatcttgt tgtacaataa aaagtactgg ctgggtggtg
     1921 cactcacggc ggcattcacc gcagcactgg tggtaaacaa ccaccttcag atcatttact
     1981 acatcctcat cgtggtactg ttcatgactg tagcttatgt catcaaatgg attaagcaag
     2041 gcgaaataaa acacatgctg ctggcaggct ccattgcact gggtgctgca ggtgttggtg
     2101 cccttaccag cgccgtcaat ttgtttacca cctacgatta cagtaaagaa agcatgcgtg
     2161 gcggcaaagc caacttgctg ccactcaccg at
//
LOCUS       DATIQF010000567         1894 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_267773,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000567 DATIQF010000000
VERSION     DATIQF010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1894
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267773"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..591)
                     /locus_tag="VLL95_09445"
     CDS             complement(<1..591)
                     /locus_tag="VLL95_09445"
                     /inference="COORDINATES: protein motif:HMM:NF017669.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase HerA-like domain-containing protein"
                     /protein_id="HSR39123.1"
                     /translation="MSDTAKFLEAVQAGYTFKGEKVKLGRAMLDGQVVPGADVYLPLK
                     TMNRHGLIAGATGTGKTKTLQVISELLSDASVPVLLMDIKGDLSGIAAAGSSNPKIEE
                     RSKLLEISYQPTAYPSELLALGKDQPGVRLRATVSEFGPVLLSKILGLNDTQSGLVAM
                     LFKYSDDTKLPLLDLKDLKKLLQYATEEGKAELEKEY"
     gene            complement(665..>1894)
                     /locus_tag="VLL95_09450"
     CDS             complement(665..>1894)
                     /locus_tag="VLL95_09450"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HSR39124.1"
                     /translation="QTLEHEVVAMTAKMLHGNEEVVGVVSSGGTESILLAMFSYRQRA
                     AKLYPSITRPEVVAPATIHPAFDKAATLFGLTLRKAPVDENRRAIPGRMAKLINKNSI
                     LLVASAPSYPNGVLDPIEEIAALARQYQLPFHVDACVGGFMLPWLEKLGHKIPKWDFK
                     VHGVSSISADVHKFGFGAKGASVLAYTGMDYLKHQFILTTDFPGGIYVSPTILGTRPG
                     GPLAAAWAAMKHLGENGYLQLAQQLMDGANKLRKGLESIACIEVAGDPCMNIISYTTR
                     NNRPDIFVVADQLENKGWMVDRQQFPECIHLTVLPTNLPVIDNYLADLKDAIAFAEAH
                     PEATAKGNAALYGLMARIPFRGMVEKNVVKILEEMYSAGKFPTPEKEPEQKSIAENNP
                     AWMGRLSRFLSWLKRIK"
BASE COUNT          423 a          493 c          466 g          512 t
ORIGIN      
        1 gtattccttt tccagttctg ctttgccttc ttcggtagcg tactgcaaca gtttcttgag
       61 gtctttcaga tcgagcaacg gcagtttagt gtcatcgctg tatttgaaca gcatggcaac
      121 cagcccgctt tgcgtatcat tcaatcccaa tattttgctc agcagtactg gcccgaattc
      181 gctcacggtg gctctcaatc tcacaccggg ctggtctttt cccaacgcca ataattcgga
      241 aggataagcg gtgggctggt aggatatttc cagcaatttg ctgcgttctt caatcttggg
      301 attgctgctg ccggcagcgg caatgccact caggtcgcct ttgatgtcca tcagcaatac
      361 cggcacactg gcatcgctga gcagttcgct tattacctgt agtgttttgg ttttgccagt
      421 tcctgtggca cccgcaatca aaccatgccg gttcatggtc ttcagcggca ggtacacatc
      481 ggcacccggt accacctggc catcaagcat ggccctgccg agttttactt tttcaccttt
      541 gaatgtatag ccagcctgaa cggcttctaa gaatttggca gtatctgaca taggatgggt
      601 gtttgcgtta aagataaaag aaatgaatgc ttctgatttg aaagcttccg gtaacgcaaa
      661 cagattattt tattcgcttc agccacgaca ggaacctgct cagccgcccc atccacgcag
      721 ggttgttttc agcaattgat ttttgttcgg gctccttttc tggcgttggg aatttgccgg
      781 cactgtacat ctcctcgagg atcttcacta catttttttc taccatgccc ctgaaaggaa
      841 tgcgggccat cagtccatac agtgcggcat ttcctttggc agtggcttcc gggtgagctt
      901 ctgcaaaagc aatcgcatct ttcagatcgg cgaggtaatt atcaatcaca ggcaggttgg
      961 taggcaatac ggtgaggtga atgcattccg ggaattgctg cctgtctacc atccaccctt
     1021 tgttttccag ttgatcggcc accacaaaaa tgtcaggccg attattgcgg gtggtatacg
     1081 aaatgatatt catgcaagga tcgcccgcca cctcgatgca tgcaatggat tccaaacctt
     1141 ttcgcagctt gttggcgccg tccatcagtt gttgggccaa ttgcaggtaa ccattttcac
     1201 ccagatgttt catagctgcc cacgctgctg ccaggggacc gcccggccgg gtacccagta
     1261 tggttggaga cacataaatg cccccgggaa aatcggtagt aagaatgaat tggtgtttca
     1321 ggtaatccat gccggtgtag gccagtacag aagcgccttt ggcaccaaaa ccaaatttgt
     1381 gcacgtcggc agaaatagag cttactccat gcaccttgaa atcccatttc gggatcttgt
     1441 gtcccagttt ttcgagccag ggcaacatga aaccacctac acaggcatcc acatgaaagg
     1501 ggagctggta ttgcctggcg agtgcagcga tttcttcaat aggatcaagc acaccattgg
     1561 gataactggg tgcggaggca acgagcaaaa tgctgttttt gttgatgagc tttgccatac
     1621 gaccaggaat ggcccttctg ttttcatcca ccggcgcttt gcgcaaagtg agcccgaaca
     1681 aagtagcggc tttgtcgaat gcaggatgaa tagtggcagg tgccaccacc tccggcctgg
     1741 ttatggatgg ataaagtttg gcagcccgct gccggtagct gaacatagcc agcaggatgc
     1801 tttccgttcc gccgcttgat accactccca ccacctcttc atttccatgc agcattttag
     1861 cggtcatggc taccacttcg tgttccagtg tctg
//
LOCUS       DATIQF010000568         3506 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_191556,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000568 DATIQF010000000
VERSION     DATIQF010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3506
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191556"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            188..1093
                     /locus_tag="VLL95_09455"
     CDS             188..1093
                     /locus_tag="VLL95_09455"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HSR39125.1"
                     /translation="MQKPTLVILAAGMASRYGKMKQIEGFGPSKETIMDYSIYDAIRA
                     GFEKVVFIIREEFEEQFKAIMEPKLKGRIKTEYVFQHLTDFVPADAAINPERSKPWGT
                     AHAVLCARDVVKENFVVINADDFYGQDGFRKAYEFCTTACNDQQYGIIGYTLWKTLSK
                     NGSVSRGVCKADASGNLVSIAERTKIYFKGEEVFYEEESQEFPEDPQSPVSMNFWCFS
                     PGVFQLSEQLFEQFIRERGMELKAEFFIPIVADYFIQQKLGTIKIVPTEAEWFGVTYP
                     EDAPTVESSISKLVAEGQYPTALWS"
     gene            complement(1164..1979)
                     /locus_tag="VLL95_09460"
     CDS             complement(1164..1979)
                     /locus_tag="VLL95_09460"
                     /inference="COORDINATES: protein motif:HMM:NF024484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3943 domain-containing protein"
                     /protein_id="HSR39126.1"
                     /translation="MEVHSGTIKTEWEGKPIKTTQPESISPFNKKQAFLSEIQTTDQL
                     NALIGESRSELATSKGQQTGKKFNLTYRQVVNYLHTTFPATPADEVQSLRNANSPFMK
                     KAGRGALLIGGVEVIGMVTLILMPREITKWEEDWMKAAGRNYTRAFTSPPVMDQDDWA
                     INYIGHPVAGAYYYNAVRSQNATWWQSFLFSTVQSFIWEYFIEGCAEQPSIQDLIVTP
                     IGGMALGEPAHQATMAMRRNGFNFIEKVVTFIINPMFVLNNGYRTPFLAKPWP"
     gene            complement(2203..3243)
                     /gene="murB"
                     /locus_tag="VLL95_09465"
     CDS             complement(2203..3243)
                     /gene="murB"
                     /locus_tag="VLL95_09465"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: protein motif:HMM:NF000755.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HSR39127.1"
                     /translation="MITFDSQMNISFHTDLRPYNSFHISTTAAGFAAFSNLAMLQELL
                     EMPAAKQFARTLLLGGGSNILFTQPFDGLILKNEIDGIEVVEETDDHVLVKAGGGVVW
                     HHFVMHAVANNWGGVENLSLIPGCVGASPIQNIGAYGVEIKDVLHSLEAYHLKDASLA
                     RFTSADCGFGYRDSVFKKKFKGEFAILSVTFRLNKHPRLNTSYGAIEQELERMGISDP
                     TIREVSAAVINIRQSKLPDPDKIGNAGSFFKNPVISNEQFDEIKKLYPGVPGFAGAEG
                     TTKMPAAWLIEQCGWKGYRHNDAGVHQWQPLVLVNYGNATGKEIFDLSERILQSVKQR
                     FGIDLEREVNIC"
     gene            complement(3244..>3506)
                     /locus_tag="VLL95_09470"
     CDS             complement(3244..>3506)
                     /locus_tag="VLL95_09470"
                     /inference="COORDINATES: protein motif:HMM:NF037182.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39128.1"
                     /translation="DHLTSWKAAESLAAMLRMKYAQHVTVPAEPPVNRIRNLYISEIL
                     LKLPRNSEYLAEVKKYIFECIAEMLHQPDYKTVFVSIDVDPQ"
BASE COUNT          895 a          801 c          862 g          948 t
ORIGIN      
        1 gaaagtttca gccatttgtt gcccgagacc aaagggtgca acaggtccag ccgcagcatc
       61 cacagctcca attctttttt cagaaaatat tcacttttca atggctgcag caaggaggag
      121 ggagcaggaa actgtaaaaa tgccatagcg tgaactctta tcttcgcgaa gtttttaaaa
      181 atagcgtatg caaaaaccaa ctctggtgat tctggcggca ggcatggcca gccgatatgg
      241 gaaaatgaag caaattgaag gctttggccc cagcaaggaa accatcatgg attattccat
      301 ttatgatgcc atccgtgccg gctttgagaa agtggtgttt attattcgtg aagagtttga
      361 agagcaattt aaggccataa tggagccaaa gctcaagggt cgcatcaaaa ccgaatatgt
      421 atttcagcac ctcactgatt ttgtgccagc agatgccgcc atcaatcctg agcgttcgaa
      481 gccctggggc accgcccacg ccgtgctttg tgccagggat gtggtgaaag agaatttcgt
      541 tgtgatcaat gccgatgact tttacgggca ggatggtttc aggaaggcat atgaattttg
      601 taccaccgcc tgcaacgatc agcaatatgg catcattggc tatacacttt ggaaaacgct
      661 gagcaagaat ggcagtgtaa gccgcggtgt ttgcaaagca gatgcgtcgg gcaacctggt
      721 gagcattgcc gaacgtacca agatttactt caaaggggaa gaggtgtttt acgaagaaga
      781 aagccaggaa tttccggaag atccgcaaag ccctgtcagc atgaattttt ggtgtttttc
      841 acccggtgta ttccagttgt ctgagcaatt atttgagcag tttattcgcg aaagaggcat
      901 ggaactcaaa gctgagtttt tcatccccat cgttgccgat tattttatcc agcaaaagtt
      961 aggcaccatc aaaatagtac ccaccgaggc agaatggttt ggcgtcacct atcccgagga
     1021 tgcgccaacg gtagagtcca gcatcagtaa actggtggca gaaggccaat acccaactgc
     1081 actttggagt taattatttc agctcgattt caaaatagta aaggcgtccc ttgtgacgcc
     1141 ttttgttttg ctggggcatt tgtttatggc cacggctttg cgaggaaggg cgttcgatag
     1201 ccgttgttga gtacaaacat gggattgata ataaaggtga ccaccttttc aatgaaattg
     1261 aatccattgc gacgcatggc catagttgcc tggtgcgcag gttcgccaag cgccatgccg
     1321 ccgattggag ttacaataag gtcctggatg ctgggttgtt cagcgcaacc ttcaataaag
     1381 tattcccaga tgaatgattg caccgttgaa aaaaggaatg actgccacca ggtagcattc
     1441 tggcttctga cggcgttgta atagtaagca ccggcaacag ggtgcccgat atagttgatg
     1501 gcccagtcat cctggtccat caccggcggc gaagtaaaag cccttgtgta gttgcgtcct
     1561 gcggctttca tccagtcctc ttcccatttg gttatttccc ttggcattaa aatcagggtt
     1621 accatgccta ttacttccac accgccaatc aacaaagcgc cacgtcctgc ttttttcata
     1681 aagggactgt tggcatttcg caaggactgc acttcatcag caggggtggc aggaaaagtg
     1741 gtgtgcaggt aattaacaac ctgccggtaa gtcaaattga atttctttcc cgtttgttga
     1801 cctttgctgg ttgccagttc acttcgtgat tccccaatca acgcattcaa ctgatcggtg
     1861 gtttgtattt ccgacagaaa ggcctgcttt ttattaaaag gggatatgga ttctggctgg
     1921 gtagtcttaa ttggcttacc ctcccattca gtttttatgg taccggagtg gacctccatt
     1981 cctgatgaat aggcgattga ctgacccatt gcatgccttg ggataagggc aaacaagtag
     2041 agtgcggaaa tcaatattct aaataagcag gtcaataggt gtttgaaaca gtcaataatt
     2101 gttctactga aattaagccg ctccgcactt ttcaatcatg ataaatgtaa ggttttatag
     2161 gggtgcgcca tttttttggt tgaaagaacg gtgacttatg tatcaacaaa tattcacctc
     2221 ccgttccaag tcaatgccga agcgctgctt tacgctttgc aggatgcgtt ctgataaatc
     2281 aaagatttcc ttgcctgtgg catttccgta attcacgagc acgaggggtt gccattggtg
     2341 tactccggcg tcgttatggc gataaccttt ccagccacat tgctcaataa gccaggcagc
     2401 gggcattttg gtggtgccct ccgcacccgc aaagccgggt acgccgggat acaatttctt
     2461 tatttcatcg aattgttcgt tgctgatcac agggttcttg aaaaaactgc ctgcattccc
     2521 gattttgtcc gggtctggaa gtttcgattg gcgaatattg atgacagcag cactcacttc
     2581 cctgatggtg ggatcactga tccccatcct ttcaagttcc tgctcaatgg caccatagct
     2641 ggtgttgagc cgtgggtgct tattgagtcg gaacgtgaca gacaggatgg cgaattctcc
     2701 tttgaatttt ttcttgaata cgctatcacg gtagccaaaa ccacaatcgg cacttgtgaa
     2761 ccgggccagg ctggcatctt tcaggtgata ggcttccagg ctgtgcaaca catctttgat
     2821 ctccacgcca taggcgccaa tgttttgaat gggagaggca cctacgcatc ccgggatcaa
     2881 tgaaaggttt tcaacgccgc cccaattgtt ggccacagca tgcattacaa aatgatgcca
     2941 tactaccccg ccgcctgctt tcaccaacac atgatcatcc gtttcttcca ctacttcaat
     3001 accgtcaatt tcattcttca ggataagccc atcgaagggc tgagtaaaaa ggatgttaga
     3061 gccaccgccc aacaataggg ttcgggcaaa ttgttttgca gcgggcattt ccagcagttc
     3121 ctgcaacatt gccaagttgc tgaatgcagc aaaacccgcc gcagtggtgc tgatgtggaa
     3181 ggagttgtag gggcggagat cggtatgaaa actgatgttc atttggctgt caaaggtgat
     3241 cacttattgt gggtcaacgt cgatagaaac aaaaactgtc ttgtagtctg gctggtgcag
     3301 catttccgca atgcattcaa aaatgtactt tttcacttct gccaggtatt cactgttgcg
     3361 aggcaacttg agcaatattt cactgatgta caaattgcga atgcgattca ccggtggctc
     3421 ggcagggact gtaacgtgtt gggcgtattt cattcgcaac atggcagcca gcgattcggc
     3481 agctttccaa gaagtaaggt gatcct
//
LOCUS       DATIQF010000569         7046 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_282594,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000569 DATIQF010000000
VERSION     DATIQF010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7046
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282594"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            303..1079
                     /locus_tag="VLL95_09475"
     CDS             303..1079
                     /locus_tag="VLL95_09475"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSR39129.1"
                     /translation="MQYEIKQKDKFKYIDEGSGEPLLLLHGLFGALSNFKDLIEHFRR
                     THRVIVPMLPLFELDIFHTTVGGLEKHVQKFIEAMDLRDIHLLGNSLGGHVALVHILK
                     HPERIKSLILTGSSGLFENGMGDTYPKRGDYEYIRKKTEMTFYDPAIASKELVDEVFE
                     ITNNRLKVIKIIALAKSAIRNNLGEELNQIKQPTLLIWGNNDIITPPFVGKEFQKLIP
                     NSELHFIDKCGHAPMMEVPEEFNQILDKFLTKLNQPATVA"
     gene            1092..1751
                     /locus_tag="VLL95_09480"
     CDS             1092..1751
                     /locus_tag="VLL95_09480"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HSR39130.1"
                     /translation="MLNQQLISPEISPLQPGQTVEEALLKMQDLLVSHLPVVQDSTFL
                     GLIAADDLLDANPADTLSALQHDLQPFAVNADEHFSLAVRAMASRQLSVIAVVGANRE
                     YAGTISREKLFVQLANQTGMLTGGAMVVATMEPHQFSISELSKLVETNDAHITQLNTV
                     IDEMSGHLTVTLRINKQEVSDVIATLQRYDYHVLYYSGEEHYENELRRNYNHLMNFLT
                     I"
     gene            1797..3233
                     /locus_tag="VLL95_09485"
     CDS             1797..3233
                     /locus_tag="VLL95_09485"
                     /inference="COORDINATES: protein motif:HMM:NF018899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HSR39131.1"
                     /translation="MHKKLVAIWCVLLCATCAVNAQGVNAEILSVSKDSMNSTDLQFD
                     SATYYVRTVVIKGNKKTKDNIAFREVAVKQGQSYSGRDLHRLLRLSREQLMNTTLFIN
                     VNVATYKVQGGTIDVEFTVNERWYIFPVPYFKVVDRNWNVWIKDYGASLDRTQFGLKM
                     LHNNTTGRNDKFNLWVIAGYTQQLEFKYQLPYVDQKMENGFTVGMSYGRNRELNYATD
                     SNRQQFFTLPDFGRQFIRAELTYSNRKGSQQRFYLRNIYGFEKIDSAFFKLNPNYLSG
                     RTQASFYDLMAAYQYLNVDYIPFPLRGWYVDFYALNRFSSVIPMTQVGGRMLATWAFL
                     PKTYINFQSAFVYTLQKHQPFFNQRLMGYGSLWMQGLEYNVMDGTFGVIGRTTIRRKL
                     FTYNFVGPEKWKAYSRIPFTFYLKTFGNIGYAYHVNPGNNFMNNRFLHTAGFGLEIAT
                     IYDMVFKLDYSFNQFGQSGFFIHTSADF"
     gene            3318..4196
                     /locus_tag="VLL95_09490"
     CDS             3318..4196
                     /locus_tag="VLL95_09490"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF002521.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HSR39132.1"
                     /translation="MKVALYSRGIEPEHEVHFKALLQELYLHKATIVVYSGLLTPQLQ
                     AALHRYDHDVFSSSDQLDDSIDCLISLGGDGTMLDSAILIRDKGIPLLGINFGRLGFL
                     ATMGKEEIKRVVEALTSRGYLIDQRTLVHVDADVPLFADAPFALNEFVLHKRDFSSMI
                     KVHTYLNGEFLNTYWADGVIVATPTGSTGYNLSCNGPIVFPESQSLVITPIAPHNLNV
                     RSIIVPDNNVVSFEVEGRAEDFMCAMDARREIVKMGVQVAIRKEHFSISLLRLNENTF
                     LETLRNKLTWGLDKRN"
     gene            4330..5184
                     /locus_tag="VLL95_09495"
     CDS             4330..5184
                     /locus_tag="VLL95_09495"
                     /inference="COORDINATES: protein motif:HMM:NF039345.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6089 family protein"
                     /protein_id="HSR39133.1"
                     /translation="MIRKWILALGLGMTLQTGSAQLYESTVLNGEFGLAVGAAHYFGD
                     LNTDARLNRPKLAVSALFRRQFGNYIAVRLQGTFAQLGYSDVHSKNEVQRIRNLSFNT
                     NIFELAVMGDFNFFRFIPGEREFRFTPYVSIGAGFFTFDPYAYLNNEKYFLRPLGTEG
                     QGSALFPDRTAYGSTAFVFPLGVGIKYNITPSINLTFEISHRFTTTDYLNDVSTTYAG
                     VAAFPSLPDGSPSPAQLLQDRSYELVNPPIGIAGRQRGISTAKDQFVTAMIGVTFNLT
                     SYRCPTAN"
     gene            complement(5284..6114)
                     /gene="tsf"
                     /locus_tag="VLL95_09500"
     CDS             complement(5284..6114)
                     /gene="tsf"
                     /locus_tag="VLL95_09500"
                     /inference="COORDINATES: protein motif:HMM:TIGR00116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HSR39134.1"
                     /translation="MSTVTITAADINKLRQATGAGMMDCRKALTETNGDFEAAIDWLR
                     KQGQKIAAKRSDREAKEGVVIAQSTADHKTGISLCISCETDFVSKNADFVAFAQSIAD
                     AAIANNVKSVEELNEVSVNGAKVSDLINDKLASIGEKIGVSKFERIDAEYVASYIHGA
                     YRMGVLVGLSKEAAEAGKDVAMQIAAMNPLAIDANSVPAETVERERAIVIEQMKNDPK
                     MAGKPDEMIAKIAEGKLNAFFKENTLMQQPFVKDGGKTVAEFLGADLKVTAFKRVALG
                     "
     gene            complement(6353..>7046)
                     /gene="rpsB"
                     /locus_tag="VLL95_09505"
     CDS             complement(6353..>7046)
                     /gene="rpsB"
                     /locus_tag="VLL95_09505"
                     /inference="COORDINATES: protein motif:HMM:TIGR01011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HSR39135.1"
                     /translation="KKIMFVATKKQAKEIVTESAQRVNMPYVTERWLGGMLTNFNTVR
                     KSVKKMQSIEKMLNDGTLESITKKERLTLTRDKEKMEKVLGGIANMSRIPAALFLVDI
                     GHEHIALAEAKRLGISTLGMVDTNCDPNKVDYAIPANDDATKSIAIIVNYLTAAIAEG
                     LAERQAAKDEDTEEEVVEAGSRFEAEEGGEDRDRSGRSRGRGPGHGGAPRRRVANAGG
                     GGRKPATGGGAR"
BASE COUNT         1672 a         1840 c         1772 g         1762 t
ORIGIN      
        1 tgggatacct gtctgccgag gtaaaagaag cttctgtgac ctacgaggga ttgcagccat
       61 tggctcccac catcatgaac tggatcggca agatcattcc tgttttcaca gacctgtttg
      121 aggaactgga atcggttttt gatcaactgg cacattcaac taacgcaaaa tgaatgctgt
      181 atgcgcacag attgcatgca gtgggtaagg tcaaatcctt tattttagcg gcattcaaga
      241 aagagcagta gataagaatg aatcaactaa ttttactact actgtaaact ttggagtgtt
      301 tgatgcagta cgagataaaa cagaaagata agtttaagta catagacgaa ggcagtggcg
      361 agccattgct gttgctgcat ggattgtttg gcgccctcag caatttcaag gaccttattg
      421 aacatttcag gcgtacccac cgggtaattg tgccaatgct gccactgttt gagctggata
      481 tttttcatac cactgttggt ggccttgaaa agcatgtaca gaagttcatt gaagccatgg
      541 acctgcgtga cattcacctg ctgggcaaca gcctgggcgg tcatgtggcg ctggtacaca
      601 tcctgaaaca tcccgaacgc atcaaatcac tgatccttac cggcagttcc ggcttgtttg
      661 agaatggcat gggcgacacc taccccaagc gtggcgatta tgaatacatt cgtaagaaga
      721 ccgagatgac tttttacgac ccggccattg cttccaagga attggtggat gaagtatttg
      781 agatcaccaa caaccggctg aaagtcatca agatcatagc gctggccaag agtgccatcc
      841 gcaacaacct gggcgaggaa ctgaaccaga tcaaacagcc cacgttattg atatggggca
      901 acaatgacat catcaccccc ccgtttgtag gaaaagaatt tcagaaactg atacccaaca
      961 gcgaattgca tttcattgac aaatgcgggc acgctcccat gatggaagtg cctgaagagt
     1021 ttaaccagat actcgataaa ttcttaacaa aactcaatca gccggccacc gtggcgtaac
     1081 gttgtacttc tatgctgaac caacagttga tatcgcccga aatctcaccg ctacagccag
     1141 ggcaaactgt tgaagaggcc ttgttgaaga tgcaggactt attggtgagc cacctgcctg
     1201 tggtgcaaga cagcactttc ctggggctga ttgcagcaga cgatttactg gacgccaatc
     1261 ctgcagatac actcagtgcc ttgcaacatg atcttcagcc gtttgcggta aatgccgatg
     1321 agcatttttc gctggcagta cgcgccatgg ccagccgaca gttgtcggtg attgcagtgg
     1381 tgggtgccaa ccgtgaatat gcaggtacca tcagccgtga gaaactattt gttcaactgg
     1441 ccaatcagac cggcatgctc accggcggag ccatggtagt agccacaatg gaaccccacc
     1501 agttctccat cagtgagctg agcaagctgg tggaaacaaa tgatgcccat attacccaac
     1561 tcaatacggt aatagatgaa atgagcggtc acctgaccgt caccctccgc atcaacaaac
     1621 aggaagtgag cgatgtgata gccaccctgc aacggtacga ttaccatgtg ctgtattatt
     1681 ccggcgaaga acattatgaa aacgagttgc gccggaatta caaccacctt atgaattttc
     1741 tcaccattta accgtctgtc ggcacttttt tcttcgcaat tttatgcggt tagctcatgc
     1801 acaaaaaact ggtggcgata tggtgtgtat tgttgtgcgc aacttgtgcg gtgaatgcac
     1861 agggggtgaa tgcagaaatc ctgtctgttt ccaaggatag catgaactcc accgatctgc
     1921 aattcgactc cgcgacctac tacgttcgta cggtggtcat caaaggcaac aaaaaaacca
     1981 aggacaatat tgctttccgc gaagtagccg taaagcaggg gcagtcgtac agtggcaggg
     2041 acctgcaccg gctgctgcgg ttgagccggg agcaactgat gaataccacc ctgttcatca
     2101 atgtgaacgt ggcaacttat aaagtgcagg ggggcaccat tgatgttgaa ttcacagtga
     2161 atgaacggtg gtacattttc ccggtaccgt attttaaagt ggtggaccgc aactggaatg
     2221 tgtggatcaa agactatggc gccagcctcg acagaaccca gtttgggctc aaaatgctgc
     2281 acaacaatac cacggggcgc aatgacaaat tcaacctgtg ggtgatagcc ggctataccc
     2341 agcagttgga attcaaatac caacttccct atgttgacca aaagatggag aatggattca
     2401 ccgtgggcat gtcgtatggt cgcaaccgtg aactcaatta tgccaccgac agcaaccggc
     2461 agcagttttt tacgttgccc gattttggac ggcagttcat cagggctgaa cttacctatt
     2521 cgaaccgcaa gggcagccag cagcgctttt acctgcgcaa tatctatggg tttgaaaaga
     2581 tagattcagc ctttttcaaa ctcaatccca attatctcag tggcagaacg caggcctcgt
     2641 tctatgacct gatggctgcc taccaatacc tcaacgttga ctacatcccg ttccctcttc
     2701 ggggctggta tgtcgacttt tacgccctca accgcttctc ttctgttatt cccatgacgc
     2761 aggtaggcgg caggatgctg gccacctggg cattccttcc caaaacctat atcaactttc
     2821 aaagtgcctt tgtctatacc ttacaaaagc accagccttt cttcaaccag cggctgatgg
     2881 gatatggcag cctttggatg caggggctgg aatacaatgt gatggacggc acttttgggg
     2941 taattgggcg caccaccatc cgccgcaaat tgttcaccta caattttgta ggacccgaaa
     3001 aatggaaagc ttacagccgc attcctttta ccttctacct gaagaccttt ggcaatattg
     3061 gctatgctta ccatgtgaat cccgggaaca atttcatgaa caacaggttt ctgcacactg
     3121 cggggttcgg cctggagatt gccaccattt atgacatggt attcaaactc gactacagtt
     3181 tcaaccagtt tgggcaaagc ggattcttca ttcacacttc tgccgatttc tagcagccat
     3241 cctcggttga caatcaatta gttcctaact tgtacgccgg ttgtgccgta catactgcct
     3301 gccgatcaca tgacatcatg aaagtagccc tttacagccg gggcatagag cccgagcatg
     3361 aagtacattt taaggcactg ttgcaagaac tgtacctgca taaagccaca atagtggtgt
     3421 acagcgggct gcttacgcca cagctccagg ctgccctgca ccgttatgat cacgatgttt
     3481 tcagcagctc ggaccaactg gacgattcca tcgattgcct gatcagcctg ggaggcgatg
     3541 gcaccatgct tgattctgcc atcctcattc gcgacaaagg catccccctg ctgggcatca
     3601 attttggccg gttgggcttt ttggccacca tgggcaagga ggagatcaaa agagtggtgg
     3661 aagccctcac cagccgtggc tacctgatag accagcggac cctggtacac gtggatgccg
     3721 acgtgcctct ttttgccgat gcgccctttg ccctcaacga gtttgtattg cacaaacgtg
     3781 acttctcgtc catgatcaag gtgcacacct acctcaacgg agaattcctt aatacctatt
     3841 gggccgatgg tgtgattgtg gctacgccca ccggcagcac ggggtacaac ctgagttgca
     3901 acgggcccat tgtattccct gagagccaga gcctggtgat caccccgatt gcgccacaca
     3961 acctgaacgt ccgctccatc attgtgcccg acaacaacgt ggtgtcgttt gaagtggaag
     4021 gccgggcgga ggatttcatg tgtgccatgg acgcccgtcg tgaaattgta aaaatggggg
     4081 tacaggtggc catccgcaag gaacatttca gcatcagcct gttgcgtctc aatgaaaaca
     4141 ctttcctgga aaccctgcgc aacaaactca cctggggtct cgacaaacgc aattgaagcg
     4201 gaggagaatg aggccgcggc cgctttattt tttcacaacg gccttaaaat tctgaataga
     4261 gcccttgcgg ctggtatacc aaaagttagc ggcggtcgtt taagtgggga acgcgattat
     4321 tttgcaagca tgatcaggaa atggatactg gcattgggat tgggaatgac tctgcaaacg
     4381 ggatctgccc agctttatga gtccacggta ctcaatggtg agtttggact ggccgtgggt
     4441 gccgcccatt attttggcga cctcaatacc gacgcccggc tgaaccgtcc caaactggcg
     4501 gtatcggcat tgttccgccg gcagtttggc aattacattg ccgttcgcct gcagggcact
     4561 tttgcccagt tgggttacag cgatgtacac agcaaaaacg aagtgcagcg cattcgcaac
     4621 ctcagcttca acaccaatat ttttgagctg gccgttatgg gcgactttaa tttcttccgc
     4681 ttcattcccg gcgagagaga attccgtttc accccctatg tttccattgg tgccggcttt
     4741 ttcaccttcg acccttatgc ctatctcaac aatgagaaat actttttgcg gcctcttggc
     4801 actgaagggc agggcagtgc ccttttcccc gacaggacag cctatggcag caccgcattt
     4861 gtttttccgt tgggtgtagg catcaaatac aacatcaccc ccagcatcaa tctcaccttc
     4921 gagatctcgc accggtttac caccaccgac tacctcaacg atgtgagcac tacctatgca
     4981 ggggtggccg cttttcccag ccttcctgat ggcagccctt cacccgctca actgctgcag
     5041 gaccgcagct acgaactggt aaacccgccc atcggcattg ccggcaggca aaggggtatc
     5101 agcactgcca aagaccagtt tgtaaccgcc atgatcgggg tcacgttcaa cctgacctcc
     5161 tatcgttgcc ccactgccaa ttgatccgct ttcttaaacc ccatcataca actccacaat
     5221 cagaaaggcc caccttacgg cgggcctgtt ctgttttatc gcgttgcatt gataacggag
     5281 tgattagccg agggctaccc gcttgaaggc agtcaccttc agatcggcac ccaggaattc
     5341 ggctacagtc ttgccaccgt ctttcacgaa aggctgctgc atcagggtgt tctctttgaa
     5401 gaaagcattc agtttgcctt cagcgatctt ggcgatcatt tcatcgggct tgccagccat
     5461 cttggggtcg ttcttcattt gctcgatcac gatggccctt tcgcgttcta ctgtttcggc
     5521 aggcacgctg ttggcatcaa tggccagcgg gttcatggca gcaatttgca tggccacatc
     5581 cttacccgct tcggcggctt ctttgctgag gcctacgagt acgcccatgc ggtaagcacc
     5641 gtggatgtaa gaagctacgt attcagcatc gatgcgctca aacttgctta caccgatctt
     5701 ttcgccgata gaagccagct tgtcgttgat gaggtcgctc actttggcgc cgtttacgct
     5761 tacttcattc agttcttcca cgcttttcac gttgttggcg atggcagcat cggcgatgct
     5821 ttgggcgaag gccacgaagt cggcgttctt tgatacgaag tcggtttcgc agctgatgca
     5881 cagggagatg ccggttttgt ggtcggcagt gctttgcgca atgacaaccc cttctttggc
     5941 ttcgcgatca ctgcgcttgg cagcaatctt ctggccctgc ttgcgcagcc agtcgatggc
     6001 cgcttcaaaa tcaccattgg tttcagtcag cgctttgcgg cagtccatca taccggcacc
     6061 agtagcctgg cgcagtttgt tgatgtcggc agcggtaata gttacagtag acatatcttt
     6121 tgtatttgaa ttgttactta agtgaatggg tcaatgagtg aataggtcaa tgggtgaatg
     6181 agtgaatgcg aagagggtgt gggtaaagac aatgctccgg cagcgtcggg caaaattcaa
     6241 tttgtcaaag cgcaaaccgg agcatgatgg tttgatttta tggaatcagc gtgatgctga
     6301 tcgggtcaca aacggataac cgcagcttcg gccagagggc ttgaagcagt gattatcttg
     6361 cgccaccgcc ggtagcaggc ttgcggccac cgccaccagc attggccacg cggcgacggg
     6421 gagcgccacc atgaccaggt ccgcggccac ggctgcgacc actgcgatcg cggtcttcac
     6481 caccctcttc ggcttcgaag cgggaaccgg cttccaccac ttcctcttcg gtatcctcgt
     6541 ctttggcagc ctggcgctca gccaaacctt cggcaatagc ggcagtgagg tagtttacga
     6601 tgatggcgat agacttggta gcgtcgtcgt tggcaggaat ggcgtagtcc actttgttgg
     6661 ggtcgcagtt ggtatccacc atacccaggg tagagatgcc caggcgcttg gcttcggcca
     6721 gtgcgatgtg ctcatgaccg atatccacca ggaacaaggc ggcaggaatg cggctcatgt
     6781 tggcgatacc gccgagcact ttttccattt tttccttgtc gcgggtcagc gtcaggcgtt
     6841 cttttttggt gatgctttcg agggtaccat cgttcagcat tttttcgatg ctctgcattt
     6901 tcttcacgct tttgcgaacg gtgttgaagt tggtgagcat gccacccagc caacgctcgg
     6961 taacataagg catgttcacc cgctgggcgc tttcggtcac gatttccttg gcttgctttt
     7021 tggtagccac gaacatgatc tttttg
//
LOCUS       DATIQF010000570         2788 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_54808, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000570 DATIQF010000000
VERSION     DATIQF010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2788
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54808"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(94..717)
                     /locus_tag="VLL95_09510"
     CDS             complement(94..717)
                     /locus_tag="VLL95_09510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39136.1"
                     /translation="MKRMACLMVVALMSLSYGKAQTSDSADAKSWSVNASLGIILFPE
                     DVFLMPIVVADKGKLHLVSRYNYEDLNTFSLFGGYNFTGGKKLQYRITPMLGFVVGNT
                     DSIAPGLEVDLSLGKFRFYTEDEYVFEFNDKANSFFYSWSELSFAPKEWFWFGISWQR
                     LRPYQSDRVVEKGFTAGFAFNRFAVQGYYFNPGSETQFGIVNLSVSF"
     gene            complement(748..1425)
                     /locus_tag="VLL95_09515"
     CDS             complement(748..1425)
                     /locus_tag="VLL95_09515"
                     /inference="COORDINATES: protein motif:HMM:NF014090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005384 - manganese ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030026 - intracellular manganese ion
                     homeostasis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HSR39137.1"
                     /translation="MAVDTFWKRIIYRPGPVLDPISRLSEVIFGLIMVLTFTGSISAA
                     TAGRQEIRTILWAALGCNVAWGIVDAFMYIMSLLMERGDAAAALRKVQQSGNTAEATE
                     VLKDYFPPVVGAVMKAPQFEDIRQELKQLPEPHHHIPILWHDIRAAIQIFFLVVLSTF
                     PSTIPFLLIDDAVVAMRTSNGIALLLLFLTGFMLGKRTGYSPWFLGIVVAVVGAVLVV
                     MTMALGG"
     gene            complement(1437..2534)
                     /gene="cax"
                     /locus_tag="VLL95_09520"
     CDS             complement(1437..2534)
                     /gene="cax"
                     /locus_tag="VLL95_09520"
                     /inference="COORDINATES: protein motif:HMM:TIGR00378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015368 - calcium:monoatomic cation
                     antiporter activity [Evidence IEA];
                     GO_process: GO:0006816 - calcium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/proton exchanger"
                     /protein_id="HSR39138.1"
                     /translation="MKKLLKPSIFWLFVFIPITLLLEQTGAGDTTIFFCSAMAIIPIA
                     KLIGESTENLAHYTGDAIGGLLNATFGNATELIIGLIALHAGLYDMVLASIIGAILAN
                     LLMAIGISFLLGGMKHHTQEYNPVTIRVYSSMMFIAVFSMIIPSGFNRFLGTNEAYRQ
                     QEMNLNVLLAVFLLLAYVLYLFFMIKTHPDYFKSVDTGEGAGEEHAKPWSVKLAVSML
                     VAASVGAAFMSEILVGAAEGTGKALGMSTAFIGIVFVAVIGGAAESISAITMASKNKL
                     DLTMSIALGSSIQIALFVAPLLVLMSFVLGPQPLVLSFNRAEVVAVLMAVLLTTVIAG
                     DGKSNWYKGIQLVTLYLLIALLFYFVPDISK"
     gene            complement(2568..>2788)
                     /locus_tag="VLL95_09525"
     CDS             complement(2568..>2788)
                     /locus_tag="VLL95_09525"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HSR39139.1"
                     /translation="VIDNVVKPILIGKSGKLPILVLFLGVIGGMSQWGFTGMFKGAII
                     LSVAYALFQSWFTFKKETVSELAAEKTE"
BASE COUNT          807 a          723 c          619 g          639 t
ORIGIN      
        1 ttgattgatg tggcgataat aatccagtgt actcagccag gttaggcctc caaccagtcc
       61 aatagttttc atactgtgaa tgtagccgaa agttcagaag ctcaccgata gattgacaat
      121 gccgaattgc gtttcggaac ccgggttaaa atagtagcct tgcaccgcga agcgattgaa
      181 ggcaaagccg gcagtgaagc ccttttccac caccctatcg ctttgataag gacgcagccg
      241 ctgccaggat atgccaaacc aaaaccattc tttgggtgca aacgacaatt cagaccagct
      301 gtagaaaaaa gaattcgctt tgtcgttgaa ctcaaacacg tattcatctt ccgtgtaaaa
      361 tctgaatttt cccaggctga ggtctacctc aaggccaggg gcaatactat ctgtattgcc
      421 aacaacaaag ccaagcatgg gcgtgatcct gtactgcaat tttttaccac cggtgaaatt
      481 gtagcctcca aacaatgaaa aggtattcag gtcttcgtaa ttgtaacgac tcaccaggtg
      541 cagcttgccc ttgtcggcaa ccacaatagg catcaggaaa acatcctcag gaaaaagaat
      601 aatacccaat gatgcattca cactccacga tttggcatca gcagaatcgc tggtttgcgc
      661 cttgccgtac gacaaagaca ttaatgcaac taccatcaaa caagccatgc gtttcatatc
      721 atgtgcttta agtgaaattg aaagaaatca tcctcccagc gccatagtca tcaccacgag
      781 taccgctccc accactgcca ctactatgcc cagaaaccat ggactgtatc ctgttcgctt
      841 tcccagcatg aagccggtga gaaaaagcag cagcaacgcg ataccattgg aagtgcgcat
      901 ggctacaacc gcatcatcaa taagcaaaaa aggaatagta cttggaaagg tggacaacac
      961 tacgagaaaa aagatctgga tggccgctcg tatgtcatgc cacaaaatgg gaatatgatg
     1021 gtgtggttca ggcaattgtt tcaactcctg ccggatatct tcaaactgtg gcgctttcat
     1081 cacagcgccc accacgggtg gaaaatagtc tttgagcact tcggtagcct ccgctgtatt
     1141 tcccgactgc tgcactttgc gcaatgcggc cgcagcgtct ccacgctcca tcaacaggct
     1201 catgatgtac ataaaagcat ccactatgcc ccatgccaca ttgcagccca gcgctgccca
     1261 gagtatggta cgaatttcct gccggccggc agtggctgca ctgatagaac ctgtgaaggt
     1321 gagcaccatg atcaatccaa agatcacttc actcaatcgg ctgatgggat cgagcaccgg
     1381 ccctggccgg tatataatgc gtttccagaa agtgtccaca gccataacaa tgcaacttat
     1441 tttgaaatgt caggaacaaa atagaataac agggcaatga gcaggtagag cgttaccagt
     1501 tgtatgccct tgtaccaatt cgatttacca tcacctgcaa tcacggttgt caacaatacc
     1561 gccatcagca ccgcaaccac ttctgcccgg ttgaagctaa gtaccagggg ctgcgggcca
     1621 agaacaaaac tcatgagcac cagcagtgga gccacgaaca gtgcgatttg aatagaactg
     1681 cccagggcta tactcatggt caggtccagt ttgtttttgg aagccatggt gatggccgaa
     1741 atgctttccg ccgcaccgcc tatcactgca acaaatacga taccaataaa ggctgtactc
     1801 atgcccagcg ccttgcctgt accttctgca gcgcccacca aaatctcact cataaaagca
     1861 gctcctaccg aagcagccac cagcatcgat acggccagct tcacgctcca gggcttggcg
     1921 tgctcttctc ctgctccctc accggtatcc acactcttga aataatcagg gtgtgttttg
     1981 atcatgaaaa aaaggtaaag cacatacgcc agcagcagga aaacggccag caggacgttg
     2041 aggttcattt cctgttgacg gtacgcttcg ttggtcccca aaaacctgtt gaagccgctg
     2101 ggaatgatca tgctgaacac ggcaataaac atcatggaag aatatacccg gatggtgacc
     2161 ggattgtatt cctgcgtatg gtgtttcata ccccccaata gaaatgaaat gccaatagcc
     2221 atcagcaggt tggccaatat ggcaccaata atggaggcca ggaccatatc atacaaacct
     2281 gcatgcaacg caatcaaacc aatgataagt tcggtggcat tgccaaaggt ggcattcagc
     2341 aaacccccaa tggcatcgcc cgtatagtgc gccaggtttt ctgtggattc tccgatgagc
     2401 ttggctattg gaatgatagc catggcagag cagaaaaata tggtcgtatc tccggcacct
     2461 gtttgctcca gcaaaagtgt gatgggtatg aaaacaaaca gccagaagat ggagggcttg
     2521 agcagttttt tcatcgaaaa aattatttat gatgacatga taaaatgtca ttcggttttt
     2581 tctgcagcca actcactcac tgtttccttt ttgaaagtaa accatgactg aaacaatgca
     2641 taggccaccg aaagaatgat ggcgcctttg aacatgcctg taaagcccca ctgcgacatg
     2701 cctcctatga caccgaggaa caaaacgaga atgggcagct tgccgctctt gccaatcagg
     2761 attggcttta ccacattatc gatcacaa
//
LOCUS       DATIQF010000571         2430 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_24571, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000571 DATIQF010000000
VERSION     DATIQF010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2430
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24571"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..448
                     /locus_tag="VLL95_09530"
     CDS             <1..448
                     /locus_tag="VLL95_09530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39140.1"
                     /translation="VQGVLALADQTDENMGGFQCIPELFRTYDTWKLTQPADRDHFKP
                     DTTGFELVKVKMEAGDLLIFNSLQPNGIRPNLSGDKVRIAQYISMMPAEEDNEPLRQW
                     RIRSWQERIAPEGYAFPGDPRNWEQTKYERATLSELGKKLLGLDKW"
     gene            complement(881..2143)
                     /locus_tag="VLL95_09535"
     CDS             complement(881..2143)
                     /locus_tag="VLL95_09535"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HSR39141.1"
                     /translation="MQALKSLVSTLVLLWFFSMASKAQYTLQGTVRTADGKPVPNASV
                     FFSNTSFGTAANAEGHFALYNIPTGRYELVVSSMGFETRAMVISTEQFAAPLVITLQP
                     KAAELDEVVIESYDKETWEKWGKFFIENFMGTTPEAMQCTLKNTKAIRFRHYKKRQKL
                     VAIADEPLLIENRALGYRISYQMELFEYDFKNKIVYYAGYPLFSSLEKPGKQPREKWL
                     ANRNKSYYGSKMHFMRSLYRNTLAEEGFEMHHMQEVPNAEKERVRQLYKPNTSTAGPG
                     IVISMSGNQAQVGPRSNGDSAAYYRSVMRQPDMLTLVDSARLTGDSIAYAVDETTAAM
                     YFPHQLLVKYLRGAEDALYLQQTLQNREAGPPVSHLRLVHDKPIEVLANGAYFEPLDL
                     LAGGYWSWSDKMGNMLPFDFKPTAPPKR"
BASE COUNT          552 a          700 c          625 g          553 t
ORIGIN      
        1 cgtacagggg gtgcttgccc tcgccgacca aaccgatgaa aacatgggcg gttttcaatg
       61 cattcccgaa ctgtttcgca cctacgatac ctggaaactg acccaacccg cagaccgcga
      121 ccattttaaa cccgacacca ccggttttga gctggtaaaa gtaaaaatgg aagccggcga
      181 cctgcttatt ttcaacagcc tgcaacccaa tggcatacgc cccaacctga gcggcgacaa
      241 ggtgcgcatc gcccaataca tttccatgat gcccgccgaa gaagacaacg aaccactgcg
      301 ccagtggcgc atccgctcct ggcaagagcg catcgccccc gaaggctatg ccttccccgg
      361 cgatccacga aactgggaac aaaccaaata cgaaagggcc acgctaagtg agttgggtaa
      421 aaaactgctg gggctggaca aatggtgaca accgttccaa ccgtgcttca gcaacactgc
      481 acacggcgtt aacctggtgg tttttcttat ccgcgaaaat ctgcgccaac atctgcgtga
      541 tcagcgggaa aaaatctccc gcagaatacg cagatcagat accgcagatg acgcagcaat
      601 cacattcatt ctgtcgctac atgccaggtg ccggcaggta ggtgctcatc cgccataagg
      661 cacacaggtg acacgaactg ttggtgagaa caccaacagc ggcggtaatg acaggtatca
      721 acccaacctc cccctttctt atttcttatt tgttgttcct tatttcttat tcaatcactt
      781 cgtaccagcc gtgtcgctga cccgcaggac acatcgaaat cctgtcggat atttttatcc
      841 gcgaaaatct gcggtatcta cggaaaaaaa atctcccacc tcagcgcttc ggcggagccg
      901 tgggtttgaa atcgaaggga agcatgttac ccattttatc actccagctc cagtagccac
      961 cggccaggag gtcgagcggt tcaaaatatg ccccattggc cagtacctct atgggtttgt
     1021 catgcaccag ccgcaaatgg ctcaccgggg gacctgcttc cctgttctgc agggtttgct
     1081 gcaggtaaag ggcgtcttcc gcaccccgca ggtatttcac cagcagctgg tgggggaaat
     1141 acatggccgc cgtggtttca tcaacggcat aggcaatgct gtcgccggtg aggcgggcac
     1201 tgtccacaag ggtgagcata tccggctggc gcatcacgct gcggtaatag gcggcagagt
     1261 cgccgttcga acggggcccc acctgggctt ggttgccgct catgctgatc acgatacccg
     1321 ggccggcggt gctggtattg ggtttataca actggcgcac cctttccttc tccgcattgg
     1381 gcacctcctg catgtgatgc atctcgaagc cttcctctgc cagcgtattg cggtacaggc
     1441 tgcgcatgaa gtgcatcttg gagccatagt aagatttgtt ccggttggcc agccattttt
     1501 ccctgggctg cttccccggt ttttccaggg agctgaaaag ggggtaaccg gcataataca
     1561 cgatcttgtt tttgaaatcg tattcaaaca attccatctg gtagctgata cggtaaccca
     1621 gcgcccggtt ttcgatcagg agcggttcgt cggcaatggc caccagtttc tgtcgctttt
     1681 tgtaatggcg gaagcggatg gctttggtat tcttcagcgt gcactgcatg gcttcggggg
     1741 tggtgcccat aaagttttcg ataaagaatt tgccccactt ctcccaggtc tccttgtcgt
     1801 agctttctat taccacttca tccagttcgg ccgccttggg ctgcagcgta atgaccaggg
     1861 gcgccgcgaa ctgctcagtg gaaatgacca tcgcccgggt ttcgaaaccc atgctcgaca
     1921 ccaccagttc gtagcggccg gtgggaatat tgtacagcgc aaaatgcccc tcagcattgg
     1981 ccgcggtgcc aaagctggta ttgctgaaaa acacgctggc gttgggcacc ggcttgccat
     2041 cggcagtacg caccgtgccc tgcagggtgt attgcgcctt cgaggccatc gaaaaaaacc
     2101 acaacagcac cagcgttgat accagggact ttaatgcttg cattacggta ggggttcagc
     2161 tttggggcca atgttaagtg aacttagccc gccggccaac aagccgcccc ccaattgtta
     2221 ggaacggtac aaaatcgatg ttgctttctt gtcccggccg tgtctctgca ttacaggaca
     2281 cggcgaagta ctgacgacgt tttcttatcc gcgtaaaaat atctgcggga tctgcagcaa
     2341 acatccccgc attatacagc gctccctaca acatcctcat cctccggggt agtttcagct
     2401 gcccacttca ccgggcccag aggcaacagt
//
LOCUS       DATIQF010000572         4272 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_191629,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000572 DATIQF010000000
VERSION     DATIQF010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4272
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191629"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(192..1211)
                     /gene="tsaD"
                     /locus_tag="VLL95_09540"
     CDS             complement(192..1211)
                     /gene="tsaD"
                     /locus_tag="VLL95_09540"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR03723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HSR39142.1"
                     /translation="MSNSQPSHCIVLAIESSCDETSASICRDGRILSNIIASQSVHEQ
                     YGGVVPELASRAHMQNILPVVHQALQQAGITLAEIDAIAFTQAPGLIGALLVGTSFAK
                     SLALTLNKPLIAVHHMQAHVLANLITEPRPAFPFLCLTVSGGHTQIVVCRSPYDMEVI
                     GETIDDAAGEAFDKSAKLLGLPYPGGPLIDKYARQGQPIFKFAEPQIPELNFSFSGLK
                     TSILYFLQAEQKKDPDFAEKNMADLCASIQHTIINILIKKLMKASKATGIKEICLAGG
                     VSANSGLRQALQQTGMQKGWNVYLPPFEYCTDNAGMIAITGYYKYLASAFTSLDASPS
                     ARAEW"
     gene            complement(1360..1929)
                     /locus_tag="VLL95_09545"
     CDS             complement(1360..1929)
                     /locus_tag="VLL95_09545"
                     /inference="COORDINATES: protein motif:HMM:NF018446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005267 - potassium channel activity
                     [Evidence IEA];
                     GO_function: GO:0015252 - proton channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HSR39143.1"
                     /translation="MTTSRLEAFSDGVLAIIITIMVLELKAPLGNRFEDLTPLVPKLL
                     SYVFSFIYVGIYWNNHHHLFQIMSTVSGKVLLSNLHLLFWLSLIPFATAWMGETNFAQ
                     DTVTIYCSILLLCAIAFSILGKMSIASEGKDSPIAKAIGNGRKETFSILLYGDSVLLS
                     FFLPIVELILVYIVAIIWLVPDSRIEKLT"
     gene            complement(1926..2150)
                     /locus_tag="VLL95_09550"
     CDS             complement(1926..2150)
                     /locus_tag="VLL95_09550"
                     /inference="COORDINATES: protein motif:HMM:NF018595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(4Fe-4S)-binding protein"
                     /protein_id="HSR39144.1"
                     /translation="MEKIIKYTNGEITILWQPDKCIHSGVCVKTLPQVYHPKEKPWIK
                     MENASSEELINQVAKCPSGALSIKKDGDEK"
     gene            complement(2375..3619)
                     /locus_tag="VLL95_09555"
     CDS             complement(2375..3619)
                     /locus_tag="VLL95_09555"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR39145.1"
                     /translation="MRKLLNIVFNSLKMAWEELRTNKMRTFLSLFGVTIGIFCIIGVL
                     ATVQSLKSNIKDGLKDLGTNTVYVQKWPWGGGGEYPWWKYMKRPEPKYEEMRPIKTRS
                     QYADAVAFMLFNSSNVEFNDNLITNVTWYGATDEFNLIQEVKIGEGRYINSSEFANGS
                     PVIVMGYENAVKLFDVPQRAVGKQVVIAGRTATIVGVMKKAGQSLVGGWDFDNIIIVP
                     FNFCRQVVNERNAGRFLLVKGKEGVSVDDLKDELKGIMRSVRKLRPTEDDNFALNDVT
                     ASSQSLDGLFQSLNIGGLVIGGFSLIVGLFGIANIMFVTVKERTGQIGLKKAVGAQKS
                     YIMTEFLLESSFLCILGGLIGLLLVFGITMALSAVLPFKVFLSPGIIALALGISIGVG
                     LLAGIIPAWNAAKLDPVVAIRK"
     gene            complement(3748..>4272)
                     /locus_tag="VLL95_09560"
     CDS             complement(3748..>4272)
                     /locus_tag="VLL95_09560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39146.1"
                     /translation="ASERIFKPFKVDVSAGFALPLSGGNGAKGGLLFAIEPKYAVVEK
                     LAVGIRFEGAIMARAVVDNGMEVIGEAQANGSYLLTGDYYFNNNNFRPFLGGGVGLFK
                     VAGAAVNSNDPLQEEDVYTENNFGGMIRGGFEAGHFRFGIEYNIAGKTSFSPNNDYLG
                     FKLGVCLGGGRSKR"
BASE COUNT         1078 a         1043 c         1030 g         1121 t
ORIGIN      
        1 gctggtagca gaattagtcg ccattttaga ggctacccag gcaccaaaca ggcaggcatc
       61 ggtggtcacc ttcatggcac accggtcgtg gtgaaccgtg aattgcttga accgaaacca
      121 tggattggcc ataacagaag gagaagtttt tgcttaccag cgtaaagttc tgagagttac
      181 catttcaatt tttaccattc ggctcttgca ctgggactgg catcgaggct ggtaaatgct
      241 gaggccaggt acttgtaata cccggtaatg gcgatcatgc cggcgttgtc ggtgcaatat
      301 tcaaaaggcg ggaggtaaac gttccatcct ttttgcattc ctgtttgctg caacgcctgc
      361 cgcaggccac tgttggcact cacaccaccg gccaggcaaa tttctttgat gccagtggct
      421 tttgatgcct tcatcagttt tttgatgaga atattgatga tggtatgctg gatagaggca
      481 cacagatcgg ccatgttctt ttcggcaaaa tcaggatcct ttttttgttc tgcctgcagg
      541 aaataaagaa tagaggtttt caaacctgag aagctgaaat tgagttcagg gatttggggt
      601 tccgcaaatt tgaaaatggg ttgtccctgc cgggcgtatt tgtctatcag cggtccgccg
      661 ggatagggca gccccagtag ctttgcactt ttatcaaatg cttcaccggc ggcatcgtca
      721 atggtttcgc caatcacctc catatcgtat gggctgcggc acaccactat ctgcgtgtgc
      781 cccccgctta ccgtaaggca caaaaaggga aaggctggcc tgggttctgt aatcaggttg
      841 gccaatacat gcgcctgcat gtgatggact gcgatcagtg gtttgttcaa ggtaagggcc
      901 aggcttttgg cgaaactggt gcccaccagc aaagcgccaa taaggcccgg ggcttgtgta
      961 aatgcgatag cgtctatttc ggccagcgtg atgccggcct gttgcaaagc ctggtgcact
     1021 accggcagga tgttttgcat gtgtgccctg ctggccagtt cgggtaccac gccgccatat
     1081 tgttcatgca ccgattgcga agcaatgatg ttcgacaata tcctgccgtc gcggcatatg
     1141 gatgccgagg tttcatcgca ggatgattcg atggcgagaa caatgcaatg cgaaggctgg
     1201 ctattggaca atggaagaat tttgctgcaa ttgaaggcaa aagtaggctt cccggccttt
     1261 taaaaaatgc aacaaccttt agttgcttta gcctgaaggg ttggatttat ttaattccca
     1321 acacgatgcc gggccctgct ttaatacgca atgcatctgt caggttaatt tttcaatgcg
     1381 gctgtccgga accagccaaa taatagctac aatgtaaacc aaaattagct ccactatcgg
     1441 cagaaagaat gatagcagta cactgtctcc atacaacaaa atggaaaaag tttcttttcg
     1501 accattgcca attgccttag caattggtga gtcctttccc tcggaggcaa ttgacatttt
     1561 tcccaaaatg gaaaaggcaa tggcacagag aagtaaaatg ctgcaataaa tggtaacggt
     1621 atcttgagca aagttggttt cacccatcca tgcggtagca aaaggaatga gcgaaagcca
     1681 aaataacaaa tgcaaattcg acagcaaaac cttgccgcta accgtgctca ttatttggaa
     1741 aaggtggtgg tggttgttcc agtaaatgcc aacataaatg aaactgaaca cataggacaa
     1801 aagctttggg acaagcggtg tcaagtcctc aaacctgttg cccaaggggg cttttaattc
     1861 cagcaccata atggtgatga tgatggccaa tacgccatcg ctaaaggctt ccagccggct
     1921 ggttgtcatt tttcgtcccc gtctttttta atgctcaatg ctccggaagg gcacttggca
     1981 acctggttga tcaattcctc actcgacgca ttctccatct tgatccaggg tttttctttg
     2041 ggatggtaca cttgtggaag tgtttttaca caaacccccg aatgaatgca tttatcgggt
     2101 tgccacaaaa tggtgatctc tccgttggta tactttatga tcttttccat agtcgatgct
     2161 tttgcaggtg agtttaaatt gattacaata tacaatcttt gagatgcagt tattgcccct
     2221 ctgttccgtt gtattcataa ccgcattgga ctacctgttt gcaggctgcc tgctcctcag
     2281 gaaaaactgg agtgatttcc cggaaagtaa actcggatgt aattcgaacc aaaaacaccg
     2341 ggttgcggcg tttggaataa gaatgtctgt taacctattt cctgatggct acaacagggt
     2401 caagcttggc ggcattccag gctggtatga tacctgccaa taagcccaca ccaatgctga
     2461 tgcccaaggc cagcgcaatg atgcctggcg acaagaatac tttgaagggc agaacagcac
     2521 tcagggccat ggtgatgccg aacacaagga gcagacctat gaggccaccc aggatgcaga
     2581 ggaaggatga ttcgagcagg aactcggtca tgatgtagga tttttgggca cccactgctt
     2641 ttttcaaacc aatttgacca gttcgttctt tcactgttac gaacatgatg ttggcgatgc
     2701 caaacaaccc aacgatcagg ctgaaaccgc cgatcaccag gccgccgata ttaaggctct
     2761 ggaaaaggcc atcgaggctt tggctgctgg cggtaacatc gttaagggca aaattgtcgt
     2821 cttccgtggg gcgcagtttg cgaacactgc gcatgatgcc tttgagctca tccttcaaat
     2881 cgtcgaccga taccccttct ttgcctttta ccaacaaaaa gcgcccggca tttctttcat
     2941 ttaccacctg ccggcaaaag ttgaaaggca cgatgatgat gttgtcgaaa tcccagccac
     3001 ccaccaggct ctggccggct ttcttcatca cgcctacaat ggtggcggtg cggccagcaa
     3061 tcaccacctg tttgcctact gcccgctggg gtacatcaaa caactttacc gcattttcat
     3121 accccatcac gatcaccggg gagccattgg caaactcgct gctgttgatg tagcggccct
     3181 cgccaatttt tacttcctgt atcaggttga actcatcggt ggcgccgtac caggttacat
     3241 tggtaatgag gttgtcgttg aactctacat tagaactgtt gaacaacata aaggcgactg
     3301 catcggcata ctggctgcgc gtttttatcg ggcgcatttc ctcgtacttg ggttccggcc
     3361 ttttcatgta tttccaccag gggtattcac ctccgccgcc ccagggccac ttctgcacat
     3421 aaacagtgtt cgtgcccagg tctttcaagc catctttgat gtttgatttc aggctttgta
     3481 cagtggccag cactccaatg atgcaaaaaa tgccgatggt gacaccaaac agcgacagga
     3541 aggttcgcat cttattggtg cggagttcct cccatgccat tttcaggcta ttgaatacaa
     3601 tgttgagcag tttgcgcata ggtcaaaatt atgccgcaat caattttgca ggcattcatt
     3661 aaatatgaac ggttggtgaa gccagatggg tgggtaaaaa aatacaccgg gagtgtgtcg
     3721 gtgtattttg aaaaaatgct tcgttcatta tcgcttggat cggcctcctc ccaaacaaac
     3781 ccccaactta aagccgaggt agtcattgtt agggctgaag ctcgttttgc cggcaatatt
     3841 gtactcaatt ccgaaccgaa agtgaccggc ttcaaacccg ccgcgtatca tgccgccaaa
     3901 gttattttcg gtgtatacat cttcttcctg caaaggatcg ttggagttta cggcagcccc
     3961 ggctacttta aacaagccta caccaccacc caggaagggc cggaagttat tgttgttgaa
     4021 ataataatcg ccagtaagca ggtaagatcc gttggcctgt gcttcgccaa tcacttccat
     4081 gccattgtca actactgccc gggccattat ggcaccttcg aatcgaatac caactgcaag
     4141 tttttcgacc actgcatatt tgggttcaat ggcaaaaagc aaaccgcctt tggcgccatt
     4201 gccgccactg agaggcaacg cgaatcctgc gcttacgtcc actttaaaag gcttgaaaat
     4261 ccgctccgat gc
//
LOCUS       DATIQF010000573         8562 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_298145,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000573 DATIQF010000000
VERSION     DATIQF010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8562
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298145"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(90..359)
                     /gene="rpsN"
                     /locus_tag="VLL95_09565"
     CDS             complement(90..359)
                     /gene="rpsN"
                     /locus_tag="VLL95_09565"
                     /inference="COORDINATES: protein motif:HMM:NF006477.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HSR39147.1"
                     /translation="MAKESVKARQRKREAMVAKFAEKRAALKAAGDYAALDQLPRNAS
                     PVRLKNRCQLTGRPKGYMRHFGLCRNMFRDMALEGKIPGVKKASW"
     gene            complement(446..1021)
                     /gene="rplE"
                     /locus_tag="VLL95_09570"
     CDS             complement(446..1021)
                     /gene="rplE"
                     /locus_tag="VLL95_09570"
                     /inference="COORDINATES: protein motif:HMM:NF000585.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HSR39148.1"
                     /translation="MATTNYTPRLAEKYKKEVVPALMKKFGYKTIMQAPKLTKICLNR
                     GVNGAVADKKLVDIAVEELSTITGQKAVPTMSKKDISNFKLRRNMPIGARVTLRGEHM
                     YEFLDRLIAVSLPRVRDFKGINDKSFDGRGNYTMGVTEQIIFPEIDIDKVNKITGLDI
                     TFVTTANTNEEAYELLKEMGLPFKNIKKDNN"
     gene            complement(1021..1359)
                     /gene="rplX"
                     /locus_tag="VLL95_09575"
     CDS             complement(1021..1359)
                     /gene="rplX"
                     /locus_tag="VLL95_09575"
                     /inference="COORDINATES: protein motif:HMM:TIGR01079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HSR39149.1"
                     /translation="MSNRFKPKFNIKKGDNVVVIAGDDKDLKKPRTVLAVYPDKAKVL
                     VEGVNIQTRHTKPSAQNTQGGIVKKEAPIAISNVQLWDAKAGAAARVKRSRDNGKLVR
                     ISKKSGEVIK"
     gene            complement(1443..1811)
                     /gene="rplN"
                     /locus_tag="VLL95_09580"
     CDS             complement(1443..1811)
                     /gene="rplN"
                     /locus_tag="VLL95_09580"
                     /inference="COORDINATES: protein motif:HMM:TIGR01067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HSR39150.1"
                     /translation="MIQQESRLNVADNSGAKEVLCIRVLGNSGQDYAKIGDKIVVTVK
                     DAIPGGGMKKGTVTKAVIVRTKNKLRRKDGSYIRFDDNAVVLLNNADEPRGTRIFGPV
                     ARELRDKGYMKIVSLAPEVL"
     gene            complement(1929..2186)
                     /gene="rpsQ"
                     /locus_tag="VLL95_09585"
     CDS             complement(1929..2186)
                     /gene="rpsQ"
                     /locus_tag="VLL95_09585"
                     /inference="COORDINATES: protein motif:HMM:TIGR03635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HSR39151.1"
                     /translation="MESRNLRKTRIGVVASNKMDKTITVAVERKVKHPIYGKFVKKTT
                     KFHAHDEKNECSIGDTVKIMETRPLSKTKRWRLVEVVEKVK"
     gene            complement(2227..2436)
                     /gene="rpmC"
                     /locus_tag="VLL95_09590"
     CDS             complement(2227..2436)
                     /gene="rpmC"
                     /locus_tag="VLL95_09590"
                     /inference="COORDINATES: protein motif:HMM:NF013027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HSR39152.1"
                     /translation="MSKKIDFNISLRELSIEDLKARINEDEVRLKKLEFAHAITPLEN
                     PMSIRALRRDIARMKSELNKRALVG"
     gene            complement(2550..2969)
                     /gene="rplP"
                     /locus_tag="VLL95_09595"
     CDS             complement(2550..2969)
                     /gene="rplP"
                     /locus_tag="VLL95_09595"
                     /inference="COORDINATES: protein motif:HMM:NF012476.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HSR39153.1"
                     /translation="MLQPKRTKFRKQQKGRIREVAKRGATISFGSYALKAMEPIWLNN
                     RQIESARQAMTRAMKREGSVWIRVFPDKVITRKPLEVRMGKGKGNPEFWAAVVEPGRI
                     LFECDGVPADVARHAMELAAQKLPIKTKFIVRRDLQA"
     gene            complement(3078..3860)
                     /gene="rpsC"
                     /locus_tag="VLL95_09600"
     CDS             complement(3078..3860)
                     /gene="rpsC"
                     /locus_tag="VLL95_09600"
                     /inference="COORDINATES: protein motif:HMM:TIGR01009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HSR39154.1"
                     /translation="MGQKANPIGNRLGIIRGWDSNWYGNKKVYADRLIEDNKIRTYLN
                     ARINKGGISKIVIERTLNKLIVTIHTSKPGIIIGKGGNEVDRIKEELKKLTGKEDVQI
                     NILEIRRPEVDAMIVADTIARQIENRINYKRAIKMAIASAMRMGAEGIKVKASGRLGG
                     AEIARSEEIKMGRTPLHTYRMDIDYANVAAQTVYGKIGIKVWICKGEVLTKRDLNPNF
                     VGTGSGLSDRRGGEDRGDRGGRGDRRGGGERRDRGGDRGGRR"
     gene            complement(3944..4282)
                     /gene="rplV"
                     /locus_tag="VLL95_09605"
     CDS             complement(3944..4282)
                     /gene="rplV"
                     /locus_tag="VLL95_09605"
                     /inference="COORDINATES: protein motif:HMM:TIGR01044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HSR39155.1"
                     /translation="MEAVAKLRNYPTSPRKMRLLADLIRGMQVDKALAVLEHNTKHSS
                     VPLAKLVKSAAFNWKAKNEGADESSLVVKTVMVDGGRTLKRMRPAPQGRGYRVRKRSN
                     HVTVIVDTKL"
     gene            complement(4375..4644)
                     /gene="rpsS"
                     /locus_tag="VLL95_09610"
     CDS             complement(4375..4644)
                     /gene="rpsS"
                     /locus_tag="VLL95_09610"
                     /inference="COORDINATES: protein motif:HMM:TIGR01050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HSR39156.1"
                     /translation="MARSIKKGPYVDAKLEKKIVNMAEGKLKKGVIKTWSRRSTITPD
                     FVGQTFAVHNGNKFIPVYVTEFMVGHKLGEFAPTRNFKGHAGSKK"
     gene            complement(4729..5568)
                     /gene="rplB"
                     /locus_tag="VLL95_09615"
     CDS             complement(4729..5568)
                     /gene="rplB"
                     /locus_tag="VLL95_09615"
                     /inference="COORDINATES: protein motif:HMM:TIGR01171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HSR39157.1"
                     /translation="MALKKFKPMTAGTRWKIGNAYAELTTDTPEKSLLEPIKGTGGRN
                     AQGRRTMRYIGGGHKKKYRIIDFKRNKHDVEATVLTVEYDPNRSAFISLVEYTDGEKR
                     YILAPQGIQVGQKIVAGVNVAPELGNCLPMKNMPLGTNIHNIEMQPGQGGKLVRSAGA
                     AAQLANKEETYAVLKMPSGELRKVLINCFATVGVVSNGDHNLQSLGKAGANRWRGIRP
                     RNRGVAMNPVDHPMGGGEGRASGGHPRSRTGKYAKGEKTRTKGKGSDKLIIQRRDGSK
                     LAK"
     gene            complement(5636..5935)
                     /gene="rplW"
                     /locus_tag="VLL95_09620"
     CDS             complement(5636..5935)
                     /gene="rplW"
                     /locus_tag="VLL95_09620"
                     /inference="COORDINATES: protein motif:HMM:NF004363.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HSR39158.1"
                     /translation="MKLNDVLIKPVLTEKVNKQIEKKRSYTFIVDRKANKLEIKKAIE
                     EFYGVTVTDVNTLVMPGKAKARFTKSGFITGRKPAKKKAVVTVAEGEEINLYGEI"
     gene            complement(5963..6598)
                     /gene="rplD"
                     /locus_tag="VLL95_09625"
     CDS             complement(5963..6598)
                     /gene="rplD"
                     /locus_tag="VLL95_09625"
                     /inference="COORDINATES: protein motif:HMM:NF012782.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HSR39159.1"
                     /translation="MTIEVLNTAGQKTGRTIELPEDIFGVEPNDHVIYLAVKQYLAAQ
                     RQGTHKVKTRMEVKGASRKLHKQKGTGGSRKGNIRNPLYKGGGTIFGPKPHGYDHKLN
                     RKVKDLAKIGALSYKAKENAILIVEDIKMDAPKTKQFNGVMESLGVASKKALFVYPET
                     DINLYLSLRNIPNADAMELADINTYDIMNAEVMVLTESAAKIFTEIEGSEA"
     gene            complement(6641..7258)
                     /gene="rplC"
                     /locus_tag="VLL95_09630"
     CDS             complement(6641..7258)
                     /gene="rplC"
                     /locus_tag="VLL95_09630"
                     /inference="COORDINATES: protein motif:HMM:TIGR03625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HSR39160.1"
                     /translation="MKGIIGKKIGMTSVFDPNGKQIACTIVEAGPCVVSQVKTVESDG
                     YNALQLAFGEKKEKNATKAEKNHFAKAQSAPKSFVKEFRDFSLEKALGETVTVDIFAE
                     GDQVDVVGTTKGKGFQGVVKRHGFSGVGEQSHGQHDRQRAPGSIGNSSDASRVFKGMR
                     MAGRMGGDRVKMKGLKVVKIFPEKNYILISGSVPGHNGSIVLIQK"
     gene            complement(7535..7840)
                     /gene="rpsJ"
                     /locus_tag="VLL95_09635"
     CDS             complement(7535..7840)
                     /gene="rpsJ"
                     /locus_tag="VLL95_09635"
                     /inference="COORDINATES: protein motif:HMM:NF001861.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HSR39161.1"
                     /translation="MSQRIRIKLQSYDHNLVDKSAEKIVKTVRGTGAVVTGPIPLPTQ
                     KKIFTVLRSPHVNKKAREQFQLNTHKRLLDIYTSSSRTVDALSKLDLPSGVEVEIKA"
     gene            8086..>8562
                     /locus_tag="VLL95_09640"
     CDS             8086..>8562
                     /locus_tag="VLL95_09640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39162.1"
                     /translation="MRNSLLISACLFLLPAAYSQSTNKKVIRTSQQSHSSGGKSEAKE
                     LPFRSDQMKGLQWRNLGPTRGGRSVASSGVVGQPFTYYMGSTGGGVWKTEDGGITWNN
                     ISDGFFKTGSIGAIAVAESDPNVIYVGTGEHAVRGVMTSAGDGVYKSTDAGKTWKPI"
BASE COUNT         1924 a         2145 c         1990 g         2503 t
ORIGIN      
        1 catatttttt ccctcctaca ccacgccgga gcgtgataat tggatttaag ttttaatgat
       61 tagaatttgt tgaagcgctg atgatatgat taccagctgg ctttctttac tcctgggatc
      121 tttccttcca gggccatgtc gcggaacatg ttacggcaga ggccgaaatg acgcatatac
      181 cctttgggac gaccggtaag ctgacagcgg ttcttgaggc gcacaggaga tgcattgcgg
      241 ggaagctgat ccaaagcggc ataatcgccg gctgccttga gggcggcacg cttctcagca
      301 aacttggcta ccatggcttc gcgtttgcgc tgacgggctt ttactgattc ttttgccata
      361 agattttaaa ttccaaagtt taaaatgcca gcttccaaat taccgtgtca ggttctccca
      421 acaaggactc ggaaattggg acttattaat tgttgtcttt tttgatgttc ttgaagggca
      481 gacccatttc cttgagcagt tcgtaagcct cttcgttggt gttggcagtg gttacgaaag
      541 tgatgtcgag accagtgatc ttgttcacct tgtcgatatc gatttcaggg aaaatgattt
      601 gctcagttac acccatggta tagttgccac gaccatcgaa gctcttgtcg ttgatgcctt
      661 tgaaatcgcg aacacgagga agcgatacgg caatcagacg atcgaggaat tcgtacatgt
      721 gctcaccacg cagggtaaca cgggcaccga taggcatgtt gcgacgcaac ttgaagttag
      781 agatgtcctt cttcgacatg gtaggtaccg ccttctgacc agtgatggtt gaaagctctt
      841 ctacggcaat gtctaccaac ttcttgtcgg ctacggcacc attcacacca cggttcaagc
      901 agatcttggt cagcttggga gcctgcataa tggttttgta accaaatttc ttcatgaggg
      961 caggtacaac ttctttcttg tacttttctg ccaggcgcgg agtatagttt gttgttgcca
     1021 ttacttgatc acctccccgg attttttaga gatacgaacc agtttaccgt tgtcgcggct
     1081 gcgctttacg cgggcagcag caccggcttt agcatcccac aactgaacat tgctgatagc
     1141 aatgggcgct tctttcttta caataccacc ctgggtgttt tgagcactgg gtttggtatg
     1201 gcgggtctga atgtttacac cttctaccag tactttggcc ttgtcggggt atacggccag
     1261 cacggtacgg ggctttttca gatccttatc atcaccggca atcaccacaa cgttgtcgcc
     1321 tttcttgatg ttgaactttg gtttgaaacg attactcata ctttatagct tgatgcgtaa
     1381 cgcttaacgc ttaacgcagt tattgaaatt cgctttcagc actttgcctt cggcgttttg
     1441 cattacagta cttcaggcgc cagtgataca atcttcatgt atcccttgtc gcggagttcg
     1501 cgggctacag gcccgaaaat gcgggtacca cgaggttcgt cggcgttgtt cagcaatacc
     1561 actgcattgt catcaaaacg gatgtaagaa ccatccttac gacgcaactt gtttttggta
     1621 cgcacaataa ctgcctttgt tacggtacct ttcttcatac caccaccagg gatggcatct
     1681 ttcacggtta ccacaatctt gtcgccaatc ttggcataat cctgtccgct gttgccgagt
     1741 acacggatgc agagcacttc tttggcaccg ctgttatccg ctacattcaa ccggctttct
     1801 tgctgaatca ttgtctttag ctttttagct ttagcacaag gctaatgatg ttactaattt
     1861 tctcagaggc tttcaccatg ctgtacgcac cagtgcaaag cttgaagcat gcgaatgatc
     1921 gctgctgatt acttcacctt ctctactact tccaccaggc gccagcgctt ggtcttgctg
     1981 agcggacggg tttccataat ctttacggtg tcgccaatgc tgcactcatt cttttcgtcg
     2041 tgagcatgga acttggtagt ctttttcacg aacttaccat agatagggtg cttcacttta
     2101 cgttctacag ccacagtaat ggtcttatcc attttgttgc tggctaccac gcctatcctg
     2161 gttttgcgaa gatttctgct ttccatttgg ttcaatattt ttttgaactt tcgattcgtt
     2221 gattaattag cctaccaaag cccttttgtt cagttcgctt ttcatgcggg cgatatcgcg
     2281 acgcagtgca cgaatgctca tggggttttc gagcggcgta atagcatgag caaactcaag
     2341 cttcttcagg cgtacttcgt cttcgttgat acgagccttc agatcttcta tgctgagctc
     2401 acgcaggctg atgttgaaat caattttctt tgacatctct gtattatttg agagtttgaa
     2461 aacttgaaaa tttgaaaatg aaaggccggc tttataatgg cttttctctc attgtgccat
     2521 tttcaaattt tcgctttatc actttgcttt taggcttgca gatcgcgacg aacaatgaac
     2581 ttcgttttga tcggcagttt ttgtgcggcc agttccatgg catggcgggc aacgtcggca
     2641 ggtacaccat cgcactcaaa caggatgcga cctggttcta ccacggcagc ccagaattcg
     2701 gggttacctt tacccttacc catcctcact tccagtggct tgcgggtgat tactttatca
     2761 gggaatacgc ggatccacac gctaccttca cgcttcatgg cacgggtcat tgcctggcgg
     2821 gcactttcaa tctggcgatt gttcaaccaa ataggttcca ttgctttcag ggcgtatgaa
     2881 ccgaaggaaa tggtagcgcc acgctttgcc acttcgcgga tgcggccttt ctgttgctta
     2941 cggaacttgg ttcttttcgg ctgtaacatg acttatagtt aattactcaa ttaaacaatt
     3001 actcaatagc tcaatgacgt tttgctttta caacggtctc aacattgagc aattgagcca
     3061 ttgagttgct gcgctgatta gcgacgacct ccgcggtcac caccacgatc acgacgctca
     3121 ccaccaccgc gacgatcgcc acgaccacca cggtcaccac gatcttcacc accacgacgg
     3181 tcgctcagac cactgccggt gccaacgaag ttggggttca ggtcacgctt ggtcagaact
     3241 tcgcctttgc aaatccaaac cttgataccg attttaccat atacagtctg cgctgctacg
     3301 ttggcgtaat cgatgtccat gcgataagta tgcagaggag tacgacccat tttgatctct
     3361 tcgctacggg caatttcagc accacccaaa cgaccacttg ctttcacctt gatgccttca
     3421 gcacccatgc gcatggcaga ggcgatggcc atcttgatgg cacgcttgta gttgatacgg
     3481 ttttcgatct ggcgggcaat ggtgtcagcc acgatcatgg catccacctc aggacggcgg
     3541 atttccagga tgttgatctg cacatcttcc ttaccagtca gcttcttcag ctcttccttg
     3601 atgcgatcta cttcattacc acccttacca atgatgatac caggcttgga ggtatgaata
     3661 gtaacgatca gcttgttgag ggtacgctcg ataacaattt tggaaatacc acccttgttg
     3721 atacgggcat tgaggtaggt ccggatcttg ttgtcctcga tcaaacggtc ggcatacact
     3781 tttttgttgc cgtaccagtt gctgtcccaa ccacggatga ttccgagcct gttaccgatt
     3841 ggatttgctt tttgacccat gttatttttt tataattcca attttgaaat tccaaattcc
     3901 aaacgcagtg ttatgtgctg tgacctggaa tttgtttgcg ttgttataat ttggtatcca
     3961 caattacagt tacatgattg ctgcgcttgc gcacccggta accacggccc tgcggagcgg
     4021 gacgcatacg cttcagcgta cgaccgccat ccaccatcac ggtttttacc accaggctgc
     4081 tttcgtcagc gccttcattc ttggctttcc agttgaaagc ggcacttttt accagcttag
     4141 ccaaaggaac tgaactgtgc ttggtattgt gttccaatac agccaaggcc ttatctacct
     4201 gcatgccacg gatgagatcg gccagcaaac gcatcttgcg gggcgatgtg ggataatttc
     4261 tcagtttagc tactgcttcc attttctatt cagtttcagg tttctggttt tcagtttttg
     4321 ctgatgaaga agctcatgca acttgccacc aaaaaccacc aacatttaaa caatttattt
     4381 cttgcttcca gcgtgtcctt tgaagttgcg ggtaggagca aattcaccca gcttgtgacc
     4441 taccatgaat tcggttacgt acacaggaat gaacttgttg ccgttgtgca ccgcgaaggt
     4501 ttggcctaca aaatcaggag tgatcgtgga acgacggctc caggttttga taacgccttt
     4561 cttcagtttg ccttctgcca tgttcacgat tttcttctcg agcttggcat caacgtaagg
     4621 acctttttta attgaacgag ccatattata aattccagtt tttaaattcc agattccaat
     4681 gcttgtggta aaggatttgg aacttgatta ttttggattt gctttttctt atttagccag
     4741 tttagaaccg tcgcggcgct ggatgatcag tttgtcgctg cccttgcctt tggtacgggt
     4801 cttctcacct ttagcgtact taccggtacg gctgcggggg tgaccaccag aagcacggcc
     4861 ttcaccacca cccatcgggt gatctacagg gttcatggcc acaccacggt tgcgggggcg
     4921 gataccgcgc caacgattgg caccggcttt acccaggctc tgcaggttat gatcaccatt
     4981 gcttactaca cctacagtgg caaagcagtt gatcaatacc ttacgcagtt cgccagaagg
     5041 cattttcaat acagcgtaag tttcttcctt gttggccagc tgagcagcgg caccggcact
     5101 gcgtaccagt ttgccaccct gaccaggctg catttcaata ttgtggatgt tggtaccgag
     5161 gggcatgttc ttcataggaa gacagttacc caattcaggt gctacgttta caccagctac
     5221 aatcttctga ccaacctgga taccctgggg agccaggatg taacgctttt cgccatcggt
     5281 gtactctacc aatgaaatga aagcactacg gttgggatcg tactcaacag tcaatactgt
     5341 tgcttcaaca tcatgcttgt tgcgcttgaa atcgatgata cgatacttct tcttgtgacc
     5401 accaccaatg tagcgcatgg tacgacgacc ctgtgcgtta cggccaccag tgcccttgat
     5461 aggctccagc aggctctttt caggcgtgtc ggtagtcaac tctgcatatg cattaccaat
     5521 tttccagcgg gtaccggcgg tcattggttt aaacttcttc agtgccattt tttatacttc
     5581 ttgattgttt tgtttcaaca cttcgcggcg gttggttgcc attctgtttt tgcgattaga
     5641 tttcaccgta gaggttgatt tcctcacctt cagccacagt gactactgcc ttcttcttgg
     5701 caggcttgcg gccggtaatg aagccagact tggtgaaacg ggccttggct ttgccaggca
     5761 ttaccaacgt attcacgtca gttacagtta cgccgtagaa ctcttcgatc gcttttttga
     5821 tctccagctt gttggcctta cgatctacga tgaaagtgta gctgcgcttc ttctcgattt
     5881 gcttgttcac cttttcggtg agaacaggct ttattaaaac atcattcagt ttcattgcga
     5941 ttctggatta atcggttgtt aattaagctt cgctaccttc aatttcagtg aagattttag
     6001 cggcagattc tgtaagcacc atcacctcgg cgttcatgat gtcgtaggtg ttgatatcag
     6061 ccagttccat agcgtcagca ttaggaatgt tgcgcaggct caggtacagg ttgatatctg
     6121 tttcaggata cacaaacaag gctttcttgc tggctacacc caggctttcc atcacaccgt
     6181 tgaactgctt ggtcttggga gcatccatct tgatgtcttc aacgatcagg atggcatttt
     6241 ccttggcctt gtagctgagg gcgccgatct tggccagatc cttcaccttg cggttcagct
     6301 tatgatcata accatgaggc ttgggtccga agatggtacc accacccttg tacaatgggt
     6361 tacggatgtt acccttacgg ctgccaccag tacccttttg cttgtgaagt ttgcggctgg
     6421 cgcctttcac ttccatacgg gttttcacct tatgggtgcc ctggcgctgt gcagccaggt
     6481 attgcttcac agcaaggtaa atcacgtgat cattcggctc tacaccgaag atgtcttcgg
     6541 gcagttcaat tgtcctgcct gttttttgtc ctgctgtatt taaaacttcg attgtcataa
     6601 ctttttcgtt tctaaccggc cgggccggca cggtttacaa ttacttctga attaaaacga
     6661 tagaaccatt gtggccggga acagaaccac tgatgaggat gtagttcttt tcggggaaaa
     6721 ttttcaccac tttcagaccc ttcatcttta cgcgatcgcc acccatgcgg cctgccatgc
     6781 gcatgccttt gaatacacgg ctggcatcag aagagttacc gatagaaccg ggggcacgct
     6841 gacggtcgtg ctggccatgc gattgctcgc ccacaccgct aaagccatgg cgctttacaa
     6901 caccctggaa acctttaccc ttggtggtac caactacgtc aacctggtcg ccttcggcga
     6961 aaatgtcaac agtgactgtt tcacccagag ctttctccag tgaaaagtca cgaaattctt
     7021 ttacaaatga tttgggggca gattgtgcct tggcaaagtg attcttttca gccttggtgg
     7081 cattcttttc tttcttttcg ccaaaagcca actgaagtgc attgtaaccg tcagattcaa
     7141 cggtctttac ctgcgaaacc acgcagggac cagcctcaac aatagtacaa gcgatctgct
     7201 tgccgttggg atcgaatacg ctggtcatcc cgattttctt tccaatgatt cctttcattc
     7261 tttatcggtt tgtgcccggc agggttataa ggacatccaa catcgctgcc ggattcaatc
     7321 ccagtttagc taccgacctt ttccgttgtt tccgcatggt gcggagggga agtaccggca
     7381 gtaaacaaac cctgaaaggc ttgttcatat gtaccccact gcttttgcag tgagaattat
     7441 ttaaaaatca gagctctttt ttcgctgccc tttggcagga ttgagaggtg atacatttac
     7501 ttaaaagagc gacggagctg ggctcctgag cctgttaggc tttgatttca acctcaacac
     7561 cactgggaag atccagtttg ctgagcgcat caacggtacg gctgctgctg gtgtagatgt
     7621 ccaacaaacg cttgtgcgta ttcagttgga actgctcacg agctttcttg tttacgtggg
     7681 gtgaacgcag tacagtgaag attttcttct gcgtgggcaa aggaatggga cctgtaacca
     7741 cggcgcctgt tccacgaact gttttcacaa ttttctcggc actcttgtca accaggttgt
     7801 ggtcgtaaga ctgcagtttg atacgtatcc gctgactcat attcaaagac ctttttttcg
     7861 aattgggatg cgaaggtaac gggattcggt aattgggcaa atattttttg aaagtttttt
     7921 agccctaccg gccttttgcc aagggttcaa cctgtttatt agcaaatagt tagtaatcgg
     7981 ccgtgcccgg ccaaatggca aggaaacaaa aatacaaggc agcaggcggc aattcttcaa
     8041 gggggttgcg tacatttcaa atccattcaa aatcagcctt gattcatgcg taattcatta
     8101 ctaatcagcg cctgcctgtt ccttttgccg gcagcttaca gccaatccac caacaagaaa
     8161 gtgataagaa cttcacagca atcccattcc tcaggtggca aatccgaagc gaaagaactg
     8221 cccttccgca gcgaccaaat gaaaggcctg caatggcgca acctcggtcc cacccggggc
     8281 ggacgcagcg tggccagctc cggcgtggtc gggcagccat ttacctatta tatgggttcc
     8341 accggtggcg gggtttggaa aacagaagac ggaggcatta cctggaacaa catttccgac
     8401 ggctttttca agacaggttc cataggcgcc attgccgtgg ctgaaagcga cccgaacgtg
     8461 atttatgtcg ggactggcga gcatgccgtc cgcggggtga tgacctcggc gggcgacggg
     8521 gtgtacaaaa gcacggatgc cggcaaaaca tggaagccta tt
//
LOCUS       DATIQF010000574         2412 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_191762,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000574 DATIQF010000000
VERSION     DATIQF010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2412
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191762"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1159
                     /locus_tag="VLL95_09645"
     CDS             <1..1159
                     /locus_tag="VLL95_09645"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSR39163.1"
                     /translation="TIKGVTNQTEIWPKIIEDIKYAYENLPERQDAVGRINKWVAGAL
                     YGKMLVFTKDFATARTVLTEVVSKGTNAVGTKFGLLDNYDDAFNLVNDNSKESVFAFQ
                     ASSKDNAGAQNSNWGDLLNLPATGPSSAGFYCPTYWFTNHFKTDANGLPVSNPHNTSV
                     LDPAGQAGYSQYNGNVDVRLDWTIGRNQVPYLDWGTYLTSWQRDVSAGPFGAKKTCIR
                     QSQVGDTHDASIWHVSGGVALNLNLMRFAEVILLLAEAEIESGSLQNAFSLINQVRAR
                     AANSRTVTFAAAYGTPKTAPYTSVFANKDEATRALRMERQLELGMEGHRFFDLVRWGA
                     AQTELNAYFNYESAFPYQVLLKPKPTWDAARNSYYPIPQQQIDLSNGFIKP"
     gene            1375..>2412
                     /locus_tag="VLL95_09650"
     CDS             1375..>2412
                     /locus_tag="VLL95_09650"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HSR39164.1"
                     /translation="MACSKPSGTFVLLDNDDTNIHFVNTVQESDSINIFDFENIYNGG
                     GVGVGDFNNDGLQDLYFTGNMTANKLYLNKGDLRFEEVTAAAGVDGGGIWSRGISVID
                     INNDGLMDMYVCATAWKNPESRRNVLYINKGVNKEGVPRFENEAAAYGLDDTTHTTMA
                     YFFDYDRDHDLDVYLGVNHILEHDYPNVYSPRTIDGTHPSTGRLYRNAYDSTLKHPVF
                     TDVSRQAGILYEGYTHAVNIFDANLDGWPDILEANDYISNNVLYINNRDGTFTDHTTD
                     YFKHTALNAMGSDVIDLNNDGLDDLVEVDMAPQDNYRKKMFGPPINYTSYINSLMYGY
                     QYQYIRNMVQAN"
BASE COUNT          638 a          644 c          575 g          555 t
ORIGIN      
        1 caccatcaag ggcgtgacca accaaaccga aatctggccc aaaatcattg aagacatcaa
       61 gtatgcctac gaaaacctcc ctgaaaggca ggacgctgtg ggccgcatca acaaatgggt
      121 agccggcgct ttgtatggca aaatgctggt cttcaccaaa gattttgcaa ccgccagaac
      181 cgttttgact gaggtggtat cgaaaggcac caatgctgta ggtaccaagt ttggcctgct
      241 cgacaattat gacgacgcat tcaacctggt aaatgacaac agtaaggaaa gcgtgtttgc
      301 cttccaggct tcttccaaag acaatgccgg tgcgcagaac agcaactggg gtgatctttt
      361 gaacctgcct gctaccggac ccagcagtgc tggtttctat tgccctacgt attggtttac
      421 caatcatttc aaaaccgatg ccaacgggtt gccagtttcc aacccgcaca atacttctgt
      481 actggatccg gccggtcagg caggatattc ccaatacaat ggcaatgtgg atgtgcgtct
      541 tgactggacc attggccgca accaggtgcc ttatctcgac tggggcacct accttaccag
      601 ctggcagcgt gatgtgagcg ccggaccctt tggcgccaaa aaaacctgta tccgccaatc
      661 acaagtgggc gatacccatg atgccagcat ctggcatgta tcgggtggtg tggccctcaa
      721 cctgaacctg atgcgttttg cagaagtgat cctgcttttg gctgaagctg aaattgaatc
      781 tggcagcctt caaaatgctt ttagcctgat caaccaggta cgtgccaggg cagccaacag
      841 ccgcaccgtg actttcgcag cggcctacgg tacacccaaa acagcgcctt acacttcagt
      901 gtttgccaat aaggacgaag ccaccagggc actccgcatg gagcgtcaac tggaattggg
      961 tatggaagga caccgcttct tcgacctggt tcgctggggt gccgcacaaa ctgagctcaa
     1021 cgcttatttc aactacgaaa gtgctttccc ttaccaggtg ctgctgaagc caaagcccac
     1081 atgggacgct gcccgcaaca gctattatcc cataccgcag caacagattg acctgagcaa
     1141 cggatttatt aaaccataag caagcaaata tgggatttct atcccaaccg tttgaaaggt
     1201 ggagcattca tttgttccgc cttttctttg ctattatatc atgattaatg ccatatttga
     1261 atggccgcga aaactaattt ttatcgcttc tgtacgcaca tgaattttac tgaaaaaaaa
     1321 tgtcgcccaa aactgccggc attctttgta ctcctggcaa cctccgcatt gtggatggcc
     1381 tgcagcaagc cctccggcac ttttgtattg cttgacaacg atgacacgaa tatccacttc
     1441 gtaaacaccg tgcaggaaag tgattcgatc aacattttcg atttcgaaaa catctacaat
     1501 ggcggtggtg tgggcgtggg cgatttcaac aacgatggcc tacaggacct ttatttcaca
     1561 ggcaatatga cggccaacaa actctacctc aacaaaggcg atctccggtt tgaagaggtg
     1621 acagctgcag caggcgtgga tggtggtgga atatggagca ggggtatttc tgtaattgat
     1681 atcaacaacg atggcctgat ggacatgtac gtgtgtgcca ctgcctggaa aaatcctgag
     1741 tcgcggcgca atgttttgta catcaacaaa ggggtgaaca aagagggcgt accgaggttt
     1801 gaaaacgagg cggcagccta tggcctggat gataccacgc acaccaccat ggcttatttc
     1861 tttgattacg accgtgacca tgacctggat gtgtacctgg gcgtgaacca catactggaa
     1921 cacgactatc ccaacgtgta ttcgccccgc accattgacg gcacgcatcc cagcaccggc
     1981 aggctgtacc gcaatgcata cgacagcacg ctgaaacacc cggttttcac agatgtgtcg
     2041 cgccaggctg gcattttgta cgaaggctac acccatgccg tgaatatttt tgacgccaac
     2101 ctggatggct ggcccgatat actggaagcc aacgattaca tcagtaacaa cgtgctgtac
     2161 atcaacaacc gtgacggcac ttttaccgac cataccaccg actacttcaa gcacacggcc
     2221 ctcaatgcca tgggcagcga tgtgattgat ctgaacaacg atggccttga cgacctggtg
     2281 gaagtagaca tggccccaca ggacaactac cgcaaaaaaa tgttcggccc gcctatcaat
     2341 tacacttctt atatcaactc cttgatgtac ggctaccagt accaatacat ccgcaacatg
     2401 gtgcaggcca ac
//
LOCUS       DATIQF010000575         1653 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_9337, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000575 DATIQF010000000
VERSION     DATIQF010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1653
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9337"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..293)
                     /locus_tag="VLL95_09655"
     CDS             complement(<1..293)
                     /locus_tag="VLL95_09655"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSR39165.1"
                     /translation="MKQHLAQIALVVRDYDEAIDFYCNKLHFHLVEDTVMSEVKRWVV
                     VAPPGSNGCKLLLAKAANELQSTRIGNQTGGRVFLFLHTDNLQRDYQNLIQHN"
     gene            complement(314..1168)
                     /locus_tag="VLL95_09660"
     CDS             complement(314..1168)
                     /locus_tag="VLL95_09660"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HSR39166.1"
                     /translation="MYINSFLLPGQPVVSVVAYLHEKPFNMLMPISDDNSDRHLTPFI
                     NYLLIILNVLVFVVLQQSGNNLYFTYSFSTVPAEILTGTDIVTQGRVVIDSYSGQEFE
                     IPGLQITPIPVYFTLLTSMFMHGGWGHLLGNMLYLYIFGDNLENRMGHGRYLAFYLLT
                     GVLASLAHVFSSLMVPGQELIPSLGASGAISGVLGGNLILFPSRKVNALLGWFVVQVP
                     VLVALGLWIVFQVISGLGMLGGGSDGVAYAAHIGGFVAGMLLVKFFDKGLRKPPGRLQ
                     SRRYEYRE"
     gene            1231..>1653
                     /locus_tag="VLL95_09665"
     CDS             1231..>1653
                     /locus_tag="VLL95_09665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39167.1"
                     /translation="MSTTVSKVSLNFENTENAFQYKSDKDLKQAHFLFNSMGFQWLVE
                     LGTRITPWAIRNGLPIKGIIRSTIFKQFVGGETLEETKPVVDLLGQYHVQVILDYGAE
                     GGHNGEPGFDNSMQQFIKVIDYAGVQPNIPFMSVKVTGI"
BASE COUNT          439 a          423 c          410 g          381 t
ORIGIN      
        1 atgttgtgtt gaatcaggtt ctggtaatct ctttgcaggt tatcggtgtg taaaaacaaa
       61 aacaccctgc caccagtctg gttgccgatg cgagtgcttt gcaattcgtt ggccgccttt
      121 gccagcagga gtttgcatcc attgctgccc gggggagcca ccaccaccca gcgcttcacc
      181 tcactcatta ccgtgtcttc aacgaggtgg aaatggagtt tgttgcaata gaaatctatc
      241 gcttcgtcat aatctcttac caccaatgct atttgcgcca aatgctgttt catgctgcta
      301 aaatagggag gccctactcc ctgtattcat atcggcgact ttgcaaacgg cccggtggct
      361 ttcggagtcc cttgtcgaag aatttcacca gcagcatgcc ggccacaaaa ccgccaatat
      421 gcgctgcata ggccacaccg tcgctgccgc cgcccagcat tcccagaccg ctgatgacct
      481 ggaatacgat ccacaatccc aaagcgacca gcacgggcac ctgcaccaca aaccagccaa
      541 ggagggcatt cactttcctg gaagggaaaa ggatgaggtt gccacccaac accccgctga
      601 tggctccgga tgcccccagg ctgggaatca gttcctggcc aggcaccatc aaagaactga
      661 atacatgtgc tagggatgcc aacaccccgg taagcaggta aaatgccagg taacggccgt
      721 gtcccattcg gttttcaagg ttgtcgccaa aaatgtagag gtacagcata ttgcccagca
      781 aatgccccca tccgccatgc atgaacatgc tggtgagcag ggtgaagtat accggaattg
      841 gagtgatctg taacccggga atttcaaatt cctgcccaga gtaagaatca attaccacac
      901 ggccctgtgt aacaatgtct gttccggtca gtatttcggc cggtacggtg gaaaaagaat
      961 aagtgaaata caggttattg cccgattgct gcagtaccac aaaaaccagg acattgagga
     1021 tgatgagcag gtaattgata aacggcgtca ggtggcgatc actgttgtca tcgctgatgg
     1081 gcattagcat gttgaaaggc ttttcatgaa gataagcaac aactgaaacc acaggttggc
     1141 cggggagcag gaaagaattg atatacatca gctttccgat taggtggttt gcactacttt
     1201 gcaggcaaaa tttttgcctg cctgattgtt atgagtacca ctgtatccaa ggtgtcgctc
     1261 aattttgaga acactgaaaa cgccttccag tataaatcgg acaaagacct gaagcaagcc
     1321 catttcctgt tcaacagcat gggatttcaa tggctggtag aactgggcac ccgcattacg
     1381 ccctgggcta tccgcaacgg cctgcccatc aaaggcatta tccgcagcac cattttcaaa
     1441 cagtttgtgg gtggtgaaac actcgaagaa acaaaaccgg tggttgatct gctggggcag
     1501 tatcatgtgc aggtcatcct tgactatggt gccgaaggcg gacacaatgg cgagccgggt
     1561 ttcgacaaca gcatgcagca attcatcaag gtgattgact atgccggtgt gcaacccaac
     1621 ataccattca tgagtgtaaa agtgaccggc att
//
LOCUS       DATIQF010000576         2154 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_115916,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000576 DATIQF010000000
VERSION     DATIQF010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2154
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115916"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(26..1102)
                     /locus_tag="VLL95_09670"
     CDS             complement(26..1102)
                     /locus_tag="VLL95_09670"
                     /inference="COORDINATES: protein motif:HMM:NF025665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 99-like
                     domain-containing protein"
                     /protein_id="HSR39168.1"
                     /translation="MIKTRFLAYYLPQFHAIPENDEWWGKGFTEWTNVRKAVPLYNGH
                     RQPRVPSELGYYNLLDTEVMTRQSNMAQQYGIDGFAYWHYWFGGGKRLLEKPSQLMLD
                     NKDITIPFCFAWANQTWTGIWHGLDNKVLMAQEYPGMQDAIDHFYEVLPFFNDARYIK
                     IDNRPVFIIYKPWEHPFLQSFADLWQSLALKNGFDGVHFVGVSYSPELPEGLQAIALQ
                     QKYFLQKPIRFLDGMFKRIAGTTLTEYIRQSKYGCNRLDFGKVIQLVENEDFPTHCYP
                     TILSGWDNTPRSGKRGVVLENYDPDSFQVMCRAVVQKLMATRADFCMVKSWNEWAEGN
                     YLEPDEKYGRKFLDVFSNARRSLG"
     gene            complement(1099..1743)
                     /locus_tag="VLL95_09675"
     CDS             complement(1099..1743)
                     /locus_tag="VLL95_09675"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSR39169.1"
                     /translation="MRNNSIGDQYYSQDRSAMLPFVPATAKFILEVGCANGSFGEKIK
                     TRQDCCYYGIEPHELSAAKAATKLDQVFNCFFENAPIPAGMQFDCIVFNDVLEHLPDP
                     WLALRTCQRLLGPNGVIVCSIPNFLYWPVLRGIVVNRDWVHTEWGVLDRTHRWFFTPK
                     SMRRMMHSTGYKVVQMEGMKKYKSRAFGLINFMLMKKLEDYRYMQFALVCKMDQ"
     gene            complement(1743..>2154)
                     /locus_tag="VLL95_09680"
     CDS             complement(1743..>2154)
                     /locus_tag="VLL95_09680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39170.1"
                     /translation="SILIPTNLILYSVSSIFLIERQEKLLFRNSLVSALGIVGGVVIG
                     SFFSLKGVVVGLLLGNLLFTIPITGYNVLYRILSFSWSQILRIWGINWLIAFGLTVAY
                     IFAQHHLKIAIVAGYGLVFIVRGYNYYRLHLIKK"
BASE COUNT          648 a          495 c          409 g          602 t
ORIGIN      
        1 taagagacag tatctgcttc ccgctttagc caagggatct tcgtgcattc gaaaacacat
       61 ccaggaattt tctaccatat ttttcatccg gctcgagata gttgccttct gcccattcat
      121 tccaactctt caccatgcaa aaatcagccc ttgttgccat tagcttttgt acaactgctc
      181 tgcacatcac ttgaaaacta tccgggtcgt aattttctaa aacaacaccc cttttgccac
      241 ttcggggtgt attatcccag ccagaaagta tggtggggta acaatgggtt ggaaagtctt
      301 cgttctctac caactgaatt actttaccaa agtcaagcct gttacaccca tattttgatt
      361 gcctgatgta ttcagtaaga gtagtgccag caatgcgttt gaacattcca tcaagaaatc
      421 ggatgggctt ctgcaaaaaa tatttttgct gtaaagcaat ggcctgaagg ccttccggta
      481 attcaggaga ataacttaca cctacaaaat gaacaccatc aaatccattt ttcaaagcca
      541 atgattgcca aaggtcagcg aacgattgca ggaagggatg ttcccagggt ttgtagatga
      601 taaatacagg acggttgtct attttaatat aacgggcatc attgaaaaaa ggcaacactt
      661 cataaaagtg atcgatggcg tcctgcattc ccggatactc ctgggccatc aatactttat
      721 tatccaatcc atgccatata ccagtccagg tttgatttgc ccatgcaaag caaaatggaa
      781 tagtgatatc cttattatcc aacatcagtt gagaaggctt ttccaataat cgcttccccc
      841 caccaaacca ataatgccaa taagcgaaac catcaatccc atattgctgc gccatgtttg
      901 attgcctggt cattacttca gtatccaaga ggttgtagta ccctaattca gatggcactc
      961 gaggctgacg gtgcccattg tataatggca ctgcctttcg aacgttagtc cattcagtga
     1021 atccctttcc ccaccattca tcattttctg gaatggcatg aaactggggt agatagtagg
     1081 ctaagaatct tgtcttgatc attggtccat tttgcataca agtgcaaatt gcatgtaccg
     1141 atagtcttcc agctttttca tcagcatgaa attgatgaga ccgaatgccc tgcttttata
     1201 ttttttcatt ccttccattt gtacaacctt gtacccggtg gaatgcatca ttcttcgcat
     1261 gctctttggg gtaaaaaacc atcggtgagt acgatcaagt acaccccatt ctgtatgcac
     1321 ccaatctcga tttacgacta taccacgcag aactggccag tacaaaaaat tgggaatgga
     1381 gcaaactatg acaccattgg gacctaacag cctttggcaa gtacgcaggg ctaaccatgg
     1441 atctggcaaa tgctcaagga catcattaaa cacaatgcaa tcaaattgca taccagcagg
     1501 aataggagca ttctcgaaaa aacaattaaa aacctggtcc aatttggtag cagctttggc
     1561 tgcggaaagt tcatgcggct ctattccata atagcaacaa tcttgtcgag tctttatctt
     1621 ttcgccgaat gagccgttgg cacatccaac ttcaagaata aattttgctg tagctggaac
     1681 aaaaggcaac atggcgcttc tgtcctggct ataatattga tctccaatgg agttatttct
     1741 cattatttct ttattaaatg gagtctgtaa taattatagc ctctcacaat aaacacaagg
     1801 ccataccctg ccacaatggc aatttttaga tggtgctgag caaaaatgta tgccactgtc
     1861 aaaccaaatg ctatcagcca gttgataccc catatccgga gtatttggga ccatgaaaag
     1921 cttagtatcc ggtatagtac attgtatccg gtaatgggta tggtaaacaa aaggttacca
     1981 agcaagagtc ctaccactac acctttcaat gagaagaatg acccaataac cacgcctcct
     2041 acaatgccca aagcagaaac caacgaattc ctgaacagca atttctcctg gcgttctatc
     2101 agaaaaattg agctgacaga ataaagaatc aagttggttg ggataagaat ggat
//
LOCUS       DATIQF010000577         2565 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_298274,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000577 DATIQF010000000
VERSION     DATIQF010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298274"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..848
                     /locus_tag="VLL95_09685"
     CDS             <1..848
                     /locus_tag="VLL95_09685"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: protein motif:HMM:NF001484.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="isomerizing glutamine--fructose-6-phosphate
                     transaminase"
                     /protein_id="HSR39171.1"
                     /translation="SEFRYRNPIINPGDVIIAISQSGETADTLVALENAKEKGAFIFG
                     VVNAVGSSIARLSHAGAYTHSGPEIGVASTKAFTGQLAVLTMMALKLAKAKGTISPER
                     YMELLHELHAVPDKVAAVLEQTEKIKAIAEKYKDASDFLFLGRGYNFPVALEGALKLK
                     EISYIHAEGYPAAEMKHGPIALVDENLPVVFVATRDRFYEKIVSNVQEIKARKGKIIC
                     IASEGDGVIPGMANDVIFVPDADELVGPMISVIPLQLLSYYTGVAKGYDVDKPRNLAK
                     SVTVE"
     gene            1006..>2565
                     /locus_tag="VLL95_09690"
     CDS             1006..>2565
                     /locus_tag="VLL95_09690"
                     /inference="COORDINATES: protein motif:HMM:NF015722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="HSR39172.1"
                     /translation="MKITNLLVLAGVVAMGTSCKEGGLFSKKHDKSGATGWNYNDKNQ
                     GGFNVAKAKDIKAGPGLVFVQGGTFVMGATEEDVMADWNNVPKRITVNSFFIDRTEVA
                     NVHYREYLFWLNRVFDPEADPANLPIVNAAYPDTLVWRSELAFNEPYVEYYFRHPSFN
                     YYPVVGVSWKQAYDYCLWRTDRVNELALIQGGFINKNEMKTMQGKGSDAFNTKAYLLG
                     LTTPPPGAAAKSKKNPLTDPNGRPRTQVTVEDGIMSPEYRLPTEAEWEYAALAYIAQN
                     PQPRRKEKSKRGEELVANKQVYSWNNNFNGLRDNRRGSWQGEMLANFKRGAGDLMGVA
                     GGLNDRAATPAPVESFFPNGFGLYNMSGNVSEWVADVYRPSTYEVGDDFNYYRGNVFK
                     KLYVADPTTGDPATRYEKDSTGRVKMINENNADLAKRRNYNKYYAIDYMDGDSLSGAS
                     YGYGRTTLISDQSRVIKGGSWLDMPYWLSPGNRRFLEEDQATSTIGFRCAMTYFGSPE
                     GNRTRSGNYWST"
BASE COUNT          685 a          656 c          671 g          553 t
ORIGIN      
        1 cctcagaatt tcgataccgc aacccgatta tcaatcccgg agatgtgatc atcgccattt
       61 cgcaaagtgg cgaaacggca gacacccttg tggcactgga aaatgccaag gaaaaagggg
      121 ctttcatttt tggggtggta aatgcggtag gaagcagtat cgccaggctg agccatgccg
      181 gagcttacac ccacagcgga ccagaaatcg gggtggccag taccaaggct tttaccggcc
      241 aactggcagt actcaccatg atggccctga aactggccaa agccaaaggc accatcagcc
      301 cagaacgata tatggaatta ctccatgaac tgcatgcagt acccgataag gtagctgctg
      361 tattggagca aaccgagaag atcaaggcga ttgctgagaa atacaaggac gccagcgact
      421 tcctgttcct gggtcggggc tacaactttc cggtggcgct ggaaggggcg ctgaaactga
      481 aagagatcag ctacatccat gccgaagggt accctgctgc ggaaatgaaa cacgggccta
      541 tagcgctggt tgatgaaaac ctgccggtag tgtttgtggc cacccgtgac cgtttctatg
      601 agaaaatcgt atccaacgta caagagataa aggcccgaaa aggtaaaatc atatgtattg
      661 cctccgaagg cgatggtgta atcccgggca tggccaatga cgtcattttt gtgccggatg
      721 cagatgaact ggtgggcccc atgatcagtg tgatccccct tcaactgctg agctactaca
      781 ccggtgtggc caagggctat gatgttgaca agccccgcaa cctggcaaaa agcgtaactg
      841 ttgagtaagc ccgggcgctt ttcacagttg tgggaaacat ttcgagggta gactgttaca
      901 ggcaattgta ctcaatcggt acattcgcag gtcaggtaaa ggcatttgca caataatatg
      961 tgcgcctttc cgttactaat ccagaaaatc tgtatcaccg atactatgaa aattactaat
     1021 ctattggtac tggccggggt ggtggcaatg ggcacctcct gcaaagaagg cggattgttt
     1081 agcaaaaagc acgacaaatc aggcgcaacc ggctggaatt acaacgataa gaaccagggt
     1141 ggttttaatg tggccaaggc caaagacatt aaggcagggc ccggtttggt atttgttcag
     1201 ggtggcacat tcgtaatggg cgctactgaa gaagacgtaa tggccgattg gaacaacgtt
     1261 cccaaacgca ttacggtcaa ctccttcttt atcgaccgta ccgaggttgc caacgttcat
     1321 taccgggaat acctcttttg gctgaatcgt gtattcgacc ccgaagccga ccccgccaac
     1381 ctgcccatcg taaatgcggc ttaccctgat acactggttt ggagaagcga actggctttc
     1441 aacgagcctt atgtggaata ttacttccgc caccccagtt ttaactacta cccagtggtt
     1501 ggcgtaagct ggaagcaggc ttatgactac tgcctgtggc gtacagaccg tgtaaatgaa
     1561 ctggccttga tccagggtgg tttcatcaat aaaaatgaaa tgaaaaccat gcagggcaag
     1621 ggttctgatg ccttcaatac gaaagcatac ctgctcggat tgacaactcc tcctcccggc
     1681 gcagccgcca agagcaaaaa gaatccatta actgacccca atggccgccc ccgtacccag
     1741 gttactgtag aagatggcat aatgagtccg gaataccgcc tgcctaccga ggctgaatgg
     1801 gaatatgcgg ccctggccta tatagcccag aacccacaac cccgccgcaa ggagaaaagc
     1861 aagcgtggtg aggaactggt ggccaataag caggtttact cctggaacaa caacttcaat
     1921 ggtctccgcg acaaccgtcg tggcagctgg caaggtgaaa tgctggccaa cttcaagcgg
     1981 ggcgctggtg acctgatggg tgtagccggt ggcctgaacg accgtgccgc tactcctgcc
     2041 cccgtagaaa gcttcttccc caatggtttt ggattgtata acatgagtgg caacgtaagc
     2101 gaatgggtag ccgacgtata tcgtccttct acctatgaag tgggcgatga tttcaactac
     2161 taccgcggta acgtgttcaa gaaactttac gtagccgatc ctaccacagg cgatcctgcc
     2221 acccgttatg aaaaagactc aaccggcagg gtgaaaatga tcaatgaaaa caacgcggac
     2281 cttgccaagc gcaggaacta caataagtac tatgccatcg actacatgga tggtgacagc
     2341 ctgagtggcg ccagctatgg ttatggccgc accactttga ttagtgacca aagccgtgtg
     2401 atcaaaggcg gtagctggct ggatatgccc tactggctca gccctggtaa ccgtcgcttc
     2461 ctggaagaag accaggccac cagcaccatt ggcttccgtt gcgccatgac ttatttcggt
     2521 tcacctgaag gcaaccgcac ccgcagcggt aactactggt cgacc
//
LOCUS       DATIQF010000578         4360 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_85365, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000578 DATIQF010000000
VERSION     DATIQF010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4360
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85365"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1853)
                     /locus_tag="VLL95_09695"
     CDS             complement(<1..1853)
                     /locus_tag="VLL95_09695"
                     /inference="COORDINATES: protein motif:HMM:NF019135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HSR39173.1"
                     /translation="MQMFVTNGNRNGSLLFNMLAAVLLMAGVTRPGAAGAQDEQGLPF
                     ITNYQAKVFNALPQVWSIQQDSQSFMYFGAQNFMLQFDGVKWRRIHTSNHGASTVIRS
                     MGKGPDGRIFYGAYSDFGYLDYDSMGQRKPISLLAQVPQQFRSFNDVWTVHVSADAVY
                     FQAREYMFRVMLNKDGTPSNAPAKVWQPTSKFMYSFYLDNTLYIHQQGLGLYRLENDS
                     IVLIPGSEFTGKERMQVMLPYKGNDNKPQYLLGLFYSGMYLFDGKQFKPFVTSADDIL
                     KSGSILYKGLLMKNGHYVLATTGKGLVVIDKNGQLLQKINRDVGLQDESIYALFEDNK
                     GALWLGLDNGISRVETSSPFSRFSLQSGINTGVLNLARFEGRLYLGTTNGLLVYDNNT
                     SKFTPIDGVPQNQIFNLVQVGNQLMVPGDGLFAVQNNKVSVLQQSVSADLTISNVYVT
                     KRNKNLMLGGGTFGLAIFYKQGDQWKYSGYLPGLSDQVWTITEDEEGHIWAGTQNAYA
                     YRITPQFDAEGHINSNATKIERMGAEQGLVLGLGNVYNIKGVNYFPADSNIFRFDNAT
                     NRFVVDTTFGTFPDGGGTNEFDMQEDPKGRVWVRFGKEIYLATPRPGGGYD"
     gene            2108..3136
                     /locus_tag="VLL95_09700"
     CDS             2108..3136
                     /locus_tag="VLL95_09700"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HSR39174.1"
                     /translation="MANLKLMVWNMEWMNDLFAGNGLFRPDNEKTQHNSAATIKQRRD
                     ALSTVIKELNPDILVVVEGPNITAEWQLFLDTDLPGTWQGHIQASPGMTQCIGVALRK
                     DSGKFATDAIETFDSLQIEAFKEWSMDLEDDGITEVYKFERSPLYIQVKTSDNKIFRL
                     LGLHLKSKLVSSAMEWSRWWESADANRRKIFAQASRIRQEFLDAYLSDPATANIPLVV
                     CGDINDGPGMDTSERKIMGSGIERLMGSVWFPQLTLGNALFDSLKPADQRKLRFDKIA
                     TTSYADPIFNGTYHNEWIDHLLYSRNTAAKWILNAAAVKDLSQGPIHKAPYKHSSDHY
                     PIIADIVL"
     gene            complement(3201..3635)
                     /locus_tag="VLL95_09705"
     CDS             complement(3201..3635)
                     /locus_tag="VLL95_09705"
                     /inference="COORDINATES: protein motif:HMM:NF013814.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaE/Pmp3 family membrane protein"
                     /protein_id="HSR39175.1"
                     /translation="MKTKLTLSILVVFLFTSIANAAFIPSKSESSQEKTSKQYNSNLH
                     GFMSLNKKSYEQLTGKKMTLKEKVSLKFAQKMMAKEAKKKEGGSLPKWAYIVLSIIAL
                     GWLAIGIRSNWKTNDWWISLLLYFLFIIPGIIYSLIVMKKYY"
     gene            complement(3736..4266)
                     /locus_tag="VLL95_09710"
     CDS             complement(3736..4266)
                     /locus_tag="VLL95_09710"
                     /inference="COORDINATES: protein motif:HMM:NF013234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39176.1"
                     /translation="MKKPTFGAGATAQEVFAAMEAYIEQTGLKVVDKDYSRPWGGFFV
                     LDESQADQFIQMYFPGYTREQLMLGEKLSPKFLVVAPNKRLSWQYHFRRAEIWRVLTG
                     PVKVAISETDEEKPGQLYQDGEIIVLQKGTRHRLIGAPDNFGVVAEIWQHTEPEHPSD
                     EEDIIRLQDDFGRSPL"
BASE COUNT         1076 a         1060 c         1032 g         1192 t
ORIGIN      
        1 atgtcatagc ctccacccgg acgtggggtg gccaaataga tttccttgcc aaaccttacc
       61 cacactcttc ctttggggtc ctcctgcata tcaaattcat tggtgccccc gccatccgga
      121 aaagtgccga aggtggtgtc taccacaaag cgattggtcg cattgtcaaa gcgaaagatg
      181 ttggagtcgg cggggaaata attaacccct ttgatattgt aaacgtttcc caatccaaga
      241 accaggcctt gttcagcacc catgcgttct attttggtgg cgttgctgtt gatatgtccc
      301 tccgcgtcaa actgtggtgt gatccggtag gcatacgcgt tttgtgtgcc cgcccaaata
      361 tggccttcct catcttcggt tatcgtccaa acctggtcgc tcaatcccgg gaggtaacca
      421 ctgtacttcc actgatctcc ttgtttgtaa aatattgcca ggccaaaagt gcctccaccc
      481 agcatcaggt tcttattgcg tttggttaca tacacattgc tgatggtcaa atcggcgctg
      541 actgattgtt gcagaacaga tactttgtta ttctgcacag caaacaatcc atcacccggc
      601 accatcagtt ggttgcctac ttgcaccagg ttgaatatct ggttctgcgg aacgccgtcg
      661 atcggtgtga attttgatgt attgttgtcg taaaccagca agccgttggt ggtgcccagg
      721 taaagacgcc cttcaaaacg ggcaaggttg agtacaccgg tgttgatgcc ggattgaagc
      781 gagaacctgc tgaatggaga ggaggtttcc acccttgaaa tgccattgtc gaggcccagc
      841 cacagtgcac ccttgttgtc ttcgaataag gcgtaaatcg attcgtcctg caggcctaca
      901 tcacgattaa tcttttggag caactgcccg tttttatcaa tcacaacaag ccctttgccg
      961 gtggtggcca gtacataatg gccgttcttc atcaagagac ctttgtacaa gatcgaaccc
     1021 gacttcagga tgtcgtccgc tgaagtgacg aatggtttga actgctttcc atcaaacaga
     1081 tacatgccac tgtaaaacaa acccaacagg tactgtggtt tattgtcatt gcctttgtaa
     1141 gggagcatca cctgcattct ttcttttccg gtgaactcac tacccgggat caggacgata
     1201 gagtcatttt ccagcctgta aaggccaagc ccctgttggt gtatgtacag cgtattgtcg
     1261 aggtaaaatg agtacatgaa cttcgaagtg ggctgccaga cttttgcggg tgcgttggag
     1321 ggtgtaccat ccttgttaag catcacccgg aacatgtatt cccttgcctg gaagtaaacg
     1381 gcatcagcac tgacatgaac cgtccataca tcattgaagc tccgaaattg ctggggtacc
     1441 tgtgcaagca gtgatattgg tttgcgctgc cccatgctgt cataatccag gtagccaaaa
     1501 tcggagtagg ccccgtagaa tattctgcca tcagggcctt tgcccataga tcggatcacc
     1561 gtgctggccc cgtgattgga ggtatggatc ctgcgccact ttacaccatc gaactgcagc
     1621 ataaagtttt gggcgccgaa atacatgaat gactggctgt cttgctgtat gctccatacc
     1681 tggggaagcg cattaaagac ttttgcctgg taattggtga tgaagggcag cccctgctca
     1741 tcctgtgccc cggctgcacc cgggcgggtc acgcctgcca tcaacagcac ggcagcgagc
     1801 atattgaaca gcaaggatcc attgcggttc ccattggtta caaacatttg catcttcaat
     1861 tcttgttgtt aagcaattag gtcagcttcg atagcgggtt ggcgcatgac agcactaagc
     1921 cgtatagaaa gtggggtcaa aggattgatt ctaaatataa tacgtttttc tgcaaaagca
     1981 atagccctaa cattttgcca ttgtggttct gcagctgcca ggcgcctcgt attggtctgc
     2041 gatttttgtt ttgcttgcag tttcgaaagg cattttttac cttttgattt cacttaaaca
     2101 tcacacaatg gccaatctca aactcatggt atggaacatg gaatggatga acgacctgtt
     2161 tgccggcaat ggtttgttcc gccccgacaa tgaaaaaacc cagcacaata gtgccgccac
     2221 cataaagcaa cgccgcgatg ctttgagcac agtgatcaaa gaactcaatc ctgatatcct
     2281 ggtggtggtg gaaggcccga acattacggc cgaatggcaa ttgtttcttg acactgactt
     2341 gcccggcacg tggcaaggac acatacaggc gtctccgggc atgacacagt gtattggcgt
     2401 tgcattgcgg aaagactccg gaaagtttgc aactgatgct attgaaacat tcgattctct
     2461 tcagattgaa gccttcaaag agtggagcat ggatttggaa gacgacggta ttacagaggt
     2521 ttacaagttt gagcgcagcc cactgtatat ccaggtcaaa acttccgaca ataagatatt
     2581 ccgcctgctg ggccttcacc tgaaaagcaa actcgtgtcc agtgcaatgg agtggagccg
     2641 ctggtgggaa agtgccgatg ccaatcggcg caaaattttc gcacaggcat cacgcatacg
     2701 gcaggagttc ctcgatgctt acctgtctga cccggcaacc gccaatatac cgctggtagt
     2761 gtgtggcgat atcaacgatg gcccgggcat ggataccagt gaaagaaaaa ttatgggcag
     2821 cggcatcgaa cgtttgatgg gcagtgtatg gttccctcaa cttacattgg gcaatgcttt
     2881 gtttgatagt ttgaaacctg ccgaccagcg caagcttcgt tttgataaaa tagccaccac
     2941 cagttatgct gatcccattt tcaatggcac ttatcacaat gaatggatcg accatttgct
     3001 ctacagccgc aatacagccg caaagtggat attgaatgca gcggccgtga aagacctgtc
     3061 gcagggaccc attcacaaag cgccatacaa acattcgagt gatcactatc caattatcgc
     3121 ggatattgtc ttataacaaa aaacgcaacc tcaaaaggtt gcgtttttat tcagcacaca
     3181 atgaaatcaa tcattgccgc ttagtagtat ttcttcatta caatcagtga gtaaatgatg
     3241 ccggggatga tgaacagaaa atagagcagc aatgatatcc accaatcgtt ggttttccaa
     3301 ttgcttctga taccaatggc gagccaacca agggcaatga tggacaaaac gatatacgcc
     3361 cactttggca gactgccgcc ttctttcttt ttagcctctt tggccatcat tttttgcgca
     3421 aacttcaatg agactttttc cttcagcgtc attttcttgc cggtcagttg ctcataactt
     3481 ttcttgttca ggctcatgaa gccatgaagg ttggaattgt attgctttga tgttttttcc
     3541 tggctgcttt ctgatttgga tggaataaaa gctgcattgg caatgcttgt gaaaaggaac
     3601 acaaccaaaa tggacagcgt gagttttgtt ttcatagccg atagtttgtg gtgaacgaaa
     3661 atggttgaac taatatacaa tagccgccat tccttgcttt ccgatctctc cggaatttat
     3721 taacatttgg atgttctaga gtggacttct tccaaaatca tcttgcaggc gtatgatgtc
     3781 ttcttcgtcg ctggggtgtt ctggttctgt atgctgccat atttcggcca ccaccccgaa
     3841 attgtcgggt gccccaatca gccggtgccg ggtgcctttc tgcagcacta tgatttcgcc
     3901 gtcctggtac agttgtccgg gcttttcttc gtcagtctcg ctgatggcca cttttacagg
     3961 accggtaagc acccgccata tctctgcgcg gcgaaaatga tactgccagc tgagcctttt
     4021 attgggagcc accaccagga atttggggct tagtttttcc cccaacatca gttgctcccg
     4081 ggtgtagccg ggaaaataca tttgaatgaa ttggtcagcc tgtgattcgt ctaatacaaa
     4141 aaagcctccc catgggcgtg aatagtcctt gtctactact tttaaaccgg tttgctcaat
     4201 atacgcttcc atggcggcaa aaacttcctg tgcggtggca ccggcgccaa aagttggttt
     4261 cttcatctcc aacttgtttt tttgaggtgg tgcgaatatc aggattgcaa ccgaataact
     4321 tcatgacaga tgataagctt attgcaggcc tgccaccgat
//
LOCUS       DATIQF010000579         2921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_268069,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000579 DATIQF010000000
VERSION     DATIQF010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2921
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268069"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..258
                     /locus_tag="VLL95_09715"
     CDS             <1..258
                     /locus_tag="VLL95_09715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39177.1"
                     /translation="VIMLVGYGIALKGMVTPGAAPFKAGTIRHIFRSSQFSSAKAQAK
                     LGWQITPLEASIQRTLAFHDKKPSRLNQPNVQPQNNFYELA"
     gene            245..1078
                     /locus_tag="VLL95_09720"
     CDS             245..1078
                     /locus_tag="VLL95_09720"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR39178.1"
                     /translation="MNWHNHHTTVITGACGGIGKAFASQCAALGHRLVLIDLDLQQLR
                     QLQQWLVKNHQVEVFVVKADISNLHEIETLANFFEIHRLRITWLINNAGIGHTSLFER
                     TASSHLYKELSVNVLGTTLLTHALLPFFNHYQQGCILFMSSLASFYALPFKNTYGASK
                     AYVTQFAGALRFELKDRDISVSVCCPGFVNSTVQQFLSIARLPRLEQMLTINPKIVVA
                     QAIEGVQAGKHLIIPGLMARLLFHITRMLPAGMLKKATERKFRSMKGLLLKPVVNPAI
                     S"
     gene            1102..1794
                     /locus_tag="VLL95_09725"
     CDS             1102..1794
                     /locus_tag="VLL95_09725"
                     /inference="COORDINATES: protein motif:HMM:NF016041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HSR39179.1"
                     /translation="MKTLAMGYLNIQRTRILLCVIIPALLPLGGIVLFQWLPTAVLKY
                     FFFTKGIVAWTFTEYCTHRWAFHGRPNKSSKDRDMFNHTYHHTHPADMIITPFVRMLC
                     AAVLIAGAWGLVAGSVWVAYPLGWLCGLASYLFMHYFLHQPAAVKYVPNLVKQHIWHH
                     CKYHDKCFGVVSTFWDRVFKTQPAHFRELPEKMVRFYYSHHQLGEPYIEMIKHRLMAK
                     TGTVEKHMGEAA"
     gene            1984..>2921
                     /locus_tag="VLL95_09730"
     CDS             1984..>2921
                     /locus_tag="VLL95_09730"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HSR39180.1"
                     /translation="MKAVSNHLATVSGPVLVTGATGLVGHALVCRLLEDGYVVHALIR
                     NPLKAKFPATDHLRIFLGDITNPDEVVRAMEGCACVFHTAAMTKPWTKDRAQMYKVNL
                     GGTRHVLDAALKLNIKRVVFTSSCAVAGPSFNAPLTEEDPRMAPYLHDYEISKKLAED
                     LVTVYRQKGLDVVIVSPAKVFGEGIPSHSISLNSIITGFLKRKFIVLPRPGNYLVSVI
                     YLKDVVQGHVLAMWQSPPNEKYFLSGHWLPQSEIFSKVAQMAGVAARVIIVPKWLARA
                     ISYSMFIRSLFTPDDSFNPHSVKALFHHYAYSSEKA"
BASE COUNT          719 a          749 c          723 g          730 t
ORIGIN      
        1 gtaataatgc tggtgggcta tggcattgca ttgaaaggaa tggtgacgcc gggtgccgct
       61 ccattcaagg caggcaccat ccgccatatt ttcaggagca gccagttttc ttcagcaaaa
      121 gcccaggcaa aactgggatg gcaaatcacg ccgctggaag cgtccataca acgcacattg
      181 gcattccatg acaaaaagcc atcacgctta aatcaaccta atgttcaacc ccaaaacaat
      241 ttttatgaac tggcataacc accacacaac tgtgatcacc ggcgcctgcg gaggcatcgg
      301 caaagcattt gcttctcaat gcgcagcact tggccaccgg ctggtgctca tcgatcttga
      361 tttgcaacag ctgaggcaat tgcaacaatg gctggtcaaa aaccaccagg tggaagtgtt
      421 tgtagtgaaa gccgatatca gcaacctgca cgaaatagaa acgcttgcca acttttttga
      481 aattcaccgg cttcgcatca cctggctcat caataatgca ggtatcggcc atacgtcttt
      541 gtttgagcgt accgcgtcct ctcacctgta caaggaattg tcggtgaatg tgctgggcac
      601 tacgctgctc acccatgcat tgctgccctt tttcaaccac taccaacagg gttgcatcct
      661 gtttatgagc agccttgctt cgttctatgc attgcctttc aaaaacacct atggagcttc
      721 caaagcctat gtcacccagt ttgccggcgc cctgcgtttt gagctgaagg accgcgacat
      781 cagtgtgtcg gtttgttgcc cgggatttgt gaactcaacg gttcaacaat tcctctccat
      841 tgccaggctg cctcggctgg agcagatgct gaccatcaat ccaaaaatcg tggtggcaca
      901 agccattgag ggcgtgcagg caggaaagca cttgatcata cccgggctca tggcaaggct
      961 gctctttcat attacccgca tgctgccggc aggaatgctg aaaaaagcga ctgaaagaaa
     1021 gttccggtcg atgaagggat tgctgctgaa accagttgtc aaccccgcaa taagctaatc
     1081 tctaaaatca atcattttgt tatgaaaacc ctggcaatgg ggtacctgaa tattcagcgt
     1141 acccggatac tgttgtgtgt cattattccc gcgttgttac cattgggagg cattgtactg
     1201 tttcaatggc tgcccaccgc ggtgctcaag tatttcttct tcaccaaggg cattgtggcc
     1261 tggacattta cggagtattg cacccaccgt tgggcatttc atgggcggcc caataaatca
     1321 tcaaaagacc gcgacatgtt caaccacact tatcaccaca cccatccggc agacatgatc
     1381 attacaccct ttgtacgcat gctgtgcgcc gcggtactga tcgccggtgc ctggggtctt
     1441 gtagcaggtt cggtttgggt ggcctatcct ttggggtggc tttgcggact ggcgtcatac
     1501 ctgttcatgc actactttct gcaccagccg gccgcggtga agtacgtgcc caatcttgtg
     1561 aagcaacaca tctggcatca ctgcaagtat cacgacaagt gctttggggt ggtttccact
     1621 ttctgggaca gggtattcaa aacccaaccc gcacatttcc gtgagttgcc cgaaaaaatg
     1681 gttcgctttt attactcgca tcatcagctg ggtgagccat acatagagat gatcaaacat
     1741 cggttgatgg ctaaaactgg gacagtagaa aagcacatgg gagaagcagc ctagcagcag
     1801 aggcttttcc catgttcccg gacctcgacc tgataccccc gcctgccatg gccaatcaaa
     1861 atttcaatat gccatcatgg aatttgcact cttttttttg taacttaaag cagcagcaag
     1921 agcccatgat gacttgagtc atgtgggctt gttgttattg tcgaaacagt gtaattgctc
     1981 tttatgaaag ctgtttcaaa ccatctggca accgtttccg ggccggtgtt ggtaaccggt
     2041 gccacaggat tggtggggca tgcattggtg tgccggctgc tggaggatgg atacgtggtg
     2101 catgcgttga taagaaaccc gttgaaagcg aaatttcccg caacagatca tctgcgcatt
     2161 tttttgggcg acattaccaa tcctgatgaa gtggttcgtg ccatggaagg ttgtgcctgt
     2221 gtttttcaca ccgctgccat gaccaagccg tggacgaaag acagggcgca gatgtacaaa
     2281 gtaaacctgg gcggcacccg ccatgtgctc gatgctgccc tgaaactgaa tataaaacgg
     2341 gtggtcttca cgagttcctg cgctgttgcc gggcccagtt tcaacgctcc actcacagaa
     2401 gaggatccga ggatggcgcc ctacctgcac gattatgaaa tttccaaaaa actggcagaa
     2461 gacctggtaa ccgtgtatcg gcaaaaagga ctggacgttg tcattgtcag tccagccaaa
     2521 gtgtttgggg aaggcatccc gagtcattcc atttccctga acagcatcat cactgggttt
     2581 ctgaaaagaa agttcattgt attgcccagg cccggtaatt acctggtgag tgtgatctat
     2641 ctgaaagatg tggtgcaggg gcatgtgctg gccatgtggc agagtccgcc taatgaaaaa
     2701 tatttcctct cgggccattg gttgccgcaa tctgaaattt tcagcaaagt ggcacaaatg
     2761 gcaggtgttg cagccagggt catcatagtg cccaaatggc tggcccgggc catcagctat
     2821 tcaatgttca tcaggagcct gttcaccccg gatgattcct tcaaccccca ttcagtaaag
     2881 gcgctgtttc accactacgc atattcatcg gaaaaggccc a
//
LOCUS       DATIQF010000580         1616 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_298355,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000580 DATIQF010000000
VERSION     DATIQF010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298355"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..662
                     /locus_tag="VLL95_09735"
     CDS             <1..662
                     /locus_tag="VLL95_09735"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR39181.1"
                     /translation="AWREMARQVAHEIKNPLTPMKLNLQFLQKAITEKSPDVQEISMR
                     VASSLVSQIDHLSKIALDFSQFANIGNARTSTFDLQTVIRDLVNLYDTQEHMHIAWNP
                     VEQPVYINADKTQMNRLFTNLLQNASEAADGLPGFRITINESVSDRHVLIEVKDNGPG
                     IPADIQPRIFMPNFTTKSSGTGLGLAICKAIVENAGGRIWFRTSAQEGTSFFVELPLS
                     R"
     gene            complement(651..>1616)
                     /locus_tag="VLL95_09740"
     CDS             complement(651..>1616)
                     /locus_tag="VLL95_09740"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase/3'-5' exonuclease PolX"
                     /protein_id="HSR39182.1"
                     /translation="IMTTPAEWGMASIHHSGSAAFNEALQQLLPANTDMLSEEELFSA
                     AGLAFIPPALRDRAEIIGQAKTGSLPELIAPGDIRGIIHTHSTWSDGSHSIEQMATAA
                     KAAGLDYLVISDHSRSATYANGLSEERIREQHQEIDRLNTALAPFKIFKSIECDILGD
                     GQLDYTNEVLATFDLVIASVHSNLKMSEEKAMQRLLTAISNPYVTILGHMTGRLLLSR
                     NGYPIDHNAIIDACIANHVVIELNAHPRRLDIDWRWIGNVTEKGGLISINPDAHAVEG
                     YADTRYGVLVAQKAMLTKEKNLSSFTLQAFESFLAATKKAKGLAA"
BASE COUNT          385 a          400 c          418 g          413 t
ORIGIN      
        1 tggcgtggcg tgaaatggcc cggcaagtgg cgcatgaaat caagaatccg ctcacgccga
       61 tgaagctgaa cctgcagttt ttgcaaaaag ccataacgga aaaaagtccc gatgttcagg
      121 agatctcaat gcgggtagcc agcagtttgg tgagccagat cgatcacctc tcgaagatcg
      181 cattggattt ttcccagttt gccaatatag gcaatgcccg caccagcacg tttgatttgc
      241 aaacagtgat ccgcgatttg gtgaatttgt atgatacgca ggaacacatg cacattgcat
      301 ggaacccggt ggagcaaccg gtttatatca atgcagataa gacgcagatg aaccgcctgt
      361 ttaccaacct gctgcagaat gcatccgaag ccgctgatgg tctgcccgga ttcaggatta
      421 ccatcaatga gtccgtttcc gacaggcatg ttctgattga agtgaaagac aatggtcccg
      481 gaattcctgc tgatattcag ccacgcatat tcatgcccaa cttcactacc aaatcaagcg
      541 gtaccggttt gggattggct atttgcaaag ccatcgtcga gaatgctggc ggacgcattt
      601 ggttccgtac ttcggcgcag gagggtacct cattttttgt ggagctcccc ttaagccgct
      661 aaacctttgg cctttttggt ggctgccagg aaagattcaa atgcctgcaa cgtaaaactg
      721 ctcaggtttt tttctttggt aagcatggct ttttgcgcca ccagaacacc gtaacgtgta
      781 tcggcataac cttcgacggc gtgtgcatcg gggttaatag agatcaggcc gcctttttca
      841 gtcacattcc caatccatcg ccaatcgata tccaggcggc ggggatgggc attcagttca
      901 atcaccacat gattagcaat gcatgcgtca ataatggcgt tgtggtcaat agggtaccca
      961 ttgcggctca gcagcaagcg ccccgtcata tgccccagta tggtcacata agggttagaa
     1021 atggctgtga gcaggcgctg catggctttt tcctcactca tcttcaagtt ggagtgcact
     1081 gaagcaatta caaggtcgaa agtggccagc acttcgttgg tataatccaa ttggccatcg
     1141 cccagtatgt cgcattcaat gctcttgaaa attttgaacg gtgccagtgc agtatttaac
     1201 ctgtcgattt cctggtgttg ttcccggatc ctttcttccg agagtccatt agcataggtg
     1261 gcagagcggc tgtgatcgct tatcaccagg tagtcaaggc cggcagcttt ggcggcggta
     1321 gccatttgtt caatactgtg gctgccatcg ctccaggtac tgtgtgtatg aatgatgccg
     1381 cgaatgtcac ccggtgctat caattcagga aggctgcccg ttttagcctg gccaatgatc
     1441 tctgccctgt cacgcagtgc cggtggaata aaagcaagcc cggcagcaga gaatagctcc
     1501 tcttccgaaa gcatgtcagt attggccggc agcaattgtt gtaaagcctc gttgaatgct
     1561 gcagagccag agtgatggat ggatgccatg ccccattctg ccggcgtggt cattat
//
LOCUS       DATIQF010000581         4695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_252591,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000581 DATIQF010000000
VERSION     DATIQF010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4695
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252591"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..181
                     /locus_tag="VLL95_09745"
     CDS             <1..181
                     /locus_tag="VLL95_09745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39183.1"
                     /translation="FCNPAPDADIKSVGQENFDWVIETSANYAIERALAQEPGKDNLT
                     WGEYIKKSAAHLPLY"
     gene            319..1425
                     /locus_tag="VLL95_09750"
     CDS             319..1425
                     /locus_tag="VLL95_09750"
                     /inference="COORDINATES: protein motif:HMM:NF010039.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0042398 - cellular modified amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylate-amine ligase"
                     /protein_id="HSR39184.1"
                     /translation="MALSYKHFTLGIEEEYMVIDPVTKELKSHDQKIVTEGQKVIRDK
                     VKAEMHQAVVEVGTDICQNIEEAYKDISALRRTIKTIAGELDLSIGASGTHPFSHWER
                     QLITDHARYNQLIDELQEAARSNLIFGLHVHVGMENRDMAMHLANSARYFLPHVYALS
                     TNSPFWEGRRTGYKSFRTKVFDKFPRTGLPEYFENVESYDKFVNLLIKTNCIDNAKKI
                     WWDLRVHPFFNTVEFRICDIPMTVDETIAIAALFQAICAKLYKLRSQNLNFMMYPRPL
                     INENKWRASRYGIDGTLIDFGKEAEVNTRALIYELLDFVDDVLDPLGSRHAVGYVRRM
                     LEQGTGADRQLKVYEETGGDLQKVAAFIEESFLA"
     gene            complement(1463..2122)
                     /locus_tag="VLL95_09755"
     CDS             complement(1463..2122)
                     /locus_tag="VLL95_09755"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSR39185.1"
                     /translation="MAAILESWEVNARHWIEVLNAGELESRKLVTNAAVVNAIERWCP
                     GLVLDAGCGEGWLCRALQREGIATVGVDGVAELIHEARLKGDGHYEHLSFEDLLHYHF
                     WPVAYFDVVVFNFCLYENELTRQLLKAALRWVPVRAKLVIQTLHPLSVLEPGEAYTDG
                     WKNERWAGLSRPFTHPYRWYFRTVGSWVDVVQKSGWELVKLDEPIHPRTGKPASLLIT
                     A"
     gene            2356..2841
                     /locus_tag="VLL95_09760"
     CDS             2356..2841
                     /locus_tag="VLL95_09760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39186.1"
                     /translation="MKMIKLAILDLYEGYANQGMRCIREIVQDFATQRQLQLAMDEFD
                     VRRHHEVPDLSYDVFICSGGPGSPLESEGSTWELRFFEWLQQVENWNNQPGNFPKKHV
                     FFICHSFQLACRHYQVGDVCKRKSTSFGVFPVHMLMGAENEPVFEGLQDPFYAVDSRD
                     Y"
     gene            2875..3189
                     /locus_tag="VLL95_09765"
     CDS             2875..3189
                     /locus_tag="VLL95_09765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39187.1"
                     /translation="MGASILCIEKARPHVTLERAIMAIRFNEYFFGTQFHPEADAIGM
                     SMYLQSEEKKQAVIDNHGFEKWKSMIEHLEDPDKILYTHDKVLPNFLKLAVKQLERAA
                     VA"
     gene            3359..4024
                     /gene="ccsA"
                     /locus_tag="VLL95_09770"
     CDS             3359..4024
                     /gene="ccsA"
                     /locus_tag="VLL95_09770"
                     /inference="COORDINATES: protein motif:HMM:NF013725.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HSR39188.1"
                     /translation="MKKNWWKILAVACLLYAFIGGILLPVPARPIVNESIRNLYYHVP
                     MWFGMMILMSVSVVNAIRYLRKNDLKYDILSRSYAATGMLFGILGIVTGAIWATFTWG
                     QPWSNDIKQILAAIALLIYAAYFILRSSIDDVDKQARVSAVYNIFAYTMLFPTLFIIP
                     RLYESLHPGGEGNPAMNQNDIDPLMRVIFWPAVLGWTLLGTWITTLYVRLAKIKDQNI
                     LHA"
     gene            4017..4238
                     /locus_tag="VLL95_09775"
     CDS             4017..4238
                     /locus_tag="VLL95_09775"
                     /inference="COORDINATES: protein motif:HMM:NF040113.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39189.1"
                     /translation="MPKAFKYLIVTTFILACCFAATAQMQQQPVEMADTMRSNGKIYV
                     VVAVLTTILAGIVLYLIRLERKIKQLEKE"
     gene            4313..>4695
                     /locus_tag="VLL95_09780"
     CDS             4313..>4695
                     /locus_tag="VLL95_09780"
                     /inference="COORDINATES: protein motif:HMM:NF014827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HSR39190.1"
                     /translation="MSSEYSFFQSVEKSFDKAAKFTKWDPGILEQIKACNSVYRMRFP
                     VKMDDGHIEVIEAYRVQHSHHKSPCKGGIRFSMEVNQDEVMALAALMTYKCAIVNVPF
                     GGGKGGIKVNPHKYSAYELEKITRR"
BASE COUNT         1250 a         1199 c         1101 g         1145 t
ORIGIN      
        1 cttctgcaac ccggccccgg atgcagatat caagagcgta ggccaggaaa atttcgactg
       61 ggttattgaa acttctgcca actatgctat tgaaagagca ctggcgcaag aacccggtaa
      121 ggacaacctt acctggggtg aatacatcaa aaaaagcgca gcacacctgc ctttgtattg
      181 atattccaac agaatgaata tgaaatccgg tgccctaacg agggtcgccg gattttttta
      241 tgggcatctg agagctattt ggtgtttgta gcctattttc aaagccctga ttaattgtga
      301 accaaaacgt tgcttcctat ggcattatct tataaacact tcacgctggg cattgaagaa
      361 gagtacatgg tgatagaccc tgtgacaaaa gaactcaaga gccatgacca aaaaattgtg
      421 accgaagggc agaaagtgat ccgtgacaag gtgaaggctg aaatgcacca ggccgtggtg
      481 gaagtaggca cggatatctg ccagaatatt gaggaagcct acaaagacat cagtgctttg
      541 cgccgcacca tcaaaaccat tgccggcgaa ttggatcttt ccattggtgc cagcggcacc
      601 caccctttca gccattggga aagacaactg attaccgacc atgcccggta caaccaactg
      661 atcgatgaac tgcaggaagc cgcccgcagc aacctcattt ttggtttgca tgtgcacgta
      721 ggcatggaaa accgcgacat ggccatgcat ttggccaaca gtgcccggta tttccttccg
      781 cacgtttatg cattgtccac caactctcct ttttgggaag gacgccgaac aggctacaaa
      841 tctttccgca ccaaagtctt cgataagttt ccccgcaccg gattgccgga atattttgaa
      901 aacgtggaga gctacgacaa attcgtcaac ctcctcatca aaacgaattg cattgacaat
      961 gccaagaaga tctggtggga cctgcgggtg catcccttct tcaatacggt ggagttccgc
     1021 atttgcgaca tccccatgac cgtggacgaa accattgcca tagccgcgtt gttccaggcc
     1081 atttgcgcca agctgtacaa gttgcgcagc cagaacctca atttcatgat gtatccccgt
     1141 ccgctgatca atgaaaacaa gtggcgggcc agccgctatg gcattgacgg cacgctgatc
     1201 gattttggaa aagaagcgga agtaaacaca agggcattga tttacgaact gctcgatttt
     1261 gtagatgacg tactcgatcc gctgggcagc cgccatgccg taggttatgt gcgccgcatg
     1321 ctggagcagg gcaccggtgc cgacaggcaa ttgaaagtgt atgaagaaac cggcggcgac
     1381 cttcagaaag tagcagcttt tatcgaagag agctttctgg cttaatacgc agcgacttta
     1441 ttcatttggg ccgcatcggc ttttatgctg taatcagcag gctggctggt ttccctgtcc
     1501 tgggatgaat gggctcatcg agcttcacca attcccaacc tgatttctgg accacatcca
     1561 cccaactgcc aacggttctg aaataccaac ggtaaggatg tgtaaagggc cgtgacaagc
     1621 ctgcccaccg ctcgtttttc cagccatcag tgtaggcttc gcccggctcc agcacactca
     1681 aagggtgcag cgtctgaatc accagcttgg ctcgaacagg aacccaccgc aaagccgctt
     1741 tcagcaattg acgggtcaat tcattttcat acaaacagaa gttgaaaacc accacatcaa
     1801 aataggcgac aggccagaaa tggtaatgta acaggtcttc aaaactgagg tgttcgtaat
     1861 gtccatcacc tttaagccgg gcttcatgaa tcagttcggc cacgccatct acccccaccg
     1921 tggcaatgcc ttcgcgctgc agcgcccggc acagccagcc ttcgccacag ccggcatcca
     1981 ataccaggcc aggacaccat cgctcaatag cattgaccac cgcagcgttg gttaccagct
     2041 tgcggctctc caattcgccg gcgttcagca cttcaatcca atgccttgca ttgacttccc
     2101 aggattcaag aattgcagcc ataacatatc ctccacttct taaagttctg aataatcagg
     2161 cagaaaaaag actggccacc ccttgtgcct ttcgcggagg gatgcccaac cctggagtcc
     2221 aggcgggtac ctgcggctgg gcattggcct taggcaccgg gtttatgcct tcaatttcca
     2281 caacccggca ggtttctggc caggacggag tgccttggta tccttttcaa tatttttgcc
     2341 ccttctccaa cttgtgtgaa aatgataaaa ctggccattc tggatctgta cgagggatat
     2401 gctaaccagg gaatgcgatg catacgcgaa atagtccagg attttgccac ccagcgccaa
     2461 ttgcagttgg caatggatga atttgatgta cgccggcacc acgaagtgcc cgatctcagc
     2521 tatgatgtat tcatttgcag tggaggtccg ggaagcccgt tggaatcaga aggcagcaca
     2581 tgggaactgc gctttttcga atggcttcag caagtggaaa actggaacaa ccaaccggga
     2641 aattttccca aaaaacatgt ctttttcatt tgccacagtt ttcaattggc ctgccgtcac
     2701 taccaggtgg gcgatgtatg caaacggaaa tccacctctt ttggtgtttt cccggtgcat
     2761 atgctgatgg gcgcagaaaa tgagccggtt tttgaagggc tgcaggaccc attttatgcg
     2821 gttgacagca gagattacta ggttatttcg cccaatcaca accgccttcg ggaaatgggt
     2881 gcatccattt tgtgcattga aaaagccagg ccacatgtta ctttggaaag agccatcatg
     2941 gccatacgct tcaatgaata ttttttcggc acgcagtttc accctgaagc cgatgcaatt
     3001 ggtatgagca tgtacctgca gagcgaagaa aaaaaacagg cagtaataga caatcacggc
     3061 tttgaaaaat ggaaaagcat gattgaacac cttgaggatc ctgacaagat cctttacacc
     3121 cacgacaaag tgctgcccaa tttcctgaaa ttggcagtga aacaactgga gagggcggcc
     3181 gttgcatagc gaatcgatga tacgctgcct gctgcattta gcacgagtgc atttcaacaa
     3241 aagaatttat tcatttgtgt taacagtatt cggccaaaac agccacaatt tgtggtgcat
     3301 ttcatcctat ttttgcggcc gctatcatca accaccaagg cttgatagcc attgatacat
     3361 gaaaaagaac tggtggaaaa tactggctgt tgcttgcttg ctgtacgcct tcattggcgg
     3421 gattttattg cctgtgcccg cacgtcctat tgtaaatgaa agcatccgca atttgtatta
     3481 ccatgtgccc atgtggtttg gcatgatgat attgatgagt gtatcagtag tgaacgccat
     3541 caggtatttg cgcaaaaacg acctgaaata cgatatcctg agccgcagct atgcagctac
     3601 cggcatgctg tttggtattc tcggcattgt caccggcgcc atttgggcca cctttacctg
     3661 gggccagcca tggagcaacg atatcaagca gattctcgct gccatcgcct tactcattta
     3721 tgccgcctat ttcatcctcc gttcttctat tgatgatgtt gacaagcagg cccgggtaag
     3781 cgccgtctac aatattttcg cctacaccat gctgtttccc accctgttca tcattcccag
     3841 gctttacgag agtctgcacc cgggtggcga aggcaatcct gccatgaatc aaaacgacat
     3901 agatcctttg atgcgtgtca tcttctggcc cgcggtactc ggctggacct tgctgggcac
     3961 atggatcacc acactgtatg tccgccttgc caaaataaaa gatcaaaata ttttacatgc
     4021 ctaaagcctt caaatacctt attgtcacca ccttcatact ggcatgctgc tttgctgcta
     4081 ccgctcaaat gcaacagcaa ccggtggaaa tggcagacac catgcgcagc aatgggaaaa
     4141 tttacgtggt ggtggccgtt ctcactacca ttcttgcggg catagtgctg taccttatcc
     4201 gcctggaaag aaagatcaaa cagctggaaa aagaataaaa aaacacccta ccggatttca
     4261 gctcttcgga gcactgccat attataacga ttgtaaacca aaaacacttt ttatgtcctc
     4321 tgagtacagt ttttttcaaa gtgtagaaaa gagctttgac aaagccgcca aattcacgaa
     4381 atgggaccca ggtattcttg agcaaatcaa agcctgtaac tctgtgtaca ggatgcgttt
     4441 ccccgttaag atggatgacg gccatattga agtaattgaa gcctaccgcg ttcaacacag
     4501 ccatcacaaa tctccctgca aaggaggtat ccgcttttcg atggaagtga accaggatga
     4561 ggtaatggca ctggccgccc tgatgaccta taagtgtgcc atcgtaaacg taccctttgg
     4621 tggtggcaaa ggcggtatca aagtaaaccc gcacaagtat tcggcttatg agctggaaaa
     4681 aatcacccgc cgcta
//
LOCUS       DATIQF010000582         1699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_282888,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000582 DATIQF010000000
VERSION     DATIQF010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1699
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282888"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..443)
                     /locus_tag="VLL95_09785"
     CDS             complement(<1..443)
                     /locus_tag="VLL95_09785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39191.1"
                     /translation="MQHWLLNARVFTGTEWLAQAHVCIEDDRIARISTQLPEALPGHF
                     DCKGMMLVPAFLDAQIYGGGSRLFAQYPEPESLALLAADNRHGGTAQCLVTIPTLPMH
                     SILNCLDGLNAYLDEGGDGIIGLHLEGPFIHPEKRGAHKLADIRQP"
     gene            554..886
                     /locus_tag="VLL95_09790"
     CDS             554..886
                     /locus_tag="VLL95_09790"
                     /inference="COORDINATES: protein motif:HMM:NF025178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HSR39192.1"
                     /translation="MEKQYRWFKVAESAAELFNTGRHIVQVKAAGREVCITRHQQELF
                     GCASKCPHAGGRMADGWVDPLGNVVCPLHRYKFKLSNGFNSSGEGYFLKTYPVKETDD
                     GLFVGFEL"
     gene            complement(883..1293)
                     /locus_tag="VLL95_09795"
     CDS             complement(883..1293)
                     /locus_tag="VLL95_09795"
                     /inference="COORDINATES: protein motif:HMM:NF014173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HSR39193.1"
                     /translation="MLSQKTKYALQALGYLAGRYGEGPVLIPLIAEEKGIPLRFLENI
                     LHELKQEGLLISHRGRNGGYELAKHPSRIKLATIIRLVEGPIAMLSCVSLHFYQPCEG
                     CNERHCGLKTVMAEARDAILGVLEKKTLADIIDR"
     gene            1399..>1699
                     /locus_tag="VLL95_09800"
     CDS             1399..>1699
                     /locus_tag="VLL95_09800"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HSR39194.1"
                     /translation="MSLRLGDIAPNFQADTTIGHIDFHEYLGNGWGILFSHPADYTPV
                     CTTELGRTAQLAEEFAKRNTKVLAVSVDDVSSHKSWIGDINETQHVNVQFPIIGDE"
BASE COUNT          408 a          453 c          437 g          401 t
ORIGIN      
        1 ggctgtcgta tgtcggccaa tttatgtgcc cctctttttt cgggatggat gaatggccct
       61 tccaggtgca gaccgatgat gccatcgcca ccttcgtcca agtaagcatt caagccatcc
      121 aggcagttca atattgaatg catgggcagc gtggggatgg tgaccaaaca ttgggcggtt
      181 ccgccgtgcc ggttgtcggc cgccagcagg gccaggcttt ccggctccgg gtactgggca
      241 aacaagcggc tgccgccacc atagatctgc gcatccaaaa aagcaggcac cagcatcatt
      301 cccttgcagt caaagtgccc gggcaaagcc tcaggcagtt gggtgctgat gcgggcaatg
      361 cggtcgtctt caatgcacac atgcgcctgt gccagccatt cggtcccggt aaacacccgt
      421 gcattcaata accagtgttg catgaacttc gaattgaata gtttttgttt ggggttgccg
      481 cagtggcaat ccatctgcag gcaaagcaaa gcaacatgcg gttgccacaa aatatatttc
      541 tttgggccgg catatggaaa aacaataccg ctggttcaaa gtagccgaaa gtgcggccga
      601 gctgttcaac actggtcgcc acattgtgca ggtaaaagca gcaggccgtg aggtttgcat
      661 tacccggcac cagcaggaac tgtttggctg tgccagcaag tgcccgcatg ccggtggccg
      721 catggccgat ggctgggtgg atccgttggg caacgtggta tgcccgctgc accgttacaa
      781 attcaaactc agcaacggct tcaacagcag tggcgaaggc tacttcctga aaacctatcc
      841 ggtaaaagaa acggatgacg gcctgtttgt aggctttgaa ctctagcgat cgatgatgtc
      901 ggccagggtc ttcttttcca gtacacccaa aatggcatcc cgggcttcgg ccattaccgt
      961 tttcaatccg caatgccttt cgttgcagcc ttcacaaggc tggtaaaaat gcaggctcac
     1021 acagctcagc atggcaatgg gaccttccac cagcctgatg atggtggcca gtttgatccg
     1081 cgaaggatgc tttgccagct cgtacccgcc attgcggccc cggtggctaa tgagcagtcc
     1141 ttcctgcttc agttcatgca atatgttttc caggaagcgc agcgggatcc ctttttcttc
     1201 tgcaataagc ggtatcaaaa ccgggccttc gccgtaccgg cctgccaggt aacccagcgc
     1261 ctgcagcgca tattttgttt tttgtgacag cataaaaatg aagtactacg aagctaaagt
     1321 taattctgtt tgcaattgtt cacttttctt gtgaactatt atctttacac tcctttcata
     1381 accgaaaaaa caagcaatat gagtttaaga ttaggcgata tcgcacccaa cttccaggcc
     1441 gacaccacca ttggtcacat tgattttcat gaatacctgg gcaatggctg gggcatcctt
     1501 ttcagccacc cggccgacta cactcctgtt tgcaccaccg agctgggccg tactgcacag
     1561 ctggcagaag aatttgccaa acgcaataca aaagtgctgg cagtgagcgt ggatgatgta
     1621 agcagccaca aaagctggat tggcgacatc aacgaaacac agcatgtgaa tgtgcagttc
     1681 cccattattg gcgatgaag
//
LOCUS       DATIQF010000583         4149 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_85403, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000583 DATIQF010000000
VERSION     DATIQF010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4149
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85403"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1121
                     /locus_tag="VLL95_09805"
     CDS             <1..1121
                     /locus_tag="VLL95_09805"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HSR39195.1"
                     /translation="HHSRKPQVEPGTIEDDQLRRDFTINALAISLNEKDYGTLIDPFG
                     GLQHLQEKIIITPQDPIKTFSDDPLRMMRAIRFASQLHFNIHPATLEAIKQDAHRISI
                     ISKERIADELNKIVLSSKPSIGLDLLYQTGLLEKFFPQMVALAGAEYIEGKGHKDNFH
                     HTLQVLDNICHHTNDLWLRWAAILHDIGKPPTKRFEEGHGWTFHGHEVVGGKMVPKIF
                     AQLKLPMNEKMKYVRKLVELHLRPISLTKENITDSAIRRLLFDAGDDFDDLMTLCEAD
                     ITSKNKFKVKRYLANFEMVRQRCSEVEEKDRIRNWQPPIDGDMIMQEFGLKPGREVGI
                     IKTAIKDAILDGVIENNYDSAYLFMIREAEKLNLRPIR"
     gene            1185..1754
                     /locus_tag="VLL95_09810"
     CDS             1185..1754
                     /locus_tag="VLL95_09810"
                     /inference="COORDINATES: protein motif:HMM:NF019542.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39196.1"
                     /translation="MAVLKFRIYLEEDESVYRDIVIKHTQNFLDLHKTILQAWEFDNK
                     HQATFYRSNDNWQRGREISLEKYDKEYKAPPLMMDETTIASEIRDTNQKFIYVYDFNK
                     NWVFLVELINVSKEESSKIIYPSVSRKEGVGPLQYGTRGLLGPKFAEMEEKYDLKGDE
                     EGFGEEGEEEGGSSDLFGTGAEESGGDDF"
     gene            1761..2678
                     /gene="miaA"
                     /locus_tag="VLL95_09815"
     CDS             1761..2678
                     /gene="miaA"
                     /locus_tag="VLL95_09815"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: protein motif:HMM:TIGR00174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HSR39197.1"
                     /translation="MASEKTLLVIAGPTASGKTALSIALAQHFRAPILSFDSRQCYRE
                     LNIGVAKPSPAELQAVPHYFIGTHSILEPVDAAGFEKYALETLEQLFQQHDTVVAVGG
                     TGLYMKVLCEGIDQMPEVPDSIRQSIRQQYEQEGLPWLQQAIRDEDPVYAADGEMQNP
                     HRLMRALEIKRASGQSIRHFQQFGKTTRPFRILKMGIDLPKPLLHERINQRVDDMMKA
                     GQLEEARQLLPYRHLQALQTVGYKELFDYFDGNCTLAEAIESIKTNTRQYAKRQMTWF
                     RKDKEITWLPDTQPAHYIACFYEQTGKIK"
     gene            complement(2671..>4149)
                     /locus_tag="VLL95_09820"
     CDS             complement(2671..>4149)
                     /locus_tag="VLL95_09820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39198.1"
                     /translation="FPLMGGTARNLAIGGAMGSLGGDITAAQINPAGIGLYKNKEFVL
                     SPGFNFYNNNFDYRTQQTQAKENAFGYGTSGFVFGSQHDRSRNASSSAFSISVNQLAN
                     YNNRIEYKGFNNFSSWSEQYVEELVRNRATIQQAENNFIFGSSLAFWTFLVDTIANAS
                     GNVIGYQSLVPLPLNGTGPEGVVQHNLIETSGGAHEVALSFGNSYNDKLHLGLGIGVP
                     IYSFNKNQTYREDDASGNTNNDFDFFEYKERYSTSGFGFNMKMGLIYRPAERWRLGLA
                     FHTPTWANLNDQISSSITTNTEQYTIYPQPATKSSDELRGNSNAGDYKYNLSTPYRAI
                     GSVSFVINEVKDIKQQKGFVTADIEYVNYRSVRYRADDPSNTDDVNYYNDLNAIIKER
                     FRPAFNLRLGGELKFKTIMGRAGFAYMGSPFANSELKGTRMLLSGGLGYRNAGMFIDL
                     TYQHALIQQSHVPYYLEDKPNPVADGRNSRGMVVLTVGFKFI"
BASE COUNT         1123 a         1083 c         1047 g          896 t
ORIGIN      
        1 gccaccacag ccgcaagcca caggtggagc ccggcaccat tgaagacgac cagctgcgcc
       61 gcgatttcac catcaatgca ctcgccatca gcctcaatga aaaagactat ggcacactga
      121 tagatccttt tggcggcctg cagcacctgc aggaaaagat catcatcacc ccacaggatc
      181 ccatcaaaac gttcagcgac gatcccctgc gcatgatgcg ggccattcgc ttcgcttctc
      241 aattacattt caacattcac cccgccacgc tggaggccat taagcaggat gcccaccgca
      301 tcagcatcat ttcgaaagaa cgcattgccg acgaactgaa caagatcgta ttgagcagca
      361 aaccctccat tggcctggac ctgctctacc aaaccgggct gctggaaaaa ttctttccgc
      421 agatggtggc actggccggg gcggaataca tcgaaggcaa aggacacaaa gacaatttcc
      481 accacacact gcaggtgctg gacaacattt gccaccatac caacgacctg tggttacgct
      541 gggcggctat tttgcacgac attggcaagc ctcccaccaa gcgctttgaa gaaggccatg
      601 gctggacctt tcatggccac gaagtggtgg gtggcaaaat ggtgccgaag atttttgcgc
      661 agctcaagct gcccatgaac gagaagatga agtatgtgcg caaactggtg gagctgcacc
      721 tgcgccctat ttcgcttacc aaagagaata ttaccgacag cgccatccgc cgcctgctat
      781 ttgatgccgg cgacgatttt gatgacctga tgacattgtg cgaagccgac atcacttcga
      841 aaaacaaatt caaggtgaag cgctacctgg ccaactttga aatggtgcgc cagcgctgct
      901 ctgaagtaga agaaaaggac cgcatccgca actggcagcc gcctatagat ggcgacatga
      961 tcatgcagga gtttggcctg aagcccggcc gcgaagtggg catcatcaaa accgccatca
     1021 aagatgccat cctcgatggc gtgattgaga acaactatga ctccgcctat ctcttcatga
     1081 tcagggaagc tgaaaagctg aacctccggc cgatacgcta aaaaatcttt tctttgtttt
     1141 gagaacaaaa cccggggcgt ccaagcgtcc ccatacacta catcatggca gtactcaaat
     1201 tcaggatcta cctcgaagaa gacgaaagcg tttaccgcga catcgtgatc aagcatacac
     1261 aaaacttcct cgacctgcat aagaccattt tgcaggcctg ggaattcgac aataagcacc
     1321 aggctacctt ctatcgcagc aacgacaact ggcagcgggg tcgtgaaatt tcgcttgaga
     1381 aatacgacaa ggaatacaag gcgccgccac tgatgatgga tgaaaccacc atcgcatcag
     1441 aaatccgcga caccaaccag aagttcattt acgtgtacga cttcaataag aactgggtat
     1501 tcctggtgga actcatcaac gtgagcaaag aagaaagcag caaaatcatt tacccttcgg
     1561 tgagccgcaa ggaaggcgtg gggccgttgc aatacggcac ccgcggtttg ctggggccca
     1621 agtttgccga aatggaagag aaatacgacc tcaaaggaga tgaagaaggc tttggtgaag
     1681 aaggagaaga agaaggcggc agcagtgact tgttcggcac cggcgctgaa gaaagcggcg
     1741 gggatgattt ctaaaaattg atggcatccg aaaaaacctt actggtaatt gccgggccga
     1801 cagcctccgg caaaacagcg ctcagcatag cactggccca acacttccgg gcccccattc
     1861 tttcattcga cagcaggcaa tgctaccggg aactgaacat tggcgtggcc aaaccttccc
     1921 ctgctgaatt gcaggcagtg ccgcattatt tcattggcac ccattccata ctggaacctg
     1981 tggatgcagc gggttttgaa aagtatgcgt tggaaacgct ggagcaactg tttcagcaac
     2041 acgacaccgt ggtggcggta ggtggtaccg gcctgtacat gaaagtgctg tgcgagggca
     2101 tcgatcaaat gcccgaagtg ccggacagca tccggcaaag catccggcag caatacgaac
     2161 aggaaggcct gccctggctg caacaagcca tacgcgatga ggaccccgtg tacgctgctg
     2221 acggcgagat gcaaaacccc caccgcctga tgcgtgccct ggaaatcaag agagccagcg
     2281 ggcagtccat ccgccatttt cagcaattcg gaaaaaccac gagaccgttt cgtatcctca
     2341 aaatgggcat cgacctgccg aaaccattgc tgcatgagcg catcaaccaa agggtggacg
     2401 acatgatgaa agccggccaa ttggaagaag cccggcaact actgccgtac cgtcacttgc
     2461 aggcattgca aacggtaggc tataaagaat tgttcgacta ttttgacggc aactgcacat
     2521 tggccgaagc aatagagagc atcaagacca acacgaggca atacgccaag cggcaaatga
     2581 catggttcag aaaggacaaa gaaattacct ggctgcccga tacgcaacct gcacattaca
     2641 ttgcctgctt ctacgagcaa acgggaaaga tcaaatgaat ttgaaaccaa cggtcagcac
     2701 caccatgccg cgggaatttc tgccatccgc taccgggttt ggtttgtctt caagataata
     2761 aggcacatgg ctttgctgga taagcgcatg ctggtacgta agatcaataa acataccggc
     2821 attgcgataa cccaagcctc cactcagcaa catgcgggtg cctttgagtt ctgaattggc
     2881 aaaggggctg cccatgtagg caaagcctgc cctgcccatg atggtcttga atttcaattc
     2941 accacccagg cgcaggttga aagcaggcct gaaacgttct ttgatgatgg cgttgaggtc
     3001 attgtaatag tttacatcat cggtattgga aggatcgtcg gcccggtagc gtacactgcg
     3061 gtaattcacg tattcgatat cggcagtcac aaatcctttc tgctgcttta tgtcttttac
     3121 ttcattgatc acgaacgaca cgctgcctat ggcacggtag ggagtggaca ggttgtactt
     3181 gtaatcgccg gcatttgaat ttcccctcag ttcatcgctg gatttggtag cgggctgcgg
     3241 gtaaatggtg tactgctcgg tattggtggt gatggaagaa gaaatctggt cattgagatt
     3301 ggcccaggta ggcgtatgga aagccaaccc caggcgccaa cgttcggcag ggcgatagat
     3361 caatcccatt ttcatattga agccgaagcc gctggtgcta tatctttcct tgtattcaaa
     3421 aaagtcaaaa tcattgttgg tattgccgct ggcatcgtct tcacggtagg tctggttttt
     3481 attaaaactg taaatcggaa caccgatacc caatcccaaa tgcagtttgt cgttgtagct
     3541 gttgccaaag gatagggcca cttcatgagc accgcccgat gtttcaatca ggttgtgctg
     3601 aacaacgcct tcgggccctg ttccattcaa agggagcggt accaaactct ggtagccaat
     3661 tacgttgccg gatgcattgg caatcgtatc caccaggaat gtccagaatg ccagtgagga
     3721 gccaaagatg aaattgtttt ctgcctgctg aatggtagcc ctgttccgca ccaactcctc
     3781 cacatactgc tcggaccaac tggagaaatt attgaagcct ttgtattcta tgcgattgtt
     3841 gtagttggcc agttgattca cgctgataga gaaagcggaa ctgctggcat tcctcgaacg
     3901 gtcgtgctgc gagccgaata caaaaccact ggtaccataa ccaaaagcat tttccttagc
     3961 ctgtgtttgc tgggtgcggt agtcaaaatt gttgttgtaa aaattgaacc cgggcgacaa
     4021 aacaaattcc ttgttcttgt acaaaccaat acccgctggg ttaatctgtg ccgctgtgat
     4081 gtcgccaccc agtgaaccca tagcgccacc gatggcgagg ttacgggcgg tgccgcccat
     4141 caacgggaa
//
LOCUS       DATIQF010000584         4044 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_39660, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000584 DATIQF010000000
VERSION     DATIQF010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4044
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39660"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..340)
                     /locus_tag="VLL95_09825"
     CDS             complement(<1..340)
                     /locus_tag="VLL95_09825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39199.1"
                     /translation="MAEDLQIIKGAKEEQYQALIPQIKGLLEGENNLVANMANVAAAL
                     KEQFGWWWVGFYLVDKNDELVLGPFQGPVACTRIKKGRGGCGTTWQKAETIIVPDVEQ
                     FPGPIACSSLS"
     gene            535..750
                     /locus_tag="VLL95_09830"
     CDS             535..750
                     /locus_tag="VLL95_09830"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR39200.1"
                     /translation="MRLKSLEIKGFKSFADKTVVNFDEGITGIIGPNGCGKSNIVDSI
                     RWVIGEQKISNLRSENLDSLVFNGSKS"
     gene            763..>4044
                     /gene="smc"
                     /locus_tag="VLL95_09835"
     CDS             763..>4044
                     /gene="smc"
                     /locus_tag="VLL95_09835"
                     /inference="COORDINATES: protein motif:HMM:TIGR02168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HSR39201.1"
                     /translation="MAEVSLTFENTRNLLPTEFSTVTITRRFYKNGESEYRLNDVQCR
                     LKDIQNMFLDTGVSTDSYAIIELGMVDDIIKDKDNSRRKMLEQAAGISIYKTRKKEAK
                     LKLDATEQDLARIEDLLFEINNQLKALENQAKKAEKYYEIKQDYREVSIELAKAALEG
                     FNIQYRELNEQQATETDKRVELEAQIATEETAIEADRLGFIEQERALQSMQQAFNQML
                     QNLRLKENDKNLAQQQLKFLAEKETSLKDFLQKSEGQLESLRDSVVYTSEQLELEKEQ
                     LAVLQQELDALKQSLDEKRQVYDERRAELDNTRSNLQALQRSQFDAEKQVAVADTSIA
                     NLQRSIAQLQDEQEMRKADIQKVEREKEQREEEERDKKQFLEQLRQQHEQTKEQILAG
                     QGELEKLRTQLMEENRKFDQKKNEFDLLKSLIDSMEGYPDSVKFLHNNPNWNFHSPIL
                     SDIIYVKEQYRAAVENVLEPYLNYYVVGDLAEGMKAVTLLDANQKGKANFFLLDEINA
                     FVENDRKHENTAHGLFLPGAIPAMDVIEVDARYRNLALHLLGNVFIAEDESVLKNSSG
                     HIVLEKSGKYVRGKYTLTGGSVGLFEGKKIGRAKNLEKLQKEIQSQSLVVDDLKQRIS
                     KKHAEVLGFNEQLKENAIRQTEQEIIQLTNAVFAAQNKRENLLASQQNAAARLESFQQ
                     QLEEQHEAIADVREKLEQLNIQLQELQVAIQTKEDFYKLAEAEYQQSAGQYNEGNINL
                     TRQQSKMASLEQELNFKQQQVFNLEKQIAESSTQLTQAADEMISNREVLELLQVELTE
                     LLQKKEADEKALNEADQAYYNHRNQLQERESELRHKVKAKENVDHLLNEIKDQLNNLK
                     LQLAGMKERLDVEFRINIEDVIDQPRTSETPQEELQAQVDRMKKRLENMGEVNPTAIE
                     AFQEMKKRYEFILEQKNDLVDAKESLLQTIQEVEATANQQFLDTFNQVRENFQRVFKA
                     LFTEEDTADLILENPENLAETGIDIVAKPKGKRPSSITQLSGGEKTLTATALLFAIYL
                     IKPAPFCILDEVDAPLDDANVGKFTNMIRQFSENSQFIIVTHNKQTMGAVDVIYGVTM
                     QEAGVS"
BASE COUNT         1235 a          934 c         1062 g          813 t
ORIGIN      
        1 tcgacaaact gctgcaggca atgggcccgg gaaactgctc cacgtcggga actatgattg
       61 tttcagcttt ttgccaggtg gtgccacacc cgccccgtcc ttttttgata cgggtgcagg
      121 ccacgggtcc ctggaagggg cccagcacca gttcatcgtt tttgtcaacc aggtaaaaac
      181 ctacccacca ccagccaaac tgttctttga gagccgcggc cacattggcc atattggcca
      241 ccaaattatt ctccccctcc agcaggcctt ttatctgcgg aatgagtgcc tggtactgtt
      301 cttccttcgc gccttttatt atctgcaaat cttctgccat gggataaaaa attaccggcg
      361 aaagtaggcc gattcccgct gtttttgctg tgagtaaaac gtgaataaaa tcgacgactt
      421 tcgccacttt gcgagcaatc tttaacggtg gcttcgggta tttttggcac ccttgtgccg
      481 gagccattcc gaccgggaat tgtggcatta gaatcataaa aaaaaggagc aactgtgcgt
      541 cttaagagtt tggaaatcaa aggtttcaag agttttgctg acaaaactgt ggtgaacttt
      601 gacgaaggca tcaccggcat cattggcccc aatggttgcg gcaagagcaa cattgtggac
      661 agcattcgct gggtgattgg agaacagaag atcagcaacc tccgcagcga aaacctcgac
      721 agcctggtgt tcaacggctc aaaatcgtga agcgccagtg gcctggccga agtgagcctc
      781 acctttgaga acacccgcaa tttgcttcct accgaattca gcacggttac catcacccgc
      841 cgcttttaca aaaacggtga aagcgaatac cgcctcaacg atgtacagtg cagattgaag
      901 gatattcaaa acatgttcct cgacaccggc gtgagcactg atagctacgc catcatcgaa
      961 ctgggcatgg tggatgacat catcaaagac aaggacaaca gccgtagaaa aatgctggag
     1021 caggcggccg gcatttccat ttacaaaacg aggaagaagg aagccaaact gaaactggat
     1081 gccaccgagc aggacctcgc aaggattgag gatctcctgt ttgagatcaa caaccagttg
     1141 aaggctttgg aaaaccaggc gaagaaggct gagaaatatt acgagatcaa acaggattac
     1201 cgggaagtaa gcattgaact ggccaaggcg gctctcgaag gattcaacat ccagtaccgc
     1261 gagttgaatg aacagcaggc tactgaaacc gataagcggg tagaactgga agcgcagatt
     1321 gccactgaag aaacggccat tgaagcagac cggcttggat ttattgaaca ggagcgtgcc
     1381 ttgcaaagca tgcagcaggc attcaaccaa atgctgcaaa acctgcgcct gaaagagaat
     1441 gacaaaaacc tggcgcagca acaattgaaa ttcctggcag aaaaggaaac cagcctcaaa
     1501 gactttttgc aaaagagcga aggccaactg gaaagcctgc gtgacagcgt ggtgtacacc
     1561 agcgagcagc tggaattgga aaaagaacag ctggcagttt tacaacaaga actggatgcc
     1621 ctgaaacaat cgctggatga aaagcgccag gtgtatgatg agcgtcgtgc ggaattggat
     1681 aacacccgca gcaacctgca ggctttgcag cgcagccagt ttgatgctga aaagcaagtg
     1741 gctgtagccg ataccagtat tgctaacctg caacgcagta ttgcgcaatt gcaggacgag
     1801 caggaaatgc gaaaggccga tattcaaaag gtagaaagag agaaagagca acgcgaagaa
     1861 gaagagcggg ataagaaaca attcctggaa caactgcgcc agcagcacga gcaaaccaaa
     1921 gagcagatac tggctggcca gggcgaattg gaaaaattgc gcacccagtt gatggaggaa
     1981 aacaggaagt tcgatcagaa gaagaatgaa ttcgacctgt tgaagagcct catcgacagc
     2041 atggagggtt atcctgattc ggtgaagttt ttgcacaaca accccaactg gaattttcat
     2101 tcacccatcc tcagcgatat catttacgta aaagaacaat atcgtgccgc tgttgaaaat
     2161 gtgctggagc catacctcaa ctactatgtg gtgggagatc ttgctgaagg catgaaagcg
     2221 gtgactttgc tggacgccaa ccaaaaaggg aaggctaact ttttcctgct cgatgagatc
     2281 aacgcatttg ttgaaaatga tcgcaagcat gaaaacacag cccatggctt gttcttgccg
     2341 ggtgccattc ctgccatgga tgtgatagaa gtggatgccc gctaccgcaa cctggcgctg
     2401 catttgttgg gcaatgtttt cattgcggaa gacgaatcgg tgcttaaaaa cagcagcggc
     2461 cacatcgttt tggaaaagag tggtaagtac gtgagaggaa aatatacgct taccggtggc
     2521 agtgtgggct tgttcgaagg gaagaaaatt ggccgtgcca agaatttgga aaaactgcaa
     2581 aaggaaatcc aaagccagtc gctggtagtg gatgacttga aacagcgcat cagcaagaag
     2641 cacgccgaag tattgggctt taatgagcag ttgaaagaaa atgccatccg tcaaacagag
     2701 caggagatca tccagttgac caacgcagtg tttgcggcgc aaaacaaacg ggagaacctg
     2761 ctggcttctc aacaaaacgc ggctgcaaga ctggagagct ttcagcaaca actggaagag
     2821 cagcatgaag ccattgccga tgtaagagaa aaactggaac agctgaatat tcaacttcag
     2881 gagttgcaag tggccattca aaccaaggaa gatttttaca agctggcaga agcggagtac
     2941 cagcagtcgg ccgggcaata caacgaaggc aacatcaacc ttacccgcca gcaaagcaaa
     3001 atggcatcgc tggaacagga gctgaatttc aaacagcagc aggtgttcaa cctggaaaag
     3061 caaattgcgg aaagctcaac gcagctgacg caggcggcag acgaaatgat ctccaaccgg
     3121 gaagtgctcg aactgttgca ggtagaattg actgaattgc tgcaaaagaa agaggctgat
     3181 gaaaaagcac tgaacgaagc tgaccaggcc tactacaatc accgcaacca attgcaggaa
     3241 cgggagagcg aattgcgcca caaagtgaag gctaaagaaa atgttgatca cctgctcaac
     3301 gagatcaagg atcagctgaa caacctgaag ctgcagctgg ccggcatgaa ggaaagactg
     3361 gatgtggagt tccgcatcaa tattgaagat gtgattgacc agccacgtac ttctgaaacg
     3421 ccccaggaag aactgcaggc gcaggtggac cgcatgaaga agcgtttgga aaacatgggt
     3481 gaagtaaacc ccactgctat tgaagccttc caggaaatga agaagcgata cgagtttatt
     3541 ctcgaacaaa agaatgacct ggtagatgcc aaagaaagtt tgctgcaaac catacaggaa
     3601 gtagaagcca ctgccaacca gcagttcctc gatactttca accaggtgcg tgaaaatttc
     3661 cagcgggtat ttaaggcgtt gtttaccgaa gaggatactg ccgacctgat tttggaaaac
     3721 ccggagaacc ttgcggaaac cggtattgat attgtggcca agcccaaagg caaacgccca
     3781 tcgagcatca cgcagttgag cggtggagaa aagacattaa cggcaacggc cttgttgttt
     3841 gccatctatc tcatcaagcc ggcacctttc tgtatcctcg atgaagtgga tgcgccgctg
     3901 gatgatgcca acgtgggaaa gttcaccaat atgatccgcc agttcagcga gaacagccag
     3961 ttcatcattg ttacccacaa caagcaaacc atgggtgccg tggatgtgat ctatggagtg
     4021 acgatgcagg aggccggcgt gagc
//
LOCUS       DATIQF010000585         4441 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_100543,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000585 DATIQF010000000
VERSION     DATIQF010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4441)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4441)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4441
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100543"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..520)
                     /locus_tag="VLL95_09840"
     CDS             complement(<1..520)
                     /locus_tag="VLL95_09840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39202.1"
                     /translation="MRKQLPLLAAAFFSFLISTQVFAQLSLTNSPYQQSFDGIGSGLP
                     TGWEVRTGATASALGTSATPVTTATAWNSTSGNFRNVASANGLVSTSTSTEQNNSTNR
                     ALAVRQTSSFGDPGAAFYLQLQNTASKTGFKLSFQLQSLDVSSPRTSTWTVQYGVGAS
                     PGSFTTAQSITGT"
     gene            complement(674..2125)
                     /locus_tag="VLL95_09845"
     CDS             complement(674..2125)
                     /locus_tag="VLL95_09845"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: protein motif:HMM:NF006673.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HSR39203.1"
                     /translation="MKIAVAKGDGIGPEIMDAVLGLFNTAGVPLEYEFVEMGKWVFDK
                     GYSNGMTPEAQQTIESLGILFKGPMETPKGKGVKSVNVTARKTWNTYANKRVFQTLHG
                     VDTVFSKAGIPIDVTVVRENIEDTYGGIEHMLTHDVALSRRFITRPGSAQVIRYAFEM
                     AKKKGARRITCGHKANIMKITDGLFLEIFYEVAKEYPDLKADDVIVDDLCMKMVTRPD
                     LFDVVVLTNLQGDIVSDLCAGLVGGLGFAPSANIGDHICIFEAVHGTAPDIAGKNIAN
                     PTALLLSGITMLRHLGLMEQASIIENALLYTLESGVHTGDFGDKSIPSVNTTEFTNAI
                     IANLGKTPAHGAKPVIPNLPVTPTHFKLEKNPMLVSEEMAGEQIVGVDLFIESAEQPL
                     EVANKLLEHTGDLFKLVTISNRGTQVWPKGSVFTNLINQYRCRFESLEEAPLTQVDIL
                     ELYKKVMVDFKVCSLELLNMWDGKKAYSLAQGQ"
     gene            2311..2697
                     /gene="apaG"
                     /locus_tag="VLL95_09850"
     CDS             2311..2697
                     /gene="apaG"
                     /locus_tag="VLL95_09850"
                     /inference="COORDINATES: protein motif:HMM:NF003967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Co2+/Mg2+ efflux protein ApaG"
                     /protein_id="HSR39204.1"
                     /translation="MQSLTTQGVEITVETFYQPDFSNPVQQEFMFAYRITLENHNSFA
                     VQLLRRHWDIFDTIGEYREVDGDGVIGQQPVLTPGESFQYVSGCNLKSEMGKMWGYYF
                     MASLLDHKEFRVEIPAFDLIAPMKGN"
     gene            complement(2745..3788)
                     /locus_tag="VLL95_09855"
     CDS             complement(2745..3788)
                     /locus_tag="VLL95_09855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39205.1"
                     /translation="MFRQLIIPALFLSSLLSCKSGEEVPDVSNLDATTVVQRFDRDFF
                     AMDTTRLPEALAQLRQKYPGFTDQYLGFVLGIDPRNPQALEAVRAFLESYQVVYTAGN
                     AVVEKHLPETEKQIQLGIKLMQHYFPQWKPEKPFAITTFVGPMDAYEPFAIGDYGDVR
                     TPAGVGIAMQLHLGADAPVYEAGRQSGALYDYQTRRFTPEMMAVNAMKSIIEDAFPYN
                     ASGQSLVEEMVEKGKRLYVLKKLMPEVPDSLQLGYTGKQLQGCEANEALIWNFFVKND
                     LLYSKEPLVNQNYIKDGPKTQELGEGAPGYIGLFVGRKIVEAFMEKNSGTTLEALMKM
                     PAKEIFEKAGYKP"
     gene            complement(3851..>4441)
                     /locus_tag="VLL95_09860"
     CDS             complement(3851..>4441)
                     /locus_tag="VLL95_09860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39206.1"
                     /translation="VGRPLPGVQSRISPEGEIQTKCAGLLKGYYNEPGLTAELFTEDG
                     FLRTGDIGEYDSEGFLTITGRLKDQFKTDKGKYIAPGPIELELLAHPYIDQVCVVGMG
                     IPQPIALTILAAETTQGVDKHAIEKSLVTAVAKLNPSLQSYERIEKVVILPEPWTVEN
                     GLMTPTLKVKRNELEKRYLGRYPEWYHQSGEVVWVQ"
BASE COUNT         1018 a         1190 c         1134 g         1099 t
ORIGIN      
        1 atgtacctgt gatggattgg gcagtggtaa aagaaccggg actggcgcca accccatact
       61 gaactgtcca ggtagaagtt cggggggaag aaacatcaag actctgcaat tgaaaactca
      121 acttgaaccc ggttttggat gccgtgtttt gcaactgcag gtaaaaggca gcacccggat
      181 cgccaaacga actggtttga cgcacagcca aagcccggtt ggtgctgttg ttttgctctg
      241 tgctggtgct ggtgctcacg agcccgttgg cactggccac attgcgaaag ttgccgctgg
      301 tgctgttcca ggcggtggcc gtggtcaccg gggtagcact ggtgcccaat gccgaagcag
      361 tggcgccggt acgcacctcc cacccggtgg gaaggccgct gccaatgcca tcaaaacttt
      421 gctggtacgg cgaattggtc aggctgagtt gtgcgaaaac ctgggtggaa atcaaaaaag
      481 aaaaaaatgc tgctgccagc aggggtagct gttttctcat aatcacgatt tgcataaaaa
      541 agtgctgcaa agaaacctgc taatcatgaa taaattgttg ccctggtgat tctgtgcaaa
      601 acagtacgat aagaggcaaa aaaatagccg ctgcatggca acggctgtct tttttcgcaa
      661 aagaaaattt gttttactgc ccctgggcca ggctgtaggc tttcttgcca tcccacatgt
      721 tcagcagttc cagcgagcat actttgaaat ctaccattac tttcttgtac agttccagga
      781 tatccacctg cgtaagcggc gcttcttcca agctttcgaa acggcagcgg tattggttga
      841 tgaggttggt gaagacgctg cctttgggcc atacctgcgt gccgcggttg ctgatggtaa
      901 ccaatttgaa aagatcgccg gtgtgctcca gcaatttgtt ggccacttcc aatggttgtt
      961 cggcgctttc aatgaacagg tcaaccccta caatttgttc accggccatt tcttcgctca
     1021 cgagcatggg gttcttttcc aacttgaaat gggtgggcgt caccggcagg ttgggaatta
     1081 ccggtttggc accatgtgca ggagtcttac ccaggttggc tatgatggca ttggtaaact
     1141 cagtggtgtt tacactgggg atgcttttgt cgccaaagtc gccggtatgc acgccgcttt
     1201 ccaacgtgta cagcaaagca ttttcaataa tcgaagcctg ttccatcaaa cccaggtgac
     1261 gcagcatggt aatgccactc agcaacagag ctgtggggtt ggcgatattc ttgccggcga
     1321 tatcaggcgc agtgccgtgt accgcctcaa aaatgcaaat gtggtcgccg atgttggcgc
     1381 tgggcgcaaa acccaaaccg cccaccaggc cggcacagag gtcgctcaca atatcgccct
     1441 gcaagttggt gagtaccacc acatcaaaca ggtcggggcg ggtcaccatt ttcatgcaca
     1501 ggtcgtctac aatcacatca tcggccttca ggtcggggta ttctttggcc acttcgtaaa
     1561 agatctccag gaacaagcca tcagtgatct tcatgatatt ggctttgtgg ccgcaggtaa
     1621 tgcggcgggc gcctttcttt ttggccattt caaaagcata cctgatcacc tgcgcactac
     1681 cggggcgggt aatgaaacga cggctgaggg ccacatcatg tgtcagcatg tgctcaatgc
     1741 cgccataagt atcctcaatg ttttcgcgaa ccacggtcac gtcaatgggg atgcccgctt
     1801 tggagaaaac ggtatccacg ccgtggagcg tttggaatac ccgcttgttg gcataggtgt
     1861 tccaggtttt acgggccgtt acgttcacac ttttcacccc tttgcccttg ggcgtttcca
     1921 tggggccctt gaacaaaatg cccaggcttt cgattgtttg ctgtgcctcc ggggtcatgc
     1981 cgttgctgta gcccttgtcg aatacccact tacccatttc cacaaactcg tattccaggg
     2041 gtacaccggc tgtattgaac aagcccaata cggcatccat aatttccgga ccgatcccat
     2101 ctcctttggc aacagcaatt ttcatacaat tgaattttgt aaaagtggta cagcaagcct
     2161 gctgtaaaat cgccgcaaaa gtaaggggca gcaaggcacc atcaagttaa attgcagtcg
     2221 ttctataacc ctttgttata cctcgctgca actttttaag ggcccatccg ttttttattt
     2281 agtttagaca tccataatca tcattcctgt atgcaatcgc tcaccaccca gggagtagaa
     2341 ataacggtag aaaccttcta ccagccggat ttcagcaacc cggtgcagca ggaattcatg
     2401 tttgcctacc gcatcacgct ggagaaccac aacagctttg ccgtgcaatt gctgcgccgc
     2461 cattgggaca ttttcgacac cataggcgaa taccgcgaag tggacggcga tggcgtgata
     2521 ggccagcaac cagtgctcac ccccggcgaa tcattccagt atgtgagcgg ctgcaacctt
     2581 aaaagcgaaa tgggcaaaat gtgggggtac tacttcatgg ccagcctgct cgaccacaaa
     2641 gagtttcgtg tagaaatccc ggcttttgat ctcattgccc cgatgaaggg gaattaggaa
     2701 ataccgacaa cagacaactg acaaccgaca acggacaacc aatttcaggg cttataccct
     2761 gccttttcaa aaatttcctt cgccggcatt ttcatcaatg cctccagcgt agtgccgctg
     2821 ttcttttcca taaaggcctc cacgattttg cggcctacaa acagcccgat atagccgggg
     2881 gcgccttcgc ccaactcttg ggttttgggc ccgtctttga tgtagttctg gtttaccagc
     2941 ggctctttgc tgtacaacag gtcgttcttc acaaagaaat tccagatgag tgcttcattg
     3001 gcttcgcagc cctgcaattg cttgccggta tagcccaact gcaaactgtc cggcacctcc
     3061 ggcatcagtt ttttcagcac atacaaacgc ttgcctttct ccaccatctc ttccaccagt
     3121 gattgccccg acgcgttgta gggaaaagca tcttcaatga tgctcttcat ggcattcacc
     3181 gccatcattt caggggtgaa ccgacgggtt tgataatcgt acagggctcc cgattgcctg
     3241 cccgcttcat acaccggcgc atcagcaccc aggtgcaact gcatggcaat gcctacgcct
     3301 gcaggggtgc gcacatcgcc gtagtcgcca atggcaaagg gctcgtaagc atccataggc
     3361 ccgacaaatg tggtaatggc aaaaggcttt tcaggtttcc actgcgggaa ataatgctgc
     3421 atcagcttga tgcccagttg tatctgcttt tccgtttcgg gcaggtgctt ttccaccacc
     3481 gcattcccgg ccgtgtatac tacctggtaa ctttccaaaa aagcccttac ggcttccaaa
     3541 gcctgcggat ttcgcggatc aatgcccagc acaaatccca gatactgatc ggtgaagccg
     3601 ggatattttt gtcgcaattg ggcaagcgcc tcgggcaggc gggtggtatc catggcaaag
     3661 aaatccctat cgaaacgctg caccaccgtg gtggcgtcca ggttcgaaac atcaggaact
     3721 tcttctccgg atttacagga aagcagggaa cttaggaaca gcgcagggat aatgagttgg
     3781 cgaaacatgc cacaaaaaac gtgtttcggc cgcacaatcg tatccaaaca ttttcccaat
     3841 tccatcggca ttactgcacc cataccactt cgcccgactg gtggtaccat tcggggtagc
     3901 ggcccaggta gcgcttctcc agttcgttgc gcttcacttt gagggtgggc gtcatcagcc
     3961 cgttctccac cgtccatggt tcgggtagta tcaccacttt ttcgatgcgt tcatacgact
     4021 gaagtgatgg attgagtttg gccactgccg ttaccaggct tttttcaatg gcgtgcttgt
     4081 ccacgccctg cgtggtttca gcggcaagga tggtgagggc gatgggctgc ggaatgccca
     4141 tgcccaccac gcaaacctgg tcgatatacg gatgtgccag cagttccagt tcaatggggc
     4201 cgggtgcgat gtatttgcct ttgtcggtct tgaactggtc cttcaggcga ccagtgatgg
     4261 tgaggaatcc ttcgctgtcg tactcgccga tgtcgccggt acgcaggaac ccgtcttcgg
     4321 taaacaattc ggcggtcagg cccggctcgt tgtaatagcc tttcagcagg ccggcgcatt
     4381 tggtttgaat ttcaccctcg ggcgaaatgc gtgattgcac acccggcaag ggcctgccta
     4441 c
//
LOCUS       DATIQF010000586         5825 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_237750,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000586 DATIQF010000000
VERSION     DATIQF010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5825
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237750"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VLL95_09865"
     CDS             <1..240
                     /locus_tag="VLL95_09865"
                     /inference="COORDINATES: protein motif:HMM:NF017847.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF933 domain-containing protein"
                     /protein_id="HSR39207.1"
                     /translation="AGEKEVRAWTIHEGWKAPQAASVIHTDFEKGFIKAEVIAYDDFV
                     KHGSEAACRDNGRLRIEGKEYLVKDGDIMHFRFNV"
     gene            complement(230..991)
                     /locus_tag="VLL95_09870"
                     /pseudo
     CDS             complement(230..991)
                     /locus_tag="VLL95_09870"
                     /inference="COORDINATES: protein motif:HMM:NF039343.3"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_process: GO:0045227 - capsule polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CpsB/CapC family capsule biosynthesis tyrosine
                     phosphatase"
     gene            complement(1046..3022)
                     /locus_tag="VLL95_09875"
     CDS             complement(1046..3022)
                     /locus_tag="VLL95_09875"
                     /inference="COORDINATES: protein motif:HMM:NF014740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate sugar
                     epimerase/dehydratase"
                     /protein_id="HSR39208.1"
                     /translation="MLARRFTSYLLKHPVAPKWMVFLFDTSIGLVSLLVAYLLRFNLD
                     VNAIYTFGIMDDIILVGITNCLFFFIFKTYQGIIRFSGFAEAIRTTTALFGAFLLLML
                     VNGGMVFLGKPTVIPTSILIINLLTGSFFIVGYRLLVKKWYRSSLSAGQRKNVLIYGG
                     ELNGSQLKTTIEQSNNQEFQVIAFIDDDPAYVGKTIDNTRIFSFDQIKPLVKSWDVGM
                     ILFAKPELDSAVKNHIVDYCLENNIQVRNIPPFDQWIKGQLSIAQLKEIKIEELLGRP
                     QIQIGDQHVNDMLSSKRILITGAAGSIGSELARQITSINPSLVILCDQNETGLYELEY
                     ELRNNFPACDSISLFIGDVRDESAMECLFKRFRPEVVFHAAAYKHVPMMEYHPSEAVR
                     NNVLGTKVLADLSIEYEVERFLLVSTDKAINPTNVMGASKRIAEIYVQSLGNREKKVV
                     HLNGSGMQELSGKSKGTKFITTRFGNVLGSNGSVIPRFKEQISSGGPVTVTHPDIIRF
                     FMTIPEACSLMLEAVTMGNGGEVFLFDMGEPVKIFDLARKMIKLAGFVPGKDIEIKFT
                     GLRPGEKLYEELLNKKEEVIPTHHKKILVAKTVEYDFYAVNKSIDVLLQESFQSNDEN
                     VVRQMKRIVPEYISKNSIYQSFDEMTQQEAVAAN"
     gene            complement(3191..4087)
                     /locus_tag="VLL95_09880"
     CDS             complement(3191..4087)
                     /locus_tag="VLL95_09880"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HSR39209.1"
                     /translation="MKTLLKATLAVGAVAVLAACGNYDYKKTKSGVMYKIVSRGTQPV
                     KPGQWLKVHYKGSIGDSIMFDTYNAMPAFGMYDTSAKDIHDFLDFLGEMKVGDSAVFV
                     RSVDSLQKKGYLMYNDVFKKGSTIKGYITILKVYPNRDAMQKDQQAEADKLRAAQTAA
                     LEEFLKKEKVTGYIKTPKGAFVKVETEGTGLKADSGSSVTVNYTGRLKNGNAFDSNVD
                     SAFGHVQPFEFIVGTGSVIEGWDDGIRYFREGGKGKIYVPSMLGYGGNAQGEKLPAYS
                     DLIFDIQIIQVKPQGAAPLPQQ"
     gene            complement(4117..5127)
                     /locus_tag="VLL95_09885"
     CDS             complement(4117..5127)
                     /locus_tag="VLL95_09885"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HSR39210.1"
                     /translation="MKAIDAFFPLLQGDRARVVITTHQKPDGDAMGSSLALKHYLDKL
                     GHECVVISPTNWAGFLNWMPGCGSVIDFEAKTKLAEEKLAEADWIFCLDFNRLNRVKR
                     MEPLVASSRAIKILIDHHQDPESEVFHYGISNTSKCSTAEMVFDFIVGSGGQDLVDEA
                     IGECFYAGVMTDTGSFRFPSTTASAHRMIAALKDKGLQHHLVHDHIFDNYLENRLRFI
                     GHVLLNRMDVIYELNTVLLAVPKSDIHQFDITTGDTEGLVNYPFSIQGIKMVAIVIDR
                     DEERKWSFRSKGDVDVNEFAKKHFSGGGHRNAAGGRSLDSFENTVKHFYNVIHELEPV
                     LQ"
     gene            complement(5242..5760)
                     /locus_tag="VLL95_09890"
     CDS             complement(5242..5760)
                     /locus_tag="VLL95_09890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39211.1"
                     /translation="MGVFTNSLSLAEAMLLVPGSMGQIYYTQAVGESKKAGQRGSGFL
                     RLLAINVALMLAICFLIQLFPGNLYTWIFGPQFEGVKSFLVVLAFGSLFYSIYLLTSY
                     WHSAVGKFKNNLLAGLGGLIINGLGVLFLQITKQLTLPNVALLTVIASFTISALAIIL
                     YRKERLVLQAIT"
BASE COUNT         1531 a         1407 c         1312 g         1575 t
ORIGIN      
        1 gccggtgaaa aggaagtgcg tgcctggaca atacatgaag gttggaaggc cccccaggct
       61 gccagtgtta tccataccga ttttgaaaaa ggattcatca aggccgaggt aattgcctat
      121 gatgattttg tgaagcatgg ctccgaagcc gcatgtcgcg ataacggacg tctccgcatt
      181 gaaggcaaag aatacctggt aaaagacggg gacatcatgc acttccggtt caatgtgtag
      241 cctgtagtaa actgggattt ttcaggtctt ttatcttgtc gatccaactg agggcctttg
      301 cattgttggc caattgccgc agagcgtcca ggtgcctggt atggtgcata tcggtgccca
      361 cccatgagat aaggttttga gcgatcagct tttcggccac cttttgaatc ggctttccgt
      421 agtagccttg caacgacagc aaattgatct gcaagtcggc gcctgcatcc actatttctt
      481 cgtactggct gaaccgtgaa aacaagtagg gatacctttc gggatgcgcc aaaatgggcc
      541 gttacccttt ggtttgaaga ctgaatataa cctccctcag gttgggagat tcaatggcat
      601 agctcatttc aatcagcaca taatcgcccg gcatgggcac cagttgcgcc gcttcaatga
      661 tgtcgttgaa ttcataatcg gtcatgtatt ctgccgaagc atgtaattca atggaatggc
      721 ctgccgcggc cagtgcggca gtcagtgttt cttttgcttt ggatatgctc tcgggcgtat
      781 tgggatgcac agagcccaac acgtggggtg tacaaacgaa ggatccgaaa cctaactcct
      841 gcaggccttc taccaataca attgaagttt caggattggg gctgccatca tcaatacctg
      901 gcaacaggtg attatggatg tcggtgccga caaatgaaaa aaccggtgca ttcttgccgg
      961 ttttgggtgt acgcttaaaa aatgaaaaca tgcttccgcc tcattcaatc atgaggcacg
     1021 aaagtaggca aaccatacca ttcttttagt tggcggctac agcctcttgc tgggtcattt
     1081 cgtcaaaaga ctggtaaatc gagtttttgc tgatgtattc aggcacgatc cgtttcattt
     1141 ggcgcaccac attttcatca ttgctctgga atgattcctg cagcagtaca tcgatagatt
     1201 tattgactgc atagaaatcg tattccactg ttttggccac caggattttc ttgtggtggg
     1261 taggtattac ttcttccttc ttattcagca gctcttcata aagcttttcg ccagggcgaa
     1321 gaccggtgaa cttgatctca atatccttgc cgggtacaaa gcctgccagt ttgatcattt
     1381 tacgagccag gtcaaagatc ttgacaggct ctcccatatc aaacaagaac acttcgccac
     1441 cattgcccat ggtcaccgct tccagcatga gagagcaggc ttcggggatg gtcatgaaaa
     1501 agcgaatgat gtcggggtgg gtaaccgtaa cagggccccc gcttgaaatt tgttctttga
     1561 aacgaggaat aacagaccca ttggagccaa gcacattacc aaaacgagtg gtaataaact
     1621 tggtgccttt tgacttgccc gaaagttcct gcattcctga accgttcaaa tgaaccacct
     1681 ttttttcgcg gttgcccaaa gactgaacat atatttcagc gatgcgcttg cttgcgccca
     1741 tcacgttggt ggggttgatc gccttgtctg ttgaaaccaa gaggaagcgt tccacttcgt
     1801 attcaatgga caaatcggcc aatactttgg tgcccaacac gttgtttcgc actgcttccg
     1861 aaggatgata ctccatcatt ggaacgtgct tataggccgc cgcatggaaa actacttcag
     1921 gcctgaatct tttgaaaagg cattccatcg cactttcatc ccttacatcg ccgatgaaaa
     1981 gtgatatgct gtcgcaagcc gggaaattgt tgcgcaattc atactcaagt tcatacagcc
     2041 cggtttcatt ctgatcgcaa aggatgacca gcgaaggatt gatggatgtg atctgtcggg
     2101 ccaattcgct gccaatagaa cccgcggccc cggtgatcag gattcgcttg gaagaaagca
     2161 tgtcatttac atgctgatcg ccaatttgga tctggggtct ccccaacaac tcctcaatct
     2221 tgatttcttt taattgggca attgacaact gtcctttgat ccattggtcg aaaggaggaa
     2281 tgtttcgaac ctggatattg ttttcaagac agtagtcaac aatgtggttt ttaacagccg
     2341 aatccaattc tggcttggca aacaaaatca ttcccacatc ccaacttttt accaggggct
     2401 ttatttgatc aaaactgaag atgcgggtat tgtcgattgt ttttccaaca taggcagggt
     2461 catcgtcaat gaaggcaatt acctggaact cctggttatt tgactgctca atagttgttt
     2521 tcagctggga accattcagt tcaccaccat aaatcagcac gttctttctt tgcccggcac
     2581 tcaggctgct cctgtaccat ttttttacca gcaaccggta gcctacaata aagaaggaac
     2641 ccgtgagcag gttaatgatc agtatagatg tgggaataac agtaggctta cccaaaaaga
     2701 ccattcctcc gtttaccaac atcaacaaga gaaacgcgcc aaacaatgca gtggtggttc
     2761 tgatcgcttc ggcaaaaccg gagaagcgaa tgatgccctg gtacgttttg aaaatgaaga
     2821 aaaaaaggca gttggtaatg cctaccagga tgatgtcgtc catgatcccg aatgtgtaaa
     2881 tagcattaac atcgagattg aatcggagca aataggcaac cagaagagag acaaggccaa
     2941 tggatgtatc gaacaaaaac accatccatt tgggtgcaac agggtgctta aggaggtagg
     3001 acgtgaatct tctcgctagc atgttattgt ttaggtatca tggtgtgaaa tctctctgca
     3061 caaacctttt cggcgtcaaa tgtaggtttc aacctgctca tttccaatat ttttacccat
     3121 tatttaaaat tcttactaat caatattggg agctaaaaaa gtctggaaac acggcttgtg
     3181 aacaggatgc ttactgctgc ggcagtggag ccgccccctg tggctttacc tggataattt
     3241 gaatgtcaaa aatcaagtcg ctgtatgcag gcaatttttc gccctgggca ttcccaccat
     3301 agcccagcat gctggggacg taaatttttc ctttcccgcc ttcgcggaaa tagcggattc
     3361 cgtcatccca gccttctatt actgaaccgg tgcccacaat aaactcaaac ggctgcacat
     3421 gaccgaaggc cgaatcaaca ttcgaatcga acgcattgcc atttttgagc ctgcctgtat
     3481 aattaaccgt taccgaactc ccgctatcgg ccttcaaacc tgtaccctcc gtttcgacct
     3541 tcacaaatgc acccttgggt gttttaatgt atccggttac tttttctttc ttcaaaaact
     3601 cctctaatgc tgccgtttgt gcggccctga gtttatcggc ttctgcctgc tggtcctttt
     3661 gcatggcatc acggttggga tatactttca aaatggtgat gtaccccttg atggttgagc
     3721 ctttcttgaa cacatcgttg tacataaggt agcccttctt ctgcaggcta tcgaccgagc
     3781 gtacgaaaac agcagaatca cccactttca tttcgccgag gaaatcaagg aaatcgtgta
     3841 tgtctttggc tgatgtgtcg tacatgccaa aagctggcat agcattgtat gtatcaaaca
     3901 tgatactatc ccctatggac cctttgtaat gcactttcaa ccactgccct ggtttcacag
     3961 gctgtgtgcc ccgggacact atcttgtaca tcaccccact tttggttttc ttatagtcat
     4021 agttgccaca ggcggctaaa acagcaacgg caccaacggc cagggtagct ttcaataatg
     4081 ttttcatatg cgtttcaggt tcttattgtt atttgtttat tgtaaaacgg gctccagctc
     4141 gtgaatcaca ttgtaaaaat gcttcacggt attttcgaag ctgtccagcg acctgcctcc
     4201 ggcggcattg cggtggcctc cgccactaaa atgtttttta gcgaactcat tcacatccac
     4261 atcgcccttg cttcggaatg accatttgcg ctcctcatcc ctgtcgataa cgatggccac
     4321 cattttgatg ccctgaatgc tgaaaggata attcaccaac ccttcagtat cgccggtggt
     4381 aatgtcgaac tggtgtatgt ctgatttggg aacagccagc agtacagtgt tcaattcgta
     4441 aatgacatcc atcctgttca gcaaaacatg ccctatgaag cgcaacctgt tttccaggta
     4501 gttgtcaaaa atgtgatcgt gcaccaggtg gtgctgcaga cctttatcct tgagagcagc
     4561 tatcattcgg tgggccgagg ccgtagtgga agggaatcta aaggaacctg tatcggtcat
     4621 gacaccagcg taaaaacatt cgcctatggc ttcatccacc aggtcttgtc cgccagaacc
     4681 gacaatgaaa tcgaaaacca tttcggcggt ggagcatttg gaagtattgc tgatgccgta
     4741 atgaaatacc tcagactccg ggtcctggtg atgatcaatc aaaatcttta tggcccggct
     4801 ggaagccacc aaaggctcca tccttttcac cctgttcaac cggttgaaat cgaggcagaa
     4861 tatccaatca gcttcggcca gcttttcctc cgccagtttg gttttggctt caaaatcgat
     4921 cacacttcca caaccaggca tccagttaag aaagccagcc caattggtag gtgaaatcac
     4981 cacgcattca tggccgagtt tgtccaaata atgcttgagg gccagggagg aacccattgc
     5041 atcgccatca ggtttctgat gggtggtgat cacaacccgg gctcgatcac cctgaagcaa
     5101 tggaaaaaat gcatctatag ctttcataac gcgggtgcaa aattgtgtgc ctgatgatga
     5161 ggaatcaaaa aaagtttacc ctttgactgt atcatattgt gtataaacaa gtgtgctcac
     5221 tcccgtttgg cttgttgcca atcaagtaat ggcttgaagc accaatcttt cttttctata
     5281 caaaatgatg gccagggctg aaatggtgaa agatgcaatg acggtcaata aggccacatt
     5341 tggcaaggtc aactgcttag ttatttgtag aaataaaacc cctagtccat taataatcaa
     5401 tcctcccaat ccagcaagta aattgttttt gaatttgcct acagcagaat gccagtagct
     5461 ggtcagcaaa taaatgctgt agaaaagcga gccgaatgcc agcacaacaa gaaaggattt
     5521 taccccttca aattgcggac cgaatatcca ggtgtacaaa ttgccgggga aaagctgaat
     5581 caaaaagcaa atcgccagca ttaatgccac atttattgcc aacagtcgca ggaacccact
     5641 acctcgttgc ccggcttttt tgctttctcc cactgcttgc gtgtaataga tctgtcccat
     5701 actgccagga accagcagca ttgcctctgc cagcgagagt gaattggtga aaacacccaa
     5761 acctgccgcg ggaagcaggt aatacatgta tcgactgttc aacatgctca ccacatgccc
     5821 agcct
//
LOCUS       DATIQF010000587         5942 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_161563,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000587 DATIQF010000000
VERSION     DATIQF010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5942
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161563"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1235)
                     /locus_tag="VLL95_09895"
     CDS             complement(<1..1235)
                     /locus_tag="VLL95_09895"
                     /inference="COORDINATES: protein motif:HMM:NF045451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39212.1"
                     /translation="MQMKGLVRVFAVLMVIFSLYQLSFTWFVSSHEKKMKEKAERQVK
                     AALPTAAAKYPGNKELQALYQDSIDMAIQQRYQRLLDSTSQQKITWWGFNYKDAKDQE
                     AKLGLDLQGGMNVTLEVGMADLLRSLSGYSTDKGFNEALTKAVAQKATSGLDLIDLFV
                     ENYRKVAPGNKLAPLFVSGSNKRITFESSDEAVINYLRQESDVAFTNTYNILQNRIDR
                     FGVASPTINPDKVKKIITVELAGVTDKERVRKYLQSSANLQFFELYNLNEIGESLLKG
                     EQALATVLKGGTVQKDSLGNVIADTTAAKDTSAAALAKEAPIRSLFLQLYQPQQDPSG
                     KVVFPSAIGIVQTKDTATLGERLRDPVVASQLPSNLKFAFGYSGGENEKNNGLMAVYA
                     MKTVDGMRAKLEGEHVSDAR"
     gene            1554..2084
                     /locus_tag="VLL95_09900"
     CDS             1554..2084
                     /locus_tag="VLL95_09900"
                     /inference="COORDINATES: protein motif:HMM:NF013073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HSR39213.1"
                     /translation="MILLVTSLAIFASSCSHSRKSGGMPPSSQLPASFPIDSVLSLRL
                     GQPVPKGANPQLVSSAADWLGTPYRYGGSDIRGIDCSGLINSIFPKVYGTPVPRSTVE
                     LFAVATPVSKGDIKEGDLLFFTIDTQKPGHAGVYLWHNRFLHASTSKGVVISSLTEPY
                     WQKYFTGAGRIIPVKP"
     gene            2295..3488
                     /locus_tag="VLL95_09905"
     CDS             2295..3488
                     /locus_tag="VLL95_09905"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HSR39214.1"
                     /translation="MKLASRLQKFNEPETLKMAKLARELRAQGHDVVGLSLGEPDFDT
                     PDHIKKALIDAVNNNYSHYPPVAGYPELRAAICTKLKRDNNLDYKPEHTLVSTGAKQS
                     IANLVMATVEEGDDVIIPTPYWVSYSEVVRMAGANPILVRTSLESGFKISPAQLEAAI
                     TPNTKLFMFSSPNNPTGTVYTKEELAGLAAVFAKHPGIWIMSDEIYEYTNYIGKHESI
                     AQFEDIKDRVVIINGLSKGYAMTGYRLGYIACSNTDLVKACEKLQGQITSGANAATQI
                     GAVAALTGDMSPTDAMVKEFSERRKMVMQMLADIPNIRIDEPAGAFYVFPDVSYYFGK
                     KDGDTVIPNADALCMYLLEKAHVSTVTGGAFGEPNCIRISYAASREDIQKGFSRIKEA
                     LLRLQ"
     gene            3585..4895
                     /gene="rimO"
                     /locus_tag="VLL95_09910"
     CDS             3585..4895
                     /gene="rimO"
                     /locus_tag="VLL95_09910"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008172 - S-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0018339 -
                     peptidyl-L-beta-methylthioaspartic acid biosynthetic
                     process from peptidyl-aspartic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HSR39215.1"
                     /translation="MKTKKLHKDSVNIITLGCSKNLVDSEVLSGQLKANEINVVHESG
                     KLKHNIVVVNTCGFIDKAKEESVNTILEQVSLKQKGKLEKVFVTDCLSERYRDQLATE
                     IPEVDAWFGTMELPLILKQFNADYKSELLGERLLSTPQHYAYMKISEGCNRTCAFCAI
                     PLMRGNHISRSIDDLVAEAKGLVKRGVKEVMLIAQELTYYGLDIYKKRALPELLHKLA
                     DVEGLEWIRLHYAYPSKFPLEIIDVMKERPNICNYLDMPLQHASNNMLKAMKRQITRE
                     EMEELVGEIRSQLPEICLRTTLIAGFPGETRDDVEELKAFLEKMRFDRVGIFTYSHEE
                     GTSAYDMIDDVPADEKQARAQEIMEVQQEISYEKNQEKVGKVFKVLIDKKEAGRYLGR
                     TEYDSVEVDNEVVVHADRKLNPGEFVQVKITKAYDYDLEGEVVD"
     gene            4929..>5942
                     /gene="bshC"
                     /locus_tag="VLL95_09915"
     CDS             4929..>5942
                     /gene="bshC"
                     /locus_tag="VLL95_09915"
                     /inference="COORDINATES: protein motif:HMM:NF021586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol biosynthesis BshC"
                     /protein_id="HSR39216.1"
                     /translation="MDLKVERIAYPNTYSFSKLVNDYVSGVASLTPFYQFAPDMEGLK
                     ASIEQRKIHQPDRKVLVEALRQQYAGYTLTASQLANLDALANENSFTITTAHQPNIFT
                     GPLYFIYKILHAIKLAAHLKQELPQYDFVPVYYMGSEDADLDELGHFYVEGEKISWDT
                     DQAGAVGRMDTKGLEKIIQRLEGQFSHLPFGKKMVAICKAAYLQHNNIQQATLYLVNE
                     LFKQFGLLVVIPDNAQLKQLFVPVVQRELQEGFSQPLVLETAQAFAQHYKVQTEGRPI
                     NLFYLDENGRRERIEKIGDAYEVNALGLTFTQQEILQLAADRPELFSANVILRGVFQE
                     TILP"
BASE COUNT         1538 a         1465 c         1494 g         1445 t
ORIGIN      
        1 cgggcatcac tcacgtgttc gccttccagt ttggcacgca taccatccac ggtcttcatt
       61 gcatacacgg ccatcaggcc attattcttt tcattttcgc caccgctgta gccaaatgca
      121 aacttcaggt tagaaggaag ctggctggct accacgggat cacgcaaacg ctctccaagg
      181 gtggcagtat cttttgtttg tactatgcca atggcgctgg ggaataccac tttgcccgaa
      241 ggatcctgct ggggttggta caactgcagg aacaaactcc tgatgggagc ttccttggcc
      301 agggccgcgg cagaagtatc ttttgcagca gtggtgtcag ctattacatt gccgaggctg
      361 tctttttgaa cagtgccgcc tttcaaaacg gtggccagcg cttgttcacc tttcagcagg
      421 ctttcgccaa tttcattcag gttgtacagt tcaaaaaact ggaggttcgc tgaactctgc
      481 aggtacttgc gcaccctttc tttatcagtt acaccggcca gttctacggt aatgatcttc
      541 ttcaccttat cggggttgat ggtgggagag gccacaccaa aacggtcgat acggttttga
      601 aggatgttgt aggtattggt aaaggcaacg tctgattcct ggcgcaggta gttgatcact
      661 gcttcgtcgc tgctttcaaa agtgatgcgc ttgttgctgc cgctcacaaa caggggagcc
      721 agtttgttgc ccggtgccac cttgcggtag ttctccacaa acaggtcgat caggtcgaga
      781 ccagaagtgg ctttttgggc tacggccttc gtcagggctt cattaaaacc tttgtcggtg
      841 ctgtaaccgc tcaggctgcg cagcaggtcg gccatgccca cttccagggt cacgttcata
      901 ccgccctgca ggtccagtcc cagtttggct tcctggtcct tggcatcctt gtagttgaaa
      961 ccccaccagg taattttttg ttgactggta ctgtcgagca aacgctggta gcgctgctgg
     1021 atagccatgt caatgctgtc ctggtacaat gcctgcaatt ctttattgcc gggatacttt
     1081 gcagcagcag ttggcagggc agcctttacc tggcgctcag ccttttcctt catctttttt
     1141 tcatggctgc ttacaaacca ggtaaacgac aactggtaca agctgaagat aaccatgagt
     1201 acggcaaaca cccgcaccaa tcctttcatt tgcatacgaa cagtattatc cagatttaat
     1261 agggccgcaa aaatagggga attgatgttc cataaccatg ttttacacag gcaggggaaa
     1321 attgctgccg atttagggcg aaaacccttg tggctgttga ttttggggct gtcggcctgg
     1381 tgcatgaccg gtcccttttt cccgccctcc ggttgtactc ctcgcctcga acaagtcgag
     1441 gctgcggggt acccctacgg tcgggcagcc cttcggccgc tatgcacaat gctgcaaaac
     1501 ttcgaatccg gtcatacggt gtccgctgct attttgccgc catgttgggc cgaatgattc
     1561 tactggttac ctccctggcc atttttgcca gcagctgcag ccacagccgg aaatcgggcg
     1621 gtatgccacc cagttcacaa ctgcctgcct cttttcccat cgattcggtt ttatcccttc
     1681 ggctcgggca gcctgtaccc aaaggggcca acccacagtt ggtgtcttcc gcggccgact
     1741 ggctgggcac tccttaccgc tacggcgggt ccgacatccg gggcatcgat tgcagcggcc
     1801 ttatcaacag catttttcca aaagtgtatg gcacccctgt gccacggtcc accgtggagc
     1861 tctttgcggt agccacccct gtttccaagg gtgatattaa agaaggtgac ctgttgtttt
     1921 tcaccatcga cacccaaaag ccggggcatg cgggcgtata cttgtggcac aacaggtttt
     1981 tacacgccag caccagcaag ggtgttgtca tcagcagttt gaccgaaccg tactggcaga
     2041 agtatttcac aggagccgga agaatcatcc cggtcaaacc ctgacatttc ctgctttgca
     2101 acccatttct attttgcctg gaatcatttt ctcccttgca ttcttatcaa aagaaagcgg
     2161 caaccaaatg cgaaatatgg atgaatttct tctaacattt tgttcaaatg tttagcagag
     2221 attcaataac tggcaagtct ctttaaatta ccttcgcgcc acaaaatttc gaaccgctaa
     2281 ttaccaagtg acaaatgaaa ctcgcttcaa gactgcagaa attcaatgaa cctgaaacgc
     2341 tgaaaatggc caaactggcc cgtgaactga gggcgcaggg ccacgatgtg gtagggctga
     2401 gcctgggtga acccgacttt gatacacccg accatatcaa aaaggcgctc attgatgccg
     2461 tcaataacaa ctactcgcat tatccgccgg ttgctggtta tcccgaactc cgcgccgcca
     2521 tttgtaccaa actcaagcga gacaataacc tggattataa acctgaacac acattggttt
     2581 caaccggtgc caagcaaagc attgccaacc tggtgatggc caccgtggaa gagggtgacg
     2641 atgtgattat tcccacgcct tattgggtga gctacagcga agtggtaagg atggcgggcg
     2701 ccaatcccat cctggtgcgc acttccctgg aatcaggctt caagatctca ccggcacaac
     2761 tcgaagcagc cattacgccc aataccaaac tgttcatgtt ctcttcgccc aataacccca
     2821 ccggcacggt gtataccaaa gaagaactgg cagggctggc agcagttttc gccaaacatc
     2881 ctggaatatg gatcatgagc gatgagatct atgaatacac caactacatt ggcaaacatg
     2941 aatccattgc gcagttcgaa gacatcaagg atcgtgtggt gatcatcaat ggactgagca
     3001 aaggctatgc catgacaggc tatcgcttgg gctacatcgc ctgctccaat accgatttgg
     3061 tgaaggcttg cgaaaagctg cagggacaaa tcaccagcgg tgccaacgcg gccacgcaaa
     3121 taggagcggt ggctgccctt accggcgaca tgagccctac cgatgccatg gtaaaagagt
     3181 tcagtgaacg tcgcaaaatg gtgatgcaga tgctggccga catacccaac atccgcattg
     3241 atgagcccgc cggcgcattc tatgtgttcc ctgatgtgag ctactatttc ggcaagaaag
     3301 acggcgacac ggttataccc aatgctgatg ccttgtgtat gtacctgctt gaaaaagccc
     3361 atgtgagcac ggttaccggt ggcgcttttg gcgaacccaa ctgcatacgc atcagctatg
     3421 ccgccagcag ggaagacatt caaaaaggat tcagccgcat taaagaggcc ctccttcgtt
     3481 tacagtaaat cattttcact ggtttgaaat aagccccttc gaattccgga ggggctttgc
     3541 ttttaacgta ttttggcagc tttaagcgat acctttgccg ccgcatgaaa acaaagaaac
     3601 tccacaaaga ctcggtcaat atcatcacgc tgggatgcag caaaaacctg gtggacagtg
     3661 aggtattgag tggacagctc aaggcaaacg aaattaacgt ggtgcatgag tcgggaaaat
     3721 tgaaacacaa tattgtggtg gtaaacactt gtggctttat tgataaagca aaagaagaaa
     3781 gtgtaaatac catcctggaa caagtatcgc tgaagcaaaa aggaaagctg gaaaaggtgt
     3841 ttgttaccga ttgtttgagc gaacgttacc gcgaccagct ggctactgaa attccggaag
     3901 tggatgcctg gtttggcacc atggaattgc ctttgatatt gaagcaattc aatgctgatt
     3961 ataaaagtga attgttgggt gaacgcttgt tgagtacacc gcagcattac gcctatatga
     4021 agatcagcga aggctgcaac cgcacctgtg cgttttgtgc catcccgctg atgcgtggca
     4081 accatataag ccgttccatt gatgacctgg tggccgaagc caaaggcctg gtgaagcgtg
     4141 gcgtgaaaga agtaatgctc attgcccagg aacttactta ctacggcctg gacatttata
     4201 agaaacgtgc cttgcccgag ttgttgcata aactcgccga tgtggaaggg ttggaatgga
     4261 tccgtttgca ttacgcatat ccctccaagt tcccattgga gatcattgat gtcatgaagg
     4321 agcggcccaa catctgcaac tatctcgata tgccattaca gcacgccagc aacaacatgc
     4381 tgaaagccat gaagcggcag ataacaagag aagagatgga agagttggtg ggagagattc
     4441 gcagccagct gccggaaatt tgtttgcgta ccacgctgat cgctggcttt ccgggcgaaa
     4501 cacgggacga tgtggaagaa ttgaaagcct tcctcgagaa aatgcgtttc gacagggtgg
     4561 gtatattcac ctacagtcat gaagaaggca cttcggcata cgacatgatt gacgatgtgc
     4621 cggcagacga aaagcaggca cgggcccagg aaatcatgga agtgcagcag gagatcagct
     4681 acgagaagaa ccaggaaaag gtgggcaaag tgttcaaagt gctgatcgat aaaaaagaag
     4741 ccggcaggta tttgggccgc accgaatacg atagtgtgga agtagacaat gaagtggtgg
     4801 tgcatgccga ccgcaaactg aatcccggcg aatttgtgca ggtaaaaatt accaaagcct
     4861 acgactacga tttggaagga gaggtggtag actaatacaa ttaaaacgaa gcaacctgac
     4921 gaacggatat ggatttaaaa gttgaacgca ttgcttatcc caacacatac agctttagca
     4981 agttggtgaa cgattatgtg tcgggagttg cttctcttac accattctac cagtttgctc
     5041 ctgatatgga aggcctgaaa gcttccattg aacagcgcaa aatccatcag cccgatagaa
     5101 aggtattggt ggaagcattg cggcaacaat atgcagggta tacactcacg gcatcccaat
     5161 tggccaacct cgatgcattg gccaatgaaa actcttttac cattaccacg gcacaccagc
     5221 ccaatatttt cactggtccg ctttatttca tttacaaaat attgcacgcc atcaagctgg
     5281 ccgctcattt aaaacaggag cttccccagt acgattttgt tcccgtttat tacatgggca
     5341 gtgaagatgc tgacctggat gaactgggtc atttttatgt ggaaggcgag aagatcagtt
     5401 gggatactga tcaggctggt gcggtgggtc gtatggatac caaagggctc gaaaagatca
     5461 tccagcgact ggaaggacag ttcagccatc ttccatttgg aaaaaaaatg gtagcgatat
     5521 gtaaggcagc ctacctgcag cataacaaca tccagcaggc aactttgtac ctggtgaatg
     5581 agttgttcaa acagtttggc ttgttggtgg tcattcccga caatgctcaa ctgaaacagt
     5641 tgtttgttcc tgtggtgcaa agagaattgc aggaaggatt ttcacagcca ttggtgctgg
     5701 agacggctca agcatttgca caacattaca aggtgcaaac ggaaggtcgc cccatcaatc
     5761 ttttctacct cgatgaaaac ggcaggagag agcgtattga gaaaatcggt gatgcttacg
     5821 aggtgaatgc cttgggactc acctttacgc agcaggagat cctgcaactg gcagccgatc
     5881 gtccggaatt attcagcgcc aatgtgatcc ttcgcggcgt tttccaggaa accattttgc
     5941 cc
//
LOCUS       DATIQF010000588         2415 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_116134,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000588 DATIQF010000000
VERSION     DATIQF010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2415
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116134"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..548)
                     /locus_tag="VLL95_09920"
     CDS             complement(<1..548)
                     /locus_tag="VLL95_09920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39217.1"
                     /translation="MENNPTSSALTAENFINNDVAPEDVAIQKPAPVAKENRIQTIDM
                     VRGFALCGILLMNIIGFGTDNGTLFKVANGPHNNADYITMGAIITFFDGTMRGLFSML
                     FGAGMILFLSGKQERPSGPRVADYYYRRLLWLVLFGVFNAFVLLWPGDILYYYGLAGM
                     ILYPFRKSAPKVLIMLGLLCFL"
     gene            complement(585..2051)
                     /locus_tag="VLL95_09925"
     CDS             complement(585..2051)
                     /locus_tag="VLL95_09925"
                     /inference="COORDINATES: protein motif:HMM:NF016150.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF418 domain-containing protein"
                     /protein_id="HSR39218.1"
                     /translation="MEPNHPETSPVPQPEVPPASAAPGRQLSLDVLRGAALLGGLLIS
                     VWLFGGFTTNKQYGLLSHPSGGNYRLFAAVSLLFEGKMRALIGIVFGAGIALYLGKRL
                     QADAGKAHDYFVRRQLWLMGLGIVNGVLLLWQNDLLFHLGLMGILLLPFAQASPRALL
                     ATSLVFMFIFCGKLFWNYSDDKTALRKYNTVLAVEKKFKADSAARAKQDSLSHKAVAV
                     AANAKDSAAKKNEAKKDTLTRKQKEDKEKWEGRLKQMKYDPKADEGSRKMMREVSYVK
                     LWSSTLNSTQGREAAWTYRIGVWELGMSILLGLALLKLGFFENNLSRRQYLLIALAGI
                     GIGLLCGWYRLYFQNAALLDYGKYVKTRWLPYDILVPLERLSQAIGYASLAMWLLSVS
                     WLGWLRTSLAACGRISLTLYLLQTIVCVLFFYGIGLNNYGNLSQWQLYLFVLEFWLVQ
                     IVFSIFWLKFYPIGPAEWLWRCLVAKKWLPFKNYNEAA"
     gene            complement(2233..>2415)
                     /locus_tag="VLL95_09930"
     CDS             complement(2233..>2415)
                     /locus_tag="VLL95_09930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39219.1"
                     /translation="SFISNPFGRLLYKASHEAEEVHVQELDLAKTDSYRTHWPFMRDR
                     RIDSYQPITRRFIDEG"
BASE COUNT          608 a          601 c          642 g          564 t
ORIGIN      
        1 ataaggaaac aaagcaagcc gagcatgatg agcactttgg gagcggactt gcggaaggga
       61 tacaggatca ttccggccag gccgtagtaa tacaggatat cacccggcca cagcaataca
      121 aaggcgttga atacaccaaa caacaccagc cacagcaggc ggcgataata atagtcggca
      181 acccttgggc ctgaagggcg ctcctgtttg cctgacaaaa acaatatcat gccggcacca
      241 aacagcatgg aaaaaagacc acgcatggtg ccgtcaaaaa aggtgatgat ggcacccatg
      301 gtgatgtaat cggcattgtt gtgcgggcca tttgctactt taaaaagtgt gccattgtcg
      361 gtgccaaaac caatgatatt catgagcagg ataccacaca atgcgaagcc ccgcaccatg
      421 tcgatggttt gaatgcggtt ttccttagcg accggtgccg gtttctgaat ggccacatct
      481 tcaggggcca catcgttatt tatgaagttc tctgcggtca gagcagatga ggtaggattg
      541 ttttccatgt tgccaaattt tgtttggttt acttaatgtt gggttcaggc agcttcattg
      601 taatttttga atggaagcca ctttttggca acaagacatc gccaaagcca ctcagcgggg
      661 ccaatggggt agaatttgag ccagaatatg ctgaatacga tctgcaccag ccagaactcc
      721 aacacaaaca ggtacaactg ccactggctt aggtttccat agttgttgag cccaatgccg
      781 tagaagaaga gcacacaaac aatggtttgc aacaggtaga gggtcagcga tattcttccg
      841 caagcggcca gcgaagtgcg cagccagccc agccacgata cagacaacag ccacatggcc
      901 aaagaagcat agcctatggc ttgcgaaagc ctttccaaag ggacgagaat atcataaggc
      961 agccatcggg tttttacgta tttgccatag tcgagcaagg cggcgttctg gaagtaaaga
     1021 cggtaccagc cgcacaacaa gccaatgcca atgccggcca atgcgatcag gaggtattgc
     1081 cgtcgggaga ggttgttttc aaaaaagccc agtttcagca aagccaggcc cagcaatata
     1141 ctcatgccca gttcccatac gccaatgcgg taagtccagg cggcttcccg gccctgcgta
     1201 ctgttgagtg tggagctcca taatttgaca tacgacactt cccgcatcat tttgcggctg
     1261 ccttcatcgg ccttggggtc atatttcatt tgcttcaggc gaccttccca tttctccttg
     1321 tcttcttttt gcttccgggt cagcgtgtct tttttggctt catttttctt agcagcgctg
     1381 tctttggcat tggcggccac cgccactgct ttgtgcgaca ggctgtcttg tttggcacgg
     1441 gctgccgagt ctgctttgaa tttcttttct actgccaaca cggtattgta tttgcgcaag
     1501 gcagttttgt catcggagta attccagaaa agcttgccgc aaaaaatgaa catgaatacc
     1561 agcgatgtgg ccagcaaggc ccgggggctg gcttgcgcaa atggcagcag caaaatgccc
     1621 ataagtccca ggtgaaaaag caagtcgttt tgccagagca gcaagacgcc gtttacaatg
     1681 cctaagccca tgagccaaag ctggcgccgc acaaaatagt cgtgcgcctt accggcatcg
     1741 gcctgcagcc ttttgcccag gtagagggca atgccggcgc caaacacgat gcctatcagg
     1801 gcccgcattt tgccttcgaa cagtaatgaa acggcggcga acaaacggta atttccgccg
     1861 ctgggatgcg atagcaggcc atattgtttg ttggtcgtaa aaccgccaaa tagccataca
     1921 ctaatgagca ggccgcccag caaggcggcg cctcgaagca cgtcgagaga aagctgacgc
     1981 ccgggtgctg cagatgccgg cggcacctct ggctgcggca caggggatgt ttcaggatgg
     2041 ttgggctcca ttttcagatt gggtttgcga gggttaaatc aaaatttgaa taatatacgg
     2101 cggacttttt ctgtatccac cttttttatt tcaaaggctg accagcaggt atgtccggtg
     2161 caggcatgct attgcccgcc cctcgcaaaa agggggggaa gtcaggaagc tgaaaacact
     2221 caggatggat tgctatcctt cgtcgatgaa gcgcctggta ataggctgat agctgtcgat
     2281 gcggcgatca cgcatgaatg gccagtgggt gcggtagctg tctgttttgg ccaggtccag
     2341 ttcctgcaca tgcacttctt ctgcttcatg gctggctttg taaagcaggc gtccgaaagg
     2401 attgctgatg aagga
//
LOCUS       DATIQF010000589         5025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_283005,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000589 DATIQF010000000
VERSION     DATIQF010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5025
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283005"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..698)
                     /locus_tag="VLL95_09935"
     CDS             complement(<1..698)
                     /locus_tag="VLL95_09935"
                     /inference="COORDINATES: protein motif:HMM:NF015692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribosylglycohydrolase family protein"
                     /protein_id="HSR39220.1"
                     /translation="MKKAGLLPIAMFLVLLSCFSQPTPPNPAMVYKATRQPAGAIVID
                     RAQYREQLYGYWLGTCIANWTGLVTEMDKIGNIGAIKTGPFYTRQDWGKPDQPSIWGQ
                     GLPSTLSPTIDFVFARPDSVWGSDDDTDIEYLYQELLLQHQTSVLTGEQIRDGWLAHI
                     RQEEENFLWVSNQKAFDLMRKGLVPPATGDPANNPEHEMIDAQLSTEIFGLYSPARPD
                     FAETMARLPIQNTA"
     gene            complement(914..2290)
                     /gene="tig"
                     /locus_tag="VLL95_09940"
     CDS             complement(914..2290)
                     /gene="tig"
                     /locus_tag="VLL95_09940"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR00115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HSR39221.1"
                     /translation="MATVTRNNVGLLTDRITVQLTKEDYYPAFEKALKNYGKKANVPG
                     FRPGMVPMGHIKKMFGSSVFTEEILRTVEKEINGYLEKERPEIFGQPLPTDDNAETVR
                     QLDMNLPSDYSFSFEIGLRPDFTVASLPAATIKRRKVAVTDEMVSEEVSRLQTRYGNM
                     TEPETVASEQHVLNVTFQEADAAGHLVEGGISKDNSLLVSYFAEAVRPKLMGLKKDDS
                     IALTIDEAFDAKEKEWIIGDLGLNEVADAGSKSFKITLTKIGFVETRELNEEFFNQLF
                     PGKAIATEAEFRNAVKEDIEAYWANQSRSQVQDEIYHYLIDNSHIEFPTDFLKRWLQQ
                     GGENPKTAEEVEKEFPSFLNSLRWSMISDKLMQENQISVQAEELRDFAKRQMMGYMGV
                     TTLDESTAWLDSYVDRMMQDRKYIDQMYNQLMTDKLFTWAEGQVTNFQNELVSVEEFT
                     AKQHHHHH"
     gene            complement(2644..3096)
                     /locus_tag="VLL95_09945"
     CDS             complement(2644..3096)
                     /locus_tag="VLL95_09945"
                     /inference="COORDINATES: protein motif:HMM:NF027592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4920 domain-containing protein"
                     /protein_id="HSR39222.1"
                     /translation="MKKLIFAAVFAAFGLVAFAQEGKDFGEPVKAKKALSVEKMKSKM
                     DAKDEWEGVVTGTVKQVCKSEGCWLRLDDGSKDGIMVKLKDHSFFVPKDIDGKTVYVS
                     GKAVRKTTSVKELQHYAEDAGKSKEEIAKITEPKVEITMEASGVKVMQ"
     gene            3289..4302
                     /gene="recA"
                     /locus_tag="VLL95_09950"
     CDS             3289..4302
                     /gene="recA"
                     /locus_tag="VLL95_09950"
                     /inference="COORDINATES: protein motif:HMM:TIGR02012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HSR39223.1"
                     /translation="MSNTANAEKLKALKLTIDKIDKDFGKGSVMMMNEKGVHQLEVIS
                     TGSIGLDSALGIGGLPRGRVIEIYGPESSGKTTLSTHVIAEAQKRGGICAIIDAEHAF
                     DSNYAQKLGVDVDNLLISQPDYGEQALEIADRLILSGALDVVVIDSVAALVPKGELEG
                     EMGDSKMGLQARLMSQALRKLTATINKTGTICIFINQLREKIGVMFGNPETTTGGNAL
                     KFYASVRLDIRRVSQLKDGDEAVGNRVRVKVVKNKVAPPFRQAEFDIIFGEGISKSGE
                     IIDMGVELGILQKSGSWFSYEGNKLGQGRDAVKELIRDNPELSAEIEGKIREKIKEMQ
                     DAG"
     gene            complement(4438..>5025)
                     /locus_tag="VLL95_09955"
     CDS             complement(4438..>5025)
                     /locus_tag="VLL95_09955"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR39224.1"
                     /translation="NNLASCKVIWQASNGLEVKELIAKEAPDVMLLDIRMPEMNGFDT
                     CAWLTRHHKSVKVLALSMMDEENAVIKMLKSGAKGYLLKDSEPMELANAIRAVFEQGF
                     YFNEMVTGKLLHSILQENLDVGDREEDRFLLSAREKEFLQLVCTEYTYREIADIMKMS
                     PRTIDGYRDVLFERLGVKSRVGLVIYAIRKGIFIP"
BASE COUNT         1141 a         1355 c         1277 g         1252 t
ORIGIN      
        1 ctcgccgtat tctggatggg taagcgggcc atggtctcgg caaaatccgg tcgggcaggg
       61 gaatagagcc cgaatatttc ggtggacagc tgggcgtcga tcatctcatg ttcgggattg
      121 ttcgcgggat cgccggtggc cggtggcacc aggccttttc gcatcaggtc gaacgccttc
      181 tggttggaga cccacaggaa attctcttcc tcctgcctga tatgtgccaa ccatccatcc
      241 cggatttgtt ctcctgtcaa cacagaggtt tggtgctgca gtaacaattc ctggtagagg
      301 tattcaatat cggtatcatc atcacttccc cacacgctgt cggggcgggc aaatacaaaa
      361 tcaatggtag gcgaaagggt actgggaagg ccttgtcccc aaatgctggg ctggtcgggc
      421 tttccccaat cctgccgggt atagaacggc ccggtcttga tggcgcctat attcccgatc
      481 ttgtccattt cagtcaccag ccccgtccag ttggcaatac aggtgcccag ccaataaccg
      541 tacaactgct cccggtattg tgccctgtca atgacaatag ccccggctgg ttgcctggtc
      601 gccttataaa ccatggcagg gttgggcgga gttggctgcg aaaagcagga cagcaatacc
      661 aggaacatgg caatcggaag caaacccgct tttttcatgg caattctttt tggcgtgaaa
      721 gtggcacagt taacacacaa tgcttcgcta aggtagcgca ttcacaaggg cttcctttgc
      781 agggcaacac ctgcatacct gcaattcggc accatccggc agcgtcacag cctggggcag
      841 acaaaaaaac gccccgggca ttccggagcg ttagtgatta ttgtaaccac ataccccttt
      901 taggggcagg ggatcaatga tggtggtggt gctgcttggc agtaaactct tccacgctta
      961 ccagctcatt ctggaagttg gtcacctgtc cttcggccca ggtaaacagc ttgtcggtca
     1021 tcagctggtt gtacatctgg tcgatatact tgcggtcctg catcatgcgg tctacatagc
     1081 tgtcgagcca ggcagtgctt tcatccagcg tggtcacgcc catatagccc atcatctggc
     1141 gcttggcaaa atcacgcagc tcttcggcct gcacgctgat ctggttttcc tgcatcagct
     1201 tgtcgctgat catgctccac ctcagtgagt tgaggaaaga agggaattcc ttttccactt
     1261 cttcagctgt cttgggattt tcaccaccct gctgcaacca gcgcttcagg aagtcggtgg
     1321 ggaattctat gtggctgttg tcgatcaggt aatgataaat ttcgtcctgc acctggctgc
     1381 ggctttggtt ggcccagtag gcttcaatgt cttctttcac cgcgttgcgg aactcagctt
     1441 ccgtggcaat ggctttgccg gggaaaagct ggttgaagaa ttcttcgttc agttcgcggg
     1501 tttccacaaa accaattttg gtcagcgtga tcttgaatga tttgctgccg gcatcggcca
     1561 cttcattcaa cccgaggtcg ccaatgatcc attctttctc cttggcatca aaggcttcgt
     1621 cgatggtcaa tgcaatgctg tcgtcttttt tcaggcccat cagtttgggg cgcaccgctt
     1681 cagcaaaata gctcaccagc aggctgttgt ccttgctgat accgccttcc accaggtggc
     1741 cggccgcatc tgcttcctgg aaagtaacgt tcagcacatg ctgctcgctg gccactgttt
     1801 cgggttcggt catattgcca tagcgggttt gcaggcggct cacttcttcg ctcaccatct
     1861 catcggtaac cgccactttg cggcgcttga tggtggcggc aggcaggctg gccacggtga
     1921 agtcggggcg caggccaatc tcgaagctga agctgtagtc cgaaggcagg ttcatatcca
     1981 gctggcgaac ggtctccgca ttgtcgtcag taggcagggg ctgaccaaag atctcggggc
     2041 gttctttttc gaggtagccg ttgatttctt tttctacggt gcgcagtatt tcttcggtaa
     2101 acacactgga accaaacatt ttcttgatgt ggcccatggg taccatgccc ggacggaaac
     2161 ccggtacatt ggccttcttg ccatagtttt tcaacgcttt ttcgaaagca ggatagtaat
     2221 cttctttggt caattgaacg gtgatcctgt cggtaagcag gcccacattg ttccgggtaa
     2281 ctgttgccat tatgaaattt gaagtttgaa gtttttggtt tggcggatca gggtggcctt
     2341 catcgccttc ccgcatcccg tttggatttg gggctgcaaa agtaacggaa tacagggatg
     2401 cgtatgcatt cttaacaaat ggccctccct cgggaccctc cttacctggg ctttagcgat
     2461 ggccggtccc ccgcacctgt cctgtttggt gccccaaacc atagtgctgg tatcccggca
     2521 aaatggcaat aagtaggttt gaaaatatcc atcaaccgtc aactcccaac cgtcaaccaa
     2581 acaaaaaacc cgcacctctc ggtacgggct gtttatcagg caagcaatcg aagcaggact
     2641 tgtttactgc atcactttta caccgctggc ttccatggtg atctccacct tgggctcggt
     2701 gatcttggca atttcttcct tgctcttgcc ggcatcttcg gcatagtgct gcaactcttt
     2761 tacggaagtg gtcttgcgaa cggctttgcc gcttacatat acggtcttcc cgtcaatatc
     2821 cttgggtacg aaaaagctgt gatccttcaa ttttaccatg atgccatcct tgctgccatc
     2881 gtccaggcgc agccagcaac cttcactctt gcatacctgc ttcacggtgc cggtcaccac
     2941 gccttcccat tcgtccttgg catccatttt tgacttcatc ttctcaaccg acaaggcttt
     3001 cttggctttt accggctccc cgaaatcctt gccttcttgt gcaaatgcca ccaggccgaa
     3061 agcggcaaaa acggcggcaa aaatcaattt tttcatagcg gaatcttttt agtccgtcaa
     3121 aggtaagtgt cctttccgca accccttcac tattaactta caaagaatgt tagcatgaaa
     3181 aaactaaaaa aattagtgtg aaaaatattt tcctcctatc tttaccgcct taatactttt
     3241 ataccgtaaa cgatggccaa aacgcagcaa aacacagaaa cagagaccat gagcaataca
     3301 gccaatgcag aaaaactgaa agcgctgaaa ctgaccattg acaagatcga caaggatttt
     3361 ggcaagggca gtgtaatgat gatgaatgaa aagggtgttc accaattaga ggtgatcagc
     3421 accggttcca tcgggctgga ttccgccctc ggcatcggcg gtttgccccg cggccgtgtc
     3481 atcgagatct atggtcctga atcgagcggt aaaaccacct tgtctaccca cgtgattgcc
     3541 gaagcccaga agcggggcgg catctgtgcc atcatcgatg cggaacacgc cttcgacagc
     3601 aactatgccc agaaattggg cgtggatgta gataacctgc tcatcagcca gcccgattac
     3661 ggcgaacagg ccctcgaaat cgccgaccgc ctcatcttgt cgggcgccct cgatgtagtg
     3721 gtgatcgact ccgtggccgc cctggtgccc aaaggcgaac tcgaaggaga gatgggcgac
     3781 agcaaaatgg gtctgcaggc ccgcctcatg agccaggccc tgcgcaagct caccgccacc
     3841 atcaataaga ccggtaccat ctgcatattc atcaaccagc ttcgcgaaaa aattggcgtg
     3901 atgtttggta atcctgaaac aactacgggc ggtaatgcgt tgaagttcta cgcctcggtg
     3961 cgtttggaca tccgccgcgt aagccagttg aaagacggcg atgaagcggt aggcaaccgg
     4021 gtgcgggtaa aagtggtaaa gaacaaagtg gcacctccct tccgccaggc agaatttgac
     4081 atcatttttg gcgaaggcat cagcaagagt ggcgagatca ttgacatggg cgttgaactg
     4141 ggcatcctgc agaaaagcgg aagctggttc agctacgaag gcaacaaact gggacaagga
     4201 cgcgatgcag tgaaagaact cattcgcgac aacccggaat tgagtgccga aatagaagga
     4261 aagattcgtg agaagataaa ggaaatgcag gacgcggggt aatgcccatc ctgcccaaca
     4321 gattgttgct gctggcagtt gccgcggcgg caattcccgc aaggggttag taaatatgcg
     4381 caaccgcctc ctgttttgga ggcggttttt gcttggctat tttacaggat gctttgatca
     4441 gggaatgaaa atgcctttgc ggatggcata gatcaccagg cctaccctcg actttacgcc
     4501 cagtctttca aaaagtacat cgcggtaacc atctatggtg cgggggctca tcttcatgat
     4561 gtccgcaatt tcacgatagg tgtattccgt acaaaccaac tgcaggaatt ccttttcccg
     4621 ggcactgagc agaaaacgat cctcctccct gtcgcccacg tccaggttct cctgcaaaat
     4681 gctgtgcagc agcttaccgg ttaccatttc attgaaatag aacccctgct cgaacaccgc
     4741 ccggatggca ttcgccagct ccatgggttc ggagtctttg agcaaataac ccttggcgcc
     4801 cgatttcagc attttgatca ccgcgttttc ttcatccatc atactcagcg ccagcacctt
     4861 caccgattta tgatggcggg tgagccaggc gcaggtgtca aaaccgttca tctccggcat
     4921 gcggatatcc agcagcatca cgtcgggcgc ttctttggca atgagttcct tcacctccag
     4981 cccgttggag gcctgccaga tgactttgca ggaagccaga ttgtt
//
LOCUS       DATIQF010000590         5822 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_161575,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000590 DATIQF010000000
VERSION     DATIQF010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5822
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161575"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..188
                     /locus_tag="VLL95_09960"
     CDS             <1..188
                     /locus_tag="VLL95_09960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39225.1"
                     /translation="LTGMEKQNYKKLVDQLILIYGDKKAATKDPKLKAEYEKEEKKWN
                     DLYSKISHYLASINTGH"
     gene            400..1335
                     /locus_tag="VLL95_09965"
     CDS             400..1335
                     /locus_tag="VLL95_09965"
                     /inference="COORDINATES: protein motif:HMM:NF013292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase"
                     /protein_id="HSR39226.1"
                     /translation="MLASKAQGPQAPGKKPIVISTWAPNVKANAAAWEVLAAKGKSLD
                     AVHKGVMVPEADPEDQSVGYGGLPDRDGKVTLDACIMDHQYNIGAVMALEHIMHPISV
                     ARLVMEKTPHVQLVGGGALQFALENGFKKENLLTSKSEAAWKEWLKTSKYNPMTTVEN
                     QLERIKNNHDTIGMLALDAQGNLAGACTTSGMAYKMHGRVGDSPIIGAGLYVDNEVGA
                     ATATGVGEEIVRICGSYAVVEMMRQGHSPADACRLVVERYIRIRGKEKARQMQAGFIA
                     LNKNGEYGCFSVTKDFTMAVRSADENMVVNAPYSV"
     gene            1414..1890
                     /locus_tag="VLL95_09970"
     CDS             1414..1890
                     /locus_tag="VLL95_09970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39227.1"
                     /translation="MPGNIFNFMPKFLLMRPRTRTSLFLILLAFVSLALLPACKKAVQ
                     KAQEDFVVNLIVNNTWVVTNFAEGSNNITASFTPYEFKFNRDETVFGKRTGQPDAVGT
                     WRGDANSMTITAGFPSGPAPLNKLTGVWTITRTTLTTVTATRSEGSVVYNLSLVSK"
     gene            complement(1919..2932)
                     /locus_tag="VLL95_09975"
     CDS             complement(1919..2932)
                     /locus_tag="VLL95_09975"
                     /inference="COORDINATES: protein motif:HMM:TIGR03519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IX secretion system membrane protein
                     PorP/SprF"
                     /protein_id="HSR39228.1"
                     /translation="MKRFVCGLLLLNLANWALAQQRPHYTQYILNNYIINPAVAGIEN
                     YTDIKISHRHQWVGLQDEPVTTYATIHGSIGKDDTKSNPTTFLPEGENPRGRAYWEEY
                     TSAKPHHGWGVSIINDRTGPLSRFSAYGTYAYHLGIGPRTSISGGISLGVINNSLNTS
                     KLIFDNPVDPAVAASGTLNTLRPDINAGIWLYSANFFAGISAQQIIDQGLEFSDNTLT
                     TGNKTYPHLFGTFGYKFYAGQTFSIIPSVVFRYVEPLPFGVDFNVKAQYLDRFWFGAG
                     YRVEDGVSAMVGVNVSNIFNVGYAFDYTTSRLQNFTKGTHEIVLGFMLGNKWGDLCPR
                     NLW"
     gene            complement(2963..3721)
                     /locus_tag="VLL95_09980"
     CDS             complement(2963..3721)
                     /locus_tag="VLL95_09980"
                     /inference="COORDINATES: protein motif:HMM:TIGR04131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility-associated C-terminal
                     domain-containing protein"
                     /protein_id="HSR39229.1"
                     /translation="MVNLNPKTNFAALTSVCTDQAPFVITNGSETSGIPGTWKYEGRG
                     ITNPNGSFNPTVAGTGSHKISYIFTSSRGCSDTSSTIQSVFNFVTADAGPTRYSINGG
                     YTRLLGSSNQSSISAQWSPVLGLSNPNVLQPMAQPGKNQLYQLTVTSKDGCKASDTVS
                     VLVIDKLFIPNAFSPNGDGINDKWEIRYLDSSPDAIIQIFDRYGRLIFKQTGYNTPWD
                     GTNRGMPLPVGVYYYVLDLRNGGTISTGSVTLIR"
     gene            complement(3896..>5822)
                     /locus_tag="VLL95_09985"
     CDS             complement(3896..>5822)
                     /locus_tag="VLL95_09985"
                     /inference="COORDINATES: protein motif:HMM:NF037833.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="gliding motility-associated C-terminal
                     domain-containing protein"
                     /protein_id="HSR39230.1"
                     /translation="AANGLKIAIDTYWNGFDPSNSCPSGVPKLQMRWGFGYKECNETQ
                     PTLRNNNGELNFIRDGNFHKATINYNKGNITFAIDGKVYLSGFQTFNFTGYFGFTAGT
                     GNSYDRHSIRNAIIYTDMPDSDAGNGATICSGSTAQIGIPAPNPIYTYSWLPTTGLDN
                     PKAYNPRVTLPNTGAFPVKQKYYIYTEFAAIPGCSSVDSVEVIVNPLPTVTVTTTSNC
                     FQDTMVITPKTGWPDSITNTMQWSWIYGDPSSGFNTSAGLIGRHRFSAPGSYNVVMNQ
                     ITREGCSQTTSQPVTVRALPPSSFDAVNSGAVCINEPVKFVNRANAGTTGSTTVQPDI
                     GNNALQFKFNKLFSACDTVAINYRQAGVQEGKPFYVAKWSNTDAFGCIGTSTDTVIFR
                     AQPAITMAAQGGVCINVPSFNLNSATETSGLPGNGIYTGRGITNPGGTFNPVVAGIGT
                     HRISYIYQAQNGCVDTAIQNYSVYALPVVDAGPNKAVLPGGYALLEGSSSIAPQTIVW
                     TPANSLNNPNALRPEARPITDQTYVIVVTTAQGCSGRDSVKVRALSGLTIPNAFSPHT
                     NDAINDVWVIKNLDLFPGTIVSVFDRYGRQVYRSVGYSIPWDGKINGILVPVGVYYFV
                     IDPQNGNKIYAGSITIL"
BASE COUNT         1604 a         1306 c         1359 g         1553 t
ORIGIN      
        1 acctgactgg tatggaaaag cagaattata agaaactggt ggaccaattg attttaattt
       61 acggcgacaa aaaagccgcc acaaaagacc ctaagttgaa ggcagaatac gagaaagaag
      121 aaaagaagtg gaacgaccta tattctaaaa tatcccacta cttggcgagc ataaataccg
      181 gccattgagc cggtatttat ttgttttttg cacttaacat aatattaatt atagtttaag
      241 taagtaaatc tataaaccta actcattgac ctttaatatt atcatcaatg cccatatgca
      301 gactgtcgca tttgttatac ccatagattt gcctacatat aatagttata tatgagacgc
      361 cgcaaattcg tgacaatctt tacaggaaca tttgccggta tgctggcaag caaggcacaa
      421 ggaccgcagg cgcccggtaa aaaaccaatt gtcatcagta catgggctcc caatgtaaag
      481 gcaaacgcag ctgcatggga agtattggct gccaaaggaa aatccctgga cgccgttcat
      541 aaaggcgtta tggttccgga ggctgatcca gaggatcaaa gtgtgggtta tggtggccta
      601 cccgatcgcg acggcaaagt caccctcgat gcctgcataa tggatcacca gtacaacatt
      661 ggcgctgtga tggcgctgga acacataatg caccccatat cggtcgcacg ccttgtgatg
      721 gaaaaaactc ctcatgttca attggttgga ggcggtgccc ttcagttcgc tttagaaaat
      781 ggttttaaaa aagagaatct tttgacctca aaaagtgaag ccgcatggaa agaatggctg
      841 aagacttcta agtacaaccc catgaccacg gtcgagaatc aattggagcg gataaaaaat
      901 aaccatgaca caataggcat gctggcactg gatgcccaag gcaatttggc gggagcatgc
      961 accaccagcg gcatggctta caaaatgcac ggtcgtgtgg gtgattctcc cattatcgga
     1021 gcaggcttat atgttgataa tgaagtgggc gccgccaccg ccactggagt tggagaagaa
     1081 attgtgcgga tctgtggcag ttatgcagtg gtcgaaatga tgcgtcaagg acattctcca
     1141 gcagacgcct gtcggctggt ggtagagcga tatatcagga tccgtggaaa ggaaaaagcc
     1201 aggcaaatgc aggctggttt tatagccctg aacaaaaacg gagaatacgg ttgcttttcg
     1261 gttacaaaag attttaccat ggctgtgcgc agtgccgatg agaacatggt cgttaatgca
     1321 ccgtattcgg tataggctat cgggccagca tgaatgggat attcaaacca taacatgaga
     1381 gatatggaac agattaacac atacaagctt tgagtgcccg gcaatatttt taattttatg
     1441 ccgaaattct tacttatgcg acccagaaca cgcacatcct tgtttcttat cctcctagct
     1501 tttgtgtctt tggcgctcct gccagcttgc aagaaagcag ttcagaaagc gcaggaagat
     1561 ttcgtggtga acctgattgt caataacaca tgggtggtta ccaactttgc tgaaggttcc
     1621 aataatatca ccgcttcctt tactccgtat gaattcaaat tcaacaggga tgaaaccgta
     1681 tttggaaaaa gaacaggaca acctgatgca gtaggtacct ggcgaggtga tgccaactct
     1741 atgacaataa cggcaggatt tcccagtggg ccagcgcctt tgaacaagtt gacaggagtt
     1801 tggacaataa ccagaacaac attgacaact gtgacagcta cccgatcaga aggaagcgtg
     1861 gtttataatt tgtcgcttgt cagcaaataa ttacttcccg gcttaataaa ctattttgct
     1921 accagagatt ccttggacac aggtcgcccc acttgttgcc gagcatgaat cccagcacta
     1981 tttcatgggt gcctttggta aaattctgca acctggaggt tgtgtagtca aatgcatatc
     2041 cgacattgaa aatattggat acgtttaccc ctaccatcgc agacacgcca tcctctaccc
     2101 tatagccagc gccaaaccaa aatcggtcca ggtattgggc tttcacatta aagtcaaccc
     2161 caaaaggcaa gggttcaaca taccgaaaca ccaccgatgg tataatgctg aatgtttggc
     2221 ctgcataaaa tttataacca aaagtgccaa acaaatgtgg gtaggtcttg ttccctgtag
     2281 taagtgtgtt gtcgctgaac tccaaaccct gatcgattat ttgctgcgca gaaattccag
     2341 cgaaaaaatt tgcgctgtaa agccaaatgc ctgcatttat atcggggcgg agagtattca
     2401 gggtgccgct ggctgccact gccggatcaa cgggattgtc aaaaatgagt tttgaagtat
     2461 tcaatgaatt gttgatcacc cccaaactaa ttccaccgga aatactggtt ctgggaccaa
     2521 tgcccaaatg gtatgcataa gttccatatg ccgaaaacct actaagtggg ccggttctat
     2581 cgttaatgat ggataccccc catccatggt gaggcttggc gctggtatat tcttcccaat
     2641 aggcccttcc cctggggttc tcgccttccg gcagaaaagt ggtaggattg gattttgtat
     2701 catcctttcc aattgagcca tggatggtgg cataggtagt gacgggttca tcctgcaacc
     2761 caacccattg atgccggtga ctgatcttaa tatcagtgta attctcgatg cccgcaactg
     2821 caggattaat aatgtagttg ttgaggatat actgcgtata gtgtgggcgc tgttgtgcca
     2881 aagcccagtt agcaaggtta agtagtagta atccgcacac aaatcttttc ataaactaaa
     2941 attactgttt caaaacatcg ggtcagcgta ttaatgttac agaccctgtg gatatcgtcc
     3001 cgccatttct caaatccagc acataataat acacgccaac tggcaaaggc atacctctgt
     3061 tcgtaccgtc ccaaggggtg ttgtatcctg tttgtttaaa tatcaatctc ccgtaacgat
     3121 caaaaatctg gataatggca tccggtgatg aatcaaggta cctgatctcc catttatcgt
     3181 tgattccgtc accgttggga ctaaaggcat ttgggataaa caacttgtca attaccaaaa
     3241 ctgagacggt atcagatgct ttgcagccat ctttgctggt taccgtcaac tgatacaatt
     3301 ggtttttccc tggttgggcc atgggctgaa ggacattagg attgctgagc cccagcaccg
     3361 gtgaccattg cgccgaaata ctcgactgat tgctggaccc aagcaacctg gtgtatccgc
     3421 cattaatgct gtaccgcgtt gggccagcat ctgctgtcac aaaattaaaa acactctgga
     3481 tggtagaact tgtgtcgctg cagcctcttg aagaggtgaa gatgtaactg atcttgtgtg
     3541 acccggtgcc tgctacagtt ggattgaatg aaccgtttgg attggtaata cccctgccct
     3601 catatttcca cgtaccgggt atgcctgaag tttctgaacc gtttgtgatg acaaatggag
     3661 cctggtcagt gcacacactt gtcaaggcag caaaatttgt tttggggttc aggttcacca
     3721 cgatagtgtc ttgtttgaaa gtgctgcatc cctgtggcgt tctgttttcc caacggatga
     3781 tatggtttgg ttttccctgg gtaatgccgg cataagacgc aacagaactt tttttgaaaa
     3841 tggttgaact tttagatttt gattcaaatt gattttagcc gccatttgac ttaaactaaa
     3901 gtatcgtaat ggatcccgca tagattttgt ttccattttg gggatcaatt acaaaataat
     3961 aaacgcctac aggcaccaaa ataccattta tcttaccatc ccatgggatg ctgtagccta
     4021 cactcctgta cacctgcctg ccataacgat caaaaactga aactattgta ccggggaaaa
     4081 gatcaagatt cttgataacc caaacatcat tgatagcatc attggtatgg gggctgaatg
     4141 cattgggaat ggtaagccct gaaagcgccc tgacttttac tgaatctctt ccagagcaac
     4201 cctgggcagt ggtcaccaca ataacatagg tttgatcagt gatcgggcgt gcctcaggac
     4261 gaagagcgtt gggattgttg agcgaattgg caggcgtcca aactatggtt tgcggggcaa
     4321 tggaactcga gccttccaat aatgcatatc ccccaggcaa tactgccttg tttggtcctg
     4381 catccaccac cggcaaagcg tataccgaat agttctgaat cgctgtatca acgcacccgt
     4441 tttgcgcctg gtatatgtag ctgatcctgt gagtaccaat gccagctact accgggttga
     4501 atgttccgcc tggattggta atacctcgtc ctgtgtaaat gccatttccc ggtaatccac
     4561 tggtttcagt tgccgaatta aggttgaagg aaggtacatt gatacaaaca cctccctggg
     4621 cagccatggt aatagctggc tgcgccctga agatgactgt atctgtactg gtgccaatac
     4681 agccaaatgc atcggtgttc gaccatttgg ctacataaaa tggtttgcct tcctgcactc
     4741 ctgcctgcct gtaattaatg gcaacagtgt cgcacgcaga aaacagctta ttgaatttga
     4801 attgtaaggc attattgcca atatctggtt gtacagtggt gctgccagtg gtgcccgcat
     4861 tggcacgatt cacgaatttc accggctcgt ttatacatac cgctccgctg ttcactgcat
     4921 caaacgagga cgggggtaat gcccgaaccg taaccggttg agaggtagtt tgactacacc
     4981 cttcccttgt tatttgattc atcaccacat tgtaactgcc aggtgccgaa aacctatgtc
     5041 gaccaataag acccgctgaa gtattgaagc cagatgacgg atcgccgtat atccaactcc
     5101 attgcatcgt attcgttatg gaatcgggcc aaccggtttt gggagtgata accattgtat
     5161 cctggaagca attcgaggtg gtggtcaccg taacagttgg caatggattc acaatcactt
     5221 caacactgtc tacagaactg catcctggga tggctgcaaa ttcagtgtaa atgtaatact
     5281 tctgcttaac cggaaatgct ccggtattgg gaagagtaac cctgggatta taagctttcg
     5341 gattgtccaa accagtggtt ggcaaccagc tataagtgta aatgggattg ggagctggta
     5401 ttccgatttg tgcggtagaa cctgaacaaa tagtggcgcc attgccggca tcagaatcag
     5461 gcatgtcagt atagatgatg gcattacgaa tagagtgcct gtcatagctg ttgcccgtgc
     5521 ctgcggtaaa cccgaaatat ccggtaaaat taaaggtctg aaatccggaa aggtaaacct
     5581 tgccatcaat ggcgaaggtt atgtttccct tgttgtaatt gatggtggcc ttgtgaaaat
     5641 ttccatcccg gatgaagttg agttcgccgt tgttattgcg aagcgtaggc tgcgtttcat
     5701 tgcattcttt gtagccaaac ccccatctca tttgtaattt gggcacaccg ctcggacaac
     5761 tgttactggg atcaaagcca ttccaataag tatcaatggc aattttcagt ccattggcag
     5821 ct
//
LOCUS       DATIQF010000591         4105 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_161576,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000591 DATIQF010000000
VERSION     DATIQF010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4105
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161576"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..529)
                     /locus_tag="VLL95_09990"
     CDS             complement(<1..529)
                     /locus_tag="VLL95_09990"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HSR39231.1"
                     /translation="MKPNRIILVRHGESEGNLDHNTYAEKQDFKLMLTQAGEAQADEA
                     GKKLQHIIGNERIMFYISPLWRTRLTFEHIAKHFDKEQYRWKEDPRLREQEWGHFRDL
                     KANIQIDAERNKFGTFYYRIKDGESCADVYDRVSDFMHTMYRDFEKHYFPQNVVIVSH
                     GMTIRLFLMRWFHWTV"
     gene            1027..1971
                     /locus_tag="VLL95_09995"
     CDS             1027..1971
                     /locus_tag="VLL95_09995"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: protein motif:HMM:NF002060.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HSR39232.1"
                     /translation="MKFPQPVSTQWIASLIGAELIGDEKAMATGINEIHKVETGDLCF
                     VDHPKYYDTCLKSDASFIIINKAVENSYGKTLLVCEQPFEAYLKIVEHFRPFVPAQSM
                     ISDTAVIGQDSIIMPGVFIGHHVVIGRNCIIHPHVTIYDHTIIGDNVIVHAGTTLGAD
                     AFYYNSKRDREVWYKKMKSCGRVILENDVEIGANCCIDKGVTHDTTIGQGTKLDNLVQ
                     IGHDVVIGKNCIIAAQVGIAGATTIGNGVNLWGQVGVSKTLTIGDGANILAQAGVPSS
                     IEGGKTYWGTPVVEASVKRKELVWIKRIPEIWEKVKNL"
     gene            complement(2037..3011)
                     /locus_tag="VLL95_10000"
     CDS             complement(2037..3011)
                     /locus_tag="VLL95_10000"
                     /inference="COORDINATES: protein motif:HMM:NF013255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HSR39233.1"
                     /translation="MVLVTGGTGLLGTHLILALHQKGIAVKALYRSQIPAEVKDKATW
                     VNADILDVIALEEAMQDVTHVYHVAGYVSFRPQDKAMLHQINVEGTANVVNACLDAGV
                     QKLVHVSSLSALGRIRKNAVIDESMNWTEETSNSEYGKTKYLAELEVWRGMGEGLNAV
                     MVNPTIIIGEHGDWNKGSMKIFQTLYNGFQYYSMGQTGFVDADDVAAAMIRLMDSDIS
                     GQRFIISAENIRYRDFFFMVTDAWGKKRPSVAITPFKAALAWRLYQLKKIFTGKDQLV
                     TRETAATSLAVVSFDNSKLLKAFPDFRYQPIEASVQRICKALQEQSAK"
     gene            complement(3085..3948)
                     /locus_tag="VLL95_10005"
     CDS             complement(3085..3948)
                     /locus_tag="VLL95_10005"
                     /inference="COORDINATES: protein motif:HMM:NF014757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HSR39234.1"
                     /translation="MPFSTIHTICVCGAGTMGSGIAQVAAQAGFRTIQFDVNDEMLHK
                     SKASIEKSLQGLLEKQKISEAERDAILGRIVFTSKIEECIADVVIEAIVEKPEVKLSL
                     FSQLAAINGEDTILASNTSSLSISELQQGVPRPHRFAGMHFFNPATIMKLVEVIKGKQ
                     TDIEVTDTLFALAQKMGKVPVHCNDAPGFIVNHIARPYYLEAMKLVEQGVASIEQVDE
                     IMEATGFKMGPFKLMDLIGMDINYSVSQIVWEALGKPERLKPSVLQQQKVEAGELGRK
                     TGKGFYHYSKA"
BASE COUNT         1054 a          975 c         1004 g         1072 t
ORIGIN      
        1 ccactgtcca gtggaaccac cgcatcagga ataaacgaat ggtcatgccg tgagaaacaa
       61 tgaccacgtt ctgcgggaag taatgctttt caaaatcgcg gtacatggtg tgcatgaaat
      121 cgctgacacg atcatacaca tccgcgcagc tttcaccatc cttgatgcgg taatagaaag
      181 tgccaaactt gttgcgttct gcatctatct ggatgttggc tttcagatcg cggaaatgtc
      241 cccactcctg ctcacgcagc cgcgggtctt ctttccatcg gtattgttcc ttgtcgaaat
      301 gtttggcaat gtgttcaaac gtaagccggg tacgccacag cggtgagatg tagaacatga
      361 tgcgttcgtt gccgatgata tgctgcagtt tctttcctgc ttcatcggcc tgtgcttcac
      421 ctgcttgcgt caacatcaat ttgaaatcct gtttctccgc gtaggtgttg tgatcaaggt
      481 tgccctccga ctcaccgtgt cttaccaata tgattctgtt tggcttcatg atgcttgggt
      541 gtgcatgcgc tgcatacatt tcaaatttag ctgaaatgaa aatgcattgc tgcaatgcga
      601 atgcggaaat aaactagatg attgaagagg atatgtatca aaaggaaatc ccccgatgac
      661 tcgggggatt ttccaacaat gggttagtaa gtactgggat caataattcc cttcacaata
      721 ttagctaaca aacattggta tagaaaaatc catatgcgct tagttattca caatttcaac
      781 atgaatgtga attacactcg tcaacaacaa caatttgaaa tgggaaagga gcataaaggt
      841 aatacagatt gacaaacaaa accgaagcaa aaaatgagaa agcaaattct tcagttgaaa
      901 aatcatgagg tcattgcgcc cggttgttgt ctgttcatgc gctcaacgca tacaacatca
      961 tcacaatgtt tggcaggtgc atttacatag cagccattgc atttactttt gaaaaaattt
     1021 cgccacatga agtttcccca acctgtatca acacaatgga tcgccagcct gattggcgca
     1081 gaattgatag gtgatgaaaa ggccatggcc acgggcatca acgaaataca caaagtggaa
     1141 accggtgatc tctgttttgt agatcatccc aaatactacg acacctgttt gaagagtgat
     1201 gcatcgttca tcatcatcaa caaggcagtg gagaacagtt atggcaagac attgctggta
     1261 tgcgagcagc cttttgaagc ctacctcaaa atagtggaac acttccggcc ctttgtgcct
     1321 gcacaaagca tgatcagcga taccgcggtg atcgggcaag acagcatcat catgccgggg
     1381 gtattcatcg gtcatcatgt ggtgattggg cgcaactgca tcattcaccc gcacgttacc
     1441 atttacgacc acaccatcat tggcgacaat gtgattgtgc atgcaggcac tacgctgggc
     1501 gccgatgctt tttattacaa cagcaaacgc gaccgtgaag tatggtataa gaaaatgaag
     1561 agctgtggcc gggtgatact ggagaacgat gtggaaattg gggccaactg ttgcatcgat
     1621 aaaggcgtaa cgcatgacac cactatcgga caaggcacca aactggacaa cctggtgcaa
     1681 ataggacacg acgtggtaat tggcaaaaac tgcatcatag cggcacaggt tggtattgcc
     1741 ggtgccacca ccattggcaa tggtgtgaac ttgtgggggc aggtaggtgt gagcaaaaca
     1801 ctgaccattg gcgatggggc caacattttg gcacaggccg gtgtgccttc atcaattgag
     1861 ggaggcaaaa cttactgggg cactccagtg gtagaagctt cagtgaagcg caaggaattg
     1921 gtttggatca agcgcattcc tgaaatatgg gagaaggtga aaaacctctg acgaatgatg
     1981 aatgaggaat gatgaattgc gaatgatgca tccattctaa tttcatcaag tgctgatcat
     2041 tttgcacttt gttcttgcag cgctttgcaa atgcgttgta cagaagcttc aatgggttga
     2101 tagcggaagt cggggaatgc ttttagcaat ttgctgttgt cgaaacttac taccgccagg
     2161 ctggtggcgg ctgtttccct ggtcacgagt tgatctttcc ccgtgaatat ttttttcagt
     2221 tggtacaggc gccaggccag tgccgctttg aatggagtga tggctacgga gggccgtttc
     2281 ttaccccatg cgtcggttac cataaaaaag aaatcgcggt atcgtatgtt ttcggcactg
     2341 atgatgaatc gctgcccgga aatatcactg tccatcagtc gtatcatagc agcggctaca
     2401 tcatccgcat ccacaaatcc tgtctggccc atgctgtaat actgaaagcc attgtacagg
     2461 gtttgaaata ttttcatgga gcctttgttc caatcgccgt gttcgccaat gatgatggta
     2521 ggattcacca tcacggcatt caacccttcg cccatgccac gccacacttc cagttcggcc
     2581 aggtatttgg ttttaccgta ttcgctgttg ctggtctctt ccgtccaatt catgctttcg
     2641 tctatcacgg cattctttcg gatgcgaccc agtgcagaca aactgctcac gtgtaccagt
     2701 ttttgcacgc cggcatccag gcaggcattc accacattgg cagtgccttc cacatttatt
     2761 tggtgcagca tcgctttgtc ctgcggacga aagcttacat agcctgccac atgatacaca
     2821 tgcgtcacat cctgcatggc ttcttccagc gctatcacat ccaggatatc tgcattcacc
     2881 caggtggctt tgtctttcac ctctgcaggt atctgcgaac gatacaatgc cttcacagcg
     2941 atgccctttt gatgcaatgc caggataaga tgtgtaccca acaggccggt accgccggtt
     3001 actaatacca tgctgcaata ttagacaaga gtgaagtact aaaagcaaag tgcgaagtac
     3061 gaggtacgaa gtacgaaggg gaaatcatgc tttgctgtaa tggtaaaagc ctttgccggt
     3121 tttgcggccc agttcgcctg cttccacttt ttgttgttgc agtacagaag gtttcaaccg
     3181 ttccggtttg cccagcgctt cccacacgat ctggcttacg ctgtagttga tgtccatgcc
     3241 gatgagatcc atcagtttga agggccccat cttgaacccg gttgcttcca ttatttcgtc
     3301 cacctgttca atgcttgcca ccccttgctc caccaacttc atggcttcga ggtagtaagg
     3361 gcgggcaatg tggttgacga tgaagcccgg cgcatcgttg cagtgtacgg gcaccttgcc
     3421 cattttttgg gccagtgcaa acaaggtgtc cgttacctca atgtctgttt gtttgccttt
     3481 gatcacttcc accagcttca tgatggtggc gggattgaaa aaatgcatgc cggcaaaacg
     3541 gtgcggccgg ggcacgccct gctgcaattc ggaaatggaa agggaagatg tattgctggc
     3601 caaaatggta tcctctccat tgatggcagc cagctggctg aagagggaaa gttttacttc
     3661 cggcttttcc acgatggctt caattaccac atcggctatg cattcctcta ttttgctggt
     3721 aaagacgatg cggcccagga ttgcgtcccg ttctgcttcg ctgatcttct gtttctccag
     3781 cagcccctgc aaactttttt caatggaggc tttgcttttg tgcagcatct catcattcac
     3841 atcaaactga atggtgcgga agccagcttg tgcagccacc tgcgcaatgc cgctgcccat
     3901 ggtaccggcg ccgcatacgc aaatggtatg aatggttgaa aatggcatgg agcaaagaaa
     3961 agaaatgaat gccggtgatc gacaaaagtc gatgaaaaca aatcgtcccc gtcaggagac
     4021 gaggacgatg gataaaacaa atcgtccccg tcggaagacg aggacgatgg aaaaatactt
     4081 gtaagccccc tttagggggt tgggg
//
LOCUS       DATIQF010000592         3469 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_222491,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000592 DATIQF010000000
VERSION     DATIQF010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3469)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3469)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3469
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222491"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1067)
                     /locus_tag="VLL95_10010"
     CDS             complement(<1..1067)
                     /locus_tag="VLL95_10010"
                     /EC_number="3.4.13.19"
                     /inference="COORDINATES: protein motif:HMM:NF013413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070573 - metallodipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HSR39235.1"
                     /translation="MKWLALMLMTAPAMAQTSNKLHQKAIVVDTHNDFPSAAINKGVS
                     LDMSLKGKTHSDLDRLQQGGVDVQIFSIWCDGDKKEPYAWANREIDSVHAWAQRNPQR
                     MMLVGNPKELEQAVRQKKLATMMGVEGGHMIEDDLGKLEALYNRGVRYMTLTWNNSTA
                     WATSALDETKPGFTGKKGLTDFGKAVVKKMNELGMLVDLSHVGEQTFYDAMATTSKPV
                     LVSHSCVHALCPIFRNLKDDQIKAIGKNGGVIHLNFFSGFVDSTFMPRYTAFLTKRKT
                     ELDSLVAANPQIDKDYLEMQLLDKYKEETLALRPTLDQLMDHMDYIVKLVGIDHVGLG
                     SDFDGISSAPQGLDGVENFPL"
     gene            1323..1526
                     /locus_tag="VLL95_10015"
     CDS             1323..1526
                     /locus_tag="VLL95_10015"
                     /inference="COORDINATES: protein motif:HMM:NF022577.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2892 domain-containing protein"
                     /protein_id="HSR39236.1"
                     /translation="MKKNVGSVDRVVRIVLAALFAVLYFTKTVEGTAGMVLLVLGGIF
                     LATSFISFCPLYAIFGINTCPKK"
     gene            1654..>3469
                     /locus_tag="VLL95_10020"
     CDS             1654..>3469
                     /locus_tag="VLL95_10020"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HSR39237.1"
                     /translation="MERSIAFLFSILFFVASNGQPSSRWQSLDSALNALHQTHRFNGS
                     VLYAEKGKVLYQRAFGVADFRTGVPLQPQSAFNLASVTKQFVCMSIMMLKEQGKLQYD
                     DACSKYLPSFTYSHISIRQLMQHTSGLPEYFDLFQSHRTPLDTLDNEKMLSLFATLKP
                     ELEFEPGSNWQYCNTNYVLLVSIAEKITGQPFEVFFQEAIARPLGLRNTYVYDVLMRQ
                     SPANRVLGFEETGETPKLNELTVFDGVVGDGNIYSTTEDLLKWEQSLYGEKLVKQSTL
                     ADAFKPAVLKNGETRPYGFGWGIEDSARKVYAHTGGWVGFANVIYHDVGNQRTLVLLS
                     SGSNGWGIRIARQFMSDKPLVVQPTTLIHNVQLVDGTGMPARKGAVRMEGQRILQVGN
                     LTPYPGETTIDGKGRMLAPGFIDTHSHLEGYLQKAPEALAALNQGITTIISGQDGFSD
                     PVDSLREMIKRKPAAINVATYTGHSSLRERVMGRQQLNRPATAAELKQMQDLLQKDIK
                     AGSLGLSTGLEYEEGFYSSRHEVVELARTASKMSARYISHLRSEDVSLDDALDEIIAI
                     GREAKLPVQISHFKIALKDQWGKAGSYIAQLERARATGV"
BASE COUNT          813 a          858 c          922 g          876 t
ORIGIN      
        1 atcaaaggaa aattctccac accatcgagg ccctgcggcg ccgaactgat gccgtcaaag
       61 tcgctgccca atccaacatg atcaatgcct acaagtttta cgatgtaatc catatggtcc
      121 atcagttgat ccagcgttgg gcggagcgcc agcgtttctt ctttgtattt atcgagcaac
      181 tgcatttcga ggtagtcctt gtctatttgc gggttggccg ctaccaatga atccagttcg
      241 gtctttcttt tggtaaggaa ggcagtgtag cggggcatga atgtgctgtc gacaaagcca
      301 ctgaagaaat tgaggtggat gacgccgccg tttttgccga tggctttgat ctgatcgtct
      361 ttcaggttgc ggaaaatggg acacagcgca tgcacacagc tgtgcgatac cagcaccggt
      421 ttggaagtgg tggccatggc atcgtaaaaa gtttgctcgc ccacatggct caggtccacc
      481 agcatgccca gctcattcat ttttttcacg acagcttttc caaaatcggt gaggcctttt
      541 ttgccggtaa agccgggctt tgtttcatcc agtgccgagg tagcccatgc agtggagttg
      601 ttccaggtga gcgtcatgta gcgaacacca cggttgtaaa gcgcttccag ttttcccaaa
      661 tcatcttcaa tcatgtgacc gccttccacg cccatcatcg tggccagttt tttctgccga
      721 actgcttgtt ccagttcttt gggattaccc accagcatca tacgttgcgg attgcgctgc
      781 gcccatgcat gcacactgtc tatttcgcgg ttggcccatg catagggttc tttcttgtcg
      841 ccatcgcacc aaatgctgaa gatctgcaca tccacgccgc cttgctgcaa gcgatccagg
      901 tcggagtggg ttttgccttt caggctcatg tcaaggctga cgcctttgtt gatggcagcc
      961 gaagggaaat cgttgtgggt atcaaccact attgctttct ggtgaagctt attgctggtt
     1021 tgtgccatag ccggggcagt catcagcatc agggcaagcc atttcatttc gttgtcagtt
     1081 gtttgggcgg aaggtaacgc atccttggcc tatttgtgcc agctaacatg acgaaataca
     1141 ggcccgggag tgatgccagt cactttcgcc cggaggcatg aattactatt ttcaccgaat
     1201 gaattcgaaa tggctacggt tggcaatcgt ttgcgtactg tgcatattaa tggcatgggg
     1261 cattgcatcg ctgatcgaat ggctgaaaca ctaatcaatt ttaaccccca attcattacc
     1321 ccatgaaaaa gaacgtagga tctgttgacc gcgttgtacg cattgtactc gccgcattgt
     1381 ttgcggtatt gtatttcacc aaaacagtag aaggcactgc cggcatggta ttgctggtgc
     1441 tgggcggtat tttcctggcc accagtttca tcagcttttg cccgttgtat gccattttcg
     1501 gaatcaacac ctgccccaaa aaataaatgc atattggttg ctcctggtaa cgaagcggtg
     1561 ctcatggcgc cgcttttttt gtggcctgcc acagcggaaa ttcattgaat ttctgaggcg
     1621 gtcaatgcct atctttccaa caaatcatgc ggcatggaaa ggagtattgc ctttttgttt
     1681 tccatcttgt ttttcgtggc ctccaacggg cagccatcct cccgttggca gtcgctggat
     1741 tcggcgctga atgccctgca tcaaacgcat cgcttcaatg ggtcggtatt gtatgccgag
     1801 aagggcaagg tattgtacca acgagctttc ggggtagcgg atttcagaac cggtgtgcca
     1861 ttgcagcccc agtcggcttt caacctcgcc tcggttacca agcagtttgt ttgcatgagc
     1921 atcatgatgc tgaaggaaca aggcaaactg caatacgatg atgcctgcag caaatacctg
     1981 ccttccttta cgtacagcca catcagcatt cgccaattga tgcagcatac ctccggcctg
     2041 cctgaatact tcgatctttt ccagtcgcat cgcaccccac tcgatacgct ggataatgag
     2101 aaaatgctgt cgctgtttgc caccctcaag cccgaattgg aatttgaacc gggcagtaat
     2161 tggcagtact gcaataccaa ctatgtgttg ctcgtaagca ttgcagaaaa gataaccggg
     2221 cagccgtttg aagttttttt ccaggaagcc attgccaggc cattgggatt gcgcaatacc
     2281 tatgtgtatg atgtactgat gcgccaatca cctgccaacc gggtgctggg ttttgaggaa
     2341 acaggagaaa cgcccaagct gaacgaattg actgtttttg atggcgtggt gggcgatggc
     2401 aatatttatt ccaccaccga agatttgctg aaatgggaac aaagcctgta tggagaaaag
     2461 ctcgttaagc aaagcaccct ggctgatgct ttcaaaccag cggtgttgaa gaatggagaa
     2521 accaggcctt atggttttgg ctggggcatt gaagacagtg cccgaaaagt atatgcgcat
     2581 actggcggct gggtaggctt tgccaatgtg atctatcacg atgtgggcaa ccaacgtacg
     2641 ctggtgttgc tgagctcagg cagcaatgga tggggtattc gtattgcccg ccagttcatg
     2701 agcgataagc cgttggtggt gcagcctacc acactgatcc ataatgtgca gttggtggat
     2761 ggtaccggca tgcctgcccg taaaggcgcc gttcgcatgg aagggcagcg tatcctgcaa
     2821 gtgggcaatc tcacgcccta tcccggtgaa acaacaattg acggcaaggg ccgaatgttg
     2881 gcgccgggct ttattgatac acacagccat ctcgaagggt atttgcaaaa ggcacccgaa
     2941 gcgttggctg cgctaaacca aggcatcact accatcattt ccgggcagga cggtttcagc
     3001 gatcctgtcg acagcctgcg ggaaatgatc aaaagaaagc ctgccgccat caatgtggct
     3061 acgtataccg gtcacagttc gcttcgcgaa agagtgatgg gccggcagca attgaaccgg
     3121 ccggctactg ccgctgaatt gaagcaaatg caggatctgc tgcagaagga catcaaagcg
     3181 ggctcgctgg ggctttccac cggtcttgaa tacgaggaag gtttctacag cagccggcac
     3241 gaagtggtgg aactggccag gacggcttca aaaatgagcg cccggtacat cagccacctg
     3301 cgcagcgaag atgtgagcct ggatgatgca ctggatgaga tcattgccat tgggagagaa
     3361 gccaaattgc cggtgcagat ctcgcatttc aaaattgcat tgaaagacca gtggggcaaa
     3421 gcgggcagct atattgcaca actggaaagg gcaagggcta ccggggtga
//
LOCUS       DATIQF010000593         1615 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_161637,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000593 DATIQF010000000
VERSION     DATIQF010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161637"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1615
                     /locus_tag="VLL95_10025"
     CDS             <1..>1615
                     /locus_tag="VLL95_10025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39238.1"
                     /translation="NTYLGVNHINLVLQDIELSQSPGSKRLLSNVDGYLQLNHPKIRL
                     PSKNSTVEIGQFKADISSRSLYIDSLKLVTGLEKNDPQKVKLSSLDLIDFNWDKFLAT
                     GIIELDSLIVNHGEADINLRKSKNTQRQAQEKKYEGSSFVIHHTFISDIAYKLASVRQ
                     RGKESAFLEMELEGDSLMLENLSILHGRDPAFDVDQLKVTITDLHEHDAENRQRISLG
                     GLTIDKHNLVMSNYLLETNQKDLNRNYFRIAIPRFELNNYLLSELLQGQLAATDMTLS
                     QPDIMVDIRRIKPKQDKPKKDINETITGVTQSISKKVKLGEIVIKDGDFVLLPTLDPK
                     DQVKLTGLSLVIDASKLPEIRSAMDMVHAIKTLNTTGFTVVGKGIKLEVKDMQLRNSP
                     RGIYFGNIRGEFGEGRIIDLKGVTVLNRNLAFDPTQEDGLHISDLLVDSGVVTVRSEL
                     DKEKKVKSKSAAPAIRVDNLDLNNIKFKLSEDHKVGVSASLNIAASDFSLKDNKAYWE
                     TLNVTASNADATFDKTSFGAASMSIEQPGL"
BASE COUNT          506 a          379 c          366 g          364 t
ORIGIN      
        1 aacacttatt tgggcgtcaa tcatatcaac ctggtattgc aggatattga actcagccaa
       61 tcacccggga gcaaaagact gctttccaat gtggacggat acctgcaact caaccatccg
      121 aaaattcgtt tgccatcaaa aaattccaca gtagaaatcg gacagtttaa agccgacatt
      181 tccagcagga gtctttacat cgattcgctg aaactggtaa ccgggctgga aaagaatgat
      241 cctcaaaaag tgaaactctc ttcgctggat ctgatcgact tcaattggga caaatttctc
      301 gctaccggca tcattgagtt ggacagcctc atcgtgaacc atggtgaagc cgacatcaat
      361 ctccggaaat caaaaaatac gcaacgacaa gctcaggaaa aaaaatacga gggaagttca
      421 tttgtcattc accacacttt catttcagac attgcctaca agctggcgtc tgtgcgccaa
      481 agaggaaaag agtccgcttt tcttgaaatg gagctggaag gcgacagcct tatgctggaa
      541 aacttgtcca tcctgcacgg aagggacccc gcttttgacg tagatcaact caaggtcacc
      601 attaccgatt tgcatgaaca cgatgctgaa aacaggcaac gcatcagcct gggtggtctc
      661 accatcgaca aacacaacct ggtgatgagc aactacctgc tcgaaaccaa ccaaaaagat
      721 ttgaaccgca actatttccg cattgccatt cccaggtttg aattgaacaa ctatttactc
      781 tcagagttgc ttcagggaca attggcagct accgacatga cgctttcgca gcctgacatc
      841 atggtagaca ttcgccgtat caaacccaaa caggacaagc ccaaaaaaga catcaacgaa
      901 accatcactg gcgttacaca atccatcagc aaaaaagtga agctgggcga aatcgtcatc
      961 aaagacggcg attttgtatt gctgcctacg ctggatccca aagaccaggt aaagctgaca
     1021 gggctctcgc tggtgattga tgcttccaag cttcccgaaa taagaagcgc catggatatg
     1081 gtgcatgcca tcaagacgct gaacaccaca gggtttacgg tagttggcaa agggataaaa
     1141 ctggaagtga aagacatgca attgcgcaac agcccccggg gtatatattt tggcaacatc
     1201 aggggcgagt ttggcgaagg cagaataatt gacctgaaag gcgtgaccgt tttaaaccgg
     1261 aatcttgctt ttgatcccac ccaggaagat gggctccata tatcagactt gctggtggat
     1321 agcggagtgg taacggtgcg gtcagaatta gataaggaga aaaaggtaaa atccaaatct
     1381 gcggcaccag ctataagagt tgacaatctt gatctgaaca acatcaaatt caaattgagt
     1441 gaagaccaca aagtgggtgt ttcggcttca ttgaatattg ctgcaagcga tttttcttta
     1501 aaagacaaca aagcatattg ggaaacattg aatgtaaccg ccagcaatgc tgatgccacc
     1561 tttgacaaaa ccagttttgg agccgccagc atgagcattg agcagccggg tctca
//
LOCUS       DATIQF010000594         7222 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_70369, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000594 DATIQF010000000
VERSION     DATIQF010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7222
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70369"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            136..672
                     /locus_tag="VLL95_10030"
     CDS             136..672
                     /locus_tag="VLL95_10030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39239.1"
                     /translation="MPAANDNFSVRVKGAFTNTVANAARVNQREWNIVSNSTSAMITL
                     QPGGDGIDPAEEGTWVIGHYKNGAWTETATTEDLQFKANFSSFSPFGAGLAGGFVGGG
                     SITTYTFTGNGNWSDNANWTNNTKPPNTITSAIKVIINPPNDGSCILDVPIMISNGGS
                     ITVNPGKKFVLSSKVKIQ"
     gene            complement(682..1761)
                     /locus_tag="VLL95_10035"
     CDS             complement(682..1761)
                     /locus_tag="VLL95_10035"
                     /inference="COORDINATES: protein motif:HMM:NF020130.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HSR39240.1"
                     /translation="MSIYRSVITGTGAYIPHSIKSNLDFTVHYFYDEHHHRITTPPLE
                     VVNKFKEITGIAERRYADEDMNASDMATLAAREAIANSGVDPETIDQIIVAHNFGNVV
                     KHTIQTDILPALASRVKHNLGIANPACVAYDILFGCPGWVQGVIQADAFFKAGIAKKA
                     LVIGTETLSRVVDVYDRDSMIFSDGAGACIMEYKEVGEDGPGLLSASVASHCLDEAYY
                     LHMGKSYFPGSDPRVRYIKMKGRKVYEYAMQHVPQAMKDCLDKSGADIHQLKKVFIHQ
                     ANEKMDEGIIKRLYKLYNVKDLPEAIMPMSIHLLGNSSVATVPTLFHTVLQGKQEGHH
                     LSAGDIVLFASVGAGMNINAVSYRM"
     gene            complement(1926..3140)
                     /locus_tag="VLL95_10040"
     CDS             complement(1926..3140)
                     /locus_tag="VLL95_10040"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: protein motif:HMM:NF006803.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA];
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HSR39241.1"
                     /translation="MLDSIESAIEDIRQGKLVIVVDDEDRENEGDFVCAARTATPEII
                     NFMTKFGRGLVCAALTAERCEELELVPMVTTNTSLHETAFTVSVDLISDETSTGISAH
                     DRSKTIQALINPATRPADLGRPGHIFPLKAKKGGVLRRSGHTEATVDLSRLAGFEPAG
                     VLVEIMNEDGSMARLPQLTEIAKQWDLKIISIADLIEYRMRQDSLIEEIVRVSMPTIY
                     GDFEMVAFRDKSTDMEHLAIIKGEWQKDEPVLTRVHSSCFTGDILGSLRCDCGDQLAC
                     ALQMVDKEGKGVILYMNQEGRGIGLVNKLKAYKLQEEGADTLEANLMLGLPADARDYG
                     VGAQILRHLGVTKLRLMTNNPKKRAGLLGYGLEIVESVKLEVPSNPHNHDYLVAKRDR
                     MGHDLDVILQIS"
     gene            3425..6721
                     /locus_tag="VLL95_10045"
     CDS             3425..6721
                     /locus_tag="VLL95_10045"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR39242.1"
                     /translation="MMKHLLRLMSVLALVVIANYSGAQVTNSSMTGIVRDPKGQPLEG
                     ATIRAEHQPTGTTYSVYSGKGGRFIIPGMRTGGPYRVQVTFTGLQTSVFEGITLILGE
                     AFDISADLKEQDNMLENVIVTGTSRSKGAIDKTGAATNINNRTITSMPTISRSLTDFT
                     RLTPQSNGNSFGGSDNRFNNIQVDGANLNNNFGLSSDPLPGGGNQPISIDAIEEVSIN
                     IAPYDVRQAGFTGAGINAVTKSGTNKFRGSAYTFYRDESYNGARVGDAKLGAQQATQS
                     NIWGATLGGPIIKNKLFFFGAYEYERRNFPGVQWTPKGGSGIGNVSSISADTLKRFSD
                     FLRNTYGYETGPYDNFPNFGAKNTKILGRIDWNISNQHKLILKYNQMVSNNDVQLNAT
                     STPNGIVTGLQSRFGPNGMSYANSNYGFEDIVRNGTLELNSRFSKKISNQLLATVTNI
                     SAIRTSPSAVFPFIDIRNANGPNTTANISAGYEPFSYNNEVKNDVYSIIDNFTYYAGK
                     HTITAGLSYEYQSIGNMFMPGSQSYYAYNSLQDFISGAAPAAFSTTYSLVAGKSSVFA
                     SQVKVGQLGVYIQDEWVINPQFKLTAGLRVDKFGFPETPIENPAISALQLYSPDGQLR
                     QYKNTVLPSTKPYFSPRVGFRYDVYGNKNLIVRGGTGIFTGRLPYVWVTNITQNSGMY
                     QFGAIVTNAQALQRFTFNPDPNYHINRGDALLPTTAGTSVPGNLVLSDPDFRFPTLWR
                     TNIAVDKDLGKGWSLTFEGLYGKDINAIRMRNANQRPPNGQLVGPDTRSRFISPTDRR
                     LNPQITGSAIILENTDQGNQFNFTAQVNKSFSKGFFGSLAYSYTSAVDVTPNPGSTAN
                     SVWNGNPTRGTQNDLEIGTAPTVLTHRIVGSFSYRKEYLKHLATTVSLYYEGASQGRF
                     SYVVASSGSGANFIDLNNDGNGGVDLLFIPNKASDLTFVNATYGGVTYTPAQQAAAFD
                     AFVNQDAYLSKRRGQYAECNGAQLPWYNRVDFKFVQDIFTSTKGSKNTLQFTADIFNF
                     LNLLNRDWGIRKIVIQNQPLVFAGYNTSGVPTYRMNQFNNQLLTTTYRDNISTGSTWS
                     MQIGLRYMFN"
     gene            complement(6800..>7222)
                     /locus_tag="VLL95_10050"
     CDS             complement(6800..>7222)
                     /locus_tag="VLL95_10050"
                     /inference="COORDINATES: protein motif:HMM:NF044671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39243.1"
                     /translation="IVRCTGYEKDEQGKLTKVLAEYIPESKSGSDTSGINVKGTIHWI
                     SAEHAVVAEVRLYDRLFKVEDPSSEEGDFKDYINADSLQIIEHAYIEPELLKAQLGEQ
                     FQFLRKGYFTLDSVHSTPNKLVFNRTVSLKDNWAKSAK"
BASE COUNT         1829 a         1909 c         1651 g         1833 t
ORIGIN      
        1 ggaggaggtg atggcgcact taattcacag ttcataacca atggtacagg atacctgata
       61 gtaccaattg cctccggcgt ttggcgaaat ttgcctgttt cagtctcaga tcaaagctca
      121 gatgctgttt caatcatgcc agctgcaaat gacaactttt cagtaagagt gaaaggtgcc
      181 ttcaccaaca cggtagccaa tgccgccaga gttaaccagc gtgaatggaa tatcgtaagc
      241 aattctacca gtgccatgat aacattgcaa cccgggggcg acggcatcga ccctgccgaa
      301 gaaggcacct gggtgatagg gcattacaag aacggggcat ggactgaaac cgcaactacc
      361 gaggatctgc aattcaaagc taatttcagt tccttttcac cttttggtgc ggggttggct
      421 ggtggcttcg tgggtggcgg cagcattacc acttacacat tcactggcaa tggcaactgg
      481 tcggacaatg ccaactggac caataatacc aaaccgccta acaccatcac cagcgccatc
      541 aaagtcatca tcaatccgcc gaatgatggc agctgcatcc tggatgttcc gattatgatt
      601 tcaaacgggg gcagtattac tgtaaacccc ggaaagaaat ttgtgttgag cagtaaagta
      661 aaaattcaat aattgaagaa gttacatcct gtaactcacg gcattgatgt tcatacccgc
      721 ccctacagaa gcaaacagga ctatatcacc cgcagacaag tgatgcccct cctgcttgcc
      781 ttgcagcacc gtatgaaaca atgtgggcac cgttgccact gaactattgc cgagcaaatg
      841 aatgctcata ggcatgatgg cttcaggcaa atccttgaca ttatacaatt tgtaaaggcg
      901 tttgatgatg ccttcgtcca ttttttcgtt ggcctggtga atgaacactt ttttcaactg
      961 gtggatatcc gctccgcttt tgtcgaggca atctttcatg gcctgtggca catgctgcat
     1021 cgcatattcg taaaccttgc ggcctttcat ttttatatat cgcacccttg gatcgctgcc
     1081 cgggaagtat gatttgccca tgtgaaggta ataggcttca tccaggcaat gcgaggcgac
     1141 actggcgctc aacaggcccg gcccatcttc accaacctct ttatactcca ttatgcaggc
     1201 ccccgcgcca tcactgaaaa tcatgctgtc acgatcgtat acatccacta cacggctcaa
     1261 tgtttcggta ccaatgacca atgctttttt agcaatgcct gctttaaaaa acgcatcggc
     1321 ctgtataacc ccttgtaccc aacccgggca tccaaacaaa atgtcgtatg ccacgcaggc
     1381 aggattggca ataccgaggt tgtgtttcac acggctggca agagcaggca gaatatcggt
     1441 ttgaatggta tgctttacca cgttgccaaa attgtgcgcc acaatgatct ggtcgatggt
     1501 ttccggatcg acgccgctgt tggcaatggc ttcgcgggct gccaaagtgg ccatgtcaga
     1561 tgcattcatg tcttcatccg cataccttct ttccgcaatg cctgttattt ctttgaactt
     1621 gttcaccact tccaggggag gcgtagttat gcggtgatgg tgttcatcat agaaataatg
     1681 gactgtaaaa tcgaggttgg attttatgct gtgcggaatg taagctccgg ttccggtaat
     1741 tactgacctg tatatgctca tgtcaaaatt gttgccggct aagctaacta taatagcgat
     1801 gcttttgcct ttgtcgaaag agtatttagg tttttagaaa aatgtgttcg gccctgtgtg
     1861 ttgtactggt gcaaaaaaaa ctgcctcacg gcagttttcg ggcaaatatt gtagagataa
     1921 tttaatcagg atatctgcag gataacatca aggtcgtgcc ccatcctgtc gcgtttggcc
     1981 accaggtagt cgtgattgtg cgggttggat ggcacttcca gtttcacaga ttcaacaatc
     2041 tccaacccat aacccagcag cccagcccgc tttttggggt tgttggtcat cagccgcagc
     2101 ttggtaactc ccaggtggcg caggatttga gcccctaccc cataatcacg ggcatctgcg
     2161 ggtagcccca gcatcaggtt ggcttccagt gtatcggcac cctcttcctg caacttgtag
     2221 gccttcagtt tgtttaccag tccaatgcca cgcccctcct ggttcatgta cagaatcact
     2281 cctttccctt ctttgtctac catttgcagg gcgcaggcca gctggtcgcc gcaatcgcag
     2341 cgcaagctac ccagtatgtc gccggtaaaa cagctggagt gcacccgggt aagcaccggc
     2401 tcatcttttt gccattcccc tttgataatg gccaggtgct ccatgtcggt gcttttgtcg
     2461 cggaaggcca ccatttcaaa atcaccataa atggttggca tgcttacccg cacaatttcc
     2521 tcaatcaatg aatcctggcg catcctgtat tcaatgagat cggcaatgga tatgattttg
     2581 aggtcccatt gtttggcgat ctcggtcaat tggggcaggc gggccatgct gccatcttca
     2641 ttcataattt ccaccaacac tcctgcgggt tcaaatccgg ccagcctcga aaggtccacg
     2701 gttgcttcag tgtggccgct tctccgcaga accccgcctt tttttgcctt gaggggaaaa
     2761 atatgaccgg gtcggccaag gtcagctggc cttgtagcag ggttgatcag cgcctgtatg
     2821 gttttggagc ggtcgtgggc cgaaatacca gtactggttt catcgctgat caaatcaaca
     2881 gaaaccgtaa aagccgtttc gtgcagtgaa gtattggtgg taaccattgg caccagttcc
     2941 aactcttcac agcgttcggc cgtaagtgcg gcacacacaa gtccccggcc aaacttggtc
     3001 atgaaattga tgatttccgg tgtggccgtg cgggcagcac atacaaaatc gccttcgttt
     3061 tctcggtctt catcatccac cacaatcacc agtttgccct ggcgaatgtc ctctatcgca
     3121 ctttcaatcg aatccagcat gatttcagta tttggttgca aaactacaag gttaggcttc
     3181 atttggtttg aattcctcat ttcaactcct ccttggctga tcaacccgca tcctggagac
     3241 acaaaaacag cccccggcat cgcctcccgc ccttatgtgc tcagggggcc gcaccgacga
     3301 ataaaccaat tcgcctgttg ggtgttttat tcccggaaaa ggctgcagta attgttaaca
     3361 aatcgggata gttacaacag ccaaacctgc atctttgtat gcgtaaataa aatcccaaac
     3421 tgctatgatg aaacatttac tgcgactgat gtcggtgttg gcattggtgg tgattgccaa
     3481 ttattcaggg gctcaggtta ccaatagttc gatgactgga attgtcagag accccaaagg
     3541 gcagccattg gaaggggcca ccatcagggc cgaacaccag ccaactggta ccacttattc
     3601 tgtctattca ggtaaaggag gacggttcat aattccgggc atgcgcaccg gcggccctta
     3661 cagggtacag gtcaccttta caggtttgca aaccagtgta ttcgaaggca ttacgctgat
     3721 acttggtgaa gcttttgaca tctccgcaga tctgaaggag caggacaaca tgcttgaaaa
     3781 tgtcatagta accgggacca gccgcagcaa aggtgcgatt gacaaaactg gtgccgccac
     3841 caacatcaac aaccgtacca tcacttcgat gcccaccatc tcccgcagtc ttaccgactt
     3901 tacccggttg acgccacagt cgaacggcaa tagtttcggt ggcagcgaca accgcttcaa
     3961 caacatccag gtagatggtg ccaacctcaa caacaacttt ggcctgagca gtgatccact
     4021 tcccggtgga ggcaaccagc cgatttcaat tgacgccatc gaagaagttt ctatcaacat
     4081 tgcgccttat gatgttcgcc aggcaggctt taccggtgcc ggcatcaacg ccgttaccaa
     4141 gagtggcacc aacaagttca ggggttcggc ttacaccttt taccgcgatg agagctataa
     4201 tggtgcccgt gtaggcgatg ccaaactggg agcacagcaa gccacgcaaa gcaatatttg
     4261 gggtgctacc ctgggtggcc ccatcatcaa aaacaaactc tttttctttg gcgcttacga
     4321 gtatgaaaga agaaattttc ccggtgtaca atggacgccc aaaggaggct caggcatcgg
     4381 aaacgtttcg agcatcagtg ccgatacact gaaacgtttc tctgattttc tgcgcaacac
     4441 ttatggctac gaaaccggcc cctatgacaa cttcccgaat ttcggagcca aaaacaccaa
     4501 gatcctgggg cgtatcgact ggaacatcag caaccagcac aaactcatcc tgaagtacaa
     4561 ccaaatggtg agcaacaatg acgtgcaatt gaatgccacc agtactccta atggcattgt
     4621 caccggcctg caatcccgct ttggccccaa tggcatgtcc tacgcaaaca gcaactacgg
     4681 atttgaagac atcgtaagga acggaacgct tgaattgaac agccgcttta gcaaaaagat
     4741 cagtaaccaa ttgctggcta ccgtaacaaa catcagcgca atacgtactt ctcccagtgc
     4801 agtattcccc ttcatagata ttcgcaatgc caatggaccg aacactactg ccaatatcag
     4861 tgctggttac gagccattct cttacaacaa cgaggtgaaa aatgatgtat acagcatcat
     4921 cgacaacttc acctactatg caggcaagca taccattacc gccggcctga gctacgaata
     4981 ccagagcatt ggcaatatgt tcatgcctgg ttcgcagagc tattatgcct acaattcatt
     5041 gcaggatttc atcagcgggg ccgcgccggc agctttctcc actacctatt cactggtagc
     5101 cggaaaatct tccgtttttg cctcacaggt gaaagtggga caactgggtg tttacatcca
     5161 ggatgaatgg gtgatcaacc cgcagttcaa actcactgcc ggcttacgcg tcgacaaatt
     5221 cggattccct gaaacaccga ttgaaaaccc tgccatcagc gcattgcagc tgtatagccc
     5281 cgatggtcaa ctgcgccaat acaaaaacac agtactgccc agcaccaagc catacttctc
     5341 tcccagggtt ggcttccgct acgatgtgta tggcaacaag aacttgatcg taagaggtgg
     5401 taccggcatc tttacgggtc gcctgcccta tgtatgggtt accaacatta ctcagaacag
     5461 cggcatgtac cagtttggag ccatcgttac aaatgcccag gcattgcagc gctttacttt
     5521 caatcctgat ccgaattacc acatcaaccg tggcgatgca ttgctgccta ctacagcagg
     5581 cacttcagtt cccggcaacc tcgttctcag cgatcctgat ttccgcttcc ccactttatg
     5641 gcgtaccaac attgccgtag ataaagacct gggcaaaggc tggagcctca cttttgaagg
     5701 tctttatggc aaagacatca atgccattcg catgcgcaat gccaaccaaa gaccacctaa
     5761 tggtcaactg gttggacctg atacacgaag tcgttttatt tccccaaccg atcgccggtt
     5821 gaacccccag atcacaggct cagccatcat tctggaaaac acggaccagg gtaatcaatt
     5881 caacttcacc gcacaggtta ataagagctt tagcaaaggc ttctttggtt cactggcata
     5941 ttcatacacc agtgctgtgg atgtaactcc caacccgggc tctactgcca actcagtttg
     6001 gaacggcaac cccacccgtg gcacgcagaa cgaccttgaa ataggcactg cccccactgt
     6061 gcttactcac cgcattgttg gttcattctc ttaccggaaa gaatacctga aacatttggc
     6121 aacaacagtc tctctgtatt atgaaggagc cagccaggga cgtttcagtt atgttgttgc
     6181 aagcagcggc tcaggggcta attttattga cctcaataat gatggtaacg gtggtgttga
     6241 tttgcttttc ataccaaaca aagctagcga tctcacattt gttaatgcca catatggagg
     6301 agttacctat acacctgccc agcaagcagc cgctttcgat gcgtttgtaa accaggatgc
     6361 ttacctcagc aagcgccgtg gccagtatgc tgagtgtaat ggcgcccaac tgccctggta
     6421 caaccgcgtt gacttcaagt tcgtgcagga catcttcacc agtacgaaag gatctaagaa
     6481 cacgttgcag tttactgccg acatcttcaa tttcctgaac ctgctcaacc gcgattgggg
     6541 tattcgcaaa atcgtgatcc aaaaccaacc gttggtattt gccggttaca acacttcggg
     6601 tgtacccacc taccgcatga accagtttaa caaccagttg ctcaccacta cctacaggga
     6661 taacatctct acaggaagta cctggagcat gcaaattggt ttgcgctaca tgttcaacta
     6721 aggatcttaa gtattcagca taaaaaaggt tgtccgatct ggacaacctt tttttatgct
     6781 attcatcgaa cttaaaaaat catttggctg attttgccca gttgtctttg agcgacacgg
     6841 tgcgattgaa caccagtttg tttggcgtac tgtgcaccga atcgagtgta aagtatcctt
     6901 tgcgcaaaaa ctggaattgc tcacccaatt gcgctttcag cagttcgggc tctatgtagg
     6961 catgctcaat gatctgcagg ctgtcggcat tgatgtaatc cttgaaatca ccctcttcgc
     7021 tggaagggtc ttccacttta aacaatcgat cgtacaggcg aacttccgcc accacagcgt
     7081 gctcggcgct gatccagtga atggtgcctt ttacattgat gccgctggta tcgctgccgc
     7141 ttttgctttc gggaatgtat tccgccagca ctttggtcag tttgccttgt tcgtcttttt
     7201 cgtagccggt gcagcgtacg at
//
LOCUS       DATIQF010000595         9264 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_252790,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000595 DATIQF010000000
VERSION     DATIQF010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 9264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9264
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252790"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..214)
                     /locus_tag="VLL95_10055"
     CDS             complement(<1..214)
                     /locus_tag="VLL95_10055"
                     /inference="COORDINATES: protein motif:HMM:NF015666.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HSR39244.1"
                     /translation="MKIAVIGTGYVGLVTGTCFSETGNTVTCVDIDENKIQKLKGGTI
                     TIYEPGLEKLFERNLKEGRLKFTTSLQ"
     gene            complement(263..1393)
                     /locus_tag="VLL95_10060"
     CDS             complement(263..1393)
                     /locus_tag="VLL95_10060"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HSR39245.1"
                     /translation="MNPIQMVDLRTQYHNIKAEVDKAVLDVLESSAFINGKPVADFAS
                     ELSAFLGVKHVIPCANGTDALQIAMIALGLEPGDEVITPSFTYVATTEVVALLRLTPV
                     FVEVDPNTFCMDPQKLEAAITPRTKAIVPVHLYGHAADMDPILAVAKKHNLFVVEDTA
                     QAIGGSYTSADGTKRMVGTLGTIGCTSFFPSKNLGCYGDGGAIFTNDDDLAQKMRMIA
                     NHGQSVRYYHDMVGCNSRLDTIQAAILRIKLARLNEYNAARSAAADYYDALFANHPKI
                     TTPYRAPYSKHVFHQYTLKLEGVDREGLVNYLADHGIPSMIYYPVPAHRQKMFANWGG
                     SKFDLPVTDWLTERVISLPIHTELTKEQQDFIGSKVLEFVSR"
     gene            1536..2828
                     /locus_tag="VLL95_10065"
     CDS             1536..2828
                     /locus_tag="VLL95_10065"
                     /inference="COORDINATES: protein motif:HMM:NF016311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase N-terminal domain-containing
                     protein"
                     /protein_id="HSR39246.1"
                     /translation="MGLLIYNTFLLLYGAAARLLSLFSPKTKLWVEGRRQWKRQWQEK
                     LQQAGIGPGDTVVWMHASSLGEFEQGRPLIEALKREHPGTRIVVTFFSPSGYEARKHY
                     TGADVLGYLPFDNQRDARHFVAMIHPALVLWIKYEYWYYILRILRDQQIPVVLVSGIF
                     RAGQPFFRWYGALHRQMLGFFSHLFVQNEESATLASRIIDSNRISISGDTRFDSVLEV
                     ARNWQPNALVEKWLADAQKVVVAGSTWSQDEEEIVHYARTNPEVKWIIAPHNLEQNVM
                     NDTLRLFQHPVQYSQLAAGNAAANPALPNVLIIDNIGMLRYLYNYATVCYVGGGFTGD
                     GVHNVLEAAVYAKPVIHGPEYEKYIEAVGLLEAGGSFEFESGLELEELLGKLWNDKHL
                     ITIAGSAAGQFVKTKAGAADRILQWIQLNRLLTRSKNR"
     gene            complement(2789..3778)
                     /locus_tag="VLL95_10070"
     CDS             complement(2789..3778)
                     /locus_tag="VLL95_10070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39247.1"
                     /translation="MDPIKTLIQQLMDAANSGEDKRVLLALVEELRNALNNASVSSAV
                     PDSVSVVMPNGFHTAFQPAAQPKPAIKPQFSVPRPPTVVVVEEEPVAKTPETIVALPS
                     EPERAPEPEPAPVIENVVESPVLDLFDFDVEEVEEKAMEFPEVNEVETVAPVENLVEI
                     DTTVPAPVQEIQAPVMNMELLLTPEMIAEAVALEMQALNPVEEPEWNEPQAIAKHGEA
                     PKDLNEKMAQRSKMLNEVFVQKEPELVEVLAKPRIADLRKSISINEKYQFIGSLFRGD
                     EDMFERSIKTLNNFTVLQEAQYWMQRELIIKLGWNDEDELVQRFFDLVSRRFN"
     gene            3863..4456
                     /locus_tag="VLL95_10075"
     CDS             3863..4456
                     /locus_tag="VLL95_10075"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: protein motif:HMM:NF003296.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004797 - thymidine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HSR39248.1"
                     /translation="MFIEPTLTSDKKGWIEVICGSMFSGKTEELIRRLKRARIANLRV
                     EIFKPAIDVRYDEVQIVSHDANAIQSTPIDNSQKILLLANDVDVIGIDEAQFFDDQIV
                     HVCQELANRGTRVIVAGLDMDYMGQPFGQMPFLLSIADYITKLHAICVECGTIASFSY
                     RIGKSDQQILLGEKDEYQPLCRKHYYEKMNHNPNPSS"
     gene            4453..5112
                     /locus_tag="VLL95_10080"
     CDS             4453..5112
                     /locus_tag="VLL95_10080"
                     /inference="COORDINATES: protein motif:HMM:NF015344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015232 - heme transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HSR39249.1"
                     /translation="MKTSAIITLLKKDLQLELRQQQNLYGILIYALSTIFILYLSAGQ
                     PDATQWNALFWITQLFVVVNAVIKSFVEEPGGRALYYYTIAHPLEYLFSKMILNTIYM
                     VLLGLVSSFIFRFLLGNPVQNSMAFAGIVILGGIGLSLVFTMLSAIASKARQQASLVA
                     ILGFPVIIPQLVLLIRLSKHAYGEVFKSGAVWQLTGLLAGLDVLVIIMAAVLFPYLWK
                     D"
     gene            5159..6352
                     /locus_tag="VLL95_10085"
     CDS             5159..6352
                     /locus_tag="VLL95_10085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39250.1"
                     /translation="MVSSIREAFNASFTREKYDDFLKDMDSAHPGEIEFRVAETPVFI
                     DKAFAAKVIKACEDIVDVIVRPDFKQLTERAIPPQDHIPGEDDHTQFIAFDFGICENE
                     DGTYVPQLIEMQGFPTLFAYQVWHTDVTRRHFSIPENFDSYLNGFTRESYLEMLRQII
                     INDKPVEEVILLEIYPDQQKTRIDFRCTKELIGIETVCLTKLRANGRELFYEKADGSM
                     QKISRIYNRLIFDDLDKQQLPEGTINIRSDWDVEWCPHPHWFYRISKYTLPFIQSEFV
                     PETRFLSELPVLPSNLNDYVLKPLFSFAGQGVIIDVTPEDIAAVTDPENWILQRKVKY
                     ADVIQTPDVPAKAEIRIFYFWPKGSARPIPAQNLARLSKGKMIGVRYNADKEWVGGSQ
                     VYFEK"
     gene            complement(6410..7672)
                     /locus_tag="VLL95_10090"
     CDS             complement(6410..7672)
                     /locus_tag="VLL95_10090"
                     /inference="COORDINATES: protein motif:HMM:NF019292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside recognition domain-containing
                     protein"
                     /protein_id="HSR39251.1"
                     /translation="MALNYVWIAFFLIGLVVALFKLIFLQDYDIFKKLVDGIFDASKS
                     SVMDVALPLTGVMVFFMGLMNIGEKAGAVNFLARLLNPFLKRLFPGVPDRHPAMGQMV
                     MNFSANMLGLDNAATPFGLKAMESLQTLNPNKDTATNAQIMFLVLHTSGLTLLPLSIF
                     AYRAGAGSIDPTSVFIPCVLGTIITTVASIIVTGLWQRLKFDLVLAGWIIGILAAVIG
                     FMLFISILPAQKDLAEETFLTRETFSKVFGNLLLFLIVATFITGGFIRKINVFDAFIE
                     GAKGGWEVIVRIIPYLVGMLVGIRVFRESGALDFIINGFSWVFTAMGVGTDFVPALPV
                     AIMKPFSGSGARGLMLDLFKTHGPDSFVGKMASTFQGSADTTVYILALYFGSVGIRKV
                     RYAIWAGLIADFIGVIAAVIIAYFFFIR"
     gene            8032..9132
                     /gene="ychF"
                     /locus_tag="VLL95_10095"
     CDS             8032..9132
                     /gene="ychF"
                     /locus_tag="VLL95_10095"
                     /inference="COORDINATES: protein motif:HMM:TIGR00092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HSR39252.1"
                     /translation="MALQAGIVGLPNVGKSTLFNAVSNSAKAQASNYRFCTIDPNVGL
                     VDVPDKRLDKLSELVNPQRVVPTQIEIVDIAGLVRGASKGEGLGNKFLANIREVDAII
                     HVVRCFEDENVLREEGAINPIADKEIIDTELQLKDLESVEKKIARIEKQAKAGDAKLK
                     AELEVLLLCKNHLEQGKNIRELGLGNEQVGAIADLFLLTSKPVLYVANVDEASMHTGN
                     KYSDLLKEVAVREGAQLIIMNNSIEAQITEMEDPEVKQLFMEEYHMEEPALHRLIRSV
                     YKLLKLSTYFTAGEKEVRAWTIHEGWKAPQAASVIHTDFEKGFIKAEVIAYDDFVKHG
                     SEAACRDNGRLRIEGKEYLVKDGDIMHFRFNV"
BASE COUNT         2441 a         2284 c         2251 g         2288 t
ORIGIN      
        1 cctgcaaact ggtggtgaat ttcaggcggc cttctttcag gtttcgctca aacagtttct
       61 ccaatccagg ctcataaatg gtgatggttc cacctttcaa tttctggatc ttgttttcat
      121 caatatccac acaggtcacg gtattccctg tttctgaaaa acaggttcct gttaccaatc
      181 ccacataacc tgttccaata actgcaattt tcataatgga tgtgtgctaa gtatgtataa
      241 ataaaatagg aacgaatcag aatcagcggc tgacaaattc aagcactttg ctgccaataa
      301 aatcttgttg ctctttggta agttccgtat gtatcggtaa tgatatcact ctttcggtaa
      361 gccagtcagt tacgggcaaa tcgaatttgc tgccacccca atttgcaaac attttttgcc
      421 ggtgagccgg tacgggatag tagatcattg atggtatgcc atgatcagcc aggtaattca
      481 ccaagccttc gcgatctact ccctccagtt tcaatgtgta ttggtgaaac acatgcttgg
      541 aatatggcgc ccggtacggg gttgtgattt taggatggtt ggcaaacaat gcgtcgtaat
      601 aatcagcagc tgccgaacgg gcggcgttgt attcattcag ccgggccagc ttgatgcgaa
      661 ggatagctgc ctggatggta tcgagcctgc tgttgcagcc caccatgtcg tggtagtagc
      721 gaacactttg accatggttg gcaatcatgc gcattttttg ggccaggtca tcgtcgttgg
      781 taaaaatggc accgccatcg ccgtaacacc ccaggttttt gctggggaaa aagctggtgc
      841 aaccaatagt acccaaagta cctaccatac gtttagtgcc gtcggcagaa gtgtagctgc
      901 cgccaatggc ttgtgcggta tcctccacca cgaaaagatt gtgctttttg gcaaccgcca
      961 aaatgggatc catatcagca gcgtgcccgt acaaatgaac cggcactatg gctttggtgc
     1021 gaggggtaat ggctgcttcg agtttttggg gatccatgca aaaggtattc ggatccactt
     1081 ccacaaacac cggtgtcaaa cgcagcaatg ccaccacttc tgttgtggcc acataagtga
     1141 aagacggtgt gatgacctca tcacccggtt ccaggcctag cgctatcatc gctatttgca
     1201 aagcatcggt gccattggca cagggaatta cgtgcttaac gcccaggaaa gcagacaatt
     1261 cggaagcgaa atctgccacc ggcttgccat taataaaggc agaagactcc agtacatcca
     1321 gcaccgcctt gtcaacttcc gccttgatat tgtggtattg cgtacgcaaa tccaccattt
     1381 gaatgggatt cataagggtg tgtttagcgg gcgcaaacct acactaattt gccctacaat
     1441 ccttcctggg tactcgccac cactgtggaa aaggattgcc ctcattttag gcctgctttt
     1501 ttacagtcgt tagctttggc tcaaatcggt tccttttggg tttactcatc tacaatacat
     1561 tccttttgct ttatggggct gcagcccggt tgctgagcct tttcagccca aagaccaaac
     1621 tgtgggtgga aggtcgccgg caatggaaac gccaatggca ggaaaaatta caacaggctg
     1681 gcattggccc cggggacacc gttgtttgga tgcatgcctc ctcgctgggg gaatttgaac
     1741 aggggcgccc ccttatcgag gctttgaagc gggagcatcc tggcaccagg attgtggtca
     1801 ctttcttttc gccttccggc tatgaggccc gcaagcacta taccggcgcc gacgtactag
     1861 gctacctgcc cttcgacaac caacgggacg cccgacattt tgtggcgatg atccaccctg
     1921 cgctggtgct atggatcaaa tacgaatact ggtactatat actgcgcatt cttcgggatc
     1981 agcaaattcc ggtggtgctt gtgagcggta ttttccgagc cggtcagccc tttttccggt
     2041 ggtacggtgc gctgcaccga caaatgctgg gcttcttcag ccacctgttt gtgcagaacg
     2101 aagagtcggc caccctggca tcgaggataa ttgacagtaa caggatcagc atttccggag
     2161 acacccgttt tgacagcgtc ctggaagtag cccgaaactg gcagcccaat gccttggtag
     2221 aaaaatggct ggccgatgca caaaaagtag tggtggctgg cagcacatgg tcgcaggatg
     2281 aggaagaaat agtgcattat gcccgcacca atcccgaggt taaatggatc attgccccgc
     2341 acaacctgga gcagaatgta atgaatgata ccttgagatt attccagcac ccggtgcaat
     2401 attctcaact cgcagcagga aatgccgctg caaatcctgc cctgcccaat gtgctgatca
     2461 ttgacaacat tggcatgctc cgctacctgt acaactatgc cacggtttgc tatgtgggtg
     2521 gcggatttac cggggatggt gttcacaatg tgctggaagc ggcagtgtac gccaaaccag
     2581 tgatacacgg acctgaatac gaaaagtaca tcgaagccgt tgggcttctg gaagccggtg
     2641 gcagttttga attcgaaagt ggtttggagt tggaagaact gctggggaaa ctgtggaacg
     2701 acaaacactt aataacaata gccggctcag cagctggtca atttgtaaaa accaaagccg
     2761 gagcggcaga ccgcatcctg caatggattc aattaaaccg cctgctcacc aggtcaaaaa
     2821 accgctgaac caattcgtcc tcgtcgttcc atcccaattt gataatgagt tcacgctgca
     2881 tccagtattg ggcttcctgc aacactgtga agttgttcag cgtcttgatg ctacgttcaa
     2941 acatatcctc atcgcccctg aacagggagc cgataaactg gtacttttca ttgatcgaaa
     3001 ttgatttccg taaatcggct atgcggggtt ttgccagcac ttccaccagt tcgggttcct
     3061 tctgaacaaa aacctcgttc agcattttgc tgcgctgcgc cattttttca ttcaggtctt
     3121 tcggggcttc cccatgtttg gcgatggctt ggggttcgtt ccattcaggt tcctccacag
     3181 gattgagtgc ctgcatttcc agggccaccg cttcggctat catctcaggc gtcagcaaca
     3241 attccatgtt catgacgggc gcttgaattt cctggaccgg cgcaggtact gtcgtatcaa
     3301 tttcaaccag gttttctacc ggtgccactg tttccacctc gttcacctca ggaaactcca
     3361 ttgccttttc ctcaacttct tcaacgtcaa aatcgaacaa atccagaacg ggtgattcaa
     3421 cgacattttc aatgacggga gccggctctg gctctggtgc tctctcaggt tctgagggca
     3481 aagcgacaat ggtttccggc gttttagcaa caggctcctc ttctaccact accacagtgg
     3541 gtggccgggg aacagaaaac tggggcttaa tggcaggctt tggttgcgca gccggttgga
     3601 aggcagtatg aaaaccgttt ggcattacga ccgatacaga gtcgggcaca gccgaactta
     3661 ccgaagcatt gttcaatgca tttctcaatt cttccaccaa ggcaagcagc actcttttat
     3721 cttcgccgct attggcagcg tccattaatt gttgaatcag tgtcttaatg gggtccataa
     3781 acaagggttt ccgttttaag cctgcgaatt ccataaagtt agaggggcgc ataaacttgg
     3841 aacgtaacag acttattaac agatgttcat tgaaccaact ttaacaagtg ataaaaaggg
     3901 ctggatcgaa gtgatttgcg gcagtatgtt cagcggtaaa acggaagaat tgattcgccg
     3961 cctgaagcgt gcccgcatcg ctaatcttcg cgtcgaaata ttcaagccgg ccattgatgt
     4021 gcgctacgat gaagtgcaga tcgtaagtca tgacgccaat gccattcagt caacgcccat
     4081 cgacaattca caaaaaatat tgttgctggc caatgatgta gacgtaatag gtatagacga
     4141 agcgcagttt ttcgatgacc agattgtgca tgtttgccag gagctggcca acaggggcac
     4201 ccgggtaatt gtagcaggcc ttgacatgga ctatatggga cagccctttg gccaaatgcc
     4261 cttcctgttg tccattgccg actacattac caaactgcac gccatttgtg tagaatgcgg
     4321 caccatcgcc agtttcagct atcgcatagg aaaaagtgac cagcaaatat tgctgggcga
     4381 aaaggacgaa taccagccgc tgtgccgaaa gcattattat gaaaagatga accacaaccc
     4441 gaacccttca tcgtgaaaac aagcgccatc ataactctgc tcaaaaaaga cctgcaactc
     4501 gaactgaggc agcagcagaa cctgtatggt atcctgattt acgctctcag caccattttt
     4561 attctttacc tctcagcagg tcagccggat gctacccaat ggaatgcact gttctggatc
     4621 acccagctct ttgtggtggt caacgcagtg ataaaatcat ttgtggaaga acccggtggc
     4681 cgtgcactct attattacac catcgcccat cccctggaat acctgttttc aaaaatgatc
     4741 cttaacacca tctacatggt gctgctgggc ctggtcagtt ctttcatctt tcgttttctt
     4801 ttgggcaacc cggtacaaaa ttccatggcc tttgccggaa tcgtgatttt aggtggcata
     4861 gggttatcgc tggtgtttac catgctcagt gccattgcat ccaaagcacg acaacaggcc
     4921 agcctcgtgg caatacttgg atttcctgta atcataccac aactcgtgct cctcatcagg
     4981 ttgtcgaaac atgcctatgg cgaagtgttt aagtccggtg ctgtatggca actgaccggg
     5041 ctgctggctg gccttgatgt gcttgtaata attatggctg ctgtgttgtt tccctatttg
     5101 tggaaggact aaattcactt tcattctgta tttcaatttc agtatcaacc taacacatat
     5161 ggtatcctcc attcgagaag cttttaatgc ctcattcacc cgggaaaaat atgatgattt
     5221 tttaaaggac atggacagcg cccatcctgg cgaaattgaa ttcagggtgg cagaaacacc
     5281 ggttttcatc gacaaagcat ttgcagcgaa agtcattaaa gcctgcgagg atattgtgga
     5341 cgtaattgtg cgccccgatt tcaaacaact gaccgaaaga gccatcccgc cgcaagacca
     5401 cattcccggt gaagacgacc atactcaatt catcgctttt gattttggca tttgtgaaaa
     5461 cgaagacggt acttatgttc cgcaattgat agaaatgcag ggcttcccga cactgtttgc
     5521 ctaccaggtt tggcataccg atgttacccg caggcacttc agcattccgg agaatttcga
     5581 cagctatctc aatggcttta ccagggaatc ttatctcgaa atgctcaggc agatcatcat
     5641 caacgacaag ccggttgaag aggtgatcct ccttgaaata tatcccgacc agcagaaaac
     5701 gaggattgac ttcaggtgca ccaaagaatt gattggaata gaaaccgttt gcctcaccaa
     5761 actgcgggcc aatggacgag agctcttcta tgaaaaggca gatgggtcaa tgcaaaagat
     5821 cagccgcatt tacaaccggc tcattttcga tgatctcgac aagcagcaat tgcctgaggg
     5881 caccatcaat atcaggagcg actgggatgt ggaatggtgc ccgcatccgc actggtttta
     5941 ccgcatcagc aagtatacac ttccgtttat tcaaagcgag ttcgttccag aaacgcgatt
     6001 cctcagtgaa ctgcctgtgt tgccttccaa cctgaacgat tatgttttga aacccttgtt
     6061 ttcatttgca ggccagggcg tgatcattga cgtaactccg gaagacatag ccgccgtgac
     6121 cgatcctgaa aactggattt tgcagcgcaa agtgaagtac gccgatgtga tccaaacacc
     6181 tgatgtaccc gccaaagcag agattcgtat tttttacttc tggcccaaag ggtcggcacg
     6241 tcctattcct gcccaaaacc tggctcgcct gagcaagggt aaaatgattg gcgttcgcta
     6301 caacgccgac aaggaatggg tgggcggctc acaggtgtat tttgaaaagt aaattttcgc
     6361 ttagcctttg attgaatgga tagcctgccg gcacctgtgc tcactcctgc tatcggatga
     6421 aaaagaagta agcaatgatg acggctgcga ttacgccaat gaaatcggca atgagcccgg
     6481 cccaaatggc atagcgcact ttcctgatgc ccacgctacc aaaatacaat gccagtatat
     6541 agacagtagt atcggcactt ccctggaatg tggaagccat ttttcctaca aaactgtcag
     6601 gcccgtgggt tttgaagaga tcgagcatta aaccccgggc gccgcttccg ctgaatggtt
     6661 tcatgatggc tacgggcaag gctggtacaa aatcggtccc cacgcccatg gcagtgaaca
     6721 cccaactgaa tccattgatg ataaaatcaa gcgccccgct ttcgcggaaa acgcgaatgc
     6781 ccaccagcat gcccacgagg taaggaatga tccttacgat gacttcccat ccaccttttg
     6841 ccccttcaat aaatgcatcg aatacattga tcttgcgtat aaaaccgccg gtaataaagg
     6901 tggctacgat gagaaacaac aataggttgc caaacacttt gctaaaggtt tcacgggtaa
     6961 gaaaagtttc ttcggcaagg tctttctgag cgggcaggat gctgataaaa agcatgaacc
     7021 caataacggc tgccagaatg ccaatgatcc agccagcaag tacaaggtca aatttgagcc
     7081 gctgccacaa cccggtaaca atgatgctgg caacagtagt aatgatggtg cccaacacgc
     7141 agggaataaa cacgctggtg ggatcaatgg accctgcacc ggcccggtat gcaaaaatgc
     7201 tcaaaggcaa aagcgtgagg ccactggtat gcagcaccag gaacatgatc tgtgcattgg
     7261 tagcagtatc cttattgggg tttagcgttt gcaggctttc catcgccttc aatccaaatg
     7321 gcgtggcggc attgtcgaga ccaagcatgt tggcactgaa gttcatcacc atttgcccca
     7381 tagcagggtg cctgtcgggt acgccgggaa aaagccgctt caggaatgga ttgagcagac
     7441 gagccaggaa attaacagct ccagcctttt ccccaatatt catgaggccc atgaaaaaca
     7501 ccattacgcc agtgagaggt aaagccacat ccattaccga actcttcgag gcatcaaaaa
     7561 tgccgtcgac cagttttttg aatatgtcgt aatcctggag aaaaatcaac ttgaacaaag
     7621 ccactaccag gccaatcaaa aagaaagcaa tccaaacgta attgagcgcc atacaaagag
     7681 aaatatgccc gccaatatcc tatttccaga ggatatacgg tcaaattttt atccggaagc
     7741 ttatgggcct cgctccgctc aaagcaggtg gtgaatgcgg cgcatcatca ggttccacag
     7801 atagctgaac atagtgtgag attttggtta gaagacaaat attggcaaca attcgctgca
     7861 atgaagtccc atttacacca gttgcatttg gccatgttga acagtgctat ggactgatga
     7921 cctgcgcggt ttaacaatgg gggattgcaa tagatactgt cctgccccct acttttgcag
     7981 ccttaaaaaa cggctggcta ccaaccaggc agccctcaaa ctttcagcag catggcatta
     8041 caggcaggta tcgtaggtct acccaacgta ggaaaatcaa cacttttcaa cgcggtgagc
     8101 aatagtgcaa aagcgcaggc aagcaactac cggttttgca ccattgatcc caacgtgggc
     8161 ctggtggatg tgccggataa gcgactggat aagctgagcg agctggtaaa cccacagcgg
     8221 gtagtgccca cccagatcga aatagtggac atagcaggcc tggtgcgtgg tgccagcaag
     8281 ggggaaggcc tgggcaataa attcctggcc aacatccggg aagtggatgc cattatccat
     8341 gtggttcgct gctttgaaga tgagaatgtg ctgcgggaag aaggcgctat caatcccatt
     8401 gcagataaag agatcattga caccgagctg caactgaagg acctcgaaag tgttgagaag
     8461 aaaattgccc gcatcgaaaa acaggccaaa gcaggcgatg ccaaactgaa agcggaactt
     8521 gaagtattgc ttctttgcaa aaatcatttg gagcaaggca aaaacatcag ggaactcggt
     8581 ctggggaatg aacaagtggg tgccattgcc gatttgtttc tgctgacatc caaacccgtg
     8641 ctgtacgtgg ccaatgttga tgaagcttca atgcataccg gcaataaata cagcgatctc
     8701 cttaaagaag tagctgtacg tgaaggcgcc cagttgatta taatgaacaa ctccattgaa
     8761 gcgcagatca ctgaaatgga agaccccgag gtgaagcaat tgttcatgga agagtaccac
     8821 atggaggagc ccgccttgca ccgcttgatc cgctctgtat acaaattgct caaactgtcc
     8881 acctacttca ctgccggtga aaaggaagtg cgtgcctgga caatacatga aggttggaag
     8941 gccccccagg ctgccagtgt tatccatacc gattttgaaa aaggattcat caaggcggag
     9001 gtgattgcct acgatgattt tgtgaagcat ggctcagaag ctgcttgtcg cgataacggc
     9061 cgtctccgca ttgaaggcaa agaatacctg gtaaaagacg gtgacatcat gcacttccgg
     9121 ttcaatgtgt agcctgcagt aagctgggat ttttcaagtc ttttatcttg tcgatccaac
     9181 tgagggcctt tgcattgttg gccaattgcc gcagagcgtc caggtgcctg gtatggtgca
     9241 tatcggtgcc cacccatgag ataa
//
LOCUS       DATIQF010000596         5668 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_268328,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000596 DATIQF010000000
VERSION     DATIQF010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5668
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268328"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..967
                     /locus_tag="VLL95_10100"
     CDS             <1..967
                     /locus_tag="VLL95_10100"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HSR39253.1"
                     /translation="KKMAAKLAAVASCSPEELIITRNTTESLDMVIGGLDWQPGDEAV
                     MAEQDYGAMLDMFTQISKRHGVVCKKVSVPNHPNSDNEIVELYAKAIMPKTRLLMVCH
                     MINITGQVLPVRKIADMAHSKGVLVMVDGAHAFAQIQYKIPDLHCDFYGASLHKWLSV
                     PLGAGILYVKKDNISKVWPLLAEGERKPDDISRLNHIGTHPVATDLTIADAIEFYHQI
                     GPDRKEARLRYLQEYWTSKVRNTKGIIVNTPADPGRACGIANVGVQHLKPADLAATLL
                     NKYKIYTVAIDYANVHGCRITPNIYTTTKELDQLVTALTELAAAS"
     gene            1245..1538
                     /locus_tag="VLL95_10105"
     CDS             1245..1538
                     /locus_tag="VLL95_10105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="isoamylase early set domain-containing protein"
                     /protein_id="HSR39254.1"
                     /translation="MVQKTYYKTKDYAKVKFTLALENAETVEILGLNSDWENGVFMSK
                     KKDGSFSTEVNLPKSTQHEFKYRINAAEWINEPEADGELANNFGGSNSLLKID"
     gene            complement(1693..2487)
                     /locus_tag="VLL95_10110"
     CDS             complement(1693..2487)
                     /locus_tag="VLL95_10110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39255.1"
                     /translation="MSDSITFRCKGFRWPFWLSILLLLNLTMSVMFLTFLVGLPPIVS
                     VAFLLLSIVFGIGVIGAHMEYRITQEGIVQELWPFKWSPVKLPKASRLFLWNEIKSYQ
                     SGDDLSRGLERYHYLYITVRKFPYQLRLSDHQASKEALAVFEQAFQSVIETGVVSSTS
                     VDREMPTMVSSTEEPQKLSNAVSHSTNIDDVLGNALPVRRRPDFYNSRWAHVVFWLFV
                     LLFATIGFQMVVTRNSNPTNYWRMAIVVIPGMTYFAWRLYGRQRSR"
     gene            complement(2611..5187)
                     /gene="topA"
                     /locus_tag="VLL95_10115"
     CDS             complement(2611..5187)
                     /gene="topA"
                     /locus_tag="VLL95_10115"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HSR39256.1"
                     /translation="MAKNLLIVESPAKAKTIEKFLGKDFQVKSCYGHIRDLEKDDMGI
                     DIDRGFQPRYIIPEEKLKVVNELKKLAKASEEVWLASDEDREGESISWHLCEVLGLDP
                     RNTKRIVFHEITKPAIQKAVASPRTVNMDLVNAQQARRVLDRIVGFEISPVLWRKIGM
                     QRSLSAGRVQSVAVRLIVEKEREINAFTPESSFVVKAQFTGKDLNGKDISFVAEGNRF
                     NTEAAAEKFLQSCIGASYTVNDITVRPGKRSPAAPFTTSTLQQEASRKLGYGVAKTML
                     IAQKLYEAGHITYMRTDSVNLSDTALGAIGNAIESNYGKKYLQIRKYKNKNESAQEAH
                     EAIRPTYMENASINDPEGARLYELIWKRTIASQMADAETEKTTAKIGISTNNEQLTAS
                     GEVIKFDGFLKVYTEGTDEEDEQEEGRLPNLSKGQQVDLKEMTATEKYSRPSARYTEA
                     SLVKKLEELGIGRPSTYAPTISTILKRGYVEKADREGQQRTIRIWTLKSDKVASQKQS
                     ENFGAEKAKLFPTDLGFVVTDFLNRHFEKVMDYHFTANIEAEFDKVAEGKKQWNSMVR
                     DFYDPFHKEVEETLETATRATGERFLGEHPESRRPVFAKMGRFGAMVQIGSADDEEKP
                     QFASLRPGQSIETIALEDALALFKLPFSLRDYNGKEVSVGVGRFGPYVKFGDDFISLP
                     KGEDPLAVDMARAQAIIADKQQADAPIATYEGQPVTKGKGRFGPFIKWGDLYINVPRR
                     YNFDALTQSDCDELIAAKLDKEANRYIQQWPELKISIENGRWGPYVRFGKKMLKLGKP
                     GKSKFTQEEAAALTLEEVKEIIVAQVPGAFDKKAAAGKGAAAKKTAPKKAATKKASSR
                     KK"
     gene            complement(5341..>5668)
                     /locus_tag="VLL95_10120"
     CDS             complement(5341..>5668)
                     /locus_tag="VLL95_10120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39257.1"
                     /translation="PLVEAHRAAENFFRFLQLPNRLKLEFEKEIEARAGHPLVWYSLP
                     RLVRQHRGQLLWVHDKDDDTTPFIDVKPVYENPPGHVNFLITEGLGHSRVYRDNKVRK
                     AIMDML"
BASE COUNT         1432 a         1445 c         1303 g         1488 t
ORIGIN      
        1 aaaaaagatg gctgccaaac tggctgcagt ggctagctgc agcccggaag aactgattat
       61 tacccgcaat accacagaaa gcctcgacat ggtaatcggt ggtctcgact ggcaaccagg
      121 cgatgaagcc gtgatggcag aacaggacta tggcgccatg ctggatatgt ttacccaaat
      181 cagtaaacga cacggtgtgg tatgcaaaaa agtgtctgtg cccaaccatc ccaacagcga
      241 caatgaaata gtggaattgt atgccaaagc cataatgcct aaaacgaggc tgctgatggt
      301 atgccatatg atcaacatta ccggccaggt acttcctgtc agaaaaattg ccgacatggc
      361 acacagcaaa ggcgttttgg tgatggtgga tggcgcccat gcctttgccc aaattcaata
      421 caaaattccc gatctccact gcgacttcta cggcgccagc cttcacaaat ggttaagcgt
      481 tccattggga gcagggatct tgtatgtaaa aaaggacaac atcagcaagg tgtggccgct
      541 gctggctgaa ggcgaaagaa aaccagacga catatcgcgg ctgaatcata ttggcacgca
      601 cccggttgcc acagatctca ccattgcaga tgccatagaa ttctaccacc agataggccc
      661 cgaccgcaag gaggcccgct tgcgctacct gcaggaatac tggacatcca aagtcaggaa
      721 cacaaaaggc atcattgtta acaccccggc cgatcccggg cgggcctgtg gcatagccaa
      781 tgttggtgtt caacacctga agcctgccga tctggccgct accctgttga ataaatacaa
      841 gatttacaca gtagctatcg attacgccaa tgtgcatggt tgcaggatca ctcccaacat
      901 atacacaacc accaaagagt tggaccagtt ggtaacagcg ctgacagagt tggcagccgc
      961 cagctagcat gattgctgca gttagaggat cttaaggcaa gtctgagcca ttgactgtta
     1021 gaaaagcaat gaattgcaac gcacatggac tggggctgcc atgatttctt tgttgctaca
     1081 tcgatcattg tcttgtaaga cattgcgccg ccaatgttta tacaaattca ggcatccccc
     1141 acgagttttc cacaattgaa tctgtaatgc ctggaggcac tgggttaccc tttttctgaa
     1201 gccgtattaa aggtgtccaa agattgttca ccaaacaaac catcatggta caaaagacct
     1261 attacaaaac caaagactac gcaaaagtta agtttacact ggcactcgaa aacgccgaaa
     1321 ccgttgaaat ccttggcctg aacagcgatt gggaaaatgg agttttcatg agcaagaaaa
     1381 aggatggatc cttttctaca gaggtgaatc ttcccaaaag cacccagcac gaattcaaat
     1441 acaggatcaa tgctgcagaa tggatcaacg agccggaggc tgatggcgaa ttggccaaca
     1501 actttggcgg aagcaacagt ctactgaaga tcgactaata ccaggggatt gtccgcaatc
     1561 ccttccacat atcctacata caaaaaatgc tgccatatat tgatgatggt ggcatttttt
     1621 tatgtgataa tgttgtgcat cagcaaagct gctggcctgc atatgtgagg ctttgcccaa
     1681 taccaggcat cgtcaacggg atcgttgtct tccataaagt cgccaggcaa aatatgtcat
     1741 gcccggtatc accactatgg ccatacgcca gtagttggta gggtttgaat tgcgtgtcac
     1801 caccatctga aatccgatgg tggcgaaaag cagcacaaac aaccagaaga ctacgtgtgc
     1861 ccagcggctg ttgtaaaaat cgggccgacg tctcacagga agtgcattgc ccaaaacgtc
     1921 gtcgatattg gtggaatgtg agacagcatt actcaacttt tgtggttctt cagttgacga
     1981 caccattgtt ggcatttccc tgtccacact ggtggaactt actacgccag tctcaatcac
     2041 agattgaaat gcctgttcaa atacagccaa tgcttctttg ctggcctggt gatcactcag
     2101 cctgagttga tagggaaatt ttcggacagt gatatacaaa tagtgatatc gttccagccc
     2161 ccgggataga tcgtcgcccg attgatacga cttaatttca ttccacaaga aaagcctgct
     2221 ggctttgggc agtttaaccg gcgaccattt gaatggccat aactcctgca ctattccctc
     2281 ttgggtaatg cggtattcca tgtgcgcacc tattactcca ataccaaaaa cgatgctcaa
     2341 cagcagaaat gccacactca caataggcgg caagccgaca agaaacgtca ggaacattac
     2401 tgacatcgtg agattgagca gcaacaaaat agacaaccag aaaggccatc gaaatccttt
     2461 gcagcgaaag gttatggaat cggacataat gaaaattgca aaatgattct tgcaatttca
     2521 aaaaattcca ttcaacccat gttcataacc atcccctgct gaaaatgcag aaagaagcct
     2581 accctggcag agaatgcatt ttcgccgcct ttattttttg cgggaactcg cttttttggt
     2641 ggctgctttc ttgggggcag tttttttggc agcggctcct ttcccggcag ctgctttctt
     2701 atcgaaagcg cccggcacct gcgccactat gatctccttc acttcctcca gcgttaatgc
     2761 agccgcctct tcctgcgtga atttgctctt gccgggtttt cccaacttga gcattttctt
     2821 gccaaaacga acgtagggtc cccagcggcc gttttcgata ctgatcttca attcgggcca
     2881 ttgctgaata tagcgattgg cctctttgtc cagtttggct gcaatcaatt cgtcgcaatc
     2941 agattgcgta agtgcatcaa aattgtaacg gcggggaaca ttgatataga ggtcgcccca
     3001 ttttatgaaa ggaccgaaac gcccctttcc tttggtcaca ggctggcctt cataggttgc
     3061 aatgggtgca tcagcctgct gtttatcagc aatgatggct tgtgcccgag ccatgtctac
     3121 cgccaatggg tcttcacctt tgggcaatga aataaaatca tcaccaaatt ttacataagg
     3181 gccaaagcgg cctactccta cgctcacttc cttgccatta tagtctctca gcgaaaaagg
     3241 aagtttgaac aaagccagcg catcttccaa tgcaattgtt tcaatgctct gacccggacg
     3301 caaactggca aactggggct tttcttcgtc gtcggcagaa cctatttgca ccatggcgcc
     3361 aaagcggccc attttggcaa ataccggcct gcggctttcc gggtgttcac ccaaaaatct
     3421 ttcaccggtg gcacgggtgg ctgtttccag cgtttcttcc acttctttat ggaaaggatc
     3481 ataaaaatca cgcaccatgc tgttccactg cttcttgccc tcggccacct tgtcaaattc
     3541 agcctcgata ttggcagtga aatgatagtc cattactttc tcgaaatgcc tgttcaaaaa
     3601 gtcggtgacg acaaaaccga gatcggtagg aaacagtttt gctttttcag caccgaaatt
     3661 ctctgactgc ttttgagaag ccaccttatc gcttttcaac gtccagatgc gaatcgttct
     3721 ctgctgcccc tcgcggtcag ctttttcaac atagcctctt ttgagaatgg tggaaatggt
     3781 aggtgcatag gtggaaggac ggccaatgcc cagttcttcc agttttttca ccagcgaagc
     3841 ttcggtgtat cgggcagatg gccggctgta tttttcagtg gcggtcattt ctttcaaatc
     3901 cacctgctgt cctttggaaa ggttgggcaa cctgccttct tcctgctcat cttcctcatc
     3961 agtgccttcg gtatacactt tcaggaatcc atcgaactta atgacttcac cgctggcagt
     4021 caactgttca ttgttggtgc tgatgccaat tttagcggtg gttttttctg tttcggcatc
     4081 cgccatctgc gaggcaatag tccgtttcca gatcaattca tacaaccggg caccttcagg
     4141 atcattgatg ctggcattct ccatgtaggt gggcctgatg gcttcgtggg cttcctgggc
     4201 gctctcattt ttgttcttgt atttgcggat ctgcaaatac tttttgccgt agttgctttc
     4261 aatagcattg ccaatggcac ccaatgcggt atcactcagg tttacactat cggtacgcat
     4321 ataggtgatg tgacccgctt cgtacagctt ttgggctatg agcatggttt tggccacgcc
     4381 atatcccagc ttgcggctgg cttcctgttg taaggtggaa gtggtgaaag gcgcagccgg
     4441 actgcgtttg ccgggtctta ctgtgatgtc gttcactgtg tagctggcac caatgcagct
     4501 ctgcaaaaac ttctcggctg cggcttcggt gttgaagcga ttcccttcag ctacaaaact
     4561 gatgtctttg ccattgaggt ctttgccagt aaattgtgct tttacaacaa aagaactttc
     4621 cggggtgaag gcgttgatct cccgctcctt ttctacaatc aaacgaacag ccacactttg
     4681 cacacggccg gcgctcaagc tgcgttgcat gccaattttc cgccacaaaa ccgggctgat
     4741 ctcaaagcct acaattctat cgagtacccg gcgtgcctgt tgggcattta ccaggtccat
     4801 atttaccgtt cttggactgg ccaccgcttt ttgaatggcc ggcttggtaa tttcatgaaa
     4861 tacaatgcgc ttggtattcc tggggtcgag gcccagtacc tcgcacaggt gccagctgat
     4921 gctttctcct tcacggtcct catcgcttgc caaccaaact tcttctgaag cttttgccag
     4981 ctttttcagt tcattcacca ccttcagttt ctcttccggg atgatataac gaggctgaaa
     5041 tccacgatct atgtcaatgc ccatgtcatc cttctcgagg tcgcgaatat gaccataaca
     5101 actcttgacc tggaaatcct ttcccaggaa cttctcaatt gttttggctt ttgcagggct
     5161 ctctactatc aataaattct ttgccatagg atgacggatc gtgtggtttt atcggggcaa
     5221 aagaggctgt taaatgacct cccaagcccc gctttgcagg cagcaatatt aggataactt
     5281 gaaaaaaagc gtgcctaaac aaaaatcaac cggtggggat tccgtggctt tcaagctggt
     5341 ttacagcatg tccataatcg cttttcgcac cttattatcg cggtacaccc ggctgtggcc
     5401 cagcccttcg gtgatcaaaa agttcacatg gccgggcggg ttttcataca ccggttttac
     5461 atctataaat ggcgtggtat catcgtcttt gtcatgaacc caaagcagtt ggccacggtg
     5521 ctggcgcacc aaccggggca gcgaatacca caccaaagga tgcccggccc gggcttcaat
     5581 ttccttttcg aattccaatt tcaggcggtt gggcaattgc aaaaaccgga aaaaattctc
     5641 cgctgccctg tgggcttcta ccagcggg
//
LOCUS       DATIQF010000597         2215 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_252842,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000597 DATIQF010000000
VERSION     DATIQF010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2215
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252842"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(131..1438)
                     /locus_tag="VLL95_10125"
     CDS             complement(131..1438)
                     /locus_tag="VLL95_10125"
                     /inference="COORDINATES: protein motif:HMM:TIGR00791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015295 - solute:proton symporter activity
                     [Evidence IEA];
                     GO_process: GO:0015718 - monocarboxylic acid transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate:H+ symporter"
                     /protein_id="HSR39258.1"
                     /translation="MSIAIVVAALVLLILQIGWLKLHPFIAFLVTALLAGWWLGIPLP
                     ELPGLVKKGVGSMLGDVVVVVVTGAMLGKLIAETGAAATIADTLTGWFGTGRVQWALM
                     VTGFIVGIPLFYNVGFVLLVPLAFAIIYRTGLPPVYAALPMLAALSVTHGFLPPHPSP
                     MAIGAQLNANTGSVLLYGILLSIPAILVAGPLFASTLRKYKTAPLALFQPRVIPAGER
                     PGIMTSFTVALLPAVLLVIFALLQSFGKGQSPFLAFISDPSVVMLGCLLFATVLLGAV
                     SRSSASTLLQYYGDAIKDISVILLIIAGAGALKQVFADSGVSTSIGHLFQSANMHPLV
                     LGWLMAAVIRVCVGSATVAGLTAAGIIAPMSGTLSFNPNLMVLSIGAGSLFLSHVNDS
                     GFWMFKEYFNLSVKETLRTWTVMECIVSVVGLAGVLLLNAFIS"
     gene            1567..1995
                     /locus_tag="VLL95_10130"
     CDS             1567..1995
                     /locus_tag="VLL95_10130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39259.1"
                     /translation="MKRILIAIAICSMAANMGWSQVNQQPSPKMTDPELGHYYLNKSK
                     KQKTTGFILMGVGLVAWFGGAVMMVEDDLEGNSIDNGAAVMYLGFGATVASVPLFISA
                     AKNKGRAEILLRYENVPVGFVPQAPRSIPAVGVRLPLSRK"
     gene            complement(2021..>2215)
                     /locus_tag="VLL95_10135"
     CDS             complement(2021..>2215)
                     /locus_tag="VLL95_10135"
                     /inference="COORDINATES: protein motif:HMM:NF039927.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5946 family protein"
                     /protein_id="HSR39260.1"
                     /translation="QRKALIPEVSLPQHRGNITIADVLQADPGPARDAMIRQWCQSTW
                     QACTPCHEAIKAYLLQQGYQ"
BASE COUNT          565 a          581 c          603 g          466 t
ORIGIN      
        1 ggtgcatagc atctggacac catgaaattt atccaggggg aaatctttgt tgtgcttttt
       61 aggctcccat gaaatgcttt gcgccttctc gactttgcgt gaaccatagc agcccgaaac
      121 ctcctctcag tcaggagata aaagcattca gcaataaaac ccctgccagc cccactacgg
      181 aaacgataca ctccatcacc gtccaggtgc gcagcgtttc ttttaccgac aggttgaaat
      241 attctttgaa catccagaag ccagagtcgt tcacatgcga caggaacaga ctgccggcgc
      301 cgatggaaag caccatcagg ttagggttga aggaaagcgt gcccgacatg ggcgcaatga
      361 ttcctgctgc cgttagcccc gcaacagtgg ccgatcccac acaaaccctg atgacggctg
      421 ccatcagcca gcccaatacc agcggatgca tgttggctga ttgaaacagg tggccaatgg
      481 aagtgcttac gccactatca gcgaacactt gcttaagggc gccggccccg gcaatgatga
      541 gcaggatgac tgaaatgtct ttgatggcat cgccgtaata ctgcaacagg gtggaagcgc
      601 tgctgcggct tacggcaccc agcagcacgg tagcgaacaa caagcagcca agcattacaa
      661 ccgaaggatc gctgatgaat gcgaggaacg gagattgacc cttgccaaat gactggagca
      721 gggcaaagat caccagcaat acggcgggca gaagtgccac cgtgaaactg gtcatgattc
      781 cgggtctttc cccggcaggt atcaccctgg gttggaaaag cgccagcggt gccgttttgt
      841 atttgcgcaa agtggaggca aacaaaggac cggcaaccag gatggccgga atggacagca
      901 ggataccata gagcaacacg ctgcctgtgt tggcgttcag ttgggcgcca atagccatgg
      961 gcgaaggatg gggaggcaga aacccgtgcg taacggacaa ggccgccagc atgggcaagg
     1021 cggcatacac gggtggcaaa ccagttcggt agatgatggc aaaggccaac ggcacaagca
     1081 acacaaatcc gacgttgtag aataaaggaa tgcccacgat aaaaccggtc accatcaggg
     1141 cccattgtac cctgccggta ccaaaccagc cggtcagtgt gtcggcaatg gtggccgctg
     1201 ctcctgtttc agcaatgagt ttgcccagca tggcgccggt aaccactacc accaccacgt
     1261 cgcccagcat gctgccgacg cctttcttca ccagccccgg caactccggc agtggaatgc
     1321 ccagccacca gcctgccagc aacgcggtga ccaggaaggc gatgaaaggg tgcagcttca
     1381 gccatccgat ctgcagtatc agcaatacca gcgcagccac aacgatcgct atactcatgc
     1441 aacagtgatt gttcgattca atgaaaagga ttgccctccg aatctattgc atctgtcatt
     1501 ctttgcgccg gtttttttct gtaacttata tatggagtca atgctggctc ccataaaaat
     1561 gatggtatga aaagaatact gattgccatc gccatttgtt cgatggccgc gaatatgggc
     1621 tggtcacagg tcaatcaaca gccgagccct aaaatgactg atcccgagtt gggacattac
     1681 tatctcaaca aatcaaaaaa acaaaagacg accggtttta ttttaatggg tgtaggattg
     1741 gtagcatggt tcggtggagc cgttatgatg gtggaagatg atttggaagg aaactctatt
     1801 gataatggtg ccgctgtcat gtacctgggt ttcggcgcga ccgtggccag tgtgccgctt
     1861 ttcatttctg ccgccaaaaa caaaggacgg gcggaaatat tgctgcgtta tgaaaatgtg
     1921 ccggtaggat ttgtgccgca ggcacctcgc tccatacccg ctgtgggcgt aaggttgccg
     1981 ctgtccagga aatgagcagc aacgcatctt tgcaataaag tcactggtat ccttgctgca
     2041 gcaggtaagc tttaatggct tcatggcagg gcgtacaggc ctgccatgtg ctttggcacc
     2101 attggcgtat catggcatcg cgggccgggc cgggatcagc ctgcagcaca tcagcaatag
     2161 tgatgttgcc tcgatgctgt ggcagcgata cctccggtat cagcgctttc ctttg
//
LOCUS       DATIQF010000598         4480 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_116282,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000598 DATIQF010000000
VERSION     DATIQF010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4480
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116282"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..217
                     /locus_tag="VLL95_10140"
     CDS             <1..217
                     /locus_tag="VLL95_10140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39261.1"
                     /translation="DETWRPVARYLAGLPDDYDLAEAWDKVKTAQNAVLEKMVVLGPA
                     AKQLLTREQLNRLPVFYRFPEAPGLLQ"
     gene            complement(147..1205)
                     /locus_tag="VLL95_10145"
     CDS             complement(147..1205)
                     /locus_tag="VLL95_10145"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HSR39262.1"
                     /translation="MEKRWNLKPVNPAKVSALQEHLKISPVLCTMLTQRDIDTFEEAR
                     RYFRPSLQDLHDPFLMKDMHQAVNRIIGALANKEKILVYGDYDVDGTTSVACMYRFLK
                     SLDAAVEFYLPHRYKEGYGISKAGIEFAIDQGFHLIVSLDCGIKSVELVGFAKANGID
                     FIICDHHLPDETLPPAVAILNTKQSDCPYPFKELCGCGVGLKLIQAICKTMDLPDERW
                     TRYLDLVATAIAADIVSMTGENRVLTFFGLKQVNENPSTGIKALMHLAELKDKVHVNN
                     LVFVIAPRVNAAGRMDDARKAVELFIEDDFDKALALAEQLHSDNTDRREADSTITEEA
                     LALLENDKIPEACSTVRG"
     gene            complement(1241..2203)
                     /locus_tag="VLL95_10150"
     CDS             complement(1241..2203)
                     /locus_tag="VLL95_10150"
                     /inference="COORDINATES: protein motif:HMM:NF012568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HSR39263.1"
                     /translation="MAVLSSIIDAELVAFESKFKAAVKSQAPLLDRITHYIINRKGKQ
                     LRPRFVLLSAKLFGPVTERSYRAASLVELLHTATLVHDDVVDESYERRGFFSINALWK
                     NKVAVLVGDYMLSKGMLLSVDNQDFETLAIMSTAIRNIIEGELLQLEKSRKLNLHEGV
                     YLEIIKNKTASLLASACAAGAWSTSQDKESTEKMRLFGEKVGMAFQMKDDLFDYGAAD
                     IGKPTGNDIKEKKLTLPIIYAINHAPAALRRQMIYTVKNENKNPERVKWLVEQVQNSG
                     GIAYATQKMETYTQEAREILESFAPSPVRDALQELVDFTTARKY"
     gene            2388..3317
                     /locus_tag="VLL95_10155"
     CDS             2388..3317
                     /locus_tag="VLL95_10155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39264.1"
                     /translation="MASKKFTLLFSLVIAGVTIGYSQLGGTIDYQDSTKINKKKLPQY
                     NEWKNNSKTNVFPPVPKSQGQLSINGGLLLQDADCPTNAGWNVGVSYRKALGYVVSLR
                     AGFGYGVVTGLDYKPSKYLYNNPALQPYGATSGFYVHNNKTTVMTPSLDAIFSLNNIM
                     FHRPKSKFNFYGLAGYTALVYKTTMDVRDGSALYNFASLNNTFFGRPRKDIRSDLKDF
                     FDGEYETNAVVRGREQNFDQSGSGKNQWRHSFSVGGGTEFRVASRMSLGLEFKYMFTS
                     DDYIDGWFLGQAGALTPNNDNLVFTNLFINFNL"
     gene            3365..4162
                     /locus_tag="VLL95_10160"
     CDS             3365..4162
                     /locus_tag="VLL95_10160"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HSR39265.1"
                     /translation="MKTLKYNLVALMLIGFAVSGISQSTDKTNYKKQTGSTDKRVAPL
                     WWYNPLAYPYGEISNTSIMKFPKPVLDDSDNDGVADQFDIEPNTPAGCPVDTKGKSRD
                     TDGDGVPDCRDKELVTPTTCQPVDADGVGKCPDPECCKNIVAAPPTCAIGSLPSVQFT
                     GSTVALSSSATAILDAAASQIKANPNCKICVVGHGGASKREQQMSWDRVNAVINYLVE
                     KQGISRDRFVFKYGEEGDANTVDLQDCTGEEGPNMVPAPHPQYRKSK"
BASE COUNT         1116 a         1087 c         1067 g         1210 t
ORIGIN      
        1 tgatgaaacc tggcgcccgg tcgcccgcta cctcgccgga ctacccgacg actacgatct
       61 cgccgaagcc tgggacaagg tgaagaccgc ccagaacgcc gtgctggaaa agatggtggt
      121 cctcggaccg gcggcgaagc aactgctcac ccgcgaacag ttgaacaggc ttccggtatt
      181 ttatcgtttt ccagaagcgc cagggcttct tcagtgatgg tactgtccgc ttcacggcgg
      241 tcggtattgt cgctatgcag ttgttctgca agcgccagtg ccttgtcaaa atcatcttca
      301 ataaaaagtt ccactgcttt gcgggcatcg tccattcttc ccgccgcatt aacgcggggc
      361 gcaattacaa ataccaggtt gttgacatgc actttgtctt tcagttcagc caggtgcatc
      421 aatgccttta tgccggtaga cggattttca ttgacctgct tcaggccaaa aaaagtgagc
      481 accctgttct ccccggtcat cgacacaata tccgcagcga tggctgttgc aacaagatca
      541 agatagcggg tccacctttc atcgggcagg tccattgttt tgcagatcgc ctgtatcaac
      601 ttaaggccca ctccgcagcc gcaaagttct ttaaaaggat aaggacagtc ggactgcttg
      661 gtgttgagaa tggccacagc aggggggagt gtttcgtcag gcaggtggtg gtcgcaaatg
      721 atgaagtcaa tcccgttggc cttggcgaat ccaaccaact ccactgattt gatgccgcaa
      781 tcaagagaca ctatcaagtg gaagccttgg tctattgcaa attcgatccc tgctttgctt
      841 attccgtacc cttctttata ccggtggggt aaatagaatt ctactgcagc atccagcgat
      901 ttcagaaaac ggtacataca ggccactgaa gtggtgccat ctacatcgta gtcgccgtaa
      961 acaaggattt tttctttgtt ggcgagtgca cctattatgc ggtttacggc ctggtgcatg
     1021 tctttcatca ggaaaggatc gtgcaagtct tgcagcgaag ggcggaagta ccggcgggcc
     1081 tcctcaaaag tgtcgatgtc gcgctgtgtc agcatggtgc aaagcacagg gctgatcttc
     1141 aggtgttcct gtagcgctga cacctttgca ggattcacgg gtttcaggtt ccaccttttt
     1201 tccattgcgg cgcgaaaatt ttgtgttgga aaaaatacga tcaatatttc ctcgcggtgg
     1261 taaaatctac cagttcttgc agggcgtctc ttacgggaga aggggcgaaa ctctccaaaa
     1321 tctcccgggc ttcctgtgta taggtttcca ttttttgggt ggcataggct attccgccgc
     1381 tgttttgtac ctgttctacc agccatttca ccctttccgg gttcttattt tcatttttga
     1441 ccgtgtaaat catctgcctt cgcagggctg caggtgcatg gttgatcgca taaataatgg
     1501 ggagggtgag tttcttttcc ttgatatcgt tgcctgtggg tttgccgatg tctgccgcgc
     1561 cgtaatcaaa taaatcgtct ttcatctgga aagccattcc caccttttca ccaaaaaggc
     1621 gcattttctc cgtcgattct ttatcctggc tggtgctcca agcccctgcg gcgcaggccg
     1681 atgccaaaag agaagcagtc ttgttcttaa tgatttcgag gtaaacccct tcgtggaggt
     1741 ttaattttct cgacttttcc aattgcagca attcaccctc gatgatgttc ctgatggccg
     1801 tactcatgat ggccaacgtc tcaaagtctt gattatcaac agataatagc atgcccttgg
     1861 acagcatgta gtctccaacc agaacagcca ctttgttttt ccaaagtgca ttgatcgaga
     1921 aaaaacctcg cctttcataa ctctcatcca ccacatcgtc atgcaccagc gtggccgtat
     1981 gtagcagttc caccagcgag gccgccctat aggagcgttc ggttacaggg ccaaaaagct
     2041 tggccgaaag caatacaaac ctgggcctga gctgcttgcc tttgcggttg attatgtagt
     2101 gggtaattct atccagcagc ggtgcctggc tcttaacggc ggccttgaat ttggattcaa
     2161 aggctactaa ttctgcatcg attatggagg ataggacagc cacggaagga gtttggcggc
     2221 aaaataatgg ataaattgaa cttggcgggg aactcagttg gaggttggtg ttggaggatt
     2281 aattgaataa tccaatgaaa tacaaagcat taaaatttgt ttatttaatc ccgcatccta
     2341 tttttgtccc gattactcta gaaattcata atcacaacta atttcttatg gcaagcaaaa
     2401 agttcacact gctattttca ttggtgattg ccggggttac aattggctac agccagttgg
     2461 gaggcacgat agattaccaa gactcaacca aaatcaacaa gaaaaaactt cctcagtaca
     2521 acgagtggaa gaacaattca aaaacaaatg tttttcctcc ggttccaaaa tcacagggcc
     2581 aattgtcaat taatggcggt ctgctgctgc aagatgccga ttgccctact aatgccggat
     2641 ggaatgtagg tgtttcttac cgtaaagcac tgggttacgt agtgtcgctg cgtgctggct
     2701 ttggctacgg tgttgtaacc ggcctggatt acaagcccag caagtatttg tacaacaacc
     2761 cggcattgca gccttatgga gctaccagtg gtttctacgt tcacaacaac aagaccactg
     2821 tgatgacacc ctctttggat gcgattttct ctttgaacaa catcatgttc caccgtccca
     2881 agagcaaatt caacttttac ggcctggcag gttacactgc cttggtttac aagaccacaa
     2941 tggacgtaag ggatggcagt gcgctgtaca acttcgcttc tcttaacaac accttctttg
     3001 gccgccctcg caaagacatc cgcagtgact tgaaagactt ctttgacggc gaatacgaga
     3061 caaatgctgt ggttagaggc cgcgagcaga actttgacca gtcaggttca ggcaaaaacc
     3121 agtggcgcca ttcattttct gtgggcggcg gcaccgaatt ccgtgtagct tctcgcatgt
     3181 cactgggtct tgaattcaag tacatgttta ctagtgatga ttatattgat ggttggttcc
     3241 ttggtcaggc gggtgccttg actcctaaca acgacaacct cgtgtttaca aacctcttca
     3301 tcaatttcaa cctgtaagcc tacgctactg actagcattt gctcactcaa caactgaatt
     3361 agctatgaaa acactgaaat ataacctggt agcgctgatg ttgatcggat ttgctgtatc
     3421 cggtatcagc caatctaccg acaagacgaa ttataagaag caaacaggat caaccgacaa
     3481 gcgtgtagcc cccctttggt ggtacaaccc cttggcgtat ccttatggag aaatcagcaa
     3541 tacctctatc atgaagttcc ccaaacccgt attggacgac tctgataacg atggcgtggc
     3601 tgaccaattt gacattgaac ccaatactcc tgcaggttgc cctgtagata cgaaaggaaa
     3661 gagccgcgat actgacggag acggtgttcc tgactgccgc gacaaggaat tggtgactcc
     3721 aactacctgc cagccagttg acgctgacgg tgttggtaag tgtcctgatc ctgagtgctg
     3781 caaaaatatt gttgccgctc ctcccacttg cgccattggt agcctgccaa gcgttcaatt
     3841 caccggtagc actgtagcgc tcagctcttc tgccactgct attcttgacg ctgccgccag
     3901 ccaaatcaag gcaaatccca attgtaagat ctgcgttgta ggtcatggtg gggctagcaa
     3961 gcgtgaacag caaatgagct gggatcgcgt aaacgctgta ataaactacc tggttgaaaa
     4021 gcaaggtatt agccgcgacc gcttcgtgtt taagtatggc gaagagggcg atgcaaatac
     4081 tgttgacctg caggattgca ctggtgaaga aggacctaac atggttcctg ctccgcaccc
     4141 acaataccgt aagagtaagt aatagtgact ttttgcaaat acagcccttc ctttacagga
     4201 ggggcttttt ttatggggca ttgttaacta ataattgggt tgttggagtc tacaaaagct
     4261 tcattttcgc tttttaccta cttttgccca cttttatggc catcaggttt ttgtctatca
     4321 tactgttttc ttcactgctt ctggcttgtt caccaatgaa caagatcctg aagagcagtg
     4381 attatgaaat gaaaattcga aaggcaaatg aatattttga tgcgaagaag tatgcacagg
     4441 cccagctcat ctacgaagat gtgatgcccg tgatgaaggg
//
LOCUS       DATIQF010000599         1604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_161721,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000599 DATIQF010000000
VERSION     DATIQF010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161721"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..722
                     /locus_tag="VLL95_10165"
     CDS             <1..722
                     /locus_tag="VLL95_10165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39266.1"
                     /translation="FKPSRFASVVEDAEHFIWTSSNKGVFRLNAQTGEYRQYIPNSFI
                     KTICIDSKGMVWAGGLDGLYNYNKAKDDFELFANEESAVSISNVINIVEDDQMNLWVS
                     TSSAIIKINADRIRLKKYSEAHGVRPTNFWYNDNFKAADGRLFLGIENGYYAFYPARV
                     SDSTIAPILTITDFKLNDKRIAAGDGGLLKAPLWQTDEIRLNYDQNVFSFDFFGVDYV
                     STGDMKYFFMLENYDNNWHDI"
     gene            786..1568
                     /locus_tag="VLL95_10170"
     CDS             786..1568
                     /locus_tag="VLL95_10170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39267.1"
                     /translation="MSADGGFAEKSIRIVISPPWYKTWWAYALYVLLFIIGGYLVFLY
                     QKYYILSRERERTRQKELTQAKEIEKAYHDLKNTQAQLIQAEKMASLGELTAGIAHEI
                     QNPLNFVNNFSEVNKELLAEMREAIEQKNFEEVNALAKDVEENEEKINFHGKRADAIV
                     KSMLQHSRSSNNKKEPTDINALCDEYLRLAYHGLRAKDKSFNATMKSDFDESIGNINI
                     IPQDIGRVILNLISNAFYVVDEKSKQGVAGYEPTLAISTRKE"
BASE COUNT          522 a          298 c          393 g          391 t
ORIGIN      
        1 tgttcaaacc cagccggttt gccagtgtgg ttgaggatgc cgaacatttt atatggacat
       61 ccagcaacaa gggtgtcttc aggttgaatg cgcaaacggg ggaataccgc cagtatatac
      121 caaacagttt cattaaaacc atttgtatag actcaaaagg gatggtatgg gccggcggcc
      181 tggatgggct gtataattat aataaggcaa aggatgactt tgaattgttt gccaatgagg
      241 agtccgctgt aagcatcagt aatgtgatca acatcgtgga agatgatcaa atgaatcttt
      301 gggtatctac gagctctgcc attatcaaaa tcaatgcaga caggattaga ctgaagaaat
      361 actctgaagc ccatggagta aggcctacca acttttggta caatgacaat ttcaaagcag
      421 ctgatggcag gctgttcctg gggattgaaa atgggtatta tgctttttac ccggccaggg
      481 taagtgatag cactatagcg cccatactta ccatcacaga ctttaagctg aacgacaagc
      541 gaatagcagc gggagatgga ggtctattga aagcgccttt atggcaaacc gatgagatac
      601 ggttgaatta cgatcagaac gtattttcct ttgatttttt tggagtcgat tatgtgagca
      661 ctggtgacat gaaatacttt ttcatgctgg aaaattatga caacaactgg catgatatat
      721 gaagcgacca tcgggcaacc ttcaacaata ttccacccgg caattacaga ttcagggtaa
      781 aggcagtgag tgctgatggt gggtttgcag aaaaatcaat ccgcattgtc atcagcccgc
      841 cgtggtacaa aacgtggtgg gcatatgcat tgtatgtctt gttgtttatc ataggaggct
      901 acctggtctt tttataccag aagtattata tcctcagtag ggagcgggaa aggacacggc
      961 aaaaggagtt gacccaggca aaagaaatag agaaggccta ccatgatctg aagaacacac
     1021 aagcccagct catacaagct gaaaaaatgg cttcgcttgg ggaactcacc gcgggtattg
     1081 cccacgaaat acagaatccg ttaaacttcg tcaataactt ttcagaggta aacaaggaac
     1141 tgctcgcaga aatgagagag gcgatagaac agaaaaattt tgaggaagtg aatgcccttg
     1201 ccaaagatgt agaagagaat gaagaaaaga taaattttca tggtaaaaga gccgatgcta
     1261 ttgtaaagag catgcttcag cattcaagaa gcagcaacaa taagaaagaa cccacagata
     1321 ttaatgcgtt atgcgatgag tatttacgcc tggcttatca tggattgcgg gccaaagaca
     1381 aatcattcaa tgcaacgatg aaatcagatt ttgatgagtc aataggtaac atcaatatca
     1441 ttccgcagga tatcggaaga gtcattctca acctgatcag caatgcattc tacgtggtgg
     1501 atgaaaaatc aaaacaagga gttgctggtt atgaaccgac tttagcgata agcaccagga
     1561 aagaatgaga caaggtgctg gttgcggtga aggacaacgg caat
//
LOCUS       DATIQF010000600         3083 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_207548,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000600 DATIQF010000000
VERSION     DATIQF010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3083
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207548"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..718)
                     /locus_tag="VLL95_10175"
     CDS             complement(<1..718)
                     /locus_tag="VLL95_10175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39268.1"
                     /translation="MINSKPYEHLANPRTFLTLLISAFSCFIVLFYDLKLNNETMLFG
                     LIISFPLVFSLQSSFRRRDRALEFLSLFKASLNVVYRSIARSKKMPEEKRLEARQLLN
                     NAADKLVLCLRDSTVTPRQVYDAFDEVFYFVESQGKMVAGNGATRVIRYMRDVYESGA
                     FLLSLKSHRTIVALRMFSFIFINLFPFMQAAVLNQTMGHEVPQYVIYAASLVTAFVLI
                     TMYNIQVQLEYPFDQIGLDDI"
     gene            complement(799..1410)
                     /locus_tag="VLL95_10180"
     CDS             complement(799..1410)
                     /locus_tag="VLL95_10180"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HSR39269.1"
                     /translation="MKIICIGRNYADHAKELGNQVPDEPVIFMKPKSALLPPGAAFYY
                     PAFTNELHYECELVVKISKNGKFITPSAASQYYNEVTLGIDFTARDVQDKLKKKGLPW
                     EKAKAFDHSAAVGDFVPWESLPNHKDIHFILNINGEQVQEGFTRDMLFSINDIIAHVS
                     EYFTLNIGDLIFTGTPAGVGECSVTDHLEGWLEGNKVLDVEVK"
     gene            complement(1610..2188)
                     /gene="pth"
                     /locus_tag="VLL95_10185"
     CDS             complement(1610..2188)
                     /gene="pth"
                     /locus_tag="VLL95_10185"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: protein motif:HMM:NF013368.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HSR39270.1"
                     /translation="MNNYLIIGLGNIGAEYAHTRHNIGFDIADAFVKKQDAGWHVDRL
                     AEVSQFRIKGRGITVIKPTTYMNLSGKAVKYWLDKEKIAIENSLTLVDELALPLERIR
                     LRPSGSDAGHNGLRNIQELLGTNAYPKLRFGIGNNFPKGRQVDFVLGKWTPAEEPVVN
                     LKIEACVNLITAFILEGIQPAMNRYNNQAFGA"
     gene            complement(2317..2910)
                     /locus_tag="VLL95_10190"
     CDS             complement(2317..2910)
                     /locus_tag="VLL95_10190"
                     /inference="COORDINATES: protein motif:HMM:TIGR00731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HSR39271.1"
                     /translation="MKAITIEGQLRTDFGKTATRQLRSQDLVPGVIYGGAQEVNFQAP
                     AADFKKLVYTPEFQLAKVVVDGKTYTCVLKDLQFDKVSDQLSHVDFLELVEDKKVVVD
                     LPVKFTGSAAGVKAGGRLVVKMKSLKVKTLPKFLKEQIEVDVTNLELNANIRVEDVKL
                     DNMEIMNSPRIPMATIVMTRQLKQEEAAAAKEDKKKK"
BASE COUNT          757 a          758 c          786 g          782 t
ORIGIN      
        1 ggatatcatc caacccaatc tggtcgaagg ggtattccaa ctgtacttga atattataca
       61 tcgtaatgag cacgaaggcg gtgaccagtg atgccgcata aatcacatat tgcggcacct
      121 catgccccat agtttggttg agcaccgctg cctgcataaa gggaaacagg ttgatgaaga
      181 tgaaactgaa catgcgcaat gccacgattg tccgatggct tttcagtgaa aggaggaacg
      241 cgccgctttc gtacacgtca cgcatgtagc ggattacacg ggtagcgcca ttgccggcca
      301 ccattttgcc ctggctttcc acaaagtaga acacttcatc aaatgcatcg tacacctgcc
      361 ggggagtgac cgtactgtcg cgcaggcaaa gcaccagttt gtctgcggca ttgttcagca
      421 gttggcgggc ctccaacctt ttttcttccg gcattttttt cgaccgggca atagaacggt
      481 acacaacatt gagcgaagct ttgaacaggc tgagaaactc cagcgccctg tcgcgccggc
      541 gaaaagaaga ctgcaaagag aataccagtg gaaatgatat gatcaggcca aacaacatgg
      601 tttcgttgtt tagcttaagg tcatagaaca atacgatgaa gcaggaaaaa gcagagatca
      661 ggagcgtgag gaaagtacgc ggattggcca aatgctcata tggtttgctg ttgatcacat
      721 atcaaatttt aggtatggga taaatatcgg aaataaagcg aaccagataa tgaaatggcg
      781 accagggacc agcagctatt atttcacctc tacatccagc actttattgc cctccagcca
      841 accttccagg tgatcggtaa cggagcactc tcctacgccg gcaggggtgc ccgtaaaaat
      901 gagatctcca atattgaggg tgaaatattc cgacacatgg gcaataatgt cgttgatgga
      961 aaacaacatg tcgcgggtaa agccttcctg cacctgctcc ccgttgatat tgagaataaa
     1021 atggatgtct ttgtgattgg ggaggctttc ccagggaaca aaatcgccga cagccgctga
     1081 atgatcaaat gctttcgcct tttcccaagg cagtcctttc ttcttgagct tgtcctgcac
     1141 atcacgggca gtgaaatcga tgcccagggt tacctcgttg tagtattggc tggctgcgga
     1201 tggggtaatg aacttgccat tcttgctgat cttcaccacc agttcgcatt cataatgaag
     1261 ctcgttggtg aacgccgggt aataaaaagc ggcgccggga ggaagcaggg cacttttggg
     1321 tttcatgaaa ataaccggtt catcgggaac ctggttgccc agttctttgg cgtggtcggc
     1381 atagtttctg ccaatgcaaa tgattttcat tagtaaggtg atttagaaaa acggggccag
     1441 gaagctgcct gtttttgttt ttaaaaatcg ccggagcggg tgttaaggat ctgttgggta
     1501 aagataggca atggttttca accgcttggg agccgggcca tggagattac ccaccaaaaa
     1561 ccgggtactt gtgcatagtg ggcccgggtg gtgaagcagg tggtgctttt caggccccaa
     1621 acgcctggtt gttgtaccgg ttcatggcag gctgaatgcc ttcgaggatg aaagcggtga
     1681 tcaggttcac gcaggcttct atcttcaggt tcacgacagg ttcttctgca ggtgtccatt
     1741 tgcccagcac aaaatcaacc tgtctgccct tcgggaaatt gttgccaatg ccgaaccgca
     1801 gtttggggta ggcattggtg cccagcagtt cctggatgtt gcgaaggccg ttatggccgg
     1861 catcgctgcc tgagggccgc aaccggatcc tttccagcgg cagggctagt tcatccacaa
     1921 gggtcaggct gttttcaatt gctatcttct ctttgtcgag ccagtacttc accgccttgc
     1981 cgctcaggtt catgtaggtg gtaggcttga ttactgtgat gccccggccc ttgatccgaa
     2041 actggctcac ttccgccagg cggtcaacat gccagccggc atcctgcttt tttacaaaag
     2101 cgtcagcaat atcaaaaccg atgttgtggc gggtatgtgc atactccgcg ccaatattgc
     2161 ccaggcctat gatcaggtag ttgttcataa cagcgacgcg aatttaggtg gtgcatcaaa
     2221 aacacagccg caataaatca ggccggtgcc aaaaacaaaa ctccccggcc actaatgtta
     2281 ccggggagcg aatcattgaa atcagagctg gcctgattat ttcttcttct tgtcttcctt
     2341 ggctgcagcg gcttcctcct gcttcagctg acgggtcatt acgatagtag ccatggggat
     2401 acggggagag ttcatgatct ccatgttgtc cagtttcacg tcttcaacgc gaatgttggc
     2461 gttcagttca aggttggtga cgtccacttc aatttgctcc ttcaggaact tgggaagggt
     2521 cttcaccttc aggctcttca tttttactac caggcgacca ccggctttta cacccgcagc
     2581 gctaccagtg aacttaacgg gcaggtctac caccactttc ttgtcttcta ccagttccag
     2641 gaagtctaca tggctcagtt ggtcgcttac cttgtcgaac tgaagatcct tcaatacgca
     2701 agtgtaagtt ttgccatcca ctactacctt ggccagttgg aactccgggg tgtaaaccag
     2761 ctttttgaag tcagctgccg gagcctggaa attaacttcc tgcgcacccc cgtaaattac
     2821 accaggcacc aggtcctgag agcgaagttg gcgggtggct gttttgccaa agtcggtcct
     2881 cagttgtcct tcgattgtaa ttgctttcat gtttaaaaaa tttgaggcgc aaaagtaggg
     2941 aaatgaaccc gaacgatgca cccaaatgag ccgctgaggc ttaaaaaact ggtaattaag
     3001 ccattgccag cctatttcta ctacctttcg gcccggaatt tgactacagt atggccaaaa
     3061 acagcctgcg cacccattgc cag
//
LOCUS       DATIQF010000601         2314 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_146710,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000601 DATIQF010000000
VERSION     DATIQF010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2314
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146710"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1167)
                     /locus_tag="VLL95_10195"
     CDS             complement(<1..1167)
                     /locus_tag="VLL95_10195"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HSR39272.1"
                     /translation="MLSTAEKTTKPATTVHRKAEGTSFFGKQIARSSQQEEQVQTRIQ
                     RSTFGSQPGPSFFQPRLSVSTPGDPYEREADATADAVMRMSEPAASPAQEEKEQVQRQ
                     VNDSAFMPGILHRQAADEEEIQAKEEERKEEDQSDHIMQPMLQRQEEPEEEETVQAKL
                     QRAASHTGSTATKAGVQRHPNKSTTTTIHRSSRGRLLSLQGSSRGPPAVTPRFESTLQ
                     QRTAGGSAMPEPTRQFMESRFGADFSGVRIHTDATAQEMSSSIRAHAFTYQNHIFFNS
                     GKFDTDSSAGKTLLAHELTHTIQQGASPVASNIARKHQFTAVQTKSIQMASAPQLDAA
                     VALARGEQGKVIANKAQPNGERVGSDRLVEYFKTTFGEDKIIPRYTGAPNTVVES"
     gene            complement(1176..1997)
                     /locus_tag="VLL95_10200"
     CDS             complement(1176..1997)
                     /locus_tag="VLL95_10200"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: protein motif:HMM:NF013661.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HSR39273.1"
                     /translation="MIIQSHKLVAEAGDTPVKWLNSPNQSGVIQPKYLIIHYTAGRNA
                     KSSIDWFMNPQANASAHLVIAQDGTITQMVPFNKKSFHAGISHWAGLEGMNSHSIGIE
                     LDNPGKLKQVGHKWMAWFGTEYPASKLLVAPHKHQTVPSGWHVYTQAQIESCIKASLA
                     IFHHYRLKDILGHDDISPGRKEDPGPAFPMESFKSRVMGRLEDHAPLYKVVKEGARFR
                     AAPSLDAAIMGKLKLNTKVEFIRSHMDWFLVKLIGKVPGIIEPEGWVHSSLLTRL"
     gene            complement(2017..>2314)
                     /locus_tag="VLL95_10205"
     CDS             complement(2017..>2314)
                     /locus_tag="VLL95_10205"
                     /inference="COORDINATES: protein motif:HMM:NF039901.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="contractile injection system tape measure
                     protein"
                     /protein_id="HSR39274.1"
                     /translation="VPFETVIDSNTGIPGEWKEEADHLLSAVITHWSKLGNTSVAALR
                     HSFLQRDGQLELKESRNTLKIPERTEDILLQFIPWSFRMIRLPWMKQLLETEWT"
BASE COUNT          447 a          590 c          614 g          663 t
ORIGIN      
        1 cgattccact acggtattgg gcgcaccggt atatcggggt atgatcttgt cttcgccaaa
       61 agtggttttg aaatattcta ccagcctgtc ggagcctacc cgttcgccgt tgggctgtgc
      121 tttgttggca atcaccttgc cctgctcgcc cctggccaaa gcaacggcgg catccaattg
      181 tggcgcactg gccatttgta tgcttttggt ttgtacagct gtaaactggt gtttgcgtgc
      241 aatgtttgag gccacggggc tggcgccttg ctgaatggta tgggtgagct cgtgggccag
      301 caaggttttc ccggcggaag aatctgtatc gaattttccg ctgttgaaga agatatggtt
      361 ctggtaggta aatgcatgcg ccctaatgct gctgctcatt tcctgggcag tggcatcggt
      421 atgtatgcgc acaccactaa agtccgctcc aaagcggctt tccatgaatt gacgggtagg
      481 ctcgggcatg gcgctaccac ctgctgtgcg ctgctgcaat gtagattcga agcggggggt
      541 aacggctggc gggccccggc tggaaccttg caggctcagc agcctgcccc ggctgctgcg
      601 gtgtatggtg gtggttgttg atttgtttgg atgtcgctgc acaccggctt tggtggcggt
      661 actgccggta tgggatgctg cccgctgcaa tttggcctga accgtctctt cttcctcagg
      721 ttcttcctgg cgctgcagca tcggctgcat gatgtgatca ctttggtctt cctcctttcg
      781 ttcttcttct ttggcctgta tttcttcttc atccgctgcc tggcggtgca gtatgcctgg
      841 catgaaggct gaatcattta cctgtcgttg tacctgttct ttttcctcct gcgctggtga
      901 agcggcaggt tcgctcatcc gcatcactgc atcggcggtg gcatcggctt cccgttcata
      961 aggatcgccc ggtgtactca ctgacaaccg gggctgaaaa aatgaggggc ctggttggga
     1021 tccaaacgtc gaacgctgga tacgggtttg tacctgttct tcctgttggc tgctgcgggc
     1081 aatctgttta ccgaaaaatg aagtcccttc cgctttgcgg tgcaccgtgg tagcgggctt
     1141 cgtagttttt tcggcagtac taagcatgca ttcctttaca acctggtgag caatgaactg
     1201 tgcacccaac cttcgggttc aatgataccc ggcacctttc cgatcagttt caccaggaac
     1261 caatccatat ggctccttat gaattccact tttgtattca acttcagttt tcccatgatg
     1321 gcggcatcaa gactgggtgc tgccctgaac ctggcaccct cctttaccac cttgtacagt
     1381 ggcgcatgat cctccaaccg gcccatcacc cgtgatttga atgattccat gggaaaagcc
     1441 ggacccgggt cttcttttct cccgggagaa atatcgtcat gccccaggat gtctttcagg
     1501 cggtaatgat gaaaaatggc gaggctggcc ttgatacagg attcaatttg tgcctgtgta
     1561 taaacgtgcc atcccgaggg aacagtttga tgtttgtgcg gagcgaccaa cagctttgag
     1621 gccggatatt cagtgccgaa ccaggccatc catttgtgcc ccacctgctt taatttgccg
     1681 gggttgtcaa gttcaattcc aatggaatga ctgttcattc cttccaaccc ggcccagtgg
     1741 ctgatgcccg catggaacga ttttttattg aatggtacca tttgggtgat ggtcccatcc
     1801 tgtgcaatga cgaggtgtgc cgatgcattg gcctgtggat tcatgaacca atcaatactt
     1861 gatttggcat ttctaccggc tgtgtaatga atgatgaggt acttgggctg aatgacaccc
     1921 gattgattgg gggaattcaa ccattttacc ggggtatctc cggcttcggc cacgagcttg
     1981 tgcgattgaa tgatcataat tgacaattga attgtttcag gtccattcgg tttccagcag
     2041 ttgcttcatc cacggcagcc tgatcatgcg aaaactccag ggaatgaatt gcagcaggat
     2101 gtcttccgtt cgctccggga tctttaaagt attgcggctt tcttttaatt ccaattgtcc
     2161 atcccgttgc aggaaactgt ggcgcaacgc tgcaacgctg gtattgccca atttggacca
     2221 atgtgtgatc acggcagaca acaagtgatc tgcttcttcc ttccattctc caggtatccc
     2281 ggtatttgaa tctatcactg tttcaaaggg aact
//
LOCUS       DATIQF010000602         1985 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_55389, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000602 DATIQF010000000
VERSION     DATIQF010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55389"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..321
                     /locus_tag="VLL95_10210"
     CDS             <1..321
                     /locus_tag="VLL95_10210"
                     /inference="COORDINATES: protein motif:HMM:NF014972.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39275.1"
                     /translation="QQIQQIKKMGNMKDLLGMIPGVGKQVKDLDIRDDAFKGIEAIIQ
                     SMTPEERANPDLINPSRKNRIANGSGKKLEEVNAFLKQFEQMKQMMKMMSKMPMGGGM
                     PGRK"
     gene            482..967
                     /gene="rpsP"
                     /locus_tag="VLL95_10215"
     CDS             482..967
                     /gene="rpsP"
                     /locus_tag="VLL95_10215"
                     /inference="COORDINATES: protein motif:HMM:TIGR00002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HSR39276.1"
                     /translation="MPVKIRLQRHGSKKRPFYFIVVADARAPRDGKFIQKLGTYNPLT
                     VPATIQIDRQKALDWLHKGAQPTDTVRRILSFKGVLYLKHLLRGVKLGLFDEATAMVK
                     FQKWHEEHEAAIARRKDANKRDVRARRTPPTIKKVKEVKAAPAPEAPEAEAPATEAPA
                     E"
     gene            1053..1571
                     /gene="rimM"
                     /locus_tag="VLL95_10220"
     CDS             1053..1571
                     /gene="rimM"
                     /locus_tag="VLL95_10220"
                     /inference="COORDINATES: protein motif:HMM:TIGR02273.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HSR39277.1"
                     /translation="MHDFVSIGKMVATHGIKGEMILVHGLGKKTDLKGVTAILVEDKS
                     GSRLPYFLEMAKAKSNEEIIVQLEGVDTKEKATQLLQKQVWLKQADFEKHATSNAPIS
                     LLGYTIVEENKVLGEIAEVIEQPHQLLCTVFINDKEVLIPLHEESLLKIDRRKKQVHV
                     ALPEGLLDIYLG"
     gene            1619..>1985
                     /locus_tag="VLL95_10225"
     CDS             1619..>1985
                     /locus_tag="VLL95_10225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39278.1"
                     /translation="MNPVRFLSLLFLIVQPLVALSNAAMPGVWQGGAGARFVPLYPSD
                     SAALQSISMQREEVLVHLYNGYAVVKGTYWMHNRADTTLSIVVGYPVQGTVNAPIVSH
                     INLGEPQALKVLVNGQPVET"
BASE COUNT          571 a          434 c          505 g          475 t
ORIGIN      
        1 cagcagatac agcagatcaa gaaaatgggc aacatgaagg atctgctggg catgataccc
       61 ggggtaggca agcaggtcaa agacctcgac atacgcgacg atgcctttaa gggcatcgaa
      121 gccatcatcc agagcatgac gccggaagaa agggccaacc cagacctgat caatcccagc
      181 cgtaaaaacc gtattgccaa cggcagcggt aaaaaactgg aagaggtaaa cgccttcctg
      241 aagcagtttg agcagatgaa gcagatgatg aaaatgatga gcaaaatgcc gatgggtgga
      301 gggatgcccg gccgcaaatg agcgattgag aaggcgtttt cgttttgata attgtcaaaa
      361 aatggtctga attccagaaa aattaacaaa gcaaattgtt ttggatgcct gcggtaccta
      421 atttcgcagc tccgaaagga attatttatt tattgttcac gcatttaaat ttctatttaa
      481 gatgccagtt aaaatccgct tgcagcgtca cggatcgaag aagcgtccgt tttatttcat
      541 cgtagtagcc gatgcacgtg ctccccgcga tggaaagttc attcagaaat taggtactta
      601 caaccccctg accgttccgg ctaccatcca gatcgatcgt cagaaggctt tggattggct
      661 gcacaaaggt gctcagccta ccgacactgt tcgtcgtatc ctgagcttca aaggtgtgtt
      721 gtacctgaag cacctgctgc gtggtgttaa gctgggtctg ttcgacgaag ccactgccat
      781 ggtgaaattc cagaagtggc acgaagagca tgaagccgct atcgcccgcc gtaaggatgc
      841 caacaagaga gacgtaagag ctcgccgtac tcctcctacc atcaagaagg taaaagaagt
      901 gaaagcagct ccagctcctg aggctcctga agcagaagcc cccgcaactg aagcgcctgc
      961 agaataagaa atgcagtatc agttgaaata attgatcccg ttctgcccat gcagaacggg
     1021 atttttcttt tgtgtacaac tacttttgcg ctatgcatga tttcgtatcg attggaaaaa
     1081 tggtagccac tcacggtatt aagggtgaaa tgatcctggt tcacggcctg ggtaagaaaa
     1141 cagatctgaa aggagtaact gccattttgg tggaagacaa aagcggatcg cggctgccat
     1201 atttcctgga aatggccaaa gcgaaaagca acgaagaaat cattgtgcaa ttggaaggag
     1261 tggatacgaa agaaaaggcc acccaacttt tacaaaagca ggtatggctg aagcaggctg
     1321 attttgaaaa gcatgctact tccaatgcgc ctatttcatt gctcgggtat acaatagtgg
     1381 aagaaaacaa ggtgctcggc gaaatagcag aagtgattga acagccgcat caactgttgt
     1441 gcactgtttt cattaatgac aaggaagtgc tgattccttt gcacgaagaa agcctgctga
     1501 aaatagaccg gcgcaaaaag caggtgcatg tcgctttgcc tgaagggctg cttgatattt
     1561 acttaggttg aattgagtgg gatgatttcc tgaaaagcaa tttgactaaa ttagggtcat
     1621 gaatcccgta cgttttcttt ccctgctatt cctaattgta caacccttgg tggctttgtc
     1681 aaatgccgcc atgcccggcg tttggcaggg tggagccggt gcccgttttg taccacttta
     1741 cccatctgat agtgcggcat tgcaatccat cagcatgcag cgcgaagagg tattggttca
     1801 tttgtacaat ggatatgcag ttgtgaaagg cacttattgg atgcacaacc gtgcagacac
     1861 aacattgagc attgttgtcg gctatcctgt gcagggaacg gtgaatgcgc ctatagtaag
     1921 ccatattaat ttgggggaac cccaagcgct caaagtgctg gtaaacggcc agcctgttga
     1981 aacct
//
LOCUS       DATIQF010000603         1680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_116310,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000603 DATIQF010000000
VERSION     DATIQF010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1680
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116310"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1221)
                     /locus_tag="VLL95_10230"
     CDS             complement(<1..1221)
                     /locus_tag="VLL95_10230"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HSR39279.1"
                     /translation="MPLNQRQLFLQHVAQTSPAPIGLEIVKAQGIYMWDTEGRQYVDL
                     ISGFSVMNIGHGNERVKAAIKKQVDDYMHLMVYGEIIETPQVQYAKRLTEFLPDSLNC
                     VYFTNSGAEAVEGAMKLAKRITNRSQIIAFNNAYHGSTQGALSIMGGEYWRNAYRPLL
                     PDILHVDFNTQEAIDTISEKTACVVVEVVQAEAGAQPANVEWLQALRDKCTATGTLLV
                     FDEIQTGFGRTGSLWAFQQYGVVPDILLLGKALGGGLPLGAFIASRENMNQLTFNPVL
                     GHISTFAGHPVCCAAGLAAFEELVEMMEDDRPRTTDQGRQTTNDRPTTSEEQALRMAG
                     INNKEQLIRQQLQHPAIKAIHGRGLLLAVEFESAELCQRICHAAVKAGLVTDWFLFAP
                     HCLRVAPPLIISEEE"
     gene            1283..>1680
                     /locus_tag="VLL95_10235"
     CDS             1283..>1680
                     /locus_tag="VLL95_10235"
                     /inference="COORDINATES: protein motif:HMM:NF012360.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HSR39280.1"
                     /translation="MPVILPVNGISPRLGADCYVAPNATIVGDVQMGDQCSVWFNAVI
                     RGDVHYIKMGNKVNVQDGACIHCTYLKHPTNIGNNVSIGHHAIVHGCTIHDDVLIGMG
                     AIVMDGCVVESNSIIAAGAVVLEGTHVPAG"
BASE COUNT          347 a          454 c          442 g          437 t
ORIGIN      
        1 ttcttcttcg gaaatgatca acggcggcgc tacccgcagg caatgggggg caaacaggaa
       61 ccaatcggtt accagcccgg cctttactgc tgcatggcaa atgcgctggc aaagttccgc
      121 actctcaaac tcgactgcca gcagcaagcc acgtccgtga atggctttga tagccggatg
      181 ctgcagttgt tggcgaatca gttgctcttt gttgtttatt cctgccattc gtaaagcctg
      241 ttcttccgag gtcgttggcc ggtcgtttgt cgtctgtcgt ccttggtctg tcgtccttgg
      301 tctgtcgtct tccatcattt ccaccaactc ctcaaacgcc gccaaccctg ccgcacagca
      361 aaccgggtgg cctgcaaagg tgctgatgtg tcccagcacc gggttgaagg tgagttggtt
      421 catgttttca cgggaggcaa tgaaggctcc cagtggcaaa ccgccaccaa gggctttgcc
      481 cagcaacagg atatcgggca caaccccgta ttgctgaaag gcccacaggg agcctgttct
      541 tccaaacccg gtttgtattt cgtcgaacac cagcaaggtg ccggtggcgg tgcatttatc
      601 gcgaagcgcc tgcaaccatt ccacgtttgc aggttgggcg cctgcttctg cctgcactac
      661 ttccactacc acgcaggctg ttttttcaga aatggtatcg atggcttcct gcgtattgaa
      721 atccacatgc aggatatcgg gcaataaagg ccggtaggca ttgcgccagt attcgccacc
      781 catgatgctt agtgcgcctt gtgtgctgcc gtgataggcg ttgttaaacg cgatgatctg
      841 gctgcggttg gtgatgcgtt tggccagttt cattgcgcct tctacagcct cggcgccact
      901 gttggtgaag tacacgcagt tgagactgtc gggcaaaaat tcagtcagcc ttttggcata
      961 ctgcacctgc ggcgtttcaa tgatctcgcc gtacaccatc aggtgcatgt agtcgtccac
     1021 ctgttttttg atggctgctt tcacccgctc attgccatgg cctatgttca tcacgctgaa
     1081 gccgctgatg aggtcgacat actgcctgcc ttcggtatcc cacatgtaaa tgccttgtgc
     1141 cttcacaatt tcaaggccga taggcgctgg cgaagtttgg gctacatgtt gtaaaaaaag
     1201 ctggcgttga ttcaatggca tgtgctgtaa tttgccttgc aaatctcatt gtaccaatta
     1261 ccaattccaa ataagctttc tcatgcctgt cattcttcct gtcaacggga tctctccccg
     1321 cctcggcgcc gattgttatg tagcacccaa tgccaccatt gtgggcgacg tgcaaatggg
     1381 cgatcagtgt tccgtttggt tcaacgccgt tattcgtggc gatgtgcact acatcaaaat
     1441 gggcaacaag gtaaatgtgc aggatggcgc ctgtatccat tgcacctatc ttaagcatcc
     1501 caccaatatt ggcaacaacg taagcattgg gcaccatgcc attgtgcatg gttgcaccat
     1561 tcacgatgat gtgctcattg gcatgggcgc catagtgatg gacggctgcg tggtggaaag
     1621 caacagcatc atagcggcag gggccgtagt attggagggc acccatgtgc cggctggcag
//
LOCUS       DATIQF010000604         6302 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_252887,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000604 DATIQF010000000
VERSION     DATIQF010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6302)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6302
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252887"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3270)
                     /locus_tag="VLL95_10240"
     CDS             complement(<1..3270)
                     /locus_tag="VLL95_10240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39281.1"
                     /translation="MANCNDNKNPLQRNGTSQQERLLPSLSPSSAPVMDKDPLQWMVW
                     GSRLSRQIRYYNSSNTATAGDSMEPFFASDIAARLAMLATHRLDIIPDYVREQLLILY
                     ENSNSSKTALLRKTFTSLFDVLLGYIQSVDSVYLQLLQFEQRQPGMLAGIDFPFQLRN
                     HMETRLLSVLQRSIAYYKAARTNSLTDVTIAEAIEVFNQPISTADAILNAGLSKMWWS
                     TNATWQDFMDSVAEEPSILGMAATVSGKIQHAAHHNFFTGLLDEVSASAAFLVSLAKE
                     VVKKLLDQWPNHDPQYALFLAWLYLLENARDGMNQLTARHLEFYYERVLRLKRRLPVA
                     DTAFLTLELNKAVNKTELLKGTVFIGGKDSAGKEIFYHATRTTVLNKASVASLQSLYL
                     SDDNDKIGATSQSGLLFASPIANSKDGLGAKLDSSLGEWHPFFNKTYDNGELVSINMP
                     KAQVGFAISSHYLRLKEGKRKITLRLDVNNESSLIGKKVAVYVTTEKEWLSVGTLSFT
                     AGTLNNGVGNAAVLTFTVAADKPAITGYVSKTHGHRFYTTEPVIKLVLPNDIANASAY
                     QQLLSITLNRVDLETQVGELTGSYNNEGLKDLQLQNDAGVVNASKPFQPFGNEPTKGN
                     ALIIGSDELFYKPNALVQLNLEWKDLPDKSASIQTSYENTTDYQSLNSTNGSDYCPWM
                     ELQYLQQGKWNTLQPNLNLFPLSPSPNSKPLPKAVVPASTALSGNLFLKADHPYQPYS
                     PSVNRGFLRLQLRHDFGHRNYRNKLGHYLIEKGKSNPNVTEPAAPYNPTLASLTISYN
                     AKCTLLPSASNQPMQWWHVAPFGEAKVAGAGVPLIAPLTQATSHNKAQASLFIGLSGV
                     GENETVSLLFQLMEGSENPLQAKPPVHIQWQYLSHNVWLPFEDGDVDDGTDQLIRSGI
                     IHFALPSGVNSSNSIMQPGLVWLRAQVQEAVDAVCKIIGIHANAIAVTRQLQEGSSVQ
                     SLMQPNGTISKMQQPDGMVKKVVQPYASFGGKPLESGDAYYIRVSERLRHKDRAITIW
                     DYERLVLQEFPEIYKVKCLNHTKLSGSVSEGNLEYNEVAPGHVTIITIPNLQQRNDAD
                     PL"
     gene            complement(3274..3723)
                     /locus_tag="VLL95_10245"
     CDS             complement(3274..3723)
                     /locus_tag="VLL95_10245"
                     /inference="COORDINATES: protein motif:HMM:NF016829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HSR39282.1"
                     /translation="MATPPTNDFIGKGWSFPPSFEPSSQSAAMTEQYDDIKRSLEILL
                     STRPGERLMQPKYGCNMEELLFESLDTGMKTLMADRIRTAILYFEPRIEAKKIELDDS
                     NQNEGVVLIRIEYIVSATNTRFNFVYPFYKNEATEMNFLTINHPLAV"
     gene            complement(3762..4052)
                     /locus_tag="VLL95_10250"
     CDS             complement(3762..4052)
                     /locus_tag="VLL95_10250"
                     /inference="COORDINATES: protein motif:HMM:NF017315.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAAR domain-containing protein"
                     /protein_id="HSR39283.1"
                     /translation="MGKPAARITDMHVCPMISGTVPHVGGPIMPPGCATVLIGGQPAA
                     RVGDLCTCSGSPDSIVMGSATVMIGGMAAARMGDSTAHGGSIVAGCPTVLIG"
     gene            complement(4098..5582)
                     /gene="vgrG"
                     /locus_tag="VLL95_10255"
     CDS             complement(4098..5582)
                     /gene="vgrG"
                     /locus_tag="VLL95_10255"
                     /inference="COORDINATES: protein motif:HMM:TIGR01646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tip protein VgrG"
                     /protein_id="HSR39284.1"
                     /translation="MFKGIVIRHSVKVRKNISMLVVECRHPAFKMTAHLKNAYFHDIS
                     DSDAGSQLCSAYGISLSSDGDYLQHKELVQFYSTDWDFMLCRAEANGAWVITNDDGTI
                     SMAPPDAAQEAVLTARFGATIKELDAEIDGRLQFDGWKAVGWSPEDQALLEDAEATDP
                     NSSIAGNLSAADLASSMNNSTQELRHNSLQENELKKWADASLQKSRLAKIRGRAKIDG
                     TASVLPGKTLEISGAGERFNGKVLVTGMRHQLEKNQWETIVQFGDNPSWHAETFRVHQ
                     PLAGALLPPVQGLHIGIVTDLEDPEGAERIKVRMPMVSATDDGAWMRLGSLDAGNNRG
                     WVFRPEVDDEVIVGFINNDPRFGVVLGKLHSAKNAAPIAAKNDNHEKGYVSRSEMKLH
                     FDDDKKLMMLSTPAGNSVQLDEENKCIKLQDQHGNKIEMNEEGIAIESIKEIKIKATT
                     ELNAEAGSNANIKASAQLKAEGSGGAELSAGGNTVVKGAMVQIN"
     gene            complement(5592..5846)
                     /locus_tag="VLL95_10260"
     CDS             complement(5592..5846)
                     /locus_tag="VLL95_10260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39285.1"
                     /translation="MPDENTIPSSQPRSGATFTILSEGEKLPASLPVLSLQVQREVNR
                     IAAATIMLQDGDAASGNFTASNGEWLIPGKQIEIKAGYRS"
     gene            complement(5873..>6302)
                     /locus_tag="VLL95_10265"
     CDS             complement(5873..>6302)
                     /locus_tag="VLL95_10265"
                     /inference="COORDINATES: protein motif:HMM:NF039279.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39286.1"
                     /translation="GNPRDSVEEDINTLRDLLLKYEGDIHEPKHFKVVWGSLLFKGRC
                     LGLNIATKLFNPDGKPIRAVCKVTFHGSLEDNLRVAEERRSSPDLTHYRVVKQGDTLP
                     LMCYRIYGSSHYYQQVARVNGLTNLRQLQPGMQLFFPPVK"
BASE COUNT         1279 a         1606 c         1664 g         1753 t
ORIGIN      
        1 caacggatcg gcatcattgc gctgttgcag attgggaatg gtgatgatgg tgacatgacc
       61 cggggccact tcgttgtatt ccaggttgcc ttcggataca ctgccactga gtttggtatg
      121 gttgaggcat ttcactttgt atatctccgg aaattcctgc agcaccagtc gttcataatc
      181 ccagatggta atggcccggt ctttatgccg caatcgttcg ctcactctta tgtaataagc
      241 atcaccgctt tccaagggct tgccaccaaa gctggcgtaa ggctgcacca ctttttttac
      301 cattccatcg ggctgttgca ttttggagat ggtgccgttg ggctgcatta atgattgtac
      361 agaactgcct tcctgcaact gccgagtcac cgcaatggca ttggcatgaa tgcctatgat
      421 cttgcataca gcatcaacgg cctcctgcac ttgtgcccgc aaccatacca gtcccggctg
      481 cataatactg ttgctcgaat tgacgcctga tggcaaggca aaatgaatga tgccggaacg
      541 gatcaactga tcggttccat catccacatc gccgtcttcg aagggcaacc acacattgtg
      601 gctcaggtac tgccactgga tatggaccgg tggcttggcc tgcaaaggat tttcactacc
      661 ctccatcagt tggaacaaca gggaaaccgt ttcattttct cccacccccg acaggccaat
      721 aaataagctg gcctgcgcct tgttgtggct ggtagcttgg gtgagtggtg ctatgagggg
      781 cacaccggca ccagcaacct ttgcttcacc aaatggcgct acatgccacc attgcatggg
      841 ttggttggaa gcggatggca gcaatgtgca tttggcatta tagctgatgg taagcgatgc
      901 cagggttgga ttgtaaggtg ctgccggttc tgttacattc ggattgctct ttcctttttc
      961 aataaggtaa tgacccaact tgtttcggta gttgcgatga ccgaaatcgt gccggagctg
     1021 caagcgcagg aaaccacgat tgacgctggg gctgtatggc tggtagggat gatctgcttt
     1081 taggaatagg ttgccgctca aagctgtgct ggccggaacg actgctttag gcagtggctt
     1141 gctgttggga gatgggctca gcggaaacag gttgaggttg ggctgcaggg tattccattt
     1201 tccctgttgc aaatactgca gttccatcca cgggcaatag tcactgccat tggtgctgtt
     1261 gagcgattga taatcggtgg tattctcgta tgaggtttgt atagatgcgc ttttgtcagg
     1321 caggtccttc cattcgaggt tcagctgcac caacgcattg ggcttgtaga acaactcatc
     1381 gctgccaatg atgagggcat ttcctttggt gggttcattg ccaaatggct ggaagggttt
     1441 ggaggcgttc accacgcctg cgtcgttttg cagttgaagg tctttgagtc cctcgttatt
     1501 atagctgccg gtgagttcgc ccacctgtgt ctccaggtca accctgttga gggtaatgga
     1561 cagcaattgt tggtaggcgc tggcattggc aatgtcattg ggcaatacca gtttaatgac
     1621 tggttcagtg gtgtaaaacc ggtgaccatg cgttttggac acatacccgg taatggctgg
     1681 tttgtcagca gcaacagtga aggtgagcac agcggcattg cctaccccat tgttgagggt
     1741 gcctgcggta aatgacagcg ttccaaccga cagccattct ttttcagtgg tcacataaac
     1801 cgctaccttt ttgcctatca gcgaactttc gttgttcacg tccaatcgga gtgtgatctt
     1861 tctttttcct tctttcaacc gcaggtagtg actggaaatg gcaaagccca cctgtgcttt
     1921 gggcatgttg atggaaacca actctccatt gtcatatgtt ttgttgaaga aggggtgcca
     1981 ttcacccagc gatgaatcca gtttagcgcc cagcccatcc ttgctgttgg caatgggcga
     2041 ggcaaacaac aaaccgcttt gcgaagtggc gccaattttg tcattgtcat cggacaggta
     2101 aaggctttgc agacttgcta ccgatgcttt gttgagcacg gtggttcggg tggcatgata
     2161 aaaaatttct ttcccagcac tatcctttcc accaatgaag accgttcctt tcagtagttc
     2221 ggttttattg actgctttgt tgagttccag cgtcaggaaa gccgtgtcgg ccacgggcaa
     2281 gcgtcgcttc agtcgtaata ccctttcgta ataaaattca aggtggcgtg cagtaagttg
     2341 gttcatccca tcccgggcat tttccaataa gtacagccac gccaggaaca gcgcatattg
     2401 cggatcatga ttgggccact ggtccagcag tttcttcacg acctcttttg ccagcgatac
     2461 caggaaggca gcggaggcgc ttacttcatc caataagcca gtgaaaaaat tgtgatgggc
     2521 agcatgctga atttttcctg acacggtagc ggccatcccc aaaatggagg gctcctccgc
     2581 cacgctgtcc ataaaatcct gccaggtggc attggtgctc caccacattt tgctgaggcc
     2641 ggcattaagt atggcgtctg ctgtagaaat gggttgatta aacacctcaa tggcttcggc
     2701 aatcgtaacg tcggtaagcg aatttgtcct cgctgccttg taataagcaa tgctgcgttg
     2761 taataccgac agcaagcgtg tttccatgtg attgcgcaac tggaagggga aatcaatacc
     2821 ggcaagcatg cccggttggc gttgctcaaa ttgcaggagt tgcaggtaaa cgctgtctac
     2881 gctttgtata taacccagca atacatcaaa gaggctggta aatgttttgc gcagcaaagc
     2941 ggtcttgctg ctgttgctgt tttcgtacag gatcagcagt tgctcccgaa cataatcggg
     3001 gataatatcg agccggtgtg tagcaagcat ggccagccgg gcagcgatgt ctgaagcgaa
     3061 gaagggctcc atgctgtcgc ctgcggtggc ggtattgctg ctgttgtaat aacgtatctg
     3121 ccggctcaat cggctgcccc ataccatcca ttgcaatgga tccttgtcca tcaccggcgc
     3181 actcgatggg cttagcgaag gcagcaggcg ctcctgttgg ctggtgccgt tgcgttgcaa
     3241 ggggttttta ttgtcgttgc agttggccat tgtttatact gccagcgggt gattgatggt
     3301 gagaaagttc atttcagtgg cttcattctt gtagaacggg tatacgaaat tgaagcgggt
     3361 gttggtggcg ctcacgatgt actctattcg gatgagcacc acgccttcgt tttgattgct
     3421 gtcatcgagt tctattttct tcgcttcgat gcgtggctcg aaatagagta tggcggtacg
     3481 tatgcgatcg gccatcaggg ttttcatccc ggtatccagg ctttcgaaaa gcagctcctc
     3541 catattgcac ccatatttgg gttgcatcaa tcgttcaccg ggtcttgtac tcagcaggat
     3601 ttcgagactg cgtttgatgt catcgtactg ctccgtcatt gctgcgcttt gcgaagacgg
     3661 ttcgaaggag ggaggaaagc tccagccttt gcctatgaaa tcgttggtgg gtggtgttgc
     3721 cattcttcaa tgattaggtg tggttcataa tggttcgttt ttcatccgat caatacagta
     3781 gggcaccctg ccactatgga gccgccatgt gctgtgctgt cgcccatgcg tgctgcagcc
     3841 atgccgccaa tcatcacggt ggccgagccc ataacaatgc tgtcaggtga ccctgaacag
     3901 gtgcacagat cacccaccct ggcagcaggt tgtccgccaa tgagtaccgt ggcacagccg
     3961 ggcggcatta tggggccgcc tacatggggc actgttcccg aaatcatggg gcacacatgc
     4021 atatcggtta tcctggctgc tggctttccc attgtttgat cctttgttta tttcaatttt
     4081 cgtttctgta ttcacgatca gttgatctgc accattgcac cctttactac cgtattgcct
     4141 cctgccgaca attctgctcc tccgcttcct tctgctttca attgggcact ggctttgata
     4201 ttggcattac tgcccgcttc cgcattcaac tcagtagttg cttttatttt gatctctttg
     4261 atgctctcga tggcaatgcc ctcttcattc atttcaatct tgttgccatg ctggtcctgc
     4321 agtttgatgc acttattctc ctcatcgagc tgcacactgt tgcctgcagg tgtgcttagc
     4381 atcatcagct ttttgtcgtc atcgaaatgc agtttcattt cgcttcggct tacatatcct
     4441 ttttcatggt tgtcattttt ggcggcgatc ggtgctgcat ttttggcact gtgcagtttg
     4501 ccaagcacca cgccaaaccg gggatcgtta ttaataaatc ccacaatcac ctcgtcgtca
     4561 acttcaggcc tgaacaccca gccacgattg ttgccggcat ccagcgagcc cagccgcatc
     4621 caggcgccat cgtcggtggc actcaccatg ggcatgcgca ctttgatgcg ttcggcccct
     4681 tcgggatcct ccaggtcggt aacgataccg atgtgcaggc cctgcaccgg gggcagcagt
     4741 gcaccggcca gcggctgatg taccctgaag gtctcggcat gccagctcgg gttatcacca
     4801 aattgcacga tggtttccca ttggtttttt tccaactggt gacgcatgcc tgtcacgagc
     4861 actttgccat tgaatctttc gcctgcgccg gaaatttcca gggtcttgcc ggggagcacc
     4921 gaggccgtac catcaatttt ggcacgtccg cgtattttag ccaggcggct tttttgcagg
     4981 gaggcatccg cccatttctt caattcattt tcctgcaggc tgttgtgccg cagttcctgg
     5041 gtgctgttgt tcatcgatga cgccaggtcg gctgccgaca ggttgccggc gatgctgctg
     5101 ttcgggtcgg tggcttcggc atcttccaac agtgcctggt cttccgggct ccagcctacg
     5161 gccttccatc catcaaactg caatcggcca tctatttccg catccagctc tttaatggtg
     5221 gcgccaaacc tggcggtcag cacggcttct tgtgcggcat cgggaggcgc catgctgatg
     5281 gttccatcat cattcgtgat cacccaggcc ccattggctt ccgcccggca cagcatgaaa
     5341 tcccaatcgg tgctgtagaa ctgtaccagc tctttgtgct gcaggtagtc accatcgctg
     5401 gaaaggctga tgccataagc gctgcagagt tgactgccgg catcgctgtc gctgatgtcg
     5461 tggaaatagg cattcttgag atgggcggtc attttgaagg ccgggtgcct gcattcaacc
     5521 accagcatgc tgatgttctt ccgcactttt acactgtgcc tgatcacaat tcccttgaag
     5581 atggtctctt cttagctgcg gtatcctgct tttatttcaa tctgttttcc cgggatcaac
     5641 cattcgccgt tgctggccgt gaaattgccc gaggctgcgt cgccgtcctg cagcataata
     5701 gtggctgccg ctatgcgatt tacttcgcgt tgaacctgca ggctcagcac cggcaggctg
     5761 gcaggcagtt tttcaccttc gctcaatatg gtgaacgttg cgccagaacg tggctgggaa
     5821 gatggtatgg tgttttcgtc aggcaagatg gagcatttgt tttgcggaat gtttatttca
     5881 ctggtgggaa aaagagttgc atacccggtt gcagttgccg caggttggtc aatccattta
     5941 ccctggctac ctgctggtag taatggctgg atccgtaaat gcggtaacac atcagtggaa
     6001 gggtatcgcc ctgttttacc acccggtaat gcgtgaggtc aggtgaactc ctgcgttctt
     6061 ctgccactct caggttgtct tcgaggctgc catgaaaggt gactttgcaa acagcccgaa
     6121 tgggtttgcc atcagggttg aacagcttgg tggcaatgtt caaaccaagg cagcgtcctt
     6181 tgaaaagcag gctgccccaa actaccttga aatgcttggg ctcgtggata tcgccttcgt
     6241 acttcagcag caggtctctt agcgtattga tgtcttcttc tacggaatcc cgtgggtttc
     6301 ca
//
LOCUS       DATIQF010000605         2595 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_55417, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000605 DATIQF010000000
VERSION     DATIQF010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2595
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55417"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..323
                     /locus_tag="VLL95_10270"
     CDS             <1..323
                     /locus_tag="VLL95_10270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39287.1"
                     /translation="LLQITNLPAIHYGRQLRCLANGTDAGSVYTLTFGTTWTATLNSN
                     WSQGSNWSCGTPPDRNVDVYLPGNLVPFPTVDIPEAEARSVWLRNGARLQVPPGNRII
                     IGNK"
     gene            complement(421..1473)
                     /locus_tag="VLL95_10275"
     CDS             complement(421..1473)
                     /locus_tag="VLL95_10275"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR39288.1"
                     /translation="MELLDISLQARVIIGITAMVLLFTGFLVVFVTNQRKKLLYHKNL
                     QEMQEQQKEALLQQNALLEQRVKERTIELSEQKDALQVALSELKASQLQLVQKEKMAS
                     LGELAAGVAHEIQNPLNFVLNFSDISADMVDELKERMEADDLPAGFKAEMQPLANDIA
                     DNMRKILQHGKKADGIVKNMLQHTRVQNSKPELTDLNELVSEHLKLAYHQFRTRHKSF
                     ACTFNTALDGEVGKLYVGPQEIGHALTNLLNNAFYAMAEKAKKGMDSYEPALSVTTRR
                     LEKKVLVEIADNGQGMDEKIIHKIFQPFFTTKPTGEATGLGLSLTYDIIKAHQGEIEV
                     ESKAGEYAKFKIILPA"
     gene            complement(1442..2122)
                     /locus_tag="VLL95_10280"
     CDS             complement(1442..2122)
                     /locus_tag="VLL95_10280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39289.1"
                     /translation="MFTTLRSLLDWSEVWALLMPFAALYLQRRQPPALKPVIWYAVLA
                     FAINLGIDLNIPFKNYYPSWLQSNNPLYNVHSITRFVCFSIYFVRLPEMKYKGMVRLL
                     SNLSFVFLLVNFTFFEKFYNYNSFSSNLFTAEAFVLLVYCMLYYLSELQDDDRNLFRT
                     PHFWVVTGLSIYVVTNFFVFLFYEPMIELDVELALNIWNLHNISFIVFCLFIAKAFYG
                     APRYQLAG"
     gene            2258..>2595
                     /locus_tag="VLL95_10285"
     CDS             2258..>2595
                     /locus_tag="VLL95_10285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39290.1"
                     /translation="MKLLNSRIALLFTLVGLLLLACADNSKKLELKASTVQIWFTKNV
                     NATKRLPVLWIEKDSIDKLGNVNLYFTYVLDASDNSLTLHGWPTKMKLGGGLKFDTLD
                     ADLVRLNKSGS"
BASE COUNT          649 a          660 c          598 g          688 t
ORIGIN      
        1 atttgttgca aataaccaac cttcctgcca tccactacgg ccgccaactt cgctgcctcg
       61 ccaatggcac cgatgcaggc tctgtttata cgctcacctt cggcactacc tggacagcca
      121 cgttgaacag caactggagc caaggcagca attggagttg tggcacgccc cccgacagaa
      181 atgtggatgt atacctgccc ggcaacctgg ttccctttcc cactgttgat atacccgagg
      241 ctgaagcccg cagcgtgtgg ctgcgcaatg gagcccgctt gcaggtaccg cctggcaacc
      301 gtatcatcat cggaaataaa taatccaaag ttgccgtgct tcatgcccct ccggaaaatc
      361 tccgggcctg ctacctattt agcggcaccc caggagatca agccgaaaat ttcactggct
      421 ttatgccggc aaaatgatct tgaacttcgc gtactcgccg gctttgcttt caacttcaat
      481 ttcgccctgg tgcgccttga tgatatcgta agtgagcgat aagcccaggc cggtggcctc
      541 acccgtgggc ttggtggtaa aaaagggttg aaagatcttg tggatgatct tttcatccat
      601 gccttgcccg ttgtccgcta tttcaaccag cactttcttt tccagtctgc gagtggttac
      661 tgacaaggcc ggctcataac tatccatccc ttttttcgct ttctcggcca tggcataaaa
      721 agcattgttc aacaagttgg tcaacgcatg ccctatctcc tgcgggccta catacaactt
      781 gcccacttcg ccatcaagcg ctgtgttgaa ggtgcaggcg aagcttttgt gccgggtccg
      841 gaattgatga taggccagtt tgagatgctc actcaccagt tcattcaggt cggtcagttc
      901 cggcttgctg ttttgcaccc tggtgtgttg cagcatattc tttacgattc catcggcttt
      961 cttgccatgc tgcaagatct ttcgcatgtt gtcggcaatg tcgttggcca atggctgcat
     1021 ttctgcctta aaaccagccg ggaggtcatc ggcttccatt ctttctttca actcatcaac
     1081 catatcggcg ctgatgtcgc tgaagttgag cacgaaattc aacgggttct gtatttcgtg
     1141 tgccaccccc gccgccagtt cacccagcga ggccatcttt tccttctgca ccagctgcag
     1201 ctgactggcc ttcagttcgc tcagcgccac ttgtagtgcg tccttctgtt ccgacaattc
     1261 aatggtgcgc tctttcaccc tttgttccag caatgcattt tgctgcagca atgcttcctt
     1321 ttgctgttcc tgcatttcct gcaggttctt gtggtacagc aatttctttc gctggttggt
     1381 tacgaatacc accaggaatc cggtaaacaa aagcaccatg gccgtgatgc caatgatgac
     1441 cctagcctgc aagctgatat cgaggagctc catagaatgc ttttgcgatg aataaacaga
     1501 atacgatgaa tgatatgttg tgaaggttcc agatgttcaa tgccagttca acatccagct
     1561 caatcatggg ctcataaaaa aggaacacaa agaaattggt gaccacataa atgctcaaac
     1621 ccgtgaccac ccagaaatgg ggtgtccgga agagattcct gtcatcatcc tgcaattcgg
     1681 acaagtaata gagcatgcag tataccagca acacaaatgc ttcggcggta aacaggttgc
     1741 tgctgaagga attgtaattg taaaacttct cgaagaaggt gaagttaacc aacagaaata
     1801 cgaaagagag atttgaaagc aatcgcacca tccccttata cttcatttcg ggcagacgaa
     1861 cgaagtagat gctgaagcaa acaaagcgag tgatggaatg cacattatag agtggattat
     1921 tgctttgaag ccaggaagga tagtagtttt tgaaggggat gttcagatcg atgccaagat
     1981 tgatcgcaaa tgccaacact gcataccaga tcacgggttt taaggcaggt ggctgtcgcc
     2041 tttgcaaata cagcgctgca aatggcatca gcagcgccca cacctctgac caatcgagaa
     2101 gcgatctcag cgtcgtaaac attggcttca ggttataaat gatgagtgat agggcataag
     2161 tataaggttg tcattgcggc ttcattgctt tgaaattaaa aaaattaatg agtatttttc
     2221 tgcatacttt ttttcatcac caccctaaac cgtttttatg aaactcctca actcacgcat
     2281 tgccctgctt ttcaccctcg ttggcctgct acttttggcc tgtgctgata atagcaagaa
     2341 actcgaactg aaggcaagca cagtgcagat atggttcacg aaaaatgtca acgccacaaa
     2401 gcggctcccg gtattatgga tcgaaaagga ttcaattgac aagctcggca atgtgaattt
     2461 gtacttcact tatgtgttgg atgcatccga taacagcctg accctgcacg ggtggcctac
     2521 caaaatgaag cttggcggtg gcctgaaatt tgacacgctg gatgctgatc tggttcgcct
     2581 taataaaagt ggatc
//
LOCUS       DATIQF010000606         3502 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_100775,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000606 DATIQF010000000
VERSION     DATIQF010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3502
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100775"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..738)
                     /gene="speB"
                     /locus_tag="VLL95_10290"
     CDS             complement(<1..738)
                     /gene="speB"
                     /locus_tag="VLL95_10290"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR01230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008783 - agmatinase activity [Evidence
                     IEA];
                     GO_process: GO:0008295 - spermidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HSR39291.1"
                     /translation="MINLLGIPFDANSSYLRGPALAPARIRQMDAEDSANRFAENGME
                     IIPGITYHDLGDLSFTSEDPAYAFQFIRSEVKKHLSSGHPLLCIGGDHSISYPVIDAH
                     TDVFNDLHVLHFDAHTDLYENFENNPYSHASPFARLMEQGKIQSLLQVGIRTLTSHQR
                     EQAHRYRVDIIEMKDLHFDFLQQLPSPLYISLDVDVLDPAYAPGVSHHEPGGMSTRQL
                     LHMLQHIKATVVGADLVEYNPTRDVNNM"
     gene            complement(916..2502)
                     /locus_tag="VLL95_10295"
     CDS             complement(916..2502)
                     /locus_tag="VLL95_10295"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HSR39292.1"
                     /translation="MNRSGIYPRPEPKYAGKLARNFSIFDAELAKHPQVRTAAFHSMV
                     HGQSVQQLQQLMHSNKLSTVELILYYVHRIRQYDEGLLNSIIELNPDALSIAAKLDAN
                     RKTRKAPGVLHGIPVLLKDNIATADKMHTSAGTAALKAWKPSKDAALVQQLRRQGAII
                     FGKANMSEWANYMDPCMPSGFSTNGGQTRNPYGPYDTWGSSSGSAVAVASDFVTVSIG
                     SETQGSIIMPAGINSIVGLKPSMGLISGEGVVPLMLFQDVAGPMGRTVEDVAVLLTAL
                     AANNDLSRDYRQAMTDQKKWKVGLPDYSGPVMESLMRRLPATADSAARARSKSFYEGE
                     QVKAMQQKADFEKAGLTVVSIPAYDLPNGLNVGPLLQHGFKRDLNAFLKNLGKEAPFQ
                     SLEEIIAWNKADSINRAPYGMGHLINAQNNTMSDAAYDSATAEHLKRARAGIDGLLNR
                     YGVDVIASTMSQIYAPAGYPALAVPSGYAANGQPNWIVLVSGMLMEYELLGVGHRYEQ
                     ATKARKDPDLDKTVEALRKM"
     gene            3013..>3502
                     /locus_tag="VLL95_10300"
     CDS             3013..>3502
                     /locus_tag="VLL95_10300"
                     /inference="COORDINATES: protein motif:HMM:NF020892.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HSR39293.1"
                     /translation="MKDHKRILVTAALPYANGPVHVGHLAGCYLPADIYVRWERARKK
                     DIKFIGGSDEHGVPITIRAMKEGVTPQDVVDKYHAIIKDSFEKLGISFDVYSRTSNKV
                     HHETSADFFKKLYDDGMFEEKETEQYYDEEKETFLADRYITGTCPVCSNPNAYGDQCE
                     KCG"
BASE COUNT          787 a          903 c          965 g          847 t
ORIGIN      
        1 catgttgttg acatcgcggg ttggattgta ttccaccaaa tcggcgccga ccacagtggc
       61 tttgatgtgc tgcagcatgt gcagcaactg gcgggtgctc atgccgccgg gttcgtggtg
      121 cgatacgccc ggtgcatatg ccggatccag tacatctaca tccagtgaaa tgtacaaggg
      181 tgatggaagc tgctgcagaa aatcgaaatg caggtctttc atttcgatga tgtccacccg
      241 atagcgatga gcctgttcgc gttgatgact tgtaagtgta cgaatgccta cttgcaacaa
      301 cgattggatt ttgccctgct ccatcagccg ggcaaaaggc gatgcgtggc tgtaaggatt
      361 attctcaaaa ttttcgtaga gatcggtatg cgcatcaaaa tgcaatacgt gcaggtcgtt
      421 gaacacatcc gtatgcgcat caatcacggg gtaagaaatg ctgtgatcac caccgatgca
      481 gagcaaagga tgaccgctgc tcaaatgctt cttcacctcg cttcgtatga attgaaaggc
      541 atatgccgga tcctcgctgg tgaatgacag gtcgcccagg tcatgataag tgataccggg
      601 aatgatctcc atcccatttt cggcaaagcg attggcggaa tcctctgcat ccatttgcct
      661 gatgcgagcc ggcgctagtg caggcccacg caggtaagat gagttggcgt cgaagggtat
      721 gccgaggagg ttgatcattt gttggttgct tgttgttggt tgcttgttgt cggttgcttg
      781 ttgtcggttg cttgttgtcg gttgagaaag caaaggtcgg gatgattgat ggaaatgtgt
      841 tctccaccag gttcaccatg aatccttgtg catccttcgt gtcttagtgg ttaattcccg
      901 gaggcaaatt gcattttaca tttttcgcaa ggcttctacc gtcttgtcca ggtctggatc
      961 cttgcgggcc ttggtggcct gctcgtagcg atggcctact ccaagcaatt catattccat
     1021 caacatgcca ctcaccagca cgatccagtt gggctgccca ttggcagcat agcccgatgg
     1081 cactgccaat gcaggataac cagccggtgc atagatctgc gacatggtgg aagcaatgac
     1141 atccacgcca taacgattca gcaaaccatc gatgccggca cgggcacgct tcaggtgttc
     1201 ggccgtggcg ctatcataag ccgcgtcact catggtattg ttttgcgcat tgatgagatg
     1261 ccccatgcca taaggtgccc ggttgatgct gtcggctttg ttccatgcaa tgatctcttc
     1321 gagtgattga aaaggcgctt ctttgcccag gtttttcagg aaggcattca ggtcacgctt
     1381 gaagccatgc tgcagcaacg gacctacatt caaaccattg ggcagatcat aggcaggaat
     1441 actcacgacg gtgagacctg ctttttcgaa atcggctttt tgctgcatag cttttacctg
     1501 ctcgccttcg taaaacgatt tgctgcgggc cctggctgca gaatcagctg ttgcaggcag
     1561 tcgcctcatg aggctttcca tcacagggcc gctgtaatca ggcagtccca ctttccattt
     1621 tttttgatcg gtcattgcct ggcggtagtc gcggctgagg tcgttgttgg cggccagcgc
     1681 cgtgagcaac acggccacat cttccacggt acggcccatg ggtcccgcca catcctggaa
     1741 cagcatgagt ggtaccacgc cttcgccact gatgaggccc atgctgggct tgaggcccac
     1801 aatgctgttg atgcctgccg gcatgatgat ggagccttgg gtttcgctgc cgatgctgac
     1861 tgttacaaaa tcggaagcca ctgccacggc gctgccgctg ctgctgcccc aggtatcgta
     1921 agggccataa gggttgcggg tttggccgcc attggtgcta aagccgctgg gcatgcaagg
     1981 gtccatgtag ttggcccatt cgctcatgtt ggccttgcca aaaatgatgg cgccctgcct
     2041 gcgcaattgc tgtacgagtg ctgcatcctt tgatggcttc catgctttga gtgctgcggt
     2101 gccggcactg gtatgcatct tatcggcagt ggcaatattg tctttcagca aaactggaat
     2161 gccatgaagt acgcccggcg ctttgcgtgt tttgcggtta gcatccagtt tcgcggcaat
     2221 gctgagtgca tcggggttga gctcgatgat gctgttgagc agcccctcat cgtattgcct
     2281 gatgcgatgc acataataca ggatcagctc tacagtactg agcttgttgc tgtgcatgag
     2341 ttgctgcagc tgctgcacgc tttggccatg caccatgctg tgaaaagccg ctgtccgcac
     2401 ctgcgggtgc ttcgccagtt cggcatcgaa gatggaaaag ttgcgggcca gtttgccggc
     2461 atacttaggc tcgggccggg ggtagatgcc agagcgattc atgcaggggt tggtgggctg
     2521 ggcccatgcc gcaagcaagc ataaattcaa agccaaaata caagtcgtca gtcgggcaat
     2581 agttttgtgc aggctcatga gatatggtaa ttaatgatca agtttagtga aagacaataa
     2641 tgcaattgta gaatgttgaa taagacgtgt ttgttcgaaa ggtccgttag atgcaccagc
     2701 cgaacaagca aacatagctt gggggtgaac gtaagcggcg atttgccctg cgctgattcc
     2761 cggcccaagg gctgcggtgc ccggcatgta aaccctcacc cccgcctctc cctgaaagga
     2821 gaggcgcaaa gaccgtctcc caggctttcc ttctttcgga cttcacggct cctactccca
     2881 cccgccaaat cagacatcag acatctgaca tcagccatgc cactgtctcc ggactcccaa
     2941 ctaccaactg cgaaggctta tctttgccgc ccggccgaat gggccggatt tttttaagaa
     3001 ggaacaagac aaatgaaaga tcataaaaga atactggtaa cggcagcact gccctacgcc
     3061 aatggccccg tgcatgtggg ccacctggcg ggctgctacc tgccggcgga tatttatgtg
     3121 cgctgggaaa gggcccgcaa aaaggacatt aaattcatag gcggcagcga tgagcacggt
     3181 gtgcccatca ccatccgcgc catgaaggaa ggcgtgacgc cacaggatgt ggtggacaag
     3241 taccacgcca tcattaagga cagttttgaa aaactgggca tcagcttcga cgtgtacagc
     3301 cgcacttcca ataaagtaca ccacgaaact tcggccgact tcttcaagaa gctgtacgac
     3361 gacggcatgt ttgaggaaaa ggaaaccgag cagtattatg acgaagagaa agaaaccttt
     3421 ttggccgacc gctacatcac cggcacctgc ccggtgtgca gcaatcccaa tgcctacggc
     3481 gaccagtgcg aaaaatgcgg ca
//
LOCUS       DATIQF010000607         3133 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_237995,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000607 DATIQF010000000
VERSION     DATIQF010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3133
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237995"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..257
                     /locus_tag="VLL95_10305"
     CDS             <1..257
                     /locus_tag="VLL95_10305"
                     /inference="COORDINATES: protein motif:HMM:NF016150.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF418 domain-containing protein"
                     /protein_id="HSR39294.1"
                     /translation="SLAAVGQMAFTNYITHSIICNFIFLGYGLSMYGKLHRHELYYIV
                     IGIWIFQLIASPIWLSYFRFGPLEWAWRSLTYWERQPFKK"
     gene            317..1120
                     /locus_tag="VLL95_10310"
     CDS             317..1120
                     /locus_tag="VLL95_10310"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HSR39295.1"
                     /translation="MEILQKLVAIDLNYIIAGLMVLIYSLERLMENQIKASNPSAHWV
                     NNFVFQVIFFGLNFLWAYVVVYCIEWLNSREIGLFYMVDMPYWVKIILGVAMFDFVTY
                     WFHRLGHVVPLLWRFHRVHHSDTQMDASTNFRGHPMEIFLWFGIGNLLAAALFGLDLF
                     TFGVYFLVATPIFFLEHANLRFPVWLDKTLGLVFTTPNLHKIHHDQDRHYTDSNFSDI
                     FILWDRLFGTYTYKPVDQIKPGLEEFDTPERQTFWYLLKTPFLNIKKPQ"
     gene            1127..1573
                     /locus_tag="VLL95_10315"
     CDS             1127..1573
                     /locus_tag="VLL95_10315"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSR39296.1"
                     /translation="MRHFLCLTILSVALSGLAAQPISAGEKNVQQTIEKLFAALSDGD
                     TAAMKTLVTTDVRFYEYGQIWTLDTLTRKVMQAKSIPGFKRSNRFEFVRTRMQHETAW
                     ATYYLTSVFTRNGKEETVKWMETVVLVKEKKSWKVDVLHSTNLTQK"
     gene            1584..3059
                     /locus_tag="VLL95_10320"
     CDS             1584..3059
                     /locus_tag="VLL95_10320"
                     /inference="COORDINATES: protein motif:HMM:NF006560.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR39297.1"
                     /translation="MKQILTLAVFLFSMHAWTQSPIVYDVVLAGGRVMDPETKMDAVR
                     NVGILNNRIAQISSEPLQGKQVVNVAGLVVAPGFIDLHVHGRSNVEQEYQLHDGVTTA
                     LELEWGIEYLKEWYESRKSKALINYGASVCWPFERFKAMSKYKSTADELYQVVLKGES
                     SIETRNVKIMPSFLEKPTADELSKTLDNIKTSLADGGIGIGVPIGYLPKTNPGEMFSV
                     FKLAGQLNALVYTHTREPNLLTIQEVIADAVLTGAPLHIVHINSMALGNIELAINMVN
                     DARKKGFDISSELYPYTAGSTLLQSAMFNDGWQERMNISYNDLQWVATGERLTKESYE
                     RYKQEGGVVILHVMKPEWIKTGIAAPGIMIASDGMPYAKLAHPRTAGTFSRVLGKYVR
                     EEKVIDLMTALEKMTLLPARRLENIAPMMRFKGRIQVGADADITIFNPETVTDKATFE
                     KGLAFSEGVEHVVVNGTFVLKNGTTVQGVMPGQPVYGKFKK"
BASE COUNT          872 a          731 c          739 g          791 t
ORIGIN      
        1 aatctctggc agctgtggga caaatggctt tcaccaacta catcacgcat tccatcattt
       61 gcaatttcat tttcctcggt tatggtcttt cgatgtacgg caaactgcac cgtcacgaat
      121 tgtattacat cgtgatcggc atttggattt tccaattgat cgcaagtccc atttggctca
      181 gttatttccg gttcggcccg ctggaatggg cctggcgcag tctcacctat tgggaaagac
      241 aacccttcaa aaaataatct gccggcaacc ataaatccat aatgcgaccc tcattgctaa
      301 aatcaaaatt cagaccatgg aaattttaca aaaactggta gcgatcgatc tcaactacat
      361 aatcgccggc ctgatggtgc tcatttacag ccttgaacgc ttaatggaaa accaaatcaa
      421 ggcgagcaac ccatctgcgc actgggtcaa caacttcgtt ttccaggtca ttttctttgg
      481 tctcaatttt ctctgggctt atgtagtggt ttactgcata gaatggctga acagcaggga
      541 gattggtctc ttttacatgg ttgacatgcc gtattgggtg aagattattt tgggtgtagc
      601 catgtttgat ttcgtcacct actggtttca ccgccttggc catgtagtgc cgttgctgtg
      661 gcgctttcac cgggtgcatc acagcgatac gcaaatggat gcgtccacta atttccgcgg
      721 gcaccccatg gaaatattcc tttggtttgg catcggcaat cttttggcag ctgcactgtt
      781 cggcctcgat ctcttcacgt ttggcgtgta tttcctggtc gccacaccga tattcttcct
      841 ggagcatgcc aacctgcgct tcccggtatg gctcgacaaa acattgggtc tcgtattcac
      901 cacgcccaac ctgcataaaa ttcatcacga ccaggaccgc cactatactg attccaactt
      961 ctccgacatc ttcattttgt gggacaggct ttttggcact tatacctata aacccgttga
     1021 ccagataaaa cccggcctgg aagagtttga tactcctgaa cgacagacat tctggtactt
     1081 gctgaagacg ccgtttttaa acatcaaaaa gccgcagtaa acaagtatgc gtcatttcct
     1141 atgtctcacc atactgtctg ttgccctgtc cgggctagct gcacagccca tcagtgccgg
     1201 tgaaaaaaac gttcaacaaa ccatcgaaaa gttatttgcc gcattatccg atggcgatac
     1261 ggcagctatg aaaacattgg taacaaccga tgtccgcttt tatgaatacg gccagatctg
     1321 gaccctggat accttgacca ggaaggtaat gcaagcaaaa tcaattcccg gtttcaaacg
     1381 cagcaaccgt tttgaattcg taaggactcg catgcaacat gaaactgcat gggcgaccta
     1441 ctacctcact tcggtcttta cccgcaatgg aaaagaagaa acagtgaagt ggatggaaac
     1501 ggtggttttg gtaaaagaaa agaaatcatg gaaagtggat gtgttgcact ccaccaattt
     1561 gactcaaaaa taaaacgaca cgcatgaagc aaattcttac actggctgta ttcctgtttt
     1621 ccatgcatgc atggacccaa tcaccaatcg tgtacgatgt tgtattagct ggcggccgtg
     1681 tgatggaccc tgaaaccaaa atggatgccg tccggaatgt aggcatcctc aacaatcgca
     1741 ttgcgcaaat cagcagtgag ccattgcagg gaaagcaggt ggtgaatgtt gccggcctgg
     1801 tagtcgctcc cggttttatt gatctgcatg tgcacggcag aagcaatgta gagcaggagt
     1861 atcaattgca tgatggggtg accacggcat tggaattgga gtggggcatt gagtacctca
     1921 aggaatggta tgaaagcagg aagtcgaagg ctttaatcaa ttacggcgcc agtgtttgct
     1981 ggcctttcga gcggtttaaa gccatgagca aatacaaatc cactgcggat gaattgtacc
     2041 aggttgttct aaaaggcgaa tcatcgattg aaaccaggaa tgtgaagatc atgccttcct
     2101 tcctggaaaa gcccacagcc gatgaattga gcaaaacact ggataacatc aaaacttcac
     2161 tggcagatgg cggcattgga ataggtgtac ccatcggtta cctgcctaaa acaaatcctg
     2221 gcgaaatgtt ctccgtgttc aaactcgccg ggcagctgaa cgcgttggtg tatacacata
     2281 cccgtgaacc caatctgtta accatccagg aagtgatagc cgacgcggtg ctcaccgggg
     2341 caccattgca cattgtgcac atcaacagca tggcgctggg caatattgaa ctggccataa
     2401 acatggtaaa tgatgcccga aaaaaaggat ttgatatttc atcagagctg tacccgtata
     2461 ctgccggttc caccttgttg caaagcgcca tgttcaacga tggctggcag gaaagaatga
     2521 acatttcgta taatgatttg caatgggtag ctaccggcga aaggcttacg aaagaaagct
     2581 atgaaagata taagcaggaa ggcggtgtag tgatactgca tgtcatgaaa cccgaatgga
     2641 ttaaaacagg aattgccgct cccggcatca tgattgcttc cgatggaatg ccttatgcaa
     2701 aactggcaca cccccgcact gccggaacct tttcaagagt actcggcaaa tatgtacggg
     2761 aagaaaaagt gattgacctg atgactgctc ttgaaaagat gacgctgctg ccagccaggc
     2821 gtttggaaaa tatcgctccc atgatgcgct tcaaaggaag aatacaagtg ggagccgatg
     2881 cagacattac cattttcaat ccggagactg taacagacaa agcaaccttt gaaaaaggcc
     2941 tggcattttc cgaaggggtg gaacatgtgg tggtgaatgg aactttcgta ttgaagaatg
     3001 ggactacagt gcaaggcgtg atgccgggac agcctgttta tggtaagttt aagaagtaaa
     3061 ttgctgttgt caacaaggga accattcaat tagaaacaaa ctgcccagta gttatgcaac
     3121 gcagaacatt cct
//
LOCUS       DATIQF010000608         2633 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_192205,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000608 DATIQF010000000
VERSION     DATIQF010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2633
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192205"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..946
                     /locus_tag="VLL95_10325"
     CDS             <1..946
                     /locus_tag="VLL95_10325"
                     /inference="COORDINATES: protein motif:HMM:NF012497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39298.1"
                     /translation="MHFFEEVLPQLGVEVRTNDGKVPMEVKGPLVPKNITVDGSLSSQ
                     FLTGLLMAYAAANANGVTITVNDLKSKPYIDLTLQVMKQFGLKTPVNHNYQQFVFAEE
                     TNEPSASQDAYTVEGDWSGAAFLLVAGAVSKHIRVEGIYNTSRQADKKIIDAILDAGA
                     HLKVEDDAVEVSRHTLEAFQFDATDCPDLFPPLVALAANCEGVTQIRGLRRLKHKESD
                     RGATLQEEFAKLGVRIDLKDDIMLVYGTGQVQVKNFTLNSHHDHRIAMAVAVAAINAD
                     FPVSIRNADAVNKSYPDFWKHLSALGISVQIEKQQVPS"
     gene            956..2245
                     /locus_tag="VLL95_10330"
     CDS             956..2245
                     /locus_tag="VLL95_10330"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: protein motif:HMM:NF013432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HSR39299.1"
                     /translation="MNQFGKLFRVSIFGESHGPCVGITIDGLPAGLPLSIEDFLPDLE
                     RRKGGTQKGTTPRQEDDIPIFQTGLFQGRTTGAPLTIIFENKNTRSGDYQKQRAVPRP
                     GHADWTAHQKYGGFEDFRGGGHFSGRLTVCLVAAGVIAKKLLAPASIVSTIVEIGGES
                     DTAAGLEKAIAAKDSVGGIVDCTIKGLPAGLGEPFWDSAESLISHAVFAIPAIRGIEF
                     GTGFAAARMYGVDHNDAITDQAGTTATNHAGGVVGGITNGNDICFRVAVKPTSSTPKD
                     QFTLNWETGEMETFSVKGRHDLCIALRVPPVLEAVAAIVMADLMIMEQHIPRVWKSPI
                     YHITTRDAWQQALESGQYRAPSLETEGFIHASNEHQVEVVLQRFYAGQSGLLKLTIDP
                     SRLVAPLKYEGASDVNEKFPHVYGPINTSAVIAVDEI"
     gene            complement(2320..>2633)
                     /locus_tag="VLL95_10335"
     CDS             complement(2320..>2633)
                     /locus_tag="VLL95_10335"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HSR39300.1"
                     /translation="ANYYRLRQVDRDGSFAYSKVVNVDWSGKPLLSVYPNPTKDLLYV
                     SGLQKGDQIQIIDFAGKVLQTLLSAGESMNVNVRSLPTGTYILRAGQKDQFASSTFVK
                     E"
BASE COUNT          685 a          612 c          668 g          668 t
ORIGIN      
        1 catgcatttt tttgaagaag tactgccgca actgggagtg gaggttcgta ccaatgatgg
       61 caaagtgccg atggaagtaa aaggtccttt ggtaccgaag aatatcacgg ttgatggatc
      121 gttgagttca caattcctca ctggattgtt gatggcatat gctgccgcca atgccaatgg
      181 tgtcaccatc accgttaatg atctcaaaag caaaccttac atcgacctaa ccctgcaggt
      241 gatgaagcaa tttggtttga aaacacctgt caatcacaat taccaacaat ttgtttttgc
      301 agaggaaacg aatgaaccat ctgcttctca agatgcctac accgttgaag gcgattggag
      361 tggggcagcc tttctgttgg tagcaggagc tgtttcaaag cacatcaggg tggaaggcat
      421 ctacaataca tcgcgacagg ccgataagaa aatcattgat gccattttgg atgctggcgc
      481 ccacttgaag gtggaagatg atgccgtgga agtttcacgc catacactcg aggcttttca
      541 attcgacgcc actgattgtc ccgatttgtt tccgccactg gtggcactgg ctgccaattg
      601 cgaaggcgtc acccaaataa ggggtttgcg caggttgaag cacaaggaga gcgacagggg
      661 cgccactttg caggaagagt ttgccaagct aggtgtgcgt attgatttga aggatgatat
      721 catgctggta tatggaaccg ggcaggttca ggtgaaaaat ttcacgctga attcgcatca
      781 cgaccaccgc attgccatgg ccgtggccgt tgccgcaatc aatgccgatt tcccggtcag
      841 cattcgaaat gccgatgcgg tgaacaaatc ctatcccgat ttttggaagc acttgagtgc
      901 attgggcatc tcagtgcaaa ttgaaaaaca acaggtacct tcctaaatac tttgtatgaa
      961 ccagtttgga aaactatttc gggtaagcat atttggtgaa tcgcacggtc cttgtgtagg
     1021 catcactatt gatggcttgc ctgcagggct gccactttcc attgaagatt ttttgcctga
     1081 cctggaacgc aggaagggtg gcacgcaaaa aggtaccaca ccacggcagg aagatgatat
     1141 tcccattttt caaaccggcc tgttccaggg cagaaccaca ggcgctccac tcacgatcat
     1201 ttttgaaaac aagaataccc ggagtggcga ttatcaaaag caaagagcgg tgccgaggcc
     1261 tggccacgcc gactggactg ctcatcagaa atatggcggt tttgaagatt tcagaggggg
     1321 aggacatttc agcggcagat tgacagtttg tttggttgcg gctggtgtta tcgccaaaaa
     1381 gctattggca ccggcttcca tcgtatccac cattgttgaa atcggaggcg agtcggatac
     1441 tgccgcaggt cttgaaaaag ccattgctgc caaagattcc gttggtggca ttgtagattg
     1501 tactatcaaa ggtttgcctg ccggtttagg ggaacctttt tgggattcag cagagtcttt
     1561 gataagccat gctgtgtttg ccatcccggc tattcgcggt atagaatttg gaactgggtt
     1621 cgctgcagcc cgcatgtacg gtgtagatca taatgatgcc atcaccgacc aggcaggcac
     1681 tactgccact aatcacgccg gcggcgtggt aggcggcatt accaatggga atgatatttg
     1741 tttccgggtt gctgtcaaac ccacttcttc cactcccaag gaccagttca cccttaattg
     1801 ggagacaggt gaaatggaaa cgttctctgt caagggccgt catgatcttt gcattgcctt
     1861 acgggtgcca cccgtgctgg aggctgtggc ggcaatcgta atggccgacc tgatgatcat
     1921 ggagcaacat atcccacgtg tttggaaatc gccaatctac cacatcacta ccagggatgc
     1981 ctggcaacaa gcattggaat ctggtcaata cagggctccc tctttggaaa ctgaaggatt
     2041 catacatgcc agtaatgaac accaggtaga agtggtgctg cagcgatttt atgccgggca
     2101 atctggtttg ttgaaactta ccattgatcc ttctcgtctg gtagcaccgc tgaaatacga
     2161 aggtgccagc gatgtgaacg agaagtttcc ccatgtttac gggcccatca ataccagcgc
     2221 cgtgatagcg gtggatgaga tataaatctg gatgctggta aaatgaaaac agcccgatgt
     2281 atgagattac atcgggctgt tcctttcaat cagaatcaat tattctttta caaatgtgct
     2341 gctggcaaat tgatcctttt ggcctgcccg gagaatatag gttccggtag gcaaggaccg
     2401 tacattaaca ttcattgatt cgcctgcact cagcaaagtc tgcaacactt ttcctgcgaa
     2461 atcaatgatc tgaatttgat cacctttctg caaaccggat acatacagca agtccttggt
     2521 aggattagga tacacactca acaagggctt acctgaccaa tccacattca ccacttttga
     2581 ataggcgaac gaaccatcgc gatcaacctg ccggaggcgg taataattgg ctc
//
LOCUS       DATIQF010000609         3015 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_9824, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000609 DATIQF010000000
VERSION     DATIQF010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3015
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9824"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..936
                     /locus_tag="VLL95_10340"
     CDS             <1..936
                     /locus_tag="VLL95_10340"
                     /inference="COORDINATES: protein motif:HMM:NF012566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39301.1"
                     /translation="LGIQTPKRVDYLRVIIMELARISDHLICNSIVGVDTGAFTGFLY
                     VMQYRELIYEIYEEVCGSRLTTNIGRIGGFERNFNDIAFQKLEKFLKEYPAVLKEFEN
                     LFNRNRIFMERTQGGGAISAERALAYSFTGPNLRAAGVDYDVRVAKPYCSYEDFEFEI
                     PVGTTGDNYDRFMVRNGEMWQSLRIIEQAYRKVQEFKGAEDEVYHADVPEYYLPEKKD
                     VYTKMEALIWHFKIIMGEIDIPKGEVYHAVEGANGELGYYLISDGGRTPYRLYFRRPC
                     FIYYQAYPELVKGGMLSDAIVTMSSLNLIAGELDA"
     gene            992..1489
                     /locus_tag="VLL95_10345"
     CDS             992..1489
                     /locus_tag="VLL95_10345"
                     /inference="COORDINATES: protein motif:HMM:NF013426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase subunit E"
                     /protein_id="HSR39302.1"
                     /translation="MVQFSDEKMAKVKEIIGRYPEGKQKSALMPILHLAQEEWGWLSV
                     ETMDYVAGLLSLEPIEVYEVATFYTMYNLKPVGKHVFEVCHTGPCMLRGSDDIIAYIK
                     EKLGIGVGETTADGLFTLKTAECLGACGYAPMMQHGKYYREHLTKEKIDQIIEECRKQ
                     ASALN"
     gene            1550..2014
                     /locus_tag="VLL95_10350"
     CDS             1550..2014
                     /locus_tag="VLL95_10350"
                     /inference="COORDINATES: protein motif:HMM:NF016087.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein NlpE"
                     /protein_id="HSR39303.1"
                     /translation="MSCQNQAAGNAEAEAVPDSAITVITPTDTSTVMGTTDTSAGQSS
                     IVSDAPLTNFTGVYTGVLPCADCEGIETQLTLNDSKTYSISRKYLGKDDDRPFVSNGR
                     WEWMSNNAMKLNDPSGPPTLIYVMEGKVLMLDRSGNRIMGDMADKYYLYKAK"
     gene            2043..>3015
                     /locus_tag="VLL95_10355"
     CDS             2043..>3015
                     /locus_tag="VLL95_10355"
                     /inference="COORDINATES: protein motif:HMM:NF013662.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HSR39304.1"
                     /translation="MGRKLLLEKAHVEGIRFYDVYRREGGYRSVEKALKSMTPDEVTE
                     EVKKSGLRGRGGAGFPTGMKWSFLAKPEGVARYLVVNADESEPGTFKDRYLMEFIPHL
                     LVEGIITSSYALGANTAYIYIRGEYAWIPEILEQAIAEAKNNGWLGKNILGTGYNLEV
                     YVQRGAGAYICGEETALIESLEGKRGNPRIKPPFPAVKGLYDCPTVVNNVETICAVVP
                     IINDGGDEYAKIGVGRSTGTKLMSACGNIRKPGVYEIDMIISVEEFIFSDEYCGGMAN
                     GKRLKACIPGGYSVPILPANLLLKTAKGETRYMHYESLSDGGFATGSM"
BASE COUNT          800 a          692 c          817 g          706 t
ORIGIN      
        1 ctgggcattc aaactcccaa gcgggttgac tacctgcggg tcatcatcat ggaactggcc
       61 cgtatttctg accacctcat ctgcaattcc attgtaggcg tggacaccgg tgcatttaca
      121 ggcttcctgt acgtgatgca ataccgcgaa ctgatctatg agatctatga agaagtttgc
      181 ggcagccgtc ttaccaccaa cattggccgt atcggtggct ttgaacgcaa tttcaatgac
      241 atcgccttcc agaagctgga gaagttcttg aaagaatatc ccgcggtact gaaggagttt
      301 gaaaacctct tcaaccgcaa ccgcattttc atggagcgta cacagggtgg tggcgccatc
      361 agtgccgaaa gagcgctggc ttacagcttt accgggccca acctgcgtgc tgccggtgta
      421 gattatgatg tgcgtgtagc caagccttac tgcagctacg aagattttga atttgagatt
      481 ccggtaggca ccaccggcga caactatgat cgcttcatgg tgcgcaatgg tgaaatgtgg
      541 cagagcctcc gcatcattga gcaggcatac cggaaagtgc aggaattcaa aggtgccgag
      601 gacgaagtat accatgccga tgtgcccgaa tattatttgc ctgagaaaaa ggatgtgtac
      661 accaaaatgg aagcgctgat ctggcacttc aagatcatca tgggtgaaat tgacattccc
      721 aagggtgaag tgtatcatgc tgtggaaggg gccaatggtg aactcggtta ttatctcatt
      781 agcgatggtg gccgcacacc gtatcgtttg tatttccgcc ggccgtgctt catttattac
      841 caggcctacc cggaactggt aaaaggtggc atgctgagcg atgcgatcgt aaccatgtcc
      901 tcactcaacc tgattgccgg agagttggac gcataaaagg ggatggcctt tatcaaccat
      961 tcaatattgt agaattcgat ttaactgata tatggtacag ttttcagatg aaaaaatggc
     1021 gaaggtgaag gagatcatcg gtcgctatcc ggagggaaaa cagaaaagcg cactgatgcc
     1081 catcctgcat ctggcccagg aagaatgggg ctggctgagt gtggaaacga tggactatgt
     1141 ggctggcctg ctcagcctgg agccgataga agtgtatgag gttgccacct tctacaccat
     1201 gtacaatctg aaacctgtgg gcaagcatgt ttttgaagta tgccataccg gcccatgcat
     1261 gctccgtggc agcgatgaca tcattgctta catcaaggaa aagctgggaa ttggcgtggg
     1321 cgaaaccact gctgatggat tgtttacgct caagaccgct gaatgcttgg gtgcttgtgg
     1381 ctatgcaccc atgatgcagc atggcaagta ttaccgtgag cacctgacca aagaaaaaat
     1441 agaccagatc atcgaagaat gtcgcaaaca agcatctgcg ttgaactaat gaattgtatt
     1501 catgggtaaa attgttttga taggagtgat ggttgtaatg gcggggctga tgtcctgcca
     1561 gaatcaggct gccggaaatg cggaagcgga agcggttccg gattctgcca ttactgtgat
     1621 tacacccacc gacacttcaa ctgtgatggg tacaactgac acaagtgccg gtcaatcttc
     1681 cattgtttct gatgcccccc tcaccaactt caccggcgtt tataccggcg tgctgccctg
     1741 tgcagattgt gaaggcatcg aaacacaact aaccctgaat gacagcaaga cttattccat
     1801 ttccaggaaa taccttggca aagacgatga ccggcctttt gtatccaatg gtcgttggga
     1861 atggatgagc aacaatgcca tgaaactgaa tgatccttcc ggaccaccta cattgattta
     1921 tgtgatggag ggaaaagtgc tgatgcttga cagaagcggc aacaggatca tgggtgatat
     1981 ggcagacaag tattatttgt acaaagcaaa gtagaaaaac caggcatagg gaaaccaaac
     2041 gtatgggacg aaaactatta ctcgaaaagg cacacgtgga aggcattcgc ttctatgatg
     2101 tttatcgccg cgaaggagga tatcgcagtg tggaaaaagc actgaagtcg atgactccgg
     2161 atgaggtaac ggaggaagta aagaagagtg gattgcgagg ccgcggtggt gcaggctttc
     2221 ctaccggcat gaaatggagc tttctggcca agccggaagg tgtggctcgt tacctggtgg
     2281 tgaatgccga tgaatcagaa cccggaactt tcaaggacag gtacctcatg gagttcattc
     2341 cgcacctgtt ggtggaaggc atcatcactt catcgtatgc gctgggtgct aacactgcct
     2401 atatatacat ccgcggcgag tatgcctgga tccctgaaat actggagcag gccattgccg
     2461 aagccaaaaa caacggatgg ctgggcaaga acatcctggg taccggctac aacctggaag
     2521 tatatgtgca gcgtggagcc ggcgcttata tctgtggtga agaaacagcc ctgatcgaaa
     2581 gcctggaagg caagcgtggc aatccccgca tcaagcctcc gttccctgct gtgaagggtt
     2641 tgtacgattg cccgacagtg gtaaacaacg tggagaccat ttgtgctgtc gttcctatca
     2701 tcaacgatgg tggtgatgaa tatgccaaga ttggtgtagg ccgctctacc ggcaccaaac
     2761 tgatgagtgc ctgtggtaac atccgcaagc ccggtgtgta tgaaattgac atgatcatca
     2821 gcgtggaaga attcattttc agcgatgaat actgcggcgg catggctaat ggcaagcgcc
     2881 tcaaggcttg tatccccggc ggttactctg tacccattct gccggcaaac ctgctgctga
     2941 aaactgccaa aggagaaacc cgctacatgc actacgaaag cctgagcgat ggtggttttg
     3001 ctaccggcag tatga
//
LOCUS       DATIQF010000610         3303 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_70536, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000610 DATIQF010000000
VERSION     DATIQF010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3303
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70536"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..752)
                     /locus_tag="VLL95_10360"
     CDS             complement(<1..752)
                     /locus_tag="VLL95_10360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39305.1"
                     /translation="MPFRHLLLMLLLVSASILQSVSQSIDDYLSAPFPTSLVASPDGK
                     AIAWVFNKKGERNIYYAQAPDYKQVPLTAYKGDEGVEISQLAFTPDGKHIVYVRGNGS
                     NGQGEPANPAQLQTTTERKIFRVAVAGAESVLIARGSAPLVSPDGRHLVYLVAGKAWM
                     TSLLDTSMKPAQLFMARGGVGQMQWSPDGKWLAFVSSRGDHSFVGLFDVATKEVKFAE
                     TSLDFDGYPAWSPDSKRLAYLRVPNINNLLPFT"
     gene            1093..2361
                     /locus_tag="VLL95_10365"
     CDS             1093..2361
                     /locus_tag="VLL95_10365"
                     /inference="COORDINATES: protein motif:HMM:NF019285.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside transporter C-terminal
                     domain-containing protein"
                     /protein_id="HSR39306.1"
                     /translation="MGRFHGIIGIAMILLIAYLFSNNKKRINPRVVISGILLQVTIGI
                     LVLKVDFITAFFQKLGHGMQKIEEFAKAGANFVYGGIATMGFDGQPANYAAPGMFVFA
                     FNVVATIILVCVLVAILYHLKVMQRLVSVIAKGMNWVMRVSGAEALSNVASAFVGQVE
                     AQVMIRPYLAGMTRSELLASMSGSLACIAGGILVVYANMGAKAGLDLAPKLITASLMA
                     APGALVIAKIVYPETEESQTMGKVKLEVKSQYSNLIDAISHGASDGMKIGVNVIAMLI
                     GFIALIAFVDYLLLKGGHMFNPDFDLSLNYIFGKLFTPFAWGMGVPTQDVANAATLLG
                     QKLTVNEFVAFNNLTTKAVPLVTEKGLLIVSIAICGFANFSSVGMQIGGIGELAPTRR
                     ADLAQLGMRALLCGTLASYLSASIAGIIIG"
     gene            2387..2902
                     /locus_tag="VLL95_10370"
     CDS             2387..2902
                     /locus_tag="VLL95_10370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39307.1"
                     /translation="MDQTSTTVFVKPKRTTFVTVLCILTFLGSAYGIFAGLLAYSKGP
                     QISRANKEQRAKQESKPGTRKESEFDKKMDSEIAMFMDAEKIKQNAVASILTNAITFI
                     GAFLMFRMNSKGFWVYVLGTVGGVIAPLVIFGHNSLANIFAYGSGFVGLIFIVMYAFN
                     LRDMKPQPVYD"
     gene            complement(2986..>3303)
                     /locus_tag="VLL95_10375"
     CDS             complement(2986..>3303)
                     /locus_tag="VLL95_10375"
                     /inference="COORDINATES: protein motif:HMM:NF014799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HSR39308.1"
                     /translation="LEKEGISAEVIDLRTIRPLDWKTMVESVKKTNRMVIVEEQWPMC
                     SVSSEIAYRIQKEAFDYLDAPVLRITSADAPMHYAPNLAALAIPDVARTVKLVKEAMY
                     IKK"
BASE COUNT          821 a          844 c          789 g          849 t
ORIGIN      
        1 gtgaagggaa gcaggttgtt gatattgggc actcgcaggt aggccagcct tttgctatca
       61 gggctccagg caggatatcc atcaaaatcg aggctggttt ctgcaaactt tacctccttg
      121 gtcgccacat caaaaagccc cacaaaactg tggtcgcctc tgctgctcac aaatgccagc
      181 catttgccat cggggctcca ttgcatctgc ccaactccgc cccttgccat gaacagttgc
      241 gccggtttca tgctggtatc cagcaaactc gtcatccatg cctttccagc aaccaggtat
      301 accaaatgcc tgccatcagg gcttaccaac ggcgcactgc cacgggcaat caaaacactt
      361 tctgcgccag ccactgccac cctgaaaatt tttcgctcag tagtggtttg cagctgtgcc
      421 ggattggctg gttctccctg tccattcgaa ccattacccc tcacgtaaac aatatgcttt
      481 ccatccgggg tgaatgccag ttgggaaatt tcaacgccct catcaccctt gtaagcagtg
      541 agtggcacct gcttgtaatc gggtgcctgg gcataataaa tatttcgttc tcctttttta
      601 ttaaacaccc aggcgattgc cttcccatcg ggagaagcca ccaggctggt gggaaatggc
      661 gccgacagat aatcgtcgat cgactgagag actgactgca gaatactggc agacaccagt
      721 aaaagcatca agagcaaatg gcggaaaggc atatgaatcg tttgaatgtg acaagttaat
      781 tcctttgaga atatgcccac aagaaaacag cacctgcttt tttgcagatg ctgtttctaa
      841 tagccgggaa aaatctatcc aattaatcct gcaacgaagt agtcactttg ggtgcttctt
      901 tcgtccatac gcttacatcc agtttgcgtg gagtgggata cacttcgtcc agtgtgttgc
      961 catcatacag gcgaccgttc ttttacataa gcggaaggaa ctaatgcaaa aagggattca
     1021 ttttctgagg tgcaaaccac ttaataccta ttttcggctg tcaacgattt tgtattaaaa
     1081 caatacgcta acatgggtcg ctttcatgga ataattggca ttgcaatgat tttgttgatt
     1141 gcctatttgt tttccaacaa caaaaagaga atcaaccccc gggtagttat cagtggcatt
     1201 ttgctgcaag tgaccatagg tattttggtg ctcaaggttg atttcatcac ggcctttttt
     1261 caaaagctgg gccacggcat gcaaaagatc gaagagtttg ccaaggccgg cgccaacttt
     1321 gtttacgggg gcattgccac catgggtttt gatggacagc ccgctaacta tgcggccccc
     1381 ggcatgtttg tatttgcctt caacgtagta gccaccatca tccttgtgtg cgttttggta
     1441 gccattttgt atcacctgaa agtaatgcag cgactggtgt ctgtcattgc caaaggcatg
     1501 aactgggtaa tgcgggtgag cggcgctgaa gcgctcagca atgtggccag tgcttttgta
     1561 ggacaggtgg aagcccaggt gatgatccgt ccctacctcg ccggcatgac acgcagcgaa
     1621 ctgctggcca gcatgagcgg cagcctggcc tgtattgccg gcggcatatt ggtggtgtat
     1681 gccaacatgg gtgccaaagc cggcctcgac ctcgccccca aactcattac tgccagtttg
     1741 atggctgcgc ccggcgcatt ggtaattgcc aagatcgtgt accctgaaac tgaagaaagc
     1801 caaaccatgg gcaaggtgaa gctggaagtg aaaagccaat acagcaacct tattgatgcc
     1861 atcagccatg gtgccagcga cggtatgaaa attggcgtga acgtgatcgc catgctcatc
     1921 ggctttattg cacttatcgc atttgtagac tacctgttgc tgaaaggtgg ccatatgttc
     1981 aaccccgatt tcgacctcag cctcaattac atctttggca agctgttcac cccctttgcc
     2041 tggggcatgg gcgtacccac ccaggatgta gccaacgcag ctacgctgtt ggggcaaaaa
     2101 ttgacggtga atgaatttgt ggccttcaac aatcttacca ccaaagccgt gcccctggta
     2161 actgaaaaag gtttactcat tgtaagtatt gccatttgcg gctttgccaa cttcagcagc
     2221 gttggcatgc aaataggcgg catcggcgaa ctggcgccta cccgccgtgc cgacctggcg
     2281 caactgggta tgcgggcatt gctttgcggc acccttgcct cctacctgtc tgcttctatt
     2341 gccgggatca tcataggtta atcatcacac ataaagactt tcgaaaatgg accaaacttc
     2401 aaccaccgtt tttgtgaaac ccaaacgcac cacattcgta acggtgttgt gcatcctcac
     2461 ttttttaggc agcgcctacg gcatattcgc cggcctgctg gcctacagca aagggcctca
     2521 gataagcagg gccaataaag agcaaagggc aaagcaggag tccaaacccg gcacacgtaa
     2581 agaatccgaa ttcgacaaaa agatggacag tgaaatcgcc atgttcatgg atgcggaaaa
     2641 aataaaacaa aacgcggttg ccagcattct taccaatgcc atcacattca tcggggcctt
     2701 tctcatgttc cggatgaaca gcaaaggctt ttgggtttat gttttgggca ccgtgggcgg
     2761 cgtgatagcc cccttggtca ttttcgggca caattcactt gccaacatct ttgcttatgg
     2821 cagcggattt gttggcctta tcttcatcgt aatgtatgcg ttcaatcttc gcgatatgaa
     2881 gccacaacca gtgtatgatt gaaagagatt gaccgcagta tataaaaaga aaatcctccg
     2941 ttttgcaacg gaggattttt ttatgcctga aaatatctgg tttaactact tcttgatata
     3001 catcgcttcc ttcaccagct tcacagtgcg ggctacatcg ggaatagcca gtgctgccag
     3061 gttgggagca tagtgcattg gcgcatcggc actggtaatg cgcaacaccg gcgcatccag
     3121 gtaatcgaaa gcttctttct gaatacgata agcgatttca gaagacactg aacacatggg
     3181 ccactgctct tctacaatca ccatgcggtt ggttttcttc acgctttcaa ccatcgtttt
     3241 ccaatccaga ggacggatgg tgcgcaggtc aatcacttcg gcgctgatgc cttctttttc
     3301 cag
//
LOCUS       DATIQF010000611         3285 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_100828,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000611 DATIQF010000000
VERSION     DATIQF010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3285
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100828"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            138..959
                     /locus_tag="VLL95_10380"
     CDS             138..959
                     /locus_tag="VLL95_10380"
                     /inference="COORDINATES: protein motif:HMM:NF014788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIR synthase-related protein"
                     /protein_id="HSR39309.1"
                     /translation="MIAVAEAARNIVCSGGEPLGVTNCLNFGNPYDPEVYWQFVNAIK
                     GMGDACRKFNTPVTGGNVSFYNQNPDGPVYPTPTIGMVGLLESVNEKMTLDFKQAGDV
                     IIMIGKSSNDINSSEYLHKMHGAEFSPAPQFDLEEEFHLQKVLADLIKNNLISSAHDV
                     SEGGLFVTLCESAFWNNLGFEINTNVSVRNDAFLFGEAQSRVVVSVKRDALATLEEAL
                     QSHGQHYEVIGEVTHGDIIVDAASWGNIDNWKDRYDNAIANLLKGHESEHALSAL"
     gene            complement(1013..1882)
                     /locus_tag="VLL95_10385"
     CDS             complement(1013..1882)
                     /locus_tag="VLL95_10385"
                     /inference="COORDINATES: protein motif:HMM:NF012604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39310.1"
                     /translation="MKRTISMLITFTLAATTLGRAQNVGIGTNTPAYKLDVNGRMRLR
                     SANGQTAGLWLDGPSLATRGFIGAIDDNHVGIWGSGSSWNFSMNVVNGNTGIGVAAPT
                     ATLDIDGTMKLRGYSPKKGAVLSATDDQGNVTWARPVAFRVSGLVNNENQLIANGSQP
                     TWRKVNFNNVVNYNMGLHYLPNSSEFMVPENGIYHFDLGLHWTHSYQAFTRIVVFRNG
                     SYLTIAEASLSEDNSTQNNSFYEIRLSSDFQLLANDLVYIAVMVWENDNEGGILYNQA
                     STTYFGGHLVARQ"
     gene            2108..3217
                     /locus_tag="VLL95_10390"
     CDS             2108..3217
                     /locus_tag="VLL95_10390"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HSR39311.1"
                     /translation="MDKREIILVTGAAGFIGSVMAGYLNSLGYNNLILVDDFGREDKR
                     KNWEGKNYLEIVERYNLEDWLKAHNPSIDCVIHLGARTDTTEFNYEIHEELNVQYSQM
                     LWKYCTSNRVPLIYASSAATYGGGELGYDDNHELPFLLKPLNPYGVSKNEFDKWAIEQ
                     AEGLREDIQDEDGWVRSDGSHTPNPCGAPPFWAGLKFFNVYGPNEYHKGRMASVIWHS
                     FNQIKKDGVVKLFRSHRPDFEDGQQLRDFIYVKDVVKVIAWMLEKTTDHRQQTTGEKP
                     YGGRSALVSGLYNLGTGKARSFYDLAAATFRGLDLEPNIVFIDMPEDIRDKYQYFTEA
                     NMQKLKDAGYAEAFTSLESGVDDYVRNYLKQMRYC"
BASE COUNT          897 a          738 c          818 g          832 t
ORIGIN      
        1 gtttcgctat atgtgacgcc ctggaccata ttcttgattc cgagatcatt cttgataatt
       61 tccagtggta tgaatcaaac aaaaaacccg gcacagacga caaataatca taagaactac
      121 ttaaatacaa aggagcgatg attgccgtgg ccgaagctgc ccgtaacatc gtgtgcagtg
      181 gtggtgagcc actgggtgtg accaactgtc tcaactttgg caacccctac gatcctgaag
      241 tgtactggca gtttgtaaac gcaatcaaag gcatgggcga tgcctgccgc aagttcaata
      301 caccggtaac gggtggcaac gtgagctttt acaaccaaaa ccccgatggc ccggtatatc
      361 ctacacccac cattggtatg gtaggtttgc tggaaagtgt gaatgaaaag atgacgcttg
      421 actttaagca ggcaggggat gtgattatca tgatcggcaa aagcagcaac gatatcaact
      481 caagcgaata cctgcacaaa atgcatggcg cggaattcag ccccgccccg cagtttgatt
      541 tggaagaaga attccacctg cagaaagtgt tggccgatct tattaagaac aaccttatca
      601 gcagtgcgca tgatgtgagt gaaggtggtt tgttcgttac actttgcgaa agtgcattct
      661 ggaataacct cggttttgaa atcaatacca atgtttccgt tcgcaacgat gctttcctgt
      721 ttggcgaagc gcaaagcagg gtagtggttt cagtaaaacg tgatgccctc gccaccctgg
      781 aagaagcctt gcagagccat ggccagcatt acgaagtgat tggtgaggta acccatggtg
      841 acattattgt tgatgctgcc agttggggca acattgataa ctggaaagac aggtacgaca
      901 atgccattgc caacctgctg aaggggcatg agagtgagca tgcattgagt gcgttgtagt
      961 gtgccaaaaa cataaccaag gccgggcaaa gaacaaatac tgcccggctt tttcattgcc
     1021 tcgctaccag gtgccctcca aaataggtag ttgaagcttg attgtatagt attccacctt
     1081 cgttgtcatt ttcccacacc attacggcta tataaaccag gtcattcgct agtagttgga
     1141 agtcactgga caggcgtatt tcataaaagc tgttgttctg tgtgctgttg tcttcactca
     1201 aactggcctc ggctatggtg agataagatc cgtttcgaaa gaccacaatt ctggtaaacg
     1261 cttggtaact gtgtgtccaa tgcagcccca ggtcgaaatg ataaatccca ttttcaggta
     1321 ccatgaattc agacgagttg ggcaagtaat gcaggcccat gttgtaattc actacgttgt
     1381 tgaaattcac ctttctccag gtgggctgac tgccgttggc aatgagttgg ttttcattat
     1441 taacaagccc gcttacccta aaagctacgg gtcttgccca tgtaacattg ccctggtcat
     1501 cggtggcgga gagcaccgca ccctttttag gtgaatatcc tctgagtttc atggtgccat
     1561 caatatccaa cgtggctgtg ggggcagcta caccaatacc tgtgttccca tttaccacat
     1621 tcattgaaaa attccaactg ctgcccgatc cccaaatgcc aacatgatta tcgtctattg
     1681 cgccaataaa accacgtgtg gccaggctgg gaccatcgag ccaaaggccc gcggtttgcc
     1741 cgttggctga tcgcaaacgc attcttccat ttacatccaa tttgtatgcg ggggtattgg
     1801 ttcctatgcc tacattttgg gcccggccca gcgtagtggc tgcaagtgta aaagtaataa
     1861 gcattgaaat cgtccttttc atggtagcag ttttgtaacc gtgaaattga aatgactggt
     1921 ccatccggca tattattttc aaccgaatcg tggggattgg ataatgagtc gtgataaatg
     1981 gcgattgatc agtttggacc aatagggcaa aaggaatcct tcaacttctt cataattgat
     2041 ttgacccgat tgaactgtcg cctttcattt ggtgccaaaa ccagaacttt gaacttcaag
     2101 ttgaaaaatg gataaaagag aaattattct agtaaccggc gctgctggct tcattggcag
     2161 tgtcatggcc ggatacctca atagcctggg atacaacaac ctcattcttg tggatgactt
     2221 tggccgtgaa gacaaacgta aaaactggga aggcaagaac tacctggaga tagtggagcg
     2281 gtataacctc gaggattggt taaaagcaca caacccatcc atagattgtg tgattcacct
     2341 cggcgccaga acggatacca cagagttcaa ttatgaaatt cacgaagagc tgaatgtgca
     2401 atacagccag atgctttgga aatactgcac gtccaatcgt gttccgctga tatacgcgtc
     2461 cagtgccgct acttatgggg gcggcgagtt gggctacgat gataaccatg aactgccctt
     2521 cctgctgaag ccattaaacc cttacggcgt cagcaaaaat gaatttgaca aatgggccat
     2581 tgaacaggca gagggtttgc gggaagacat acaggacgaa gatggctggg tgagaagcga
     2641 tggatcgcat acgcccaatc cttgcggagc gccaccgttt tgggccggtc tcaaattctt
     2701 caacgtgtat ggccctaatg aataccacaa aggccgcatg gcatcagtga tctggcattc
     2761 gttcaaccag atcaagaagg atggcgtggt gaaactcttc cgcagccatc gccccgattt
     2821 tgaagatggc cagcaactgc gtgactttat ttatgtaaaa gatgtggtga aggtgatagc
     2881 gtggatgttg gagaagacca cagaccacag acaacagaca acaggagaaa agccttacgg
     2941 tggtcggtcg gcgttggtca gtggtcttta caacctgggt accggtaagg cccgcagctt
     3001 ctatgatttg gcagcagcca ccttcagggg attggacctg gagccgaaca tcgtattcat
     3061 cgatatgccc gaggacatcc gtgataaata ccagtatttt actgaggcca atatgcagaa
     3121 gctgaaggat gcgggatacg cggaagcgtt tacatcattg gaatcggggg tagacgatta
     3181 tgtaaggaat tacctgaagc aaatgagata ttgctgatca gaaaagtacc agtttttttg
     3241 agctgatgac cttgccattt tctcccaatg cctggatgat gtaaa
//
LOCUS       DATIQF010000612         3137 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_283284,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000612 DATIQF010000000
VERSION     DATIQF010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3137
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283284"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(143..2965)
                     /locus_tag="VLL95_10395"
     CDS             complement(143..2965)
                     /locus_tag="VLL95_10395"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HSR39312.1"
                     /translation="MSLHKFLLAAACSCMLCINAHSQTVLLPFQSTWKFLDNGSNQGT
                     TWVQPGFADAAWSSGPGQLGYGDGDEATVVSYGADANNKYITTYFRTAVSIANTALYS
                     GYTLSVRRDDGIVVYVNGTEVYRNNMPTGTIAYNTLATAAASDDGGTVQTATLAASAF
                     VNGSNTIAVEVHQNAGTSSDLSFDLQLQGTLAPVAPAVLSDYASTWKYLDNGSNQGTA
                     WRSLSFSDATWKTGTAPLGYGNAGVATTVSFGTNSRKKYITTYFRRMISVTDPSLYQT
                     LDLAVKRDDGAVVYINGTEVFRTNMPTGTISNTTRASANAADEGSVAQTISLSATALA
                     SGNNVIAVEIHQSGPTSSDIFFDLQLKASAAAPAATITRGPYLQMVNQTAATLRWRTD
                     IATNSRIELGTSHGTYTLSASDAAVTTEHIVRISGLQPETKYYYRFGSSTQMLQAGTD
                     NYLITAPANNSSKKVTVAVFGDCGRNDNGYQSQTLTAYRNYTGANPAELMLLLGDNAY
                     TNGTDAEYQSQFFNVYQGNILKNHALFHAQGNHDYYSTSQSSRDGAYYQNFSMPTAAE
                     CGGLASGTEAWYSYNWGNVHFLSLDSYGTESPNNTRLYDTTGPQVSWIKNDLAANTKK
                     WTVVYWHHPPFTMGSHNSDTETELVNIRQNFIRILERYGVDLILCGHSHDYERSYLLK
                     DYFGNEASFNLATHAVTSSSGQYNGTANSCAYTTANGQVNHGTVYVVSGSAGASGSTQ
                     AGYPHNAMPWSLNDGGMFYFEVDDNRLDAKFIRRTGVVWDQFTIMKGVNASNTITINA
                     GEQTTLTASWPGSYQWSTGATSRSITVSPTITTTYSVTDAQGCLQDSYTVQVMQALST
                     QTKTGAITKGIKVYPVPAAGGQQVFVETAAPARVIIADSKGVVLQTLQVNGRQTIDTR
                     NLPSGLYLVQTTIGGKTYSSRMIVQR"
BASE COUNT          634 a          773 c          889 g          841 t
ORIGIN      
        1 agaaactgat ggattacctg gccacgcggt agttttcatg tgtcctttcc agtgcatcca
       61 tgttctgcga aaaaaaagag gccccaccct gattgtttat ggatcgggtg gggccaataa
      121 ttctgtaagt gttgttatcg ccctatcgct gcacgatcat tcggctggaa taggttttgc
      181 caccgatggt tgtttgcacc aggtacaagc ccgatggcag gttccgggtg tcgatggttt
      241 gtctgccgtt cacctgcagt gtctgtagca ccacgccttt gctgtcggca atgatgaccc
      301 tggcaggcgc tgctgtttcc acgaacacct gttgaccacc cgctgcgggc actgggtaca
      361 ctttaatgcc tttggtgatg gcaccggttt tggtttgagt gctcaatgcc tgcattacct
      421 gtacggtata gctgtcctgc aggcagccct gtgcatcggt cacgctgtag gtagtggtga
      481 tggtgggtga tacagtgatg cttcgtgaag tggcgccagt agaccattgg tagctgccgg
      541 gccagctggc agtcagcgta gtttgttcgc cagcgtttat ggtaatagta ttgctggcat
      601 tcacgccttt cataatggtg aactgatccc aaaccacacc agtgcggcga atgaatttgg
      661 catcgaggcg gttgtcgtcc acttcaaaat aaaacatgcc tccatcgttg agcgaccacg
      721 gcatggcgtt gtgcgggtac ccggcctgtg tgctgccact ggcccctgca gatcccgaca
      781 ccacgtacac ggtaccatgg ttcacctggc cgttggcagt ggtgtatgca caggagttgg
      841 cggtgccatt gtactgtccg ctggagctgg ttactgcatg tgtggccagg ttgaagctgg
      901 cttcattgcc gaagtaatct ttgagcaaat agctgcgctc ataatcatga ctgtggccgc
      961 acaaaatgag atcgacgcca tatcgttcca ggatgcggat gaagttttgc ctgatgttca
     1021 ccagttccgt ttctgtatcg ctgttgtggc tgcccatggt aaaaggtgga tggtgccaat
     1081 acacgacggt ccattttttg gtattggcgg ccaggtcatt ttttatccag gatacctgtg
     1141 gacctgtggt atcatacagg cgggtgttgt tgggactttc agttccgtaa gagtcgaggc
     1201 tcaggaaatg cacgttgccc cagttgtagc tgtaccaggc ttcggtaccc gatgccagtc
     1261 cgccacattc tgccgcggtg ggcatgctga aattttgata atacgcacca tctctgctgc
     1321 tttggctggt gctgtaatag tcgtggttgc cctgggcgtg aaacagggca tgatttttca
     1381 aaatgttgcc ctggtagaca ttgaagaatt gcgactggta ttcagcatcg gtgccattgg
     1441 tataagcatt gtcacccagc aatagcatga gctctgcggg gttggcgccg gtatagttgc
     1501 gataggccgt cagcgtttgc gattggtagc cattatcgtt gcgtccgcag tcaccaaaca
     1561 cagccaccgt tactttcttg gatgagttgt tggccggcgc tgtgatgaga tagttatcag
     1621 tgcccgcttg cagcatttgt gtgctgctgc caaagcgata atagtatttg gtctcgggtt
     1681 gcaagccgct gatgcgtacg atgtgttctg tggttactgc tgcatcactg gcactcagcg
     1741 tataagtgcc atggctggtg cccagttcaa tgcgtgagtt ggtggctata tcagtacgcc
     1801 agcgcagcgt agccgccgtt tggtttacca tttgcaaata cggcccgcgg gtaatggtag
     1861 cagccggggc agcagcgctt gccttgagtt gcagatcaaa aaagatatcg ctggaagtgg
     1921 gtcccgattg gtgtatttca acggcgatca cattgttgcc ggaagccagt gctgttgccg
     1981 acaggctaat ggtttgtgcc acgctgccct cgtcggctgc attggcgctg gcccttgtgg
     2041 tattactgat ggtgcccgtt ggcatgttgg tgcgaaacac ctcggtaccg ttgatataca
     2101 ccacggcgcc atcatcacgc ttcactgcaa ggtccagtgt ttgataaagc gaaggatcgg
     2161 ttacgctgat catccgcctg aaataagtgg tgatgtattt ctttcggcta ttggttccaa
     2221 aactcaccgt ggtggccacg ccggcattgc catagcccag tggggcggtg ccggttttcc
     2281 aggtggcatc gctgaatgac aggctgcgcc aggctgtgcc ctggttactg ccattatcga
     2341 gatatttcca ggtgctggca tagtcactga gcacagccgg ggccactggt gccagcgtgc
     2401 cctgcagttg caggtcaaag ctcaggtcgc tgctggtgcc ggcgttttga tgcacttcca
     2461 ctgcaatggt attgctgcca ttcacaaaag cactggccgc cagtgttgcg gtttgaacgg
     2521 tgccaccatc atcgctggca gcagcagtag ccaatgtgtt gtaggcaatg gtgcctgtgg
     2581 gcatgttgtt tcggtacact tctgttccgt tcacgtacac cacaatgcca tcgtcgcggc
     2641 gcacactaag cgtatagccg ctgtacaaag cagtattggc gatgctgacc gccgtgcgga
     2701 aataggtggt gatgtatttg ttgttggcat cagctccata actcaccacc gtggcctcgt
     2761 cgccatcgcc atagcccagc tggcccggcc cgctggacca tgcagcatcg gcaaaaccgg
     2821 gctgtaccca ggtagtgccc tggttggagc cattgtcaag gaatttccag gtagattgaa
     2881 aagggagtaa aaccgtctgg gaatgagcat taatgcaaag catgcaactg catgctgccg
     2941 caagcaggaa tttgtgtagt gacatgggag agcaagttgg ttgtaattaa caagttaaac
     3001 atcgatcctg ataattcata atccatgcca aactatctgc ctgctaatcg caaatctttc
     3061 ccaggggttt tcccttttgc cattgcgaat tcaactcgtt gaattctttt tcatctgctg
     3121 agctgaattg tttgttc
//
LOCUS       DATIQF010000613         4316 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_70574, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000613 DATIQF010000000
VERSION     DATIQF010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4316
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70574"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..389
                     /locus_tag="VLL95_10400"
     CDS             <1..389
                     /locus_tag="VLL95_10400"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HSR39313.1"
                     /translation="FITPGASVIDALHIMEEKNIGSVVVMENSQYKGIVTERDYSRKV
                     ILKGKNSSDTPVSEIMTNDLPAVTPDDSIDKCMELMSNKHIRYLPVFDAGEQLAGIIS
                     MSDVVGAKLIRQQETISHLEKYISGS"
     gene            complement(424..987)
                     /gene="atpH"
                     /locus_tag="VLL95_10405"
     CDS             complement(424..987)
                     /gene="atpH"
                     /locus_tag="VLL95_10405"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit delta"
                     /protein_id="HSR39314.1"
                     /translation="MVNPRLAARYAKSLIDLAIEQNQLEQVKQEVDFILHAFKLSPEF
                     KTLLRSPVIKGDKKMAILREVGKGRFNPLMAGFMRLLILKGRENVLPEIFETFNAQYN
                     EHKGIHEVTITTAQPVSDELKANLLEKIKAETKLGQVELKTKVKEELIGGFVLEYNNN
                     LVDASISRMLKDVRRDFVSNEYTYRIR"
     gene            complement(1041..1529)
                     /gene="atpF"
                     /locus_tag="VLL95_10410"
     CDS             complement(1041..1529)
                     /gene="atpF"
                     /locus_tag="VLL95_10410"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HSR39315.1"
                     /translation="MLDVGLGLFVWNLIAFLVVLLLLRKFAWKPILNSLNERETKIAD
                     SIATADRVKAEMAQLQSENEALMLKAREERAALLKEAKETGDRLINDAKEKAKAEANK
                     IVAEAQLAINNQKKAALTEVKNEVGNLVIDVAEKVLRRELANKAEQEAYISQLSQQTP
                     LN"
     gene            complement(1632..1880)
                     /gene="atpE"
                     /locus_tag="VLL95_10415"
     CDS             complement(1632..1880)
                     /gene="atpE"
                     /locus_tag="VLL95_10415"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F0 subunit C"
                     /protein_id="HSR39316.1"
                     /translation="MQLMNVLLDVSMSHLGGAIGAGLAAIGAGIGIGQIGKGATESIA
                     RQPEAANDIRGAMILTAAFVEGVALLAAVAGLLAVFKA"
     gene            complement(1933..3045)
                     /gene="atpB"
                     /locus_tag="VLL95_10420"
     CDS             complement(1933..3045)
                     /gene="atpB"
                     /locus_tag="VLL95_10420"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HSR39317.1"
                     /translation="MKSLLVAVFSIFSVGLALAEEGQHEAAGHKEQLNPGKVIIEHVT
                     DSHDFHFMDLGEKAISIPLPVILYSEGKWHFFSSGKFHHGHEAHEGFFLVNDHYIEKM
                     KEEGADVSSLKNQQIIAVDAEGKPRSEVKVYDFSMTKNVVQMLIASILLIVIMSSIAK
                     KYAKNGPNKAPSGFQNAVEPVITFVRDEVAKPNLGKKYQRYLPLLLTIFFFILINNLF
                     GLIPGSANVTGNLALTAVLAIISFLVILFSTNKHFWGHIFWFPGVPVPVKFIMMPVEL
                     MGIVTKPFALMIRLFANMIAGHVIILSFIILIFIFGAMNAALGYGTSPVFIALAVFIY
                     CIEILVAFIQAFIFANLTAVFIGQSFEHGDHSDGHH"
     gene            complement(3194..>4316)
                     /locus_tag="VLL95_10425"
     CDS             complement(3194..>4316)
                     /locus_tag="VLL95_10425"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR39318.1"
                     /translation="FTAEDREYRKFQQINREHRNANIKAIFAYSVFFPVVEVVLALSL
                     GLLVWWVADRRIEAGKLIAFILFLNQIFRPLRVIADKFNVIQMGMVASERVFKVIDNN
                     DEMPAPAPDAYRPQQVDGRIAFREVSFAYNEPEWVLKILNFEVQKGETLAIVGSTGSG
                     KTTIISLLNRLYEVQEGSILVDNVDVKKWHPDALRGSIGVVLQDVFLFAGTVLENVTM
                     RNDGIPREKVMEVCRLIGLNDFIEQLPGGYDFNIMERGATLSAGQRQLLSFARCLLYD
                     PAILILDEATSNIDTESEQLIQKAIDKMIAGRTAIIIAHRLSTIRKAGKILVMDRGEA
                     KEMGSHEELLARGGYYARLHHMQFERKSAVTSAGSKQTA"
BASE COUNT         1082 a         1107 c         1036 g         1091 t
ORIGIN      
        1 tattcatcac gcctggtgct tctgtaatag atgctttgca cattatggag gagaagaata
       61 ttggaagcgt ggtagtgatg gaaaacagcc aatacaaagg cattgtgaca gaacgcgact
      121 actcccggaa agtgatcctc aaaggcaaga actcaagcga taccccggtt tccgaaataa
      181 tgaccaatga cctacctgcc gtaacgcccg atgacagtat tgataagtgt atggaactga
      241 tgagcaacaa gcatattcgc tatttgccgg tatttgatgc cggcgagcaa ctggcaggca
      301 tcatctccat gtcggatgtg gtgggcgcca agctcatcag gcaacaggaa accatttcgc
      361 accttgaaaa atacatttca ggcagttaac aaaaatcccg gctcatggcc gggatttttt
      421 cttttacctg attcggtaag tatactcgtt ggagacaaaa tctctccgaa cgtctttaag
      481 cattcggctg atagacgcat ctaccaggtt gttgttgtat tccaacacaa aaccgccgat
      541 cagttcttcc ttcacctttg ttttcagttc cacctgcccc agtttggttt ctgctttgat
      601 cttctccagc aggtttgctt tcaattcatc cgaaaccggc tgagcagtgg taatggtaac
      661 ttcatgaatg cccttgtgct cattgtactg ggcattgaat gtttcgaaga tctcgggcaa
      721 cacattctcg cggcctttca aaataagcag ccgcataaag ccagccatca aaggattgaa
      781 gcggcctttg cccacttcgc gaaggatggc catctttttg tcgcccttga taaccgggct
      841 gcgcaacagt gttttgaatt caggacttag cttaaaagca tgcagaatga aatccacttc
      901 ctgttttacc tgctccaatt ggttctgttc aatggcgagg tctatcaggc ttttggcgta
      961 gcgtgctgca agacgagggt taaccatgtt ggctcaattt cttattccgg aaatgcccgg
     1021 agggagtaaa tcaatatgat ttaattcagg ggtgtttgct ggctcagctg gctgatgtaa
     1081 gcttcctgtt cagccttgtt cgccaattca cgacgcagta ctttttcagc cacatcgatc
     1141 accaggttgc ccacttcgtt tttcacttct gtaagcgccg ccttcttctg attgttgatt
     1201 gccagctgtg cttcggccac tatcttgttg gcttcagcct tcgccttttc cttggcatca
     1261 ttaatgaggc gatcaccggt ttcctttgcc tctttcagca aggctgcacg ttcttcacgg
     1321 gccttcagca tcagcgcttc attttcgctt tgcagttgtg ccatttctgc ctttaccctg
     1381 tcggcagtag caatgctgtc ggcaattttt gtttcgcgtt cattgaggct gttgaggatg
     1441 ggtttccacg caaacttgcg cagcagcagc aacacaacca ggaaagcgat gaggttccag
     1501 acaaaaaggc ctaatcctac gtcgagcata tcaaaaaatt ttgagcgtta tttttctgag
     1561 tcaaaaagca aaaaaacaac tgcgcctttc gccctgtgct tggggcgcag ttgagatcgg
     1621 taacaatgct attaagcctt gaatacagcc agcagaccag ctacagcggc cagcagggca
     1681 acaccttcta cgaaggcggc agtcaggatc atagcaccgc ggatgtcgtt agcagcttca
     1741 ggctggcggg cgatgctttc agtagcgcct ttaccaatct gaccaatacc gataccagcg
     1801 ccaatagcgg ccaaaccagc accgatagca ccaccgaggt ggctcatgct aacatccaac
     1861 aaaacgttca tcagttgcat aatagatgat atttaaaatg aaaaaatcct tgtttgtttt
     1921 cctttcttca gcttagtggt gtccatcgct gtgatcgcca tgttcaaaag actgaccaat
     1981 gaatactgcg gtcagattgg cgaatatgaa agcctggata aaggccacca ggatctcaat
     2041 gcaatagata aacactgcca gggcaatgaa cacagggctg gttccgtagc ccagcgcagc
     2101 gttcatggct ccaaatatga agatgaggat aataaagctc agaatgataa cgtgaccggc
     2161 gatcatgttc gcaaaaagac gaatcatgag ggcgaaaggc ttggtcacaa tacccatcaa
     2221 ttccaccggc atcatgataa acttgacagg aacaggtacc ccgggaaacc agaatatgtg
     2281 gccccagaaa tgcttgttgg tgctgaaaag gatcacaagg aatgaaatga tggccaacac
     2341 agccgtcagg gcgaggttac ccgttacgtt ggccgagccg gggatcaggc cgaaaaggtt
     2401 gttgatgaga ataaaaaaga agatggttag cagcaaaggc aggtaacgct ggtatttctt
     2461 tcccaggttg ggcttggcta cttcatcgcg aacaaaagtg ataacaggct ccacggcatt
     2521 ttgaaaaccg gaaggcgcct tgttgggacc attcttcgca tatttcttgg caatgctgct
     2581 catgataaca ataagcagga tgctggctat cagcatttgt accacgttct tggtcatgct
     2641 gaagtcgtac accttaactt ccgaacgggg cttgccttct gcatctaccg caatgatctg
     2701 ctggttcttg aggctgctca cgtcagcgcc ttcttccttc atcttctcga tgtaatggtc
     2761 gtttaccagg aaaaagcctt cgtgagcttc atgaccatgg tgaaacttgc cactgctgaa
     2821 aaaatgccat ttgccttcgc tgtaaaggat aacgggcagc ggaatggaaa tggccttttc
     2881 gccgaggtcc ataaagtgga aatcgtgaga atcggtcacg tgttcaatga tcactttacc
     2941 cggattcaac tgctccttgt ggccggcagc ttcgtgttgc ccttcttcgg ccaaagccaa
     3001 acccactgaa aagatgctga aaaccgcaac cagtaaagat ttcatgaact tgctacccat
     3061 acctatggtc aaatttggcc gcaaatgtac gggtagcggg ccaaacatgc gtggcgaaaa
     3121 ccaaagaaaa atcgaatttt attcaggccg gccgggcatt gtgatgaaag cctcagacct
     3181 gctcatagca ggatcaggct gtttgttttg aaccggctga ggtcacagcg cttttgcgct
     3241 caaattgcat gtggtgcagc ctggcataat agcctccccg ggccagcaat tcctcatgtg
     3301 aacccatctc cttggcctct cccctgtcca tcaccagtat tttgccggcc ttgcggatgg
     3361 tactcaatcg gtgcgcaatg atgatggcgg tgcgcccggc aatcatctta tcgatggctt
     3421 tttggatgag ttgctcactt tccgtgtcga tattgctggt ggcttcatcc aggataagaa
     3481 tggccggatc gtaaaggagg caacgggcaa agctcagcaa ctggcgctgc ccggcgctaa
     3541 gggtggcccc ccgctccatg atgttgaaat cgtacccacc gggcaattgt tcaataaaat
     3601 cattcaaccc gatgaggcgg caaacttcca tcaccttttc gcggggaatg ccgtcgttgc
     3661 gcatggtcac attttccaac acggtgcccg caaacaggaa aacatcctgc agcaccacgc
     3721 caatgctgcc ccgcagcgca tcagggtgcc acttcttcac atccacattg tccaccagga
     3781 tgctgccctc ctgcacttca tacagcctgt tgagcaatga aatgatggtg gttttgccac
     3841 tgccggtgct gcccacaatg gccagcgttt cgcctttctg cacctcaaag ttcagtatct
     3901 tcaaaaccca ctcaggctcg ttataggcaa aactcacttc ccggaaagcg atccggccat
     3961 ccacctgctg cggccgatag gcatcgggag ccggggcggg catttcatcg ttattgtcaa
     4021 tcaccttgaa cacccgttcg ctggctacca tgcccatttg gatgacattg aatttatcgg
     4081 caataacccg cagtggcctg aaaatctggt tgagaaaaag aatgaaagcg atgagtttgc
     4141 ccgcctcaat cctgcggtcg gccacccacc ataccaacag gcccaggctc agcgccagta
     4201 ccacttccac caccgggaaa aagacagaat aggcaaaaat ggccttgata ttggcgttgc
     4261 ggtgctcccg gttgatctgc tggaatttcc ggtattcgcg gtcttcggcg gtaaag
//
LOCUS       DATIQF010000614         1761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_207691,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000614 DATIQF010000000
VERSION     DATIQF010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1761
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207691"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..627
                     /locus_tag="VLL95_10430"
     CDS             <1..627
                     /locus_tag="VLL95_10430"
                     /inference="COORDINATES: protein motif:HMM:NF014460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR39319.1"
                     /translation="IGSLPIVLIISVFLGMVMTVQTAYQLVSNLIPQSTIAVVVRDSM
                     LLELSPTVICVVLAGVVGSKIASELGNMRISEQIDALEIMGINTKTYLILPKIAAALI
                     TVPMLVSLSVIVSLWGGRFVGDVASIIDSATYDQGLLKDFNPYNVWVAIAKALTFSII
                     ISSVTAYFGYNVKGGALEIGRSSTLAVVVSCILILLADYVLTLLMLNP"
     gene            624..1421
                     /locus_tag="VLL95_10435"
     CDS             624..1421
                     /locus_tag="VLL95_10435"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSR39320.1"
                     /translation="MIIVDHIRKSFGDRTVLYDISASFYPGKCNLIIGTSGSGKTVLM
                     KCLVGLFTPDSGHIYFNGEDVLAMGREQHKQLRQQIGMLFQGSALFDSMTVEQNVMFP
                     LDMFTKDDYATKLKRVNEVLERVNLKDTNKKFPAEISGGMKKRVGIARAIVLNPKFLF
                     VDEPNSGLDPQTSLVIDQLIKDLTVEFNTTTVINTHDMNSVMEIGDNILYMYQGYKQW
                     TGSNKDIIFSEDEKLNSFIFASEFLQDAKHLRMLEAKGQLPPDPNQS"
     gene            1423..>1761
                     /locus_tag="VLL95_10440"
     CDS             1423..>1761
                     /locus_tag="VLL95_10440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39321.1"
                     /translation="MRPSKVKLAISTFLLLAFSIMATAHEFWLEPVSFWGSRMVIRLK
                     VGEHYSGENWKGDYGKVRSLAFVNHNQVNTLDPHAVLAHKGDSLQLSVPFEGTQTLIF
                     NSTNSFIQLGA"
BASE COUNT          462 a          425 c          424 g          450 t
ORIGIN      
        1 atcggttcgt tgcctatcgt actcatcatt tctgttttcc tgggaatggt aatgactgtg
       61 caaaccgcct accagctcgt gtccaacctg atcccccaat ccaccatcgc ggtggtggtt
      121 cgcgacagca tgttgttgga attatcgccc actgttattt gcgtggtgct ggcaggtgtg
      181 gtaggcagca agattgccag cgaactgggc aacatgcgca tcagcgagca aattgatgcc
      241 ttggaaataa tgggcatcaa tacaaaaacc tatctcattt tgcccaaaat tgcggcggca
      301 ctgatcaccg tacccatgtt ggtttcgctt tcagtcattg tttcgctttg gggtgggcgt
      361 tttgtgggcg atgttgccag cattattgat tctgccactt acgaccaggg cttgctgaaa
      421 gatttcaacc cctacaatgt ttgggtggct attgccaagg cactcacctt ttcaattatc
      481 atctccagtg tcactgccta tttcggttac aatgtaaaag gaggtgcgct tgaaattggc
      541 cgaagcagca cactcgcagt ggtggtaagt tgtattctca ttttactggc cgattatgta
      601 ctcacacttt tgatgctcaa tccatgatta tagtagatca tatcaggaaa tcttttggcg
      661 acagaacggt actgtacgac atcagtgcca gtttttatcc cggcaaatgc aatcttatta
      721 tcggtaccag cggcagtggc aaaacggtac tcatgaagtg cctggtgggg ctttttacgc
      781 ccgacagcgg ccacatttat tttaatggtg aagacgtgct ggccatgggc cgtgaacaac
      841 acaaacaact gcggcagcag attggcatgc tgttccaggg ctctgcccta ttcgacagca
      901 tgaccgttga gcagaatgtg atgtttccac tggacatgtt taccaaggat gactacgcca
      961 ccaaactgaa gcgggtgaat gaagtgctgg agcgggtgaa cctgaaggat acgaacaaga
     1021 aatttcctgc cgaaataagc gggggcatga aaaaacgggt gggcatcgcc agggccattg
     1081 tgctgaaccc gaaattcctg ttcgtagatg aacccaacag cggcctggac ccacaaacaa
     1141 gcctggtgat tgaccaactc atcaaagacc tgaccgttga attcaacacc accacagtca
     1201 tcaataccca cgacatgaac agcgtgatgg aaattggcga caatatcctg tacatgtacc
     1261 agggttataa acagtggacg ggtagcaaca aagacatcat tttcagtgaa gatgaaaaac
     1321 tgaacagttt catttttgcg agtgagtttt tgcaggatgc caaacacctg cgcatgctcg
     1381 aagccaaagg ccaattacct cccgatccga atcaatcata atatgcgccc atcaaaagtt
     1441 aaactggcca tcagcacatt ccttttgctg gccttttcaa taatggccac tgcccatgaa
     1501 ttttggctgg aaccggtttc attttggggt tccaggatgg tcattcgcct gaaagttgga
     1561 gagcattaca gcggcgaaaa ctggaaaggt gattatggca aagtgcggag cctcgccttt
     1621 gtcaatcaca accaggtgaa tactttggat cctcatgctg tgctggccca caaaggcgac
     1681 tccctccaac tgagtgtgcc ctttgaagga acacaaacac tgatcttcaa cagcactaac
     1741 agttttatac aacttggcgc c
//
LOCUS       DATIQF010000615         4775 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_25224, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000615 DATIQF010000000
VERSION     DATIQF010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4775
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25224"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1023
                     /locus_tag="VLL95_10445"
     CDS             <1..1023
                     /locus_tag="VLL95_10445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39322.1"
                     /translation="TDYNAHKAIWHLQKGGAIVQTAFRPFSMNIGGSNKSFGYGSISI
                     PVNLQRISSDSLFTLVQQVSAGTGITIHAVNTGYNTGGVDLGSNFIRTVKKPEVVMLI
                     GPGVSPPEAGEIWHLLDERLGMPITKLDILNLGRAPLDRYNTMIMVSGQYGQFIDKNA
                     ADKIKAWVQNGGTLITLKTGSEWAIRNGFTKEKLLVDSSKTAQVRYNFDEAPEREGAK
                     ALGGSIFRVDLDTTHPIGFGFSQRSVAVYRNNLTVLQPSTNAYSTVAQYSNDPLIAGY
                     LHPTSQRKVKNSAAILVGNEGNGRVILFSDNPNFRGTWYGTNKLFLNALFFGSLTNVP
                     SPGGSE"
     gene            1166..2095
                     /gene="rsgA"
                     /locus_tag="VLL95_10450"
     CDS             1166..2095
                     /gene="rsgA"
                     /locus_tag="VLL95_10450"
                     /inference="COORDINATES: protein motif:HMM:TIGR00157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HSR39323.1"
                     /translation="MNATVYRSTGSWYDLKDDAGQAWKARIKGVFKIDGITSTNPIAV
                     GDRVYFDVDNENEHTGIISSIGDRHNYISRQSPSHRKQHHIVASNLDQAMVIATIRDP
                     RTSTGFIDRFLVATEAYHVPAILLINKMDAWKEKDRLLYEEWKARYVAIGYQVMAVSV
                     QANEGMEDVMQLLQDKTTLLSGHSGVGKSSLLNALVPEWKLRTGEVSGWSGKGMHTTT
                     FAEMFDLPFGGRVIDTPGIREFGIVDIDREELSHYFPEMRELIHDCQFNNCLHINEPG
                     CAVKKAVEEGRISSDRYFSYLNILESIPENDWE"
     gene            2179..2946
                     /locus_tag="VLL95_10455"
     CDS             2179..2946
                     /locus_tag="VLL95_10455"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSR39324.1"
                     /translation="MALPEWVTGVITNIIDETSDTKRFFFEIPSLSAFDFEPGQFVTL
                     DLPIHEQKNKRWRSYSIASAPDGTNKFELVIVLNEAGAGTTWLWANAHVGTEILLRGP
                     QGKFTMPETLDRDLYLVCTGTGIAPFRSMVNHILTKGIAHRNIYLIFGCRKFNNTLYG
                     PEMRQLAQDLEGFKYIPTYSREPADNPQLQRTGYVHLVYEELVAQNTRKHQEEGGEGL
                     APAYFFLCGWKNMIDEARNRLTAMGYDKKSVHFELYG"
     gene            3030..3362
                     /locus_tag="VLL95_10460"
     CDS             3030..3362
                     /locus_tag="VLL95_10460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39325.1"
                     /translation="MACLMTGGFALLSFDHDFVLAAFLSVAALGMLLLVFFHDRPLKN
                     LETRTSLFFVFESLMLAVIAWKLYDQGFHKATFLFEGLSIVFISLAAFSFMLRKKRNV
                     LFSEEEMR"
     gene            3607..3957
                     /locus_tag="VLL95_10465"
     CDS             3607..3957
                     /locus_tag="VLL95_10465"
                     /inference="COORDINATES: protein motif:HMM:NF012717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HSR39326.1"
                     /translation="MGAGSLIALAIAAVAFSGIALSIAKLVLKATTNKQKGEAYECGV
                     PTKGPNWIQFNVGYYLFALVFLIFDVELVFLYPWAVVVKNVGWIALVEIVVFFFILFL
                     GLLYAHKKGALEWK"
     gene            3983..4600
                     /gene="nuoB"
                     /locus_tag="VLL95_10470"
     CDS             3983..4600
                     /gene="nuoB"
                     /locus_tag="VLL95_10470"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF005012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoB"
                     /protein_id="HSR39327.1"
                     /translation="MSEAPLNESQPLTPEAAPTPAPRKSIEELAGPTPFPGTVHQTPG
                     GGILVSAMDEVINWARSNSLWPLTFGTSCCAIEMMSAYSAKYDWSRFGFEVARASVRQ
                     ADVIIIAGTIVNKMAPVLKRLYDQMADPKYVVAMGACATSGGPFFYNTYSVVKGADHV
                     IPVDVYVAGCPPRPEALIHALMSLQVKIKAGMTREQIRDEMKGTQ"
BASE COUNT         1248 a         1253 c         1189 g         1085 t
ORIGIN      
        1 accgactaca atgcgcacaa agccatctgg catttgcaga aaggtggcgc catcgtgcaa
       61 acagccttcc gtcctttcag catgaatatc ggcggcagca acaaatcgtt tggctatggc
      121 agcatcagta tacctgtgaa cctgcaacgc atcagctccg actccttgtt cacactggtg
      181 caacaggtat cagccggtac tggcatcact atacatgcag taaataccgg ctacaatacc
      241 ggcggcgttg acctcggcag caacttcatc cgcaccgtga aaaagcccga agtagtaatg
      301 ctcattggcc caggggtgag cccgccggaa gccggcgaaa tttggcacct gctagatgag
      361 cgcctcggca tgcccatcac caaactggat atcctgaacc tgggccgggc accgctcgac
      421 cgctacaata ccatgatcat ggtgagtggc cagtatggtc agttcatcga caaaaacgct
      481 gctgataaaa taaaagcctg ggtgcaaaat ggcggcacac tcattacgct gaaaaccggc
      541 agtgaatggg ccatccgcaa tggattcacc aaagagaaat tgctggtgga cagcagcaag
      601 acagcacagg tacgatacaa ttttgatgaa gcaccggaac gcgaaggagc caaagccctg
      661 ggcggttcca ttttccgggt agacctcgac accacgcatc ccattggctt tggtttcagc
      721 cagcgcagtg ttgccgtgta ccgcaacaat ttgacggtat tgcaaccaag caccaatgct
      781 tacagtactg tggcacaata cagcaacgat ccgttgatag ccggttacct gcatcccact
      841 tcgcaaagga aagtgaagaa cagtgccgcc attttggtgg gcaatgaagg caatggccgg
      901 gtgatcctgt tcagcgacaa tcccaacttc cgtggcacct ggtatggcac caacaaactg
      961 ttcctgaatg cgctgttctt tggcagcctc accaatgtgc catcacctgg cggatcggag
     1021 taaaaaacga ttacgatcaa aaatgaataa tacgctgcgt tgtgattatt gatggatcat
     1081 tacctgcatt ggatccatca ataatcgctg gctgcagccg gcaagaagaa acaaacctaa
     1141 tttcgcccca caagcgaaag tgaaaatgaa cgccaccgta taccgcagta ccggcagttg
     1201 gtacgacctg aaggatgatg ccggccaggc ctggaaggcc cgcatcaaag gcgttttcaa
     1261 aatcgacggc attaccagca ccaatcccat tgccgtgggc gaccgggtat actttgatgt
     1321 tgacaatgaa aatgaacata ccggtatcat ttcatccatt ggcgaccggc acaactacat
     1381 cagccggcag agccccagcc atcgcaagca gcatcatatt gtagccagca atctcgacca
     1441 ggccatggtc atcgctacca ttcgcgatcc ccgcacttcc acaggcttta tcgaccgctt
     1501 ccttgtagcc acggaggcct accatgtacc cgctattttg ctcatcaata aaatggacgc
     1561 ctggaaggaa aaagaccggc tgctgtatga agaatggaaa gccaggtatg tggccatagg
     1621 ctaccaggtg atggcggtaa gtgtgcaggc caacgaaggg atggaagacg tgatgcaact
     1681 gctgcaagac aaaacaaccc tgctgagcgg ccacagtggc gtgggcaaaa gcagcctgct
     1741 gaatgccctg gtgccggagt ggaagctgcg caccggcgaa gtaagcggct ggagtggcaa
     1801 gggcatgcac accaccacgt ttgccgaaat gtttgacctg ccttttggcg gccgcgtcat
     1861 tgacaccccc ggcatccgcg aattcggtat tgtagacatt gaccgcgaag aactgagcca
     1921 ctatttcccg gaaatgcggg agctgatcca cgattgtcaa ttcaacaatt gcctgcatat
     1981 aaatgaaccg ggctgcgcgg tgaaaaaagc agtggaagaa ggacgcatca gcagcgaccg
     2041 ctatttttcg tacctgaaca tcctggaatc catccctgaa aatgattggg aataaatgcg
     2101 catcccccgc attcgattgc gcacaaaatc attcctcgtt gtatcattcc cccttatctt
     2161 tcaaaaaatt ttctgcgtat ggcgttgcct gagtgggtga ccggtgtgat caccaacatt
     2221 atcgacgaga cctctgatac caagcgtttc tttttcgaaa ttccctcgct ttctgctttt
     2281 gattttgaac ccggccagtt tgtgacactg gacctgccca ttcatgaaca aaaaaacaaa
     2341 cgctggcgca gttacagcat cgcttctgcc cccgatggca ccaataagtt tgaactggtg
     2401 atcgtattga atgaagcggg tgcaggcacc acctggctgt gggccaatgc gcatgtgggt
     2461 accgaaattc tgctgcgtgg cccgcaaggc aaattcacca tgcccgaaac actggacagg
     2521 gatctgtacc tggtatgcac cggtacaggc attgcaccct tccgcagtat ggtgaaccat
     2581 atacttacca aagggattgc gcaccgcaac atctacctca tattcggatg ccgcaaattc
     2641 aacaatacgc tctatggccc tgaaatgaga cagctggccc aggacctgga aggattcaaa
     2701 tacatcccca cctacagccg cgaaccggcc gacaatccac agctgcagcg caccggctat
     2761 gtacacctgg tgtatgaaga gctggtggca caaaataccc gcaagcacca ggaagaaggt
     2821 ggagaaggac tggcccccgc ctatttcttt ttgtgcggct ggaagaacat gatcgacgaa
     2881 gcccgcaacc ggctcactgc aatgggatat gataaaaagt ctgtccactt tgagctctat
     2941 ggataatctc ccggaattgc cgcttgtttc aacgcaatac tgacttagca atgcatccca
     3001 attttgtact caaatcggtt ttgcatggta tggcatgcct gatgacagga gggtttgcat
     3061 tgctgagttt tgaccacgat ttcgtgctgg cagctttcct ttctgttgcc gcactgggaa
     3121 tgttgttgct ggtctttttt cacgaccggc ccttgaaaaa cctggaaacc aggaccagtt
     3181 tgttttttgt atttgagtcg ctcatgctgg cagtgattgc ctggaagttg tacgaccagg
     3241 gctttcacaa agccactttt ctgtttgaag gattgagcat tgtattcatc agcctggcgg
     3301 ctttttcgtt catgctgcgc aagaagcgga acgttctctt cagcgaagaa gaaatgagat
     3361 aaaacatagt ggatcatatg ccattgggct ttgtaaagag cagttcttta aacaaaagag
     3421 cccatgccat ttttcgccgt atcggttcag cctgcaaccg ggtgagccat aattcacatc
     3481 ctttccttac cagcgaaaaa acatttggct gtcaactatt cctgatataa attttcgctc
     3541 tgactgacat tcgtcagcaa ccaaccgatt gcttagtttt tacattcgcc aaaaccaatt
     3601 acatctatgg gtgcaggatc gctgatagca ctggccattg ccgcggttgc cttttcgggc
     3661 attgcgctat ctattgccaa actggtgctg aaagccacca caaacaaaca aaagggggaa
     3721 gcctacgaat gtggcgttcc taccaaaggc cccaactgga tccagttcaa tgtgggttat
     3781 tacctgttcg ccctggtgtt cctcattttt gatgtggaac tggtgttctt gtatccatgg
     3841 gctgttgtcg taaaaaatgt gggctggata gccctggtag agatagttgt cttctttttc
     3901 attcttttcc tcggcctgct ttatgcccac aaaaaaggcg ccctggaatg gaaataagaa
     3961 gccctgctaa aaaaacgaaa tcatgagtga agccccattg aatgaaagcc aaccgttgac
     4021 gcccgaagcc gcgccaacgc cggctccccg caaaagcatt gaagagctgg caggacccac
     4081 tcctttccca ggcacggtgc atcaaacacc gggcggcggc atactggtaa gcgccatgga
     4141 tgaagtgatc aactgggcac gcagcaacag cctgtggccg ctcacttttg gcaccagttg
     4201 ctgcgccatc gaaatgatga gtgcttacag tgcgaagtac gactggagcc gctttggttt
     4261 tgaagtggcc cgtgcctctg tgcggcaggc cgatgtcatc atcatcgccg gtaccattgt
     4321 caacaaaatg gcgccggttt tgaaacgcct gtacgaccag atggccgacc cgaaatacgt
     4381 ggtggccatg ggcgcctgtg ccaccagcgg cggcccgttt ttttataaca cctacagcgt
     4441 agtgaaagga gccgaccacg tgattcccgt ggatgtgtat gtggccggat gccctcccag
     4501 gccagaggcg cttattcatg cactgatgag cctgcaagta aaaatcaagg ccggcatgac
     4561 gagagagcag atcagggatg agatgaaggg aacacagtga ggaagatgtg gggatttctg
     4621 atctctgatc tctgattttg gataatgcct gaaaaattac agggctctgc aggaacgaac
     4681 cagaaacaac aaacactttc accagaactc aatcgacaaa ctgatgcttc gcgaagaatt
     4741 acaacaacat attgcctccc ggtttccaga ctaca
//
LOCUS       DATIQF010000616         1923 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_100944,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000616 DATIQF010000000
VERSION     DATIQF010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1923
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100944"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..475)
                     /locus_tag="VLL95_10475"
     CDS             complement(<1..475)
                     /locus_tag="VLL95_10475"
                     /inference="COORDINATES: protein motif:HMM:NF036808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39328.1"
                     /translation="MQTIYLRKKIAPRIENGHPWIFANEVDLARSASASTPQAGDIVE
                     VRNGFDKFVGYGYINPKSQILVRLLSRNQKDVIDEAFFHRRIAEAWAYRQHIGYTENC
                     RLIFGEADEMPALIIDKFNDYFVLQTLAYGMEVWKPAIVKALNAIFQPKGIYERND"
     gene            784..>1923
                     /locus_tag="VLL95_10480"
     CDS             784..>1923
                     /locus_tag="VLL95_10480"
                     /inference="COORDINATES: protein motif:HMM:NF024891.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR39329.1"
                     /translation="MAKSIFIATSEPYSGKSVVALGVLNMLLGKARKVAYFKPIINEE
                     RPGKRDSDIETVLSHFNLPMQYEDCFAFTRSQALQHLEKDSRGELIDVMINKVKQLED
                     QFDFTVIEGSDFQGEGTAFEFEANVAIANNLSAPVIMVISGQGKTTEQIANSVNTVLG
                     NFEDENVEVLAVVVNKVLPEEEETVRTILREQLDNDILLAVIPRMKPLQSPNMKEIYD
                     LLGGKLLLGEELLTNRVDNFITGAMQLPNFLSHISENVLIVTPGDRGDIIIGALQANL
                     SVNYPNVAGIVLTGGIEPEEQIIRLMEGSKSVLPIIAVRTGTFRTTATLGTIQSKLTS
                     DNPKKIQLAISTFEKYIDMDALEQQMITYQSEGITPHMFQYQLTRK"
BASE COUNT          491 a          472 c          518 g          442 t
ORIGIN      
        1 catcgttgcg ttcataaatg cctttgggtt ggaagatggc attgagtgct ttcacaatgg
       61 cgggcttcca tacttccatg ccataggcca gtgtttggag tacaaaatag tcgttgaact
      121 tatcgatgat gagggcgggc atttcatcgg cttcgccaaa aatgagacgg cagttttcgg
      181 tgtagccaat gtgctggcga taggcccagg cttcggcaat gcggcggtga aaaaaagctt
      241 cgtcgatgac gtctttctgg ttgcggctca gcaggcgcac cagtatctgg cttttgggat
      301 tgatgtagcc gtagccaacg aatttatcga agccgttgcg cacttccaca atgtcgccgg
      361 cttgtggtgt gctggcgctg gcgctgcggg ccaggtctac ttcattggca aagatccaag
      421 gatggccgtt ttcaatacgg ggcgcaatct tcttgcgcag gtaaatggtt tgcatagaca
      481 gttttttgtg gaagcctgcc gcttcccggt tgtaaaacaa gggggcaaag gtaattcatg
      541 aacgtcatcc cgaacggaga gagggatctt ttcgatggga ggaggaatag gttgctggtt
      601 gtttgttgtt agttgttggt ttggatggcc tgcaatattc accctgcatt cctgtcaact
      661 gtcaactatc aaccatcaac tttcttacgc cggacatcaa tcagttggaa acatgacaat
      721 cattaggttg ctttgggcag ccggcgggta atttcgcccc gcacaccaaa ggaatcaaat
      781 catatggcga agtctatttt cattgccaca tcagaaccct atagcggcaa gtcggtggta
      841 gcattgggcg tgctcaacat gctgctgggc aaggcccgca aagtggccta tttcaaaccc
      901 atcatcaacg aagaacggcc gggcaaacgc gacagcgata tcgaaaccgt tctctcgcat
      961 ttcaacctgc ccatgcaata cgaggactgt tttgccttta cccgcagcca ggccctgcaa
     1021 cacctggaaa aggacagccg tggcgaactg atcgacgtga tgatcaacaa ggtgaaacaa
     1081 ctggaagacc agttcgattt tactgtgata gaaggcagcg atttccaggg cgaaggcaca
     1141 gcgtttgagt ttgaagccaa cgtggccatt gccaacaacc tgagcgcccc cgtgatcatg
     1201 gtgatatcgg ggcagggaaa aaccacggag caaattgcca acagtgtcaa taccgtgctg
     1261 ggcaattttg aagacgagaa cgtggaagtg ctggcggtgg tggtaaacaa agtgctgccc
     1321 gaggaagaag aaactgtcag gaccatcctg cgtgaacaac tcgacaacga catcctgctt
     1381 gcggtgatac cccgcatgaa gccgttgcaa agtcccaaca tgaaagagat ctacgatttg
     1441 ctgggcggca agttgttgct tggcgaagaa ctgctgacca accgggtgga caattttatt
     1501 accggcgcca tgcaactgcc caatttcctg agccatattt cggaaaacgt gttgattgta
     1561 acgcccggcg acaggggcga tatcatcata ggtgctttgc aggccaatct ttcggtgaac
     1621 tatcccaatg tggcgggcat cgtacttacc ggcggcattg aacccgaaga acagatcatt
     1681 cgcctgatgg aaggatcgaa gtcggttttg cccatcattg cagtgcgcac cggtactttc
     1741 cgcaccacgg ccaccctggg caccatccaa tcgaaactaa cgagcgacaa cccgaaaaaa
     1801 atacagttgg ccatcagcac cttcgagaag tatatcgaca tggatgcgct ggaacagcaa
     1861 atgatcacgt accagtccga aggcatcaca ccgcatatgt tccagtacca gctaacgcga
     1921 aag
//
LOCUS       DATIQF010000617         8989 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_25299, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000617 DATIQF010000000
VERSION     DATIQF010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8989
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25299"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VLL95_10485"
     CDS             <1..326
                     /locus_tag="VLL95_10485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39330.1"
                     /translation="SVLEMYNEGYVQPVQRTDVKVLGRGALGAMLAGLNGMRLGNYIT
                     EHDVKIAKKLAYVMCGGDLSEATLVSEQYLLDIEREAFLSLTGEKKTLERIQSVLKGG
                     KPVRN"
     gene            513..1028
                     /locus_tag="VLL95_10490"
     CDS             513..1028
                     /locus_tag="VLL95_10490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39331.1"
                     /translation="MALKSSASTNMRVIHRYLGFFLCGIMAVYALSGILLIYRDTDLL
                     KKEKQIEKLVAPNLEDKAIGEAIGLKQLKIINTTGDTVHFENGTYTRSSGKAVYTVKE
                     LPYVLSKMTKLHKAKSAEPLYFLNIFFGISLLFFVVSTFWMFAPKSSIFKKGLYFTLA
                     GVILTLALLFW"
     gene            complement(1049..1969)
                     /locus_tag="VLL95_10495"
     CDS             complement(1049..1969)
                     /locus_tag="VLL95_10495"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HSR39332.1"
                     /translation="MNKSLAIFILAGVTAVASAQLPQVSSGRLVRHASFSSKYVTSRN
                     VDVWLPDGYDGKEPFDVLYMHDGQMLYDSNTTWNKTDWQVDETLSQLMATRKIRPCIV
                     VGVWNGGVTRHPDYFPQNPFESMSSIEKDTVTAQLQRAGRTKEIFHPNSDNYLKFLVK
                     ELKPFIDSSYKTNSGQAHTFVAGSSMGGLISMYAICEYPEVFGGAACLSTHWPGVFTM
                     ENNPVPAAFFNYLKTHLPSPAAHKIYFDYGDQTLDALYPPLQRQADAIMKERGYDSKN
                     WKTVFFEGQNHSEKAWASRFDIPVLFLLGK"
     gene            2081..2716
                     /locus_tag="VLL95_10500"
     CDS             2081..2716
                     /locus_tag="VLL95_10500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39333.1"
                     /translation="MRRNNCLRQFAMMLFVLFLFQTQAVSQDTTAKKKKTLDHFSIAF
                     TNNHSAYPFSSFSQLVAGTWHPGVEFGTGFNWSVKKKHDWYQEFRLGYFYHQFVQHGV
                     PLYTNFGYRYKFSQRWRAQAGLGLGALFSFPDHDRFKLNSDGNYEKISGVRLQGMFVF
                     NLGAGYQFARTKKHPLEAFITYQQRIQTPYVPNYVPLLPYNSLMFGLKWYR"
     gene            2758..3945
                     /locus_tag="VLL95_10505"
     CDS             2758..3945
                     /locus_tag="VLL95_10505"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HSR39334.1"
                     /translation="MKNILILLILVSIFLSCEKPAITDVTAPSAEIPWADSSSRHAKN
                     TAYRNLIEKYRKKGFPGISLLVNDRFGTWVGSTGYADLAAKTPFGTSQISKIASITKL
                     YVGTTIFKLIEDSANTKLGYSFLNDPISKWLPSRIVDQLPNGKLITLGDCMKHETGIP
                     NIEDNDRFYLAVLNEPVRKWELEEILEFEYGQDPLFKPRDTAIYSSTNTTIVAMIAEA
                     ATGQKHSELIKKYIFRPLGMTNTYYQPHDALPNTVAQGYFDLYNNSTIANVSNIVTGS
                     GNGYGGMFSNVFDMWKFLDAMYLKKTLLTQKSLNIMNTWGKPDDPNKYGYGSMLKYIS
                     RGSDAGIGHSGRDLGYSANLFWFPNRNVSHCFVLNYGTNGDSQLRTVFREFEQELMDV
                     TFQ"
     gene            complement(4017..4670)
                     /locus_tag="VLL95_10510"
     CDS             complement(4017..4670)
                     /locus_tag="VLL95_10510"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HSR39335.1"
                     /translation="MNQHQNTPELQMTIPYRRVWRMDHVNKDGMSFQHFYQACNPAIS
                     VSAANVQWTSSVTKRVVWFGLLVITLLLTVSGTYAQQTARTRLPENSGKPAIDPQNGL
                     EVSLITPFPIILRGKVVDHFGNGVKGAMVQVMVKGAKVSALTDADGNYTIELEGGYKY
                     GSIQVAADNFRTTEKELNLQDLSAIGTLVPVVTKMELLEDDLIKAIRPGMKVNGTVK"
     gene            4846..5466
                     /locus_tag="VLL95_10515"
     CDS             4846..5466
                     /locus_tag="VLL95_10515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39336.1"
                     /translation="MQQPVHRHSRNRNVWMEGLNFEGFSGNFGKIAVGILLLVGIILA
                     SSGKRIDKADLRSAVVHAMNKPYQPGLDNNKKLYLILPVKEGKKILIIESFALKAGGL
                     ENLKTSIQANDELTVWMDPINDSLLRESGGGMRPVVTLLQKGPEYLISEDAYNRELRS
                     NSMIGWWVIAMALSMVPYFFIQSPRIPPAWVFLGVLTAMIVWLLIQ"
     gene            5625..7205
                     /gene="atpA"
                     /locus_tag="VLL95_10520"
     CDS             5625..7205
                     /gene="atpA"
                     /locus_tag="VLL95_10520"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HSR39337.1"
                     /translation="MVDIKPDEISAILRQQLSNFDAEANLEEIGTVLQVGDGIARIYG
                     LNNVKSGELVEFENGVKAIALNLEEDNVGVVLMGDSAEIKEGDKARRTGKIASIKVGE
                     GLLGRVINTLGEPIDGKGPIAGELFEMPLERKAPGVIYREPVKEPLQTGIKAIDAMIP
                     IGRGQRELIIGDRQTGKTAIAIDTIINQKEFFAAGQPVYCIYVAIGQKASTIAGVMKT
                     LEDNGALPYTVIVAASASDPAPQQFYAPFAGAAIGEFFRDTGRAALIIYDDLSKQAVA
                     YREVSLLLRRPPGREAYPGDVFYLHSRLLERAAKIIGKDEVARNMNDLPDNIKHLVKG
                     GGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLENNLFNAGIRPAINVGISVSRVG
                     GNAQIKSMKKVAGTLKLDQALYREMEAFSKFGGDLDAATRMVLDKGARNVEILKQHQY
                     SPFAVEKQVAIIYLGTQGLLREVAVKNVKAFEDHFLLEMESKHPNILAEFKKGNLPED
                     ALKTMTELAKQLAVQYKK"
     gene            7692..>8989
                     /locus_tag="VLL95_10525"
     CDS             7692..>8989
                     /locus_tag="VLL95_10525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39338.1"
                     /translation="MKRLFTLMAGLVLWTGVTAQVQHAPLVNVIDLYTSPSNLRPTSA
                     PYTMPFKFKENRYLLFIFTGEFNKDQDYPTTISYNGKPATLLGLSVGSDAEATDAKTA
                     VAVFGIKDATLGAETAKGGTYNIDITWFQTGSISNNQSYVLTVTCYRYVNQDDPGNFC
                     INGSIGNDQDVLTCNPVTAGIGDLLWHVTQFSRALQVNTSQPPVNTNSFMDVHYNALL
                     PTGNMPAKAFVGTIWDQLVSDAMAAGDADGDLNTLTYTPTFNNASGTNPGRWVVASIR
                     AKYAPIYQNYSGQVWIDKDGDKAMEPDVEFVPSAGAYVFVAVASNGPNTGKVVAASVL
                     DGDGKFNFSLLANQVEVGGIYMDPTYTLAIVRFAVAPHAGESYPTTPGNAMGSAPTSN
                     TPYYVTTAGGTYIMGSNGVATNVTVSVPVQDKYYEIGIQSP"
BASE COUNT         2431 a         2208 c         2087 g         2263 t
ORIGIN      
        1 gcagtgtgct ggaaatgtat aacgaaggct atgtgcaacc cgtgcagcgc accgatgtga
       61 aagtgctggg gcgtggggca ctgggagcta tgctggccgg cttgaatggc atgcgcctgg
      121 gcaactacat taccgagcat gacgtgaaga ttgcgaagaa actggcctac gtaatgtgcg
      181 gcggcgacct gagcgaagcc acattggtaa gcgagcaata cctgctggat attgaacgcg
      241 aagccttcct gagcctgaca ggcgaaaaga aaacattgga gcgcatccag agtgtgctga
      301 aaggtggcaa gccggtaagg aactagcaca ctcgctattg gcaaaagaat aatttgaaag
      361 ccgcttcctg ttggagcggc ttttttctgc tctttctgtg aaatggcttt tcctgcgaat
      421 ggttttgacc ccttatcact ttgtgcatgg attgcatttg caatagcaaa ggcacaattg
      481 atataatatt gcgccccaaa agcaaccaca acatggcatt gaaaagttct gcaagtacca
      541 atatgcgggt tattcaccgc tacctcggct tctttttatg tggtattatg gcagtgtatg
      601 ccctgagcgg cattctcctt atttatcgag atacagacct gctcaaaaaa gaaaagcaaa
      661 ttgaaaaact ggttgctccc aatttggaag acaaagccat aggtgaagcc atcgggctca
      721 agcaattaaa aataattaat acaacaggcg atacggtgca tttcgaaaac ggcacataca
      781 ccaggagcag cggcaaagca gtatacacgg taaaagagtt gccctatgta ctgtccaaaa
      841 tgacgaaact tcacaaagcc aaatcggccg aaccgctcta ttttctcaac atttttttcg
      901 gcatctccct gttgtttttt gttgtttcca ccttctggat gtttgctccc aaatcttcta
      961 ttttcaaaaa aggattgtac ttcacgcttg ccggggtgat actgacttta gcgttgcttt
     1021 tttggtaaaa ggccggtcat aaattcaact attttcccag caggaacaat accgggatat
     1081 caaatcttga agcccaggcc ttctcactgt ggttttgacc ttcaaagaat accgttttcc
     1141 agtttttcga atcgtatcct ctttctttca ttatggcatc agcctgccgc tgcaagggag
     1201 gatacaaagc atcgagcgtt tggtcgccat agtcaaaata aattttgtga gcagccggtg
     1261 aaggcagatg ggttttcagg taattgaaaa atgcggcagg aacaggattg ttttccatgg
     1321 taaatacacc tggccagtgg gtgctcaggc aagcggcgcc accaaacact tcgggatact
     1381 cgcaaatggc atacatcgaa atcaatccgc ccatactgct gcctgccaca aatgtgtggg
     1441 cctgcccgct gtttgttttg taggagctgt caatgaatgg cttcagttcc tttaccagga
     1501 acttcaggta attgtcagag ttgggatgaa aaatttcctt ggtccttccc gctctttgca
     1561 gttgcgcagt tacagtatct ttttcaatgg aagacatcga ttcaaacgga ttttgcggaa
     1621 aatagtccgg gtgacgggta acccctccat tccacacgcc gacaacgatg cagggccgga
     1681 tcttcctggt agccatcaat tgggacagcg tttcatccac ctgccaatcg gtcttgttcc
     1741 aggtagtatt gctatcgtac aacatctggc catcgtgcat gtacaataca tcaaaaggct
     1801 ctttgccgtc gtagccatcg ggcaaccaaa catccacatt tcgggatgtt acatactttg
     1861 acgagaagga agcatgacgc accagcctgc ccgaagaaac ctgcggcaat tgggctgaag
     1921 cgactgcggt gacacccgcc aggatgaaaa tggctaatga tttattcata ttaaatgcat
     1981 tcaattcgct gcaaaacagg gtgcaatttt cacctcaaaa tatgcctgaa ctcaccaatt
     2041 gtgcaattta tctttcgtag attaggaaaa acattacagc atgcgccgaa acaactgctt
     2101 gcgccagttt gcaatgatgc tttttgtcct ttttcttttt cagactcaag ctgtatcgca
     2161 ggataccact gcaaaaaaga aaaaaacgct ggatcatttc agcatcgcat tcaccaacaa
     2221 tcattcagcc tatcccttct cttccttttc ccaattggta gcgggtacct ggcacccggg
     2281 ggtggaattt ggaaccggtt tcaattggtc agtaaaaaag aaacacgatt ggtaccagga
     2341 attcaggctt ggttatttct accaccagtt tgtgcaacat ggtgtgccac tctataccaa
     2401 ctttggctac cggtataagt tctcgcaacg ctggcgggcg caggccggtc ttggtttggg
     2461 tgcccttttt tctttccccg atcacgaccg tttcaaactg aacagcgatg gcaactatga
     2521 aaaaataagt ggggtaaggc tgcagggcat gtttgttttt aacctgggag cgggctacca
     2581 gtttgctcgc accaaaaaac atcctttgga agcctttatt acctatcagc agagaattca
     2641 aacaccatac gttcccaatt atgtgccact gctgccttac aacagcctga tgtttggtct
     2701 gaaatggtat cgttgacatt ggcccattta tcccatccac gcttaagaac aaattgtatg
     2761 aagaacattc tcatccttct tatactggtt tcaatattcc tgtcctgcga aaagcctgcc
     2821 attaccgatg taactgctcc atctgctgaa ataccatggg ctgacagcag cagccggcat
     2881 gcaaaaaaca ccgcctaccg gaacctgata gaaaaatacc gcaagaaggg atttccgggc
     2941 atatcactgc tcgtcaacga ccggtttgga acatgggtag gcagtaccgg atatgccgac
     3001 ctggccgcga aaacgccatt cggcacttcg cagatcagca agattgccag catcacaaag
     3061 ttgtatgtag gcaccacgat cttcaaactg attgaagatt cggccaatac caaactgggg
     3121 tacagctttc taaacgaccc tatcagcaag tggctgccct cgagaatagt tgatcaattg
     3181 cccaatggca aattgatcac acttggtgat tgtatgaaac atgaaacggg cattcccaat
     3241 attgaagaca atgacaggtt ctacctcgct gtattgaatg agcctgtgag aaaatgggaa
     3301 ttggaagaaa tactggaatt tgaatacgga caagacccgc ttttcaaacc cagggatacc
     3361 gccatctaca gcagtaccaa cactaccata gtcgccatga ttgcagaggc ggctaccggc
     3421 cagaaacata gcgaactcat taagaaatac attttccgtc cactggggat gactaacacc
     3481 tattatcaac cgcatgatgc cttgccaaac acggtagcgc agggctattt cgacctgtac
     3541 aataacagca ccattgctaa tgtgagcaac attgtaaccg gaagcggcaa cgggtatggc
     3601 ggcatgttca gcaatgtatt tgacatgtgg aaattcctgg atgccatgta cctgaagaaa
     3661 accttgctca cgcaaaagtc gctgaacatc atgaacacct ggggcaaacc cgacgaccca
     3721 aacaagtatg gctatggcag catgctgaaa tacataagca gggggtctga tgccggcatt
     3781 ggtcacagtg gccgcgacct tggatacagc gccaacttat tctggtttcc caacaggaat
     3841 gtgtcacatt gctttgtgct caactacggc accaatggcg acagccaatt gagaaccgta
     3901 ttccgggaat ttgaacagga actaatggat gttactttcc aatagttcct gtttcaaaaa
     3961 aaacacaact accattcacc tgcctctaag tctcagcatt aaaaaacaca acatcattac
     4021 ttgaccgttc catttacttt catgccggga cgaatagctt ttatcaaatc atcttccaac
     4081 aattccattt tggtgaccac tggcacgagg gtgccaatgg cagacagatc ctgcaggttt
     4141 aattcttttt ctgtggttct gaaattatca gctgccacct gtatggaacc atacttgtat
     4201 ccgccctcca gttcaatcgt ataatttccg tccgcatcgg tcagggcaga aactttagct
     4261 ccctttacca tcacctgcac catcgcccct ttcactccat ttccaaaatg atccaccacc
     4321 tttcctctca ggataatggg gaagggcgta atgagagata cttccaaacc gttttgtgga
     4381 tcaatggctg gcttgccaga attctccggc agtcttgttc gggcagtttg ctgcgcatag
     4441 gtacctgaca ctgtcagcaa taatgtaatc accagcaaac cgaaccatac cacccgtttc
     4501 gtaacagagc tcgtccattg tacattggca gctgaaacag aaatggcagg gttacaggcc
     4561 tggtaaaaat gttggaatga cattccatcc ttgttgacgt ggtccattcg ccaaacacgg
     4621 cgataaggaa tggtcatttg cagctcgggg gtgttttgat gttgattcat acagatggct
     4681 tttgtatggg atgcgctgtt gttttgtttt gcacaatggg cagaagagaa agaaatgtga
     4741 ataagcggaa tggtggcact gaccagtgaa tatcaaaaag accaaaacag tttggctcat
     4801 gtcactggtg gcctccttta ctttgcaggc aattatccca ttcagatgca acaacctgtt
     4861 caccgccatt cccgtaaccg taatgtttgg atggaaggcc tcaacttcga aggcttcagt
     4921 ggcaattttg gaaagattgc tgttggcatt ctgttattgg tgggcattat cctggcgagc
     4981 agtggcaaga gaattgacaa agccgatctg cgcagcgcag tggttcatgc catgaacaaa
     5041 ccttaccaac ccggcttgga caacaacaaa aaactgtacc tcatcctccc ggtaaaagag
     5101 ggaaagaaaa tcctgatcat agaatccttt gccctaaagg caggcggctt ggaaaacctg
     5161 aaaacatcta tccaggccaa tgacgaactg acggtttgga tggaccccat aaatgactcg
     5221 ctgctgcggg aaagcggtgg gggcatgcgg ccagtggtca ccttgctgca aaagggaccg
     5281 gagtatctga tcagtgaaga tgcctacaac cgcgaattgc ggagcaacag catgatagga
     5341 tggtgggtaa tagccatggc attaagcatg gtcccctact ttttcatcca atcgccccgc
     5401 atacctccgg cctgggtgtt tttgggtgtt ttgacagcca tgatcgtttg gctgctgata
     5461 caataacccg ccggacacgc cccccatcgt taaatattgg ccaatgccat cgtaaggcgc
     5521 caaaaatgca tttgttaact cagccgggcg gccttacttt tgcggcctga attttagggg
     5581 taacccctgg aaaactgaat tttttaccct cttaatagat aattatggtg gacattaagc
     5641 cagatgaaat ttcggcgatt ctgcgccagc aactcagcaa ttttgatgcc gaggccaacc
     5701 tggaagaaat tggcaccgtg cttcaggtgg gcgatggtat tgcccgtatt tatggcctga
     5761 acaatgtaaa aagcggtgaa ctcgtagagt ttgaaaatgg tgtcaaagcc attgccctca
     5821 acctggaaga agacaatgtg ggtgtggttt tgatgggcga cagtgctgaa atcaaagaag
     5881 gcgacaaagc ccgccgtacc ggcaaaattg cctctattaa ggtgggagaa ggtttgctgg
     5941 gtcgtgtgat caacaccctg ggtgaaccca tcgacggcaa aggccccatc gctggcgaac
     6001 tgtttgaaat gcctttggag cgcaaggcgc caggcgttat ctaccgcgaa ccggtaaagg
     6061 agcccctgca aactggtatc aaggccatcg acgccatgat ccccattggc cgtggtcagc
     6121 gtgaattgat cattggcgac cgccagactg gtaaaaccgc catcgcgatt gacaccatca
     6181 tcaaccagaa agaatttttt gccgccggtc aaccggttta ttgtatctac gtagccattg
     6241 gccaaaaggc ttctaccatt gccggtgtaa tgaagaccct tgaagacaat ggcgcccttc
     6301 cttacactgt aattgtagcc gcttctgcat cagatcctgc tccccagcag ttctatgctc
     6361 cttttgccgg cgctgccatc ggcgaattct tccgcgatac cggacgtgcc gcccttatca
     6421 tctatgatga cctgagcaag caggccgttg cctatcgtga ggtttcattg ctcctccgtc
     6481 gtcctcccgg ccgcgaagcc taccctggtg acgtgttcta cctccacagc cgtttgctgg
     6541 agcgtgccgc caagatcatt ggcaaggatg aagtagcccg caacatgaac gatttgccgg
     6601 acaacatcaa gcacctggtg aaaggtggag gcagcctcac agcccttcct atcatcgaga
     6661 cacaagccgg tgacgtttct gcctatattc caaccaacgt aatctcaatt accgacggtc
     6721 agatattcct ggagaacaac ctgtttaacg cgggtattcg cccggccatc aacgtaggta
     6781 tctctgtaag ccgcgtaggt ggtaatgcgc aaatcaagtc gatgaagaaa gtggcaggta
     6841 cactgaaact tgaccaggca ctgtatcgtg aaatggaagc tttctcgaag ttcggtggcg
     6901 accttgatgc tgctacccgt atggtacttg acaaaggtgc ccgtaacgtg gagatcctga
     6961 aacaacatca gtactctcca ttcgcggtgg aaaagcaggt ggctattatc tacctgggta
     7021 cccaaggcct gctgcgtgaa gttgctgtaa agaatgtaaa ggcttttgaa gatcatttcc
     7081 tgctggaaat ggaaagcaag caccccaata ttcttgctga attcaagaaa gggaaccttc
     7141 cagaagatgc cctgaagacg atgactgaat tggccaagca acttgccgtt cagtacaaaa
     7201 agtaagacct gttctatcga tagaaaaccc cttcagcacc aactgaaggg gtttgttttt
     7261 tcatcaatcc tcagcaggtg ttctgaagag taaatgtcta ttcggtactt gcgctcatca
     7321 atctctttaa tatacgcaaa aaacttgaga caagacatgc cgtaagtcgc atcaaacctt
     7381 tatgcatgtt gtaactttat atgggaaaaa cacaatccca aagcaatgtg acacaagaat
     7441 tttcctgact caagaaccct taaaaaaccc tgggtcgggt gctgcaatgc cgcagatcaa
     7501 ttagtagtag tgcattggtt ttatcaattg ccctaaaccc gaatcgcaaa ggcattgtag
     7561 tcgtactcag ttgtcattct atcggaatgg tagataaaca acaaaaaccc tgaacccaaa
     7621 tatccagaaa gatcaacatc cgcccggggt tttgaaagct ctcccatttc ataaccctaa
     7681 aatcaccttt tatgaaacgg ctatttaccc ttatggccgg gctggtgctg tggacgggtg
     7741 ttacagccca ggtgcaacac gcaccgctgg tcaatgtgat tgacttgtac acaagtcctt
     7801 ccaacctcag acctacttcg gcaccctata ccatgccttt taagttcaaa gaaaaccggt
     7861 acctgctttt cattttcacc ggcgaattca ataaggacca ggactacccc acaaccattt
     7921 cctataatgg aaagcctgcc acacttttag gcctttctgt tggttctgat gctgaagcaa
     7981 ccgatgccaa aaccgctgta gcagtttttg gcattaagga tgctaccctt ggggccgaaa
     8041 ccgcaaaagg cggcacctac aacattgata tcacatggtt ccagacgggc agtatatcaa
     8101 acaaccagtc atacgtgctg actgtgacct gctaccgtta tgtcaaccag gatgaccccg
     8161 gtaatttctg catcaatggc agcattggta acgatcagga tgtattgact tgtaaccctg
     8221 taacagcagg catcggcgat ttgctttggc atgtcaccca attcagcagg gcactgcagg
     8281 tgaataccag tcagcctccg gttaacacca actcttttat ggacgtgcac tacaacgcat
     8341 tgctgcctac cggcaatatg cccgcaaaag catttgtagg caccatttgg gaccaactgg
     8401 tttcggatgc aatggctgca ggcgatgcag atggagatct caatacgctc acctatactc
     8461 caacattcaa taatgcttcc gggaccaacc ccggcaggtg ggtggtagcc tctatcaggg
     8521 cgaaatatgc ccccatttat caaaactact ccggccaggt ttggatagat aaggacggag
     8581 acaaggcaat ggaacccgac gtggaatttg ttccttctgc cggcgcctat gtatttgtgg
     8641 ctgttgcttc caatggcccc aatactggga aagtagtggc ggcgtcagtt ttggatggtg
     8701 atggtaaatt caacttttca ctgctggcca accaggtgga agttggagga atttatatgg
     8761 atcccactta tacactggca atagtaaggt ttgcagtggc tcctcatgcc ggtgagtcgt
     8821 atccaaccac acctggtaat gccatgggaa gtgcacccac ttctaacact ccgtactacg
     8881 taaccaccgc aggaggcacc tatatcatgg ggtccaacgg ggttgcgacc aatgtaactg
     8941 tatcggtacc ggttcaggat aagtactatg aaattggcat tcaatctcc
//
LOCUS       DATIQF010000618         3029 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_85996, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000618 DATIQF010000000
VERSION     DATIQF010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3029
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85996"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..290
                     /locus_tag="VLL95_10530"
     CDS             <1..290
                     /locus_tag="VLL95_10530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39339.1"
                     /translation="VWHLPTARPSLTGEEWAEMSAAATGAPNGVQVLPLFMIRLLGLS
                     IGPLREIVELIYQNDSPYLFDSTKFEKAFSFSPMPYADGLKATLEAMRAAK"
     gene            395..1264
                     /locus_tag="VLL95_10535"
     CDS             395..1264
                     /locus_tag="VLL95_10535"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HSR39340.1"
                     /translation="MEKLTKPASGWWFLLLGFLMIVLAVISFRMANEDGMVWLHVPGV
                     AFAITFILVAIGFIAIDPNSSRVLTLFGKYVGTVKENGFYWVNPFYTKKKISLRANNL
                     DTKPIKVNDKHGNPIMIGAVIVWKVEDAYKAAFEVDNYQSFVETQSEAAIRKLAGTYA
                     YDNFEHETEEITLRSSAAEVSEKLEHEVSERLAIAGIRIIETRLSHLAYATEIAGAML
                     QRQQATAIVAARSKIVEGAVGMVEMALEQLSAKDVVHLDEERKAAMVSNLMVVLCSER
                     SAQPVLNTGSLYQ"
     gene            1354..1542
                     /locus_tag="VLL95_10540"
     CDS             1354..1542
                     /locus_tag="VLL95_10540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39341.1"
                     /translation="MPKEAKKTFVLRLDAATYQLLEKWAADEFRSINGQLEYIIDKAL
                     KEAGRSKRADISAKGKSK"
     gene            1603..2790
                     /locus_tag="VLL95_10545"
     CDS             1603..2790
                     /locus_tag="VLL95_10545"
                     /inference="COORDINATES: protein motif:HMM:TIGR03805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="parallel beta-helix domain-containing protein"
                     /protein_id="HSR39342.1"
                     /translation="MMRKTFMAAACLLLCDSLVAQPDIEKQLQTLFIMAENNSVIELP
                     EGNFKLDQSLWLDDKKNVIIRGKGMDKTILSFAGQISGAEGIKVTNCSGIRIEHLTVQ
                     DTKGDGIKTQEVDGISFVKVKAEWTRGAHEKNGGYGLYPVQCKNVLIDSCVARGASDA
                     GIYVGQSSHIIVRNSLAIENVAGIEIENSLYADVYNNEATNNTGGILVFDLPDLIQKK
                     GGHVRVFNNRVHENNHVNFAPKGNIVGKVPQGTGVMIMATNQVEIFENQIRNNKTVGT
                     AVVSYYISENPIKDSVYYPYPSLVYIHDNVYERRHERATSKGRMGQLYRFKLRFGKNV
                     PHIVYDGIVDKSNPGKLCIQNNKEETFANIDAENNFKNISRDVSKHRCSLPALEPAVV
                     KEK"
     gene            2793..>3029
                     /locus_tag="VLL95_10550"
     CDS             2793..>3029
                     /locus_tag="VLL95_10550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39343.1"
                     /translation="MKRVCVLVMFAAVAAGIASFRKYEDDAFEFHKNLSEWGFFKGDI
                     KKLEPAKGVVPYDLNTPLFSDYAVKDRFIRLPKGE"
BASE COUNT          869 a          635 c          801 g          724 t
ORIGIN      
        1 aggtgtggca tttgcctaca gccaggccgt cgctaacggg cgaagaatgg gccgaaatga
       61 gcgctgccgc tacgggagcg ccgaatggcg tgcaggtgct tccgctgttc atgatccggt
      121 tacttggatt gtctattggc cccctgcggg aaattgtgga gctgatctat cagaacgaca
      181 gtccttattt gtttgacagt accaaatttg aaaaggcctt ttccttcagc cccatgccat
      241 atgcggatgg tctgaaagcc actttggagg cgatgcgagc cgccaaatga tcctgctttt
      301 cgatattgaa aatgcttgtc ggtagcaaat tacttgacaa taccagaact tccatttaca
      361 tttgtgatat caaattgata tcaaaacaaa tattatggaa aaactcacaa agccagcatc
      421 cggctggtgg tttctgttgc taggcttcct catgattgtg ttggcggtaa tcagtttccg
      481 gatggccaac gaggacggga tggtttggtt gcatgtacct ggggttgcgt tcgctattac
      541 gtttatcctg gtagcgattg gttttattgc cattgatcca aacagcagcc gggtgcttac
      601 tttatttggc aagtatgtgg gaacggtaaa ggaaaatgga ttttattggg taaatccttt
      661 ttataccaaa aagaagatca gtcttcgggc caacaacctc gacaccaagc cgataaaggt
      721 gaacgataag catggcaacc cgataatgat tggtgccgtg attgtatgga aagtggagga
      781 tgcgtacaag gcagcttttg aagtagacaa ctaccagagc ttcgtagaaa cacaaagcga
      841 ggctgccatc aggaagttgg cgggcactta tgcctacgac aactttgagc acgaaacaga
      901 agagattact ctgcgaagca gtgctgctga agtaagtgaa aaactggagc atgaagtgag
      961 tgagcgcctg gcgattgctg gtatccgcat catagaaaca cgcctcagcc atttggccta
     1021 tgccactgaa attgccggtg ctatgttgca gcgtcagcag gcgaccgcta ttgtagcggc
     1081 ccgttcaaaa attgtggaag gcgctgtagg catggtggag atggcattgg agcaattgtc
     1141 ggcaaaagat gtagtgcatt tggatgagga gcgaaaggct gccatggtaa gcaacctgat
     1201 ggtggtactg tgcagtgaga gaagtgctca gccggtattg aacacaggaa gcctttatca
     1261 ataagccgca caaagttgtt tcaatacagt agcctattca tcagctaggt gaaggcaaat
     1321 tgaagttgtt ggcaataacc aggtagctaa cccatgccga aagaagcaaa gaaaacattt
     1381 gtactgcgcc ttgatgcggc gacctaccag ctactcgaaa aatgggcggc tgatgaattt
     1441 cgcagcatca acgggcagct tgaatacatt attgataagg cattgaagga ggctggcaga
     1501 agcaaacggg cagacatatc tgccaaaggg aagtcgaaat aatctgttgc catctcatga
     1561 gcctttttgt ccatgccatt atctttaatg aaaccgatat cgatgatgcg gaaaacattt
     1621 atggctgccg cctgcctgct tttgtgcgat agtttggtgg cacaaccaga catagaaaag
     1681 caactgcaaa cgcttttcat aatggcagaa aacaattccg taatagaatt gccggaaggc
     1741 aatttcaagc tcgaccagag tttgtggctg gatgacaaga agaacgtcat catccgtggc
     1801 aaaggcatgg ataaaaccat cctcagtttt gcaggccaga taagcggcgc tgagggcatc
     1861 aaagtcacca attgttccgg catccgtatt gaacatctca ctgtacagga tacaaagggc
     1921 gatggcatca aaacgcagga agtagatggg atttcatttg taaaggtgaa agcggaatgg
     1981 acaaggggcg cccatgagaa aaatggcggc tatgggttgt acccggtgca atgcaaaaat
     2041 gtgctcatcg atagctgcgt ggcccgtggc gccagcgatg ccggcattta cgtaggacaa
     2101 agcagccaca tcattgttcg caacagcctc gccattgaaa atgttgctgg cattgaaatt
     2161 gaaaattcgc tgtatgccga tgtgtacaac aatgaggcca ccaacaatac cggcggtatc
     2221 ctggtttttg atttaccaga ccttatccag aaaaagggtg gtcatgtaag ggtgttcaac
     2281 aaccgggtgc atgaaaacaa ccatgtgaac tttgctccca aaggaaacat agtggggaaa
     2341 gtgccacagg gtaccggtgt gatgatcatg gccaccaatc aagtggagat ttttgaaaac
     2401 cagatcagga acaacaagac ggtgggcacc gctgtagtga gttattacat cagtgaaaac
     2461 ccgatcaaag acagcgttta ctatccatat cccagcctgg tgtatataca cgacaacgtg
     2521 tatgagcgcc ggcacgaaag ggcaaccagc aaaggccgga tggggcaact gtatcgcttt
     2581 aagctgcgct ttggaaagaa tgttccacac attgtatacg atggtatagt agacaaaagc
     2641 aatcccggca aattgtgcat tcagaataat aaagaagaga cctttgccaa tattgatgcg
     2701 gaaaataatt ttaagaatat cagccgcgat gtatcgaagc atcgctgtag tttgcccgcc
     2761 ctggagcctg cagtggtaaa agagaaatag caatgaagcg agtttgtgta ttggtaatgt
     2821 tcgcagctgt ggcagccggc attgcctctt tcagaaaata cgaggacgat gcctttgaat
     2881 ttcacaagaa cctcagcgag tggggctttt tcaagggcga tatcaaaaag ctggaacctg
     2941 ccaagggagt ggttccttac gacttgaata cccctttgtt cagcgattac gcggtgaagg
     3001 atcgtttcat tcgcctgccg aaaggggaa
//
LOCUS       DATIQF010000619         2134 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_283467,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000619 DATIQF010000000
VERSION     DATIQF010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2134
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283467"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2087
                     /locus_tag="VLL95_10555"
     CDS             <1..2087
                     /locus_tag="VLL95_10555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39344.1"
                     /translation="ASNEGGCVHSDHHALWINPGATNELWLGTDGGVYLSLDRGATWS
                     FKGNLPVGQFYHVAVDNAEPYRIYGGLQDNGSWVAPSAAPGGVSNAVWQDIYGGDGFW
                     VIPDLKEKNICYAEYQGGNMARVNLTTGKSVAIQPQKSQGEEDLRWNWNTPLHVGPVS
                     KALYTGSQYVYRSTDQGRNWVRISPDLTTNDKAKQKQEESGGLSADNTSAENHCTVFT
                     ISESPLDSNLIWVGTDDGNLQYSTDGGKNWVNVAANYAAAGIPKQTWVSSIEPSRFDK
                     NVVYATFDNHMYGDHKTYVARSDDMGKNWTLLKGGEEFEGFAHKIKEDLVNKDLLFLG
                     TEMGLYASVNGGKEWFRMKNNIPWYALVRDITIHPTKHDLVLGTHGRGIIVVDDISPI
                     RNMSADAASRDVYLLKPADMVLRDGQFGGGGFPGTGGWNGGNPPSITPIKYYLKDRVM
                     SGDVKVDILDKDGKLVQSIPATKRKGINMVTWNLRMTPPKVAEGGVKLDFGAFSAPMV
                     MPGDYTVKLTVGDKSYTQPLKVVHDEKGEMTLEERKKQYDAAMQLYRMQEDLARVVDT
                     INKAQAMLKENMDKLQNKKSKALAQEYYNKLEEQRGKLLATKNKSVFADEKRLKEEIS
                     EVYTAVAGNEAAPSNLQLQRISNLEAEVKKQDQNTQTIIQQFNGKVMDAFKKENIYIG
                     PKGKVSLAGTSG"
BASE COUNT          607 a          514 c          584 g          429 t
ORIGIN      
        1 aagccagcaa cgaagggggc tgtgtgcaca gcgatcacca tgccttatgg atcaaccccg
       61 gtgccaccaa cgaactctgg ttgggtacag acggtggggt atacctgagc ctcgatcgtg
      121 gtgccacctg gtcgttcaaa ggcaacctgc ctgttggcca gttctaccat gtggcggttg
      181 acaatgcaga gccctaccgc atttacggtg gcttgcagga caacggcagt tgggtagccc
      241 ccagcgcagc gcctggtggt gtcagcaatg cagtttggca agacatctat ggcggtgatg
      301 gtttttgggt aatacctgat ttgaaagaaa agaacatctg ctacgcagaa taccagggcg
      361 gcaatatggc ccgtgtcaac cttacgacag gtaaatcggt agccattcag ccacagaaga
      421 gccagggtga ggaagacctc cgctggaact ggaatacgcc tttgcatgtt ggaccggtat
      481 ccaaagcatt gtacactggt tcgcaatacg tgtaccgcag caccgaccag ggccgcaact
      541 gggtgcgcat ttctcccgac ctcaccacca acgacaaggc caaacaaaag caagaggaga
      601 gtggtggcct gagcgccgac aatacttctg ctgaaaacca ttgcaccgtg ttcaccatct
      661 ccgaaagccc attggattcc aatcttattt gggtaggcac cgatgatggc aatttgcaat
      721 acagcaccga cggaggaaag aattgggtga atgtagccgc taattatgct gctgcgggca
      781 ttccaaagca aacctgggta agcagcatcg aacccagccg tttcgacaag aatgtggtgt
      841 atgccacttt cgacaatcac atgtatggcg atcacaaaac ctatgtggcc cgcagcgacg
      901 acatgggcaa gaactggacc ttgctgaaag gtggagaaga gtttgaagga tttgcacaca
      961 agatcaaaga agacctggta aacaaggacc tgcttttcct cggaacagaa atgggtttgt
     1021 acgccagtgt taatggcggc aaagagtggt tccgcatgaa gaacaatatt ccctggtatg
     1081 cactcgtacg ggatattacc atacacccca ccaagcacga tttggtattg ggtacccacg
     1141 gccgcggcat cattgtggtg gacgacatca gtcccatccg caatatgagc gctgatgcag
     1201 catccaggga tgtatacctc ctgaaacctg cagacatggt gctgcgcgac ggtcagttcg
     1261 gaggcggtgg attcccgggt accggcggtt ggaatggcgg caatccgccc agcattacac
     1321 ctatcaagta ctatctgaaa gaccgtgtaa tgtcgggtga tgtgaaagtg gacatcctcg
     1381 acaaggatgg aaagctcgtt caatctattc ccgctaccaa gcgcaaaggc atcaacatgg
     1441 tgacatggaa tttgcgaatg actcctccca aggtggctga aggtggcgtg aagttggatt
     1501 tcggtgcttt ttccgcaccc atggtaatgc ccggcgatta cactgttaag ctgacggtgg
     1561 gggataagtc gtacacgcag ccactgaaag tagtgcacga tgagaaagga gagatgacac
     1621 tggaagagcg taaaaagcag tacgacgccg ccatgcaatt gtatcgcatg caggaagatc
     1681 ttgccagggt ggtggacacc atcaacaaag cgcaagccat gctgaaagaa aacatggaca
     1741 aactgcagaa caagaaaagc aaggcgctgg cgcaggagta ctacaacaag ttggaagagc
     1801 agcggggtaa attgctggcc accaaaaaca aaagtgtttt cgctgatgaa aaacgtttga
     1861 aggaagagat cagcgaagtg tacaccgcgg tggctggaaa cgaagccgca cccagcaacc
     1921 tgcaactgca gcgcatttca aacctggaag cagaagtgaa aaaacaggat cagaatacac
     1981 aaaccatcat tcaacagttt aatggcaaag tgatggatgc gttcaagaaa gaaaatatct
     2041 acatcggtcc caaaggcaag gttagccttg ccggcaccag cggataaaat tgatcgcaaa
     2101 tcaaaatagc ccggcttatt tggccgggct tttt
//
LOCUS       DATIQF010000620         2456 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_222941,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000620 DATIQF010000000
VERSION     DATIQF010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2456
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222941"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..494)
                     /locus_tag="VLL95_10560"
     CDS             complement(<1..494)
                     /locus_tag="VLL95_10560"
                     /inference="COORDINATES: protein motif:HMM:NF012951.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase family protein"
                     /protein_id="HSR39345.1"
                     /translation="MSKRVRVRFAPSPTGGLHLGGVRTVLYNYLFAKQHGGDFVLRIE
                     DTDQTRFVPGAEEYILDCLRWCGLEPDESVEKPGVYGPYRQSERKEIYQQYAHRLVEQ
                     GDAYYAFDTPDELELMREKFKTPENPSPTYNQQIRKHMRNSLTMELEAARELIAEGTP
                     YVVR"
     gene            complement(546..1760)
                     /locus_tag="VLL95_10565"
     CDS             complement(546..1760)
                     /locus_tag="VLL95_10565"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HSR39346.1"
                     /translation="MNTEQVLIILCGIVVISYLFSILSRKLRLPSVLLLLFLGIGARY
                     VGDQYQYKIDLPRVVVEGLGVVGLIMIVLEAGLDLKLERKKIRLIRSSFLSAFVILIF
                     SVTLITFLLRWWLGEPWINSIVYALPLSIISSAIVIPSLHHLSAEKKEFLVYEASFSD
                     IIGIILFNYFAAGEIMTWQSLGIFTGSIVVSVILSISFSVLLFLLMANTKLNIRFFLV
                     FSLLILLYAAGKLLHLPSLLIILVFGLMIRNWEHVKLPPSLGTYSSHKVNEIQELLHA
                     ITAESSFLIRTFFFILFGYTIQLNAILDKDIATIGGLIVGALFLVRLVYLSLFLRANI
                     FPELFYMPRGLITIVLFYKIPDALKLSSFNESILAFVILSTSLLMAIGGMFYRQKPEA
                     MVEELLFDREEH"
     gene            complement(1839..>2456)
                     /locus_tag="VLL95_10570"
     CDS             complement(1839..>2456)
                     /locus_tag="VLL95_10570"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HSR39347.1"
                     /translation="DESDEVLETGGGISRIVVNVHHFAGQIIEAVKQNKGWGAEVLIS
                     DESDEVLETGGGIQKAIPLFGNEKQLLVMNADILTDMDLAAFIAAHNTSGAAATLAVS
                     NRPSSRCFLFDAHNRLCGWRNKNTGETKLPVAADQLVEKSFSGIHLIQESIFRHMPFE
                     GKFSMVDVYLAMCGNHRIECFDHSGSKFIDIGTMEKLEQAGRLFQ"
BASE COUNT          671 a          586 c          627 g          572 t
ORIGIN      
        1 atgcgtacca catagggagt gccttctgct atcagttccc tcgctgcctc cagttccatg
       61 gtcagcgaat tgcgcatgtg cttacggatt tgctggttgt aagtgggcga aggattttca
      121 ggcgtcttga atttttcacg catcagttcc agttcatccg gcgtgtcgaa tgcataataa
      181 gcatcgccct gctctaccag tcggtgggca tattgctggt aaatttcctt gcgttcgctt
      241 tggcgatagg ggccgtaaac gccgggcttt tccacgcttt catcgggctc gagcccgcac
      301 catctgaggc aatccaaaat gtattcttcc gcccccggta caaagcgggt ttggtcggta
      361 tcttctatgc gcagcacaaa atcgccgcca tgctgtttgg caaacaggta attgtataaa
      421 accgtacgaa caccacccag gtgcaaaccg ccggtgggtg agggggcaaa acgaacacga
      481 actcttttac tcataggccg caaagataat gcggatagca ggagcaagcg gcccgccttt
      541 ggacattagt gctcttcgcg gtcgaagagt agttcctcca ccatggcttc tggtttttgg
      601 cggtaaaaca taccgccaat ggccattagg agactcgtgg acagaatcac aaaggcaaga
      661 atgctctcgt tgaaggagga taacttcaat gcgtccggaa tcttataaaa caatacgatg
      721 gtgatgaggc ccctgggcat gtaaaacaat tcaggaaaaa tgtttgctcg taggaaaagg
      781 gaaaggtaaa cgaggcgaac gaggaaaagc gcacccacga tgaggccgcc aatggtggcg
      841 atgtctttgt cgagaatggc gttgagctga atggtgtaac caaaaaggat gaagaaaaaa
      901 gtacggatga gaaaagaaga ttcagccgtg atggcatgca gcagttcttg tatttcattc
      961 actttgtgcg atgaataggt gccgagagag ggcggcagtt ttacatgttc ccagttcctg
     1021 atcatcaacc cgaaaaccag gatgatgagg agcgagggca aatgcagcaa ttttccagct
     1081 gcatagagca ggatgagcaa ggagaaaacc aggaaaaagc ggatgttcag tttggtgttg
     1141 gccatcaaca ggaaaagcaa caccgaaaaa gagatagaaa ggataactga aacgacaatg
     1201 ctgcccgtaa atatgcccag cgactgccag gtcatgatct cgccggccgc gaaatagttg
     1261 aacaatatga taccgatgat gtcgctgaag gaagcttcat aaacaaggaa ttcctttttc
     1321 tctgccgaaa ggtggtgcag gctggggatg acaatggccg aactgatgat ggacaatggc
     1381 aaggcataca cgatgctgtt gatccagggt tcgcccagcc accagcgcag caaaaaggtg
     1441 atcagcgtaa cggagaatat caaaatgacg aaagcggaaa gaaatgagct cctgatgagc
     1501 cgtatttttt ttcgttccag tttcagatca agtccggctt ccagcacaat catgatgaga
     1561 ccgaccacac cgagaccttc caccactacg cggggcaggt caattttgta ttgatactga
     1621 tcacccacat agcgggcacc gattcccaaa aacaacagta acaaaactga aggcaagcgc
     1681 agtttccggc tcaggatgga aaacaggtag gagatgacaa caatgccaca gagtatgatc
     1741 aggacttgtt ctgtattcat aggtagccgt gtgattgggg aacactaaag atagtggtct
     1801 gacgataagg gcaatagcca aaaagcagat tgttgaatct actgaaaaag cctgccggct
     1861 tgttccagtt tttccatagt cccgatgtcg atgaacttac tgccgctgtg atcaaagcat
     1921 tcaatgcgat gattcccgca catggccagg taaacatcca ccatagaaaa tttgccttcg
     1981 aaaggcatat gcctgaaaat gctttcttga ataagatgga tcccgctgaa tgatttttcc
     2041 accagttgat cggctgctac cggcagtttg gtttcacccg tgtttttgtt gcgccagccg
     2101 cacagcctgt tgtgcgcatc aaacaggaaa cagcgtgagg acggcctgtt gcttaccgcc
     2161 agggtggctg ccgcacccga tgtattgtgt gccgcgatga atgcagccag gtccatatcg
     2221 gtaagaatgt cggcgttcat caccagcaac tgcttttcat tgccaaacaa tggaatggct
     2281 ttttgaatgc cgccgccggt ttccagcacc tcatcacttt catcgctgat cagtacttcg
     2341 gcaccccatc ctttgttctg tttcacagcc tcgatgatct ggcctgcaaa atgatgcaca
     2401 ttcaccacga tgcgactaat gccgccgcct gtttccagca cctcatcact ttcatc
//
LOCUS       DATIQF010000621         1649 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_70800, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000621 DATIQF010000000
VERSION     DATIQF010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1649
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70800"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..265
                     /locus_tag="VLL95_10575"
     CDS             <1..265
                     /locus_tag="VLL95_10575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39348.1"
                     /translation="WANLHAPEFNGQPFSHTFIYGSYDGKVTFYEPMITKAFIESKVA
                     THQNFVPATLFDPDEAWYPTSYNIWYDPAKDRYYISLGGFTWR"
     gene            435..1124
                     /locus_tag="VLL95_10580"
     CDS             435..1124
                     /locus_tag="VLL95_10580"
                     /inference="COORDINATES: protein motif:HMM:NF001368.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HSR39349.1"
                     /translation="MDFGKEFQQYAVKHRGISSNTLDGYIKHNVTNLTPNIIEERPMN
                     VAVMDVYSRLMMDRIIFLGYPIMDEVANIVTAQLLFLESTDRTRDIQMYINSPGGSVY
                     AGLGMYDTMQFVTPDIATICTGMAASMGAVLMAAGAHGKRTALKHSRIMIHQPSGGAM
                     GQATDIEITVNEVKKLKKELYDILAYHTGQTAEQVAIDSDRDKWMTATEAKEYGLVDE
                     VLFINPRKEKK"
     gene            1259..>1649
                     /locus_tag="VLL95_10585"
     CDS             1259..>1649
                     /locus_tag="VLL95_10585"
                     /inference="COORDINATES: protein motif:HMM:NF012783.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HSR39350.1"
                     /translation="MNQHNFRNKPFRFDEEEPEVPATPSIEMPMEKMMSGWQFDKKFI
                     EQRKVFLWGVVDDKSAKDITSRLLYLDAIDPGKEITFYINSPGGLVTAGMVIYDTMQL
                     ISSPVSTVCMGMAASMGSILLSGGKKGK"
BASE COUNT          448 a          461 c          403 g          337 t
ORIGIN      
        1 ctgggcaaat ctgcacgcac ccgagttcaa cgggcaaccc ttcagtcaca cattcatcta
       61 cggcagctac gatggcaagg tcacctttta cgaacccatg atcaccaaag ccttcatcga
      121 aagcaaggtg gccacccacc aaaactttgt accggccacc ctgttcgatc ctgatgaggc
      181 ctggtatcct acttcgtaca acatatggta tgatcctgcc aaagacaggt attacatctc
      241 actgggtggt tttacctggc gttgatgaca agcattcctg cctaaaagcc cgacttaaag
      301 aaagccgggc tttttttgtt ccgccaaaat gtcctgaaat tttccccgca cagtatttga
      361 aagtcatttc ctgttatatt gctgctcccg cttgcagcgg aacagcataa ttagctcacc
      421 agcaaatgat tgatatggat tttggaaaag agtttcagca atatgccgta aaacaccgcg
      481 gcatcagcag caatacgctg gatggataca tcaaacacaa tgtaaccaac cttacgccca
      541 acattattga agagcgcccc atgaacgtcg ccgtgatgga tgtgtacagc cgcctgatga
      601 tggaccgcat catcttcctc ggctatccca tcatggatga ggtggccaat attgtaacgg
      661 cacagttgct gtttttggaa agcaccgatc gtacccgtga catccagatg tacatcaaca
      721 gccccggcgg cagcgtgtat gccggcctcg gcatgtacga caccatgcag ttcgttaccc
      781 ccgacatcgc caccatctgc accggtatgg ccgccagcat gggagccgtg ctcatggcag
      841 ccggcgccca cggcaagcgc actgcgctca agcacagccg catcatgatc caccagccca
      901 gcggtggtgc catgggccag gctaccgata ttgagatcac agtgaatgaa gtgaagaagc
      961 tgaagaagga actgtacgac atactggcat accataccgg ccagactgcc gagcaggtag
     1021 ccatcgacag cgaccgcgac aagtggatga ccgccaccga agccaaggaa tacggcctgg
     1081 tggatgaagt gttgttcatc aaccccagga aggagaagaa ataaaccccc aacccacatc
     1141 gttgcctgcc tgacggcagg cgggtgtcac tcacttttgg ctgcagtaca tagcccaacc
     1201 aaaaacctgc ctgacggcag gcaggcaaaa aacaaaaaca acaaatcgca aacagtttat
     1261 gaaccagcat aatttccgca acaagccttt ccgcttcgac gaggaagagc ccgaagtacc
     1321 cgccacccct tccattgaaa tgccgatgga gaaaatgatg agtggctggc agttcgataa
     1381 aaaattcatt gagcaacgca aggtgtttct gtggggcgta gtagacgaca aaagcgccaa
     1441 agacatcacc agtcgcctgc tttacctcga tgccattgat ccgggcaagg agatcacttt
     1501 ttacatcaac agccctggtg gtttggtgac ggctggtatg gtcatttacg ataccatgca
     1561 actcatcagc agcccggtaa gcaccgtgtg catgggtatg gccgccagca tgggcagcat
     1621 cctgctgagc gggggcaaaa agggcaagc
//
LOCUS       DATIQF010000622         7131 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_299011,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000622 DATIQF010000000
VERSION     DATIQF010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7131
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299011"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            128..340
                     /locus_tag="VLL95_10590"
     CDS             128..340
                     /locus_tag="VLL95_10590"
                     /inference="COORDINATES: protein motif:HMM:NF020376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIRAN domain-containing protein"
                     /protein_id="HSR39351.1"
                     /translation="MEMKREPANEYDNLAIALYFDKHKIGYIPRDKNEVIARLMDGGK
                     AFFASIQAKEWAGKWLRIEIKVYLRD"
     gene            394..855
                     /locus_tag="VLL95_10595"
     CDS             394..855
                     /locus_tag="VLL95_10595"
                     /inference="COORDINATES: protein motif:HMM:NF019238.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1569 domain-containing protein"
                     /protein_id="HSR39352.1"
                     /translation="MPLPNIFDKQVSDHLVSRINGISSDSKPIWGTMNAGQMLAHCNV
                     TYRYVYEPEQFKPTPPIFKLILKLFVKKTVVNEKPYKQGSPTGPDFKVTPDQNFEAEK
                     EKLIAFLQKTQALGATHFEGKASHSFGALTATEWNNMFYKHLDHHLRQFGC"
     gene            870..1709
                     /locus_tag="VLL95_10600"
     CDS             870..1709
                     /locus_tag="VLL95_10600"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSR39353.1"
                     /translation="MKHPIYPCLWFNNQALEAAFWYTEVFGNGKVTETNPMVTMFELF
                     GSKIMALNGGPAFSPNPSISFYIDCASESEVEHYYNQLMEGGSALMPLGSYPWSPKYG
                     WLQDKYGTNWQFFVGQSPVATTQLSPQLMFTQAQAGKAKQAIEFYTSLFPGSKVHAMV
                     HYEPDDGDAVENIKHASFSLGPTLFKAMDSSHAHQFTFNEGISLVVECDTQGEIDKYW
                     NALTQNGEEQMCGWLKDQFGVSWQIVPAILGDLMNDRKKSQKVAAAFMQMKKMDIKKL
                     LDA"
     gene            1706..2371
                     /locus_tag="VLL95_10605"
     CDS             1706..2371
                     /locus_tag="VLL95_10605"
                     /inference="COORDINATES: protein motif:HMM:NF013972.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008289 - lipid binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="START domain-containing protein"
                     /protein_id="HSR39354.1"
                     /translation="MRRLKPVVRLLFGWLAFFLLLQLPVAAQENWTLRKNDKGIQVYS
                     RKTDSFRINELRVTTVMQAKLSQLVAAITDIQEHEKWVYKALNTKLLKRNSATDLFYY
                     TEVDAPWPFDNRDVVMRMLVEQDAKTKVVTIHTLNVDNVYPFQKDIVRILISRGKWSI
                     MPVSTNQLQIEYRIQVDPGTGVPAWLINFFATNGPYETFLHLREHIKLPKYAEARLDY
                     LVN"
     gene            2591..4489
                     /gene="rpsA"
                     /locus_tag="VLL95_10610"
     CDS             2591..4489
                     /gene="rpsA"
                     /locus_tag="VLL95_10610"
                     /inference="COORDINATES: protein motif:HMM:NF004953.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HSR39355.1"
                     /translation="MKNLNADAQENAGAASEAVAEPTATTNVPVEAPVAETVATAHDD
                     FDWSIDKRNVATYNNDEREKYDKVYDATFRTFNDGELVTGVVVGMTKTDAVINIGFKS
                     DGLISLNEFRDAPVSVGDEVEIMVVEKEDRNGHLNLSRRQARISRAWERIVDAHKTGE
                     VVTGTVTSKTKGGLIVDVFGMETFLPGSQIDVKPVTDYDQFVGKTMEFKVVKVNEAIK
                     NAVVSHKALIESDIEAQRAEIIAKLEKGQVLEGTIKNITDFGAFMDLGGLDGLLYITD
                     ISWGRINHPSEVLKLDQKLNVVVLDFDDDKKRISLGLKQLTPHPWDVLPENVQEGSVV
                     KGKVVNIEDYGAFLEIMPGVEGLVHVSEITWANTPVNAKEFFQLGNEHEAKIVTLDKD
                     NRKMSLSIKQLTEDPWSTIEDKYPVDSRHTGVVKNITPYGVFVELAPGIGGMIHISDL
                     SWLKRLNHPSEYTKVGENIDIIILNIDKDGRKLQLGHKQLEEDPWNSLGETFPVGSIH
                     EGTVIKKDDKGAVVSLPYGLEGFAPARHLGKEDGTTIAADETNQFVVIEFDRNEKRIV
                     LSHARIWERAKAEEIEAEKKEKKAEAEKTQKAVKTIQSKVEKATLGDLGVLADLKKKL
                     ENGEGKEG"
     gene            4601..4882
                     /locus_tag="VLL95_10615"
     CDS             4601..4882
                     /locus_tag="VLL95_10615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39356.1"
                     /translation="MPKDVFTSEEEKQESHSRRHHHRDSEARMEDEIRAFLKDETRMA
                     REVITLRKELNRLHFKVKTYQQANKTMQTMYGVISLILLAIITYKVFRP"
     gene            complement(4896..5561)
                     /gene="hxpB"
                     /locus_tag="VLL95_10620"
     CDS             complement(4896..5561)
                     /gene="hxpB"
                     /locus_tag="VLL95_10620"
                     /EC_number="3.1.3.22"
                     /EC_number="3.1.3.50"
                     /EC_number="3.1.3.68"
                     /inference="COORDINATES: protein motif:HMM:NF008087.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HSR39357.1"
                     /translation="MSITHYNTVIFDMDGLLIDSEPLWEEAGGELLRKYGCKLTHEMY
                     GQTTGLRTREWLEYWFNYFQLSHTNIEAAEFEIIEAVIGKVKLKGKSLPGVQYIIEYF
                     RRKQFRIGLATSSPLRLAEIVVELLDIHNQLDTLTSAEFLPFGKPHPQVYINCASALQ
                     ADPLRCICFEDSFNGMIAAKAAKMKCIVVPSAAQLQSAKWGAADLKISSLQNFNDLLL
                     ARL"
     gene            5694..6464
                     /locus_tag="VLL95_10625"
     CDS             5694..6464
                     /locus_tag="VLL95_10625"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSR39358.1"
                     /translation="MPSIGETIRDSKLVKGPVYSLVGLASWPGLSLVNKTEIRGMEHL
                     ENLPAQNVLFVSNHQTYFADVITFLHIFCARNWGRINKLGLPFYLLWPFTRVKFIAAE
                     ETMKNNWLSRLFALAGAISVKRTWRAEGKEVKRTRDESDTQKIDEALQKNWVITFPQG
                     TTKPFAPGRKGTAHIIKNNRPVVVPVVINGFWRAFDKKGLRFKKKGSTLSITFKEPLQ
                     LDYDAPAEDILNKIMDAIEQSKDFMMRGKHHLMNMLDK"
     gene            complement(6536..>7131)
                     /locus_tag="VLL95_10630"
     CDS             complement(6536..>7131)
                     /locus_tag="VLL95_10630"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HSR39359.1"
                     /translation="SIAVFGPTSPKQNCPQQTIIEPVTVYGISKYAGEFWCNYYFQRY
                     GVDVRSIRYPGLISYKSAPGGGTTDYAVEIFHEALEAKQYECFLREDTYLPMMYMPDA
                     IRATIELMEAPAAKIGVRHSYNLSGMSFSPKEIAEEIGKHIPGFTISYKPDYRQEIAD
                     GWPQSIDDSVAREDWGWKEEFDLAAMTKDMLVNLRAS"
BASE COUNT         1974 a         1746 c         1735 g         1676 t
ORIGIN      
        1 attaagcaaa ggactgggta acctgcaggt aatgcagcag gatatcctgg tgttgcagtg
       61 ccaggtagct ggtacctctt tccgaaacct gcaggaagtg gagccgtaat tggtcaacga
      121 gatcaggatg gaaatgaaaa gggagccggc caacgagtac gataaccttg ccattgcact
      181 ttacttcgac aagcataaga ttggttatat ccctcgtgac aaaaatgaag tgattgcccg
      241 gctgatggac ggcggcaaag cattcttcgc cagcatccag gccaaggaat gggccggaaa
      301 atggttgcgc atagaaatca aggtttattt gcgggattga ctaacttgaa tcaagattat
      361 tggttcaatt tgccaaccat caataagacc gcaatgccac ttcccaacat tttcgacaag
      421 caagtgagtg accacttggt tagccgcatc aatggtatat cctcggatag caagcccatt
      481 tggggcacta tgaatgccgg ccaaatgctg gcgcattgca atgtcaccta ccggtatgtg
      541 tacgagccgg agcagttcaa acccacgcca ccaatcttca agctgatact gaaactgttt
      601 gtgaagaaga cagtggtgaa cgaaaaacca tacaaacaag gaagtccaac cggtcctgat
      661 ttcaaagtga ctcccgatca gaattttgaa gccgaaaaag aaaaattgat tgcctttttg
      721 cagaaaacgc aagccttggg tgccacccat tttgaaggca aagcatcaca ctcctttggc
      781 gcactgactg ctaccgaatg gaacaacatg ttttacaaac acctcgacca tcaccttcgc
      841 cagttcggtt gttgaatagt attatccgca tgaaacatcc catctacccc tgtctgtggt
      901 tcaacaacca ggcgctggaa gcagctttct ggtataccga agtgtttggc aacggcaaag
      961 taaccgagac caaccccatg gtgaccatgt ttgaactgtt tggttcaaag atcatggcgc
     1021 tgaatggcgg gcctgctttt tctcccaacc cttccatatc cttttacatt gactgtgctt
     1081 ccgaatctga agtggagcat tactataacc agttgatgga aggaggaagc gccctgatgc
     1141 cactgggctc ctatccctgg agccctaagt acggctggct gcaagacaaa tacggaacca
     1201 actggcagtt ttttgtggga caatcccctg ttgccactac ccaattgtca ccacaactca
     1261 tgttcaccca ggcgcaggcc ggcaaggcca aacaagccat cgaattttat acttctctat
     1321 ttcccggaag caaggtgcat gcaatggttc attacgaacc agatgacggg gacgctgttg
     1381 aaaatatcaa gcacgcctcc ttcagtctgg gtcctaccct tttcaaagcc atggacagtt
     1441 cgcatgcaca ccagttcact ttcaatgaag gcatttcgct ggtagtagaa tgtgacacgc
     1501 agggagaaat cgacaagtac tggaatgcgt tgacccaaaa tggcgaagag caaatgtgtg
     1561 gctggctcaa agaccagttt ggcgtttcgt ggcagattgt acctgccatt ttgggcgacc
     1621 tgatgaatga tcgcaaaaag agccagaaag tggcagcggc attcatgcag atgaagaaaa
     1681 tggatatcaa aaaactgttg gatgcatgag acgattgaaa cctgtggttc gtttgctatt
     1741 tggatggttg gcctttttcc tgctcctgca attgcctgtg gcagcccagg aaaactggac
     1801 tttgagaaag aatgataaag gcatccaggt gtattcaaga aagaccgaca gtttccgcat
     1861 caatgaattg cgggtaacca cggtaatgca ggcaaagttg tctcaattgg tagctgctat
     1921 taccgacata caggagcatg aaaaatgggt atacaaagca ctcaacacca aactgctcaa
     1981 acgaaatagt gcgaccgatc ttttctatta caccgaagtg gatgccccct ggccgtttga
     2041 caacagggat gtggtcatgc ggatgctggt ggagcaggat gctaagacca aagtcgtgac
     2101 catccataca ctgaacgtcg acaatgtcta cccctttcaa aaagacattg tccgcatttt
     2161 gatatccagg ggcaaatggt caatcatgcc tgtttcgacc aaccagcttc aaattgagta
     2221 tcgcatacag gtagaccccg gcaccggcgt tccagcctgg ctcatcaact tttttgccac
     2281 caacggaccg tacgaaactt tcctgcattt gagggagcac ataaagctgc cgaaatacgc
     2341 cgaagcccgc ctcgactacc tggtcaattg aagattaaca attcctggca gatggaatca
     2401 tagcatttct ttggcataat tgattgcttt tcaattcctt agccacactt ttagtcctgg
     2461 ttttggtaac ccagccagat ggccaaaatc caggctgttt ttttgcctgg aatgcttgcc
     2521 gcacaaggac tttcccctac ttttgcaacc ccgaataata aaccatcggg attttatcat
     2581 gaatttcttt ttgaaaaacc taaacgcaga tgcacaggag aacgctggcg ccgcttcaga
     2641 agctgtggcc gagcctactg cgacaacaaa tgtacctgtg gaggcccccg tggctgaaac
     2701 cgttgccact gctcacgatg atttcgactg gagcattgac aagcgcaacg tagctaccta
     2761 caacaatgac gaaagggaga agtacgacaa agtgtacgac gccaccttcc gcactttcaa
     2821 cgacggcgaa ctggttaccg gcgtggtagt aggtatgacc aaaactgatg ctgtaatcaa
     2881 catcggtttc aagagtgacg gcctcatcag cctgaacgaa ttccgcgacg ctcctgtttc
     2941 tgtgggcgat gaagtggaaa ttatggtggt tgaaaaagaa gaccgcaacg gtcatctgaa
     3001 cctcagccgc cgtcaggccc gcatcagccg tgcctgggaa cgtattgtgg acgctcacaa
     3061 aaccggcgaa gtggttactg gtactgttac cagcaaaacc aaaggcggcc tgatcgtgga
     3121 cgtatttggc atggagacct tcctgcctgg ttcacaaatc gacgtgaagc ctgtaaccga
     3181 ctacgatcag tttgtaggaa agaccatgga attcaaggtg gtgaaggtga acgaagccat
     3241 caagaatgcc gtagtaagcc acaaagcact catcgaaagc gacatcgaag cacagcgtgc
     3301 cgaaatcatt gccaagctcg aaaagggcca ggtattggaa ggtactatca agaatatcac
     3361 cgacttcggc gccttcatgg acctcggtgg tctcgacggt ttgctgtaca tcaccgatat
     3421 cagctggggc cgcatcaacc acccttcaga ggtgttgaag ctggaccaga agctgaacgt
     3481 ggtagtactc gacttcgacg acgacaagaa gcgcatcagc ctcggcctga agcaactgac
     3541 tccacatcct tgggatgtgc tgcctgaaaa tgttcaggaa ggttcagtag taaaaggcaa
     3601 agtggtgaac atcgaagact acggtgcatt cctcgaaatc atgcctggtg ttgaaggcct
     3661 ggtacacgta agcgaaatca catgggccaa cactcctgtg aacgctaagg aattcttcca
     3721 gttgggcaac gagcacgaag ctaagattgt gactctcgac aaagacaacc gcaagatgag
     3781 cctcagcatc aagcaactga ctgaagatcc ctggagcacc atcgaagaca aataccctgt
     3841 tgacagccgt cacactggcg tggtgaagaa catcactcct tatggtgtgt ttgttgagct
     3901 ggctcccggc attggcggta tgatccacat cagcgacctg agctggttga agcgtttgaa
     3961 ccaccccagt gagtacacca aggttggcga aaacatcgat atcatcatcc tgaacatcga
     4021 caaggatggc cgcaagttgc aactgggtca taagcagctg gaagaagatc cctggaacag
     4081 cctgggtgaa accttccctg ttggttctat ccacgaaggc actgtgatca agaaggacga
     4141 caaaggcgct gtagtaagcc tgccttacgg tctggaaggt tttgcacctg cccgtcacct
     4201 gggtaaggaa gacggcacta ccattgctgc cgatgaaacc aaccagttcg tggttatcga
     4261 gttcgatcgc aatgaaaagc gcatcgtact gagccatgcc cgcatctggg aacgtgctaa
     4321 agctgaagag atcgaagccg agaagaaaga gaagaaagcg gaagccgaga agactcagaa
     4381 agctgtgaag accatccaga gcaaggtaga aaaagcaacc ctgggcgacc tgggcgtgct
     4441 ggccgacctg aagaagaagc tggaaaacgg cgaaggcaaa gaaggttaat caccggattg
     4501 accttttcaa tacaaccgtc cccgtcatca tgatttgggg acggtttttt tattgaataa
     4561 tgcgcctccc ctacatttgg caactctaat gatttgaacc atgccaaaag acgtattcac
     4621 ttcggaagaa gaaaagcaag aaagtcattc tcgccgccat caccaccgcg attctgaagc
     4681 caggatggaa gatgagataa gagctttcct gaaggatgaa accaggatgg cccgggaagt
     4741 tataaccctg cggaaagaac tgaaccgctt gcacttcaaa gtgaagacct accagcaggc
     4801 gaacaaaacc atgcaaacca tgtatggtgt catttccctc atcctgctgg ccatcattac
     4861 ctacaaggtt tttcgtcctt agattttttg caggcctaca acctggccag cagcaagtca
     4921 ttgaaatttt gcagcgaaga gatcttgagg tcggctgccc cccacttggc actttgtaac
     4981 tgggctgccg agggcaccac gatgcatttc attttcgccg ccttggctgc aatcattccg
     5041 ttgaacgaat cttcaaagca aatacaacgc aggggatctg cctgcagcgc tgacgcacaa
     5101 ttgatgtaaa cctgtggatg aggctttcca aatggcagga actccgcact ggtaagcgtg
     5161 tccaactggt tgtgtatatc caacagctca accacaattt cagccagtcg caagggcgac
     5221 gaagtggcga ggccaatgcg aaactgcttt ctcctgaaat actcaatgat atactgtacg
     5281 ccgggaagtg atttgccttt tagcttcact ttgccaatca ctgcctcaat gatttcgaac
     5341 tcagcggctt cgatattggt atgactgagc tgaaaataat tgaaccaata ctccaaccat
     5401 tccctggtgc gcagtcccgt ggtttggcca tacatttcgt gggttagctt gcacccatat
     5461 ttccggagca gctcacctcc ggcctcctcc cacaatggct ctgaatcgat cagcaagcca
     5521 tccatatcaa atatgacagt attgtaatgt gtaatgctca taatcttttt ttcaacagaa
     5581 tagtcctttg cattttacca ggcgcaaatt tggccagaaa tcagatacca tatatttgtt
     5641 tgcccctacg tattgaattc aacgcagaaa gattgtaact tgaagtaatt gctatgccat
     5701 ctataggaga aaccattcga gactcgaaac tggtaaaagg tccggtttat tcgctggtag
     5761 gcctggcgag ctggccagga ctcagcctcg taaataagac ggagatcagg ggaatggaac
     5821 accttgaaaa cctgccggcg cagaacgtgc ttttcgtgag caatcaccaa acctattttg
     5881 ccgacgttat tacttttctg cacatttttt gtgcacggaa ttggggccgg atcaataaac
     5941 ttggtttacc cttttacctg ttgtggcctt ttaccagggt caaattcatt gccgcggaag
     6001 aaaccatgaa gaataactgg ctcagcaggt tgtttgccct ggcaggggcc atcagtgtaa
     6061 aaagaacctg gcgggccgaa ggcaaagagg tgaaaagaac ccgcgatgag agcgataccc
     6121 aaaaaattga cgaggccctg caaaagaatt gggtgattac ttttccgcag ggaaccacca
     6181 aaccctttgc tcccggccgc aaaggcacag cgcatatcat taagaacaac cgccccgttg
     6241 tggtacctgt tgtgatcaat ggtttctgga gggcattcga taagaaagga ctgcgattca
     6301 aaaagaaggg ctctaccctt tccattactt tcaaagagcc gttgcaactg gattatgatg
     6361 cgccggcaga ggacatcctg aataaaataa tggacgccat tgagcaaagc aaagatttca
     6421 tgatgcgagg caagcatcat ttgatgaata tgctggacaa ataaaaacag catccacaaa
     6481 aaaggaagac tcactttaag cgtcttccct ttttttatgc aaagaatgtc ttgatttacg
     6541 aggcacgcag gtttaccagc atgtcttttg tcatggcagc caggtcaaat tcttctttcc
     6601 atccccagtc ttcacgtgcc acgctgtcgt caatgctttg cggccagccg tctgctattt
     6661 cctgcctgta atcaggtttg tatgaaatgg taaagcccgg gatgtgtttc ccgatctctt
     6721 ccgctatttc ttttggagaa aaactcatgc cgctcaaatt gtagctgtgg cgtaccccaa
     6781 ttttggctgc cggggcctcc atcagctcaa tagtggcacg aatggcatcg ggcatataca
     6841 tcatgggcag gtaggtgtct tcccgcagga agcattcgta ttgttttgct tccagtgctt
     6901 cgtggaaaat ctcaaccgca tagtcggtgg taccaccgcc cggggcgctc ttgtagctga
     6961 tcaatcccgg gtagcgaatg ctgcgcacat ccacaccata ccgttggaag tagtaattgc
     7021 accaaaactc gccggcgtat ttactgatgc cgtaaacggt aacgggttca ataatggttt
     7081 gctgcgggca gttctgtttg ggagaagtag gcccaaacac ggcaatggag g
//
LOCUS       DATIQF010000623         1607 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_253199,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000623 DATIQF010000000
VERSION     DATIQF010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1607
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253199"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            178..>1607
                     /locus_tag="VLL95_10635"
     CDS             178..>1607
                     /locus_tag="VLL95_10635"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase, GntK/IdnK-type"
                     /protein_id="HSR39360.1"
                     /translation="MHPVYYITGVAGSGKTTVGRMLAAQLGLSFFDGDDFHSSANKAK
                     MASGIPLTDEDRQGWLQAIHAKALEAAASAGAVFACSALKQSYRDLLQQDLPVVHWVY
                     LKGSYDFILHRMQQRKDHFMPASLLRSQFETLEEPAAVLTIDIGQSPQAIIDQIVQHM
                     QPHSTFGIIGLGVMSKSLARNAAAKGIRLSVYNRHVPGKEEKVAEQLVATHPEMKDAK
                     PFDDLNAFVLSLETPRKILLMVNAGSATDAVLDELKPLLSNDDMVIDGGNSHFKDTER
                     RMHLMKEAGLHWIGCGISGGEEGALKGPALMAGGDAQAFQHVKPLLEKLAAKDFRGNA
                     CCTLAGPGGAGHFVKMVHNGIEYAEMQLLAEVYHIMRHGLRMAPDAIASHLEEWNKHE
                     LHSYLLGITVDILRKKEGDGFLIDQVADQAASKGTGSWATQTAAELGAPSTLLTQALF
                     ARYLSARFSERKQASQSLSLANQPSI"
BASE COUNT          382 a          388 c          444 g          393 t
ORIGIN      
        1 gatttgccgg cgatgcactc atcattacct tgcccggttc tccccgtgga gctgaagaaa
       61 ccatggatgc agtgttcccc tacatcctgc atgtgttccg tgtgaaggaa ggagtgcgtc
      121 acaactagtg ccggagggtt agatcatcgc agcgattatg tactatcttt cgctggcatg
      181 catcctgttt attacattac gggcgtggcg ggcagtggca aaaccactgt tggccggatg
      241 ttggccgcac aattgggcct gtcatttttt gacggcgatg attttcattc ctcggccaac
      301 aaagccaaga tggcgtccgg tattccgttg acagatgaag atcgccaggg ctggctgcaa
      361 gccattcatg caaaggcatt ggaggccgct gcttcggcgg gtgctgtatt tgcctgttct
      421 gcgctcaaac aatcttaccg cgatttgctg caacaggatt tgcctgtcgt gcactgggtg
      481 tatctcaaag gcagttatga tttcatcctg catcgcatgc agcagcgcaa ggatcatttc
      541 atgcccgctt cattgctccg ttcacagttt gaaacactgg aagagcccgc tgctgttctg
      601 accattgaca tcgggcagtc tccgcaggct atcatcgatc aaatagtaca acacatgcaa
      661 ccgcattcaa catttggcat cattggtttg ggcgtgatga gcaaaagcct ggcccgcaac
      721 gctgccgcaa agggcatccg tttatcggtg tacaaccggc acgtacccgg caaagaggaa
      781 aaggtggcgg agcaattggt ggccactcat cctgaaatga aggacgcaaa acctttcgat
      841 gatttaaatg cttttgtgct ttcgttggaa acaccacgta agatcctctt gatggtaaac
      901 gcaggcagtg ccaccgatgc ggtgttggat gaattgaagc cactattatc aaacgatgat
      961 atggtgatcg atggcggcaa ttcgcatttc aaagacacgg agcgcaggat gcatcttatg
     1021 aaagaggcag gcctccattg gattggctgc ggtatctctg gtggtgaaga aggtgccctg
     1081 aaggggcctg ctctcatggc cgggggcgat gcccaggcat ttcaacatgt aaaacctttg
     1141 ctcgaaaagc tggccgccaa agattttcgg ggaaatgcct gctgcacttt agcaggcccg
     1201 ggcggtgcgg gtcattttgt aaaaatggtg cacaatggaa tcgagtatgc tgagatgcag
     1261 ttgctggcgg aagtgtatca catcatgcgt catggtttgc gaatggcacc ggatgcgata
     1321 gccagccatt tggaggaatg gaacaagcat gagttgcaca gttatttatt gggcatcact
     1381 gttgatatcc tgcggaagaa agaaggcgat ggatttctga ttgaccaggt agccgaccag
     1441 gcggccagca aaggcaccgg aagctgggcc acgcaaacgg cggcggaatt gggcgcaccg
     1501 tccactttac ttacgcaggc attgtttgcc cgatatctct ctgcccgctt ttctgaaaga
     1561 aaacaggcct ctcaatcatt gtcattggca aatcaaccat cgattga
//
LOCUS       DATIQF010000624         4252 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_25393, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000624 DATIQF010000000
VERSION     DATIQF010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4252
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25393"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..298)
                     /locus_tag="VLL95_10640"
     CDS             complement(<1..298)
                     /locus_tag="VLL95_10640"
                     /inference="COORDINATES: protein motif:HMM:NF013767.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HSR39361.1"
                     /translation="MSTKDFLQEYVEEVRENLRELEDSLLGLERKGRDEEEIRRLFRA
                     AHSIKGASSYMGFERTAHLTHEMESVVSRILKESLPILPQGITTLLGCVDFVSRT"
     gene            complement(323..511)
                     /locus_tag="VLL95_10645"
     CDS             complement(323..511)
                     /locus_tag="VLL95_10645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39362.1"
                     /translation="MITQVLRKWMLLLIGNVLSLALLAQGGASISGTVVDKNTQQVIA
                     GATLKLQPGNKTTLSDGL"
     gene            669..1301
                     /locus_tag="VLL95_10650"
     CDS             669..1301
                     /locus_tag="VLL95_10650"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HSR39363.1"
                     /translation="MDHIWQQYLDEGGEANATAFGVWLIRHSPDVALAKARQKMPALE
                     PSGYPAGYEAMDLSVRSAILVGRLERFLHHLTKGTFKEVGINEDEFLVLATLLYLPRA
                     TKTQLLRQCLIEIPTGSELLKRMKAAGLLLEKPNPDDGRSTFIAISAKGRQILFKAFQ
                     KLEQVENALSVLSPDDKHTLLFLLNRLDAHHSKRHDIKQVSELMQTGPVA"
     gene            1344..1886
                     /locus_tag="VLL95_10655"
     CDS             1344..1886
                     /locus_tag="VLL95_10655"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR39364.1"
                     /translation="MNLQPQHLQNDQVTLVPLAADDFERLYAVACDPLIWEQHPNKNR
                     YQEAVFRTYFEGALASGGAFIICNTVTSQPIGSTRFYDFDADKREVLIGYTFFARSHW
                     GTTYNRATKTLMLDYAFQFVDKVIFHIGARNTRSQIAIGRLGAVKVGEEPIEYYGETP
                     QLNFVYEISKQAWQQRTPQP"
     gene            1934..2950
                     /locus_tag="VLL95_10660"
     CDS             1934..2950
                     /locus_tag="VLL95_10660"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF026066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HSR39365.1"
                     /translation="MTKPAFAAQMEHNRQLALLFHQMANCYRYLGASEKFRAIAYTTA
                     AQTLERLDEPVDSYADSIQHLDQLPGVGESIAAKIEEYLETGRIATLEKLKQSVPFAL
                     LELMEVGGIGPATLRLLHEKAGINSREDLIKAIQGNALKGLRGLGQKKIDHMRQVLKL
                     PEAKQRMPWNTAHRIGSAMLQLIENLAGVKQAALAGSLRRRKETVGDIDIVAAVSPLF
                     QKRIMRKIISLPQVQRVLAAGSTKASLLLKDNGVQVDVRLVHSDEYGAALYYFTGSKE
                     HNIAMRTLAKQHGWKINEYGVFDAKGKRLAGATEEEIYRLFHMKFIPPEKRVGGTEIE
                     QALA"
     gene            2961..3962
                     /locus_tag="VLL95_10665"
     CDS             2961..3962
                     /locus_tag="VLL95_10665"
                     /inference="COORDINATES: protein motif:HMM:TIGR04018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YpdA family putative bacillithiol disulfide
                     reductase"
                     /protein_id="HSR39366.1"
                     /translation="MSPWQSCIFVSMEHYDIVIIGGGPIGLACGIAAKRAGKSYVIVE
                     KGCLVNSLYNYPANMTFFSTAERLEIGNVPFTSLNAKPNRAEALEYYRRVTALFQLNI
                     RLFEAVQGVSKNQDEFTVTSSKTSYTCRFVIVATGFYDLPVKMNIPGEDLPKVTHYYK
                     DPHYYAFQQVLVAGGNNSAVDAALETWRKGAHVTMVMMEGDVGERVKYWVRPDVVNRI
                     KEGSIKAYTHSTLAAIREGEVDIQTPEGLVTIPNDFVIAMTGYQPNFTFLANMGIALS
                     NDEKQHPSYNPETMETNVPGLYLAGVVCGGMDTHIWFIENSREHADRILRHIQIFCK"
BASE COUNT         1119 a         1048 c         1074 g         1011 t
ORIGIN      
        1 gagtcctgga aacaaagtcg acgcagccga gcagggttgt gatgccctgg ggcaagatgg
       61 gaagggattc tttgagaatc ctggagacga cggattccat ctcgtgggtc aggtgagccg
      121 tcctctcaaa gcccatgtag gaggatgcac ccttgatgct gtgtgcagcc cgaaagagcc
      181 ttcggatttc ctcttcatcc ctccccttgc gctccaggcc gagcagagag tcttcgagtt
      241 cccgaaggtt ctcgcgaacc tcctcgacgt attcctgcag gaagtccttg gtagacatag
      301 gcttctcatc ttcccttgtc tgctagagcc catcggagag ggtggtctta tttccaggct
      361 gcaacttcag ggtagcacct gcaattacct gttgtgtgtt cttgtccacc acggtgccac
      421 tgatactggc accaccttgt gccaacaacg ccaggctcag cacattgcca atcagcagca
      481 gcatccattt gcgcaaaact tgtgtgatca taataattga gattgttagt aaaccgtttg
      541 tcagtatgat tgttattctt tgttttcgac cggaatgcaa aggaaaacga actattcgtt
      601 attttgttca aatcggaaat aaaaaatttc aaaataataa taacgcctat ttttgcgcta
      661 tgcggtccat ggatcatatc tggcagcaat acctggatga aggtggcgag gccaatgcca
      721 cggcatttgg tgtttggctc atcaggcaca gccccgacgt ggccctggcg aaggcccgcc
      781 agaaaatgcc ggcattggag ccgagtggtt atcccgccgg gtacgaagcc atggatctca
      841 gcgttcgctc ggccatattg gtagggcggt tggagcgttt cctgcaccat cttaccaaag
      901 gcactttcaa agaagtgggc atcaacgagg atgaattcct ggtattggcc accttactgt
      961 acctgcccag ggctaccaaa acgcagctgt tgcgccaatg cctgattgaa attcctacgg
     1021 gcagcgaact gctgaaaaga atgaaagccg ccggcttgct gcttgaaaaa ccaaacccgg
     1081 atgatggccg ttccacattt attgccatca gtgccaaagg caggcaaatc cttttcaagg
     1141 cctttcaaaa actggaacag gtggaaaacg ctctgtctgt gctttcgcca gatgataagc
     1201 ataccttatt gttcctcctg aatcgcctcg acgcccacca cagcaagcgg cacgacatca
     1261 agcaggtgag cgaactgatg caaacaggac cagtagcctg attgcatggg ttgtatttac
     1321 attagcgttt catttcccgt attatgaacc tgcagcctca gcatttgcaa aatgaccagg
     1381 taactctcgt tccgctggcc gctgatgatt ttgaaagatt gtatgccgtt gcctgcgatc
     1441 ccctgatctg ggagcagcac ccgaataaga atcgttacca ggaggcggtc tttcgcactt
     1501 atttcgaagg cgccctggca tcgggcggtg ccttcattat ttgtaataca gtcaccagcc
     1561 aacctattgg cagcacccgt ttttacgact tcgatgccga taaacgtgag gtgttgatcg
     1621 gttatacttt ttttgcccgc agccattggg gtaccactta caaccgggcc accaaaaccc
     1681 tcatgctgga ttacgctttt caatttgtcg acaaggtgat ctttcacatc ggtgcacgca
     1741 atacccgttc ccaaattgcc attggcaggc tgggcgctgt aaaagtggga gaggagccga
     1801 tagaatacta cggcgaaacg ccacaactca atttcgtgta cgagatttcg aagcaagcct
     1861 ggcaacaaag aaccccgcag ccttgaggaa agtcatatcc tgcgacccct cattttcgta
     1921 ggttactcat gctatgacaa agcctgcttt tgctgcgcaa atggagcaca accggcagct
     1981 ggcgctcctg tttcatcaaa tggccaattg ctaccgctac ctgggtgcca gtgaaaaatt
     2041 ccgggccatt gcctacacta ctgcggcgca aaccctggag cgcctggatg aaccggttga
     2101 cagttatgcc gacagcatac aacacctcga tcaactgccc ggtgtgggcg aaagcattgc
     2161 ggccaagatt gaggaatacc tcgaaaccgg gagaatagcc actttagaaa aattgaagca
     2221 atcagttcct tttgccttgc tggaactgat ggaggtaggc ggcatcgggc ctgccaccct
     2281 gcgattgctt catgaaaagg ccggcatcaa ttccagggag gatttgatca aggccattca
     2341 gggcaatgcg ctgaaaggct tgcggggatt gggtcaaaag aaaattgatc acatgcgcca
     2401 ggtactgaaa ctgcctgaag ccaaacagcg catgccatgg aacactgccc accgcattgg
     2461 atcagccatg ctgcaactaa tagaaaacct ggccggtgta aagcaggcgg cactggctgg
     2521 cagcttgcgg cggcgcaaag aaaccgtggg tgatattgat attgtagctg cggtttcgcc
     2581 cttgtttcaa aagcgcatca tgcgcaaaat aatttcattg ccacaggtgc agcgggtgct
     2641 ggcggcgggt agcaccaaag cgagcctgtt gctcaaagac aacggtgtgc aggtggacgt
     2701 gcgactggtg cacagcgatg aatatggcgc tgccctgtat tacttcaccg gcagcaaaga
     2761 acacaacatt gccatgcgca ccctggcgaa acagcatggc tggaaaataa atgaatacgg
     2821 cgtgtttgat gccaaaggca aaagactggc aggggccacg gaagaagaga tctaccggct
     2881 ctttcacatg aaattcattc ctccggaaaa aagagtgggc ggtacagaaa tagaacaggc
     2941 gctggcctga gcgccaagcc atgagcccat ggcaatcctg tattttcgtg agcatggagc
     3001 attatgatat cgttatcatt ggtggcggac ctatcgggct ggcttgtggc attgcggcaa
     3061 agcgggccgg caaaagctat gtgattgtgg agaaaggctg tttggtaaac agcctctaca
     3121 actacccagc caatatgact tttttctcca cggctgaaag gctggaaata ggcaatgttc
     3181 ctttcacttc gctgaatgca aaacccaacc gtgccgaggc tttggaatac taccggcggg
     3241 tgacagcatt gttccaactc aacatccggt tgtttgaagc tgtgcaaggg gtatcaaaaa
     3301 atcaggatga attcacagtg acaagttcga agaccagcta tacctgtcgc tttgtaatag
     3361 tggctactgg tttttatgac ctgccggtaa aaatgaacat ccccggcgaa gacctgccca
     3421 aagtgacgca ttactacaaa gacccccact actatgcctt tcagcaggtg ctggtggcag
     3481 gtggcaataa ctccgcggtg gatgcagcct tggaaacctg gcgcaaaggt gctcacgtaa
     3541 ccatggtgat gatggaaggc gatgtgggag agcgggtgaa atactgggtg cgccccgatg
     3601 tggtcaatcg gataaaagaa ggcagcatca aagcctacac acattcaaca ctcgcagcca
     3661 ttcgcgaagg ggaagtggac atccaaacgc cggaaggatt ggtaaccatc cccaacgatt
     3721 ttgtcatagc catgaccggc taccaaccca attttacttt cctggccaat atgggaattg
     3781 cattgagcaa tgatgagaaa caacaccctt cttacaaccc cgaaaccatg gaaaccaatg
     3841 tgccgggcct gtatttagcc ggcgtggttt gcggaggtat ggatacacat atctggttta
     3901 ttgaaaacag tcgcgaacat gctgatcgca tattacggca tatccaaatt ttttgtaagt
     3961 agcctcccca ccttgaggct ttgctgggag ggaaaacaca ggagttcatg tattcatgag
     4021 gcaagaattt tttatttaac ccagttaaat ttgtaaactc aaattcctta ccattaggta
     4081 aaaatgggtg aacaaaaaac aatcaagttc gacacgaaaa ctgttatgcc taatcttatc
     4141 aaatattgct tactgtttgg cttgctcatt gccatgcatt tttaaaatgc tcaaaaaagt
     4201 cttgtatatg agcccttaaa atggagtatt gaaattccga atggctttaa ta
//
LOCUS       DATIQF010000625         2489 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_70815, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000625 DATIQF010000000
VERSION     DATIQF010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70815"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..322)
                     /locus_tag="VLL95_10670"
     CDS             complement(<1..322)
                     /locus_tag="VLL95_10670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39367.1"
                     /translation="MNKSDYHTLFAAIATVMLFSCRQTPKQDATRFTDTEVVHRLQDE
                     LTQVIIYDVFTPPVASRIYAYSSLAGYEAIRWADSSSWSLAERMHGFGPMPRPEAGRK
                     YDFGL"
     gene            complement(389..>2489)
                     /locus_tag="VLL95_10675"
     CDS             complement(389..>2489)
                     /locus_tag="VLL95_10675"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FG-GAP-like repeat-containing protein"
                     /protein_id="HSR39368.1"
                     /translation="EQEAMLYENRIVTKPEDKHYLQLKFEGPQWNKAGLGARVTLYQP
                     GNVQYNTQNPYRGYISSISPVMHFGLKPGPIDSLTVDWGDGKRLVISKPNANEVLTLA
                     YKNAADANSLPAIPAMVTDAWFTNVTGASGISFDHFQRDFIDFNIQKLLPHKLSEYSP
                     AMAAGDINGDGLDDMIVGAAPGRAPSVFVQQKDGRFSQRLLYDSVKATYKNQDERGLL
                     LFDADNDKDLDLIIAAGGYSYQSYDSSFTDQFFVNDGKGNFTEDKGALPANATSKLCV
                     RASDIDKDGDLDLFLSGRVKPYFYPQPVSSAIYINESAPGKIKFTDATAKLAPALANM
                     GLVCDALFSDADNDGWPDLVLAGEWMPLRILRNNKGRFEPMAGTGLDQAKGWWNALAA
                     ADFDGDGDMDYVAGNLGLNSFFRATPAYPLRIRAKDFDNNGSFDAIPSLYLKSTLDKD
                     APLAEYPAHGRDDLVKQVLSVRGRFPTYKAFASSTMDSLLPAAMLQGALTLEANEMRS
                     VLIRNNGKAGFEIVPLPGMAQMSPINGMVADDFNGDGHMDLFMSTNDYGADPNVGRYD
                     ALNGLVLQGLGNGSFKPLSMLQSGVTITGNGKALAKLMAANGQCLVAATQNRGPLLLF
                     RQNGNTGQTLRWQPDDAYAILKTADGKTMKVEAYYGSSFLSQSSRLLSLPAWVASCTI
                     VNSSGQERKAAIKTMVP"
BASE COUNT          502 a          690 c          701 g          596 t
ORIGIN      
        1 ccaggccaaa atcgtatttc cggcccgctt ccggccgggg catgggcccg aaaccgtgca
       61 tgcgttcggc cagcgaccag ctgctgctgt cggcccagcg gatggcctcg tagccggcca
      121 ggctggaata ggcataaatg cgggaagcca ccggcggcgt aaatacatcg tagatgatca
      181 cctgcgtcag ctcgtcctgc aggcgatgca ccacttcggt atcggtgaac cgggtagcat
      241 cttgtttcgg cgtttggcgg cacgaaaaca gcatcactgt tgcgatagct gcaaaaagag
      301 tatgatagtc tgacttattc atgttggttg ggattatctg cattttcttt tcatagtagt
      361 aagtgcgcat ggcgatcggt catcgctttc aaggcaccat cgttttaatg gcggctttgc
      421 gctcctggcc actgctgttc acaatggtac acgatgccac ccaggctggc aggctaagca
      481 ggcggctgct ttgtgaaagg aaggaactgc cgtaataggc ttccactttc atcgttttgc
      541 catcggcagt tttcaggatt gcataagcgt catcgggctg ccaccgcagg gtttggccag
      601 tgtttccatt ttgccggaac agcagcaggg gtccccggtt ttgggtggcg gccaccaggc
      661 attggccatt ggcggccatt agttttgcca gcgctttgcc attgccggtt atggtaacgc
      721 cactttgcag catgctcaac ggcttgaaac tgccattgcc cagcccttgc agcaccagcc
      781 cgttcagtgc atcgtagcgg cccacattgg ggtcggcgcc gtagtcgttg gtgctcatga
      841 aaaggtccat gtggccatcg ccattgaaat cgtcggccac catgccattg atggggctca
      901 tttgcgccat gccgggcagc ggcactattt caaagccggc tttgccattg ttgcggatca
      961 gtaccgacct catttcattg gcctccagcg tcaacgcccc ctgcagcata gctgcgggaa
     1021 gcaggctgtc catagtggag ctggcaaaag ccttgtaagt gggaaatctt ccccgcacac
     1081 tcagcacctg cttcacgagg tcatcgcggc catgggcggg gtattcggcc agcggggcat
     1141 ctttgtccag cgtgctcttg aggtaaagcg agggtatggc atcaaaactg ccgttgttgt
     1201 caaaatcttt ggccctgatg cgaagcgggt aggctggcgt cgcccggaaa aaactgttca
     1261 accccaggtt gccggccaca taatccatgt cgccgtcccc gtcaaaatcg gcagccgcga
     1321 gggcattcca ccagcccttc gcctggtcca ggccggtacc agccatgggt tcaaaacgtc
     1381 ccttgttgtt gcgcaaaatg cggaggggca tccactcccc ggccagcacc aggtcgggcc
     1441 agccgtcgtt gtcggcatcg ctgaacaagg catcgcaaac caatcccata ttggcaagcg
     1501 ccggcgccaa ctttgcggtg gcatcggtga attttatttt gccgggtgca ctctcattga
     1561 tatagatcgc actgctcacc ggttgcgggt aaaaataagg tttcaccctg ccggataaaa
     1621 agaggtcaag gtccccgtct ttgtcaatat cgctggcccg cacacaaagc ttgctggtag
     1681 cgttggccgg cagcgcccct ttgtcttcgg tgaagttgcc tttgccatcg tttacaaaga
     1741 actggtcggt aaacgaagag tcgtaagatt gataactata accaccggcg gcaatgatca
     1801 ggtcaaggtc tttgtcgtta tcggcatcaa acagcagcag gccccgttcg tcctggtttt
     1861 tgtaagtggc cttcaccgaa tcgtacagga gccgctggga aaacctgcca tccttttgtt
     1921 gcacaaaaac agagggtgcc ctgccagggg cggctcctac tatcatatca tcgaggccat
     1981 cgccgttgat gtcgccggcc gccattgcgg ggctgtattc cgacaacttg tgcggcaaca
     2041 atttctggat attgaaatca atgaaatcgc gttggaaatg gtcgaatgaa atgccgctgg
     2101 ccccggtgac attggtaaac caggcatccg ttaccatggc agggatagca ggcaggctgt
     2161 tggcgtcggc tgcattttta tacgccagtg tcagcacctc gttggcgtta ggcttactga
     2221 tgaccagtcg tttgccatcg ccccagtcca ccgtcagtga gtcaatgggg ccaggcttca
     2281 gtccaaaatg catcaccggg ctgatgctgc tgatgtagcc gcggtagggg ttttgggtat
     2341 tgtactgcac attgccgggc tggtagagcg ttacccgggc ccccagtccc gccttgttcc
     2401 attgcgggcc ttcaaacttc agttgcaggt aatgcttgtc ttctggtttg gtgacaatcc
     2461 tgttttcata cagcatggct tcctgctca
//
LOCUS       DATIQF010000626         1946 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_55751, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000626 DATIQF010000000
VERSION     DATIQF010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55751"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..191
                     /locus_tag="VLL95_10680"
     CDS             <1..191
                     /locus_tag="VLL95_10680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39369.1"
                     /translation="FRLRDEGGGLLVTTPTAAFDEVGGLLVTTPTAAFQNTNSGGFTR
                     KALTDTASAQFTPHSRIQ"
     gene            complement(195..959)
                     /gene="folE"
                     /locus_tag="VLL95_10685"
     CDS             complement(195..959)
                     /gene="folE"
                     /locus_tag="VLL95_10685"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: protein motif:HMM:NF006824.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HSR39370.1"
                     /translation="MKPNGTLWNTPAKVLEETGFETKERLADMKEVDGVGALTIDEIG
                     DEHISTSYDTPLRPDAFELSDAEKMDIIEGHFREIMLTLGLDLSDDSLKGTPRRVAKM
                     YVQEIFNGLDPKNQPKVALFDNKYQYNEMLVEKNITFYSNCEHHFVPIIGKAHVAYIS
                     NGKVIGLSKINRIVQYFAKRPQVQERLTVQIANYLKQVLQTEDVAVLIDAAHMCVSSR
                     GIQDQTSTTVTSHFSGAFRSEAKKMELLHYIGKLEA"
     gene            complement(922..1329)
                     /locus_tag="VLL95_10690"
     CDS             complement(922..1329)
                     /locus_tag="VLL95_10690"
                     /inference="COORDINATES: protein motif:HMM:NF013411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HSR39371.1"
                     /translation="MKVSVFRKEHFNAAHRLHNPALSAEENATLFGKCNYPNYHGHNY
                     ELIVQVTGDIDPKTGYVMDMKVLSDLIKREVHERFDHRNLNLDTEAFKNLIPTAENIV
                     VVIYQLLRPHINPLHDLKIRLYETERNFVEYPG"
     gene            1597..>1946
                     /locus_tag="VLL95_10695"
     CDS             1597..>1946
                     /locus_tag="VLL95_10695"
                     /inference="COORDINATES: protein motif:HMM:NF013411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HSR39372.1"
                     /translation="MVYLTRVEHFNAAHKLYNPDWSREKNDEVFGKCANDNWHGHNYE
                     IHVTVKGEPDPETGFIIDVKRLSHIIKDHLLDKVDHRNLNLDVDFMQGKMCSTEVFVK
                     EIWKQLEPHISGGRL"
BASE COUNT          453 a          477 c          506 g          510 t
ORIGIN      
        1 ggtttcggct tcgagatgag ggtggcgggc tgttggtgac aacaccaaca gcggcattcg
       61 acgaggtagg ggggctgctg gtgacaacac caacagcggc gtttcaaaat accaacagcg
      121 gcggcttcac aagaaaggca cttaccgata cggcaagtgc ccaattcaca ccacactcca
      181 gaatacaata gtttttatgc ttccaatttc ccgatatagt gcagcagttc catctttttg
      241 gcttcgcttc ggaaggcgcc gctgaaatgg ctggtgaccg tagtggaggt ttggtcttgt
      301 atgccacggc tgcttacgca catgtgcgcc gcatctatca gcacggccac atcttctgtt
      361 tgcaatacct gcttcaggta gttggctatc tgcacggtga ggcgctcctg cacctgcggc
      421 cgcttggcaa agtattgcac aatgcggttg atcttgctga ggccaatcac cttgccgttt
      481 gaaatatagg ccacatgcgc cttgccaatg atgggtacaa aatggtgctc gcagttgctg
      541 tagaaagtga tgttcttttc caccagcatt tcgttgtact ggtacttgtt gtcgaacagg
      601 gccactttgg gttggttctt cggatcgagg ccgttgaaga tctcctgcac atacattttg
      661 gccacccggc ggggcgttcc tttcaaactg tcgtcgctaa ggtcgaggcc cagcgtgagc
      721 atgatttcgc ggaaatgccc ttcgatgatg tccatttttt cggcatcgct cagctcaaaa
      781 gcatcgggcc gcaggggcgt atcgtaggag gtgctgatgt gttcgtcacc tatttcatca
      841 atggtgaggg cgcctacgcc atccacttct ttcatatcgg ccagtctttc ttttgtttca
      901 aagcctgttt cttccaacac tttagccggg gtattccaca aagttccgtt cggtttcata
      961 caatctaatt ttcaaatcgt gtaaggggtt tatgtgcggc cgcaacaact ggtaaatgac
     1021 taccacaatg ttttcggccg tcgggatcag gttcttgaat gcttcggtat ccaggttgag
     1081 gttgcgatgg tcgaagcgtt cgtgcacctc ccgtttgatg aggtcactca gcactttcat
     1141 gtccatcacg tagcctgttt tgggatcaat gtcgccggtt acctgcacaa tcagttcata
     1201 attgtggccg tggtaattgg gataattgca tttaccaaac agggtggcat tttcctccgc
     1261 actcagtgcc gggttgtgca aacgatgggc ggcattgaaa tgctctttcc tgaacacaga
     1321 aaccttcatg ttgattcggt catttttttg taaagatttg aaggattcgc ccggggttgg
     1381 tagccggagg ctcttgcgct tgcagctggc aactcaatga gccgggcaaa tagcagtaaa
     1441 atctttactg tttacaatta caataatggc ataaaaaggt tgaaagggtc ggcattggtc
     1501 gttgacccac aggccccgga atgccagcgc tgcccaattt ccggctattt gttaaaatca
     1561 gcaaaaccca gagcagacca ttatttttgc ggcgctatgg tgtacctcac aagggtggag
     1621 catttcaacg cggcccacaa actgtacaac cccgattgga gcagggagaa gaatgatgaa
     1681 gtctttggca aatgtgccaa cgacaactgg catggccata actatgagat ccacgtaacg
     1741 gtaaagggcg agcccgaccc ggaaaccggt ttcatcatcg atgtcaaaag gctgagccat
     1801 atcatcaagg accacttgct cgataaggtc gaccaccgca acctcaacct cgatgtcgat
     1861 ttcatgcagg gcaaaatgtg cagcaccgaa gtatttgtga aggagatctg gaagcaactg
     1921 gaaccacaca tttcgggtgg caggct
//
LOCUS       DATIQF010000627         1791 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_116686,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000627 DATIQF010000000
VERSION     DATIQF010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1791
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116686"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..684
                     /locus_tag="VLL95_10700"
     CDS             <1..684
                     /locus_tag="VLL95_10700"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HSR39373.1"
                     /translation="LVQLALSWLLAWWLARKDLSILGLRPTKSRLTDFALFFAVAAFF
                     SATEFLLKMWIIDQRWHLNPNATPQLILEGLWWNIKSVLFEELIFRGVIFYLLIKKLG
                     VSKAILISSIAFGIYHWFSQGLWGQPIPMLFMFVASGLMGAVYAYGYAKTYSLYVPIA
                     IHLGWNSMRSVVFSGTSIGDQLLVANKPLPEVNVSYPVFFLLLLFHMVGVILTCYWLL
                     KKHRQEPAQ"
     gene            751..>1791
                     /locus_tag="VLL95_10705"
     CDS             751..>1791
                     /locus_tag="VLL95_10705"
                     /inference="COORDINATES: protein motif:HMM:NF024882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HSR39374.1"
                     /translation="MATQGKKRNLGSQGGLKQEKETPVKVSEVVRDERTHKISGFALL
                     IFSILLFMALVSYCFTWKQDQDKVFAAGANFLFAENLPVDNLLGRLGAWTGHQLIYNG
                     FGLAAFLLCTFPFVLGVNLIFGKPIFSLWRNLKYVVTGIVFFSVALAYALPGTDFSYG
                     GAVGEYSSQYLNNLMGKAGTGMLLFVAGMTWFIWCFNPTFRLPKRIEKPAAQPAEAET
                     TDTPAAAVAAPVAAASEAQLFIEQEAPAPSPFQSLAGSGKTINELYAEAAATSLGQTE
                     TAAPVPASGNSLSGDEGGVSVILPQPVKKDEDPVNAIGVNESNEPVDNLIAVSMPSKD
                     PVVMAEELPDEED"
BASE COUNT          381 a          484 c          456 g          470 t
ORIGIN      
        1 cttgttcaac tcgccctgtc gtggctgctg gcctggtggc tggcccgcaa agacctttcc
       61 attcttggcc tccgccccac caaaagccgg ctgaccgatt tcgcactctt ctttgccgtg
      121 gctgcttttt tcagcgccac cgagtttctc ctaaaaatgt ggatcatcga tcaacgctgg
      181 cacctgaatc ccaatgccac tccacaactc attctcgaag gcctctggtg gaatatcaaa
      241 tctgtgcttt ttgaagaact cattttccgc ggagtcattt tctatttgct catcaaaaaa
      301 ctgggtgtct ccaaagccat ccttatttct tctattgcct ttggcattta ccattggttt
      361 tcacaaggct tgtggggcca gcctataccg atgctgttta tgttcgtggc atcgggcctc
      421 atgggagcgg tgtacgccta tggctacgcc aaaacctatt ctttgtatgt acccatcgcc
      481 attcacttgg gttggaacag catgcggagc gtggtttttt ccggtacttc catcggcgac
      541 cagttgctgg tggccaataa gcccctgccc gaagtgaacg tttcctatcc ggtttttttt
      601 ctcttattgt tgtttcatat ggtgggtgtg atcctcacct gctactggct gctgaaaaaa
      661 caccggcagg agcccgcaca ataaatcccc acccggtggg ttttttgttg gaagcgccaa
      721 tatgggcgac ggttatcttt ggttttactc atggctacac aaggaaagaa acggaatttg
      781 ggctcccagg gtgggttgaa acaggagaaa gaaacaccgg taaaggtgtc tgaagtggtt
      841 cgcgacgaaa ggacccacaa gatcagtggc tttgccctgc tcattttcag catcctgctt
      901 ttcatggccc tggtatccta ttgctttacg tggaagcaag accaggacaa ggtatttgct
      961 gccggcgcca actttttgtt tgccgaaaat ctgcctgtcg acaatttgct gggccgcctc
     1021 ggtgcctgga caggtcacca attgatctac aacggttttg gcctcgcagc cttcctgttg
     1081 tgcacttttc ccttcgtgct gggcgtgaat ctcattttcg gcaagcccat tttttcgctg
     1141 tggcgcaacc tgaaatatgt ggtaacgggc atcgtgttct tcagcgtggc gctggcctat
     1201 gcactgcccg gcaccgattt tagctatggt ggtgccgtgg gtgaatacag cagccaatac
     1261 ctgaacaacc tgatgggcaa ggctggcacc ggcatgttgt tgtttgttgc gggcatgact
     1321 tggttcatct ggtgcttcaa tcccactttc cggcttccca aaagaatcga gaagcctgcg
     1381 gctcagcctg ctgaagccga aacaactgat actccagctg ctgcagttgc tgccccagtg
     1441 gcggctgcca gtgaggcgca actcttcata gaacaggaag caccggcccc ctctcctttc
     1501 caatcgctgg ccggcagcgg caaaaccatc aacgaactgt atgctgaggc tgccgcgaca
     1561 tcgctgggtc agacagaaac cgctgcacca gttcctgcaa gtggcaacag cctgagcggt
     1621 gatgaaggtg gcgtcagtgt catcctgcca cagcctgtca aaaaagatga agacccggtg
     1681 aatgccattg gtgtcaatga atcgaatgaa ccggtggaca acctgatcgc cgtatcgatg
     1741 ccatccaaag accccgtggt gatggccgaa gaattaccag atgaagaaga c
//
LOCUS       DATIQF010000628         2293 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_253233,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000628 DATIQF010000000
VERSION     DATIQF010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2293
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253233"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..953)
                     /locus_tag="VLL95_10710"
     CDS             complement(<1..953)
                     /locus_tag="VLL95_10710"
                     /inference="COORDINATES: protein motif:HMM:NF013670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HSR39375.1"
                     /translation="MKHLFSCGLFLCLAALVQAQPRMGIIKGKLPQLSYSNGTDRLGS
                     AKAGYIDTGIVVKVVDSVNGNYSLQLSKQRTAFLAKEFVTLTSDSVPTKAALMESWMV
                     KGGEKYDTVSIGLSAAVPYTSWMETDPATIWVELYGVQSNTNWITQLTSAKGIKQVSW
                     QQTEDDVVQVKIVLHQQQHLGYRIAYAGRRLVMLVTRKPEHAHVRDFVLAIDAGHGGS
                     NTGASGIKSKELEKNYTILFAKELEKLCRKRGMQVIMTRTNDTSIDNKDRLIYLDSLR
                     PDLLISFHLNSSSRTTVRGVSTYYRHVAFRPLTQIILRQLL"
     gene            complement(985..>2293)
                     /locus_tag="VLL95_10715"
     CDS             complement(985..>2293)
                     /locus_tag="VLL95_10715"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSR39376.1"
                     /translation="AGYCKNITVKLLEDGSCSCEDDGRGIPVDMHERGVSAAEVVMTM
                     LHAGGKFDHSSYKVSAVFPIPQGLEDEIIAAIKARYTSYPLADGELDLRQAVCAFYKR
                     FLGLDYAINEIQIASGGRPLIYTLFKTLVDKGDKVVYPVPSWNNNHYVVLTEAEHCVV
                     PTLPEHNFMPTAEDLAPHIPGAALLCLCTPQNPTGTTLDRSELEKICDMVLAENAKRG
                     PGEKKLYVFFDQMYWSLTYGDNQHYNPVSLVPAMKDYTIFVDGISKCFAATGVRVGWS
                     FGPAEVIAKMKAILSHVGAWAPMAEQKATAQFLQHENAIEKFWQQFKTDIQYRLHSIY
                     NGIMQLKENGFAVDAIAPQASIYLTIQFDLKGKTKPDGTVLADQAAVTQYLLEAAGLA
                     IVPFYAFGAERSSAWYRLSVGTCRKEDIEPMFEKLEKALKALQ"
BASE COUNT          488 a          617 c          595 g          593 t
ORIGIN      
        1 tccagcaatt gccggagtat gatctgcgta agtggccgga aggcaacatg gcgataatag
       61 gtactcaccc ctcttactgt ggttcggctg ctggagttga gatgaaagct gataagtaag
      121 tcgggccgca ggctgtcgag atagatcagc cggtctttgt tgtcgatgct ggtgtcgttg
      181 gtacgcgtca tgatcacctg catgcctctt ttgcgacaga gcttttccag ctccttcgca
      241 aaaaggatgg tataattctt ttccaactcc ttgcttttga tgccgctggc gccggtgttg
      301 ctgccgccat ggccggcatc gatggccaac acaaaatcgc ggacatgcgc atgctccggc
      361 tttcgggtaa ccagcattac caatcgcctg ccggcataag caatgcggta gccgaggtgc
      421 tgctgctggt gcaatacaat ttttacctgc accacatcat cttctgtttg ctgccagctc
      481 acctgcttta tgcctttggc cgaagtgagt tgcgtgatcc agttggtgtt ggattgtaca
      541 ccatacaact ctacccaaat agtagccggg tctgtttcca tccatgatgt gtagggcacg
      601 gctgcactca agccaatgct cacggtgtca tatttctcac cgcccttcac catccacgat
      661 tccatgaggg cggcctttgt gggcacacta tcgcttgtca gcgtcacaaa ctctttggcg
      721 aggaaggccg tgcgttgttt ggaaagttgc aggctgtagt tgccgtttac actgtccacc
      781 actttcacta caatgccggt atcaatatag ccggccttgg cactgcccag cctgtcggtt
      841 ccattactgt aggatagttg tggcaacttg cctttgatga tgcccatgcg tggctgtgcc
      901 tgcaccaatg cagcgaggca caaaaaaagg ccgcatgaaa agagatgttt catgcggcaa
      961 tttaacgagc aaaccaacgt gcctttattg taatgctttc aaagcctttt ccagtttttc
     1021 aaacatgggc tcaatgtcct ccttcctgca ggtgccaaca ctcaggcggt accaggcaga
     1081 agaacgctct gcaccgaaag cataaaaagg aacaatggcg aggcctgccg cttccagcaa
     1141 atactgcgta acggccgcct ggtcggctag tacggtgcca tccggttttg tttttccctt
     1201 caggtcaaac tggatggtga ggtagattga agcttgtggt gcaatggcat ccactgcaaa
     1261 tccgttttcc ttcaattgca tgatgccatt gtaaatcgag tgcaagcggt attggatatc
     1321 ggtcttgaat tgctgccaga atttttcgat ggcgttttcg tgctgcagga attgcgctgt
     1381 cgccttttgc tcggccatgg gtgcccatgc tcccacatgg ctcaagatgg ccttcatctt
     1441 ggcaatcact tctgccgggc cgaatgacca acccaccctt acgccggtag ctgcaaaaca
     1501 tttgctgatg ccatccacaa aaatggtata gtctttcatg gcaggcacca ggcttaccgg
     1561 gttgtaatgc tggttgtcac cataagtgag cgaccaatac atctggtcga agaatacata
     1621 tagtttcttt tcaccgggtc cccgcttcgc gttttccgcc agcaccatgt cacagatctt
     1681 ttccagttct gatctatcca gtgtggtgcc agttgggttt tgtggcgtgc acaaacaaag
     1741 cagggcagcg ccgggaatat gcggcgccaa atcttcagcc gttggcataa agttgtgctc
     1801 aggcagcgta ggcaccacgc aatgctccgc ttcggtgagc accacatagt ggttgttgtt
     1861 ccagcttggt acagggtata ctactttgtc acctttatca accagtgttt tgaacaaggt
     1921 gtatatcaaa gggcggccgc ccgatgcgat ctgtatttcg ttgatggcat aatcgaggcc
     1981 caaaaaacgc ttgtagaagg cgcataccgc ctgtcgcaga tccaactcgc catcggccag
     2041 cggatagctg gtataacggg ccttgatggc tgcaatgatc tcatcttcca ggccttgcgg
     2101 tatgggaaaa acggcgctga ccttgtagct cgagtgatcg aacttgccgc cggcgtgcag
     2161 catcgtcatc acgacctccg cggcgctcac gccgcgctcg tgcatgtcca ccgggatgcc
     2221 gcgcccgtcg tcctcgcagg agcagctgcc gtcctccagc agcttcaccg tgatgttttt
     2281 gcagtagccg gcg
//
LOCUS       DATIQF010000629         2179 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_70855, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000629 DATIQF010000000
VERSION     DATIQF010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2179
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70855"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            155..1630
                     /locus_tag="VLL95_10720"
     CDS             155..1630
                     /locus_tag="VLL95_10720"
                     /inference="COORDINATES: protein motif:HMM:NF025714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4403 family protein"
                     /protein_id="HSR39377.1"
                     /translation="MRKFLWFLLGLLLLLALVFWWYVRQHQQKKIELPAAMQDTIPVK
                     VPVSTFRLPINYALADLQTFLNQKIAGEFLETTLSPTGNDKDQVKVEMSRVSNIRLSA
                     EGQQLVIQFPLQVKASIMQSRLRFITKGIKPVVTSVVLTLKTPASLDGQWRLVTKFNL
                     ASVKWIEPPVVSIAGVKIDLTKKCDDAIQQNKNKLTSLLDTEINKAVSLREPVGKIWE
                     DLQKPIVIVKKPAPVYLRFICQEIGGDFSVNAKELVCYTTIKAGVAIVSQTNLRAPVL
                     PLPAFQGMVRTSDLSDAFVYAFAEFNAINHELQRSLQGMTFSEKGITATIDKVQVYAA
                     DAGLVVQAAVRGDIDGDLVATGRPVFDSVAQQFQLQQFQFQLSSSSPLLNTGEALMHD
                     RIRDTIQSKLMVGLDSQIARIPSIIEKAISKGKTGRTIDVEVGQFRIASCEVNMSANR
                     IHLLVHVLFAGSIRLKHLNAGKAIRISPGGKKKDDANSVGK"
     gene            complement(1848..1937)
                     /locus_tag="VLL95_10725"
     tRNA            complement(1848..1937)
                     /locus_tag="VLL95_10725"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1901..1903),aa:Ser,seq:cga)
BASE COUNT          556 a          499 c          549 g          575 t
ORIGIN      
        1 ggttgttgct gcatagcgcc gaaggtaacc aacaaatgcc gcactggtct gtgtccatac
       61 aaacctgcct gctaatgtcc tggtttatgt catcacaaac ctgtcggcgt tgcctctctt
      121 ttaagttcgt agatttgagt atcaagccac cgccatgcgc aagtttcttt ggtttttgtt
      181 gggtttgctc ctcctgttgg ccctggtttt ttggtggtat gttcgtcagc atcagcaaaa
      241 aaagatagag ctgcctgccg ccatgcagga taccataccc gttaaggttc ctgtgtccac
      301 ttttcgcctt cccattaact atgctttggc cgatttgcag acttttttga atcagaaaat
      361 tgccggtgaa ttcctggaaa ccacgctcag ccctacaggt aacgacaaag accaggtgaa
      421 agtggaaatg tcccgggtta gcaatatcag gttgtcggcg gaaggccaac agttggtcat
      481 tcaatttcca ctgcaggtaa aagcgagcat catgcaatcg aggctgcgat ttattaccaa
      541 aggcataaaa ccggtagtta ccagcgtagt gctcaccttg aaaacgccgg cttcgttgga
      601 tggccaatgg cggttggtta caaaatttaa cctggcctca gtaaaatgga ttgagccccc
      661 ggttgtatct attgcaggtg tcaaaattga cctgaccaaa aaatgcgacg atgccattca
      721 gcaaaacaag aataaactga ccagcttgct ggatacagag atcaacaaag cggtttcatt
      781 gcgtgaaccg gtcggcaaaa tctgggaaga tcttcaaaag cccattgtaa ttgtaaagaa
      841 gccggcaccg gtttatctca ggttcatatg ccaggaaata ggtggcgatt tttccgtgaa
      901 tgcgaaggag ttggtttgtt atactaccat caaggcaggc gttgccatag tctcccaaac
      961 caatttgagg gcgcctgtgt taccactccc tgccttccag ggcatggtcc gcacatccga
     1021 cttgtctgat gcttttgtat atgcctttgc tgaattcaac gccattaacc atgaactgca
     1081 gagatctttg caggggatga cattttccga aaaaggaatt actgctacca ttgataaagt
     1141 gcaggtatat gcagccgatg ctggattggt ggtgcaagcc gcggtaagag gagacatcga
     1201 tggcgacctg gtggctacgg gcagacctgt atttgattct gtcgcccaac aatttcaact
     1261 gcaacaattt caatttcagc tttcatcaag cagtcccctg ttgaataccg gcgaagccct
     1321 gatgcacgac aggatcaggg ataccataca aagcaagttg atggtgggcc ttgattcgca
     1381 gatagcccgc attccgtcta tcatcgaaaa agccatttca aaggggaaga cggggagaac
     1441 cattgatgtg gaggtagggc agtttcgcat agcctcttgt gaagtaaata tgagtgccaa
     1501 tcgtattcac ttgctggtgc atgtattgtt cgctggttcc atccgcctga aacacctgaa
     1561 tgccgggaag gctatcagga tttcgccggg tggcaagaag aaagatgatg cgaattccgt
     1621 gggaaaatag gcttggcagg cttgtggttt agcaaaaaaa tctttcggta ataatcgtgc
     1681 ttcattagtg ggattggctt tgccgatcct tgagggggga ggcttcagcc aaaatgattg
     1741 gccggtcgct gcgctccctt ttcttttttg tttcctgcgc ttaggcgaac gagttcgcca
     1801 cgctccgaaa acaaaaaagc cccctggcgg gggccaatca ttttggctgg cggagaggga
     1861 gggattcgaa ccctcggtac agttgcccgc acaacggttt tcgataccgc cccattcgac
     1921 cgctctggca cctctccgga agttgtaaag gtaattgccg gaaatattgc aggaatgaaa
     1981 accttgggga aatcagtgtg acctcacctt aaaaagggca ttgaaaaatg cgaaagcata
     2041 agcttccaac tcagattaca attatggcga tttactgttt tgttacttgg gctgcaccac
     2101 tgcttcaaac ctggcaaagg gcgccatttt gtttttggaa aaactcagct tgttgcctga
     2161 taactggtaa gcattggtt
//
LOCUS       DATIQF010000630         1671 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_192523,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000630 DATIQF010000000
VERSION     DATIQF010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192523"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1671
                     /locus_tag="VLL95_10730"
     CDS             <1..>1671
                     /locus_tag="VLL95_10730"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HSR39378.1"
                     /translation="EADLDRTFQAGKLVGLGPTTLRNIYAHLQKCYAHHVGWEFKYIS
                     DQKKIDWLTNEIERKFHEPLPVEQRRRILEKLNQGVMFEKFLHTKYIGQKRFSLEGGE
                     TTIAALDQIINTAADQGVEEVVIGMAHRGRLNILANIMGKTYEQIFSEFEGTAIPDTT
                     MGSGDVKYHLGFGSQPETANGKTINLKLAPNPSHLEAVNPVVLGFSRAKADVMYNHEY
                     DKVLPVLIHGDASIAGQGIVYEVLQMSKLNGYSTGGTIHFVINNQIGFTTDFTDARSS
                     DYCTSLAAAIQAPVFHVNGDDAEAVVKAVDIATRFRQEFNCDVFVDMVCYRRHGHNEG
                     DDPKFTQPGLYALIDKHPNPREVYVQWLLENGDTQAKELAKEMEKKFWDDLQARLDGV
                     KQNPLPYHYQKPEEWWRELRRATDADFESSPATAVPEAQLMHCFNSIMTLPEGFKPLR
                     KVDKLLADKKKLFETDQKFDWATGELLAYATICQQGYDVRMSGQDVGRGTFSHRHAVL
                     RDEVTDKFYNRLSHLGEEQGRFRIYNSLLSEYGVLGFEYGYAMANPHA"
BASE COUNT          441 a          428 c          438 g          364 t
ORIGIN      
        1 ggaagctgat cttgaccgca ctttccaggc gggcaaactg gtaggacttg gccccaccac
       61 cctccggaac atttatgccc acctgcaaaa atgctatgcg catcacgtag gttgggagtt
      121 caaatacatc agcgatcaaa aaaagattga ctggcttacc aacgaaattg agcgcaaatt
      181 ccatgaaccg ctgccagtgg aacaacgtcg ccgcatcctg gagaaactga accagggcgt
      241 gatgttcgaa aagttcctgc acaccaagta cattggtcag aagcgcttca gcctggaagg
      301 tggtgaaacc accattgcgg ccctggacca gatcatcaat actgctgccg atcagggggt
      361 ggaagaagtg gtgataggca tggcgcatcg cggccgtttg aatattctcg ccaacatcat
      421 gggcaagacc tatgagcaga tcttcagcga atttgagggt actgccatcc ccgataccac
      481 catgggtagc ggcgacgtga aatatcactt aggatttggc agccagcctg aaactgccaa
      541 tggcaaaacc atcaacctca agttggcccc taaccccagc cacctcgaag ccgtgaaccc
      601 ggttgtgttg ggcttttcac gtgccaaggc cgatgtgatg tacaatcacg aatacgacaa
      661 ggtgctgcca gtactcatcc acggtgatgc ttctattgcc ggccagggta ttgtgtacga
      721 agttttgcaa atgagcaagc tgaatggata cagcactggc ggtaccattc attttgtgat
      781 caataaccaa attggtttta ctaccgactt taccgatgcc cgcagttcag attattgtac
      841 cagccttgcg gcggctatac aggcaccggt attccatgta aatggcgatg acgcggaagc
      901 tgtagtgaaa gccgtagata ttgccacccg ctttcgacag gaattcaact gcgatgtatt
      961 tgtagatatg gtgtgctacc gccgccatgg ccacaacgaa ggcgatgatc ccaaattcac
     1021 gcagcccggt ttgtatgccc tcatcgacaa gcatcccaac ccccgggaag tgtatgtgca
     1081 gtggctgctc gaaaatggtg atacccaagc caaagaactg gccaaggaaa tggagaagaa
     1141 attctgggac gatttgcagg cccggttgga cggcgtgaag caaaatccat tgccttatca
     1201 ttatcaaaag ccggaagagt ggtggcgtga actgcgccgt gccaccgatg ccgatttcga
     1261 aagcagtccg gcaacagcag tacctgaagc gcaactgatg cattgcttca acagcatcat
     1321 gacgctgccc gaaggtttca agccactccg caaagtggac aaactgctgg ctgacaaaaa
     1381 gaaattgttt gagactgatc agaagtttga ctgggccacc ggcgaactgc tggcctatgc
     1441 caccatttgc cagcaaggct atgatgtacg catgagtggg caggacgtag gtcgtggtac
     1501 tttcagccac cgccatgctg tgcttcgcga tgaggtgacc gataaattct acaaccgcct
     1561 cagccatctg ggcgaagagc aggggcgctt ccgcatatac aacagtttgc tgagtgaata
     1621 cggagtgctt ggttttgaat acgggtatgc catggctaac ccacatgcat t
//
LOCUS       DATIQF010000631         1601 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_207990,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000631 DATIQF010000000
VERSION     DATIQF010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207990"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1100
                     /locus_tag="VLL95_10735"
     CDS             <1..1100
                     /locus_tag="VLL95_10735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39379.1"
                     /translation="KAFVIFLLGLLALGAGQVPLYAQPKIPAAADQALFEILNLRTQT
                     ARNIIAQGRAAEPNNLYYDYLDNWMEVIELALYEQDERYGQYLQSFEERIRHVKATGN
                     RNDPAYNILLGEMYVHAGMANILYNDHFDGFRKILTADDYVDENLEKHPGYWMNNKLS
                     GTMNVGFDMMPSMLKWFANLFGLKGNANAGYRQLNQYLKSVNEQPGLKAEALLYYGFV
                     LKLSKRDQEAANLMQMNTTLAQAPALNIFFLSTLQYISGNNEEAMKALSAFPKNKIEL
                     PFRHISYLEGREKINRLDPDAYVPFTQFLRSSNFKNNKRDVCLKLSYHYFMLNDKDRY
                     HYYLQLINSYPKSKMDRDKEADVESARGYDP"
     gene            1128..1502
                     /locus_tag="VLL95_10740"
     CDS             1128..1502
                     /locus_tag="VLL95_10740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39380.1"
                     /translation="MSGGYFSRAKTILQSIVFASLVNKAYQTEYCLLMAKVALAERRT
                     EDAIAFCNKAIELGRERKEHYAAEAALVAGIAAQQKNSINQALQFWKMAMQIDGQGDV
                     YIENIHKIAKQKIAMANSGSPH"
BASE COUNT          456 a          432 c          368 g          345 t
ORIGIN      
        1 gaaaagcctt tgtgattttt ctcctgggac tgttggcttt gggagcaggg caagttccat
       61 tgtatgcgca acccaaaata cctgccgctg ccgaccaggc tttgtttgaa atcctgaacc
      121 ttcgtacgca aacagcccgc aacatcattg cacagggaag ggccgcagaa cctaacaacc
      181 tgtattacga ttacctcgac aactggatgg aggtaattga gctggccttg tatgagcagg
      241 acgaacgcta cggccaatac ctgcaatcat ttgaagagcg gatcagacat gtgaaagcaa
      301 cgggcaatcg caacgatccg gcttacaaca tcctgctggg tgaaatgtat gtgcatgccg
      361 gcatggccaa tatcctgtac aacgaccact tcgacggctt ccgaaaaatc ctgaccgctg
      421 atgattacgt agatgagaac ctggaaaaac atcccggcta ctggatgaac aacaaactca
      481 gcggcaccat gaacgtgggt ttcgatatga tgccttccat gctgaaatgg tttgccaatc
      541 tctttggcct caaaggcaat gcaaatgccg gttaccggca actgaaccaa tacctgaaaa
      601 gcgtgaatga acagccgggc ctgaaggcag aagcgttgct gtactatggc tttgtcctca
      661 agctgagcaa acgcgaccag gaagcagcca acctgatgca aatgaacacg acactggcgc
      721 aggcgccggc gttgaacatt ttcttcctct ccaccctgca atacatttcc ggcaacaatg
      781 aagaagcgat gaaagccttg tcggcattcc ccaaaaacaa gattgaactc cccttccggc
      841 acatcagcta cctggaaggg cgtgaaaaaa tcaaccgcct cgaccccgat gcctatgttc
      901 ccttcacgca atttctccgg tcttccaatt tcaagaacaa caagagagac gtctgcctca
      961 aactctccta tcactacttc atgctgaacg acaaggatcg ttatcactac tatctccagc
     1021 tcatcaacag ctaccccaaa tcaaaaatgg atcgtgacaa ggaggccgat gtggaaagtg
     1081 cccgtggcta cgatccgtag cccgatattc tgagatcacg attcctggtg tcaggcggtt
     1141 atttcagcag ggccaagacc atcctgcaat ccattgtatt tgcaagcctg gtcaacaagg
     1201 cttaccaaac agagtattgc ctgcttatgg ccaaagtggc gttggccgaa cgcagaacgg
     1261 aagatgccat tgccttttgc aacaaagcca ttgagctcgg cagggaaaga aaagaacact
     1321 atgcggcgga agcagccctg gtagccggca ttgccgccca acaaaaaaac agcattaacc
     1381 aggcgctgca gttctggaag atggccatgc aaattgatgg gcagggcgat gtttacatcg
     1441 agaacatcca caaaatagcg aagcagaaaa tcgcgatggc caacagcggc tcgccccact
     1501 gataatattt tccaataatc aaccagactc tacctgtcac acttaattca caggtagcgc
     1561 ccaatctgtg cgatcgtatc ttcactatct ttctcctcat g
//
LOCUS       DATIQF010000632         3666 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_268791,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000632 DATIQF010000000
VERSION     DATIQF010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3666
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268791"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..839)
                     /locus_tag="VLL95_10745"
     CDS             complement(<1..839)
                     /locus_tag="VLL95_10745"
                     /inference="COORDINATES: protein motif:HMM:NF013570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase-related protein"
                     /protein_id="HSR39381.1"
                     /translation="MMTAAAIRQQFLDFFASKGHSIVPSAPIVVKNDPTLMFTNAGMN
                     QFKDFFLGHKQPASTRVADTQKCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYF
                     KTEAIAWSWELLTEVYKIPKDRLYVTVFEGDEKEGLPKDQEAWQEWSKWISQDRILLG
                     NKKDNFWEMGDTGPCGPCTEIHVDCRPDAERAQQDGKELVNNDHPQVIEIWNNVFIQF
                     NRLKDGSLESLPAKHVDTGISASQTICLSLATMLTLRPISVMSYDCHSPGFLATFSLG
                     LIKP"
     gene            1019..1990
                     /locus_tag="VLL95_10750"
     CDS             1019..1990
                     /locus_tag="VLL95_10750"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HSR39382.1"
                     /translation="MKKVKYFYNTHTLRYEKLVTPLRVKLLRVFGFIATALTTSFIIV
                     LIGQKYFPSANERSLQQENANLRSSLRLLDQQLEELEQRMAALEKRDNSVYRSIFEAD
                     PVPDSARAKLLEEIAELKKVRSMGQDELITSIANQLQRLNNRMQFQQTSFVTIEKMID
                     RKEDLLAAIPAIQPVSNQDLERVASGFGYRIDPIYKVPKMHAGLDFTAPTGTPIYATA
                     DGTVSEAGFNTGGYGNHVVINHGYGYETLYGHMVRIKARRGQKVKRGEVIGWVGNTGK
                     STGPHLHYDVIKSDRKIDPIYFFYNDLSPEQYNRLLQLAATRNQSFD"
     gene            2004..2510
                     /locus_tag="VLL95_10755"
     CDS             2004..2510
                     /locus_tag="VLL95_10755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39383.1"
                     /translation="MKQLEELLLSPRQMHHAQMMSAWVGISSKRFDALAALVYGDDPV
                     LAQKAAWPMTYISEAHPEWIQKHLPDLLAATKKPGVHTAIVRSVVRSLQFVSIPQSLH
                     GEVMDSCFRYIEDISEKPAVKAFALTVLHHLSKQYPDILPEIKEIVASRMDLETPAFR
                     VRARVFCR"
     gene            complement(2546..3250)
                     /locus_tag="VLL95_10760"
     CDS             complement(2546..3250)
                     /locus_tag="VLL95_10760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39384.1"
                     /translation="MRIVAPVGYHHLFSVYSLSEFKTHMCHLFPFLLSLLVVTSCFET
                     KSQPALYLKTGVGVAGDAGLEYIGPNLYAGVAVKTSRNVTLDFDLQYFPAKLRSDGSN
                     AYYYGDWRQKSFSFGPTIYWGKYIHKGVYTGFGITYQQRTNYFQSSWTFIDDTLSYPT
                     LNLRVGYNFFPSNRRSSFFIELNLTGPYSETYGNHFYLEILSQLSLNIGYRIGWRKEN
                     PADDKSHHKLQLTKPY"
     gene            complement(3482..>3666)
                     /locus_tag="VLL95_10765"
     CDS             complement(3482..>3666)
                     /locus_tag="VLL95_10765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39385.1"
                     /translation="ELEVQLHIHFLLQLKQLPGHITSAPIMDKLARSEEQKIRKLIRG
                     LHEDLQYDLLKNLGVA"
BASE COUNT          973 a          931 c          837 g          925 t
ORIGIN      
        1 ggctttatca aacccaatga aaatgtagcc aggaaacccg gcgaatggca atcgtacgac
       61 atcacgctga ttggccgcag ggtaagcatt gtagccaatg acaagcaaat tgtttgtgat
      121 gctgaaatac cggtatccac atgtttggca ggcagtgatt ccaggctgcc atctttcagg
      181 cggttgaact ggatgaatac gttgttccat atctcaatga cctgcgggtg atcgttgttc
      241 accaactcct tgccatcttg ctgtgctctt tccgcatcgg ggcggcaatc cacatgtatt
      301 tcagtacagg gtccgcaggg gccggtatcg cccatttccc agaaattgtc ctttttgttg
      361 cccagcagga tcctgtcttg gctgatccat ttgctccact cctgccatgc ttcctggtct
      421 ttgggcagcc cttccttttc atcaccttca aacacggtta catacaggcg gtctttcggg
      481 atcttgtaca cttctgtgag cagttcccag ctccaggcta tggcttctgt tttgaagtaa
      541 tcgccaaagc tccagttacc cagcatttca aacatggtgt ggtggtaggt atccacccct
      601 acttcttcca ggtcgttgtg cttgccgctt acccgcaggc atttctgggt atcggccacc
      661 cgtgtgctgg caggttgctt gtggcccagg aagaaatcct tgaactggtt catgcccgca
      721 ttggtaaaca tgagcgtagg atcgttcttc accacaatgg gtgcgctggg cacaatgctg
      781 tgtcctttgg aggcaaaaaa atcgaggaac tgctggcgta tggctgcggc ggtcatcatt
      841 cgtaatgctg tttatggtta tccggccatc caaaaacaat cgttcttaca actgcgaaag
      901 gctatttttg acggccatac ccgatgggcg ggcaaaggta aagattagca gccgagcccc
      961 gcttcatttt tgcactttcc acacctgcca ttccctgcca atatcagaaa cagctccgtt
     1021 gaaaaaggta aaatacttct ataataccca tacgcttcgc tatgaaaaac tggtaacacc
     1081 gctgcgggtg aaactgctgc gggttttcgg gttcatagcc actgccctta ccacctcctt
     1141 tatcatcgta ctgattggcc agaaatattt tcccagtgcc aacgaacgct ccttgcaaca
     1201 ggaaaatgcc aacctgcgca gcagtctccg cctcctcgac cagcaactgg aagaactgga
     1261 gcagcggatg gcggccctgg aaaagcgtga caacagcgtt taccgcagca tcttcgaagc
     1321 cgaccccgtg cccgacagcg cccgggccaa actgctggaa gaaattgcag agctgaaaaa
     1381 agtgcgcagc atgggccagg atgaactcat caccagcatt gccaatcagc tgcagcgcct
     1441 gaacaaccgg atgcaattcc agcaaacttc ttttgtgacc attgaaaaga tgattgaccg
     1501 gaaagaagac ctgctggcag ccattcctgc cattcagccg gtaagcaacc aggacctgga
     1561 gcgggtggcc agcggttttg gctaccgcat cgatcccatt tacaaagtgc cgaaaatgca
     1621 tgccggcctc gattttacag cacccaccgg tacgcccatc tatgccacag cagatggaac
     1681 agtgtctgaa gccggcttca acaccggtgg ctatggcaac cacgtggtca tcaaccatgg
     1741 atacgggtac gaaaccttgt atggtcatat ggtccgcatc aaagcccggc gcggacaaaa
     1801 ggtgaagcgc ggcgaagtga taggctgggt aggcaatacc ggcaaaagca ccgggccaca
     1861 cctgcattac gatgtgatca aaagcgaccg caagattgat ccgatttact ttttctacaa
     1921 cgacctgagc cccgagcaat acaatcgcct gctgcaactg gcagccaccc gtaaccaaag
     1981 ctttgattga ttcaaccctg gttatgaaac aactggagga actgttgctg agcccccgcc
     2041 agatgcacca tgcgcaaatg atgagtgcat gggtaggtat ttctagcaag agatttgatg
     2101 cgctggcagc attggtttac ggtgacgatc ccgtattagc ccaaaaagcg gcctggccta
     2161 tgacctacat ctctgaagca cacccggaat ggatacagaa acatttgcct gacctgttgg
     2221 ctgccaccaa aaagcctggt gtgcacaccg ccattgttcg aagcgttgtt cggtcactcc
     2281 aatttgtaag cattccgcag tcactgcatg gcgaggtaat ggacagctgt ttccgctaca
     2341 ttgaagacat cagtgaaaaa cctgctgtca aagcatttgc gctgactgta ttgcaccatt
     2401 taagcaaaca atacccggac attttgcctg agatcaaaga aatagtcgct tcccggatgg
     2461 acctggaaac acccgcattc agggtaaggg ccagagtctt ttgtcgttag taactaggat
     2521 caactccata gtacaggcac attaactaat atggcttcgt gagctgaagt ttgtggtggc
     2581 ttttgtcatc cgccggattt tcctttcgcc acccaatgcg atacccaata ttaagtgaga
     2641 gttgagacag aatttcaagg taaaagtgat tgccatacgt ttcactatat ggcccggtta
     2701 gattaagctc aataaaaaat gaactcctcc tgttggaagg gaaaaagtta taccctaccc
     2761 ttagattaag ggtgggataa ctgagcgtat cgtctataaa tgtccacgat gactgaaaat
     2821 aattggttct ttgctgatat gtaattccaa aacccgtata aactccctta tgaatgtatt
     2881 taccccaata aatagtaggg ccgaatgaaa aactcttttg gcgccaatct ccataataat
     2941 aagcattact gccatcagac ctcaatttgg cagggaaata ttgcagatca aaatcaagag
     3001 taacatttct acttgttttc accgctacac cagcatataa atttggacca atatactcga
     3061 gccccgcgtc ccccgcaacg ccgaccccgg ttttcaggta tagcgcaggt tgagacttgg
     3121 tctcaaaaca tgaagtaaca accaaaagtg ataagagaaa tgggaaaagg tggcacatgt
     3181 gtgtcttaaa ttctgacaag gaatataccg aaaataggtg atgatacccc accggtgcaa
     3241 caattctcat tttcctttaa aagatttcgc ttcaattatt caccgaaaaa tttcagttgt
     3301 aatttaatct atcagcatat ccttcgcatt atctttcaaa tgattgcttc accaagtagt
     3361 atcaatttca tactttctag gtttcgattt gagctagcat aaacagacag atacattcaa
     3421 ccaacttttg ccggataacg aaaccttttt gaagcgcaac aagcgaacct gttcgtattg
     3481 ttcaggcaac ccctaaattc ttcagcaaat cgtactgcaa atcctcgtgc aggccacgaa
     3541 tgagtttacg aattttctgt tcctccgatc tcgccaattt gtccatgatg ggcgccgatg
     3601 tgatgtggcc gggcagttgc ttcaactgaa gcagaaagtg gatgtgcagt tgcacttcca
     3661 gttctt
//
LOCUS       DATIQF010000633         5320 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_101109,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000633 DATIQF010000000
VERSION     DATIQF010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5320
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101109"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..232
                     /locus_tag="VLL95_10770"
     CDS             <1..232
                     /locus_tag="VLL95_10770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39386.1"
                     /translation="NLSSLNAIYELELQDTNNHLKVMNKFFGNLTAVSESMGGSIEDA
                     KLAQAQINQLASNLSKLNNVYGNMLSAMQGRG"
     gene            340..1860
                     /locus_tag="VLL95_10775"
     CDS             340..1860
                     /locus_tag="VLL95_10775"
                     /inference="COORDINATES: protein motif:HMM:NF023504.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GldM family protein"
                     /protein_id="HSR39387.1"
                     /translation="MALPKEPRQKMINLMYLVLTALLALNVSNEILNAFKTVDNSLLN
                     SNDVIKSSNQVISASLAEQGKKPELASKVAIWKPKADSAIGLANAMAAYIEDLKNRLK
                     QESDLQVQDGVEVYKEDDLDAATRLMDVKGEGPKLQNALQQYMDNLKKLIPADLQAKM
                     PKLPIDLSVPKSNNRGNNTWTRAYFNMTPSVAGLTILSKFQNDVLRSGNLVAEFAQNQ
                     IGKVEVVLDKFEILTSQNSTYLLPGQTLEVKAGIGAFSSAAKPTITINGVSQVANDSG
                     FARYTTTIGGGGSGSVPVTVSFKDPNTGETVQKSTTVNYTVGQASGASIFLEKMNVMY
                     VGVDNPLTISSGSGKRENAIVSFTGGSISSAGGDKYVAKPTETGPATVSITVDGKTFP
                     FPIRCKLLPDPIALVGTLKGGRVQSAQFKASGGVRAALQDSEFDAQFQVVSYTLAGNG
                     AGFQQYTPVQINGAQWGGNAVITQAKPGSSIFLDDIIVRGPDGRNRKLPPIAFQLQ"
     gene            1954..2976
                     /gene="gldN"
                     /locus_tag="VLL95_10780"
     CDS             1954..2976
                     /gene="gldN"
                     /locus_tag="VLL95_10780"
                     /inference="COORDINATES: protein motif:HMM:TIGR03523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility protein GldN"
                     /protein_id="HSR39388.1"
                     /translation="MNRIAIVSFLLAALVVNSATESFGQTRRRAPQRRTNTNRTTAKP
                     EPTPEPVVVDTPKVVAKVEEKDTIPLKQVSVSRRTNTSIQGDLVKDKTPLPYDHLRVD
                     DVVYKQVIWRELSTKEKMNLPFRYEADEDNGNQRFFNILLKHIKEGDITAWNNVDDRF
                     TTPLTVDEVATMLAGKKYTMSKIDYEKDPDGSKGIMKDTVIRDEFDENSITAYRIKEE
                     VIFDRETSRLFFRILGIAPVKAIYNDDGSFRDAYPLFWLYYPDLRPILSKYEAYNPRN
                     MGNRMSWEEIFESRYFTSYIYKSTINNPFDKPLAAFISDPLMRLLEGDNIKETIFNWE
                     QNQWSY"
     gene            complement(3019..4845)
                     /locus_tag="VLL95_10785"
     CDS             complement(3019..4845)
                     /locus_tag="VLL95_10785"
                     /inference="COORDINATES: protein motif:HMM:NF020048.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HSR39389.1"
                     /translation="MTPETFRKIGPTIPHQPGVYKYFDAAGTIIYVGKAKDLRKRVSS
                     YFNKQFVGYKTHELVQRIHRIEFTVVNTEQDAFFLENALIKELQPKYNIDLKDDKTYP
                     YIVIKKEPFPRVFLTRKKINDGSEYLGPFTSVARVRELLQFIKQHIQLRTCKLPLSQK
                     NITAKKFKVCLEYHLGNCKAPCIGLQTEEDYDEGLQRLKQVLKGRLSGVMQHYKEELQ
                     LHVTNLEFEKAQIIKKKIEHLEQYQSKSVVVSQSVKDVDVFSLLKDGDTAYVNYLMVR
                     NGTIVQTHTLQLSPQLDEGDGEVLSFGMARIREAFGSDATEIVTPIPLDYPEPGTHIT
                     LPKSGDKKKLLDLSFKNVALFKDELKRKRMLNIEEKTEEQLLDILEELQSALKLPEIP
                     MHIECFDNSNFQGSYPVSAMVCFKNGAPSKNDYRRFNVKSVTGINDFATMKEAVYRRY
                     KRLADDHAELPQLVIIDGGKGQLNAALEALDALSLTGQMTVVGLAKNIEEIFFPGDNE
                     SVKLDWQSEALKLVRRIRDEVHRFGITFHRLKRSKGTFKNELETIPGIGKQTATSLLR
                     HFKSVARIKAADATALEAVIGVAKARLVSEYFAGAESQKKSG"
     gene            complement(4895..>5320)
                     /locus_tag="VLL95_10790"
     CDS             complement(4895..>5320)
                     /locus_tag="VLL95_10790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39390.1"
                     /translation="TPFAIIRIVKTDGTTTDSGLVDKSVFRQATMPFAAIDPNSNSLK
                     DKYEESSFQDLSLEAVTFMIVAKDTTLPLQEATVLLHPETKRVKRVMQRKVIDAADST
                     ISQQLLWIHNQRCQIAEIISKKDGTQYTRSIAYVWDAPL"
BASE COUNT         1337 a         1276 c         1268 g         1439 t
ORIGIN      
        1 gaacctgagt tctttgaacg ctatttatga actggagttg caggacacga acaaccacct
       61 gaaagtgatg aataagttct tcggcaacct cactgcagtt tcagaatcaa tgggcggaag
      121 cattgaagac gcgaagctgg ctcaggcgca gatcaatcag ctggcctcca acctgtccaa
      181 attgaataat gtatatggca atatgctcag cgctatgcag ggcagaggct aatcattgtt
      241 tcgaatacca acccgtaatt ggctggccgg aaaatgatga tgattcgtac ttgtaatttg
      301 aactgactaa gcttattaat ccgaaaatac ccctaacata tggctttacc taaagagcca
      361 cggcagaaga tgatcaacct gatgtacctg gtactgacgg cacttctggc gctgaatgtc
      421 tcaaacgaaa tattgaatgc ctttaaaacg gtggataata gcttgttgaa ctctaatgat
      481 gtcatcaaga gttcgaacca ggttatctct gcttcactcg ctgaacaagg caaaaagcct
      541 gaactggcct ccaaagtggc catttggaaa ccaaaggcgg actctgccat tggtttggca
      601 aacgcgatgg ctgcttacat tgaggatctg aaaaatcgat tgaagcagga atcagatctc
      661 caggtacagg atggcgtgga agtatataag gaagatgacc tggatgctgc cacccgactg
      721 atggatgtaa aaggcgaggg ccccaaactg caaaatgcgt tgcagcagta catggacaac
      781 ctgaagaaac tcatccctgc tgatctgcaa gccaaaatgc caaagttgcc catagacctt
      841 tctgttccca agtcgaacaa ccgtggcaat aatacctgga caagggccta cttcaacatg
      901 accccaagtg tggcgggcct caccatcctc agcaagttcc aaaacgatgt acttcgcagc
      961 ggcaacctgg ttgctgaatt tgctcagaac cagattggca aagtggaggt ggtactcgac
     1021 aaatttgaaa ttcttaccag ccagaattct acctacctgt tgccgggcca aacgcttgaa
     1081 gtgaaggcag gtattggtgc tttcagctca gctgccaaac ccactattac cattaacggc
     1141 gtttcgcagg tagccaacga tagcggcttc gcccgctata ccactaccat tggcggtggt
     1201 ggttctggta gtgttccggt tactgtttct ttcaaggatc caaacaccgg cgaaactgta
     1261 cagaagagca ctactgtaaa ttataccgta ggccaggcgt ctggcgcctc catattcctt
     1321 gaaaaaatga acgtaatgta tgttggcgtt gacaacccgc tgaccatttc ttcaggaagc
     1381 ggtaagcgtg aaaatgccat agtttctttc accggcggtt ccatttcttc tgctggcggc
     1441 gacaaatacg ttgcaaagcc tacagaaaca ggaccggcta ctgtatcaat cacggtggat
     1501 ggcaagacat tccccttccc aatacgttgc aaactgctgc ctgatcctat tgccctcgtg
     1561 ggtactctga aaggtggccg tgtgcagtca gcccagttca aggccagtgg cggtgttcgt
     1621 gcagcgctgc aggattctga atttgacgcc cagttccagg tggtgagcta tacgctggcg
     1681 ggtaacggtg ccggcttcca gcaatacact cccgttcaga tcaacggggc acagtgggga
     1741 ggcaacgcgg tgattaccca ggcaaaacct ggcagttcta ttttccttga cgatattatt
     1801 gtacgcggac ccgacggcag aaacagaaag ctgccaccca tcgcattcca actgcaataa
     1861 tgccggatat aatttcgttt ttacagctgc aggcatttgt gtgagcaaag cctgcagctt
     1921 tatcagtaaa agatgataaa ccttggttga attatgaacc ggattgcaat tgtatcattc
     1981 ctgttggcag cactggtagt gaatagcgcc acagaaagct ttggccaaac ccggcgcagg
     2041 gctcctcagc gtcgtaccaa taccaaccgc accaccgcaa agccagagcc aacccctgaa
     2101 cctgtggtag tagatactcc caaagtggtg gccaaagtag aggaaaagga tactattcca
     2161 ttgaagcagg tatccgtgag ccgacgtacc aacacttcta tccagggcga tttggttaag
     2221 gacaaaactc cccttcctta cgaccacctg cgagtagatg atgtagtgta caagcaggtg
     2281 atttggcgcg aattgagcac caaggaaaaa atgaacctgc ccttccgcta tgaagccgat
     2341 gaagacaatg gcaaccaacg tttcttcaat attcttctca agcatatcaa agaaggcgac
     2401 attacagcat ggaacaatgt ggacgaccgt tttaccactc ccctcactgt ggatgaagtg
     2461 gcaaccatgc tggcaggtaa gaaatacacc atgtccaaaa tcgactacga aaaggatcct
     2521 gatggctcta aaggaatcat gaaggatact gtaattcgtg acgagtttga cgagaactca
     2581 attacagcgt atcgaatcaa agaagaagtg attttcgata gggaaaccag ccggctgttt
     2641 ttccgtattc ttggcattgc tcctgtgaaa gccatttaca acgatgatgg ttccttccgt
     2701 gatgcttacc ccttgttctg gttgtattac cctgatctgc gtcccatcct ttccaagtat
     2761 gaggcctaca atccgcggaa tatgggcaac cgtatgagtt gggaagaaat tttcgaaagc
     2821 cggtacttca ccagctatat ctacaagtct accatcaaca acccgttcga caagccgctg
     2881 gccgctttca tttccgatcc gctcatgcgc ttgcttgaag gtgataatat taaggagacc
     2941 atattcaact gggaacaaaa ccagtggtca tactaagaca gcaaacaaaa aaagagaagc
     3001 ggctgattca catttggatc agccgctttt tttttggctt tccgcaccag caaaatattc
     3061 acttaccagc ctggcttttg ccacaccaat caccgcctca agggcagttg catcggccgc
     3121 tttgatcctg gccactgatt tgaaatgacg aagcaatgaa gtggcagttt gttttccaat
     3181 gcccgggatg gtttccaact cattcttaaa agtgcctttg cttcttttca gccggtgaaa
     3241 ggtgatgccg aatcgatgca cttcgtcgcg gattctcctc accagcttca gggcttcgct
     3301 ttgccagtcg agtttcacac tttcgttgtc gcccgggaaa aatatttcct cgatgttctt
     3361 cgcaagtcct accacggtca tttgcccggt gaggctgagt gcatccaagg cttcaagagc
     3421 cgcattcaat tgccctttgc cgccatcaat gatcaccagt tgaggcagct cagcatggtc
     3481 atctgccagg cgtttgtatc gcctgtacac ggcctctttc atggtagcaa agtcgttgat
     3541 gccggttacg gatttcacat tgaatcggcg gtagtcgttt ttagaaggag ctccattttt
     3601 gaaacatacc atggcagaaa ccgggtaact gccctggaag ttggaattgt caaaacactc
     3661 gatgtgcatg ggaatttccg gcagcttgag tgccgactgc agctcctcca aaatgtccaa
     3721 cagttgttct tctgttttct cttcgatgtt gagcatgcgt ttccgcttta gttcatcttt
     3781 gaacaatgcc acgttcttga atgacaagtc gaggagtttc tttttgtcgc ccgattttgg
     3841 tagggtgatg tgtgtgccgg gttccgggta atcgagaggg atgggcgtta caatttcagt
     3901 agcatcactt ccaaaagctt ccctgatgcg ggccatgcca aaagacagca cttcgccatc
     3961 gccctcatcc agttgcgggc ttaactgcag cgtatgggtt tgcacaatgg tgccgtttcg
     4021 caccatcagg tagttgacat acgctgtgtc gccatccttc agcaaactga aaacatccac
     4081 atcctttacc gattgactta ccaccacact cttcgactgg tactgttcaa ggtgttcaat
     4141 ctttttcttg atgatctgtg ctttttcaaa ttccaggttg gtaacatgga gctgcaattc
     4201 ttctttgtaa tgctgcatta ccccgctgag ccttcctttg agcacctgtt tcaatcgctg
     4261 caaaccttcg tcgtaatctt cttctgtttg caatcctatg cagggcgctt tgcaattgcc
     4321 caggtggtat tcaaggcata ccttgaattt tttggctgta atattctttt gggaaagggg
     4381 tagtttgcag gtgcgcagtt gtatgtgctg tttgatgaac tgcaacaact cccttaccct
     4441 tgccactgac gtaaaaggcc ccaggtattc gctgccatcg tttatttttt ttcgcgtcag
     4501 gaataccctt ggaaaaggtt cttttttgat gacgatataa ggatatgttt tgtcgtcttt
     4561 aagatcaata ttgtatttgg gctgcagttc ttttatcagc gcattttcca ggaagaaggc
     4621 atcctgttcg gtattgacca ccgtgaattc aatgcggtga atgcgctgca ccaattcatg
     4681 ggtcttgtat cccacgaact gcttattgaa atatgagctt accctttttc ggaggtcttt
     4741 ggctttgcct acataaatga tggttcctgc cgcatcgaag tatttgtaaa ctccgggctg
     4801 gtggggaatg gttggcccta tttttctgaa tgtttcaggg gtcatgttcc ggtgcgctgg
     4861 cggttagttg ccggccagta tgactattgg ttggttacaa tggtgcatcc caaacatagg
     4921 caatactgcg ggtgtattga gtgccgtcct ttttactaat gatctccgct atctggcagc
     4981 gttggttgtg tatccacagc aattgctgtg atatggtact gtcggctgca tcgatcactt
     5041 ttctttgcat cactcttttt acccttttgg tttcagggtg cagaagcacc gtggcttcct
     5101 gcaaaggcag cgtggtgtct ttggccacaa tcataaaagt gacggcttcc agggaaagat
     5161 cctggaagga agattcttca tatttatcct tcagtgaatt tgaattggga tcaatggctg
     5221 cgaagggcat ggtggcctgc ctgaatactg acttgtcaac caggcctgag tcggtagtgg
     5281 tgccatctgt ttttacaatg cgtatgatgg caaaaggcgt
//
LOCUS       DATIQF010000634         2706 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_253278,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000634 DATIQF010000000
VERSION     DATIQF010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2706)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2706)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2706
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253278"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(112..1353)
                     /locus_tag="VLL95_10795"
     CDS             complement(112..1353)
                     /locus_tag="VLL95_10795"
                     /inference="COORDINATES: protein motif:HMM:NF014471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate transporter"
                     /protein_id="HSR39391.1"
                     /translation="MKLLRHIPFLKMVFWHSLTAFGGPQGHYGMMVKRFVNRRHDVTE
                     AELLEFTAFVQLLPGASSTQTLTLIGYKRGGAPLALLTLLIWVLPAGILMSLLSFLLE
                     YFDQRSVDGEIFKFIQPMAVGFLAFGAFRVGRVSLKNLITVVLAVLSAGLTYVFFRTP
                     WVFPILLVVGGIITNFSKKRIPPMDTSRKKIPWSNLWLFFGIFILLGVLSEWSRKQQV
                     KLGYQAPQYRVWNLSENFYRFGSLVFGGGDVLVPLMYEQFVVRPKGDNQYMTSQEFLT
                     GSGMVRAIPGPVFSVAAFHGGMAMRQWGRDWQALGCVAGLLFIFLPSALLVLFFFPIW
                     VYLKKYAVVYRSLEGINAVVVGIMTASIFYVMKDIAIDAVHLVPLVNIVVMAGTFLLL
                     TFTRLPSPIVVLLCLLLGFVF"
     gene            1408..2547
                     /gene="corA"
                     /locus_tag="VLL95_10800"
     CDS             1408..2547
                     /gene="corA"
                     /locus_tag="VLL95_10800"
                     /inference="COORDINATES: protein motif:HMM:TIGR00383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015087 - cobalt ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HSR39392.1"
                     /translation="MQNTITKALSHLQYRQLLKALARRRTRAVVKPFTPKPAKPSKPH
                     DITIIDYTQKAIEQTKVESIKEAFHYHKTTTTTWINVDGLSKKEVVALRQHYGIHELI
                     QEDIISYGQRPKVDEIDDHLYALLNMLFVEKETGIIEHEQISIVLGKNYVISIQEYAT
                     RDVFDPVRKRLRMSTSKEREKSADYLFYALIDVIVDSYLLVIEDIASHIESIEEQILS
                     RTTKHTFQRISQLRKDIILLKRNIAPVRDLVASLVRSDSDLLQERTTKYFKDVYDHVV
                     QANDLLDNYRDLIMGLQDMYVNNINLRMNEVMKTLAIITAIMAPATVIGGIFGMNFDV
                     IPYAHHQWGFYGTIAVMLIIPVVMILWFVKRGWFQKDYPEQQSLF"
BASE COUNT          867 a          695 c          533 g          611 t
ORIGIN      
        1 atgatccgcc agcaaattcc catcaggtac ctggtaccag atgctgcggc caaagaaatc
       61 atggacaaca attactaccg ataattttta atattaaata ttcttttaat attaaaatac
      121 aaatcccaac aacaaacaaa gcagcaccac tatgggtgat ggaagcctgg tgaatgtcaa
      181 tagcaggaag gttccagcca tcactacaat gtttaccaaa ggcaccaggt gaaccgcatc
      241 aatagcaata tccttcatta cataaaagat ggatgcagtc ataatgccca ccactactgc
      301 attgatgccc tcaagggatc ggtagactac ggcgtatttt tttaaataca cccagatcgg
      361 gaaaaagaac agcaccaata aggcgctcgg tagaaaaata aaaagcaatc cggctacgca
      421 acccaaggct tgccaatcac gtccccattg ccgcatggcc atacctccat ggaacgcagc
      481 caccgaaaaa accggcccgg gaatagcccg aaccattcca cttccagtca ggaattcctg
      541 gctggtcatg tattgattat cacccttggg gcgcactaca aactgttcgt acatcagcgg
      601 caccaaaaca tcgccgccgc caaacacaag gcttccaaaa cgatagaagt tctccgacaa
      661 attccacacc ctgtactggg gcgcctggta tcccagtttc acctgctgtt tcctcgacca
      721 ttcagacagt acgcccaaca aaatgaaaat gccgaaaaac aaccagaggt tcgaccatgg
      781 gatctttttc ctggaagtat ccatcggtgg gatgcgtttc ttgctgaagt tggtaatgat
      841 gcctcccacc accaacaata tcgggaacac ccagggagta cggaagaaaa cataggtgag
      901 accggcactc agaacggcca gcaccacggt gatcaggttt ttcaaactta cccttcccac
      961 cctgaaagcg ccaaaggcca ggaatcccac cgccatgggt tgaatgaatt tgaaaatttc
     1021 accatcaacc gaccgctgat cgaaatactc cagcaggaaa cttagtaaac tcatcaggat
     1081 gccggctggc aatacccaga tcagcagggt cagcaatgca agaggggcgc ctccccgttt
     1141 gtaaccaatc agggtgagcg tttgcgtact gctggcaccc ggcaacaatt gcacaaaagc
     1201 agtaaattcc agtaattcag cttctgttac atcatgcctc cgattcacaa accttttcac
     1261 catcatgccg taatgaccct gcggcccacc aaaagcagtg aggctgtgcc aaaaaaccat
     1321 ttttaaaaaa gggatatgac gcaataactt catcggcagt gaaaggatat catcacaact
     1381 cttgcaatcc gtaaatatac tttccttatg cagaacacca ttacaaaagc cttatcccac
     1441 ctgcaataca gacaattgct aaaagcgctg gccagaaggc gcacccgggc ggtggtaaaa
     1501 ccctttacgc ccaaaccagc caaaccttcc aaaccacacg acatcaccat cattgactac
     1561 acccaaaagg ccatagaaca aacaaaagtg gaaagcataa aagaagcttt ccattatcac
     1621 aaaaccacaa caacaacctg gatcaatgtt gacggtctct caaaaaaaga agtggttgcc
     1681 ctcagacaac attatggcat acatgaactg atacaagaag atattatcag ctatggtcag
     1741 cggcccaagg tggatgaaat tgatgatcat ctctatgcgc tgctcaacat gctgttcgta
     1801 gaaaaagaaa ccggcatcat agaacacgaa cagataagca tcgtgctggg aaaaaactat
     1861 gtcatcagca tacaagaata tgcgaccagg gatgtatttg accccgtacg aaaacgcctc
     1921 cgcatgtcta ccagtaagga aagagaaaaa tcagccgatt atcttttcta tgcgctgata
     1981 gatgtaattg tagacagcta cctattagtc attgaagaca ttgcctcaca cattgaaagt
     2041 atagaagaac aaattctttc aaggactacc aaacacacct ttcaacgtat ttcacaattg
     2101 cgaaaagaca tcatcttact caaacgaaac attgctcccg tacgagacct cgtagcttca
     2161 ttagtaagat cggatagtga tttgctgcaa gagcgaacca ctaaatattt caaggatgtt
     2221 tacgatcacg ttgtgcaagc caacgatctg ctggacaatt accgagatct catcatggga
     2281 ctacaggata tgtatgtaaa caacatcaac ctccgcatga atgaagtgat gaaaacgctg
     2341 gccattatca ccgccataat ggctcctgcc acagtaatcg gaggaatatt cggaatgaat
     2401 ttcgatgtca ttccttatgc gcatcatcaa tggggatttt acggaaccat agcagtcatg
     2461 cttatcatcc cggtcgtaat gatcctgtgg tttgtaaaac ggggttggtt ccaaaaagac
     2521 taccccgaac aacaatcatt gttctgaagc cttctttttg aaaataggaa ccgtactgca
     2581 aggctctccg tacatgatgc ttttggctac cggccggagc ttagccgtta tatgcaagta
     2641 tgcttcatta ctgattggca attcgccgca gcccttcacc actacccttg catcttttaa
     2701 atcagt
//
LOCUS       DATIQF010000635         2815 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_162163,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000635 DATIQF010000000
VERSION     DATIQF010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2815
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162163"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..683)
                     /locus_tag="VLL95_10805"
     CDS             complement(<1..683)
                     /locus_tag="VLL95_10805"
                     /inference="COORDINATES: protein motif:HMM:NF014554.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39393.1"
                     /translation="MKIALDMMGGDFAPEEAVKGFKRYLTQHGKQGTYLQLLGIASQI
                     QPLLDAQSIDASSYVVIDCPEVIGYDEHPVKALKGKPQSSIAVGFGMLAAGKTDAFIS
                     AGNTGAMLVGSMFSLKPTEGVLRPTIATIIPREGGKTGLLLDVGINSDCKPENLAQFA
                     VMGSTYARLILGIDNPTVGLLNIGEEEGKGNLLAQAAYPMLKENTHIQFIGNVEGRDI
                     LEDKADVIV"
     gene            complement(755..949)
                     /gene="rpmF"
                     /locus_tag="VLL95_10810"
     CDS             complement(755..949)
                     /gene="rpmF"
                     /locus_tag="VLL95_10810"
                     /inference="COORDINATES: protein motif:HMM:NF013908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HSR39394.1"
                     /translation="MPNPKRRHSQQRSAKRRTHYKAEAATLSVDSATGETHVRHRAHV
                     SEGKLYYKGQVVAEKSPVKK"
     gene            complement(986..1534)
                     /locus_tag="VLL95_10815"
     CDS             complement(986..1534)
                     /locus_tag="VLL95_10815"
                     /inference="COORDINATES: protein motif:HMM:NF014657.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HSR39395.1"
                     /translation="MSGRREYDIAFVGLKPGEHLFQYEIEDKFFKDYDQQDFNNVHAT
                     VKVNLDKKNGFFLLKFDIGGSLEVVCDRCGNMLPLQLWDEFKVVVKLVENPDEMNEQE
                     EDPDVYYIDRNESHLHLADWIYEFINLSIPMTRMCSDEQMGGPYCNKEVLEKLKNMQP
                     NDNNAQTIWKGLEKFKGLEDKE"
     gene            1774..2277
                     /locus_tag="VLL95_10820"
     CDS             1774..2277
                     /locus_tag="VLL95_10820"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HSR39396.1"
                     /translation="MKRINSFCSKLVLLVSCLLLVQVLGYTQPGDIGDTAPEISLPDP
                     DGNIIKLSDLRGKVVLVDFWASWCGPCRFSNKRIKPLYENYKPAGFEILGVSIDNDID
                     AWKRAIKSDKITWLQVNQQGNWKSEVALQWNIEALPTTILIDREGKILAVDPSEEHLE
                     KILKKVL"
     gene            complement(2285..>2815)
                     /locus_tag="VLL95_10825"
     CDS             complement(2285..>2815)
                     /locus_tag="VLL95_10825"
                     /inference="COORDINATES: protein motif:HMM:NF014672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE family protein"
                     /protein_id="HSR39397.1"
                     /translation="KGLLFIASLLFFSFPVFAQQGLNPEISPYGQVSSVPRVSLKADP
                     SMHYKIVIEVNNSDTSTPAISQPVELVARLVNLLALDGVTKSKREIAVIFHNAGSYCI
                     QTDEAYNRKYGRSNPNKEALEKLAAAGVNFYVCGQSTVKRNINPAEILPQVRIATSFL
                     TSYTTFQLQGYSALKF"
BASE COUNT          720 a          662 c          650 g          783 t
ORIGIN      
        1 catactatta catcggcctt gtcttccagg atatccctgc cttctacgtt gccaatgaat
       61 tggatatgcg tattttcttt cagcatggga taggcagctt gtgccagcag atttccttta
      121 ccttcttctt cgccgatatt caacaagccg acggtgggat tgtcgatgcc cagtatcagg
      181 cgggcatacg tggagcccat aaccgcgaat tgggcaaggt tctccggttt gcaatcactg
      241 ttgatgccta catccagcaa caagcctgtt ttgccacctt cccttggaat aatggtagca
      301 atggtaggac gcaaaacgcc ttccgttggc ttgagtgaaa acatactgcc caccaacatg
      361 gcaccggtat tcccggcgct gatgaaggca tccgttttgc cggcggccag catgccgaaa
      421 cctactgcta ttgatgattg tggctttccc tttaaagctt tcacggggtg ctcatcgtaa
      481 ccaattacct cggggcaatc gatcacgaca taagaggatg catcaatgct ttgagcatca
      541 agcaaaggtt ggatttgtga ggcgataccg agcaactgca aataggtacc ttgcttccca
      601 tgttgggtca aatacctctt gaaaccttta actgcctcct cgggggcgaa atcgccaccc
      661 atcatgtcca atgcaatctt catacagggc ggaaagtaat aaaaaggtga caccttttgg
      721 taaaagtgtc accatgaaat gttgcgaaca acaattattt cttcaccggt gatttctcag
      781 caactacctg gcctttgtag tacagctttc cttcgcttac gtgagcacga tggcgaacat
      841 gtgtttcgcc agtagcgctg tctacgctca gggtggctgc ctcagccttg taatgggtac
      901 ggcgcttggc gctgcgctgc tggctatggc gacgtttcgg attaggcata acgtattaga
      961 ttaaaagtta taaatatttc gttttctatt ctttgtcttc cagccctttg aatttttcaa
     1021 ggcccttcca aatcgtttgg gcattgttat cattgggttg catgttcttc agtttttcca
     1081 gcacttcttt gttgcagtag gggccaccca tttgttcgtc agaacacatc cgcgtcatcg
     1141 ggatgctgag attgatgaac tcgtagatcc aatcggccag gtgcaagtga ctctcattgc
     1201 ggtcgatgta ataaacatca ggatcttctt cctgctcgtt catttcatcg gggttttcca
     1261 ccagtttcac taccactttg aattcatccc aaagttgcag tggcaacata ttgccgcaac
     1321 gatcacaaac cacctccagg ctgccgccaa tgtcaaattt caataggaag aaaccattct
     1381 tcttgtccag gtttacctta acggtagcgt ggacattatt gaaatcctgc tggtcgtaat
     1441 ccttaaagaa cttgtcctca atttcgtatt ggaagaggtg ctcgcccggc ttcaatccaa
     1501 caaatgcgat atcatattct ctcctgccgg acatactcct tcctgaaatt agggctgcaa
     1561 aagtaggttt aatcagcttt gccgccaaac aaatagtttc aaaaatctat cacaattcag
     1621 ccaatcgtgg aaaagtggaa aaccttgagc atcaatattt tggccttttt ttgaggctga
     1681 aagtcccgct caagcccggg aacaatggta tcttcaacct ttgaaattct accataataa
     1741 ttacgcaaat cattaataaa caacggatta ggcatgaaaa ggatcaattc attttgcagc
     1801 aaactggttc tccttgtttc ttgcttgctc ctggttcaag tgcttggtta tacccagccg
     1861 ggagatattg gagacacggc tcccgaaata tcgcttcctg acccggatgg caatatcatt
     1921 aagttgtcgg acctgcgggg aaaggtagtc ctggtcgatt tttgggcatc gtggtgtggg
     1981 ccttgccgtt tttcaaacaa gcgcataaag cccctgtacg aaaactataa accggcaggg
     2041 tttgaaatat tgggcgtttc gatagacaat gatattgatg cctggaaaag ggccatcaaa
     2101 tccgacaaga tcacctggtt acaggttaat cagcagggta actggaagag tgaagtggct
     2161 ttgcaatgga acattgaagc attgcccacc actatactca ttgacaggga aggcaaaata
     2221 ttggccgtag atccatccga agagcacttg gaaaagatcc tgaagaaagt cctgtaatgc
     2281 gtggtcaaaa cttcagggca gagtatccct gcaactggaa agtggtgtag gaggtaagaa
     2341 aggaagtggc tattctaacc tgaggaagga tttctgcagg gttgatgttg cgtttcacag
     2401 tcgactgccc gcaaacataa aaattcaccc cggctgcagc cagtttttca agggcctctt
     2461 tattaggatt cgatcttcca tacttccggt tgtacgcctc atcggtctga atgcaataac
     2521 tgccagcgtt gtgaaagatc actgctattt ctcttttgct tttggtaacc ccatccagcg
     2581 ccagcaggtt taccaggcgg gctactaatt caacaggctg gctgatagca ggcgtggatg
     2641 tatcactgtt gttgacttcg attacaattt tgtaatgcat ggatggatcg gccttcaaac
     2701 taactcttgg cacagaggac acctgtccgt acggagatat ttccgggttc aggccttgct
     2761 gggcaaatac gggaaatgag aagaacagca ggctggctat aaacaaaagg ccttt
//
LOCUS       DATIQF010000636         2232 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_101140,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000636 DATIQF010000000
VERSION     DATIQF010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101140"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1470)
                     /locus_tag="VLL95_10830"
     CDS             complement(<1..1470)
                     /locus_tag="VLL95_10830"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HSR39398.1"
                     /translation="MKQNKIRVWLPLLFGLVMALGILTGFQLAGSSGRSRGSDFAERS
                     SVQQVLDLLQYKYVDSVKLDSVQQSAINAMVEHLDPHTTYIPRQELAEVNADLQGAFS
                     GIGVEYQMINDTMNIVYVVEKGPSEKAGLQAGDQIIKVYEKPIAGQKLSGQDLRKLLR
                     GENKSKVEITYLRNGTSHTASITRGNIPLPSVDAWYLVSKDVGYIRLNKFSETTYREF
                     MDAATSLQAKGMKKLILDLRGNSGGILGEATNIVDELLEDGLPIVSTKGLHVKNKTVT
                     SSKPGILEEAPVVILIDDFSASASEVLAGALQDNDRGTIVGRRSFGKGLVQEQYDLAD
                     GGALRITVARYYTPSGRSIQKPFNGNREEYMEEIISRHDGSDSSKPESKEIFTTRKGK
                     KVYGGGGITPDIVIPIDSSRISRETLPLFSNNSIGDFSFELFKANQKAIRGFASVADF
                     DKRFELPAGTFESYLEYAAKDSIRIPANIPPATQQEIMLR"
     gene            1694..>2232
                     /locus_tag="VLL95_10835"
     CDS             1694..>2232
                     /locus_tag="VLL95_10835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39399.1"
                     /translation="MKLIADSGATKTTWTLAGGARKRTFHTPGISPYFFSSEEITALL
                     QKELVPKIGQHLIEAIHFYGTGCATPENCKLVEKGLKGAFRQVKTITVQSDLMAAARA
                     LCGSQKGIACILGTGSNSCVYNGKKIVRNNPAPGFILGDEGSGAYLGKKVVQYFIYNT
                     YDEELMHKFNLKFNTTYRE"
BASE COUNT          552 a          555 c          542 g          583 t
ORIGIN      
        1 gcgcagcatg atttcctgtt gggtcgccgg cggaatattg gccggaatcc tgatgctatc
       61 cttggcggca tattccaggt aagattcaaa agtgcctgcg ggcaattcaa aacgtttgtc
      121 gaaatcggcc acactggcaa aaccgcgtat cgctttctga ttggctttga acaactcaaa
      181 gctgaaatcg ccaatgctgt tgttgctgaa cagcggcaat gtttcgcggg atatcctgga
      241 tgaatcgatg ggaataacga tgtctggagt aatgccgccg ccgccgtaca ctttttttcc
      301 tttgcgggtg gtaaagatct ctttggattc gggtttggaa gaatcgctgc cgtcgtggcg
      361 ggaaatgatc tcttccatgt attcttcccg gtttccgttg aatggctttt gaatgctgcg
      421 gcctgaaggc gtgtaatagc gggctaccgt tatgcgcaag gcgccaccat cggccaaatc
      481 atattgttcc tgcaccaggc ctttgccaaa actcctgcgg ccaacaatgg tgccccggtc
      541 attgtcctgc aaggcacccg ccaatacttc gctggcgctg gcactgaaat catctatcag
      601 aattaccacc ggcgcttcct ccaggatgcc tggtttgctg ctggtaacgg ttttgttctt
      661 tacatgcaaa cccttggtgc tcacaatggg caagccgtct tcgagcaact catctacaat
      721 attggtggct tcgcccaata tgccaccact gttgcctcgc aaatcaagga tcagtttttt
      781 catgcccttg gcctgaagcg aagtggcagc gtccatgaac tcgcggtaag tggtttccga
      841 aaatttattg agacggatat agcctacatc ttttgaaacc aggtaccagg catctaccga
      901 tggcagggga atattgccgc gggtgatgga agcagtgtga gaagtgccat tgcgcaaata
      961 cgtgatttcc actttgctct tgttctcacc ccgaagcagt ttgcgcaaat cctggcccga
     1021 tagtttttgc ccggctattg gtttttcata caccttaatg atttggtcac ctgcctgcaa
     1081 tccggctttt tcactcggtc ctttttccac cacatataca atgttcatgg tgtcattgat
     1141 catctggtac tccaccccaa ttcctgaaaa agcaccctgc aaatcggcat tcacttcggc
     1201 aagttcctgc cggggaatat aggtggtgtg agggtccagg tgctctacca ttgcgttaat
     1261 ggccgattgc tggaccgaat ccaattttac cgaatccaca tatttgtact ggagcagatc
     1321 aagcacctgt tgtacactgg atctttccgc aaaatcgctg ccgcgactcc tgccactgct
     1381 gcctgccaac tggaagccgg ttaaaatacc tagagccatt accaggccaa acagcaatgg
     1441 cagccaaacc ctgatcttat tttgtttcat tgcgagtatt catgatcgta ggctgcgaat
     1501 gtacacgaag gggcacaaac ccgttcaaac cggggtgcag gaaagctacg ttttacaagg
     1561 tttaataact taatttacaa ttgcaattcg gttcttgtca atacattgtg gtcgttttgc
     1621 cacctgcagg tatttgatcc tacaagcatg ctgcgggcca atcaaaaaaa tcggcgattg
     1681 ccgtaatctg aaaatgaaat tgattgcaga cagtggtgcc accaaaacca catggacatt
     1741 agccggaggg gcacgtaaac ggacttttca tacgcccgga atcagtcctt acttcttttc
     1801 ctctgaagaa attaccgcat tgctgcaaaa agaactggtg ccaaaaatcg gccagcatct
     1861 tatcgaggcc atccacttct atggcaccgg atgtgccacc ccagagaatt gcaaactggt
     1921 ggagaagggg ctaaagggcg ctttcagaca ggtaaaaaca ataacggtac aaagcgatct
     1981 gatggctgct gcccgggcat tgtgtggcag ccaaaaaggc attgcctgca ttttgggtac
     2041 cggcagcaac agctgtgtgt ataatggcaa gaagatcgtg aggaacaacc ctgcgccggg
     2101 tttcattttg ggtgatgaag gcagtggcgc atacctgggt aaaaaagtgg ttcagtattt
     2161 catctacaac acttacgatg aggaactgat gcacaagttc aacctgaagt tcaataccac
     2221 ttaccgcgaa at
//
LOCUS       DATIQF010000637         2933 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_10184, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000637 DATIQF010000000
VERSION     DATIQF010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2933
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10184"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2933
                     /locus_tag="VLL95_10840"
     CDS             <1..>2933
                     /locus_tag="VLL95_10840"
                     /inference="COORDINATES: protein motif:HMM:NF036966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HSR39400.1"
                     /translation="ATTAANDYKQYAYVFPANTAVSWNYNDASANVQSTFTVTTDVKE
                     GSGTNVLLGLLPHQWSHLSAGSAQPGPYAYATARGTMKMLAANSFVVENKFKGVLSAL
                     PEMAKYSTGFDPAALNAKIDLVKNNALDTWTDSYNEGLAMNKLVQVAKIADQMGNTAA
                     RDKLITTVKTRLENWLKAVQGENAFVFYYNSTWTTLIGYPAGYSSDANINDHHFHYAN
                     FINAAAAVEQFQPGWAASWGPMVNMLVKDVANWERANTMFPFLRNFNPYAGHSFASGQ
                     LNNEPHGNNQESSSEAMNFNASLIHWGELTGNTAIRDLGIYLYTTEQTAIEEYWFDMS
                     DRNFAPTYSQMMCARVWSNGYDRNTFWTGDIAAMYGIEMFPLTGSHLYLGHNKTYAQA
                     LWNDMTAKTGVLSNTPNDNLWFENYWSFRAFSDPAAALTLYNNYPTYKLKNGNSDAHT
                     YHWLHSFNGMGTVDATVTCNYPIAAVFNKAGDKTYVAHNYGSSGITVTFSDGFSMMVP
                     ARTLKTSKDIAVTALLSSSQMQVPTNGSVTLTAAITGSGITKVEFYDGTQLIGTSTTA
                     PYTINATNLAARVHGFYAKAYVGTSLEISNVVSVVAGAQLPYQGNMVSIPSQVIEAGN
                     YDYYEGGVGQNISYFDATTWNDAGNFRSPEYVDAGPTTGEGNTVGWIDDGEWLEYTVN
                     IAQAGTYDLSFRYASGITAGGGPFHIEVDGNTVANNITVAFTSSNWTVWANKTVAGVI
                     LPAGQHVIRLAFDKGGFNMGKLSFTYKGSASPYLNVSADTASIAQYANSKKAVNLTSN
                     VNWTASSDQAWLSVSPAAGFGDSTLTFTAQENPSTSPRTALVTLAGNGVTTKVVTVTQ
                     EPGGVPYLLVAPASLSYLYQSNTPKNIEITSNVAWTASSDQPWLTLSSTSGTGLAVIT
                     ASAANHAGAAGRTATITISADGLPAKTISVSQNGAPIAITLPINFESDGTYVFTDFDG
                     GVGSVV"
BASE COUNT          756 a          799 c          710 g          668 t
ORIGIN      
        1 gctaccaccg cggccaatga ctacaaacaa tacgcttatg tttttcccgc caacactgca
       61 gttagctgga attacaatga tgcctccgct aacgtgcaat ccactttcac cgtaactacg
      121 gatgtaaagg aaggaagcgg caccaatgtt ctgttgggat tgctgcctca ccaatggtcg
      181 cacctcagcg ccggttcggc acagcccggc ccctatgctt atgctactgc aagaggcact
      241 atgaaaatgc tggcggccaa ttcgtttgtg gtagaaaaca aattcaaagg tgtactgtct
      301 gccctgccgg aaatggccaa gtacagtaca ggatttgacc ccgccgcatt gaacgcaaaa
      361 attgacctgg tcaagaacaa tgcactggac acctggacag attcttacaa cgaagggctg
      421 gccatgaaca agctggtgca ggtggctaag attgccgacc aaatgggcaa tactgcggca
      481 cgtgacaagc tcatcaccac ggtaaaaacc cgactggaaa actggctgaa agcggtgcag
      541 ggcgagaatg cctttgtatt ttattacaac agcacctgga ctacattgat tggttatcct
      601 gccggttact cctcagatgc caacatcaac gaccaccatt ttcactatgc caattttata
      661 aacgctgctg ccgctgtgga gcagtttcaa ccaggatggg cagcgagttg gggcccgatg
      721 gtcaacatgc tcgtgaaaga tgtagccaac tgggagcgtg ccaataccat gtttccattt
      781 ctccggaatt tcaacccata cgctggtcac agcttcgcat caggacaact caacaacgaa
      841 ccgcatggca acaaccagga atcatcatca gaagccatga actttaatgc atcactcatt
      901 cactggggtg aactcactgg caatactgcc atccgcgatt tgggcatcta cctctacacc
      961 accgagcaaa ccgccattga ggaatactgg ttcgacatga gcgatcgcaa ctttgcacct
     1021 acctactcgc aaatgatgtg tgcccgtgta tggagcaatg gatacgaccg caataccttt
     1081 tggacagggg acattgctgc catgtatggc attgaaatgt ttccattaac aggttctcat
     1141 ctttacctcg ggcataacaa aacttatgcg caagcacttt ggaacgacat gactgccaaa
     1201 acaggagtgc tcagtaacac ccccaatgac aatttgtggt tcgaaaacta ctggtcgttc
     1261 cgggcattca gcgatccggc ggcggccctc accctgtaca acaactatcc cacttacaag
     1321 ctcaagaatg gtaattcaga tgcgcatacc taccactggc tgcacagctt taatggcatg
     1381 ggaacggtgg atgccactgt aacgtgcaac taccccattg cggcggtgtt caacaaagcc
     1441 ggtgacaaaa cttatgtagc gcacaattat ggcagctcag gcattaccgt cacgttttcc
     1501 gacggctttt ccatgatggt tcctgcaagg acgctgaaga cgagtaagga tattgccgtg
     1561 acagctttgt tgtcttcatc gcaaatgcag gtgcccacca acggcagcgt caccttaacg
     1621 gcagccatca ccggttcagg catcaccaag gtggaattct atgacggcac ccagctcatt
     1681 ggcacctcca ccactgcgcc atataccatc aatgccacca atttagccgc aagagtacat
     1741 ggcttttacg ccaaagcgta tgtgggcacc tctcttgaaa tttccaatgt tgtctcagtg
     1801 gtagcaggcg ctcaactgcc ctaccagggc aacatggttt ctattccgtc gcaggtgata
     1861 gaggccggca attatgatta ttatgaagga ggtgttggtc agaatatttc ctacttcgat
     1921 gcgactacct ggaatgatgc cggcaatttc aggagcccgg aatatgtaga tgccgggcca
     1981 actaccgggg aaggcaatac cgtaggctgg attgatgatg gcgaatggct ggagtataca
     2041 gtcaacattg cgcaggcagg tacttatgac ctttctttcc gttatgcttc cggcatcact
     2101 gccggtggtg gtccttttca tattgaagtg gatggcaata ccgttgcgaa caatattacc
     2161 gtggccttca ccagcagcaa ttggactgta tgggccaaca aaacagtggc tggtgttatt
     2221 ttgcctgccg ggcaacatgt catccggctg gcattcgaca aaggcggctt caacatgggc
     2281 aagttgtcct tcacatacaa aggatctgca tcgccttacc taaatgtttc ggctgatact
     2341 gccagcatag cccaatatgc caacagcaaa aaagcagtga acctgacctc caatgtgaac
     2401 tggacagcca gcagcgacca ggcctggtta tccgtatcac ctgccgctgg ttttggcgac
     2461 tccacgttga cctttacggc gcaggaaaac ccgagcacct cgccccgcac cgcattggtt
     2521 acattagccg gcaacggcgt aactacgaag gtggtgaccg taacgcagga gccaggcggt
     2581 gtgccatacc tgttggtagc gccagccagc ctcagctatt tgtaccagtc caataccccc
     2641 aagaacatcg agatcacctc gaacgttgcg tggaccgcct ccagcgatca gccctggctc
     2701 acgctgagca gtaccagtgg aacgggtctg gcagtcataa ccgcatcggc cgccaaccat
     2761 gcgggagcag ccggcagaac agccaccata accatttccg ctgacggctt gcccgccaaa
     2821 acgatatcgg tttctcaaaa tggcgcccct atagccatta cgcttcccat caattttgaa
     2881 tcagatggca cttatgtgtt cactgatttt gacggagggg ttggatcggt agt
//
LOCUS       DATIQF010000638         4410 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_283628,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000638 DATIQF010000000
VERSION     DATIQF010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4410
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283628"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..628)
                     /locus_tag="VLL95_10845"
     CDS             complement(<1..628)
                     /locus_tag="VLL95_10845"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSR39401.1"
                     /translation="MKKFFLFLLLAILVLSAVLVVKTVTAPKATFTTAQPLPALPDSA
                     VAHLQQAIQSATISWGETKPIDTAAFRQFDVFLHQSYPLIHQRLSRMVFGEFSYLYKW
                     QGTDSTLNPIILMGHYDVVPVEAVAEKMWRQKPFSGALVSDTVWGRGACDDKGAVVSI
                     LESVEGLLRSGYQPKRTIYLSFGHDEELGGPRGAAKIAAHLKAEGVKAE"
     gene            complement(729..2108)
                     /gene="glmM"
                     /locus_tag="VLL95_10850"
     CDS             complement(729..2108)
                     /gene="glmM"
                     /locus_tag="VLL95_10850"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR03990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HSR39402.1"
                     /translation="MALIKSISGIRGTIGGKPGEGLSPLDVVKFTAAYGTWLLEQGEN
                     KKVVIGRDGRISGPLVRNLVVSTLNALGLDVVDLGLSTTPTVELAVPAEKAAGGIILT
                     ASHNPQEWNALKLLNAKGEFISAADGARVLALAEASNFNFASVNKLGTTTEDDGYMQK
                     HIDAILAYPLVDAKAIAARNFKVVVDGINSSGAIFVPALLKALGVEHITVLNAEVTGH
                     FAHNPEPLPEHLTEMSAAVKRLNADLGIVVDPDVDRLCFVNEDGTMFGEEYTLVAVAD
                     YILTHRQGNTVSNMSSTKALKEVTLKHGGQYFPSAVGEVNVVTKMKEVEAVIGGEGNG
                     GIIVPDFHYGRDALIGIALFLSHLAQTGKPISGLRKMYPDYFISKNKIELHVGIDVQQ
                     IFEDIKKKYKNHPINTEDGLKIEFENDWVHLRTSNTEPIIRIYSESDFESKANNIANR
                     LIADIREAM"
     gene            complement(2174..>4410)
                     /locus_tag="VLL95_10855"
     CDS             complement(2174..>4410)
                     /locus_tag="VLL95_10855"
                     /inference="COORDINATES: protein motif:HMM:NF039501.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF5686 family protein"
                     /protein_id="HSR39403.1"
                     /translation="KEVKELNFVLNFQQTNLGEVVVKANAEDPAYGIIRNAIRKRKEY
                     LNEIEQWQSTVYMKGMIRTYKLPKSILGRPVRISNDIVDSTGKGIIYFSESLTRYYRK
                     LPNQYKEEVISAKVSGNSSGFGFNSPKDVEINLYENNIRIEGLNSRGFVSPISDNALN
                     FYKYKYEGSYFEDGKEVLRVKVMPKRKYEPLFAGGFVEIMDGSWRIHGVHLGLNKESQ
                     IELVDSMLIRQQMFPVNNRVWVPQNTEITATFGILGFVAGANFVAVYSDYDIDSDNSR
                     IFSSRVIRAVDTSANKKTVAYWDSIRPMPLTPDERMDYLRKDTVERKRQDPRYLDSLD
                     RISNKLKFSEFFIGEINHINRKRKTIWEIPSPALGIQYNTVEQWVYQVQPTFRKWGDT
                     GAFNLTARLRYGFGNKHFNASASFSKTVGKDYRKRWNITLSGGKNIFQINPMEPIQPL
                     NNTLGTLLWTVNHMKIYEKAFGQVAARRTLQNGLRLTAAVSYEDRTPLENTDTTRKWR
                     RFDNRSFTSNYPPELPPGYFERHQAFITTFNLRWQPGLQFMEYPNRRFVVASDKPVFN
                     LTLTKSWKNLFGADADFGKWLVSVEDDINMRLGGSLNYFAELGGFIKNANVQLPDWRH
                     FMGNQTVVASPYVKSFQLAPYYANSTRDHFFATAHVEWHLNGLGTNKIPLFRKLNWNL
                     VTGSNAFLVDANRNYVEIFFGLENILKSIRVDYVLGYDGFNKRPVTGVVLGFSGLFTG
                     QGID"
BASE COUNT         1010 a         1154 c         1082 g         1164 t
ORIGIN      
        1 attccgcttt cacgccttca gctttcaggt gggcggctat tttggcggcg cccctgggac
       61 cgcccaattc ctcatcgtga ccaaaactca ggtagatggt tcgtttgggt tgataaccgc
      121 tgcgcagcaa gccttccacg ctttccagga tggataccac cgcccctttg tcgtcgcagg
      181 cacccctgcc ccataccgtg tcgctcacca atgccccgga aaatggcttt tgccgccaca
      241 tcttctctgc tacggcttct accggcacta catcgtagtg gcccattaaa atgatgggat
      301 tcaaagtgga atcggtaccc tgccatttgt acaagtagga aaattcaccg aataccatgc
      361 ggctcaggcg ctggtgaatg agcggatacg attgatgcag gaaaacatca aactggcgaa
      421 aggccgctgt atcaatcggc ttggtttcac cccaggaaat ggtagctgac tggatggctt
      481 gctgcaggtg ggctacagca ctgtcgggca aggccggcaa tggttgtgcc gtggtaaaag
      541 tggccttggg agccgtgacg gtcttcacta ccaatacagc cgacaatacc aatatggcca
      601 gcaaaaggaa aaggaagaat tttttcatac ttgcattttt gggcttgaaa agataaggga
      661 cgccggaatg gcagaaaaaa aataccgggc ctggtggcgc cggtatttca aacaaggagc
      721 tgcagtcgtt acatggcttc cctgatatca gctatcaggc gattggcaat gttattggct
      781 ttgctttcaa aatcactctc gctgtaaatg cggataatag gttctgtatt gctggtgcgt
      841 aaatgcaccc agtcgttttc aaactcaatc ttcaagccat cttccgtatt gatggggtgg
      901 ttcttgtatt tctttttgat gtcctcaaaa atctgctgca catcaatgcc tacatgcagt
      961 tcaattttgt ttttgctgat gaaatagtcg gggtacattt tgcgcaaacc actgatgggc
     1021 ttaccggttt gtgccaggtg agaaaggaac aaagcaatcc cgatcaacgc gtcgcgaccg
     1081 taatgaaaat cgggcacaat aatgccgcca ttgccttcgc cgccgatcac cgcttccact
     1141 tccttcattt tggtcaccac attcacctct cccacggcac tgggaaaata ttgtccgccg
     1201 tgcttcagtg ttacttcttt gagtgccttg gtgctgctca tgttgctcac cgtattgccc
     1261 tggcggtgtg tcaggatgta atcggccact gccaccagtg tgtactcttc gccaaacatg
     1321 gtgccatcct cgtttacaaa acacaaacga tccacatcag ggtcaaccac aatgcccagg
     1381 tcggcattca agcgctttac tgccgcactc atttcagtaa ggtgctcagg aagcggttcc
     1441 gggttgtggg caaaatgccc tgtcacctcg gcattcaaaa ccgtgatatg ttccactccc
     1501 aaggctttca gtaaggccgg cacaaatatg gcgcctgaac tgttgatgcc atccaccacc
     1561 actttgaaat tgcgggcagc aatggctttg gcatccacca gcgggtaggc cagtattgca
     1621 tcgatgtgct tttgcatata gccgtcatcc tccgtggtag tgcccaactt gttaaccgaa
     1681 gcaaaattga aatttgaagc ttcggccagc gccagcaccc gggcgccatc tgcagcggaa
     1741 atgaactccc ctttggcatt gagcagtttc agggcattcc attcctgcgg gttgtggctg
     1801 gcagtgagga tgatgccgcc tgctgctttt tctgcaggca ccgccaattc tacagtgggt
     1861 gtggtgctga gtccaaggtc taccacatcc agtccaaggg cattgagggt gctcaccacg
     1921 aggttgcgta ccaaggggcc gctgatgcgc ccatcacgac caatcactac tttcttgttt
     1981 tcgccttgct ccagcaacca ggtgccgtaa gcagccgtaa actttaccac atccaatggc
     2041 gacaatcctt ctccaggttt gccacctatg gtcccacgaa ttccggaaat cgacttgata
     2101 agtgccataa tccaatcaca ttgttagcag ggtgcgaaga taggatggcg ggcacaatta
     2161 gcggggccca tccttaatcg atgccctggc cggtaaacag cccgctgaac ccgagaacca
     2221 cacccgtcac cggccttttg ttgaagccgt cgtaaccgag cacataatca accctgatgg
     2281 atttgagaat gttctcgagg ccaaagaata tttccacata gttcctgttg gcatccacca
     2341 aaaacgcatt gctgccggtc accaaattcc agttcagctt tctgaacaac gggatcttgt
     2401 tggtacccaa cccattgaga tgccactcca catgtgccgt ggcaaaaaag tggtcgcggg
     2461 tactgttggc gtagtaaggc gccaactgga aactcttgac ataggggctg gctactacgg
     2521 tctggttgcc catgaagtgt cgccagtcgg gcaattgcac attggcattt ttgatgaacc
     2581 cacccaactc ggcaaaataa ttgagcgatc cacccagccg catgttgatg tcatcttcca
     2641 cactcaccag ccactttcca aagtcggcat cggcaccaaa aaggttcttc cacgacttgg
     2701 tcaatgtaag gttgaataca ggcttgtcgc tggccactac aaaacgcctg ttcgggtatt
     2761 ccatgaactg taatcccggt tgccagcgta aattaaaggt agtgatgaat gcctggtgtc
     2821 gttcgaaata ccccggtggc aactcaggtg ggtaattgct ggtgaagctt cggttatcaa
     2881 accggcgcca ctttcgggta gtgtccgtgt tctccagcgg agtgcggtct tcataagaaa
     2941 cggcagcggt cagcctcaaa ccattttgta gtgttcttct cgccgccacc tggccaaacg
     3001 ctttctcata aatcttcatg tggttgacag tccacagcaa tgtgccaagc gtattgttca
     3061 atggttgaat cggctccatc gggttgatct ggaaaatatt cttgccaccg gacaatgtga
     3121 tattccaacg cttcctgtaa tccttgccta ctgttttgga gaaactggcg ctggcattga
     3181 aatgtttgtt gccaaagcca tagcgcaacc gggctgtcag gttgaaggcg cccgtgtcgc
     3241 cccatttcct gaaagtgggc tgcacctggt agacccattg ttccacggtg ttgtattgaa
     3301 tgccgagagc cggtgacggg atttcccaaa tggtcttgcg ctttcgattg atgtgattga
     3361 tttcgccgat aaagaactca gagaatttga gcttgttgct gatcctgtcc agcgaatcga
     3421 ggtaacgggg atcttgtctt tttctctcca ccgtgtcctt gcgcaggtaa tccatccgtt
     3481 catccggtgt aaggggcatg gggcggatgc tgtcccagta tgccactgtt tttttgttgg
     3541 ccgatgtatc tacggcccga atgacacggg atgaaaaaat gcggctgttg tcagagtcaa
     3601 tatcgtaatc gctgtatact gctacaaaat tggcgccggc cacaaacccc agtatcccga
     3661 aggtggcagt tatctcagtg ttttgcggca cccataccct gttgttcacc gggaacatct
     3721 gctgcctgat aagcatgctg tcaaccagtt ctatctgcga ttctttgttg aggccaaggt
     3781 gcaccccgtg aatgcgccag gatccatcca tgatctccac aaaaccaccg gcgaacaatg
     3841 gttcgtattt gcgtttgggc atcactttta cccgcagcac ttctttacca tcttcaaaat
     3901 aagagccttc gtatttgtac ttgtaaaagt tgagggcatt gtcgctgatg ggcgaaacaa
     3961 acccgcgact gttgagccct tcaatgcgga tgttgttttc atacaggttg atctccacat
     4021 ccttgggact gttgaaacca aagccgctgc tgttgccact taccttggcg ctgatgactt
     4081 cttccttgta ttggttgggc aattttcggt agtaccgcgt cagcgattcg ctgaaataga
     4141 tgatgccttt gccggtgctg tcaacaatgt cattggaaat acgcaccggc cggccgagga
     4201 tgcttttggg caatttgtaa gtgcggatca tgcccttcat gtacaccgtg gattgccatt
     4261 gctctatttc attaaggtat tcctttcttt tcctgatggc attgcgaata atgccatagg
     4321 ccggatcttc cgcattggcc tttaccacta cttcacccaa attggtttgc tggaaattga
     4381 ggacaaaatt gagttccttc acttctttgc
//
LOCUS       DATIQF010000639         2111 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_55906, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000639 DATIQF010000000
VERSION     DATIQF010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2111
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55906"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1100)
                     /locus_tag="VLL95_10860"
     CDS             complement(<1..1100)
                     /locus_tag="VLL95_10860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR39404.1"
                     /translation="MSKLTTWTFLCFLLAWSAMGWAQPKIEFQMKKPQQFEQRQLGSE
                     KSADKKFTVVRRFFQNTYTHYNYYYNGNLKINQIIDYATQSQKDDYTTLLSFHPYSLD
                     VTSRSGDIDSILQTATAGILLHDLRNDWIDDLYLVIGKAYLLRKDYDSAMMAFQFLNY
                     SYAPKEKGGYDMPIGSNAVEGSNALSISTKEKTSLTRRIFSNPPSRNESFVWMIRALT
                     EKRSFLDAASLISTLRNDPIFPERLKPLLHENTAYLYYKIEQWDSAAAYLEKSIVGIS
                     GIEARSRAWFLTGQLYQLGGDYASAVEAFQKSSKSAVDHVLDIYARLNTIRLRKSDDP
                     AIIDENIAALKDLARKDRYRLYRDIIFYAAAM"
     gene            1299..1703
                     /locus_tag="VLL95_10865"
     CDS             1299..1703
                     /locus_tag="VLL95_10865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39405.1"
                     /translation="MMETLRKNTAVKRLRNRYRLLVMNDDTFEEVIVFRLTRVSVYVA
                     ASTIFVLLVGLTLAVISFTNLRFLIPGYGKQSSLQELRLLKMKTDSLEKSLATQRLYL
                     DDLQKVLKGDTAMLVRDTSSLKLPAATEEITD"
     gene            1715..>2111
                     /locus_tag="VLL95_10870"
     CDS             1715..>2111
                     /locus_tag="VLL95_10870"
                     /inference="COORDINATES: protein motif:HMM:NF016408.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HSR39406.1"
                     /translation="MSFVMKDKGLLQKGGPVNGTTIIAADTVCTGNLESGNDLRIDGT
                     IHGDVVCKSKVVVGNGGQIFGNIRCAQADIIGHVTGNVAASESLSLRNGAKLVGDIHT
                     PMLQMENGVLFDGHCCMGAIPEEHSNTRRN"
BASE COUNT          522 a          478 c          574 g          537 t
ORIGIN      
        1 aacatggcgg cggcataaaa aatgatatcg cggtacagcc gatacctatc ctttcttgca
       61 agatctttta gggcggcaat gttctcgtcg ataatggccg ggtcatcgct ttttcgaagc
      121 ctgatggtat tgagcctggc ataaatatcg agtacatggt ccactgccga tttgctcgat
      181 ttttgaaagg cttccacggc actggcatag tcgcctccca actgatacaa ctggcctgtc
      241 aggaaccatg cccttgacct cgcttcaatt ccgctgatgc cgacaatcga tttttcgaga
      301 taagcggcgg cgctgtccca ttgttcgatt ttgtaataga gataggccgt gttttcatgc
      361 aacaaaggtt tcagcctttc tgggaaaatg gggtcgttcc gcaaggtact gatgagggag
      421 gcggcatcca ggaaactcct tttttctgtg agggcccgta tcatccatac aaacgactcg
      481 tttcggctgg gtgggttgga aaaaatcctg cgggtgaggc ttgtcttttc tttggtagaa
      541 atgctcagtg cattgctgcc ttccaccgcg ttgctgccga tgggcatatc atacccgcct
      601 ttttccttgg gcgcatagga gtaattcagg aattggaatg ccatcatggc cgaatcgtag
      661 tctttgcgca acaggtaggc ttttccaatg accaggtaca ggtcgtcgat ccagtcgttc
      721 cgaaggtcgt gcagtaaaat gccggcagtg gctgtctgca aaatcgagtc aatatcgccc
      781 gaccgtgagg tgacatccag gctgtaagga tggaaactga gcagggtggt ataatcgtct
      841 ttttgggatt gggtggcgta atcaatgatc tggttgatct tgaggttgcc attgtaatag
      901 tagttgtagt gggtataggt attctggaaa aagcgccgaa caaccgtaaa tttcttatcg
      961 gctgactttt cagaacccaa ctggcgctgc tcgaactgct gtggtttctt catctggaat
     1021 tcgatcttgg gttgggccca acccatggcc gaccaggcaa gcaggaaaca aagaaaggtc
     1081 caggtagtaa gtttcgacat agcaggaaag ggatgcctcc gggaatgatt tccatagccg
     1141 tgggggcgtc tcccttgcga caaattaagc aaaaagctca cctccctcca aaagcggttt
     1201 ggaaggtgcc ggccatgacg ggtacacggg ctgccggcca gcccggggca acaattggta
     1261 atgcagtttt gcacggtgcg tctatcttta acgccagaat gatggaaaca ttgcgaaaga
     1321 atacggctgt aaaacgattg cgcaaccgtt acaggctgtt ggtgatgaac gacgacacct
     1381 ttgaggaggt cattgttttc aggttgacaa gggtgagtgt ttacgtagcc gccagcacca
     1441 tttttgtatt gctggtaggt cttaccctgg cagtaatatc ctttaccaat cttcgcttcc
     1501 tgatccccgg ttatggcaag caaagctcat tgcaggaatt gcggctattg aagatgaaaa
     1561 ccgacagcct cgaaaaatcg ttggccacac agcggcttta cctcgatgac ctacaaaaag
     1621 tgttgaaagg cgacaccgca atgctcgttc gtgatacatc ttccctaaaa ttgccggccg
     1681 ctactgaaga gatcactgat tagaaaatcg aaatatgagt tttgtgatga aagacaaagg
     1741 attgctgcag aaaggtggac cggtgaacgg gaccaccatt attgctgcag atactgtttg
     1801 caccgggaac ctggaaagcg gaaatgacct gcggatagac gggaccattc atggcgatgt
     1861 tgtttgtaag agcaaagtgg tggtgggcaa cggcggacag atatttggga atattcgttg
     1921 tgcacaagcc gacatcattg gccatgtaac cggcaatgtg gcggccagcg aatctctctc
     1981 gctgcgcaat ggtgccaaac tggtgggtga tattcataca ccgatgctgc aaatggaaaa
     2041 tggcgttttg tttgatggcc attgctgcat gggtgccatt ccggaagagc actcgaatac
     2101 ccgccgaaac a
//
LOCUS       DATIQF010000640         2301 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_86218, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000640 DATIQF010000000
VERSION     DATIQF010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2301
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86218"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1905
                     /locus_tag="VLL95_10875"
     CDS             <1..1905
                     /locus_tag="VLL95_10875"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSR39407.1"
                     /translation="QYGNAAQSNNRNPIAMAENAGTSVTDGATLLTRFGFNLHPVKGL
                     EIEGFWGREIRNPHSKSFVKNVNIYQPNLATRQLDLVANWPGTTSLSESWRNDLYQTW
                     LGQATYQTRIANDHSIKVLVGGQSELTSNYFFGASRTGFVNPNQPYLSLGSGARDNSS
                     GTQELALAGFYGRINYGFKDRYLLELNGRRDGTSRFSQANNKQWGNFGSASAAWIFSK
                     ENFFKGLSDNISFGKLRFSYGANGNQNIGNDFYVFDAFYENAVYNNNINGTNSYVGNT
                     TNLGLALLQFPNPDLSWERSKQWNIGLDLSFLKNFTLTADYYVRTLEDMILRRTLPAS
                     AGGLGNPFVNSGSMENKGWELSLNYRKSFGKWRIDATGMISDVVNNVTKLIEGLPFTG
                     DGIRTAPGQALNSYFGYRALGYFADSNEVKNSPVQFGIPWNSNPTQGPKPGDTKYADI
                     SGPDGKPDGKVDANDRAFLGNAFPRYEYSINLVLGYGNFDLNLFGQGVGKRDNYLSGT
                     GAIPFASNDFAASLLEIHKDNWTPTNLNSTFPRLLPSGFGGNNFLLSDLWIRSASFFR
                     LKNVNLGFTFPAAMMQKAKISSLRVYVSAQNLFTITKAWDGFDPEINNANAEFYPVMR
                     TFTAGLNVTF"
     gene            1929..>2301
                     /locus_tag="VLL95_10880"
     CDS             1929..>2301
                     /locus_tag="VLL95_10880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39408.1"
                     /translation="MKKIFISSLVLGLMATAGCDKYLDRKPLDAASATTFLSNQAEIE
                     QGLTGVYASAMWVFPNNTPLLFAVEASTDLAIKRGGNAEDLVAMGEAGPFVINNALVN
                     TCWRDAYRLIQRANNQLTGMER"
BASE COUNT          612 a          588 c          533 g          568 t
ORIGIN      
        1 caatatggta atgcggcaca aagcaacaac cgtaacccca tagccatggc agaaaatgca
       61 ggcacttccg tgacagatgg agcaaccctg cttacccgct ttggtttcaa tttgcacccc
      121 gtgaagggcc tggaaattga aggattctgg ggaagggaga tcaggaaccc gcactcaaag
      181 tctttcgtca agaacgtaaa catttaccag cctaacctgg ctacccgtca actggaccta
      241 gtagcaaact ggcccggtac taccagcctg agcgaaagct ggagaaatga cctctatcaa
      301 acctggttgg gtcaggccac ttatcagaca cgcattgcca acgaccacag catcaaagtg
      361 ctggtgggcg gacaaagcga acttacttcc aactacttct ttggagcctc acgtaccggg
      421 tttgtcaacc ccaatcagcc ttacctgagt ttgggttctg gcgcccgtga caatagttcc
      481 ggaacgcagg aactggccct ggctggcttt tacggcagga tcaactatgg attcaaagac
      541 cgttatttac tggaattgaa tggccgccgc gatggtactt cccgtttctc gcaggcaaac
      601 aacaagcagt ggggtaattt cgggtcggcc tcagccgcct ggatcttctc gaaagaaaat
      661 ttcttcaaag gactatctga caatatcagc ttcggtaaac tgcgtttttc ttatggtgcc
      721 aatggcaacc agaacattgg aaacgacttc tatgtatttg atgcctttta tgaaaacgct
      781 gtttacaaca acaacattaa cggtacaaac tcctacgttg gcaataccac taacctgggt
      841 ttggccctgt tgcaatttcc aaaccctgat ttgagctggg aaaggtcaaa gcagtggaac
      901 atcggtttgg acctgagctt cctcaagaac ttcaccctta ctgccgacta ctatgttcgt
      961 acgcttgagg atatgatcct gcgtcgcaca ttgccagctt cagccggtgg attgggcaac
     1021 ccatttgtga attcaggcag catggaaaat aaaggttggg aactgagcct taactatcgc
     1081 aaatcgtttg gcaagtggcg catagacgcg accggaatga tcagcgatgt ggtgaacaac
     1141 gtgaccaaac tcattgaagg cttgcccttt accggcgacg gtattcgcac cgcccccgga
     1201 caggcgctta actcctattt tggttacaga gcccttggat actttgccga ctctaatgag
     1261 gttaagaatt cacctgtgca atttggtatt ccctggaatt ccaatccaac gcaaggcccc
     1321 aaacccggcg acaccaagta tgctgacatc agcggacccg acggaaaacc agatggaaaa
     1381 gttgatgcca acgaccgtgc tttcctgggc aacgctttcc ctcgttatga atacagcatc
     1441 aacctggtat tgggttatgg caatttcgat ttgaacctgt ttggccaggg cgtaggcaaa
     1501 cgcgacaact acctgagcgg taccggtgct atcccctttg ccagcaatga ctttgcagcc
     1561 tcactgctcg aaatccataa agacaactgg acccccacaa acctgaattc aactttccca
     1621 aggttgttgc cttcaggatt tggtggaaac aacttcctgc tttctgacct ctggattcgc
     1681 agcgcctctt tcttcaggct caaaaacgta aacctcggat ttactttccc tgccgcaatg
     1741 atgcagaaag ccaagatctc ttctttgcga gtatatgtaa gtgcacagaa cctcttcacc
     1801 attaccaagg catgggatgg attcgatcct gaaatcaaca atgccaacgc tgagttttac
     1861 ccggtgatgc gcacatttac tgcaggtttg aacgtaacct tttaattaat ttctaagaag
     1921 gagaacacat gaaaaagata tttatttcat ccttggttct gggcctgatg gccactgcgg
     1981 gttgcgacaa atacctcgac agaaaaccat tggatgcagc ttccgccact actttcttat
     2041 ccaaccaggc agaaatagaa caaggcctta ccggggttta cgcttctgcc atgtgggtat
     2101 ttcccaacaa tacgccattg ctatttgccg tagaagcttc caccgatttg gccatcaagc
     2161 gtgggggtaa tgccgaagac ctggtagcca tgggtgaagc aggcccattt gtaatcaaca
     2221 atgctttggt taatacttgc tggagagatg catatcggct tattcaaaga gcgaataacc
     2281 agctgactgg aatggaacgt g
//
LOCUS       DATIQF010000641         2516 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_253381,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000641 DATIQF010000000
VERSION     DATIQF010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2516
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253381"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..614
                     /locus_tag="VLL95_10885"
     CDS             <1..614
                     /locus_tag="VLL95_10885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39409.1"
                     /translation="KQLTKSKGYDAEATLSPDGKKMVYTSTKSGDLELWIMDLKSGKE
                     KQVTYMLGYDGGAWYSPDGTKLIWRASRPTTEAAIKEYKSLLAENLVAPTNMEVWIAN
                     ADGSNPRKVTAYGQANWAPTYMPDSKHILFASNHEYKRGFPFNLYMINEDGTDLTKVS
                     RDQGFDAFPMFSYDGKMLVFCSNRNNGGTRDTNIFLAEWVENP"
     gene            706..1146
                     /locus_tag="VLL95_10890"
     CDS             706..1146
                     /locus_tag="VLL95_10890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39410.1"
                     /translation="MLRWVILILLLLNVYRHATAGAQPYGDKDRKLGLYLMISAHIML
                     LLGLFQYFFGGVGLSRIQDIGMGEVMKNSEWRYWAVEHVSAMVISIVLITLGYGVRKK
                     QMDDIAKHRRALLLYAVALLLILAAMPWPGRQGEIGRSLIPGMQ"
     gene            complement(1226..2350)
                     /locus_tag="VLL95_10895"
     CDS             complement(1226..2350)
                     /locus_tag="VLL95_10895"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HSR39411.1"
                     /translation="MSHLDRRDWLKHSTMALAGMSFAGTLFGREKPWQELWEYEAEPT
                     LIRIGQNENPYGPSAATKKAMMESLGISNRYPSELVAELREKIAKAYGLTKEHLLLGA
                     GSSELLGNTAALAAQRKGSNVVTGDPTFRVWFGAAEMYGLSLKKVPLTAGKVHDLDAM
                     LAAMDGNTSMVYVVNPHNPTGTVVADADLQRFAEKVTEKAILLLDEAYTEYSDVKSLA
                     PMVRDNKNLVVAKTFSKIYGLAGARVGFVLAHPDTIKKLAAWQPWANASPSAVSLTGA
                     IAAMDDTAFMKYSRDNNELVKQYVTVELTKMGYKVIPSHTSFFYYDAAPFKGDLAAVM
                     QAANFSAIRIFEPTTTWRRTSLGTMDEMKKFLKVLKESNA"
BASE COUNT          590 a          620 c          659 g          647 t
ORIGIN      
        1 taaagcaact gaccaaatca aaaggttatg atgccgaagc tacgctcagc cccgatggaa
       61 agaaaatggt gtacaccagc accaagagtg gtgatcttga attgtggatc atggatttga
      121 aaagtggcaa ggaaaagcag gtgacttaca tgctgggcta cgacggtggt gcctggtata
      181 gccccgatgg taccaagctg atctggagag cttcacgccc tactactgag gcggcaataa
      241 aagaatacaa aagcttgctg gctgaaaacc tggtggctcc caccaatatg gaagtttgga
      301 ttgccaatgc agatggcagc aatccccgca aagtgactgc gtacgggcag gccaactggg
      361 cgcctactta catgcctgac agtaagcaca ttttatttgc cagcaatcat gaatacaaga
      421 gaggttttcc ttttaatctc tacatgataa acgaagatgg tacggacctt actaaggtga
      481 gccgcgacca gggttttgac gccttcccca tgttcagcta cgatggaaag atgctggtgt
      541 tctgcagcaa ccgcaacaat ggcggcaccc gcgacactaa tatattcctg gccgagtggg
      601 tggaaaaccc ataatggaca gaatagggat ggacaaccaa aatcactttc ctttgtcgta
      661 accaaaaatc aaactatgta cgcaggttca gttcatttac acaatatgct tcgctgggtc
      721 atactcattc tgctgctgct gaatgtgtac cgccacgcca cagccggtgc tcagccttac
      781 ggagacaaag accgcaaatt gggtttgtac ctcatgatca gcgcccacat tatgttgctg
      841 ctgggtctgt tccagtattt ctttggtggt gttggtctca gtcgcatcca ggatattggc
      901 atgggagagg taatgaaaaa cagcgaatgg cgttactggg ccgttgagca tgtttcagcc
      961 atggtaattt ccattgtgct catcaccctt ggttatggag ttcgcaaaaa gcaaatggat
     1021 gatatcgcca agcaccgcag ggcgctgctc ttgtatgcgg ttgcgttgct cctaatcctg
     1081 gccgccatgc catggcccgg aagacaggga gaaattgggc gttctttgat ccccggtatg
     1141 cagtaattgc aatcattcac cttcataaga aaagcgacct cattttgggg tcgcttttca
     1201 tttcaatcaa atacaggttg cagtttcagg cgttgctttc cttcagcact ttcaaaaact
     1261 ttttcatttc atccatggtg ccgagtgagg tgcggcgcca ggtagtggtg ggctcaaaaa
     1321 tgcggatggc cgaaaaattg gcggcttgca ttacagcggc caggtcacct ttgaaagggg
     1381 ccgcgtcgta atagaagaag ctggtatggg aggggatcac tttgtatccc atcttggtca
     1441 gctcaacggt gacatattgt tttaccagtt cgttgttgtc gcggctgtat ttcatgaatg
     1501 cagtatcatc catagctgca atggcgccgg taaggctcac agcgctgggg ctggcattgg
     1561 cccagggctg ccatgccgct agttttttga tggtatcggg atgcgccagc acaaagccta
     1621 cacgggcacc agccaatcca tagatcttcg aaaaggtttt ggctaccacc aggtttttgt
     1681 tgtcgcgaac catgggggcc aagcttttca cgtcgctgta ttccgtgtat gcttcatcca
     1741 gtaagaggat cgctttttca gttacttttt ccgcaaagcg ctgcaggtcg gcatcagcca
     1801 ccacagtgcc tgtagggtta tggggattca ccacgtacac catgctggta ttgccatcca
     1861 tggcggccag catggcatcc aggtcatgca ccttgcctgc tgtaaggggt actttcttca
     1921 gcgacaagcc atacatctcg gcggcgccaa accacacccg gaaggtggga tcgcctgtta
     1981 ccacgttgct gcctttacgc tgtgcggcta aagcagccgt attgcccagc aattcgctgg
     2041 aaccggcgcc cagcaacaaa tgctctttgg ttaggccgta ggctttggca atcttttccc
     2101 gcaattctgc caccaactcg ctggggtagc ggttgctgat acccaggctt tccatcatcg
     2161 cttttttggt ggccgcagaa ggtccgtatg gattttcatt ctggccaatg cggatgaggg
     2221 tcggctccgc ctcatattcc cacagctcct gccagggttt ttcgcgccca aacagggtgc
     2281 cggcaaaaga catgcctgcc agagccatgg tgctgtgttt tagccaatcg cggcgatcga
     2341 gatgagacat aagcagtttt ttttgaatgc ttgaaattag ggaaagtcct gatctaagtt
     2401 cctcttttgc ccaattcaat tacttccagg ttttcaggtt tatggttgtt gatctggaaa
     2461 cgcatgatgg tgcgtacctg gtgccagcca tgtctgccgg ctgcacccgg gttgag
//
LOCUS       DATIQF010000642         1771 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_299189,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000642 DATIQF010000000
VERSION     DATIQF010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299189"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1019)
                     /gene="dnaG"
                     /locus_tag="VLL95_10900"
     CDS             complement(<1..1019)
                     /gene="dnaG"
                     /locus_tag="VLL95_10900"
                     /inference="COORDINATES: protein motif:HMM:TIGR01391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HSR39412.1"
                     /translation="MISQETVNRITNSINILEVVGDFVQLKRRGANYLGLCPFHGEKT
                     PSFTVSPSKEIYKCFGCGKSGNAISFVMEHEKLGYPEALRWLARKYNIEIQETETDPE
                     YKERQATADSLYIINQFAQKFFAEKLWDDEMGQAVAYSYLQERGFTDETIRKFGLGYC
                     PNERDAFARTAVKQQYNPEMLMKAGLVVQRDYGLQDNYRDRIIFPVHNHIGKIISFGA
                     RLIKNRDNAPKYINTPENELYVKSKLLYGIFFARTTIERNDECLLVEGYTDVISLNQA
                     GVENVVASGGTALTPDQLRLIKRYTKHLTILYDGDPAGIKAALRGFDLALAEGLYVKL
                     VLLPDG"
     gene            1076..1222
                     /locus_tag="VLL95_10905"
     CDS             1076..1222
                     /locus_tag="VLL95_10905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39413.1"
                     /translation="MNKKFQFFLAGIGCVLLLAACSRGTHELVFRPADDTRYNLTYKI
                     GGEV"
     gene            1229..>1771
                     /locus_tag="VLL95_10910"
     CDS             1229..>1771
                     /locus_tag="VLL95_10910"
                     /inference="COORDINATES: protein motif:HMM:NF039709.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6263 family protein"
                     /protein_id="HSR39414.1"
                     /translation="MLGSGIKQPVHTEINCVIKFDTLPNGKTAASFSYNNYWFDQAGI
                     RPTLNKDSLQQRDSIANQVFETLRTLSFHTIMSQKGQTEKKQATDSIWKVVEASLAPL
                     DEKVRVQLAAALRPLINDDMMGTMLEQCFYILPGKRVDVGDKWTNQIRMKSIFTMLLI
                     NEFELKSVKNGVAEIAVVSKV"
BASE COUNT          417 a          439 c          464 g          451 t
ORIGIN      
        1 ccatcgggca gcaataccag tttcacatac agaccttccg ccaatgccag gtcgaagccg
       61 cggagtgccg ctttgatacc tgccggatca ccatcataca aaatggtgag atgcttggtg
      121 taacgtttta tgagcctgag ctggtcgggt gttagcgccg taccgccact ggccaccaca
      181 ttctctacac cggcctggtt caggctgatc acatcggtat aaccttccac cagcaggcat
      241 tcatcgtttc tttcgatggt ggtgcgggca aagaatatgc cgtacagcag tttgctcttt
      301 acgtacagct cattctccgg cgtgttgatg tatttgggtg cgttgtcacg gttcttgatg
      361 aggcgggcgc caaaactaat gatcttgccg atgtggttgt gtacgggaaa tatgatcctg
      421 tcgcggtaat tatcctgaag gccataatcc cgctgcacca ccaggcctgc tttcatcagc
      481 atttccgggt tgtactgctg cttcacggcc gtgcgggcaa aggcatctct ttcgttgggg
      541 caataaccca atccaaactt gcgaatggtt tcgtccgtaa aaccacgttc ctgcaggtaa
      601 ctgtatgcca cagcctggcc catttcatca tcccagagtt tttcggcaaa gaatttctgc
      661 gcaaactggt tgatgatgta caaactgtcg gcggtggcct gtctttcctt gtattcagga
      721 tcggtttccg tttcctgtat ctcaatattg tatttgcggg ccagccaacg gagcgcttca
      781 ggataaccca gtttttcatg ctccatcacg aagctgatgg cattgccact cttgccacag
      841 ccgaagcatt tgtagatctc tttggacggc gaaaccgtga aactgggtgt tttctcgcca
      901 tggaatgggc acaggccgag ataattggca cccctgcgct tgagttgcac aaagtcgccc
      961 accacctcga ggatattgat gctgttcgtg atcctgttga ccgtttcctg gctgatcatg
     1021 tggcgaattt agggctggcg gtgattggtt tgagattcta gtgatatttg gggcaatgaa
     1081 taagaagttt cagtttttcc tggctggcat tggctgtgtc cttttactgg cggcgtgcag
     1141 ccggggtacc cacgaattgg tattccgacc ggccgacgat acccgctaca acctgaccta
     1201 caaaataggc ggggaggtgt agatcaacat gctgggcagc ggtattaaac aaccggttca
     1261 taccgagatc aattgcgtca taaaatttga tacgctcccc aatggaaaga cagcggccag
     1321 tttttcgtac aacaattact ggttcgacca ggctggcatt cggccaacgt tgaataagga
     1381 tagcctgcag cagagagaca gtattgccaa ccaggtgttc gaaacgctgc gcacccttag
     1441 ctttcacacc atcatgagcc agaaaggaca aaccgaaaag aagcaggcca ccgacagcat
     1501 atggaaagtg gtggaagctt cgctggcgcc gctcgatgaa aaggtgcggg tgcaactggc
     1561 ggctgccctg cgaccattga tcaatgacga catgatgggc accatgctcg aacagtgctt
     1621 ttacatattg ccgggcaaaa gggtggatgt gggcgataag tggaccaacc agatccggat
     1681 gaaatccatt tttaccatgc tcctcatcaa cgagtttgaa ttgaaatctg taaagaatgg
     1741 agtggctgaa attgcagtag tatccaaagt g
//
LOCUS       DATIQF010000643         3141 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_40524, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000643 DATIQF010000000
VERSION     DATIQF010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3141
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40524"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..476)
                     /locus_tag="VLL95_10915"
     CDS             complement(<1..476)
                     /locus_tag="VLL95_10915"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HSR39415.1"
                     /translation="MVKEKILVIGASGQIGVELTLALRKIYGNANVIASDLREQNPLL
                     EGTGPYVALDVMNKEMLHVQVIRQGITQIYLLAAILSATGEKNPNLAWHLNMQGLLNV
                     LDIAREEKLHKVYWPSSIAVFGPTSPKQNCPQQTIIEPVTVYGISKYAGEFWCNYY"
     gene            560..1408
                     /gene="kdsA"
                     /locus_tag="VLL95_10920"
     CDS             560..1408
                     /gene="kdsA"
                     /locus_tag="VLL95_10920"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: protein motif:HMM:NF003543.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HSR39416.1"
                     /translation="MYLRPMDKMLTDLFAKQSYDPNNFFLIAGPCVVESEDLVMEVAE
                     TVSGICKKLQIPYVFKASYRKANRTSASSFTGLGDEVGLGLIKKVGDKYQLPTTSDVH
                     AHDECAEAAKYVDILQIPAFLCRQTDLLQAAAVTGKVVNVKKGQFLSGPSMKFAVEKI
                     RNAGNDKVMLTERGTTFGYQDLVVDYRNIPWMKEHGTPVIMDCIHSLQQPNQTSGVTG
                     GNPQLIGTVAKAAIATGADGLFIETHPNPSVAKSDGANMLRLDLLEPLLYQLVALRRT
                     VAVFGQ"
     gene            complement(1485..1706)
                     /locus_tag="VLL95_10925"
     CDS             complement(1485..1706)
                     /locus_tag="VLL95_10925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0080135 - regulation of cellular response
                     to stress [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HSR39417.1"
                     /translation="MKSIRELVEFNVFGVCTYLGEKFNIATSKIRLYFIYLSFLTFGS
                     PVILYFVAAFWMNLKRYIFFRKRNPLWYN"
     gene            1927..>3141
                     /locus_tag="VLL95_10930"
     CDS             1927..>3141
                     /locus_tag="VLL95_10930"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HSR39418.1"
                     /translation="MFDLSMIKAVYERFPGRVAAARKAVGRPLTLTEKILYAHLTQGD
                     ATQAYARGKDYVDFAPDRVAMQDATAQMALLQFMQAGRAKVAVPSTVHCDHLIVAKDN
                     SKVDLERAVNESKEVYDFLASVSNKYGIGFWKPGAGIIHQVVLENYAFPGGMMIGTDS
                     HTVNAGGLGMIAIGVGGADACDVMAGLPWELKMPKLIGVKLTGKLNGWTAPKDVILKV
                     AGILTVKGGTGAVVEYFGEGATAMSCTGKGTICNMGAEIGATTSTFGYDESMSRYLKA
                     TGREEVSALADGIAEHLTGDAEVYANPEHYFDQVIEINLSELEPHLNGPFTPDLATPI
                     SKMKEAAAANNWPTKVEVGLIGSCTNSSYEDISRAVSLAKQVAQKELKTKAEFTITPG
                     SEQVRYTIERDGF"
BASE COUNT          851 a          784 c          800 g          706 t
ORIGIN      
        1 aagtagtaat tgcaccaaaa ctcgccggcg tatttactga tgccgtaaac ggtaacgggt
       61 tcaataatgg tttgctgcgg gcaattctgt ttgggagaag taggaccaaa aacggcaatg
      121 gaggatggcc agtatacttt atggagcttt tcctcccttg ctatgtccag tacattgagc
      181 agcccctgca tattgagatg ccatgccagg ttaggatttt tttcgccagt ggcagaaagg
      241 atggcagcca gcaaatagat ctgcgtgatg ccttggcgga tcacctgcac atgcagcatt
      301 tccttattca ttacatcgag ggccacgtag gggccggtac cctccagcag tggattctgc
      361 tcccgcagat cactggcaat cacgttggca ttaccataaa tttttcggag cgccagcgtg
      421 agctccaccc caatttgacc ggaggctcct atcaccagga ttttctcttt taccatagca
      481 agcttttttg ttagatatca ggcaactgta ttgcccgcaa atgtaaaggg gttaaagttt
      541 gaagcactaa ttctgcacga tgtaccttcg ccccatggac aaaatgctga ccgatctttt
      601 tgcgaaacaa tcgtacgacc ccaacaattt cttcctgatt gctggcccct gtgtggtaga
      661 aagcgaggac ctggtgatgg aagtggcaga aactgtaagc ggcatctgca aaaagctgca
      721 aataccctac gttttcaaag ccagctatcg aaaagccaac cgtaccagcg ccagcagctt
      781 taccggcctg ggcgatgaag tgggattggg actaatcaaa aaagtgggcg acaaatacca
      841 actccctacc accagtgacg tgcatgcaca cgacgaatgt gccgaagcgg ccaaatacgt
      901 ggacatactg caaatcccgg ccttcctgtg ccggcagaca gacttgctgc aggcagcggc
      961 cgttaccggc aaggtggtga atgtgaaaaa aggtcaattc ctgagcgggc cttccatgaa
     1021 gtttgcagtg gaaaagatca ggaatgcagg caatgacaaa gtgatgctca ccgaaagggg
     1081 aaccaccttt ggctaccagg atttggtggt tgattatcgc aatattccct ggatgaagga
     1141 acacggtaca ccagtgatca tggattgcat ccacagtttg cagcaaccca accaaaccag
     1201 tggcgtcacc ggcggcaatc ctcaattgat aggtaccgta gccaaagcag ccattgccac
     1261 gggtgccgac gggttgttca ttgaaaccca tcccaatcct tccgttgcca aaagcgacgg
     1321 cgccaatatg ctccgcctcg atttgctgga acccttgctg tatcagttgg tggccctgcg
     1381 caggacggtg gcagtttttg ggcaataatc gtcagaaaat taaaagacta aaaaaggcag
     1441 catcccggag attgctgcct ttttcaattt cagtatttgc gagatcagtt ataccaaagg
     1501 ggattgcgct ttctgaagaa aatgtatcgc ttcaggttca tccagaaggc cgccacgaaa
     1561 tacaggatca ccgggcttcc gaaggtgaga aaagacaggt agataaaata gagcctgatc
     1621 ttggaggtag cgatgttgaa cttttcaccc aggtaggtgc aaacgccaaa aacattgaat
     1681 tcaacgagtt cacgaatgct tttcataggt gtggagtatt tgatgcaaat taggaatttg
     1741 atgaaatatg aaaattgaaa gactaaacaa aacttgtaaa caattttcaa aaacgtttaa
     1801 aaccggaaaa tgtttaagtc tcgttgttat ccaaggcagt tgcattcgga atgcctccgg
     1861 ttcgtaaatt cgctgcgctt ttgaagcccc ttgcaaggca tacattcatc ctacaaatac
     1921 agtactatgt tcgatctctc catgatcaaa gctgtctacg aacgattccc cggccgtgtt
     1981 gccgccgcca ggaaagcagt aggccgccct ttaacgctga ccgaaaagat tttgtacgcc
     2041 caccttaccc agggtgatgc cacccaggcc tatgcccgtg gtaaagacta cgtggatttt
     2101 gcccccgacc gtgtggccat gcaggatgcc accgcccaaa tggccctgct gcaattcatg
     2161 caggccggcc gagccaaggt ggccgtaccc agtaccgtgc attgcgacca cctcattgta
     2221 gcgaaagaca acagcaaagt ggacctggaa agggctgtga acgaaagcaa agaagtgtac
     2281 gacttcctcg cctctgtttc caataaatat ggcatcgggt tctggaagcc cggcgctggt
     2341 atcatccacc aggtggtttt ggaaaactac gccttccccg gtggcatgat gattggtacc
     2401 gacagccaca cggtaaacgc cggcggcctt ggcatgattg ccatcggcgt gggtggtgcc
     2461 gatgcctgcg atgtgatggc cgggctcccc tgggaattga aaatgcccaa actgataggc
     2521 gtaaaactga ccggaaaatt gaatggctgg actgcaccta aagacgtgat tctcaaggtg
     2581 gcaggtatac ttaccgtaaa aggtggcaca ggtgctgtgg tggaatattt tggagaaggt
     2641 gccaccgcca tgagctgcac cggcaaagga accatctgta atatgggtgc cgaaattggt
     2701 gccaccacct ccacatttgg ctacgacgaa agcatgagcc gctacctgaa agctaccggc
     2761 cgggaagaag tgtctgccct ggccgatggc attgccgaac acctgactgg cgatgcggaa
     2821 gtgtatgcca accccgagca ctacttcgac caggtgattg aaatcaacct gagcgaactg
     2881 gagccgcacc tgaacggccc attcacccca gacctcgcta ctcccatcag caaaatgaag
     2941 gaggctgccg ccgccaataa ctggcccacc aaagtagaag taggtttgat tggcagctgt
     3001 accaactctt catatgaaga catcagccgg gctgtaagtc ttgctaaaca agtggcgcag
     3061 aaagaattga aaaccaaggc agaatttacg ataactccag gatctgaaca ggtgcgttac
     3121 accatcgaaa gggatggttt c
//
LOCUS       DATIQF010000644         3929 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_132017,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000644 DATIQF010000000
VERSION     DATIQF010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3929)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3929)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3929
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132017"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(32..1291)
                     /locus_tag="VLL95_10935"
     CDS             complement(32..1291)
                     /locus_tag="VLL95_10935"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSR39419.1"
                     /translation="MADIFERLVKNYGPLGQHRERAHGYFAFPKLEGPIGPHMKFRGK
                     EMIVWSLNNYLGLANHPEIRKVDAEATEQFGLAYPMGARMMSGNSNYHEQLEKELAEF
                     EHKEDAILLNFGYQGIMSAIDALCGRHDVVVYDAESHACIIDGLRLHPGHRYVFKHND
                     VDDCEKQLQRATQLIEKQKAGGILVITEGVFGMAGDQGRLKEICDLKQKYEFRLLVDD
                     AHGFGTLGETGAGAGEAQGCQDDIDLYFSTFAKSMASIGAFLAGPRTIIDYIRYNIRS
                     QIFAKSLPMPLVIGNLKRLDMLRTMPELKAKLWENATKLQEGLKARGFDIGKTDSVVT
                     PVYMKGGVEEATAMVMDLRENYGIFCSIVVYPVIPKGHIIYRLIPTTSHSDEDIERTL
                     QAFSETKQKLDAGAYKVEAIPDMAEKA"
     gene            1520..3160
                     /gene="pafA"
                     /locus_tag="VLL95_10940"
     CDS             1520..3160
                     /gene="pafA"
                     /locus_tag="VLL95_10940"
                     /EC_number="3.1.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF042991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004035 - alkaline phosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0019203 - carbohydrate phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase PafA"
                     /protein_id="HSR39420.1"
                     /translation="MGKISCPVALLVSLTLTLSVSQGVSQPYNGKRPKLVVGLVVDQM
                     RWDFLYRYYDRYTDAGFKRLIQQGFSAENTMIPYSQTVTAAGHACVYTGSIPAVNGIM
                     GNEWYDKQLRKEVYCVEDESVKIIGGVPASEPMSPRNLWTTTISDELRLATNFRSKVI
                     GVAIKDRGSILPAGHTGTAYWYEGSNGNWVSSTWYMNELPSWVQQFNDRRWVDSLYKN
                     DWNTLYPISTYVQSDADNVSYEGRSAGDTTPTFPHRLRHLIGKNYGAIRSTPMGNTLT
                     LSFAKEALKAEQLGKDGITDLLAVSLSSPDYIGHQYGPNSIEIEDNYLRLDRELAEFF
                     AFLDKEVGKGEYLFFITADHGVAHVPAFLKKNKMDVKTVPSNISEINNKVEAKFGVRN
                     AVISSANYHLYLNDLAIDTLDKDKEEIESFIISELVKAPHIAGAFSYNELDNAVLPAL
                     LKEKFVSGYNQKRSGDVQLIVKSGYFYGGATGTTHGSWYPYDAHIPLVFMGWGVTPGR
                     TNRTTSMSDIAPTLAAMLRIQMPSGTTGTPITEMLPVR"
     gene            3254..>3929
                     /locus_tag="VLL95_10945"
     CDS             3254..>3929
                     /locus_tag="VLL95_10945"
                     /inference="COORDINATES: protein motif:HMM:NF024762.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HSR39421.1"
                     /translation="MSGHEKEINALLTLLDDTDKEVLVHVEEKLLSYGESVIPNLENF
                     WEQAFDNELQERIEMIIHRIHFSKLVQEVTNWNNGESDLLYGAFLVAKYQYPELQHVP
                     TLQEIERIRRNIWLEMNSYLTPLEQIKIMESILFGFYKFRGGELDYSKPNDFMVHKVV
                     ESKKGNALTNGILYLAFAELLDLPIRAINIPRQFVLAWFSHQTLFSNDFTDGNPAEKI
                     KFFIDPN"
BASE COUNT         1018 a          982 c          930 g          999 t
ORIGIN      
        1 gttcatttgt attctttcgg cagtttctga gttacgcctt ttcggccatg tcagggatgg
       61 cttcaacctt ataggcgccg gcatccagct tttgcttggt ttcagaaaac gcctgcaatg
      121 tgcgctcaat atcctcgtcg gaatgggaag tggtggggat aaggcgataa ataatatgac
      181 ctttcgggat caccgggtac accactatgg aacagaagat tccatagttc tcacgaagat
      241 ccatcaccat ggctgtagct tcttctaccc cacctttcat atacaccggg gttaccactg
      301 aatcggtttt gccgatatcg aaaccgcggg ccttcaagcc ttcctgcagt ttggtggcat
      361 tttcccacaa cttggctttg agctcgggca tggtgcgcag catgtcgagg cgcttgaggt
      421 taccaatcac caatggcatt ggcaggctct tggcaaagat ctggctgcgg atattgtagc
      481 ggatataatc gatgatggta cgaggaccgg caaggaaagc accaatgctg gccatcgatt
      541 tggcgaaagt gctgaagtac aggtcaatat catcctggca gccctgcgct tcgccggcac
      601 ctgcaccggt ttcgccgagt gtgccaaaac catgagcatc gtccaccaac aagcggaatt
      661 catatttctg cttcaggtcg caaatttcct tgaggcggcc ctggtcgccg gccatgccaa
      721 acaccccttc ggtgataacc agaatgccac cagccttttg cttttcaatc aactgggtgg
      781 ctcgctgcaa ctgcttttca cagtcatcca catcgttgtg cttaaacacg taacgatgac
      841 cggggtgcaa acgcaaacca tctataatac aggcatggct ttcggcatcg tacactacta
      901 catcatggcg gccgcacagt gcatcaatgg cactcatgat gccctggtag ccaaagttca
      961 aaaggatggc atcttcttta tgttcaaatt cagccagctc tttttccagt tgctcatggt
     1021 agttgctgtt tccgctcatc atgcgggctc ccattgggta agccaggcca aattgttcag
     1081 tggcttctgc atccaccttg cggatttcag gatggttggc caacccgagg tagttgttca
     1141 ggctccatac gatcatttcc ttgccacgaa acttcatgtg aggtccgatg gggccttcca
     1201 gtttggggaa agcaaaatat ccgtgggccc tttcgcgatg ttgcccgagg ggtccatagt
     1261 tttttacgag cctttcaaaa atgtctgcca taatattctt gcgattttct ataaaaacaa
     1321 caggtttagc cctgcaaatt tgggcgcaaa tgtaagcttt agatccggtt ggggcaaaag
     1381 acggcccttc cacttttgca cctgcacgcc tggcggacct gattcctgta attgattgtg
     1441 aatgaattct taacaggcaa atcatgaatc gcttttcttt gcccgataca tttgttgtcc
     1501 gtttttaaaa atgtaaccta tgggaaaaat ctcatgccct gttgccttgc tggtcagttt
     1561 gacgctcacc ctatctgtct ctcaaggcgt atcgcaacct tacaacggca aacggcccaa
     1621 actggtggtg ggtcttgtgg tagaccaaat gcgatgggat tttttgtacc gctattatga
     1681 tcgttatacg gatgcaggct tcaagcgcct gattcagcag ggattcagcg ctgaaaacac
     1741 catgatcccc tattcacaaa cagttacagc cgcaggccat gcctgcgttt acacaggttc
     1801 gatacctgcc gtcaatggca tcatgggtaa cgaatggtac gataagcaat tgcgaaagga
     1861 agtgtattgc gtggaagatg aatcggtgaa aatcattggt ggcgtgccgg cctcggagcc
     1921 catgtcgccc cgcaaccttt ggaccactac tatttcggat gaattgcgcc tggccaccaa
     1981 tttccgatca aaggtgattg gcgtagccat caaagatcgt ggttccattt tgccagccgg
     2041 ccatacaggc acagcctatt ggtacgaagg cagcaacggc aactgggtat cgagtacctg
     2101 gtatatgaat gaactgccat catgggtgca acaattcaat gaccggagat gggtagattc
     2161 cctgtataaa aacgactgga acacacttta ccctatcagc acctatgtgc aaagcgatgc
     2221 tgacaatgtt tcctacgaag gccgaagtgc tggcgacact acgcccactt ttccgcaccg
     2281 actgcgccat ctgattggca aaaactatgg tgcgattcgc tccactccta tgggcaatac
     2341 actcaccctg tcatttgcca aagaagcttt gaaagccgaa cagttgggaa aagatggcat
     2401 tactgacctg ctggcagtta gtctttcatc gcccgattat attggccatc aatacggccc
     2461 taacagtatt gaaattgaag acaactatct ccgccttgac cgtgaactgg cagaattctt
     2521 cgccttcctg gacaaggaag tgggcaaagg cgagtatctt tttttcatca ctgcagacca
     2581 tggcgtggca catgttcctg catttctgaa aaagaacaag atggatgtaa aaacggtccc
     2641 gtccaatatt tctgagatca ataataaagt ggaggcgaaa ttcggtgtca ggaatgcagt
     2701 aatatcctcg gccaattacc acctgtatct caatgactta gccatagata ccctggacaa
     2761 ggacaaggaa gaaatagaat ccttcatcat ttcggagttg gtaaaagcgc cgcatatagc
     2821 cggcgccttc agttacaatg aattggacaa tgccgttctc cccgctttgc tgaaggagaa
     2881 atttgtgagc ggttacaatc aaaaaagatc aggtgatgtg cagttgatag tgaaatctgg
     2941 ctacttttat ggaggcgcaa ccggtacaac gcacggttcc tggtatcctt atgacgccca
     3001 tatcccgctg gtattcatgg gatggggtgt tacaccgggc agaaccaacc gtacgacctc
     3061 aatgtccgac attgccccca cgctggccgc tatgcttcgc atacagatgc caagtggtac
     3121 aaccggaacc ccgataacag aaatgctccc tgtgcgttag cacacacatt cgcatgctat
     3181 gtgcataaac tgatttggca agcgctcagg gggtagggaa ttttaattac ttacccatta
     3241 aacgctaact gccatgagtg gtcatgaaaa agagatcaac gctttgctga cattgctgga
     3301 cgacacagat aaagaggtgc tggtgcatgt ggaagaaaaa cttctcagct atggcgaaag
     3361 cgtgattccc aaccttgaga acttctggga acaagccttt gacaacgaac tgcaggaacg
     3421 cattgaaatg atcatacacc ggattcattt cagcaaactt gtgcaggaag tcaccaactg
     3481 gaacaatggc gagtcagacc ttttgtatgg tgccttcctg gtggccaaat accaatatcc
     3541 tgaattgcag catgtaccca ccttgcagga aatagaacgc atccgccgca acatttggct
     3601 ggagatgaac agctatctta ccccgctgga acaaataaaa atcatggaaa gcatcctctt
     3661 tggattctac aaattcaggg ggggcgaatt ggactattca aagccaaacg acttcatggt
     3721 ccataaagta gtggaaagca aaaagggcaa tgcgctaacc aatggcatcc tgtacctggc
     3781 ttttgcagaa ttgctcgacc tgcccatcag ggccatcaat attccccgcc agtttgtgct
     3841 ggcctggttc tcccaccaga cacttttctc caatgacttt actgatggca accctgccga
     3901 gaagatcaaa ttctttattg atccgaaca
//
LOCUS       DATIQF010000645         2871 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_208137,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000645 DATIQF010000000
VERSION     DATIQF010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2871
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208137"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..886
                     /locus_tag="VLL95_10950"
     CDS             <1..886
                     /locus_tag="VLL95_10950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39422.1"
                     /translation="EPSIKESDLLIAVGQSGAEIKMMAEYARQINVPLISSTYPNDGG
                     VRGNEYFYMANSSLRTHCQGIYKYLQQNHATSNIIAFTRKGNFEPYLKSWLDETAAQT
                     ASVRLRIQYITLTDSFSVSNVQTMLDSTRQNVVLGVTLDEAFSKRLVQSLSALAPNYQ
                     SLVMGMPTWDEIDFRRHEFKGVEVMYSTPFVSLSANIDAYNAMAQYYSKNLNSRPSDM
                     ALKGYELTYRYIKTLTKYPEPTDFARHVNDGAFKVFCDFNFQPVRNPASAAVTVEYYE
                     NKKLYFVRKLDGNVKGIY"
     gene            complement(1492..>2871)
                     /gene="carB"
                     /locus_tag="VLL95_10955"
     CDS             complement(1492..>2871)
                     /gene="carB"
                     /locus_tag="VLL95_10955"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: protein motif:HMM:NF003671.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HSR39423.1"
                     /translation="TMGGQTALNLAKEAEELGIWKQYNVRLIGVDIKAIDKAEDREQF
                     RQWMIQLGVPVAPAKTANSFLEGKEFAQEIGFPLVIRPSFTLGGTGGGFVHNKDFLDE
                     ALNRGLTASPIHEVLVEKAVLGWKEFELELLRDNADNVVIICTVENFDPMGVHTGDSI
                     TVAPAMTLSDTAFQLMRNTAIMMMRDLGNFAGGCNVQFALNPETEEIIAIEINPRVSR
                     SSALASKATGYPIAKIAAKLAIGYNLDELKNQITQSTSAYFEPALDYVIVKIPRWNFD
                     KFKGADDTLGLQMKSVGEVMGIGRSFNEAVQKACQSLENEAVGLGYYGKSLMHAEELL
                     EYIKTPKWDRVFRIKDALMAGVSVKSIVEATLIDRWFIYQIRELCKIEKEIGNYTIDT
                     LPKELMREAKKSGFSDEQIARIMRNCTADEVYEKRKAWGITRVYKLVDTCSAEFEAKT
                     PYYYSTFEG"
BASE COUNT          711 a          797 c          686 g          677 t
ORIGIN      
        1 ggaacccagc ataaaagaat ccgatttgct gatagccgtg gggcaaagtg gcgccgaaat
       61 aaaaatgatg gccgaatacg ctcgccaaat caacgtgcca ctcatcagtt ccacctaccc
      121 caacgacggc ggcgttcgcg gcaatgaata tttctacatg gccaattcca gcctgcgcac
      181 ccattgccag ggcatttaca aatacctgca gcaaaaccac gctaccagca atattatcgc
      241 ctttacccgc aaaggcaatt ttgagcccta cctcaaaagc tggctcgatg aaacggcggc
      301 acaaaccgcc tcggtaaggc tgaggataca atacatcacg ttgactgatt ctttcagcgt
      361 gagcaatgtg caaaccatgc tcgacagcac ccggcagaat gtggtgctcg gcgtcaccct
      421 cgacgaagct ttcagcaaac gactggtgca aagtctatcg gcactcgccc ccaattacca
      481 aagcctggtg atgggcatgc ccacctggga tgaaattgat tttcgacgtc atgaattcaa
      541 gggcgtggaa gtaatgtaca gcacgccgtt tgtttcgctt tccgccaata ttgatgccta
      601 caatgccatg gcacagtatt acagcaaaaa tctcaacagc cgacccagtg atatggcgct
      661 gaagggatac gaactcacct accgctacat caaaacactg accaaatatc ccgagcccac
      721 cgatttcgcc cggcatgtaa atgacggggc tttcaaggtg ttctgcgatt tcaactttca
      781 gcccgtacgc aacccggcct ccgcagctgt aacagtggag tattacgaaa acaaaaaact
      841 gtatttcgta agaaaactgg atgggaatgt gaaagggatt tactgaggga gatttcaccg
      901 ccaagacacg aagacgcaaa gctagatttc ttcttagcgc ctttgcgcct ctgcgagaat
      961 tcacctttag ccaagaaaca cgaaaagtgc acgccaagac gcgaagacgc aaagattgat
     1021 ttcttcttag cgcctttgcg cccttgcgag aattcatctt tagccaagaa acacgaaaag
     1081 tgcacgctaa gacgcgaaga cgcaaagatt gatttctgct tagcgccttt gcgcccctgc
     1141 gagaattcac ctttagccaa gaaacacgaa aagtgcacgc caagacgcga agacgcaaag
     1201 attgatttct gcttagcgac tttgcgcctc tgcgagcata cattcaccgc gaagaaacga
     1261 agacgcgaag ggaaaaactg aactgcactt taatccatct tcttggcgcc tttgcgcctt
     1321 agcgagaata cattgaccgc gatgaaacga agacgcgaag gaaacaactg cactgcgctt
     1381 tcttccatct tcttagcgtc ttagcggtaa aaccccgcag catttcaacc aaataaaaaa
     1441 cgggtgctca gtctgactgg cacccgtttt tctattgaaa aacctgtcgg cttatccttc
     1501 aaaagtgctg tagtagtaag gcgttttcgc ttcaaactcg gcgctgcagg tatctaccag
     1561 tttgtaaact cgggtgatgc cccaagcctt gcgcttttca tacacttcat cggcggtgca
     1621 gttgcgcatg atgcgggcaa tctgctcatc gctgaagccg cttttcttgg cttccctcat
     1681 cagctccttt ggcagggtat caatggtgta attgcctatc tccttttcaa tcttgcacag
     1741 ttccctgatc tggtaaatga accagcggtc gataagcgta gcctccacga tactcttgac
     1801 cgatacaccg gccatcaacg cgtctttgat cctgaaaacg cggtcccact tcggcgtctt
     1861 gatgtattcc agcaattcct cggcgtgcat caggcttttg ccatagtagc ccaggcccac
     1921 ggcttcgttc tccaggcttt ggcaggcttt ctgcacggct tcattaaagc tgcggccaat
     1981 gcccatcact tcgcccacgc ttttcatctg caaacccagg gtgtcatcag cccctttgaa
     2041 tttgtcgaag ttccagcggg gaattttcac gatcacataa tccagcgccg gctcaaaata
     2101 ggccgaggtc gattgggtga tctggttttt cagttcatca aggttgtagc caatggccag
     2161 cttggcggct attttggcaa tgggataacc ggtggccttt gacgccagcg ccgatgagcg
     2221 gctcacacgc gggttgatct cgatggcgat gatctcttcg gtttcgggat tgagggcaaa
     2281 ctgcacgttg caaccgccgg caaaattgcc caggtcacgc atcatcatga tggcggtgtt
     2341 gcgcatcagt tggaaagcag tatcgctcag cgtcatggcc ggcgccacag tgatgctgtc
     2401 tccggtatgc acacccatgg ggtcgaagtt ctccacggta caaatgatca ccacgttgtc
     2461 agcattgtca cgcagcagtt ccagctcgaa ttccttccag cccaacacgg ccttttccac
     2521 cagcacttcg tgaatgggcg aagcggtcaa accgcggttc agggcttcat cgaggaagtc
     2581 tttgttgtgc acaaaaccac cgccggttcc acccagggtg aaggaaggac ggatcaccaa
     2641 ggggaaacca atttcctgcg caaattcctt gccttccaaa aagctgttgg cggttttggc
     2701 aggggctacc ggtacgccca gttgtatcat ccattggcga aactgttcgc ggtcttcagc
     2761 cttgtcaatc gccttgatat ccacgccgat cagccgcaca ttgtactgct tccagatgcc
     2821 cagttcttcg gcttccttgg ccaggttgag tgccgtttgg ccgcccatgg t
//
LOCUS       DATIQF010000646         2031 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_25644, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000646 DATIQF010000000
VERSION     DATIQF010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2031
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25644"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..245)
                     /locus_tag="VLL95_10960"
     CDS             complement(<1..245)
                     /locus_tag="VLL95_10960"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmG family class I SAM-dependent
                     methyltransferase"
                     /protein_id="HSR39424.1"
                     /translation="MNLSIVTKYFSDFTPEQLRQLQALEGLYKEWNEKINVISRKDID
                     SLYLKHVLHSLSIAALFDFQPGMQVIDIGAGGGFPSVP"
     gene            complement(379..1512)
                     /locus_tag="VLL95_10965"
     CDS             complement(379..1512)
                     /locus_tag="VLL95_10965"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR39425.1"
                     /translation="MNWNDILQHWPFMVFILLCASVVIHLFYQLFFFLRLVLFKTQDK
                     FQSQTHPVSVVICARDEAHNLEKNLPPILTQQYPTTHEVMVVNDNSFDDTKFFLEELE
                     KIFRHLKPVNLTQEAKHIPGKKYPLSIGIKSSKYEVMLLTDADCRPASEWWIQKMQDA
                     YHDGHEIVLGYGAHDKRPGFFNKLVRFETFHTALQYLSYALAGMPYMGVGRNLSYRKS
                     LFYAAKGFSSINHIPGGDDDMFINKVANKHNTAIVVDPDAFTYSEPAENFSQWWKQKN
                     RHYSTAKFYKPLHQFLLGLYALSNWMFWPLLVTAAIFYHWQLALPLLAVRWLAQGIVM
                     GKAMQRLKENDLIPLFWLFDIWQFFYYIIFSLSLFVKPKSSWK"
     gene            1830..>2031
                     /locus_tag="VLL95_10970"
     CDS             1830..>2031
                     /locus_tag="VLL95_10970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39426.1"
                     /translation="MKAFVLLALSLMMMGANCNKDKIKNYEEIVFTFDMPFTVKPGTE
                     SIRVGDTLTVFAEISDSMLDLRS"
BASE COUNT          482 a          466 c          552 g          531 t
ORIGIN      
        1 ggtacagaag gaaaaccgcc accggcgccg atgtctatca cctgcatgcc cggctgaaaa
       61 tcgaacaggg cagcaatgct cagcgaatgc aatacatgct tcaggtagag gctgtcgatg
      121 tctttgcggg agatgacgtt gatcttttca ttccactcct tgtacaagcc ttccagcgcc
      181 tgcaattgcc gcagttgttc cggtgtaaag tcggagaagt atttggtaac tatggataag
      241 ttcacgagtt cacatgtttc aaggttcaca agtttgaaag ttcacaggtt cacaagttca
      301 cgagttggta aagtctattt ccagaaaacg ttttcatccc tcattccctc attcacccat
      361 tgactcattc actatttcct atttccaact actcttcggc ttcacaaaca gcgacagcga
      421 gaagatgatg tagtagaaga actgccagat atcaaacagc cagaacaatg ggatgaggtc
      481 attctccttc aggcgttgca tggctttgcc cattacaatg ccttgtgcca gccagcgcac
      541 ggccagcagc ggcagggcca gttgccaatg gtaaaaaatg gcggccgtca ccagcagggg
      601 ccagaacatc cagttgctca gcgcatacag gcccagcaaa aactggtgca gtggtttgta
      661 aaacttggcc gtgctgtagt ggcggttttt ctgcttccac cactgcgaaa aattttcagc
      721 cggttcgctg taggtgaatg catccggatc taccacgatc gccgtgttgt gcttgttggc
      781 cactttgttg atgaacatat catcatcgcc gccggggatg tggttgatgc tggaaaaacc
      841 tttggctgcg taaaacaaac ttttgcggta gctgaggttg cggcccacgc ccatgtaggg
      901 catgccggcc agcgcatagc tcaggtattg cagggcggta tgaaaggttt cgaaacgcac
      961 cagcttgttg aaaaaaccgg gccgcttgtc gtgggcgcca tagcccaaaa cgatctcgtg
     1021 gccatcgtga taggcgtcct gcattttctg tatccaccat tcgctggcgg ggcggcagtc
     1081 ggcatcggtc agcagcatca cttcgtattt gctgctcttg atgccaatgc tcagcgggta
     1141 ctttttgccg ggtatgtgtt tggcttcctg tgtaaggttc accggcttca ggtggcggaa
     1201 tattttctcc agttcttcca ggaagaattt ggtgtcgtcg aaagagttgt cgttcaccac
     1261 catcacctca tgcgtggtgg ggtactgctg cgtaaggatg gggggcaggt tcttttcgag
     1321 gttgtgggcc tcatcccggg cgcagatgac cacgctgacc gggtgggttt gcgactggaa
     1381 tttgtcctgg gttttgaaca gtaccagccg caggaaaaag aagagttggt aaaacaggtg
     1441 aatgaccacg ctggcgcaca gcaatataaa taccatgaaa ggccagtgtt gcagtatatc
     1501 gttccagttc atgcttaatg ctaattggtg ggttgggggt tggaagccgg gggcctccgc
     1561 acattcgcaa cgagcaaaaa taggggttgg cgccccggca ggcgtggcct gtggaaattt
     1621 ggaaggaagg gtggataaat agccttgcaa gggcagcggc cattgcggcg gggtgattgt
     1681 ttcctggttt ttggccaaag caggtatgac gcttgtcagt aattccggca ttggccggtt
     1741 ttaacttaca cgtattgctg caagtgtaag tgtattgtgt tcatttcttt taattgcaac
     1801 ctatgatttg caccacccaa tggaaatatg tgaaggcatt tgtactactg gcgctcagtt
     1861 tgatgatgat gggcgcaaat tgcaacaagg ataaaataaa gaactacgag gaaattgtct
     1921 tcacgtttga catgccattt acggttaagc caggaactga atccataaga gttggggaca
     1981 ccctaactgt ttttgctgaa atttcagatt caatgcttga tttacgcagt a
//
LOCUS       DATIQF010000647         1856 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_223233,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000647 DATIQF010000000
VERSION     DATIQF010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1856
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223233"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..216)
                     /locus_tag="VLL95_10975"
     CDS             complement(<1..216)
                     /locus_tag="VLL95_10975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39427.1"
                     /translation="MTGMMLASVAAMAQPKAPSTMSNPLAQMLVFIMVLLLVAIAILG
                     NVVNNAASLFRDKLRKQRESGAAGEGSS"
     gene            complement(284..445)
                     /locus_tag="VLL95_10980"
     CDS             complement(284..445)
                     /locus_tag="VLL95_10980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39428.1"
                     /translation="MKFINYLESITGVSIFPLTGLIIFVIFFTVVSLYVFTADKKKME
                     HDSQLPLEQ"
     gene            complement(457..>1856)
                     /gene="ccoO"
                     /locus_tag="VLL95_10985"
     CDS             complement(457..>1856)
                     /gene="ccoO"
                     /locus_tag="VLL95_10985"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF011055.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HSR39429.1"
                     /translation="IFLYIWAGPHHLLYTALPDWAQSLGTVFSVMLIFPSWAGMLNGL
                     MTLRGAWDKVREEPILKFFVVALTCYGMSTFEGPMLSLKNVNAISHFTDWTVAHVHVG
                     ALGWNGFLTFGALYFLVPRLFGTQLYSKKLAANHFWIGTLGIILYAIPMYWAGFSQAL
                     MWKEFTPEGTLKYQFLQTVTNIRPMYILRGVGGSLYLVGFFLMVYNLWKTVKSGVFVP
                     TEYGEAPALSKEYAPAHGYSFWHAWIERRPVQMLVFSLVAVAIGGLFELIPTFLVKSN
                     VPTIAAVKPYTPLELEGRDIYIKEGCYTCHSQMVRPFRDEVARYGEYSKAGEFVYDHP
                     FQWGSKRTGPDLHRVGGKYPDSWHYNHMMKPTLMSPGSMMPNYPWLLDNDLDTSLTAA
                     KIKAMRTLGVPYEEGYETIAVSDLNKQAAAIAEGLKKDKINTAPNKEIIALIAYLQRL
                     GTDIKAAGQQGVTIK"
BASE COUNT          483 a          456 c          452 g          465 t
ORIGIN      
        1 gctgctgcct tcgccggcag cacccgattc acgctgcttg cgcagcttgt ctctgaacaa
       61 ggatgcggcg ttgtttacca cattgcccaa aatggctatg gctaccagca gcaggaccat
      121 gataaacacc agcatttgcg ccagcgggtt actcattgtg ctgggagcct tgggttgtgc
      181 catagcagct actgaagcca gcatcattcc tgtcatcaac agggttggtt ttagtttagc
      241 aaactttgaa aacatatgtt tcaatttcag gtggtgatcg taattattgt tcaagaggca
      301 actggctgtc atgctccatt ttctttttat cagcagtaaa cacataaagg gataccacag
      361 taaaaaagat tacaaaaatg ataaggcctg tgagcggaaa aatgctgacg ccagtgatgc
      421 tttccaggta attgatgaat ttcattgatc tcgcatttat ttaatggtga ctccctgctg
      481 accggctgct ttgatatcag tacccaacct ttgcaggtag gctatcaatg caatgatctc
      541 cttgttgggc gctgtgttga tcttgtcttt cttcaatcct tctgcaatag ccgctgcctg
      601 cttgttaaga tcacttactg caatggtttc atatccttct tcataaggaa cacccaatgt
      661 gcgcatggcc tttattttgg cggcagtcaa tgatgtgtct aggtcgttgt ccaacaacca
      721 tggatagttg ggcatcatgc tgcccgggct catgagtgta ggcttcatca tgtggttgta
      781 gtgccagctg tcaggatact tgccccctac acgatgcaga tcgggaccag tacgcttgct
      841 gccccactgg aacgggtggt catacacaaa ttcaccggct ttgctgtatt caccgtagcg
      901 agccacttca tccctgaaag gacgcaccat ttgtgagtga caggtatagc aaccttcttt
      961 gatgtagata tcacgacctt ccaactcaag cggggtatat ggtttcaccg ctgctatggt
     1021 cggtacattc gatttcacca ggaaagtcgg gatcaattca aacaaaccac caatggcaac
     1081 agccaccagg ctaaacacca gcatttgaac cggacgacgc tcgatccagg catgccagaa
     1141 ggaatagcca tgggcaggtg catactcttt tgacaaagca ggtgcttcac catattcagt
     1201 gggtacgaat acgccactct tcactgtttt ccaaaggttg tataccataa ggaaaaagcc
     1261 taccaggtac aatgaaccac ctacaccacg caaaatgtac atggggcgga tgttggtcac
     1321 ggtctgcagg aactggtact tcagtgttcc ttccggagtg aattccttcc acatcaatgc
     1381 ctgtgagaag ccagcccagt acatggggat ggcatacagg atgataccga gtgtacctat
     1441 ccagaagtgg ttggcagcaa gtttcttgct gtacagctgg gtgccaaaca agcggggaac
     1501 caggaagtat aaggcaccga aagtgagaaa gccgttccag cccaatgcac cgacgtgtac
     1561 gtgtgcaact gtccagtcgg tgaagtgaga aatggcattc acgtttttca aactgagcat
     1621 gggaccttcg aaggtgctca tgccatagca ggtaagcgcc actacaaaga atttgaggat
     1681 aggctcttca cgaaccttat cccatgcacc acgcaaggtc atcaaaccgt tgagcatacc
     1741 cgcccatgag gggaagatga gcattacact gaatactgta cccagcgact gtgcccagtc
     1801 gggcaacgcg gtgtacaaca agtggtgagg tccggcccag atgtacagga agatca
//
LOCUS       DATIQF010000648         2021 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_192737,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000648 DATIQF010000000
VERSION     DATIQF010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192737"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(170..982)
                     /locus_tag="VLL95_10990"
     CDS             complement(170..982)
                     /locus_tag="VLL95_10990"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HSR39430.1"
                     /translation="MRKAVQPAWLFAFAAIVSLFFSCKPPKDMSSEYLYFGDADSIKK
                     VMTQYSDYRIRTDDVLAIGISTAGINQEQLIPFAQVIKDEEGKEAKQALPNYTVDTDG
                     NIQLPLVGKVRLQGLTRKEAQALLEQRLGDYISRPSVSVLVKNFSVTVLGEVKAPGRH
                     PMPNTNANLLDAIAAAGDLTPYGDRKQLLLMRQNEVGETEFRRLDITSAASFMSQESF
                     QLQQNDVLYVPTNKRKILESTTDTQKKYQTYSLILAAITTFTVIANLIIAVR"
     gene            complement(1365..>2021)
                     /locus_tag="VLL95_10995"
     CDS             complement(1365..>2021)
                     /locus_tag="VLL95_10995"
                     /inference="COORDINATES: protein motif:HMM:NF023367.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase C-terminal domain-containing
                     protein"
                     /protein_id="HSR39431.1"
                     /translation="DAWTHEEGFDLSYPWKAFHAMVDIAGGKKTANYLDSVLTEVYSV
                     FPANALQMYFTSNHDENSWNKADYGTMPGAVHAPFAVLTQTWARSVPLIYSGQEEPFL
                     DSISFFYKDTITFGKYERAPFYQALLNLRASNPALAANAAYTKINAGDPKQVFAFTRE
                     KEGKKVLVVLNLSGKEAAVTLPDAGLAAKPSTFISSMPEVPAGASYTLAPWGYAVYAY
                     "
BASE COUNT          526 a          467 c          507 g          521 t
ORIGIN      
        1 aataacctac ggtgaacgaa atgagcaaag aagcaatgag caatggaaaa aatgccaggt
       61 actgcaaaat gcggtctttg atggaaagac ctccctgttt gcgctggtta atgatgctta
      121 gcgggtcgaa cgaaaatggt gaagccataa tgaagtaagg tgaaagatct tagcgaacgg
      181 cgatgatcag gttggcaata acggtaaagg tggtaatggc ggcaagaata agagagtacg
      241 tctggtattt cttctgggta tcggtagtgg attcgaggat cttacgcttg ttggttggaa
      301 catacaaaac gtcattctgc tgcagttgga acgactcctg gctcatgaaa ctggcggctg
      361 aagtaatatc caggcgacga aattcagttt cgcccacctc gttctgtcgc atcagcagca
      421 attgtttcct atcaccatag ggcgtaagat caccggcagc agcaatggca tccaacaggt
      481 tggcattcgt attgggcatc gggtgtcgcc cgggagcctt tacttcgccc aaaactgtaa
      541 cactgaaatt tttcaccaaa actgaaaccg aaggtcttga gatataatcc cccagccttt
      601 gctccaacag cgcctgtgcc tcctttcggg taagcccctg gagtctcacc tttcccacca
      661 gaggcaattg gatattgcca tcggtatcga cagtgtaatt tggaagtgct tgtttggcct
      721 ctttgccttc ttcgtctttt atcacctggg caaaaggaat cagttgttcc tggttgatac
      781 ccgcggtgct gatgccgatc gccagcacat catctgtccg aatacggtaa tcggaatatt
      841 gagtcattac tttctttatg gagtctgcat ctccgaaata gaggtactcc gaactcatgt
      901 ctttcggagg tttacaggaa aagaacagac ttacgatggc agcaaatgca aataaccatg
      961 ctggttgaac ggcctttctc atgaagagtg tttgaaaaaa tttgagcaaa agtaggtggt
     1021 tgaacctttt gaagcaggta cagcttgtgc gattgaattc cagtgcattg tagaaacttg
     1081 aatcctggag atgctggcat cccggaattt cacaattgcc ggcgtgcatg cctccggctc
     1141 tgtcagtcac accgacaggt cttcaaaaca gccagagaca tcgttaacga gtaacaaaat
     1201 tactcgttgt tcgtcatctt ttactattcg ctgccgtttt ttttggttga tctgcaagac
     1261 attatgccag caattgtgga aaaatcaggg ttgcgggaca ttggcccggc atcaaagaga
     1321 aagggagagg caagcctctc cctcttatag aatttaccag gatcttaata cgcatacacc
     1381 gcataccccc atggtgccaa tgtgtaggag gcaccggctg gaacttcagg catgctgctg
     1441 ataaacgtgg acggcttggc agccaggccg gcatcgggca gggtgacggc cgcttctttg
     1501 ccactcaggt tcagcactac caataccttt ttgccctcct tttccctggt aaaggcaaat
     1561 acctgcttcg gatcgcctgc gttaattttt gtataggccg cattggcagc caaagcaggg
     1621 ttagaggcac gcaggttcag caatgcctgg taaaatggcg ccctttcgta cttgccaaac
     1681 gtgatggtat ccttataaaa gaaactgata ctgtccagga aaggctcttc ctgtccgctg
     1741 taaatgagtg gtacactgcg ggcccaggtt tgggtgagca cagcaaaagg cgcatgaacg
     1801 gctccgggca tggtgccgta gtcggccttg ttccagctgt tttcatcgtg gttgctggtg
     1861 aaatacattt gcaaagcgtt agccggaaaa accgagtaaa cctctgttag cacagaatcg
     1921 agataattag cagtcttttt gccaccggca atatctacca tagcatgaaa agccttccaa
     1981 ggataggaaa gatcgaatcc ttcttcatgg gtccatgcat c
//
LOCUS       DATIQF010000649         2246 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_162354,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000649 DATIQF010000000
VERSION     DATIQF010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162354"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..253
                     /locus_tag="VLL95_11000"
     CDS             <1..253
                     /locus_tag="VLL95_11000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39432.1"
                     /translation="LVIAWRTRRIMSELCHNLAVSVWIAANSYWMISEFLGFDEHPWF
                     GDYTYKHIAVIPFVMGILALLFYYVYWRPRHHRSEMETM"
     gene            complement(274..>2246)
                     /locus_tag="VLL95_11005"
     CDS             complement(274..>2246)
                     /locus_tag="VLL95_11005"
                     /inference="COORDINATES: protein motif:HMM:NF025253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tail fiber domain-containing protein"
                     /protein_id="HSR39433.1"
                     /translation="PLSNFVAGMLVYNTATAGTSPNNVIPGFYFCDGGKWVSVGGGTA
                     AGAWLTSGNSGTGVNDFIGTTDNQSLVFKVNNIKSGMIDVATNNVFFGRGSGGGTGGG
                     SAGFGWLALANASGNGNGAFGYQALKGNTTGGSNTGVGSFALFTNDVGSFNVAVGYNA
                     LKQNIGTGNTAIGSNALSTATASTSAVAIGSGAMINATGGSVNVGIGVNALKTNTTGS
                     SNIAAGQNALASNTTGGQNIAIGDSALGLSATNSGQVAVGWKSLAANTSGQNNTAMGH
                     QSLQANSTGTRNTALGFQALNLNSTGSNNTAIGNFALIGNQTGAQNTAIGSQTLTTNV
                     DSFNTAVGYAALNQNTTGRVNTAVGWNAMANNTDGYFNTSVGASSLRFNTSGFYNVAL
                     GQNALRANATGSYNTALGQSALLNNNGDANTAVGWAALAANTSGVDNEALGYQALNAN
                     TTGSENLAMGYQSMAANTAGSQNVAVGNYTLQNNLSGSNNTAVGIGAGVGLTGGDNNT
                     MIGKDAQVPNASGSNQIRIGNSSITYAGVQVAWTITSDSRYKSGIENSELGLDFINTL
                     RPVSYVRKNDQQQKEEFGFIAQEVEDALKQAGVDNTGIITKDDGGLYSMRYNDLLAPM
                     VKAIQEQQQQIKLLQQEIASLKKKAKKGHRHS"
BASE COUNT          423 a          589 c          613 g          621 t
ORIGIN      
        1 attggtgata gcctggcgta cccgccgcat tatgagcgaa ctgtgccaca acctggctgt
       61 gagcgtttgg attgcggcca acagctattg gatgatcagc gagtttctcg gtttcgacga
      121 gcatccctgg tttggcgatt atacctacaa gcatattgcc gtcattccct ttgtaatggg
      181 catactggcg ctgctttttt actatgtgta ctggcggcca aggcatcatc gcagtgagat
      241 ggaaacgatg tgagcctgca ggctcggcgc ttttcagcta tgtcgatgtc cttttttcgc
      301 tttcttctta aggctggcaa tttcctgttg caatagtttg atctgttgct gttgctcctg
      361 tatggctttt accataggcg ccagcaagtc gttgtagcgc atgctgtaca ggcctccatc
      421 atctttggtg atgatgcctg tgttatcaac gcctgcctgt tttaacgcat cttccacttc
      481 ctgggcaatg aatccgaatt cctctttctg ttgctggtca tttttgcgca catacgatac
      541 aggccgcagg gtattgatga agtcaagacc gagttcgctg ttctcgatgc ctgatttgta
      601 gcgactgtcg ctggtgatgg tccatgccac ctgtacgccg gcgtaggtga tgctggagtt
      661 gccgatgcgt atttggttgc tgccgctggc gttgggcacc tgtgcatcct ttccaatcat
      721 tgtattgttg tcgccaccgg tgaggcccac accagctcca atgcccacag ccgtgttgtt
      781 gcttcccgaa aggttgtttt ggagggtgta gtttcccacc gctacattct ggctgccagc
      841 agtgttggct gccatcgatt ggtagcccat ggccaggttt tcactgcccg ttgtgttggc
      901 gttcaaggcc tggtaaccca atgcttcatt gtccaccccg cttgtattgg cggccaatgc
      961 tgcccagccc acagcggtgt tggcatcacc attgttattc agcagtgccg attgccccag
     1021 cgctgtattg tatgatcccg tggcatttgc cctcaatgcg ttttgtccta aggctacatt
     1081 gtagaaaccc gaggtgttga agcgtaacga agaggcgcct acggaagtgt tgaaatagcc
     1141 gtcggtattg tttgccatgg cgttccaacc cactgcggta ttcaccctgc ccgtggtgtt
     1201 ttggttcagt gcggcatagc caacggcggt gttgaagcta tcgacattgg tggtaagtgt
     1261 ttgtgatccg atggcggtgt tttgggcacc ggtctggttg cctatcaatg caaagttgcc
     1321 aatggcagta ttgttgctgc cagtgctgtt caggttcagc gcctggaagc ccaaagcggt
     1381 attcctggtg ccggtgctat tggcctgtaa tgactgatgg cccatggccg tgttgttttg
     1441 tccactcgtg ttcgcggcca gcgatttcca accgacggcc acctgcccgc tgttggtggc
     1501 actgagccca agggcactgt cgccaatggc aatgttctga ccaccggtag tgttactggc
     1561 caatgcgttt tggcctgctg caatgttgct gctgcctgtt gtgtttgttt ttaatgcatt
     1621 gacccctatg cccacattaa ccgatccgcc ggtagcattg atcatggcgc cgctgccgat
     1681 ggcaactgca ctggtggatg cagtggccgt gcttaaagcg ttggagccaa tagcggtgtt
     1741 gcctgtacca atgttctgct tgagcgcatt gtaacccact gccacattga aagagccgac
     1801 atcgttggta aagagtgcaa aagatccaac accagtattg gagcccccgg tggtatttcc
     1861 cttgagtgcc tggtagccaa aggcgccgtt tccattgcca gaggcattcg ctaaggccag
     1921 ccagccaaat ccggcgctgc cgccacccgt gccaccaccg ctgccgcgac cgaaaaacac
     1981 gttgttggtg gccacatcaa tcatgcccga tttaatattg ttcactttaa aaacgagtga
     2041 ttggttgtcg gtggtaccta tgaaatcatt cacgccagtg cctgaattgc cactggtgag
     2101 ccaggctcct gcggcagtgc ctccgcccac acttacccat ttgccgccat cgcagaaata
     2161 aaaaccggga attacgttgt ttggcgaagt accagcggtg gcggtgttgt acaccagcat
     2221 gccggctaca aaattggaga gggggg
//
LOCUS       DATIQF010000650         2478 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_253460,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000650 DATIQF010000000
VERSION     DATIQF010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253460"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VLL95_11010"
     CDS             <1..240
                     /locus_tag="VLL95_11010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39434.1"
                     /translation="IEPFYVGEVSFHSGWVFHRAGANTTNQMRKVMTVIYMDKDMVLK
                     QPENKNQVNDWNTWCPGAVIGEVINTPLNPVIYQN"
     gene            245..1078
                     /locus_tag="VLL95_11015"
     CDS             245..1078
                     /locus_tag="VLL95_11015"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HSR39435.1"
                     /translation="MKIKYCCTYWGSENEAADSFVDKVLSAGYEGIEIYLPSDRPSFI
                     DAFLAELEDIQEKNPGFLFIAQQLTAPDNDTVEDYIRRLQKSLRELAAFRPHFINSHT
                     GRDYFSFDDNCRVLEAAMTISHQTGVRILHETHRGRFSFHAASLIPYLKTFPVLELVG
                     DFSHFCTVSESMLHDQEEILQQIIPHVSHLHARVGHEQAPQVSDPFAPEWQAHLQRFE
                     DWWQQVIQHKQNSGWPQFSITTEFGPAPYMPAVPFTRQPLGNQWQINVNMMQHLRKRF
                     H"
     gene            1079..>2478
                     /locus_tag="VLL95_11020"
     CDS             1079..>2478
                     /locus_tag="VLL95_11020"
                     /inference="COORDINATES: protein motif:HMM:NF019556.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-L-arabinofuranosidase domain-containing
                     protein"
                     /protein_id="HSR39436.1"
                     /translation="MKRMKGKKRNSHWRLVLCCAMTAPCLLPAQSPEATAFRKVAPLP
                     AKLQMLPLNEVKPAGWLQQELQKNLAGFTGHLDSLAPDLILQDDIYGKDRLTNRVKNK
                     NLGAVSDAGDWQAQFLWWNSETQSNWLDGFVRSAVLLGDKAALQKAERIINHLLATQD
                     ADGYIGIYDKELRYRFDNENGELWAKATLYRVLLGWYEYIKDKRILAAVEKAVDNVMQ
                     AWPIYQSHSFYSVNPNVGGITHGLAFTDVLEHLYSITQQPRYMDYCLFMYQDFSSQVL
                     NEDAQFSKLLDTQLPLKGHGVHTYEHLRSVVAAYYASGNPALKSALDNFLVKIEAATT
                     PSGAPIGDEFVGGRAGNAATGYEYCSLHELMAGWTSLLAKSVGSRYADKAERLFFNAA
                     LGNTHPTESAICYLKQDNAFMLTGGNNGDTTDKHQTRYRYSPVHKEAAVCCVPNAGRI
                     VPYYVQSMWMKDEAGLT"
BASE COUNT          611 a          621 c          684 g          562 t
ORIGIN      
        1 atagaacctt tttatgtggg tgaagtgagt tttcacagcg gctgggtgtt tcaccgggcc
       61 ggcgccaaca ccaccaacca gatgcgcaaa gtgatgaccg tgatctacat ggataaggac
      121 atggtgctga aacaaccgga aaacaaaaac caggtgaacg attggaatac ctggtgcccg
      181 ggcgctgtca ttggtgaagt gatcaatacg cctctcaatc ctgtcatcta tcaaaactga
      241 tgctttgaaa atcaaatact gttgcaccta ctggggttct gaaaacgaag cggctgatag
      301 ctttgtagac aaagtgttgt cggcaggata cgagggcatc gagatatacc tgccatccga
      361 caggccttcg ttcattgatg ccttcctggc cgaactggaa gacatacagg agaagaaccc
      421 gggcttcctt ttcattgccc agcaactcac agcgccggat aatgatacgg tggaggatta
      481 catccgccgc ctgcaaaaaa gtttgcggga gctggcggct tttcggccgc atttcatcaa
      541 ctcgcatacc ggcagggatt atttttcttt tgatgacaat tgccgggtgc tggaagcggc
      601 catgaccatc agccaccaga caggggtgcg cattttgcac gaaacccacc gcggacggtt
      661 ttcgtttcat gcggcttcct taatcccgta tttgaaaacc tttcctgtac tggagctggt
      721 gggtgatttt tcgcatttct gtaccgtgtc ggaaagcatg ttgcacgacc aggaggagat
      781 cttgcaacag atcattccgc atgtatcgca cctgcatgcc cgggtaggcc atgagcaagc
      841 cccgcaggta agcgatccgt ttgccccgga gtggcaggcg catttgcaac gctttgaaga
      901 ctggtggcag caggtcattc agcacaagca aaacagtggc tggccgcaat tttcgatcac
      961 caccgagttt ggcccggcgc cgtacatgcc ggcagtgcct tttacccggc agccattggg
     1021 caaccagtgg cagatcaatg tgaacatgat gcagcacctc cgaaaaagat tccattaaat
     1081 gaagcgtatg aaagggaaga agagaaacag ccactggcgc ctggtgctgt gctgcgccat
     1141 gaccgcgcct tgcctgctgc ctgcgcaaag cccggaagcc actgcgttcc ggaaagtggc
     1201 gccgctgccc gccaaactgc aaatgcttcc gctgaacgaa gtgaaaccgg ctggttggtt
     1261 gcaacaggaa ttgcagaaaa acctggctgg ctttaccggg catttagaca gcctggcacc
     1321 tgatttgatt ttgcaggatg acatttatgg caaagaccgc ctgaccaacc gggtgaaaaa
     1381 caaaaacctc ggggcggtgt ctgatgccgg cgactggcag gcacaattcc tgtggtggaa
     1441 tagcgaaacg caaagcaact ggctggatgg ctttgtgcgc agcgctgtat tgttgggcga
     1501 taaagcggca ctgcaaaaag cagaacgcat catcaatcat ttactggcca ctcaggatgc
     1561 tgatggatac attggtattt acgacaagga gctgcgctac cgttttgaca atgagaacgg
     1621 agagctgtgg gccaaagcca ctttgtaccg ggtattgctg ggatggtacg agtatatcaa
     1681 agacaaacgc atactggcgg ccgtggagaa agcggtggac aatgtgatgc aggcctggcc
     1741 catttaccag tcgcattctt tttattccgt caatcccaat gtaggaggca ttacccacgg
     1801 cctggccttt accgatgtgc tggaacattt gtacagcatc acgcagcaac cacgctacat
     1861 ggattactgc ttgtttatgt accaggattt ttcgagccag gtgttgaatg aagatgccca
     1921 gttttcaaag ttgctggata cacaactgcc gttgaaagga catggcgtac atacctacga
     1981 gcacctgcgt tcggtggtgg cggcttacta cgcatcgggc aacccggcgt tgaaaagtgc
     2041 attggataat ttcctggtca agatcgaggc agctaccact ccatccggtg ccccgatagg
     2101 cgatgagttt gtgggtggcc gggcaggcaa tgcggccacc ggctatgaat attgttcgct
     2161 gcatgagttg atggcaggct ggacaagctt gctggctaaa tcggtcggca gccggtatgc
     2221 cgacaaggcc gagcgtttgt tttttaatgc agccctgggc aatacgcatc ctactgaaag
     2281 tgccatttgc tatttgaaac aggacaatgc ttttatgctc actggtggca acaacggcga
     2341 taccaccgat aagcaccaaa cccggtatcg ctattcgccg gtgcacaaag aagccgctgt
     2401 gtgttgcgtg cccaacgccg gccgcatagt gccttactac gttcaaagca tgtggatgaa
     2461 agacgaagcc gggttgac
//
LOCUS       DATIQF010000651         5465 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_86358, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000651 DATIQF010000000
VERSION     DATIQF010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5465)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5465)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5465
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86358"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..413
                     /locus_tag="VLL95_11025"
     CDS             <1..413
                     /locus_tag="VLL95_11025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39437.1"
                     /translation="VWTQLSINEPRYSNREEVRQKQIEVGKDTANKPIYKTVTATLKI
                     TTATYDAYGTLELRIVDYANKKNIDRMSWSDKYASSQSWATYTGEAGALSNADWELIH
                     AKQNNRPDQFYAEDRLLEKIYPNLLRYVRNQLNN"
     gene            complement(441..1370)
                     /locus_tag="VLL95_11030"
     CDS             complement(441..1370)
                     /locus_tag="VLL95_11030"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HSR39438.1"
                     /translation="MSLIVVGTMAYDALETPFGKVDKIVGGSATYAAYAASYFVKPVQ
                     QISIVGNDFEQSILDDLHHRGVMTDGVELVNDKPSFFWSGRYHMDMNTRDTLVTDLNV
                     LADFNPQVPDAYQGAEFLMLGNLMPKLQKQVIDQLTTRPKLIVMDTMNFWMDTAWDDL
                     MENLKLVDVLLVNDSEARQLTNEYSLVKAARKILDMGPKYLIIKKGEHGAMLFYDGHV
                     FYAPALPLEEVFDPTGAGDTFAGGFIGHLAKTGDISFDNMKTAIIVGSAMASFCVEKF
                     GPQRMQELTGTEIATRIQQFVNLVQFDIELVNG"
     gene            1752..2888
                     /locus_tag="VLL95_11035"
     CDS             1752..2888
                     /locus_tag="VLL95_11035"
                     /inference="COORDINATES: protein motif:HMM:NF025019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR39439.1"
                     /translation="MNAERTLMNVLQQQLFQGKTILLLGARQVGKTSLLKSLLAQLDA
                     PSVWLNADENDIRQALDQADTSTQLLQLAGQARIVVIDEAQQIQNIGRKLKLLYDTRP
                     DLQVIATGSSAFELQNKANEPLTGRKREYQLFPFSYAELVNHFGLLPEKRLLHTRLIY
                     GSYPEVVNNPGKEKEVLTELANSYLYKDLLHFEGIQKPVLLQKILQALAFQVGSEVKY
                     QELAQTVGGVDPATVEKYIDLLEKAFVIYRLPALSRNLRNEIKKGKKIYFLDNGIRNV
                     LISNFSPIDLRQDKGALWENYLLSERKKRNAYAGHTPNCYFWRTHDQAEIDYIEEYDG
                     TLHTYECKWKASRRKSRIPASFQEAYPQHTYNILDESNYESFLM"
     gene            3028..3618
                     /locus_tag="VLL95_11040"
     CDS             3028..3618
                     /locus_tag="VLL95_11040"
                     /inference="COORDINATES: protein motif:HMM:NF036525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSR39440.1"
                     /translation="MPRKKLTTPINRKEQILYQAASLFKAKGFNATTMRQLAEHLGME
                     AASIYNHISSKEELLREICFNVANEFNAHLLQLESDESCPARKMEAIIRFHIHMLLTR
                     HDDVYVSNRDWKHLKDPWLTNFLNQRRQYENRLATIVQQGIDQKQFRTVHPHVAVLGM
                     LSAVRSIEYWHRSKRKISSKEVTEDLVTLLLKGLEE"
     gene            3736..4812
                     /gene="paaE"
                     /locus_tag="VLL95_11045"
     CDS             3736..4812
                     /gene="paaE"
                     /locus_tag="VLL95_11045"
                     /EC_number="1.14.13.149"
                     /inference="COORDINATES: protein motif:HMM:TIGR02160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaE"
                     /protein_id="HSR39441.1"
                     /translation="MATHFYKLRVRKVNQETSQCVSVSFEVPAELEQAFAYRQGQYLT
                     LRTHINGQEVRRNYSLCSSPLDNEWKVAIKKVDGGLFSTWANTELKAGMELEVMPPIG
                     KFFTPLEPQQQKNYLAIAAGSGITPVLSIISTTLRTEPGSRFTLIYGNRNKGSIIFKE
                     ELEALKDKFIDRFRLIHILSLERTDAEILHGRITGEKMETLAAQLIDLSRVDECFLCG
                     PEQMILEARQSLLTAGLSKEKIHVELFTSSASHKPIHRNDASESHKQPMAAITVKIDG
                     IESSFALEYMGNSILDAALLQGADLPYACKGGVCCTCKAKLLEGKVDMDVVYGLEPDE
                     IAAGYILTCQSHPRTPVVKVDYDI"
     gene            4968..>5465
                     /locus_tag="VLL95_11050"
     CDS             4968..>5465
                     /locus_tag="VLL95_11050"
                     /inference="COORDINATES: protein motif:HMM:NF012803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HSR39442.1"
                     /translation="MKKAILSTLPLLLFAATVFAQQSTKPKTPKAPVQEEKKEIIIEK
                     KEGGKNEKMTIVIDDGNVTINGKPADQYKGDGRIIIDDDIVINGNMVRVPGARGGVTV
                     RKAEPRAFLGVSTEKDEKGARVSEVIEESAAQKAGLQDDDIITSLNGVKVSDSESLLE
                     AVRKCK"
BASE COUNT         1479 a         1458 c         1359 g         1169 t
ORIGIN      
        1 cggtgtggac acagctgagc atcaatgaac cccgctacag caaccgcgaa gaagtgaggc
       61 aaaagcaaat tgaagtaggc aaggacactg ccaacaaacc gatctacaaa acggttaccg
      121 ctaccctgaa gatcacaacc gcaacctatg atgcgtatgg cacgctggaa ctgcgcatcg
      181 tcgactatgc caacaagaaa aatattgacc gcatgtcgtg gagcgataaa tacgccagct
      241 ctcaaagctg ggctacctat actggggagg ccggcgcact cagcaatgcc gattgggagt
      301 tgatccatgc aaaacaaaac aaccggcccg accaatttta tgccgaagac cggttgctcg
      361 aaaagatcta tcccaatttg ttgcggtatg taaggaatca actgaataat tgagccgcca
      421 gggtgctgcc ctggtgcgca ttatccattt accagttcaa tatcaaactg caccaggttc
      481 acaaactgct gaatgcgggt cgctatttcc gtgccagtca gttcctgcat gcgttgcggg
      541 ccaaacttct ccacgcagaa ggaggccatg gccgagccaa caataatggc cgtcttcata
      601 ttatcgaagc tgatgtcgcc cgttttggcc aggtgcccga tgaaacctcc ggcaaatgtg
      661 tcgccggcgc cagtggggtc aaacacttct tccagcggaa gcgccggagc ataaaacaca
      721 tgcccgtcgt aaaacagcat ggcaccgtgt tcacccttct tgatgatcag gtatttggga
      781 cccatgtcca gtattttacg ggctgctttc accaggctgt attcattggt cagctgtcgg
      841 gcttcgctgt cgttcaccag cagcacatcc accagcttca ggttttccat caggtcgtcc
      901 caggcggtgt ccatccaaaa gttcatggtg tccatcacta tcagcttggg gcgggtggtc
      961 agctggtcta tcacctgctt ctgcagcttg ggcatcaggt tgcccagcat cagaaactcg
     1021 gcaccctggt aggcgtcagg cacctgggga ttgaagtcgg ccagcacgtt caggtcggtc
     1081 accagcgtgt cgcgggtgtt catgtccatg tggtagcggc cgctccaaaa gaaggaaggc
     1141 ttgtcattca ccagttctac cccgtcggtc atcacgccgc ggtggtgcag gtcgtccagt
     1201 atgctttgtt caaaatcgtt gcccacaatg ctgatctgct gcacgggctt cacaaaatag
     1261 ctggctgcgt aggccgcata agtggcgctg ccacccacaa tcttgtctac tttaccaaag
     1321 ggcgtttcca gggcgtcgta cgccatagtg cctaccacaa ttaatgacat agaggaaatg
     1381 ttttacggcc gttttctaaa aaggccgtgc aaagaaaacg atttgcggcc gaagagtctc
     1441 aaagttcgca agctcatggg ctgaggaatt ttcaggggct atgggcagct gtgccggcat
     1501 cagcagttgt cctgtccctt ccgcctgcct gccggtaggc agggggttcg ctttgctccg
     1561 tgcaccggcg ctgcggcccg gtgcaccctc ccttcggtcg gccctccagg cacggcagcc
     1621 attcagcagc agggcattaa tcaccccctt tcctcctatt taggccgaat tacccgattt
     1681 caatctgatt tttaggccta attaccagat tagattcgta tttttaggcc taattaccag
     1741 atttcatcat tatgaacgcc gaaagaacac tcatgaatgt gctgcaacag cagctatttc
     1801 agggcaaaac catcctgctg ctgggcgcca ggcaggtggg caaaaccagt ctgctcaaaa
     1861 gcctgctggc ccagttggac gccccatcgg tttggctaaa cgccgatgaa aacgatattc
     1921 ggcaagcact ggatcaggca gatacctcca cgcaattgct gcaactggct gggcaggccc
     1981 gcattgtggt tatcgatgaa gcccagcaaa tacaaaatat cggccggaag ctgaaattgt
     2041 tgtacgatac caggcccgat ttacaggtga tagccacagg ttccagcgcc tttgaattgc
     2101 aaaacaaagc caacgaaccg cttaccgggc gcaaacgcga ataccagcta ttccctttca
     2161 gctacgccga actggtgaac cacttcggcc tgttgcccga aaaacgactg ctgcataccc
     2221 ggctgattta tggcagctac ccggaagtgg tcaacaatcc cgggaaagaa aaagaagtac
     2281 tcaccgagtt ggccaacagt tatctctaca aagacctgct gcactttgag ggcattcaaa
     2341 aaccagtctt gctgcaaaaa atattacagg ccctagcatt ccaggtaggc agcgaagtga
     2401 aataccagga actggcgcaa acggtaggag gcgtggatcc tgccacggta gaaaaataca
     2461 ttgacctgct cgaaaaagct tttgtcatct atcgcctgcc agccctgagc cgcaacctgc
     2521 gaaacgaaat caagaaaggg aaaaaaattt atttcctcga caatggcatt cgcaatgtgc
     2581 tcatcagcaa tttcagccct atcgacctgc gccaggacaa aggggcattg tgggaaaact
     2641 acttgctctc ggaaaggaaa aaaaggaatg cctatgccgg ccacacaccc aactgctatt
     2701 tctggcgcac tcacgaccag gccgaaatag attatataga agaatacgat ggcacgctgc
     2761 atacctatga atgcaaatgg aaagcatcca ggcgcaaatc caggattccc gcttcattcc
     2821 aggaagccta tccgcagcac acatacaaca tactggacga aagcaactat gaaagcttcc
     2881 ttatgtgatt gtaacagacg aattgggtcg tcagcgcctc tgaaattcag cctcattcaa
     2941 aatggcaagg catatctgaa atcaatagca aacacaagtg gccaatcaac taacaagcgt
     3001 tagttttgcg ccgattattt tgttgccatg cctcgaaaaa agctgaccac tcccatcaac
     3061 cgaaaggaac agatactgta ccaggcagcc agccttttca aggccaaagg ttttaatgcc
     3121 accaccatgc gccagctggc cgaacacctc ggcatggaag cggccagtat ttacaaccac
     3181 atcagcagca aggaagagct gctgcgggag atctgcttca acgtggccaa cgaattcaat
     3241 gcccacctgc tgcagctgga gtccgatgaa agctgcccgg cccgcaaaat ggaagccatc
     3301 atccgctttc acattcacat gctgcttacc cggcacgatg atgtatacgt aagcaaccgc
     3361 gactggaagc atctcaagga tccctggctc accaattttc tcaaccagcg gcgtcaatac
     3421 gaaaaccggt tggccaccat cgttcagcaa ggcatcgacc aaaaacagtt tcgcaccgtg
     3481 catccgcatg tggcggtgct gggcatgctc agtgccgtac gcagcattga atactggcac
     3541 cggagcaaaa gaaagatcag cagcaaggaa gtaaccgaag acctggtaac actgttgctg
     3601 aaaggattgg aagaatagtt tcaaagttca caggtttaca agttcacaag ttggaaagaa
     3661 catttgtgcg ctcccccaac tcgtgactat tggaacttgt gaacacgtga acttgtgaac
     3721 tcatgaacgt attatatggc tacccatttc tacaaattac gcgtcaggaa agtgaaccag
     3781 gaaaccagcc agtgcgtatc ggtttcgttt gaagtgcctg ctgaactgga acaggcattt
     3841 gcttatcggc aaggccagta cctcacgctg cgcacccaca tcaacgggca ggaagtgcgg
     3901 cgcaactaca gcctctgcag cagcccgctc gacaatgagt ggaaggtggc catcaaaaaa
     3961 gtagacggcg gcctgttcag tacctgggcc aataccgaac tgaaagcggg catggaactg
     4021 gaagtgatgc ctcccatcgg gaagtttttc actcccctgg agccacaaca acaaaagaac
     4081 tacctggcca ttgctgccgg tagtggcatt acgccggtac tcagcatcat cagcactacg
     4141 ctgcgcactg aacccggcag ccgcttcacg ctcatttatg gcaatcgcaa caagggcagc
     4201 atcattttca aagaggaact ggaagccctg aaagacaaat tcatcgatcg cttccggctc
     4261 atccatatcc tcagcctcga acgcaccgat gccgaaatcc tgcacggacg catcaccggc
     4321 gaaaaaatgg aaacgctggc ggcccaactc atcgatcttt ccagggtgga tgaatgcttt
     4381 ttgtgcggcc ctgaacagat gatcttagag gcccgccaaa gcctgctgac cgccggcttg
     4441 tccaaagaaa aaatccatgt ggagttgttc acctcctccg catcgcacaa gcccattcac
     4501 cgcaacgatg cgagtgaaag tcacaagcag cccatggcgg ccatcacggt gaagatcgat
     4561 ggcattgaat cgtcatttgc cctggagtac atgggcaaca gcatactcga tgcggccctg
     4621 ctgcaaggcg ccgatctgcc ctatgcctgc aaaggcggcg tgtgctgcac ctgcaaagcc
     4681 aaactgctag aaggcaaggt ggacatggat gtggtgtacg gcctggaacc cgatgaaata
     4741 gcggccggct atatcctcac ctgccaaagc cacccgcgga cacccgtggt gaaagtggat
     4801 tacgacatct agccgttttg ggttttttgt ttttggtttt tggtttttgg ttggggaggg
     4861 gctccttcct atttgcgtcc cttcgtgtta taattttcta aaatctccga agtgtttcgt
     4921 agaataaaaa tcctgcctat atttgatcta cgaaaacatt catagatatg aaaaaggcaa
     4981 tactcagcac actccccttg ttgctttttg cagcaacagt ctttgcccag caaagcacca
     5041 aaccaaaaac accaaaagct cctgttcaag aagaaaagaa ggagatcatc attgagaaaa
     5101 aggaaggtgg caagaatgag aaaatgacca ttgtaattga tgatggcaac gtgaccatca
     5161 atggcaaacc cgctgatcaa tacaaaggcg atggccgcat catcattgat gacgatatcg
     5221 tgatcaatgg caatatggtg cgtgtgcccg gtgcccgtgg aggtgttacg gtgcgcaagg
     5281 cagaaccgag ggctttcctc ggcgtgtcta ccgaaaagga tgaaaaaggg gcacgagtga
     5341 gtgaagtgat tgaagaaagt gcagcgcaaa aagccggcct gcaggatgat gacatcatca
     5401 ccagtttaaa cggcgtaaaa gtgagcgaca gcgaaagcct gctggaagcg gtgcgcaaat
     5461 gcaag
//
LOCUS       DATIQF010000652         2778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_223336,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000652 DATIQF010000000
VERSION     DATIQF010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2778
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223336"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..744)
                     /locus_tag="VLL95_11055"
     CDS             complement(<1..744)
                     /locus_tag="VLL95_11055"
                     /EC_number="3.2.2.4"
                     /inference="COORDINATES: protein motif:HMM:NF005500.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008714 - AMP nucleosidase activity
                     [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA];
                     GO_process: GO:0044209 - AMP salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AMP nucleosidase"
                     /protein_id="HSR39443.1"
                     /translation="MKTKEEIVNNWLPRYTGETLKNFGEYILLTNFSNYVELFAKWNK
                     VPIIGKDRPMQCATHDNITIINFGMGSPGAATIMDLLTAINPKAVLFLGKCGGLKKRN
                     KIGDLILPIAAIRGEGTSNDYFPPEVPALPAFALQKAVSTTIRDHKVDYWTGTCYTTN
                     RRVWEHDEEFKAYLQKIRAYAIDMETATIFTVGFYNKIPTGALLLVSDSPMVPEGVKT
                     EASDKKVTSKFVETHLKIGIGSLQQLINDG"
     gene            806..1252
                     /locus_tag="VLL95_11060"
     CDS             806..1252
                     /locus_tag="VLL95_11060"
                     /inference="COORDINATES: protein motif:HMM:NF024976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction enzyme HsdR N-terminal
                     domain-containing protein"
                     /protein_id="HSR39444.1"
                     /translation="MLNVNFPEPSFRIRRQEGAEEIFDALRKKWIRLTPEEWVRQNLV
                     AWLQAEVKIPAAFIAIEKTLQIGDKTRRFDLLAYNQQHQPHLLVECKAMDVPLSEKVL
                     QQALSMFSVVPASFVLISNGQQTMVWYASGGRYEALEALPSFENWQ"
     gene            complement(1306..2724)
                     /locus_tag="VLL95_11065"
     CDS             complement(1306..2724)
                     /locus_tag="VLL95_11065"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HSR39445.1"
                     /translation="MSSEYSFFQSVEKRFDKAAKFTKWDPGILEKIKACNSVYRMRFP
                     VKMDDGHIEVIEAYRVQHSHHKSPCKGGIRFSMEVNQDEVMALAALMTYKCAIVNVPF
                     GGGKGGIKVNPHKYSAYELEKITRRYTSELVKKNFIGPGIDVPAPDYGTGEREMAWIV
                     DTYMSLKPGEIDGLGCVTGKPITQGGVRGRKEATGLGVFYGIREVFNMPEVVNKVGLT
                     TGLEGKTVVVQGLGNVGYHSVKFFREKGKSKVIAIAEHDGAIYNPDGLNEEEVFQHKR
                     KTGGVLNFPGATNIPNSADALELECDILIPAALENVINGSNADRIKAKVIGEAANGPC
                     TPEADEVFIKKGIVCVPDMYLNAGGVTVSYFEWLKNLSHVRYGRMEKRFQENMNNRIL
                     HQMEELTGKTVNSEERDAIVIGADEIDLVHSGLEETMVEATREIIDCWHKNPEIPDMR
                     TASYVVAINKVATSYAELGIFP"
BASE COUNT          611 a          676 c          710 g          781 t
ORIGIN      
        1 gccatcattg atcagctgtt ggagcgaccc aatgccaatc ttcagatggg tttccacaaa
       61 cttcgaggtc acttttttgt ccgaagcttc cgtcttcacg ccttccggta ccatgggtga
      121 gtcactcacc agcaacaggg ccccggttgg gatcttgttg tagaaaccaa cggtaaaaat
      181 ggtggccgtt tccatgtcga tggcgtaggc cctgattttc tgcagatagg ctttgaattc
      241 ttcgtcgtgc tcccacaccc ggcggttggt ggtgtagcag gtaccggtcc agtaatccac
      301 tttgtgatcg cggatggtgg tggatacagc tttttgcaaa gcgaaggcgg gtagtgccgg
      361 cacttcagga ggaaagtagt cgttggaggt accctcgccg cggatggctg ctatgggtag
      421 tatgagatcg ccgatcttgt ttcgtttttt gaggccgccg catttgccca ggaacagcac
      481 ggccttaggg ttgatggcag taagcaggtc catgatggtg gcggcacccg ggctgcccat
      541 tccgaaattg ataatggtga tattgtcgtg tgtggcacat tgcatgggtc ggtctttgcc
      601 gatgatcggc actttgttcc acttggcaaa cagctctacg tagttgctga agttggtcag
      661 caaaatatac tctccgaaat ttttaagtgt ttctcctgtg tacctgggaa gccagttgtt
      721 tacgatttct tctttggtct tcatatagtt attccatttg gttcctgtct ggtaaatagg
      781 taaaagtaat caatactttt ggcagatgct gaacgtgaat tttcctgagc cttcatttcg
      841 gatacgccgg caggaggggg ccgaggaaat atttgatgcc ctgcgcaaaa aatggatccg
      901 cctgacaccg gaagagtggg tgcgtcaaaa cctggtagcg tggctgcagg ccgaggtgaa
      961 aataccggcc gctttcattg ccattgaaaa gacattgcag attggcgaca agacccggcg
     1021 cttcgatttg ctggcgtaca atcaacaaca ccagcctcac ctgctggtgg aatgcaaggc
     1081 catggatgta cctctttctg aaaaggtatt gcagcaggcg ttgtcaatgt tcagtgtagt
     1141 cccggcttcc tttgtgctta tttccaatgg ccagcaaacc atggtatggt atgcatcggg
     1201 cggccgctac gaggctttgg aagcattgcc atcttttgaa aactggcaat aaaaaaactg
     1261 ccgaccacaa agccggcagt tttgaaaaca gttctctggt ttccattatg ggaatatacc
     1321 cagttcagcg tagctggtgg ctaccttatt gatagctaca acgtaggaag ctgtacgcat
     1381 atcgggtatt tcaggattct tgtgccagca gtcgatgatt tcacgggtgg cttctaccat
     1441 ggtttcttcg agaccgctgt gaaccaggtc aatttcgtcg gcgccaatta caatggcatc
     1501 acgctcttcg ctgttcacgg ttttgccggt cagttcttcc atctggtgca ggatgcggtt
     1561 gttcatgttt tcctggaagc gcttttccat acgaccgtag cgaacgtggc tcaggttttt
     1621 cagccattcg aaatacgaca cggtaacgcc gccagcgttc aggtacatgt ccggtacaca
     1681 cacaatgcct ttcttgatga acacttcatc ggcttccggc gtgcaagggc cgttcgcggc
     1741 ttcgccaatc actttcgctt tgatgcgatc agcgtttgac ccgttgatca cattttcaag
     1801 agcggcagga atgaggatgt cgcattccag ttccagcgca tcggcactgt tgggaatatt
     1861 ggtggcaccg gggaagttca gtacaccacc ggttttgcgc ttgtgctgga atacttcttc
     1921 ttcgttcaat ccgtcgggat tgtaaatggc tccgtcgtgc tcagcaatgg caatcacttt
     1981 tgatttgcct ttttcgcgga agaatttgac actgtggtag cctacgtttc ccaggccttg
     2041 caccaccact gtcttacctt caaggccggt agtgaggccc actttgttta ccacttcggg
     2101 catgttgaat acttcgcgga taccgtagaa tacaccaagg ccagtggctt ctttacgacc
     2161 acgtacaccg ccttgagtga tgggtttacc cgtaacacag cccaggccat caatttcgcc
     2221 tggtttcagc gacatgtagg tgtcaacaat ccacgccatt tctctttcac cagttccgta
     2281 gtcgggggct ggtacgtcaa tgccggggcc aatgaaattt ttcttcacca actctgaagt
     2341 gtagcggcgg gtgatttttt ccagctcata agccgaatac ttgtgcgggt ttactttgat
     2401 accgccttta ccaccaccaa agggcacgtt cacgatggca cacttgtagg tcatcaaggc
     2461 agccagcgcc attacctcat cctggttcac ttccatcgaa aagcggatac cgcctttgca
     2521 gggagatttg tgatggctgt gttgtacgcg gtaggcttca attacttcaa tatgaccgtc
     2581 atccatctta acggggaaac gcatcctgta cacagagtta caggctttga ttttctcaag
     2641 aatacctggg tcccatttcg tgaatttggc ggctttgtca aatctctttt ctacactttg
     2701 aaaaaaactg tactcagagg acataaaaag tgttttttgt ttacaatcgt tataatatgg
     2761 cagtgctccg aagagctg
//
LOCUS       DATIQF010000653         1646 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_192859,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000653 DATIQF010000000
VERSION     DATIQF010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192859"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..311)
                     /locus_tag="VLL95_11070"
     CDS             complement(<1..311)
                     /locus_tag="VLL95_11070"
                     /inference="COORDINATES: protein motif:HMM:NF042861.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin Xre-like helix-turn-helix
                     domain-containing protein"
                     /protein_id="HSR39446.1"
                     /translation="MKKKPIKYAAPKSTSLGQILQEPEIAYEVDTSRFSCQGFADLSS
                     TLGFSQAEWASILHISDRTLQRYLKEDRRRRLLVPPPPPTAVGCRHHRRTPRVVGGRQ
                     LR"
     gene            409..1236
                     /locus_tag="VLL95_11075"
     CDS             409..1236
                     /locus_tag="VLL95_11075"
                     /inference="COORDINATES: protein motif:HMM:NF006133.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR39447.1"
                     /translation="MPFQNKTVFITGASRGIGKAIALKLAESGANIVVASKSITEDPR
                     LGGTIYSAAEEIEKAGGKALPIQLDIRDEAASKAAMEQAAAHFGGIDILINNASAINL
                     LPTEKTEPKRYDLMHNINVRGTFFLCQAAIPFLKKSSNAHILNLSPPINMAAKWFAGH
                     LAYTMSKYNMSMIAYGLSAELKPYRVAANTLWPRTTIATAAVNNLLGGEMLMKMSRTP
                     QIVADAAWYILQQPSEACTGNFFIDEEVLIKHGITDLSQYAYVPGNTSFYTDLFMDA"
     gene            1264..>1646
                     /locus_tag="VLL95_11080"
     CDS             1264..>1646
                     /locus_tag="VLL95_11080"
                     /inference="COORDINATES: protein motif:HMM:NF017754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR39448.1"
                     /translation="MQHTNAQNPLLQLAHDYVMQTGESLFLTGKAGTGKTTFLRRLKE
                     ECPKQMAVLAPTGVAAINAGGVTIHSFFQLPFAPFIPVRGSTGHGEEAVGEHALISKL
                     RYSREKRELIQGLDLLVIDEVSMVRA"
BASE COUNT          432 a          422 c          414 g          378 t
ORIGIN      
        1 cgaagctgac ggccaccgac cacacgagga gtacggcgat gatgccggca gcccacggcc
       61 gtaggcgggg gcggaggtac gagtagccga cgccggcgat cctctttcag gtagcgttgt
      121 aaagtcctgt cactaatgtg caagatggaa gcccactctg cctggctgaa ccccagtgta
      181 ctgctaaggt ctgcaaaacc ctggcaggaa aaccggcttg tatccacttc ataagctatt
      241 tcgggctcct gcaatatttg gcccagcgaa gttgatttgg gagcagcata cttaatgggc
      301 ttctttttca ttttacgcca tttgtcgcac taatgtacga caaatttcca taaatttaca
      361 tttccctctc tttcagaaac attaatttgg gaaactaaaa cgatccttat gccattccaa
      421 aacaagacag tctttattac gggggcaagc cgcggcattg gcaaagccat tgcgctgaag
      481 ttggccgaaa gtggcgccaa tattgtggtg gcctccaaaa gcatcacgga agatccgcgt
      541 ttaggcggca ccatttacag cgctgccgag gaaattgaaa aagctggcgg caaagccctg
      601 cccattcaac tggacatccg tgacgaagca gccagtaagg ccgccatgga gcaggctgct
      661 gcacactttg gcggcatcga tatactgatc aacaatgcaa gcgccatcaa tttgctgcca
      721 accgaaaaga cagagcccaa gcggtacgac ctcatgcaca acattaatgt aagaggcacc
      781 ttctttcttt gccaggcagc cattccattt ctgaagaaaa gcagtaacgc ccacatcctc
      841 aacctgagtc cgcctatcaa tatggcagcc aagtggttcg caggacacct tgcttatacc
      901 atgagcaaat acaatatgag tatgattgcc tatggactga gtgcagaact taagccgtat
      961 cgggtagcag ccaacacatt gtggccaaga accaccattg ccacggccgc ggtgaacaac
     1021 ctgttgggtg gtgaaatgct catgaaaatg agtcgtacac cgcaaatagt ggcagacgct
     1081 gcgtggtata ttttgcagca accttcagaa gcatgcaccg gtaatttctt catagacgag
     1141 gaagtgctga tcaagcatgg catcactgat ttgagccagt atgcttatgt gccgggcaac
     1201 acttcatttt acaccgatct tttcatggat gcctgattcg cttcttccta taatcacacg
     1261 cacatgcaac acaccaatgc tcagaatccg ctcttacagt tggcacacga ttatgtgatg
     1321 caaacgggcg aatccttgtt tctcacagga aaagccggca ctggcaaaac aaccttcctg
     1381 cgaagactga aggaggaatg tccaaagcag atggccgtgc tggcgcctac gggtgtggcc
     1441 gccatcaatg ctggtggggt taccattcac agtttttttc aattgccttt tgctcccttc
     1501 attcccgttc gcggaagtac aggccacgga gaagaggcag tgggcgagca tgccctcata
     1561 agcaagttgc gttatagcag ggaaaagcgg gagttgatcc agggcctcga cttgctggtg
     1621 attgatgaag tgagcatggt gcgtgc
//
LOCUS       DATIQF010000654         2478 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_147496,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000654 DATIQF010000000
VERSION     DATIQF010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147496"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..375)
                     /locus_tag="VLL95_11085"
     CDS             complement(<1..375)
                     /locus_tag="VLL95_11085"
                     /inference="COORDINATES: protein motif:HMM:NF013715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HSR39449.1"
                     /translation="MSRKQTLLSKLTQKLRQFGPGLITGASDDDPSGIATYSQAGARF
                     GLQFLWTAVATYPLMVAIQEMCARIGLVTDHGLTGIIKQHYPRPLLYLILLVSFPSIT
                     MNIGADIAGMGAVANMLLPSVPA"
     gene            596..1105
                     /locus_tag="VLL95_11090"
     CDS             596..1105
                     /locus_tag="VLL95_11090"
                     /inference="COORDINATES: protein motif:HMM:NF013426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase subunit E"
                     /protein_id="HSR39450.1"
                     /translation="MATITAVAGAEKPKTDPRLKLIAAKIKKENYKPDALIEILHTAQ
                     NVFGYLPAEVLQYITKALKLPPARVYSTVSFYHFFSLKSKGEHNCIVCTGTACYVKGA
                     NAILNELGKAFDIKPGQVTKDNKLGLQVARSIGACGLAPAVVIDNEVQGKVTAEDVVT
                     LVHQKIETV"
     gene            1102..>2478
                     /locus_tag="VLL95_11095"
     CDS             1102..>2478
                     /locus_tag="VLL95_11095"
                     /inference="COORDINATES: protein motif:HMM:NF013662.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase subunit E"
                     /protein_id="HSR39451.1"
                     /translation="MNRHDLKTIVYAEKAKEESSHYKYKVCVCCGASCISSGGEEVMK
                     KLQEEIKIRGIENDVEVIPTGCMGPCNQGPLVKVMPNNSIYQRVDFSSIGKIVKTQLM
                     ENKPLLDQLLFADSREQPFVDSAEDPFFKKQMKIALKDCGDLNPEKIEDYLVHDGYAA
                     LDKVLFEMSPEEVIAEVKQSRMRGRGGAGYPTGLKWETVYKYVSDQKYVICNGDEGDP
                     GAFMDRSVLEGNPHRVLEGMAIAGYAIGASKGYAYIRGEYPLAIKRFELAIKQASKLG
                     LLGANILGSNFSFDVEVRIGAGAFVCGEETALIASIEGKRGTPRPRPPYPAESGLCGK
                     PTLINNVETLAGIAPIIMHGGEWYSDTGTPKSAGTKVFALAGKIKYSGLIEVPMGTTL
                     REIVFDIGGGMQNNTPFKAAQTGGPSGGCIPAEHLDVKMDYESLVNLGSIMGSGGLII
                     MDKSSDMVD"
BASE COUNT          665 a          607 c          674 g          532 t
ORIGIN      
        1 tgccggcact gacggcaaga gcatattagc aacagcgccc attcctgcaa tgtcggcgcc
       61 aatgttcatg gtgatagagg gaaaactcac cagcaaaatg aggtacaaca atggcctcgg
      121 ataatgttgt ttgatgatgc cggtaaggcc atggtcggta accaacccaa tgcgggcaca
      181 catttcctgg atggctacca tcagcgggta agtggcaacc gctgtccaca aaaattgcag
      241 gccaaaccgg gcgcctgcct gcgagtacgt agcaatgcca gatgggtcgt catcgctggc
      301 accagtgatc aaccctgggc caaattgtcg cagcttttgg gtcagtttgg atagcagagt
      361 ttgtttgcgg ctcatggaag ttcgtttcct tatgaaagat aagcgcaaca ggtgcattca
      421 aacatgaccg ccggcatgct acggagttta tgcatccaca ccattgatat tgatcatatt
      481 tcgcccaata aggctgccat agttttgagc tatctcactg aaatcagaag ccgattgtag
      541 gggtgcggaa accatgccac tacagcggct tccgttattc tgatacttat ctaatatggc
      601 taccattacc gctgttgcgg gtgccgaaaa acccaaaaca gatccccgcc tcaagctcat
      661 tgcagcaaaa atcaaaaagg aaaattacaa gcccgacgcg ttgattgaaa ttctgcatac
      721 ggcgcagaat gtatttggct atctgccggc agaggtgttg cagtacatca ccaaagcgct
      781 gaaactgcca ccggcacggg tgtattccac ggtcagcttt taccacttct tttcgctgaa
      841 gtcgaagggc gagcacaact gtattgtgtg caccggtacg gcctgttatg taaaaggcgc
      901 caatgccatt ttgaatgaac tgggcaaagc cttcgacatc aaaccggggc aggtgaccaa
      961 agacaataaa ctgggtttgc aggtagcccg ctctattggc gcctgcggcc tggcaccggc
     1021 ggtggttatc gataatgaag tgcagggtaa agtgactgcc gaagatgtgg taacgcttgt
     1081 tcaccaaaaa atcgaaactg tatgaaccgg cacgacctga agacgatagt gtatgctgaa
     1141 aaagccaaag aagaaagcag tcattacaaa tacaaagtgt gcgtttgctg cggtgccagt
     1201 tgcatctcct ccggtggaga agaagtcatg aaaaaactgc aggaagaaat aaagatccgt
     1261 ggcatcgaaa atgacgtgga agtaataccc accggctgca tggggccttg caaccaggga
     1321 cccttggtaa aagtgatgcc caacaacagc atttaccagc gggttgattt cagcagcatt
     1381 ggcaagattg tgaagacaca actgatggag aacaaaccat tgctcgacca gttgttgttt
     1441 gccgattcaa gagagcagcc ttttgtggac agtgcggagg atccattttt caaaaagcaa
     1501 atgaagatcg ccctgaaaga ctgcggcgat ctcaatcctg aaaaaattga agactacctg
     1561 gtgcatgacg gctacgcagc cctcgacaaa gtgttgtttg aaatgtcgcc cgaagaagtg
     1621 atagcggaag tgaagcagag caggatgcgg ggcaggggcg gcgccggtta tcccacgggg
     1681 ttgaagtggg aaaccgttta caaatacgtc agcgatcaga agtacgtgat atgcaacggc
     1741 gacgaaggtg accccggcgc ttttatggac cgcagtgtgc tggaaggcaa cccgcaccgg
     1801 gtgctggaag gcatggccat tgcgggctac gccatcggcg cctccaaagg atacgcctac
     1861 atccgtggcg aatatccgct ggccatcaaa cgttttgaac tggccatcaa gcaagccagc
     1921 aaactgggcc tgctgggcgc caacattctc ggcagcaatt tttcttttga tgtggaagtg
     1981 cgcattggcg ccggcgcttt tgtttgtggc gaagaaaccg cactcatcgc ttccattgaa
     2041 ggcaaacggg gcacaccacg gcccaggccg ccttacccgg cggagtcggg tttgtgtgga
     2101 aagccaactc tcatcaacaa cgtggaaacg ctggccggca tcgcacccat catcatgcat
     2161 ggcggcgaat ggtacagcga tacgggcaca ccgaaaagtg cgggtaccaa agtgtttgcg
     2221 ctagctggca agatcaaata ctccggcctc attgaagtgc ccatgggtac cacgctgcgt
     2281 gaaattgttt tcgacatcgg cggcggcatg caaaacaaca cgcccttcaa agctgcccaa
     2341 acaggcggtc cttccggtgg ctgtattcct gccgaacacc tcgatgtgaa aatggattac
     2401 gaatcactgg tcaaccttgg atcgatcatg ggttcgggag gactgatcat catggataaa
     2461 agttcggata tggtggat
//
LOCUS       DATIQF010000655         1841 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_208343,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000655 DATIQF010000000
VERSION     DATIQF010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1841
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208343"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            176..823
                     /locus_tag="VLL95_11100"
     CDS             176..823
                     /locus_tag="VLL95_11100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39452.1"
                     /translation="MQKDPAGCYLSKQEDGSVLSLLISDNYFSLTSFNHELRRFNYTW
                     GGPCTVESGTMRIFVEFNTWQAQQGAVGNEVAATLEWTKEGLKFNGTLFHHHDNANGE
                     LAGCWRITARQQNGKMTEMQRGARKTLKIMTGSHFQWVAMNTETGEFFGTGGGKYTFD
                     KGQYTETIEFFSRDSSRVGAKLSFEGRVEGNQWHHAGKSSKGDPIYEIWTREKQL"
     gene            1054..>1841
                     /gene="porV"
                     /locus_tag="VLL95_11105"
     CDS             1054..>1841
                     /gene="porV"
                     /locus_tag="VLL95_11105"
                     /inference="COORDINATES: protein motif:HMM:NF033710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IX secretion system outer membrane channel
                     protein PorV"
                     /protein_id="HSR39453.1"
                     /translation="MRSTLFSLLTIFGLLTTLFADAQQGQSINVVTTAVPFLRIGPDA
                     RAGGMGDVGVATSPDGNSTFWNVSKSAFLQEKGGVSMTYTPWLKDIGVSDVFLAALSG
                     YYKLDDESAITTGLRYFDLGDIQFTDFNGNPLSTGKPTEVGFDVGYARKLSSRWSIGA
                     NLRYINSNLARGYAASSGVVYQAGNTVAGDITGFYDGTDEMGQGWRFGAAFTNLGGKI
                     GYTNNAQEKDYIPANMGLGFSYTAAFDELNKLMFAVDVNKLMVPT"
BASE COUNT          471 a          427 c          463 g          480 t
ORIGIN      
        1 ggtgggcaaa tggcggacgg gtaaatacct tgcgggcagg ttgtatacat agtttccgat
       61 tttgaacagt aaaaccttct ttatgttcat gtcctctttt caatcggtga tgctgggctt
      121 ttcccttgcg tgtgccttgg cgatgcccaa ttatgaaatg tcatctcctg gcgttatgca
      181 aaaggatccg gcaggctgct acctttcaaa gcaggaagat gggtcggtgc tgtcactcct
      241 cataagcgac aattattttt cactgacctc cttcaaccat gaactccgcc gtttcaatta
      301 tacctggggc ggcccctgca ctgttgaatc cggcaccatg cgcatttttg ttgagttcaa
      361 tacctggcag gcgcaacaag gggccgtggg gaatgaagtg gctgccacgc tggaatggac
      421 gaaggagggg ctgaaattca acggtacatt gtttcaccac catgacaacg cgaatggcga
      481 actggccgga tgctggcgca taaccgcccg acagcaaaac gggaaaatga cggaaatgca
      541 gaggggggcc aggaaaaccc tgaaaattat gaccggttct cattttcaat gggtggccat
      601 gaatacggaa accggggagt tttttggcac aggagggggt aaatacactt tcgacaaggg
      661 ccagtacacc gagactattg aattttttag tcgtgacagc agccgggtag gggcgaaact
      721 ttccttcgaa ggaagggtgg aaggcaatca atggcatcat gcaggaaaaa gttcaaaggg
      781 tgaccccatt tatgaaatct ggacccgcga gaagcagtta taaccgcttc attctgaata
      841 aaattgacat taaatagaat atttccacag cggaagcgtt ttagcagcaa ttgccagggc
      901 agttgagaat tgttcatgaa tctccatttt tcctattttc gattcataaa cacttactgc
      961 ctattggtca atctctacac ctaccaaaac tgaaaacgcc gagcattagg aaaaccgcct
     1021 ttttatcggc tcttgttatt taaaaccaga ttcatgagat cgaccctttt cagccttctg
     1081 acaatttttg gattgttgac aaccttgttt gctgacgccc agcaaggtca atcaattaac
     1141 gtagttacaa ccgctgttcc gtttttgcgc ataggtcccg atgcccgtgc cggtggtatg
     1201 ggtgatgtgg gtgtggctac cagtcccgat ggaaattcta ccttctggaa cgtatcaaaa
     1261 tctgctttcc tccaggaaaa agggggcgtg agcatgactt atactccctg gctcaaggat
     1321 atcggggtat ctgatgtttt cctggccgct ctttccggct attacaaact ggatgatgaa
     1381 tcagccatta ccaccggtct ccgttacttc gatctgggcg acatccagtt cactgatttc
     1441 aatggcaacc ccctgagcac cggcaaacca accgaagtgg gctttgatgt gggttatgcc
     1501 cgcaaacttt cttcgaggtg gagcattggt gccaacctcc gttacatcaa ttcaaatctt
     1561 gcccgggggt atgctgcttc aagtggtgtg gtttaccagg caggaaacac cgtagccggc
     1621 gacattaccg gcttctacga cggaaccgat gaaatggggc aagggtggcg ttttggtgct
     1681 gcttttacca acctgggcgg caaaattgga tataccaaca acgcacagga aaaggattac
     1741 atccctgcca acatgggatt gggattttcc tataccgccg catttgatga attgaacaaa
     1801 ctgatgtttg ctgtggatgt aaacaaattg atggtaccta c
//
LOCUS       DATIQF010000656         1640 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_71208, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000656 DATIQF010000000
VERSION     DATIQF010000656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71208"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..269)
                     /locus_tag="VLL95_11110"
     CDS             complement(<1..269)
                     /locus_tag="VLL95_11110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39454.1"
                     /translation="MLRSISVLLFLVIAKQAISQEPVKPIHPTYGPNDTIVVYATVMP
                     DGTLVPTVTLPMVECVGKMPGWMARQNKKMTRLRNAVYVTYPYAR"
     gene            complement(484..>1640)
                     /locus_tag="VLL95_11115"
     CDS             complement(484..>1640)
                     /locus_tag="VLL95_11115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39455.1"
                     /translation="VAIIAGLLTAITQYLRYKDTPKKTFYSKLLWPTAISLAVSLAFS
                     FLVGISYEKKGPGFWIALHAGVFMAVYAIVANAGYIWSGMKGKLRLAGASIAHIGFGM
                     VLLGILISAGNKKTLSINTTGISPLKMQNANDVNNNPMENTTLIKGVATDMGSYNVTY
                     KGDTINPRDRKRYFEIAFLAKDGRDSFRLYPDIIENNKGGEGVTPNPDSKHYLHKDIF
                     AYITFLTDPNAKVKDTTSFRNQTVVIGDTSFYSNGMWTVKQLELNPTDGRFATYKGDT
                     IVAANISVIAKDGRLYQARPAFRLKGNELEMLTDTVMSQSLIFALRKPGDIEKQEVEI
                     GIKESNAILDFITLKVYEFPAINVLWLGVIVTVIGFLMSMLQRFKLMKND"
BASE COUNT          399 a          409 c          376 g          456 t
ORIGIN      
        1 tccctggcat atggataggt tacgtaaaca gcattccgca gcctggtcat tttcttgttc
       61 tgcctggcca tccacccggg cattttgccc acgcattcta ccatcggcaa tgtcacggta
      121 ggaaccagcg tgccatcagg cataacggtg gcataaacca cgatcgtgtc gttggggcca
      181 tatgtaggat gtattggctt taccggttcc tgacttattg cctgcttggc aataaccagg
      241 aacaataaaa ctgatatgga ccgcagcatc ttcatccttt cctaaaatta ggcatcaatt
      301 ggtaagacaa ctgatatttc ataaaggttg cgccgatttg gcaacttcct gaacgcccga
      361 acctgtgctt tatttcattc cttgcccttc aaccaggtat ccaaacaccg tgtgaaagtt
      421 tgaaaaaaca aaccctccgg cactttacag cggcggaggg ttttatatcc tattacttga
      481 aaatcaatcg ttcttcatca gtttgaaccg ttgcagcatg ctcatcagga aaccgataac
      541 ggtaacgatc acgcccaacc aaagcacgtt gatggcaggg aactcatata ctttcaaagt
      601 gatgaaatcg agaatcgcat tgctttcctt gatgccgatc tctacttcct gtttttcaat
      661 gtcgccgggc tttcgcaaag cgaatatcag gctttggctc attacggtat cagtgagcat
      721 ttccagttca ttgcccttca gcctgaatgc aggccttgcc tggtaaagtc ttccgtcttt
      781 ggcaatgaca gaaatattgg cggccactat ggtatcgcct ttgtaagtag caaaccgtcc
      841 atcggtgggg ttcagttcca attgctttac cgtccacata ccattgctgt aaaagctggt
      901 atcgccaatc accaccgttt gattcctgaa actggttgta tccttcacct tggcattggg
      961 atcggtcaaa aaggtgatat aggcaaatat gtctttgtgc aaataatgct ttgaatccgg
     1021 gttgggggtc acgccttctc cgcctttgtt gttttcaatg atatcgggat acaggcggaa
     1081 agagtcgcgg ccatctttgg caaggaaggc tatttcgaaa tatcgctttc tgtcacgtgg
     1141 gttgatggta tctcccttgt aggtcacatt atacgacccc atatccgtgg ccactccttt
     1201 gatgagggtc gtgttttcca tgggattgtt attcacgtcg ttggcgttct gcattttcaa
     1261 cggagaaatc cctgtggtgt tgatgctcag cgttttcttg ttgccggccg aaatgaggat
     1321 gcccagcaac accatgccaa acccgatatg cgctatcgaa gcgcctgcca atcggagttt
     1381 ccctttcatg ccagaccaga tatatcctgc attggcaaca atggcataca ctgccatgaa
     1441 aaccccggca tgcaaggcaa tccaaaaacc cggacctttt ttctcgtagg aaataccgac
     1501 caaaaaactg aatgcaaggc tgactgccag gctgatggcg gttggccaaa gtaacttgct
     1561 gtaaaaagtc ttcttgggtg tgtccttgta gcgcaggtat tgcgtgatgg ccgtcagcaa
     1621 accggcaatg atggccaccc
//
LOCUS       DATIQF010000657         6318 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_25842, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000657 DATIQF010000000
VERSION     DATIQF010000657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6318
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25842"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..678)
                     /locus_tag="VLL95_11120"
     CDS             complement(<1..678)
                     /locus_tag="VLL95_11120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39456.1"
                     /translation="MIIDRISQDVPFYRAYLKNAALCGTAVINNPFWWSADEKFFNNC
                     LATKIDVPVPKTVILPSYEHPTDTGNESFTNLAYPMDWQGIFEYVGFPAYMKPFAGGG
                     WKNVYRLENLDEFYQKHPETEQLVMLLQEEIIFEEYYRCYCIGGKHVRIMPYEPRNPH
                     HLRYVADFSPSPERYKQMEDIVLRINAYLGYDFNTVELALRDGVPYAIDFCNPAPDAD
                     IKSVGQEN"
     gene            complement(974..1912)
                     /gene="queG"
                     /locus_tag="VLL95_11125"
     CDS             complement(974..1912)
                     /gene="queG"
                     /locus_tag="VLL95_11125"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0052693 - epoxyqueuosine reductase
                     activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HSR39457.1"
                     /translation="MNQAAASQIVKRLAVQEGFQYCGIAHAMPLEDDARRLEQWLKQG
                     LHGSMQYMENHFDLRIDPTKLVPGARSVITVLKNYFPETLQPTEAPKVSKYAYGTDYH
                     DVIRKQLNSLLAQLREQFGQIEGRGFVDSAPVLERAWAVKSGLGWVGKNGNVITRQQG
                     SFFFIATLITDLALEADAPFAGDFCGSCTRCIDACPTSAILPNKVVDGSRCISYYTIE
                     LKEKLIPQEMQGRFDNWMFGCDTCQDVCPWNRFSKPHREAAFEPIPAILDFKTGDWLD
                     LTEASFKTIFKHSPLKRSKFEGIRRNLQFLQAGPAD"
     gene            2239..4272
                     /locus_tag="VLL95_11130"
     CDS             2239..4272
                     /locus_tag="VLL95_11130"
                     /inference="COORDINATES: protein motif:HMM:NF013961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase domain-containing protein"
                     /protein_id="HSR39458.1"
                     /translation="MRHFLVPAFLLAMMSCFCAQAQQSAEKFDFKIGKVTAADFMLPA
                     DAADTGAAAFIIGDIGESHFVGNNKGWFSLQFERKVRIKINNVNGVDAADFVIPLYTD
                     GDATEKLSGLKAYSFNLEGSEIVKTELKNDQVFSDKLSKNLVIRKFSVPGAKAGSIID
                     VTYSIESDFLQNLQNWTFQGEYPRYWSEYTVDIPAFFNYVVLSQGYNSFYKTKRSETS
                     EKFRIVVPTEGGTGRAYTVEETANVNYSTWIMKNVKDLKEEPFTSSLNNHISRIDFQL
                     NYIRFEGEPGKSFMASWPEVVKSYNESDNFGLQLYKNNGWLSDELKSVVAGANTPEEK
                     ARKIYCHLRDHYTCTGGGKYLSNGGLKAVQKSKSGNVADINLMMVAMLNNQDIEASPV
                     LLSTRSHGWTHEIYPLMDRFNYVVAEVSIEGKKFYLDATEPGLPFGVLPPQCYNGHAR
                     VMKGQGMPVYFSPDSAIEKKTTTVIVTYTDEKEWVASLGSSLGNFESLNLRSEVKKNG
                     KEPEKEKIRKSIPAELELTDVNIRNIDSTEENVKVECKIKLPVEGEDVIYLNPMFGEA
                     YKENPFSSAERLYPVEMPYAMNELFVANIQLPPGYVVDEMPKSAKVALPDNAGMFEYM
                     IGGEPDHVMLKSRIVLNRANYAAEEYEYLREFFSYVVKKQAETIVLKKKAEGK"
     gene            4269..6173
                     /locus_tag="VLL95_11135"
     CDS             4269..6173
                     /locus_tag="VLL95_11135"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 domain-containing protein"
                     /protein_id="HSR39459.1"
                     /translation="MKTIGNWIVLMLLVLQAQAQQFAVKLIPDSLLKGADVVVRVDEM
                     KLEIADKGKAHFRTRIAYTILNEKADYLSIQQNGYDKFISIDNIDANLYDADGNKIKS
                     LRKSDIKDLSDMGGGTDISDDRIKEYGFYHKTYPYTVEFEVSTTYKGLMFLPTWYALS
                     NERISVEQTSYSVTYPGDAPVQFKAFNYPGEPKRSAQGNNTTLVWEMKNLKALLKEPL
                     APAWHEITPVVFLAMKDFMMDGYTGSNASWEKLGDFVYQLKKGRDVLPYEIQGKVKEM
                     VAGKQTTFEKVDALYKFMQSNTRYISIQLGIGGWQPYDASYVYTKKYGYCKALTNYMA
                     ALLNAVEIPSVYALVKAGSGQLRFMEDFPSSQFNHVILCVPNGNDSIWLECTSQTMPT
                     GYLGDFTNNRPVLMVKETGSRLGRTPDYSIDQNLQLRRIQATVNADGTLTCTANNEYR
                     AMQQDDLHGLINAYPLDKQKEVLQQQFNLGTYSVKSFKYTELSSKLPVIEEKLELEAL
                     NYAQISGKRLMLQPNILSRSNWRLQKDSTRKFDFLFSYPYTDVDSVQIEVGEGYTVEA
                     LPRPQKIENEFGYFETRTELVGSKVLYYRKIQRKAGQFPPAKWESLVKYLDDITRADR
                     QKIVLVKKEA"
BASE COUNT         1741 a         1449 c         1579 g         1549 t
ORIGIN      
        1 attttcctgg cctacgctct tgatgtcagc atccggcgcc gggttgcaga agtcaatggc
       61 ataaggcacg ccatcgcgaa gggccagttc cacggtattg aaatcgtagc cgaggtaggc
      121 attgatgcgg agcactatgt cttccatctg cttgtagcgt tcagggctgg ggctgaaatc
      181 ggcaacatag cgcaaatgat gcgggttgcg gggttcataa ggcatgatgc gaacatgctt
      241 gccgccgatg caatagcagc gatagtattc ctcgaaaatg atctcttcct gcagcaacat
      301 taccaattgc tcggtttccg gatgcttctg gtaaaattca tcgaggtttt ccagcctgta
      361 aacgtttttc caacctccac ctgcaaaggg cttcatgtaa gcagggaagc ctacgtattc
      421 aaaaatgccc tgccaatcca ttggatacgc caggttggta aatgattcat taccggtatc
      481 agtagggtgc tcgtacgatg gcaggatcac ggttttagga accggcacat caatcttggt
      541 ggccaggcag ttgttgaaga acttttcatc agcactccac cagaaagggt tgttgataac
      601 ggcggtgcca caaagcgccg cattcttcag gtatgccctg taaaatggca catcctgtga
      661 aatacggtcg atgatcacgg cgtaatcagt ggcctcgcct tgtgctactt tggcaatgct
      721 taccggctag gcaacgattc ccggaatttg tttgctgttg atgcgttcaa taacaccgta
      781 aggaaaggaa cgctctttgc cgaacagaac accaattttt ttcatacgat tctttttgtt
      841 gtgttgggtg attaggacaa agcctgccgg gtggctctat ttttttgagc tgcaaaggta
      901 tctggcaggc cagccccaat tcaaaacatt tgcttaaagt aaagaaaccc aatcgaaaaa
      961 tcgaaaaacg aaatcaatct gccggaccgg cttgaaggaa ttgaaggtta cgccggattc
     1021 cctcaaattt cgatcgcttc aatggcgaat gtttgaatat cgtcttaaaa gatgcttcgg
     1081 tcaggtccag ccaatcgccg gttttgaagt cgagtatggc gggtatgggc tcgaatgccg
     1141 cctcccggtg cggtttcgaa aaccggttcc agggacacac atcctggcag gtgtcgcagc
     1201 caaacatcca gttgtcgaaa cgtccctgca tttcctgcgg aatgagcttt tctttgagct
     1261 cgatggtgta atagctgatg caacggctgc catctaccac cttgttgggc aggatggcgc
     1321 tggtggggca ggcatcaata caacgggtgc aactgccaca gaagtcgccg gcaaaaggtg
     1381 cgtctgcctc caatgccagg tcggtaatga gcgtggcaat gaagaaaaag gatccctgct
     1441 gtcgggtaat gacattcccg tttttgccca cccagcccag tccgctcttc acagcccagg
     1501 ctctctccag cacaggcgca ctgtcaacaa aaccccgtcc ctcaatttgg ccaaattgtt
     1561 cccgcaattg tgccagcagg ctgttcagtt gtttcctgat cacgtcatga taatcggttc
     1621 cgtaggcata cttactcact ttgggcgctt ccgttggctg cagcgtttcg gggaaataat
     1681 ttttaagcac cgtgatcacc gatcgggcgc cgggcaccag tttggtggga tcaatccgca
     1741 ggtcgaaatg attctccatg tactgcatgg atccatgcaa gccttgtttg agccattgtt
     1801 cgaggcgccg ggcatcatcc tccaaaggca tggcatgggc aatgccgcaa tactggaaac
     1861 cttcctgtac tgccagtcgt ttgacaattt gtgatgctgc tgcctggttc atggcccgat
     1921 ttgctgcaaa gcaactttat ttttcaatgc gatctcaagg caagcaattc ttagtcatcg
     1981 ccgttgattc ccatccttca tcaatggatg acttatctca tccttttttt tgacaaatgt
     2041 caaattttga aatgcgtttt gattgtcgtc cggcaacctt gttaaacgca gttgtgttgt
     2101 ggataaatag ctcaaatggg caaggggcgc aggtttcagg ttgtcgataa ggcttttttc
     2161 aaaataaaaa ttttgttcat aggagtttgt gctattatta ttgtggtagg atatttacta
     2221 ctaactgaca ctgtatttat gagacatttt cttgtgccag cctttttgct ggcaatgatg
     2281 tcctgctttt gtgcgcaggc gcagcaatcc gctgaaaaat ttgatttcaa aattgggaaa
     2341 gtaaccgccg ccgattttat gctgccggct gacgcggcag acaccggtgc ggccgccttc
     2401 atcattggcg atattggaga atcgcatttc gtcggcaaca ataaggggtg gttttccctg
     2461 cagttcgaaa gaaaggtcag gataaagatc aataacgtga atggggtgga tgcggccgat
     2521 tttgtaatcc cgctttatac tgatggcgat gcaacagaaa aactttcagg tctgaaagca
     2581 tattcattca acctggaagg cagtgaaata gtgaaaacgg aactgaagaa cgaccaggtg
     2641 ttcagcgaca agctgagcaa gaacctggtg attcgcaagt tttcagtacc gggtgccaaa
     2701 gccggatcca tcattgatgt tacttattcc atcgaaagcg attttctcca gaatctccag
     2761 aattggacct tccagggtga atatccccgg tattggagtg aatacacagt ggacattcct
     2821 gcctttttca attatgtggt gttgtcgcag gggtacaaca gtttttacaa aacaaaaaga
     2881 agcgaaacca gcgagaaatt cagaatagtg gtgcctacgg aaggagggac aggaagagcc
     2941 tataccgtgg aagaaacggc caacgtgaat tactctacct ggatcatgaa aaacgtgaag
     3001 gacctgaagg aggaaccttt cacctcttca ctgaacaacc acatttccag gatcgatttt
     3061 cagttgaatt atatccggtt tgaaggcgag cccggcaagt cgttcatggc ttcgtggccc
     3121 gaagtggtaa aatcatacaa tgaatcagac aacttcggac ttcaattgta taaaaacaac
     3181 ggttggttga gcgatgaact gaaatcagta gtagcaggtg ccaatacccc ggaagaaaag
     3241 gccaggaaaa tttactgcca ccttcgcgat cattacacct gcaccggagg aggcaaatac
     3301 ctgagcaatg gaggccttaa agctgtacag aaatcaaaaa gcggcaatgt ggccgatatc
     3361 aacctgatga tggtagccat gctgaacaac caggacattg aagccagccc tgtactgctc
     3421 agcacgagga gccatggatg gacacatgag atctacccgc tcatggaccg ttttaattat
     3481 gtagtggcgg aagtgagcat tgaagggaag aagttttacc tcgatgcaac cgagccgggg
     3541 ctgccatttg gcgtgctgcc gccacaatgc tacaacggtc atgcacgggt gatgaaagga
     3601 caagggatgc cggtatattt ttcacctgat tcggccatcg aaaagaaaac caccacagtg
     3661 attgtgacct atacagacga gaaagagtgg gtagcttcac tcggatccag cctgggtaat
     3721 ttcgaatcgc tcaacctgcg cagcgaagtg aaaaagaatg gaaaggaacc tgagaaagaa
     3781 aaaatcagga aatcaattcc cgccgaatta gaactcaccg atgtgaatat tcgcaacatt
     3841 gactcgactg aagaaaatgt gaaggtggag tgcaaaataa agttgcctgt agaaggggaa
     3901 gatgttattt acctcaaccc catgtttggc gaggcttaca aggaaaatcc attttcatcg
     3961 gcagaacgtt tgtacccggt ggaaatgcct tacgccatga atgaattgtt tgtagccaat
     4021 atccagttac ccccgggcta tgtggtggat gagatgccca aaagcgcaaa agtggctttg
     4081 ccagataatg caggaatgtt tgaatatatg attggcggcg aacctgatca tgtgatgctc
     4141 aagtctcgca tagtactcaa ccgggccaat tacgctgcgg aggaatatga atacctgcgt
     4201 gagttcttca gttatgtggt gaaaaagcag gccgaaacca tcgttctcaa aaagaaagca
     4261 gaaggcaaat gaaaacaata ggcaactgga ttgtattaat gctgttggtg ctacaggccc
     4321 aggcacagca gtttgcagtc aaactcattc ccgatagttt attgaaaggc gctgatgtag
     4381 tagtgcgggt ggatgaaatg aaactcgaaa tagcagacaa aggcaaagca cattttagaa
     4441 cacggattgc ctacaccatc ctgaatgaaa aggccgacta tctttccatc cagcaaaacg
     4501 gttacgataa gtttatcagc atcgacaata tcgatgccaa cctgtatgat gcggatggca
     4561 ataagatcaa gtcacttcgt aaatcagaca tcaaggattt gagtgacatg gggggcggta
     4621 ccgatatatc cgacgatcgc atcaaggaat acggttttta tcacaagacc tatccctata
     4681 cggtggagtt tgaagtaagc accacctata aagggttgat gttcctgcca acctggtacg
     4741 ccttatcgaa tgagcggatc agtgtggagc aaaccagtta ttcggttacc tatcccggcg
     4801 atgcgcctgt tcagttcaaa gcattcaact atccgggcga accgaaacgt tccgctcagg
     4861 gcaacaatac caccctggtt tgggaaatga aaaacctgaa ggccttgttg aaagagccgc
     4921 tggcacccgc atggcacgaa ataacaccgg tggttttttt ggccatgaaa gatttcatga
     4981 tggatggtta taccggcagc aacgcctcct gggaaaaact gggcgacttt gtgtaccagt
     5041 tgaaaaaagg aagggatgtg ctgccttacg agatacaagg gaaagtgaag gaaatggtgg
     5101 caggcaagca aaccactttt gaaaaggtgg atgccttgta caagttcatg caaagcaata
     5161 cccgttacat cagcatacag ctgggcattg gcggctggca accctatgac gcctcttatg
     5221 tgtacaccaa gaaatatggc tattgtaaag cgcttaccaa ttacatggca gccttgctga
     5281 atgcggttga aattccctcg gtatatgcat tggtgaaagc gggcagcggg cagttgcgtt
     5341 tcatggaaga ctttcccagt tcgcaattca accacgtgat cctttgcgtt cccaatggca
     5401 atgattccat ctggctggaa tgtaccagcc aaaccatgcc caccggctac ctcggcgatt
     5461 tcaccaacaa ccgcccggta ctcatggtaa aagaaacagg cagcaggctg ggccgcaccc
     5521 ccgattacag cattgatcaa aacctgcagc tgcgtcgcat tcaggctacc gtaaatgccg
     5581 atggtacact aacctgcacc gccaacaatg aataccgggc catgcagcag gatgatttgc
     5641 acggcctcat caacgcgtat ccattggaca aacagaaaga agtactgcag caacagttca
     5701 acctcggcac ctacagtgtc aaaagtttca agtacactga gttgtcttcc aaacttccgg
     5761 tgatcgaaga aaagctggaa ctcgaagcct tgaactatgc gcagatatcc ggcaagcgac
     5821 tgatgcttca gccgaatatt ctttcgcgga gcaactggcg gctgcaaaaa gattccaccc
     5881 gcaaattcga tttccttttc agctatccgt acactgatgt tgactccgtg caaattgaag
     5941 tgggcgaggg ctataccgtg gaagccctgc ccaggccgca aaagatcgaa aatgaattcg
     6001 gctattttga aacacgcaca gaactggtag gaagcaaggt gctttactat cgcaaaatac
     6061 aacgcaaggc agggcagttc ccgccagcca aatgggagtc attggtgaaa tacctcgatg
     6121 atattacgag ggccgaccgg cagaaaatag tactggtaaa aaaagaagcc tgataagagc
     6181 atttcattcc ggggcctgca attatttcag cctgaaagat atcttactgt ctttcaggct
     6241 gtttttatgt gggccacctg ccaaaattac atgctttttg gagatggtgt aaggtttgat
     6301 gcttctgtgg atgttaga
//
LOCUS       DATIQF010000658         2085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_208366,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000658 DATIQF010000000
VERSION     DATIQF010000658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2085
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208366"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..707)
                     /locus_tag="VLL95_11140"
     CDS             complement(<1..707)
                     /locus_tag="VLL95_11140"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: protein motif:HMM:NF002032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HSR39460.1"
                     /translation="MGSLSTKHLLGIKNLLKEDISTILTTAAQFKEVLQRPVKKVPSL
                     RDVTIVNLFYENSTRTRISFELAEKRLSADTINFSASGSSVSKGETLLDTVNNILSMK
                     VDMVVMRHSASGAPHFLAKHIPAAIVNAGDGINEHPTQALLDAFSIQEKTGGLEGRKV
                     AIIGDIMHSRVALSNIYLLKKMGAEVLVAVPPTLIPKYIEQALGVRVEYDVKKALAWC
                     DVANVLRIQLERQSQVL"
     gene            complement(749..1837)
                     /locus_tag="VLL95_11145"
     CDS             complement(749..1837)
                     /locus_tag="VLL95_11145"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HSR39461.1"
                     /translation="MSVSSKALAQEANQAMLMLQGTVAASANNQFAAIIDPQKGSYIG
                     SPARITNQSFKISTNLPAATLYVLMIGDPSNQSSLKYYNVFLANEQVELNVPEGTNEV
                     KVTKGETPLDFAALVQQMGPEFDAMNAVDKAKQSAGTYNYNSDSLDQERSKVVERIHS
                     KVPVYLQSHHSTAVAPFLLNLVWPLNFPLAELESWAKMIDEKAMQSDYGVALNDLITT
                     EKMLGYGQKAPAFTQNNQDGKPVTLESFKGKYVLIDFWASWCGPCRMENPNVVRAYEQ
                     FKSKNFTVLGVSLDKDKGKWLKAIEDDNLKWTHVSDLGYWNNAVAVMYKVRSIPQNFL
                     LDPDGRIIGKNLRGEELTGFLQKVLASN"
BASE COUNT          503 a          531 c          493 g          558 t
ORIGIN      
        1 aacaaaacct ggctttgacg ttccaactgg atgcgcagca cattggccac atcgcaccag
       61 gccagcgcct tttttacatc gtattctacc cgcacgccca gcgcttgctc aatgtacttg
      121 ggaataaggg ttggcggaac ggcaaccagc acttctgcac ccattttctt gaggagatag
      181 atattgctga gtgccacccg gctgtgcatg atgtcgccaa tgatggccac ttttctgcct
      241 tcgaggccac cggttttttc ctgaatcgaa aaagcatcca gcaaggcttg cgttggatgc
      301 tcattaatgc catcgccggc atttacaatg gcggcaggaa tgtgctttgc cagaaagtgg
      361 ggagctccgc tggcactgtg gcgcatcacc accatgtcca ctttcatgct caggatattg
      421 ttgaccgtat ccagcaatgt ttcgcccttc gacactgaag aaccgctggc ggaaaaatta
      481 atggtatcag cgctcagccg tttttccgcc aactcaaaag agatgcgggt tcgtgttgaa
      541 ttctcgtaga agagattgac gatggttaca tcgcggagcg aaggaacttt cttgactggt
      601 cgctggagta cttctttgaa ttgcgctgct gtggtaagaa tggtggaaat gtcttcctta
      661 agaaggtttt taatgcccag caggtgcttt gtagataaac tgcccattaa aaatcaaaga
      721 tagggctacg catcatgtgt gcagcaaatt aattgctggc gagcactttt tgcaggaagc
      781 cggtcagctc ttccccacgc aaatttttgc caatgatgcg gccatccgga tccagcaaaa
      841 agttttgcgg gatactgcgc actttgtaca tcactgccac tgcgttattc cagtaaccca
      901 ggtcgctcac atgggtccat ttcaggttat catcctcaat agctttcagc catttgcctt
      961 tgtccttgtc gaggctcacg cccaacacgg tgaaattctt cgatttgaat tgctcataag
     1021 cccgcaccac attgggattt tccatgcggc atggcccaca ccagctggcc cagaaatcga
     1081 tcagcacgta ttttccctta aagctctcca gcgtcacagg cttaccatcc tgattgtttt
     1141 gggtgaaagc cggcgctttc tgcccataac ccaacatttt ttcggtggtt atcaaatcat
     1201 tcaatgccac gccgtagtca gactgcatcg ctttttcatc aatcattttt gcccagctct
     1261 ccaattccgc cagcggaaaa ttcaagggcc aaaccaggtt gagcaggaat ggcgccactg
     1321 ctgtagagtg atgcgattgc aggtaaacag gcactttcga atggatcctc tccaccactt
     1381 tgcttctttc ctggtcgagg ctgtctgagt tataattata agtacctgca ctttgtttgg
     1441 ccttgtccac cgcattcatg gcatcaaact caggccccat ttgttgtacc agggcggcaa
     1501 aatccaacgg agtttctccc ttcgtcactt tcacctcgtt ggtcccttcg ggcacattca
     1561 gttccacctg ctcattggcc aaaaacacat tgtagtattt caggctgctt tggttagagg
     1621 gatctccaat catgagcaca tacaaagtgg ccgcaggaag gttggtcgat attttgaatg
     1681 actggttggt aatgcgggcc gggctgccga tgtaactccc cttttgcgga tcaatgatgg
     1741 cggcaaactg gttgttggca cttgccgcta cagtgccctg cagcatcagc attgcctggt
     1801 tggcctcctg ggccagggcc ttcgaagaaa ctgacaaacc cagtacagtt gtcagcaata
     1861 atattccgga aaaaaggtgt cgcatagcta ctttcgcaag caagtttcaa atgaatttat
     1921 ccgtttcaaa agtaagggat tggcaagcca accattcgcc tgaatggtca cattcaactt
     1981 gcccttgttg aaaaataacc gtgtattagc aaaaaattac aggaagtaac tcatgaaaaa
     2041 ggttggaata ctgggaggcg gacaattggg ccggatgctg ctgca
//
LOCUS       DATIQF010000659         1631 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_283931,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000659 DATIQF010000000
VERSION     DATIQF010000659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283931"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..875)
                     /locus_tag="VLL95_11150"
     CDS             complement(<1..875)
                     /locus_tag="VLL95_11150"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39462.1"
                     /translation="MKIFSTILLMNASLIAAAQMQYPQTRKTDQKDNYHGTTIPDPYR
                     WLEDDNSEETKQWVLAQNKVTDQYLASIPFRAKVKQRLEELWNYPKYGSPTRKGDYYY
                     FSKNDGLQNQSVIYRQRGLDGAPEVFLDPNKLSSDGTAALGAFSISRHYKYAAYQLAQ
                     SGSDWQEVFVMRTDTREKLSDHLKWIKFSGIAWKGDEGFYYSRYPAPEAGNELKGKNE
                     FHQVWYHKIGTSQDQDELVYEDKSHPLRTTVAEVTEDERFLIISSSEGTSGAELKVKD
                     LKNPNQKDFILLVKG"
     gene            1055..>1631
                     /locus_tag="VLL95_11155"
     CDS             1055..>1631
                     /locus_tag="VLL95_11155"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF002872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006002 - fructose 6-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent 6-phosphofructokinase"
                     /protein_id="HSR39463.1"
                     /translation="MSNKISKIGVLTSGGDSPGMNAAVRAVVRTGLYHGMEVFGIYRG
                     YSGMVEDDIQPLTSRSVANIIQRGGTILKTARSKEFMTPEGRKIAYENLQKHGINGLV
                     IIGGDGSFRGAQVFSNEYDIPCIGIPGTIDKDIAGTDFTIGFDTAVNTAIRAIDKIRD
                     TADAHDRLFIVEVMGRDAGYIALHSGIGTGAE"
BASE COUNT          396 a          386 c          397 g          452 t
ORIGIN      
        1 aatcccttta ccagcagaat gaaatctttc tggttgggat tcttcagatc tttcactttc
       61 aactcagcgc cactggtgcc ttctgaactg ctgatgatca aaaatctttc atcctcggtt
      121 acctctgcca ccgtggtgcg cagcggatgc gatttgtctt catacaccaa ttcatcctga
      181 tcctgcgaag tgccaatttt atgataccaa acctggtgga attcgttttt ccctttcagt
      241 tcattgcccg cttccggggc aggataacga ctgtagtaga agccctcatc gcccttccac
      301 gcaatgccac tgaacttgat ccacttgagg tgatcgctga gcttttcccg ggtgtcggtt
      361 ctcatcacaa aaacttcctg ccagtcgctg cctgattgcg ccaactgata ggccgcgtat
      421 ttgtaatgac gcgaaatgct gaaagctccc aacgctgctg taccatcgga cgaaagcttg
      481 ttgggatcca ggaaaacttc aggtgctccg tcaagcccac gctgcctgta gatcacactt
      541 tggttttgca aaccgtcgtt cttggaaaaa tagtagtaat cacctttgcg ggtgggcgat
      601 ccgtatttgg gatagttcca cagttcttcc aatcgctgtt tcactttggc ccgaaatgga
      661 atagaagcca ggtattggtc agtgacttta ttctgggcca gcacccattg ctttgtttcc
      721 tcactgttgt cgtcttccag ccaccggtaa ggatcgggaa tagtggttcc atgataattg
      781 tctttctgat cggtcttgcg ggtctgtgga tactgcattt gagcagcggc aataagcgag
      841 gcattcatga gtagaatggt ggaaaatatt ttcatatgaa aatggtttca atcgttggca
      901 atttattgaa ggttattaag attggtgttg gattattaaa ctatgttcaa caagtagccc
      961 ttcctgcgtt caaaaggtgt caaaatccta catttgcctg atttgtgtac gtaatacact
     1021 tatttggact ttacaaacat tgaccttaac aaccatgagc aataaaattt caaagatcgg
     1081 tgtacttact tccggtggcg acagccctgg catgaatgcc gctgtaaggg cggtggttcg
     1141 cacgggcctt taccatggca tggaggtatt tggcatttac cgtggctaca gtggcatggt
     1201 ggaagacgac attcagcccc tgaccagcag aagcgtggcc aatattattc aacgtggtgg
     1261 caccattttg aaaacagccc gcagcaaaga attcatgacc ccagaggggc gcaagatcgc
     1321 ttacgagaat cttcaaaagc acggcatcaa tggcctggtg atcattggtg gcgatggcag
     1381 tttcagaggc gcacaggtat tcagcaatga gtatgatatt ccttgcattg gcatacccgg
     1441 cactattgac aaggatattg ctggcaccga ctttaccatt ggatttgata cggcagtgaa
     1501 cactgccatc agggccatcg acaaaattcg cgatacagcc gatgcacacg accggttgtt
     1561 tattgtggaa gtgatgggac gtgacgccgg atatattgcc ctgcacagtg gcattggcac
     1621 cggggccgag c
//
LOCUS       DATIQF010000660         4467 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_269201,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000660 DATIQF010000000
VERSION     DATIQF010000660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4467)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4467)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4467
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269201"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(174..1199)
                     /locus_tag="VLL95_11160"
     CDS             complement(174..1199)
                     /locus_tag="VLL95_11160"
                     /inference="COORDINATES: protein motif:HMM:NF014798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HSR39464.1"
                     /translation="MQIEPIAAHYSDSSPLINGYEVLNRYFDQLFANNKKVLAFGEDV
                     GHIGDVNQGFAGLQARHGETRIFDTGIREATIMGQGIGLALRGLRPIAEIQYLDYLLY
                     GLQPLSDDVASLHYRTFGQQSCPIIVRTRGHRLEGIWHSGSPMGMIINSLRGMYVCVP
                     RNMVQAAGMYNTLLQSNDPAIVIECLNGYRLKEQMPDNIGSMRVPLGVPEIIRSGTDI
                     TIVSYGSTLRVIMEAAARLQQLGIDVEVVDVQTLLPFDIHHIILASLKKTNRILFVDE
                     DVPGGAAGYMFNKVMEEQGGYRWLDASPRTLTGKAHRPAYGSDGDYFSKPNAEDVVRV
                     VKEMMAE"
     gene            complement(1221..2561)
                     /locus_tag="VLL95_11165"
     CDS             complement(1221..2561)
                     /locus_tag="VLL95_11165"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent dehydrogenase
                     E1 component subunit alpha"
                     /protein_id="HSR39465.1"
                     /translation="MESLIAASQQAEVLSFESFRNEVLKDYRVAMTSRQVSLMGRREV
                     LTGKAKFGIFGDGKELPQVALAKFFQPGDWRSGYYRDQTWMFALGLATVERFFAQLYA
                     DPYVENDPWSAGRQMNAHFTSKNVMHDGTWLPLADQYNVATDMAPTAAQVPRALGLAL
                     ASKIFRQLPDLDTLQQLSKQGHEVCFCSIGDASTSEGHFWETMNAACVLQVPLAMFVW
                     DDGYGISVPKEKQTTKGSISEALKGFEATAGANGMKIFKVKAWDYAGMCEAFEQGIAH
                     IRKTHMPALFHVEEVTQPQGHSTSGSHERYKSPERLEWEREWDCIKKFKEWILTNELA
                     TEEEMDEIDADIRHQVKDGKDKAWATFLQPVLALQQQVRELLEAAIQQGQDASGQLAA
                     ALQELNAHKEPLRRDVLKPLNTGIDFASGAVAEEMKALLSEQSQLNAYLFNSYL"
     gene            2722..3147
                     /locus_tag="VLL95_11170"
     CDS             2722..3147
                     /locus_tag="VLL95_11170"
                     /inference="COORDINATES: protein motif:HMM:NF019242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1573 domain-containing protein"
                     /protein_id="HSR39466.1"
                     /translation="MKRHFLALIASVLLLSVSAWAQDKKETLWINESSHDFGKIPQGK
                     PVYTHFELKGLGDSLKLEMVQAGCGCTTPEFKAGTYAPNELVKIKVGFNAAAVGPFNK
                     PITITYNNGQQKVIMITGTVEQTPSTPAPGNGAVGKIKQ"
     gene            3225..3602
                     /locus_tag="VLL95_11175"
     CDS             3225..3602
                     /locus_tag="VLL95_11175"
                     /inference="COORDINATES: protein motif:HMM:NF019242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1573 domain-containing protein"
                     /protein_id="HSR39467.1"
                     /translation="MKHFLTLCLMMLAATGLQAQAKVDDLIRFEKTEHQFGKVPKDKP
                     VTVEFAFSNPGSKPLIIEDATAECGCTKPEYPKKPVMPGQKGTIKVTYDAKEPGAFNK
                     KVTVKLVNVGETKILTIKGEVEK"
     gene            3675..3748
                     /locus_tag="VLL95_11180"
     tRNA            3675..3748
                     /locus_tag="VLL95_11180"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3709..3711,aa:Met,seq:cat)
     gene            3982..>4467
                     /locus_tag="VLL95_11185"
     CDS             3982..>4467
                     /locus_tag="VLL95_11185"
                     /inference="COORDINATES: protein motif:HMM:NF014659.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HSR39468.1"
                     /translation="MKLRAGQVIISTALLDGTNFEKAAILLTECNDKGAMGFVFNHPS
                     GRTFNELVEFADAPALPLFAGGPSETDMLYFVHRRPDLISGGDAVTGNICSGGDFTRT
                     VALLKEGKLPPQDLKLFTGYCGWDSGELEAEIEEGSWLLCEAPAELLFATEYQPLWED
                     LL"
BASE COUNT         1046 a         1224 c         1135 g         1062 t
ORIGIN      
        1 agcctgcggt caatagcctg tcgggcgccg ctgatggcaa aagccgcggt acccagtaca
       61 tcaattatga aaaggacatc aaaaacaggc atgtggcgtt ggttgcagat cgcaagttac
      121 aggttgcagg tcttgcctcc ctgtcaactt tccaacccgc caaaattttc aacctattcc
      181 gccatcattt ctttcaccac ccgcaccaca tcttccgcat tgggcttgct aaaataatct
      241 ccatcgctgc cataagcggg acgatgcgct ttgcccgtaa gggttctggg agatgcatca
      301 agccagcgat agccgccctg ctcttccatc accttgttga acatgtaacc ggcggctccg
      361 cccggcacat cttcatctac aaacaaaatg cggttggttt ttttgagcga tgccagtatg
      421 atgtgatgga tatcgaaggg caacagggtt tgtacgtcta ccacttcgac atcaataccc
      481 aactgttgca ggcgggcagc cgcttccata atgacgcgga gcgtggagcc gtatgaaacg
      541 atggtgatgt cagttccgga gcgaatgatt tcgggcacac ccaggggaac ccgcatgctg
      601 ccgatattgt caggcatttg ttccttcagg cgatagccgt tcaggcattc aatcacgatg
      661 gcaggatcat tgctttgcag caaggtgttg tacatgccgg cggcctgcac catgtttcga
      721 ggcacgcata cgtacatgcc ccgcaggctg ttgatgatca tgcccatggg gctgccactg
      781 tgccagatgc cctccaggcg atggccacgg gtgcgcacaa tgatgggaca gctttgctgg
      841 ccgaatgtgc ggtaatgcag cgaagccaca tcatcgctca gcggctgcaa accatacagc
      901 aggtaatcga ggtattgtat ctcggcaatg ggacgcaagc cacgcaaggc gagaccaatg
      961 ccctgcccca tgatggtggc ttcacgaatg ccggtgtcaa atatgcgtgt ctcgccgtgc
     1021 ctggcctgca ggccggcaaa gccctggttc acatcgccga tgtggcccac gtcttcgcca
     1081 aaagccagca cctttttgtt gttggcaaag agctggtcga aataacggtt gagcacttcg
     1141 tagccgttga ttaacggcga actgtcgctg tagtgggcgg caatgggttc tatctgcaag
     1201 gcactggcag gcccttcgtt ttacaaatag gaattgaaca aataggcatt cagctgcgat
     1261 tgctcagata gcaacgcttt catctcttcg gccacagcac cgctggcaaa atcaataccg
     1321 gtgttcaatg gtttcagcac atcgcggcgc aacggttctt tgtgcgcatt caattcctgc
     1381 aaggcggcgg ccaattgccc actggcatcc tgaccctgtt ggatggcggc ttccagcagt
     1441 tcgcgaacct gctgctgcaa agccagcacc ggttgcaaaa aggtcgccca ggctttgtcc
     1501 ttgccgtctt tcacctggtg ccggatatcg gcgtctattt cgtccatttc ctcctcggtg
     1561 gccagttcat tggtcagtat ccactccttg aactttttga tgcaatccca ttcccgttcc
     1621 cattccagcc gctccgggct cttgtagcgt tcgtggctgc cgctggtact gtgcccttgt
     1681 ggctgcgtca cttcttccac atgaaagagg gcgggcatat gtgttttgcg gatgtgggca
     1741 atgccttgtt caaacgcttc gcacatgccg gcatagtccc atgccttcac tttgaagatc
     1801 ttcatgccat tggctcctgc tgtggcctca aagcctttca acgcttccga aatggaacct
     1861 ttggtggttt gcttttcttt gggcactgaa atgccataac catcatccca cacaaacatg
     1921 gcaagcggca cctgcaatac acaggccgcg ttcatggttt cccaaaaatg tccctcgctg
     1981 gtggaggcat ccccaatgga gcaaaaacaa acttcatggc cctgcttgct tagttgctgc
     2041 agcgtatcga ggtcggggag ttgccggaat atttttgacg ccagcgccag gcccagggcc
     2101 cggggcactt gcgccgcggt gggggccata tcggtggcca cattgtattg gtcggccaat
     2161 ggcagccagg tgccatcgtg cattacattc ttgctggtaa aatgggcatt catttggcgc
     2221 ccggcactcc agggatcatt ctccacgtaa gggtcggcat agagctgggc gaaaaaccgc
     2281 tccaccgtgg caaggcccag cgcaaacatc caggtctgat cgcggtagta gccgctgcgc
     2341 cagtcgccgg gctggaaaaa tttggccaat gccacctgcg gcaattcctt gccatcgccg
     2401 aaaatgccaa atttggcctt tccggtcagc acctcacgcc tgcccatcag gctcacctgg
     2461 cggctggtca tcgccacacg gtaatctttc aatacttcgt tccggaagct ctcaaaagac
     2521 aatacttccg cttgttgcga ggcagcaatc aaactttcca tgcggcaaat gtaattgatt
     2581 ggagtgcaaa ttgaaggcgc ccggaggcgg ttcattattt cgtaacccct gctgcctcct
     2641 gccaatttta acagcggctg cagtaccttt gtaaggcaca tttgaataat tttaaactta
     2701 caaccaatca aatctcattt tatgaaaaga cattttctcg ccttgattgc aagtgtattg
     2761 ttgctgtctg tatctgcgtg ggcacaagac aagaaagaaa ccctctggat caacgaaagc
     2821 tcacacgatt ttggcaagat cccccagggc aagcccgtat acacccattt cgaactgaag
     2881 ggtctgggcg attcgctcaa actggaaatg gtacaggccg gttgcgggtg caccaccccc
     2941 gaattcaagg cgggtactta tgcccccaat gaattggtga agatcaaagt aggctttaat
     3001 gccgccgctg ttggcccttt caataagcca atcaccatta cttacaacaa tggtcagcaa
     3061 aaagtgatca tgatcaccgg tacggtggag caaacccctt ctacccctgc tccgggcaat
     3121 ggcgccgtag gcaagatcaa gcaataacac attcaacttt ttatatcgaa agcgccgaac
     3181 tggtttggcg ctttcttttt gccctcccca tattccaatt gcccatgaaa cattttctga
     3241 cgctctgcct tatgatgctg gccgcaaccg ggctgcaggc ccaggccaaa gtggatgatt
     3301 tgatcaggtt tgagaaaacc gaacaccagt ttgggaaagt gcccaaggac aaaccggtca
     3361 ctgtggaatt tgccttcagc aaccctggca gcaagccctt gatcatagaa gatgctaccg
     3421 ccgaatgcgg ctgcaccaag ccagaatacc caaagaagcc ggtaatgccg gggcagaaag
     3481 gcaccatcaa agtgacctac gatgccaagg agccgggcgc cttcaacaaa aaggtaacgg
     3541 tgaaactggt gaacgtgggc gaaaccaaaa tactcaccat taagggtgaa gtagagaaat
     3601 gatgtttggc aatccattgc caattttggt ttggatgatc agtggatttc cccctacatt
     3661 tgccacccaa aattggcggg gtagctcagc tggttagagc atcggattca taacccgaag
     3721 gtcggcagtt caagtctgct ccccgctaca aaacagaggc gtcacactga gtggcgcttt
     3781 ttttgtgtcg cacagagaca cagagatttc agtttcagaa taaacgctca attaaaatcc
     3841 gcgaatctgc ggccaatctt ccaccacttt ttttcgcaga gtgtcacaga gctgtcctga
     3901 atttccactc tatttatatc tgcgaatctg tggctaaagc ccgcctgaca aatggtacct
     3961 ttgttgaaca aaagttgctc tatgaaactg cgggccggac aggtcatcat cagcacggcg
     4021 ttgctcgatg gtaccaattt tgaaaaagct gccattctgc tgacagaatg caacgataaa
     4081 ggagccatgg gttttgtatt caaccacccc agtggccgca ccttcaacga gctggttgaa
     4141 tttgctgacg ccccggccct gcccctcttt gccggcgggc catctgaaac cgacatgctc
     4201 tattttgtgc atcgtcggcc tgatctcatc agtggtggcg acgcggtaac gggaaacatc
     4261 tgctccggcg gtgattttac ccgcacggtg gcattgttga aggaaggcaa actgccccca
     4321 caagacctca aactctttac cggttattgt ggctgggata gcggcgaact ggaagctgaa
     4381 atagaggaag gcagctggct gctttgcgaa gcgccggccg aactgctgtt tgccaccgaa
     4441 taccaaccat tgtgggaaga cctgctg
//
LOCUS       DATIQF010000661         7390 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_177683,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000661 DATIQF010000000
VERSION     DATIQF010000661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7390)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7390)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7390
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177683"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            225..470
                     /locus_tag="VLL95_11190"
     CDS             225..470
                     /locus_tag="VLL95_11190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39469.1"
                     /translation="MPLEYGTQKTVSAHQKLPQLWPSFFMAKEMGESLGGGKVLQRQV
                     QEANKKGGQVKTMVAATVLNHHSQYLGYAVFTYCMWE"
     gene            539..2266
                     /locus_tag="VLL95_11195"
     CDS             539..2266
                     /locus_tag="VLL95_11195"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSR39470.1"
                     /translation="MRITIFATCAMMVAFFACKNNHQNEPAFSGTQGIATMFFGGDII
                     TMEGDSAQYAEALVVKDGKIAFVGSKDEAMKAAGEGHQMVDLKGKTLVPGFFDGHAHF
                     FGFGAQAVTANLLASPDGTCDDIPSLVKALKDWTATADLSKTNGWIAGMGFDDAVLKE
                     NRFPTRHELDLVSKDTPVMIVHISAHFCVMNTKGLEVAGITAASKNPEGGVIRREADG
                     KTPNGVLEELAAIPQMTKAIAPATPEAAVYFLEKGQEMAASFGHTSVQEGRAMQPQHN
                     AIASFAEAGKLKLDVATYVDYTAPELFRTKWYSKAYQNHYRIAGIKLTLDGSPQGRTA
                     WRHAPFLLPPDGQPKTYKGYPAIPGDDDVFKVFDTAFANNYQILVHANGEAAIDQMIR
                     GVSYAAAKYGNNDRRTVLIHGQFITMSQLDSMKKYDVVASLFPMHTFYWGDWYKKIIG
                     PEKAQQISPINSALKKGLHVTSHTDAPVAFPNMMMILWTTVNRVSLAGTVMGPDERLT
                     AYQALQTITAWGAWQHGEEAQKGTLTAGKLADLVILDQNPLKIDPMKLKDIKVVETIK
                     EGKSVFKRN"
     gene            2509..3129
                     /locus_tag="VLL95_11200"
     CDS             2509..3129
                     /locus_tag="VLL95_11200"
                     /inference="COORDINATES: protein motif:HMM:NF037007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSR39471.1"
                     /translation="MAKIVQEVQNAEEKILAAARKVFLHKGYTGARMQEIADEAGINK
                     ALLHYYFRSKEKLFEEIFREAFGKLLPSLAGIFKEPISIFEKIERFTEGYITVVLEHP
                     YIPVFVLSEMHRNPDEFFETYVRPDLRSNVQLIGKQFAEAITQGLIRPTDPRQLMMNM
                     MSLCVFPFVARPMLQRMIQASDKTYHSLLEQRKKEVSQFIIAAIKP"
     gene            3167..4411
                     /locus_tag="VLL95_11205"
     CDS             3167..4411
                     /locus_tag="VLL95_11205"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSR39472.1"
                     /translation="MLLFVVGRIHAQALQQISLPQVQEWAADNFPLLKQKALARQAAL
                     ANNSTLSNNFLPQVSLGAQATWQSAVTEVPVRIPGFAPEPLSRDQYRATLDVNQLVYD
                     GGLNKQQKLMNELQALLKSEEVNMGLQQLKDRINNLYVSILLLDKQRQQNALVLKDLE
                     ASLAKVEAQVKNGTAYRSNLALLQSEKLKARQKDIELRTDREGMIDVLSLYTNQAIAP
                     QATLSTPAAPGLFAEDEITRPELQYYKLRDSLAQQQTALIDGRLRPSISLFANSGYGL
                     PGLNMLKNEFAPFITTGVRLRWNISGFYSSKKERELADITRRDVQAQTENFLLNTKSQ
                     LRQQQSNIQKLRQLLETDQEIVLLKTQVKEAAAAQLEHGVITASDYLREVNAEDQARQ
                     MQMLHQLQLLQAFLTYSTIAGK"
     gene            4418..5365
                     /locus_tag="VLL95_11210"
     CDS             4418..5365
                     /locus_tag="VLL95_11210"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HSR39473.1"
                     /translation="MTAKISSLLLIAAVLSLTACRNNDFPFDASGTFEADEVIVSSEV
                     AGKILSMELEEGDQLKKDSITVVIDAGNLALQKEQVEASMMALKEKTYDVNPQLQLLQ
                     DQLKVQEAQMETLQKEQRRFSALVKADAATPKQLDDINAQIEVLQQQMLVTRQQMKVQ
                     ESNTATQNRSVLSETDPLAKRADIIADQIDRSKVINPVNGTVLTKYAHAGEVIGAGKG
                     LYKIADLSSLLLRAYVTGDQLPQIKLGQAVKVYVDKGKKDYKEYSGKITWIADKAEFT
                     PKTIQTKEERANLVYAIKVLVPNDGYLKIGQYGEVKWSQ"
     gene            5400..6317
                     /locus_tag="VLL95_11215"
     CDS             5400..6317
                     /locus_tag="VLL95_11215"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR39474.1"
                     /translation="MLAIHAENITKRYPNGKQSTTALQKLSLQVQQGELFGLIGPDGA
                     GKTSLIRILTTLLLPDEGTASVDGLDIQKDYRKIRQRIGYMPGKFSLSQDLSVQENLD
                     FFATIFNTSIRENYHLIKDIYEQIEPFKHRKAGKLSGGMKQKLALSCALIHKPSVLFL
                     DEPTTGVDAVSRKEFWHMLQQLKAEGLTILVSTPYMDEASLCDRVALMQEGRFLEIDT
                     PADIIERHPKKVWAIKSANMYGLLKHLRQLPEIDSVYPFGEFHHFTLRENEMEAPLQR
                     LQPPNEKVELLSIQPNIEDVFMHLMHNHD"
     gene            6310..7062
                     /locus_tag="VLL95_11220"
     CDS             6310..7062
                     /locus_tag="VLL95_11220"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR39475.1"
                     /translation="MIDHSQHIITADRLTKTFGDFIAVDAISFEVSRGEVFGFLGANG
                     AGKTTAMRMLCGLLAPTSGKATVAGFDVYQQSEKIKQNIGYMSQKFSLYEDLTVKENM
                     RLYGGIYGMSTKAIKEKTAQIVEELHLQKEQNTLVRSLPLGWKQKLAFTVAIFHNPPL
                     VFLDEPTGGVDPITRREFWEMIYQAAAQNTTVFVTTHYMDEAEYCDRVCIMVDGKIEA
                     LDKPALLRQQFEADSMDGVFLQLARKAKRMGD"
BASE COUNT         2138 a         1876 c         1816 g         1560 t
ORIGIN      
        1 agactgttaa agcaacagaa gcaggaacga ccacagccat caaccggaag catctgcaac
       61 ccggtaccta tttcgtaaaa gtcaccgatc gggaaacggc cactaccacc accaggaaac
      121 tgatgataca atagcggttg acttccggca tttcattttg aaaagggcaa tcgtcaccgg
      181 cattgccctt tttttacaac aaacagttgc tgaaattgta ttgtttgcca ctggaatatg
      241 gcacacaaaa aaccgtttct gcccaccaaa aactgcctca gttgtggccg tcctttttca
      301 tggcgaaaga aatgggagaa agtttgggag gaggtaaagt attgcagcga caggtgcagg
      361 aagccaacaa aaaaggtggg caggtgaaaa caatggttgc tgctaccgtc ctgaatcatc
      421 attcccaata ccttggctac gcagttttca cttattgcat gtgggaatag caaaggtgtt
      481 gtggcgtttt caaatcaatt atctttcaat tcacctttaa cctacaacgc tttcagctat
      541 gagaattaca attttcgcca cttgtgcgat gatggtggct ttctttgcct gcaaaaacaa
      601 ccatcagaat gaacctgcat tctcaggtac ccagggcata gctactatgt tttttggtgg
      661 cgacatcatt accatggaag gcgacagtgc ccagtatgca gaggcattag tagtaaaaga
      721 tgggaaaatc gcctttgttg gcagcaagga cgaagccatg aaggcggcag gcgaaggcca
      781 ccaaatggtg gacctgaagg gtaagaccct ggtgcccgga ttttttgacg ggcatgccca
      841 cttcttcggt tttggtgcgc aagctgtaac agccaaccta ttggccagcc ccgatggcac
      901 ctgcgacgat atccccagcc ttgttaaagc cttgaaagac tggacggcaa cggctgacct
      961 gagcaagacc aatggctgga tagccggcat ggggtttgat gacgccgtac tcaaagaaaa
     1021 ccgatttccc acccggcacg aactggacct cgtgtcaaaa gacacgccgg taatgatcgt
     1081 gcacatttcg gcccacttct gcgtgatgaa cactaagggc ctggaagtgg cgggcattac
     1141 tgccgcctcc aaaaatccgg aaggcggcgt cattcgccgc gaagccgatg gcaaaacccc
     1201 caacggcgtg ctcgaagaac tggcagccat tccgcaaatg accaaagcca tcgctccagc
     1261 cacgcccgaa gcagctgttt acttcttgga gaagggccag gaaatggcgg ccagttttgg
     1321 ccatacatca gtacaggaag gccgcgccat gcagccacaa cacaacgcca ttgccagctt
     1381 tgccgaagca ggaaagctga aattggacgt agccacttat gtggattaca cggcgccaga
     1441 attgtttcgc accaagtggt acagcaaagc ctaccaaaac cattaccgga ttgccgggat
     1501 aaaactcaca ctggatggat caccgcaggg ccgcacagcc tggcggcatg cgcccttcct
     1561 gttgcccccc gatggccagc caaaaaccta taaaggatac cctgccatcc ccggcgatga
     1621 tgacgttttc aaagtttttg acaccgcgtt tgccaataac taccagatcc tggtgcacgc
     1681 caatggcgaa gcggccatcg accaaatgat ccgcggtgta tcgtatgccg ctgccaagta
     1741 tggcaacaat gaccggcgga cagtgctgat ccatggccaa ttcattacca tgagtcaact
     1801 ggacagcatg aagaaatatg atgtggtagc atcccttttt cctatgcaca ctttctattg
     1861 gggcgattgg tataagaaaa tcatcgggcc cgaaaaagca cagcaaatca gccccatcaa
     1921 tagcgctttg aaaaagggct tgcatgtaac cagccacacc gatgcaccag tggcttttcc
     1981 gaacatgatg atgattttgt ggaccaccgt gaaccgcgta agtcttgccg gcaccgtgat
     2041 gggccccgat gaacgcctga cagcatacca ggcactgcaa accattacgg cctggggagc
     2101 ctggcagcat ggtgaagagg cgcaaaaggg aacacttacc gccggcaaat tggccgacct
     2161 cgttatcctc gatcaaaatc ctttgaagat tgatccgatg aagctgaagg acatcaaagt
     2221 ggtggagacc attaaggaag gaaaatctgt ttttaaaaga aattgacaga tctggtctac
     2281 atggaagccg ctttcatgga tcatcacttc actgcaagtt caacagcacc ttacacagct
     2341 tactctcatt ttgccgcagg tcgtctgcga aatcagcact gacctggcga gccggtagtc
     2401 atcctgctgc tcactccgca gccgtggtga aatcaaatcc aaaaatttta gggttgcaat
     2461 gaataagtgt atcccttacc ttcgtgttta accaaatggt taaaccgaat ggccaagatc
     2521 gttcaggaag tacaaaatgc ggaagagaaa atcctggcag cagcccgcaa agtgtttctg
     2581 cacaagggtt ataccggggc ccgtatgcag gaaatagccg atgaagcagg catcaacaaa
     2641 gctttgctcc attattattt ccgcagcaag gagaaattgt ttgaagagat tttccgtgaa
     2701 gcttttggca agttgttgcc cagcctggca ggcattttca aagagccaat cagcattttc
     2761 gaaaaaattg aacggtttac cgaagggtac atcaccgttg ttttggagca tccttacatc
     2821 ccggtatttg tattgagcga aatgcaccgc aacccggatg agttttttga aacctatgtg
     2881 cggcccgacc tgaggagcaa tgtgcagttg ataggaaagc agtttgcaga agccattacg
     2941 cagggcctca tccggcccac tgatccccgt cagctgatga tgaacatgat gagcctgtgt
     3001 gtttttccct ttgtggcccg ccccatgctg caacgcatga tacaggccag cgacaaaact
     3061 tatcattcgc tgttggagca gcgcaaaaaa gaagtgagtc aattcatcat cgcagccatt
     3121 aagccataat acgatactta tgcgaacaaa acatttctta ttcatcatgc tgctgtttgt
     3181 tgtaggccgc attcatgcgc aagccttgca gcaaatcagc ctgccacagg tgcaggaatg
     3241 ggcagccgat aattttccct tgctcaagca gaaagctttg gcccgccagg cagcactggc
     3301 caataacagc accctcagca acaacttcct gccgcaagtc agcctgggtg cacaagccac
     3361 ctggcaaagc gccgttaccg aagttccggt gcgcatcccc ggctttgcac cggaaccctt
     3421 gagcagggat cagtaccgcg ccacgctgga tgtgaaccaa ctggtatacg atggtggcct
     3481 gaacaagcag caaaaactga tgaatgaact acaggcactg ctgaaatctg aggaagtgaa
     3541 tatggggctg caacaactga aggacaggat caacaacctc tacgtaagta tcctgctgct
     3601 cgacaaacag cgccagcaga acgcactggt gctaaaagac ctggaagcca gcctggcgaa
     3661 agtagaagcc caggtgaaaa acggcaccgc ttatcgcagc aacctggcac tgctgcaatc
     3721 cgaaaaacta aaagcccggc aaaaagacat tgagctgcgc accgaccgtg agggtatgat
     3781 cgatgtactg tcgctgtata ccaaccaggc cattgcaccg caagccacgc tgtccacgcc
     3841 tgcggcaccc gggctttttg cagaagatga aatcacccgg ccggagctgc agtattataa
     3901 actccgcgac agcctggcgc agcagcagac agcgcttatc gacggaaggt tgcggcccag
     3961 catcagcctg tttgccaaca gcggctatgg cctgccggga ctcaacatgc tgaaaaatga
     4021 attcgccccc ttcatcacta cgggggtaag gctgcgctgg aacatcagtg gattttacag
     4081 cagcaaaaaa gaaagggaac tggccgacat cacccgacgt gatgtgcagg cgcaaaccga
     4141 gaatttttta ctcaacacca aatcgcaatt gcggcaacag caatccaaca tccaaaagct
     4201 gcggcaattg ctggaaaccg accaggaaat tgtgctattg aaaacacagg taaaagaagc
     4261 ggcagcagcc caactggaac atggcgttat tactgccagc gattacctgc gtgaagtaaa
     4321 tgccgaagac caggcccgac aaatgcaaat gctgcaccag ctgcaactgc tgcaggcttt
     4381 cctcacctat tcaaccatcg ccggaaaata gactaccatg acagccaaaa tttcttccct
     4441 cctactcatc gctgctgtgc tcagcctgac agcatgccgc aataatgact ttccttttga
     4501 tgcatcaggc acttttgagg ccgatgaagt gatcgtgtcc tctgaagtgg cgggcaaaat
     4561 cctttccatg gaattggaag aaggagatca attgaaaaaa gacagtatca cggttgtgat
     4621 tgatgccggc aacctggcgc tgcaaaaaga acaggtagaa gccagcatga tggcattgaa
     4681 agaaaaaaca tacgatgtca atccgcaact acaactgctg caagatcagt tgaaggtgca
     4741 ggaagcacaa atggaaacgc tgcaaaaaga acaacgccgt ttttcagccc tcgtgaaagc
     4801 ggatgccgcc acgcccaaac aactcgacga tatcaatgcg cagatagagg tattgcagca
     4861 gcaaatgctg gtgaccaggc aacaaatgaa agtacaggaa agcaacactg ccacgcaaaa
     4921 ccgcagtgta ctgagtgaaa cggatccgct ggccaaaaga gctgatatca ttgccgatca
     4981 gatcgaccga agcaaagtga tcaacccggt gaatggcacg gtgctcacca agtatgcgca
     5041 tgccggtgaa gtaataggcg ccggaaaagg cttgtacaag atagcagacc tctcctcttt
     5101 gttgctgcgg gcttatgtga ccggcgatca attgccacaa ataaaactgg ggcaggccgt
     5161 aaaagtgtat gtagacaaag gcaaaaaaga ttacaaggaa tacagcggca aaatcacctg
     5221 gattgccgac aaggccgaat tcacgccaaa gaccattcaa acgaaagaag aacgagccaa
     5281 cctcgtgtat gccatcaagg tattggtacc caacgatggc tatttgaaaa ttggacagta
     5341 cggcgaagtg aaatggagcc agtaaaagga agatcatcgg ctgattgaag cgaatacaca
     5401 tgttagcgat ccacgcagaa aatattacca aacgctaccc caacgggaag caatcgacca
     5461 cggcgctgca aaagctgtcg ctgcaggtgc agcaaggcga gttgtttggt ttgattggtc
     5521 ctgacggcgc cggcaaaacc tccctcatca ggatactcac taccctgctg ctgccggatg
     5581 aaggcactgc cagcgtggat ggacttgaca tacagaagga ttacagaaag atcaggcaaa
     5641 ggattggcta catgccggga aaattctcat tgtcccagga cctctcggtg caggaaaacc
     5701 tcgatttttt tgccaccatt ttcaatacca gcatccggga aaactatcac ctcatcaaag
     5761 acatttacga gcagatagaa cccttcaaac accgcaaggc cggcaagctg agcggcggca
     5821 tgaaacaaaa gctggccttg agttgcgccc tcattcacaa accgtctgtt ttgtttttgg
     5881 atgagcccac caccggtgtg gatgccgtga gccgcaaaga attctggcac atgctgcaac
     5941 agctgaaagc agaagggctc accatactgg tgtccacgcc gtacatggac gaagcctcgc
     6001 tttgcgaccg cgtagcactc atgcaggaag gacgcttcct ggagattgat acgcctgctg
     6061 acatcattga acggcatccc aaaaaagtgt gggccatcaa aagcgccaac atgtatggcc
     6121 tgctgaagca cctgcgccag ttgccagaga tcgattctgt ttatcctttt ggagaattcc
     6181 atcatttcac cttgcgtgaa aacgaaatgg aagcgccgct gcagcgtttg caaccgccca
     6241 atgaaaaagt ggaactgctc agcatccaac ccaatattga agacgtattc atgcacctga
     6301 tgcacaatca tgattgatca ttcacaacat atcatcacag ccgacaggct taccaaaacc
     6361 tttggcgatt tcattgctgt ggatgccatc agttttgaag tgagccgtgg tgaagtattt
     6421 ggtttcctcg gggccaatgg cgccggtaaa accactgcta tgcgcatgtt gtgtggcttg
     6481 ctggcaccca cttcgggcaa agccaccgta gcaggatttg atgtatacca gcagtcggaa
     6541 aaaataaaac agaacatcgg ctacatgagc cagaagtttt cgctgtacga agacctgacc
     6601 gtgaaagaaa acatgcgatt gtatggcggc atttatggca tgagcaccaa agccatcaaa
     6661 gagaaaaccg cacaaatagt ggaagaactg cacctccaga aagaacaaaa cacattggtg
     6721 cgttcgctgc cgttgggatg gaaacaaaaa ctcgctttca ctgttgccat ttttcacaac
     6781 ccgccgttgg tgtttctcga tgaacctacg ggcggcgtcg atccgatcac ccgtcgtgag
     6841 ttctgggaaa tgatctacca ggctgcggca caaaacacca cggtgtttgt gaccactcac
     6901 tacatggatg aagccgaata ctgcgaccgg gtgtgcatta tggtggacgg caagattgaa
     6961 gcacttgaca agcccgccct cctgcgccag caatttgagg cagactcaat ggatggcgtg
     7021 ttcttacaac tggcccgcaa agccaaacgg atgggagatt gatggaatgg ggaattggga
     7081 atgaggaatt aggaatgatg atttaggaat gatgaattag gaattgggat ttaggaattg
     7141 ggtgaagcaa tagcaataca tgacatgaca taacaaacaa caaataaatc agacatcaga
     7201 aatcagacat ctcacagcag acatctcact tcagccatca aaaaatcaac cagatgttat
     7261 cacaattctt ctcgttcgta aaaaaagaaa cgctgcatat atggcgcgac aaaagaaccc
     7321 tgttcatttt gtttggcatg cccatcgtgc aaatcacgct tttcggtttc gcccttacca
     7381 acgaagtgaa
//
LOCUS       DATIQF010000662         1898 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_101504,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000662 DATIQF010000000
VERSION     DATIQF010000662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101504"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..560)
                     /locus_tag="VLL95_11225"
     CDS             complement(<1..560)
                     /locus_tag="VLL95_11225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39476.1"
                     /translation="MKRFILATTLLAFTGTLFAQQKKSKKTELAPQEKICETLSCCQS
                     PADDNGVDANFMSVATTKDFGSMHQEPLPFVLEDQKGSMITYACADGKSANAYEIKAS
                     SATNNYLIVIQEWWGLNDHIKKEAEKFYTALDGKVNVLAVDLYDGKVAATVDSAQKFI
                     REALSSNRKETILKGAISHAGPKANV"
     gene            complement(606..944)
                     /locus_tag="VLL95_11230"
     CDS             complement(606..944)
                     /locus_tag="VLL95_11230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39477.1"
                     /translation="MVQFASLEPGRFHLIQLTPDGKPELVYVLMASETSLLLEFESAT
                     KERAWFRKSDSFFELIETFSDEAASLYQMITKPQPDSDLPDWAAEDDEEDFNRFWSNQ
                     ENDPDLPFMN"
     gene            1208..>1898
                     /locus_tag="VLL95_11235"
     CDS             1208..>1898
                     /locus_tag="VLL95_11235"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF003792.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HSR39478.1"
                     /translation="MAKYIFVTGGVTSSLGKGIIAASLAKLLQARGLKVTIQKFDPYI
                     NVDPGTLNPYEHGECYVTDDGAETDLDLGHYERFLNIATSQANNVTTGRIYQTVINKE
                     REGAFLGKTVQVVPHITDEIKRRMLLLGESGLYDIVITEIGGTVGDIESLPFIEAVRQ
                     LQWELPEEDCLVVHLTLIPYLRAAKELKTKPTQHSVKMLSQEGVHPDIIVCRTEKPLS
                     YELRRKIALFCN"
BASE COUNT          446 a          463 c          488 g          501 t
ORIGIN      
        1 tatacattgg ctttgggacc agcatgactg atggctcctt tcaagatggt ttctttccgg
       61 ttgctgctga gtgcttcgcg gatgaacttc tgggcactgt ctaccgtggc ggctacttta
      121 ccatcgtata aatccaccgc cagcacattc acttttccat caagagcagt ataaaatttt
      181 tccgcttctt ttttgatgtg gtcattcaat ccccaccatt cctggatcac gatcaggtaa
      241 ttattggtgg cgctgctggc ttttatttca tacgcattgg ctgatttgcc atcggcacag
      301 gcataggtga tcatgctgcc tttctggtct tcgagcacaa agggcagcgg ctcctggtgc
      361 atgctgccaa agtctttggt agtggccacg gacataaagt tggcatccac cccattgtca
      421 tcagccggcg attggcagca ggagagggtt tcgcaaattt tttcctgtgg ggccagttcg
      481 gttttttttg attttttctg ttgggcgaag agggtccccg tgaaggccag cagggtagtg
      541 gcaagaataa agcgcttcat aatagatgga tttgatacag gcaaagaaaa cagccgcctg
      601 ctgtattagt tcataaaagg aaggtcagga tcgttttcct ggttgctcca aaacctgttg
      661 aagtcttcct catcgtcctc agccgcccaa tcgggcaggt cactgtctgg ctggggtttg
      721 gtgatcattt ggtaaagcga tgccgcctcg tccgaaaaag tttcgatcag ttcgaaaaag
      781 gaatcgcttt tgcgaaacca ggctctttct ttcgtagcgc tttcaaattc aagcagcagg
      841 ctggtttcgg aggccatgag cacgtatacc agttccggct ttccgtcggg cgtcagttgg
      901 atcaggtgaa acctgccggg ttcaagagag gcaaactgta ccatacagtc attttttaca
      961 atttcgggtt ttttacaatg gattccccgg aagtttttcc aaaatcagaa acccacattt
     1021 tccacacagc tttggtcgaa gcccggtggc cattttttgg cgccgtatcg gaatgctgta
     1081 tgtttgcatg accagtaatt tttccaacgg tcaagtttgt tagtttttaa agcgaaaccc
     1141 acacttcgca tctctttgtt taggatcatt cgtaagggag cgaacagtgc gggtaaattt
     1201 ttttgttatg gcgaagtaca tatttgttac aggaggtgtg acctcatcat tgggtaaagg
     1261 aattattgct gccagcctgg ccaaactgtt gcaggcccgt ggcttgaaag tgaccatcca
     1321 gaaattcgat ccctacatca acgtggaccc gggtacgctg aacccttacg agcatggcga
     1381 atgctatgtg accgatgatg gcgccgaaac cgacctcgac cttgggcact acgaacgctt
     1441 cctgaacatt gctaccagcc aggccaacaa cgtgaccacc ggccgcattt accaaaccgt
     1501 gatcaacaag gaaagggaag gcgccttttt gggaaaaacg gtgcaggttg tgccccacat
     1561 taccgacgag atcaagcgcc ggatgctgtt gctgggcgaa tcaggattgt acgacatcgt
     1621 gatcactgaa ataggtggca ccgtgggcga tatcgaaagc ctgcccttta ttgaagcggt
     1681 acgccaactg cagtgggaac tgcccgaaga agactgcctg gtggtgcatc ttaccctgat
     1741 cccgtacctg cgggctgcca aagaactcaa gaccaagcct acgcagcaca gcgtgaaaat
     1801 gctgagccag gaaggcgtgc atcccgatat catcgtatgt cgtacggaaa agccgttgag
     1861 ctacgagctg cgccgcaaga ttgccctgtt ctgcaacg
//
LOCUS       DATIQF010000663         5507 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_71275, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000663 DATIQF010000000
VERSION     DATIQF010000663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5507
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71275"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            202..420
                     /gene="infA"
                     /locus_tag="VLL95_11240"
     CDS             202..420
                     /gene="infA"
                     /locus_tag="VLL95_11240"
                     /inference="COORDINATES: protein motif:HMM:TIGR00008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HSR39479.1"
                     /translation="MSKQSLIKQDGIIVEALSNAMFKVRLENGHEILCTISGKMRMHY
                     IRILPGDKVGVEMSPYDLTRGRIIFRYK"
     gene            492..608
                     /gene="ykgO"
                     /locus_tag="VLL95_11245"
     CDS             492..608
                     /gene="ykgO"
                     /locus_tag="VLL95_11245"
                     /inference="COORDINATES: protein motif:HMM:TIGR01022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HSR39480.1"
                     /translation="MKVRASVKKRSADCKIVRRKGKLYIINKKNPRYKQRQG"
     gene            658..1038
                     /gene="rpsM"
                     /locus_tag="VLL95_11250"
     CDS             658..1038
                     /gene="rpsM"
                     /locus_tag="VLL95_11250"
                     /inference="COORDINATES: protein motif:HMM:TIGR03631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HSR39481.1"
                     /translation="MARIAGIDLPKNKRGEIGLTYIYGIGRSTAQYILNKAEIDFNKK
                     VSAWNDDELTAIRNIINEEIKVEGALRSEVSMNIKRLMDIACYRGLRHRKGLPVRGQR
                     TRTNSRTRKGKRKTVAGKKKAPKK"
     gene            1191..1595
                     /gene="rpsK"
                     /locus_tag="VLL95_11255"
     CDS             1191..1595
                     /gene="rpsK"
                     /locus_tag="VLL95_11255"
                     /inference="COORDINATES: protein motif:HMM:NF003698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HSR39482.1"
                     /translation="MAKQQQLSAKAAAKKRVVKVDVAGDVHVNATFNNIIISITNKQG
                     QVISWSSAGKMGFKGSKKNTPYAAQVAAADAARVALEAGMKRADVYVKGPGSGREGAI
                     RSISQSGIEVTSIKDVTPLPHNGCRPPKKRRV"
     gene            1735..2340
                     /gene="rpsD"
                     /locus_tag="VLL95_11260"
     CDS             1735..2340
                     /gene="rpsD"
                     /locus_tag="VLL95_11260"
                     /inference="COORDINATES: protein motif:HMM:NF003717.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HSR39483.1"
                     /translation="MARYTGPKTKISRIFGEPILGNGKYLGKNSNPPGQHGAARKRKQ
                     LGEYAMQLKEKQKAKYTYGLLERQFYKTFVEAARRKGVTGENLIKLLEARLDNTVFRL
                     GIAPSRPAARQLVSHKHVCVNGEVVNIPSYQMKPGDVITLAPKTAANTAVTSHIRGKN
                     AKFSWLDWNEGEQKGTFIAYPERESVPENIREQLIVELYSK"
     gene            2431..3432
                     /locus_tag="VLL95_11265"
     CDS             2431..3432
                     /locus_tag="VLL95_11265"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF003516.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HSR39484.1"
                     /translation="MAILSFQKPDKIILHKATDFEAQFEFRPLEPGYGLTVGNALRRV
                     LLSSLEGYAITGIRIEGADHEFATIKGISEDVTEIILNLKQVRFKKTTDNDVQQEKIM
                     LSLKNKSQFTAGMVGEVLQNFEVMNPDLVICTMDPSAKLDIEIHIGKGRGYVPAEENK
                     IKDAPFGFIPVDSIFTPIKNVKYSVENTRVEQRTDYEKLMMEVVTDGTIHPEEAVKQA
                     SRILIQHLMIITDENITFDTKEEKKEDLVDESTLQLRKILKTPLEDLDLSVRAFNCLK
                     AAKINSLSELVQYEQEDLMKFRNFGQKSLSEIEQVLGERGLHFGMDLAKLGIDAEEL"
     gene            3538..4080
                     /gene="rplQ"
                     /locus_tag="VLL95_11270"
     CDS             3538..4080
                     /gene="rplQ"
                     /locus_tag="VLL95_11270"
                     /inference="COORDINATES: protein motif:HMM:TIGR00059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005762 - mitochondrial large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HSR39485.1"
                     /translation="MRHGDKINNLGRKKAHRVALLRNLATELIMHKRIVTTLSKAKAL
                     RAFVEPLITKTKKNSSELQIMNQHRVVFSALNNKFAVKELFTVVGPKVSDRPGGYTRI
                     IKLGTRPGDASEMAMIELVDFNEVYGKAAQKAAEPAKRTRRGSKKKAEAAETAAPAAE
                     VAEEVKAEEAAPSTEEKAAE"
     gene            4160..4624
                     /locus_tag="VLL95_11275"
     CDS             4160..4624
                     /locus_tag="VLL95_11275"
                     /inference="COORDINATES: protein motif:HMM:NF025454.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4268 domain-containing protein"
                     /protein_id="HSR39486.1"
                     /translation="MYSRQEASRIKTAFWTSFGQYMKPIPSAWKDKVNWLNYKTGIKD
                     IFFRMHADNKQASIGIELTHHDAIIRHYAFEKMQLLKPLLEEASGEEWDWQLERFDEH
                     GRAISVISISLPHVSIMRQEDWPALISFFKPRIIALDAFWSDAKDIIEMQLQ"
     gene            complement(4627..>5507)
                     /locus_tag="VLL95_11280"
     CDS             complement(4627..>5507)
                     /locus_tag="VLL95_11280"
                     /inference="COORDINATES: protein motif:HMM:NF019365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015926 - glucosidase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyl hydrolase 53 family protein"
                     /protein_id="HSR39487.1"
                     /translation="GGKYYSNLPDVEQTIRRAKAQGMAVNLDIHYSDTWADPDHQDIP
                     ATWKGLPLNTLADSVYNYTLATLQYLGAKNLAPEMVQVGNETNSGMLWPTGKTTTGWN
                     GFATLLKAGIKAVRDFSNTSAIKPRIILHVAQLQTASNWAQQLQANGVTDYDVLGLSH
                     YYKWTTVHDFSAITQGIANLRTISGKDVMVVETAFPFTNNNADSYNNIFWESTGTAEG
                     FPFSPKGQYEYYKALTKAIIAGGGKGIMVWEPAWVSSRLNDGWGIGSSWENNAFFEFD
                     GNLHQGIQFMTFDYGL"
BASE COUNT         1570 a         1266 c         1326 g         1345 t
ORIGIN      
        1 gactatatac ctaatttggc ttaaataata agaaagctga acatcggagg agaattaagg
       61 agtgtaactg gtccaaatga ctcggtttcg agtccaaaaa ggggccattt cccacatttt
      121 ttggctattt gttggaaaat gatttgacac tggttgccat tgtgtgttga aaacttctat
      181 ctttgcgctc ccaaaatcta tatgtcgaag caatcactca ttaaacagga tggaattatt
      241 gtagaagcat tatccaatgc catgttcaaa gtaagactgg aaaacgggca tgaaattctc
      301 tgcaccatct ctgggaaaat gaggatgcac tacatccgga tccttccggg cgacaaggta
      361 ggggtggaaa tgagtccata cgacctcaca cgtggaagaa tcattttcag gtataaataa
      421 taaatagtat gcgctgcgaa gctttgaggc cgggcagcca aagtttttga accaagtaaa
      481 ctatttgaac gatgaaagtt cgtgcatcag taaaaaagcg tagcgcagac tgcaaaattg
      541 tacgtcgcaa aggaaagctg tacatcatca acaagaagaa tcctcgctat aagcagcgcc
      601 agggttaatt catccgcagc accaaacaaa atatcaaaaa cgtaaacaga taatctcatg
      661 gctcgtattg ccggtataga tcttcccaaa aacaagcgtg gcgaaatagg ccttacctac
      721 atttatggta tcggtcgtag cactgctcag tacatcctga ataaggctga aattgacttc
      781 aacaagaaag tgagcgcctg gaatgacgac gaactcactg ctattcgtaa catcatcaac
      841 gaagagatca aggttgaagg tgcgctgcgt agcgaagtgt caatgaacat caagcgtttg
      901 atggatatcg cctgctaccg tggtctccgc caccgtaaag gtctgccagt gcgtggtcag
      961 cgtacccgta ccaacagccg tacacgtaag ggcaagcgta agactgtagc cggtaagaag
     1021 aaggctccta agaagtaata aatagtcgtg ggtgcgttgc ataaacgtgc tcacgatttt
     1081 ttataaaaac ccggcaaatt ctggatcttc tgcctggcag aagggaggaa aatccggttc
     1141 ccgatcttat tcgggattta ttatttaaca agattacctc caaacaaaca atggcaaaac
     1201 aacaacaatt gagcgccaaa gctgccgcta aaaagcgtgt agtgaaggta gatgtggccg
     1261 gcgatgtgca tgtaaacgcc acattcaaca acatcatcat cagcattacc aacaagcagg
     1321 gccaggttat cagctggtca agcgctggta aaatgggctt caagggtagc aagaagaata
     1381 ctccttatgc tgcccaggta gctgctgctg acgctgcccg tgtagcttta gaagctggca
     1441 tgaagcgtgc agatgtatac gtgaaaggac ctggtagcgg ccgtgaaggt gctatccgtt
     1501 ctatttctca aagcggtatt gaagtgactt ctatcaagga tgtgaccccg ctgcctcaca
     1561 atggctgccg tcctcccaag aagcgtcgcg tataaaatat tcccgcaact ccaatgggag
     1621 ctaagggaac tgagccaact aggtttcatt tacacaaagg gtgcccgatt aattttttac
     1681 gattttttac tgatcgtagc accggtttca aaaaaatcga aatgaaaaaa cactatggca
     1741 cgttacactg gtcctaagac caaaatcagc cgcattttcg gcgagcccat cctgggcaat
     1801 ggcaagtatt tgggtaaaaa cagtaatcct cccggtcagc acggagcagc ccgcaagcgc
     1861 aagcagttgg gtgaatatgc catgcagctg aaggaaaagc agaaagcaaa atacacttac
     1921 ggtttgctgg agcgtcagtt ctacaagact ttcgtggaag ctgcccgtcg taagggtgta
     1981 acaggtgaaa acctgatcaa attgctggaa gcccgcctgg acaacactgt ttttcgtttg
     2041 ggaatcgctc ccagtcgccc cgcagcacgc cagctggtta gccataagca cgtttgtgta
     2101 aatggtgaag tcgtaaacat tccttcttac caaatgaagc ccggtgatgt gatcaccctg
     2161 gctcctaaaa ctgctgctaa cacagcggtt accagccata tccgtggtaa gaatgcgaag
     2221 tttagctggc tcgactggaa tgaaggtgag caaaaaggca ctttcattgc atatcctgaa
     2281 agggagagcg ttcctgagaa catcagggaa caactgatcg tagaattgta cagcaagtaa
     2341 tatttccaac cgccggtttt actactggcg gtttggtttg tttctgcaac acagttcttt
     2401 tcattagtca aatcctcgta aacaaatact atggccattt taagtttcca aaagcctgac
     2461 aaaatcattc tgcacaaggc aactgatttt gaagcacaat tcgaattccg tccgctggag
     2521 cccggttatg gtcttacagt gggtaatgcg cttcgtcgtg tactgcttag ctcactcgaa
     2581 ggctacgcta tcaccggcat tcgcattgaa ggcgccgatc acgaatttgc caccatcaag
     2641 ggcatttctg aagacgtaac cgagatcatc ctcaacctga agcaggttcg tttcaagaag
     2701 actactgaca acgatgttca gcaggagaag atcatgctga gcctcaagaa taaatcacag
     2761 ttcactgcag gtatggttgg tgaagtgctt caaaactttg aagtaatgaa ccctgacctg
     2821 gtgatctgca ctatggatcc ttcagccaag ctggacatcg aaatccacat tggcaaaggc
     2881 cgcggatacg tgcctgctga agaaaataag atcaaggatg cgccgtttgg tttcatccct
     2941 gttgattcta ttttcactcc cattaagaac gtaaagtaca gtgttgaaaa cacccgtgtt
     3001 gagcagcgta ctgactacga aaaactgatg atggaagtag tgactgatgg tactatccat
     3061 cctgaagaag cggtgaagca agccagccgc atcctgatcc agcacctgat gatcatcacc
     3121 gacgagaaca tcacctttga tacaaaagaa gagaagaaag aagacctcgt tgatgaatca
     3181 acactgcagc tgcgcaagat cctgaagact ccgctggaag acctcgatct gagtgttcgt
     3241 gctttcaact gtctgaaggc cgccaagatc aacagcctga gcgaactggt tcaatacgag
     3301 caggaagacc tgatgaagtt ccgcaacttc ggtcagaaga gcctaagcga aattgagcag
     3361 gtgttgggcg aacgtggtct gcacttcgga atggacctcg ccaaactggg aattgacgct
     3421 gaagagctgt aagctttacc gcgtttttct ataaacattt ctaaaccgca acgaagcctg
     3481 gcttccgagc aaacatcaca ttccttgaca cggtgtgatg attaaaaact aaatgtcatg
     3541 cgtcacggag acaaaatcaa caacctgggt cgtaagaagg cccaccgcgt agccctgctt
     3601 cgcaaccttg caactgagtt gatcatgcac aagcgtatcg taaccacatt gtccaaagcc
     3661 aaggcgttgc gtgcttttgt tgagccgctc atcaccaaga ccaagaagaa cagcagcgag
     3721 ctgcaaatta tgaaccagca ccgcgttgtg ttcagcgccc tcaacaacaa atttgctgtg
     3781 aaggaactgt tcaccgttgt aggtcctaaa gtttctgacc gtcccggtgg atacacccgt
     3841 atcatcaagc tgggaacccg ccctggtgat gcttctgaaa tggccatgat cgaattggtt
     3901 gatttcaacg aagtatacgg taaagccgcc caaaaagccg ctgaaccagc caagcgtacc
     3961 cgtcgtggta gcaagaagaa agctgaagct gctgaaactg ccgcacctgc tgctgaagta
     4021 gcagaagaag tgaaagctga agaagctgct ccttcaaccg aagaaaaagc cgctgagtaa
     4081 ttcagttaca tattttcttt agcagagccc ggctttttgc cgggctttgt ttttatggag
     4141 taatcgtcaa tttgcaggta tgtattcgag gcaggaagca tcacgtataa aaacagcctt
     4201 ctggacaagc tttggccagt acatgaaacc catccccagc gcatggaagg ataaagtgaa
     4261 ctggctgaat tataagactg ggatcaaaga catatttttt cggatgcatg ccgataacaa
     4321 gcaggcgtca atcggcattg agctaaccca tcatgatgcg atcatacgcc attatgcttt
     4381 tgagaagatg caattgctga aacctctgtt ggaagaggcc agcggagagg aatgggactg
     4441 gcagttggaa cggtttgatg aacatggcag ggccatcagc gtcatttcca tttcactgcc
     4501 acacgtaagc atcatgcgac aggaagattg gcctgccttg atctcgtttt ttaaacctcg
     4561 cattattgca ttagatgcct tttggtcgga tgcaaaagac atcattgaaa tgcaactgca
     4621 atgaattcag agaccataat caaaggtcat gaattgaatg ccctggtgga ggttgccatc
     4681 gaactcaaaa aaggcattgt tttcccaact gctgccgatt ccccaaccat cattcaagcg
     4741 agaactgacc caggccggct cccaaaccat gatgcctttg ccgcccccgg caatgatggc
     4801 ttttgtaagg gctttatagt attcatattg ccctttgggg gaaaacggaa atccttcggc
     4861 cgtgccagtt gattcccaga aaatattgtt gtagctgtca gcattattgt ttgtaaaggg
     4921 gaaggctgtt tccactacca taacatcttt gccggaaatt gttctgaggt tggcgatgcc
     4981 ttgtgttatg gctgagaaat catgtaccgt tgtccatttg taatagtggg ataagcccag
     5041 cacatcataa tcggtaacac catttgcctg taactgctgt gcccagttag aagcggtttg
     5101 caattgggcc acatgaagaa tgatcctggg tttgatggcc gatgtgttgc tgaaatcccg
     5161 aacagccttg atgccagcct tgagcaaggt ggcaaaacca ttccaaccgg tggtggtttt
     5221 tccagtgggc caaagcatgc cactattggt ttcgtttcct acctgcacca tttctggggc
     5281 caggttttta gcaccaagat actgtagcgt cgccagggta taattgtaca ctgaatctgc
     5341 cagtgtgttg agtggcagcc ctttccaagt cgcagggatg tcctggtgat ccgggtcggc
     5401 ccaggtatcg gaatagtgga tgtcaaggtt taccgccatg ccttgcgctt tggcacggcg
     5461 aatggtttgt tccacatccg gcaggttgct gtaatacttt ccgccat
//
LOCUS       DATIQF010000664         2988 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_101570,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000664 DATIQF010000000
VERSION     DATIQF010000664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101570"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(59..1114)
                     /locus_tag="VLL95_11285"
     CDS             complement(59..1114)
                     /locus_tag="VLL95_11285"
                     /EC_number="5.1.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF010578.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyproline epimerase"
                     /protein_id="HSR39488.1"
                     /translation="MAQSPLILDSSLPLPSHDGVSVFQCIDAHTCGNPVRLVYSGGPA
                     LEGNTMSEKRQHFLREYDWIRKGLMFEPRGHDMMSGSILYPPHDPQNDVAVLFIETSG
                     CLPMCGHGTIGTITIAIESGLLKPKQPGVVRMEAPAGLVMVEYTQEGSKVKSVKLTNV
                     ASFLHSTELTAECPELGELVLDVSYGGNFYAIVDVQKNFKGLEHYSADKLIAWARELR
                     KNINAKYEFIHPDNPTINGCSHVLWTGAVLDPASTARNAVFYGDKAIDRSPCGTGTSA
                     RMAQWYAKGQLKKGDEFVHESIIGSKFIGRIEEETNVHGSPAIRPNIEGWARIYSYNN
                     IWIDPVDDPYAFGFQVI"
     gene            complement(1121..>2988)
                     /locus_tag="VLL95_11290"
     CDS             complement(1121..>2988)
                     /locus_tag="VLL95_11290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39489.1"
                     /translation="SGSINLGDWTGVGGCESGFAQPDPLDPNIVWSGCYDGGLDVFDL
                     RTGHARDVRAWPQAGYGYAPADMKYRWHWNYPIVVSKHEKGKVYIGSQYVHATSNGGQ
                     SWDVISPDLTSNDKSHQQSSGGINADNLMTFDGCTLYWLEESPVKAGVLWAGSNDGLI
                     HLTTDGGKTWKKVSDGLTGVPKWSTVRCIEASPFDAGTAYVVMNAYQLGDFKPYIFKT
                     TDYGNTWKKISEGIPASNSSHVHQVLEDPGKKGLLWAGTDNDLYFSPDDGGHWVMLKN
                     NLPPVPVYGLAMQANFNDLVVGTYGRGIYILDDVTPIRQLADLYASNQDVLLPIRKAY
                     RFRDKQGIHAERSFVTGQNAPYGASINFYLKEASKQPVKLLVTDASGKTVKTLEASGS
                     KGLNRVWWDLAYDEAVLPPLRTKPRGKDWVKLDSTGKRNMFIYDLDVGPGLAPPLVLP
                     GIYTVILQTGDQQLKQQVEVLKDPNTSASMQDVANQHAFAVQLYGSIRRCFELIDSLE
                     QKRALLLATVSANDKSKPMQQSASRMEEQLWQMESKLFDVYLTGSRQDAFRNPAQILE
                     RLLAISKESLQSSADYPPTDQQLAVFAELNAGLDNVEKQYSSFLQSAEWKSFNKK"
BASE COUNT          730 a          804 c          669 g          785 t
ORIGIN      
        1 agagagaatc aataatacta tccagcaaat cttagctttc atttgaaagg aaatcaaatt
       61 aaatgacctg gaatccaaat gcatatggat catcaaccgg gtcaatccaa atgttattgt
      121 aactatatat ccttgcccag ccttcaatat tgggtcggat ggccggactg ccatgcacat
      181 tcgtttcttc ttcaatgcgg ccgatgaact tactgccaat aatgctttcg tgtacaaact
      241 catccccctt tttcagttgg cctttggcat accactgcgc catgcgggct gaggtgccgg
      301 tgccgcaagg agagcgatcg atggctttgt cgccataaaa aaccgcgttg cgggctgtgc
      361 tggcaggatc aagtactgca ccagtccaca atacgtggct gcaaccattg atggttggat
      421 tatcagggtg gataaactcg tatttggcat tgatgttttt ccgcaactca cgggcccagg
      481 cgattagttt gtcggcactg taatgctcga ggcctttgaa gttcttctga acatctacga
      541 tcgcatagaa attgccacca taagaaacat ccaacaccag ttcacccaac tcaggacatt
      601 cggccgtcaa ttcggtgctg tgcagaaaag aagccacatt ggtcagtttc acagatttta
      661 ctttgctgcc ttcctgcgta tactccacca tcaccagtcc ggcaggtgct tccatccgta
      721 ccacacctgg ctgtttgggt ttgagcaagc ccgattcaat ggcaatggta atggtgccga
      781 tcgtgccatg cccgcacatc ggaagacatc cgctggtttc aataaacaac acggccacat
      841 cattctgcgg atcatgtggc ggataaagaa tactgccact catcatgtcg tgtcctcggg
      901 gctcaaacat gaggccttta cgtatccagt cgtattcacg caggaaatgt tgccgcttct
      961 cactcatcgt attcccttcc aacgctgggc cgccgctgta tacaaggcgc acagggttgc
     1021 cgcaggtgtg cgcatctata cactggaaaa cagaaacccc atcatgtgaa ggcaatggca
     1081 aactgctgtc taatatcaat ggcgattgtg ccatgttgca ttatttttta ttgaatgatt
     1141 tccattcagc tgattgcaaa aatgaactgt actgtttctc tacattatcc agccccgcat
     1201 tcaattcggc aaacacagcc agttgctgat cggtaggcgg ataatctgca ctgctttgca
     1261 ggctttcttt tgaaatggca agcagtctct ccaggatttg tgccgggttg cggaaagcat
     1321 cctggcgtga accggtgagg tatacatcaa acagcttaga ctccatttgc cacaattgct
     1381 cctccatcct tgatgccgat tgctgcattg gcttcgactt gtcattggct gaaacagtgg
     1441 ccagcagcaa ggcccgcttt tgctccaagc tgtcaattaa ttcgaaacaa cggcggatgc
     1501 tgccatacaa ctgcacggca aatgcatgtt gattggctac atcctgcatg gaagcagaag
     1561 tattgggatc tttcaacact tccacctgtt gcttcaattg ctgatcacct gtttgcagga
     1621 tgactgtata aatgccaggc aacaccaaag gaggggcgag acccgggcct acatccagat
     1681 cgtagataaa catgttacgt ttgcctgttg aatccagttt cacccaatct tttccacggg
     1741 gtttggtgcg caaaggaggc aacactgctt catcataagc caaatcccac catacacggt
     1801 tgagaccttt gctgccactg gcttccagcg ttttcaccgt cttgccagac gcatctgtta
     1861 ccagcaattt caccggttgc ttgctggcct ctttcaaata gaaattgatg ctggcaccat
     1921 aaggtgcatt ctgcccggtt acaaaactcc gctccgcatg aatgccttgt ttgtctctga
     1981 agcggtaggc tttcctgatg ggcaacaaaa catcctggtt gcttgcatac aaatcggcca
     2041 gttgacgtat gggtgtcaca tcatctagga tgtaaatgcc ccggccataa gtacccacca
     2101 ccaggtcatt gaaatttgcc tgcatggcca gcccgtatac gggcaccggg ggcaaattgt
     2161 ttttcagcat cacccagtgg cctccatcat ccggcgagaa atacaaatca ttgtcggttc
     2221 ctgcccacag caaacctttt ttacccggat cttccaacac ctggtgcaca tgcgatgaat
     2281 tggaagccgg aatgccttca ctgatctttt tccaggtatt gccgtagtcg gttgttttga
     2341 aaatgtaggg cttgaaatca cccaactggt aagcattcat cactacgtag gcggttccag
     2401 catcgaaggg tgatgcttca atacaacgca ccgtgctcca cttgggaaca cctgtcaaac
     2461 catcgctcac ctttttccag gtttttccgc catctgtggt caggtgtatc aatccatcat
     2521 tgctacctgc ccacaatacg ccggctttta ccggcgattc ttccagccaa tacaacgtac
     2581 atccatcaaa ggtcatgagg ttatcggcat tgatgccacc agagctttgc tgatgcgact
     2641 tgtcgttgct ggtaagatca gggctgatga catcccaact ttgtccgcca ttgctggtag
     2701 catgcacata ctggctgccg atgtatactt ttcccttttc gtgctttgaa actacgatag
     2761 ggtaattcca atgccagcga tacttcatat ctgcaggggc gtatccatac cccgcctgtg
     2821 gccatgcacg cacatcacgg gcatgaccgg tgcgcaggtc aaatacatca agaccaccat
     2881 cgtagcagcc actccacaca atattcggat ccaatggatc cggttgggca aagccacttt
     2941 cacatccacc caccccggtc caatcaccaa ggttgatgct gccgctca
//
LOCUS       DATIQF010000665         3169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_223520,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000665 DATIQF010000000
VERSION     DATIQF010000665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3169
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223520"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..318
                     /locus_tag="VLL95_11295"
     CDS             <1..318
                     /locus_tag="VLL95_11295"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HSR39490.1"
                     /translation="FALQDEAFDRSQGLHSIPAALCTAKALRVSELLHLLSAACVIAA
                     GFYGHFGWWYWIGTAGFCGMLVYQHSIVKPTDLSRVNIAFMTANGIASVLFAVFVIAD
                     LFL"
     gene            347..757
                     /gene="ruvX"
                     /locus_tag="VLL95_11300"
     CDS             347..757
                     /gene="ruvX"
                     /locus_tag="VLL95_11300"
                     /inference="COORDINATES: protein motif:HMM:NF015607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HSR39491.1"
                     /translation="MGRILAIDYGKKRTGIAATDPLQIIANGLTTVDTHMLRNFLKDY
                     CTKEEVERVIIGLPKNLDDSDTDATKPVKDFILLFRKDHPAIPIETVDERYTSKMAVQ
                     ALLESGVKKKDRQDKKRIDEMAATIMLQEYLQNR"
     gene            796..1374
                     /gene="def"
                     /locus_tag="VLL95_11305"
     CDS             796..1374
                     /gene="def"
                     /locus_tag="VLL95_11305"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: protein motif:HMM:NF001159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HSR39492.1"
                     /translation="MTLPIVAYGSPVLRAVAVDIAPDYPNLGQLIADMWETMYASNGV
                     GLAAPQINRSVRLFVVDSQQIIEHLDEEERAEFEGDEGIKETFINARILNYEGDEWPY
                     NEGCLSIPKVREDVYRPETITIAYVNENFEPQHKTFSGITASVIQHEYDHIEGKLFID
                     YLSPLKRKLLKGKLLDISKGKIRMDYRMTYPK"
     gene            complement(1436..2497)
                     /locus_tag="VLL95_11310"
     CDS             complement(1436..2497)
                     /locus_tag="VLL95_11310"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HSR39493.1"
                     /translation="MLDEELNLPDEGNESDELYKRLVVKADKGQEPLRIDKFLMNRIE
                     GATRNKIQQALHAGLITVDGNPVKPNFKVKAGHEIVVFSEEHPDSTDIIPEPMDLNIV
                     YEDDDVLLINKPAGLVVHPGSGNPKGTLVNGVAHYLLQQNPELTEFNLPRFGLVHRID
                     KNTSGLLLMAKTDRALQHLAKQFFNHTIERKYVALVWGDVENEEGTIEAHVGRSPRYR
                     KQFEAFPEGEHGKHAITHYKVLERFHYVTLVECELETGRTHQIRVHMKYIGHTLFADD
                     HYGGDRILKGTIYTKYKQFVENCFALCPRQALHAKTLGFVHPVTNQHMFFEASIPEDM
                     SAVIDKWRRYYQAKGKIEE"
     gene            2556..>3169
                     /gene="lipB"
                     /locus_tag="VLL95_11315"
     CDS             2556..>3169
                     /gene="lipB"
                     /locus_tag="VLL95_11315"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: protein motif:HMM:NF010925.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033819 - lipoyl(octanoyl) transferase
                     activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HSR39494.1"
                     /translation="MSSQQIVRWKDMGLQRYKPVWDYQEQLMQQATDTKRAEFEWPAA
                     ERSTRHYLLLVEHPPVYTLGKSGHLENILITEEEMTARGIDYFKINRGGDITFHGPQQ
                     LVGYPILDLEKFYTDIGKYLRNLEEVIIKTIAHYGLKGERSSGETGVWIDPDKKGSER
                     KICAMGVRCSRWITMHGWALNVNTDLDYFSHIIPCGIKDKQVTS"
BASE COUNT          797 a          786 c          815 g          771 t
ORIGIN      
        1 tttgccctgc aggatgaagc cttcgatcgc agccagggac tccacagtat tccggccgcg
       61 ttgtgcacgg ccaaagcgct cagggtaagc gaactcttgc acctgctgag tgcggcatgc
      121 gttattgctg caggttttta cgggcatttt ggatggtggt attggatagg caccgcagga
      181 ttttgcggca tgcttgttta ccagcacagc attgtaaagc caactgatct cagccgggta
      241 aacatcgcct ttatgacggc caatggcatc gccagcgtgc tgtttgcggt atttgtgatt
      301 gccgaccttt tcctgtaatt accataattc gtgacattcg tattctatgg ggcgcatcct
      361 ggctattgat tatggcaaaa aacgaaccgg cattgctgcc actgatccgt tgcagatcat
      421 tgccaatgga ctcacgacag tggataccca tatgttgcgc aacttcttga aagactactg
      481 caccaaagaa gaagtggagc gagtgatcat tggcctgcca aagaacctcg acgacagcga
      541 cacggacgca acaaagccag taaaagattt tattctgtta ttccggaagg accacccggc
      601 gattcccatt gaaaccgtgg atgagcgcta caccagtaaa atggcggtgc aggccctgct
      661 tgaaagcggc gttaaaaaga aggaccgcca ggacaagaag cggattgatg aaatggccgc
      721 caccatcatg ctgcaggagt atttgcaaaa ccgttagcac cgataccctg atatttgcaa
      781 aaattttttc cgaaagtgac tctaccaata gtagcatatg gatctccggt actgagagca
      841 gtggcagtgg atattgctcc cgattatccc aacctgggcc aattgattgc agatatgtgg
      901 gaaaccatgt acgccagtaa tggcgtgggg ttggcggcac cgcaaatcaa tcgcagcgtt
      961 cgtttgtttg tggtggacag ccagcagatc attgagcacc tcgacgagga ggaaagggca
     1021 gaatttgaag gggatgaagg catcaaagaa acattcatca atgcccggat cctcaactat
     1081 gaaggggatg aatggcctta caacgaaggc tgtctttcca tacccaaagt gcgggaagat
     1141 gtgtaccgac ccgagaccat caccatcgct tatgtgaacg aaaattttga accacagcat
     1201 aaaacgttca gcggcattac tgccagtgtg atccagcacg aatacgatca cattgaaggg
     1261 aaattgttca tcgattacct gtcgccgctg aagcggaaac tgctcaaagg caagttgctc
     1321 gacatctcga aaggcaagat ccgcatggat taccggatga cttatcccaa atagccaggg
     1381 aataaaaaaa gagcaccaaa accgggtgct cttttttgtt ttatggtgat gtcacttatt
     1441 cctcaatctt tcctttggcc tggtaatacc ggcgccattt gtcgatgacg gcgctcatgt
     1501 cttctggaat tgacgcctca aaaaacatat gctggttggt aaccgggtga acaaagccca
     1561 gtgttttggc atgcagggcc tgcctggggc agagggcaaa acaattttct acaaactgct
     1621 tgtatttggt ataaatagtg cctttcagga tcctgtcgcc gccataatga tcgtcggcaa
     1681 acaaggtgtg gccaatgtac ttcatgtgca cccgaatctg gtgggtacgg ccggtttcca
     1741 gttcgcattc caccagcgtt acgtaatgaa aacgctccaa cactttgtaa tgcgtgatgg
     1801 catgcttgcc atgttcgcct tcgggaaaag cttcgaactg tttacgatag cgggggctgc
     1861 ggccaacatg cgcttcaatg gtgccctctt cattttctac atcaccccat accagggcca
     1921 catatttcct ttcaatcgta tgattgaaaa actgtttggc gaggtgttgc agagcccggt
     1981 cggttttagc cattaacagc aatccgctgg tgttcttgtc gatgcggtgc accagcccga
     2041 accggggcag gttgaactcg gtgagttcag gattttgctg cagcaggtaa tgcgctacgc
     2101 cattgaccaa agtgcctttt gggttgccgc tgccggggtg caccaccagt ccggcaggtt
     2161 tgttgatcag caacacatcg tcatcctcgt acacaatgtt caggtccatt ggttcaggaa
     2221 tgatatccgt gctgtcgggg tgctcttcgc tgaacaccac gatctcgtgc ccggccttca
     2281 ctttgaaatt gggcttcaca gggttgccat ccaccgtgat gagacccgca tgcagtgcct
     2341 gctggatctt gttgcgggtg gcgccttcga tgcggttcat caaaaacttg tcgatgcgca
     2401 gcggttcctg tcctttgtcg gcttttacca ccagcctttt gtacagttca tccgattcgt
     2461 tgccttcgtc gggcaggttc aattcttcgt ccagcatgat ttagcgattc attgcggaag
     2521 cccgcaaaat gcggttccct attttcgcaa agtaaatgag tagccaacaa atcgttcgat
     2581 ggaaagatat gggcctgcaa cgctataagc cggtgtggga ctaccaggag caactgatgc
     2641 agcaggctac cgataccaaa agggccgaat ttgagtggcc tgccgcagaa agatctaccc
     2701 ggcattacct gcttttggta gaacatccgc ccgtttacac ccttggaaaa agcggtcacc
     2761 tggagaatat cctcattacc gaggaggaaa tgactgcccg gggcatcgat tatttcaaga
     2821 tcaatcgcgg gggcgatatc acctttcatg gaccgcagca attggtggga tatcccatcc
     2881 tcgacctcga aaagttttat accgacattg gcaaatacct gcgcaacctg gaagaggtga
     2941 tcattaaaac cattgcccac tacgggctga aaggggagag gtcaagcggt gaaaccggcg
     3001 tttggatcga ccctgacaag aaaggcagcg aacgaaagat ttgtgcaatg ggcgtacgct
     3061 gcagcaggtg gatcaccatg cacggctggg cactcaatgt aaacaccgac ctcgattatt
     3121 tcagccacat cattccctgt ggcatcaaag acaagcaagt cacttccat
//
LOCUS       DATIQF010000666         2152 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_147628,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000666 DATIQF010000000
VERSION     DATIQF010000666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147628"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..504
                     /locus_tag="VLL95_11320"
     CDS             <1..504
                     /locus_tag="VLL95_11320"
                     /inference="COORDINATES: protein motif:HMM:NF013225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HSR39495.1"
                     /translation="VTFIDTPGAFPGIEAEERGQGEAIARNIYEMLRLRVPVICVVIG
                     EGASGGAMGIGVGDRVLMLENTWYTVISPESCSSILWRSWDKKEVAAEQLKLTSDYML
                     QFGLVDGVVKEPDGGAHWDYDEAAENLKSAILPLIDELKQIPAEERISQRIKKFGAMG
                     FFEELPD"
     gene            537..1403
                     /gene="dapA"
                     /locus_tag="VLL95_11325"
     CDS             537..1403
                     /gene="dapA"
                     /locus_tag="VLL95_11325"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HSR39496.1"
                     /translation="MQNFSGVGVALVTPFNEDHSIDFHSLERLISYTIRGKVDYLVTL
                     GTTGEVATLSEEEQLAVLAFTIEKAGRVPVVVGIGGNNTSEIVRKLQNWPLQNVAAVL
                     SVSPYYNKPSQEGIYQHYAAIAKASPIPVILYNVPGRTSSNISAETTIRLANDFPGKI
                     VGTKEASGNMVQCMHLVKNKPEGFALISGDDHITLPLIAFGFHGVISVVANSFPSEFC
                     QLVHMAMNGNYAEARNFQSALLEKMDMLFIENNPAGVKAFLAEMGIIQNHLRLPLVPL
                     SEKYMDTIRKMI"
     gene            1403..>2152
                     /locus_tag="VLL95_11330"
     CDS             1403..>2152
                     /locus_tag="VLL95_11330"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HSR39497.1"
                     /translation="MRRILAIIFFTGSLLTGSFVFCQQVTVTMQLVQLPSGTAKDSVY
                     TAGNFNGWNPSSAAGRFDKEGKLQLTVQKGSLVEFKCTQGSWQRVEVTADGSSIANRS
                     FKAAGDTVIDISIAAWSHQFAPRSKPHTASPQVSVWDSSYSIKSLNRKRTIRVYLPPD
                     YHTAKQRYPVLYLCDGQNVFDEFTSSYGEWKVDETLDSFYRATGKSMIVVAVDHGDKY
                     RMTEYNPYNHARFGQGEGVEFVRFLAHQLKPH"
BASE COUNT          588 a          483 c          565 g          516 t
ORIGIN      
        1 gtcactttca ttgatacgcc gggtgctttt ccgggcattg aagcagaaga gcgtggacaa
       61 ggcgaagcca ttgcccgaaa catttatgaa atgctgcgac tgcgagtgcc ggtgatctgc
      121 gtagtgatag gcgaaggcgc cagtggaggt gccatgggca taggcgtagg cgaccgtgtg
      181 ctgatgcttg aaaacacatg gtacactgtg atcagtcccg aaagctgcag ctccatcttg
      241 tggcgcagtt gggataagaa ggaagtggcc gccgaacaac tgaagctcac cagcgattac
      301 atgctacagt ttggcctggt ggacggcgtg gtgaaagaac cggatggagg cgcacattgg
      361 gattatgacg aagccgcgga aaatttgaaa tcagccatcc tgcccttgat agacgaattg
      421 aagcaaatac cggcagaaga gcgcataagc cagcgtatca aaaagtttgg cgctatgggc
      481 ttttttgaag aattgccgga ttaatcgaaa cattaacagc aatcaggaca ataacaatgc
      541 aaaatttttc aggagttggc gttgcacttg taactccttt caatgaggat cattctatcg
      601 attttcattc gctggaaaga ctcatcagtt ataccattcg cggaaaggtg gattacctgg
      661 taacgctggg caccactggc gaagtagcca cgctttcaga agaagagcaa ctggcggtat
      721 tggcttttac cattgagaaa gcaggccgcg taccggttgt agtgggtatt ggcggaaata
      781 acaccagcga gatcgtacgc aaactgcaga actggccgct gcaaaacgtt gcagccgtgc
      841 tgagcgtgag tccttattac aacaaaccat cgcaggaagg catctaccag cactatgctg
      901 ccatagccaa agcctcaccc atacctgtga tcctgtacaa tgtgccggga cgtacttcct
      961 ccaacataag cgctgaaaca actattcggc tggccaatga ttttccgggt aaaatagtgg
     1021 gcactaaaga agccagtggc aacatggtac aatgcatgca cctggtgaaa aacaaaccag
     1081 agggatttgc gctgatcagt ggcgatgatc acatcacgct gcctttgatc gcttttggtt
     1141 ttcacggcgt gatcagtgtg gtggccaaca gttttccttc tgagttttgc caactggtgc
     1201 acatggcaat gaatggcaat tatgcggaag cccgcaattt ccagtcggca ttgctggaaa
     1261 aaatggatat gctttttatt gagaacaatc cggctggcgt aaaagcattt ttggcagaga
     1321 tgggtatcat tcagaatcat cttcgactgc ccctggtgcc actgagcgaa aaatacatgg
     1381 ataccatccg aaaaatgatt tgatgcgtcg cattttagct atcatatttt ttacagggag
     1441 cctgcttaca ggctcttttg ttttttgtca gcaggtaaca gtcacgatgc agctggttca
     1501 attgccttca ggcactgcca aagacagcgt gtacacagcc ggcaatttca atggctggaa
     1561 cccatccagt gcagcaggtc ggtttgataa ggaggggaag ttgcagttga ctgttcaaaa
     1621 aggatcattg gttgagttca agtgcacaca agggagttgg caaagagtag aggtaactgc
     1681 ggatggcagc agcatcgcaa accggtcttt caaagcagct ggcgatactg tcatcgatat
     1741 ttctattgct gcgtggagcc atcaatttgc gccgcgaagc aaaccacata cagcctctcc
     1801 gcaggtgtct gtttgggatt catcctattc gataaagagt ttgaacagga aacgaaccat
     1861 tcgcgtctac ctgcctcctg attaccatac cgctaaacag cgatatcctg tattgtattt
     1921 gtgcgacggg cagaatgtgt tcgatgaatt cacatcatct tacggcgaat ggaaagtgga
     1981 tgaaaccctg gacagttttt atcgtgccac aggaaaaagc atgatcgtgg tggcagtaga
     2041 ccatggcgac aagtacagaa tgaccgagta caatccatac aaccatgcac ggtttggaca
     2101 aggggaagga gtggaattcg ttcgattctt agcccaccag ctcaagcccc at
//
LOCUS       DATIQF010000667         1730 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_25966, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000667 DATIQF010000000
VERSION     DATIQF010000667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1730
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25966"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..763)
                     /locus_tag="VLL95_11335"
     CDS             complement(<1..763)
                     /locus_tag="VLL95_11335"
                     /inference="COORDINATES: protein motif:HMM:TIGR01250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline iminopeptidase-family hydrolase"
                     /protein_id="HSR39498.1"
                     /translation="MRLIAFVLTAIVAAAACQQESSNQIPLSFFARTDSGLQTGGVKM
                     IPIETPKGTYNVWTKRIGNNPRIKLLLLHGGPGGTHEAFECFESFMPAEGIEMIEYDQ
                     LDSYYSDQPNDSSLWTTERFVEEVEQVRKALGADSSNFYVLGHSWGGILAMEYALKYQ
                     QHIKGLIISNMMSDVPAYGKYAQEVLAKQMDPNVLDTIRGLEAKGDYGNPKYMELLTT
                     HFYNQHVCRIVPNPEPVARMFKHLNPNIYVTMQGPS"
     gene            1104..1565
                     /locus_tag="VLL95_11340"
     CDS             1104..1565
                     /locus_tag="VLL95_11340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39499.1"
                     /translation="MVLPFMRMMGKGLLFSAFVIVHYKTNNQMQRKIFQSRSVATLLL
                     ATAFILSCQKGLAPREKTASDVALAESTTVTATVSPELQGRALAANCFQCHGTNGYAS
                     ELKIAGINASALQSKFAEMRARGARDNIMNVHAFAYTTAEVNLIGNFFSQQ"
BASE COUNT          446 a          427 c          410 g          447 t
ORIGIN      
        1 cactgggccc ctgcatagtg acataaatat tcggattgag atgcttgaac atgcgggcaa
       61 ccggttcggg gttgggcaca atgcggcaca catgctggtt gtaaaaatgc gtggtcagca
      121 gttccatgta tttcggattg ccatagtcgc ccttcgcttc caggccccga atggtatcaa
      181 gcacgttcgg atccatttgt ttggccagca cttcctgcgc atattttcca taggcgggca
      241 catcgctcat catgttgctg atgatgagtc ctttgatgtg ctgctggtat ttcaatgcgt
      301 actccatggc caatatgcct ccccagctgt gacccagcac gtaaaaatta ctgctgtcgg
      361 caccgagggc tttgcgcacc tgttccactt cttccacaaa tcgttcggtg gtccacaggc
      421 tgctgtcgtt gggctgatcg ctgtagtaac tgtcgagctg atcgtattca atcatctcaa
      481 tgccttcagc aggcatgaag ctttcaaaac attcaaatgc ttcatgggta ccgccgggcc
      541 cgccgtgcaa cagcaggagt ttgatccgcg gattgttgcc aatgcgtttg gtccatacgt
      601 tgtaagtgcc cttgggtgtt tcaatcggta tcatctttac gccacccgtt tgcaggccgc
      661 tatcggtacg ggcaaaaaag gacaaaggga tttgattgct gctttcctgt tggcaggcag
      721 cagctgctac tatggcggta agaacaaaag cgatcaggcg cataggtttt gattggttga
      781 tagatgatga atgaattttc aatataagcc gaaagtgagt ctccttcaaa cagggttcaa
      841 aatcccggct gcagacagtt tattttcttg acattcatca aaaaacatct taatgtgact
      901 taagtccaaa agctggcatg tcatttgcca tactttcaca cagagcttaa tacttgccca
      961 ttggtaagac cacggataga aagcccatta gcgtgaattt caaggaacag ccaggttatc
     1021 cacaattgta ccaaactatt taggctctcg caccacggaa tcaaaatctg aagtctgcaa
     1081 atggctggtc ataccggcct gtaatggtat tgcctttcat gcgcatgatg ggcaaaggac
     1141 ttctgttttc ggctttcgtc attgttcact ataaaaccaa caaccaaatg caacgaaaaa
     1201 tcttccagtc gcgatccgta gcgacattgc tgctagccac agcattcatc ctatcctgcc
     1261 agaaagggct ggcgccgaga gaaaaaactg ccagtgatgt agcactagct gaaagtacca
     1321 ctgtaactgc caccgttagc cctgaattgc aaggacgggc attagccgcc aactgctttc
     1381 agtgccatgg caccaatggt tacgcttcag agctcaagat tgcaggcatc aatgcttctg
     1441 ctttgcaaag caagtttgcg gaaatgcggg caagaggagc gagagacaac atcatgaatg
     1501 ttcacgcctt tgcttatacc accgcagagg tcaacctgat cggcaatttc ttttcacaac
     1561 aataaaaagc agtccacatg aaacgcagaa actttctcag gaacattggc ggcaccgcct
     1621 tcggcttatc tatccttcag actgctttgg caaaaggcat gacagaaaac cttgacctgc
     1681 tggatgatcc ctaccaggta ttgggcaact caggagcggt gggtgaaatt
//
LOCUS       DATIQF010000668         4480 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_86612, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000668 DATIQF010000000
VERSION     DATIQF010000668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4480
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86612"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2251)
                     /locus_tag="VLL95_11345"
     CDS             complement(<1..2251)
                     /locus_tag="VLL95_11345"
                     /inference="COORDINATES: protein motif:HMM:NF040138.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HSR39500.1"
                     /translation="MKYGLINTIRKCLLLIGSMLLAWPLLAAHLKGGYIEYEYLGPVS
                     GNNSLQRYRVTVYQYLDCSSTGGQVDNDVFLGVYREGSPTIVSQQTVGLAGTNIISKG
                     SFTCINNPPQVCYRIDKYVAEIELPNSPTPYILTVQRCCRIANIVNVPLSSGTGVTYT
                     ATIRTNDAGGLVLANSSPEFVQKDTALVCASNTFTLPFEAIDKDGDSLVYNFTSGLNT
                     PSREAKPNPPLAPPFPGLSYAGSFSAQQPLGDKVTINRTNGVISGIAPDFAGDYVVAV
                     MVEEYRKGLKIGEARKELHISVGNCDIPRAALPDRIINCDNNTVFFQNQSTSSAITSY
                     FWDFGLTASAGDTSNQATPSFTFPDTGVYKVKLVTNRNAFCPDSAETLVSIFPGFNPA
                     FNIDGVCQQLPYQFSDATTARYGVVNKWNWDFGDPATTADRSTLRNPSYKYPAAATVT
                     VTFSVETSKGCADTLTRDLAILDKPVVQLAFKDTLICSIDSLQLRASGSGTFTWTPAS
                     NIINANTATPVVFPKDTITYYVTLTDRGCVGTDSVKVNVLDFITVDAGNDTTICRTDG
                     IVLRPVTEALSFNWQPATVLSNPAIRNPLATPVDSLTTFYVNANLGKCQARDSIRIRT
                     VPYPVAFAGNDTTICYADAVVLRGSGDGAFARWTPAAAIANANAYSTSARPVSSTTYT
                     LTVTDNRGCPKAVTDEVVVTVRPRITLNAGNDTTVVYNQTLQFNAATNASQIRWSPAT
                     ALSNPNIANP"
     gene            complement(2385..>4480)
                     /locus_tag="VLL95_11350"
     CDS             complement(2385..>4480)
                     /locus_tag="VLL95_11350"
                     /inference="COORDINATES: protein motif:HMM:TIGR04131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HSR39501.1"
                     /translation="VCYSSPITLYYCAVDNEKDSLDYYFIEAYIGADQGNPNPQRAAP
                     PPYGSLPYANGYSSTNPFGTNLKIDNRTGLITGRTPSVTGEFVLAVGVDEYRNGKKIA
                     TTRKELHVNVANCAIAAAQLPVRITSCDGFTVQFENLSSSPAILSYHWDFGVKSRTDD
                     TSVFAVPQYTYPDTGVYTAKLVVNKGSACSDSATTEVRVFPGFFPAFSSSGSCYLNDF
                     VFTDQSTTRYGSINYWRWDFGNTAVTNDTSLLRNPVYRYPGIGNYTASLIVGSDKGCI
                     DTISALQVVTDKPNLRLAFRDTLICSIDTLQLQAIGAGTFQWAPSATLLNPTSPTPLV
                     FPKNTTYYFVTLSENGCTGTDSVKVNVIDNVTLDAGPDTTVCLTDPVTMRPVTNGLYF
                     NWQPASIFASNTLRNAVATPVAAITRVQVTASVGKCRSTDSLTLRTVPYPQVNAGNDT
                     IICYADTVFLRGSTNGIAYAWSPPGLVQNPAQLSTIATLTQTTTFTLTATDNKGCPKP
                     ATDNVVVTVRPRVVVNAGNDTAVVYNQRLQFNATSTAGRFSWTPSTALSNSNIANPVA
                     VYTAASIADGSDFIRYTVTASTPEGCAASDDIVVRIFRTVPTVFVPNAFTPNADGLND
                     VIRPVLAGIQRLEFFRIYNRYGELVFETRESGKGWDGRVKGQLQSGNAYVYQVKAIDF
                     QGETIFNKGTFVLIR"
BASE COUNT          933 a         1104 c         1424 g         1019 t
ORIGIN      
        1 gcgggttggc aatattggga ttgctgagcg ccgtggccgg gctccacctt atttgtgatg
       61 cgttggtggc agcattgaat tgcagggttt gattgtacac cactgtagtg tcgttgccgg
      121 cattgagggt gatgcggggg cgcaccgtca ctaccacctc atcggtcacc gctttggggc
      181 aaccccggtt gtcggtaacg gtgagggtat aggtggtgct ggaaaccggc cgggccgagg
      241 tactgtaggc attggcattg gcaatggcag cagccggtgt ccagcgggca aaggcgccgt
      301 cgccgctgcc ccgcagcaca acggcatcgg catagcagat ggtggtgtcg ttgccggcaa
      361 aggccaccgg gtagggaacc gtgcggatgc gaatggaatc acgggcctgg cacttgccga
      421 ggttggcatt tacatagaaa gtagtgaggc tgtctacagg ggtggcgagt gggttgcgaa
      481 tggccgggtt gctcagtact gtagccggtt gccagttgaa gctcagcgct tctgtgaccg
      541 gtcgcagcac aatgccatcg gttctgcaaa tggtggtgtc gttgccggca tccaccgtaa
      601 tgaaatcaag cacgttcact tttactgaat cggtgcctac gcagcccctg tcggtaagcg
      661 ttacatagta ggtgatagtg tctttgggaa aaacgaccgg cgttgcagta ttggcattga
      721 tgatgttgga agccggtgtc caggtaaaag tgccgctacc gctggcccgt agctgcagcg
      781 agtcgatgct gcagatgagc gtatccttga atgccagctg cacaacaggt ttatcgagaa
      841 tggccaggtc acgggtcagg gtgtcggcgc agcccttgga ggtttcgacc gaaaaagtaa
      901 cggtgacggt ggctgcggca gggtatttgt acgaaggatt gcgcagggtg ctcctgtcgg
      961 cagtggtggc cgggtcgcca aaatcccagt tccatttgtt gaccaccccg tagcgggccg
     1021 tggtggcatc ggagaactgg taaggcagtt gctggcaaac gccatcaata ttgaaggcag
     1081 gattgaaccc gggaaaaatg ctgaccaggg tttcggcgct gtcggggcaa aaggcattcc
     1141 ggttggttac cagtttcact ttgtacacgc cggtatccgg gaaggtaaat gaaggcgtgg
     1201 cctggttgct ggtgtcgccg gctgatgccg tgaggccaaa gtcccagaaa taactggtga
     1261 tggctgatga ggtcgactgg ttctggaaga acacggtgtt gttgtcgcaa ttgatgatgc
     1321 ggtccggcag tgccgcccgg ggaatgtcgc agttgcccac cgagatgtgc agttctttcc
     1381 gggcttctcc aatcttcaat cctttgcggt attcttccac cattactgcc accacgtaat
     1441 cgccggcaaa gtcgggggcg atgccactga tgaccccatt ggtgcggttg atggtcactt
     1501 tgtcgcccag cggttgctgc gcactgaaac tgccggcata cgacaagccg ggaaacggtg
     1561 gtgccagggg cggattgggc tttgcttccc gcgaaggcgt attgaggcca ctggtgaaat
     1621 tgtacaccaa tgaatcgcca tccttgtcga tggcttcaaa gggcagcgta aacgtattgc
     1681 tggcgcaaac cagggcggta tccttttgca caaactccgg gctgctgttg gccagcacca
     1741 ggccccccgc gtcgttggtg cgaatggtgg ccgtgtaggt gacccctgtg cccgatgaca
     1801 atggcacatt cacgatgttg gcaatccggc agcagcgctg tacggtaagg atgtagggcg
     1861 tgggggagtt gggcagttca atttcggcca cgtatttatc gatgcggtag caaacctgtg
     1921 gcgggttgtt gatgcaggta aaactgcctt ttgaaataat gttggtgccg gccagcccca
     1981 cggtttgctg gctcacaatg gtggggctgc cttcgcggta tacgcccagg aaaacgtcat
     2041 tatccacctg gcccccggtt gaactgcaat caaggtattg gtatacggtg acgcggtaac
     2101 gctggaggct gttgttgccg gaaacgggac ccaaatactc atactcaata tagccgccct
     2161 tgagatgcgc tgccagcagc ggccatgcca gcagcatgct gccaatgagc aacaggcatt
     2221 ttcgtatggt attaatgagg ccgtatttca ccggaaaaag caggagtgag ttttgtgggc
     2281 gttgaaaata aggcaacatt ggaaggggct gcagcatcgc atggccggct tccgacattt
     2341 taacaaatga caccgtggaa tggaaaagcg ttgccgttga tcaatcagcg gatcagcaca
     2401 aaggttcctt tgttgaaaat cgtttcgccc tggaagtcga tggcctttac ctggtataca
     2461 taggcattgc cagactgcag ctgacctttt acccggccat cccaaccttt gcccgattca
     2521 cgggtctcga acaccagttc gccatagcgg ttgtagatcc tgaaaaactc gagtcgctgt
     2581 atgcctgcca gtaccggcct gatgacatcg ttgaggccat cggcgttcgg ggtgaaagca
     2641 ttgggcacaa acacggtggg cacggttctg aaaatcctga ccacaatgtc atccgaagca
     2701 gcacaacctt cgggtgtgct ggcggttacg gtgtagcgta tgaaatccga tccgtcggcg
     2761 atgctggctg ccgtgtacac cgctaccggg ttggcaatat tggaattgct gagggccgtg
     2821 gacggggtcc agctgaacct gcctgcggtg gaagtggcat tgaattgcag cctttgattg
     2881 taaaccacgg ccgtgtcgtt gccggcattc accaccaccc tcggtctgac ggttaccacc
     2941 acattatcgg tggctggttt ggggcagcct ttgttgtcgg tggcggtgag tgtaaaggtg
     3001 gtggtttgcg taagggtggc gatggtggaa agttgtgccg ggttttgcac caggcccggt
     3061 ggcgaccatg cataggcgat cccgttggtg gatccgcgga ggaaaaccgt gtcggcataa
     3121 caaatgatgg tatcgttgcc ggcattcacc tgcgggtagg gcacggtgcg cagcgtgagg
     3181 gaatcggtgc tgcggcactt gcccacgctg gctgttacct gcaccctggt gatggccgcc
     3241 accggtgtgg ccaccgcgtt gcgaagggtg ttgctcgcaa agatggaggc aggttgccaa
     3301 ttgaaataaa ggccattggt caccggtcgc atggtcactg ggtcggtgag gcaaacggtg
     3361 gtgtcggggc cggcatccag ggtcacattg tctatcacat tcacttttac cgaatcggta
     3421 cccgtgcagc cattttcaga aagcgttaca aaatagtagg tagtgttttt gggaaagacc
     3481 agcggcgtgg gcgaggtagg attgagcagg gtggcagaag gcgcccactg gaaagtgccg
     3541 gcacctatgg cctgcaattg cagcgtatca atgctgcaga tgagcgtatc ccggaaggcc
     3601 aatcgcaaat tcggtttatc ggtcaccacc tgcagtgcac tgatggtgtc aatacatccc
     3661 ttatcgctgc ctactattaa ggaggccgtg tagttgccga taccgggata gcggtacacc
     3721 gggttccgca gcaggctggt gtcgttggta acggccgtgt tgccaaagtc ccagcgccag
     3781 tagttgatgc tgccgtaccg ggtggtggat tggtcggtaa aaacaaaatc attcaggtag
     3841 caggaacccg acgacgagaa tgccgggaaa aagcccggga ataccctcac ttctgtagtg
     3901 gcgctgtcgc tgcaggcgga gcctttgttc accaccagtt tggcggtgta aacccctgta
     3961 tccgggtaag tgtattgcgg cacggcaaac acgctggtgt catcggtcct tgattttacg
     4021 ccaaaatccc aatggtagct caggatggca ggcgaggaag acaggttctc aaattgaacc
     4081 gtaaagccat cgcagctggt gatgcgcacc ggcaattgtg cggctgcaat ggcgcagttg
     4141 gccacattca cgtgcagctc tttgcgggtg gtggcaattt ttttcccgtt gcggtattca
     4201 tccacgccca ctgccagtac aaattcgccg gtgaccgagg gcgttcggcc ggtgatgagc
     4261 ccggtccggt tatcgatctt cagattggtg ccaaaggggt tggtggacga atagccgttg
     4321 gcataaggca gcgatccata gggaggaggc gccgcccttt gcggattggg gttgccctgg
     4381 tccgcgccaa tataggcttc gatgaaatag taatcgaggg agtctttctc attgtctacc
     4441 gcgcaatagt acagcgtaat gggggaactg tagcacacca
//
LOCUS       DATIQF010000669         2535 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_193208,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000669 DATIQF010000000
VERSION     DATIQF010000669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2535
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193208"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(175..>2535)
                     /locus_tag="VLL95_11355"
     CDS             complement(175..>2535)
                     /locus_tag="VLL95_11355"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing tetratricopeptide repeat
                     protein"
                     /protein_id="HSR39502.1"
                     /translation="FGPLNEFSASALSNQGLIATETGDYANAEEYHRKAFILRKDLYG
                     LDHAMVALSMTNLATLMIYQSRFEDADKLLAAAYEIESRKGLLTTPVGLMTFNNIAML
                     LQKQGDYERAEQFYQKVLELLKTDSVQNKTVYGLVLNNLSTNALDLKKYDASLQYATR
                     AMEAVQKMEGTASQAYLRAANNQVVDFMKLRQFDNARKAGLQLAAQIKKSYGDSASLL
                     ETVYSNLSSLEAQTGNLPLAVQYLQQSLQLQMHNYEKNIYALSERDQVAYWQQQSYTF
                     QLFPALLLAMKNPDAEWIGTMVNQQLRLKGFVLNNASATLQKARQLKDEKLQLLIDEW
                     QSTRSLYLQQSALPLNDRLYSADSLSIMANNIEQAINKKAGKALFAKTSAVTWQQVQQ
                     SLESDETAVEFIRIPLFENNRYTDSIFYAAIVIPNKGLPSLVKLGDEKTVEWCMTAGK
                     TDSKEVAIAQLYRSSIKPKNNYGPAFTGDSLYRVIFQPLLPYLQQAKKISYAPDGLLH
                     KIAFAALPTGAGTILLDSFQVQQFSSVRLIASRNNNAANWKTAVLAGFADFGSSGQSA
                     NAWSPLPGTEKELQTLQSLFQSRQVTSKVFTANNATEENLKKLSNQAPAILHIATHGF
                     FLPDPPMNNTTGALPSPGMNPAAPDQNPLMRSGIVLAGANRYWKNAQVAVGKDDGIVT
                     AYELAQLNLQGTEMAVLSACETGLGDVQDAEGVFGLQRALKMAGIKYMLLSLWEVPDN
                     ETMELMTLFYSQLLSGSTPRNAFDQAQRSMRAKYPPYAWAAFVLME"
BASE COUNT          544 a          629 c          669 g          693 t
ORIGIN      
        1 aggcgcaccg gataacatta cggtggtaag cgtggctgac ctgtttgccg tagccattcg
       61 caatgctttt gaaaacaaga gcatccacag cctgtttgta cacagtcaca gaaagtaaca
      121 gcgattactg tttatataaa atccattgca gctgcaatgg ctttttgtat ggcgtcattc
      181 catcagtaca aaagcagccc atgcgtaggg cggatatttt gcccgcatgc tgcgttgcgc
      241 ctggtcgaag gcattgcggg gcgttgaccc gctgagcagt tgcgagtaga acagcgtcat
      301 gagttccatc gtttcattgt cgggcacttc ccacaggctc agcagcatgt atttgatgcc
      361 tgccattttc agggcccgct gcaatccaaa tacaccttca gcatcctgca cgtcgccaag
      421 gccggtttcg caggcactca gcactgccat ttcggtgccc tgcaggttta gttgggccag
      481 ttcgtaggcc gtcactatgc catcgtcttt cccaacagcc acctgtgcat ttttccaata
      541 gcggttggca cctgccagca caatgccact gcgcatcaaa ggattttgat cgggcgctgc
      601 cgggttcatt cccggcgatg gcagggcgcc agttgtattg ttcatcggtg gatcgggcag
      661 gaagaaacca tgggtggcta tgtgcaaaat ggctggtgcc tggttgctga gttttttcag
      721 gttttcttcc gtggcattgt tggcggtaaa taccttgctc gttacctggc gggattgaaa
      781 taaggactgc agtgtctgca attctttttc tgtaccgggc aaaggcgacc aggcgttggc
      841 cgactgacca ctgctgccaa aatcggcgaa accggccagt actgcggttt tccagttggc
      901 ggcattattg tttcggctgg cgatgagccg caccgaagag aattgttgca cctggaaact
      961 gtcgagcaaa atggtgccgg caccagtagg caatgccgca aatgcgattt tgtgcagcag
     1021 gccatcgggt gcatagctga tcttttttgc ctgctgcagg tagggcagga gcggctgaaa
     1081 aatgacacgg tacaaactat cgccggtaaa agccgggcca taattgtttt tgggtttgat
     1141 gctgctgcga tacaactgtg cgatggccac ttctttgctg tcggtttttc ctgccgtcat
     1201 gcaccattcc accgtttttt cgtcacccag ctttacaagg gatggcaggc ccttattggg
     1261 gatgacaatc gcagcataaa aaatggagtc ggtataccgg ttgttttcaa acagcgggat
     1321 acgaatgaat tcaaccgcag tttcatcact ctccagcgac tgctgcacct gctgccaggt
     1381 aacagcggaa gtttttgcga acagtgcttt gcccgctttc ttgttgatgg cctgttcaat
     1441 attattggcc atgatggaaa ggctgtcggc tgaatacaat cgatcattga ggggcaaggc
     1501 tgattgctgc aaatacaagg agcgggtgga ctgccactcg tcgatcagca gctggagttt
     1561 ttcgtctttc aattgtcttg ctttttgcag cgtggccgat gcattgttga gcacaaatcc
     1621 ttttagccgc agttgctgat ttaccatggt gccaatccac tcagcatccg ggtttttcat
     1681 ggccagcagc agcgccggga aaagctgaaa agtataggat tgctgctgcc agtacgccac
     1741 ctggtctctt tcgctgagcg cataaatgtt tttttcatag ttgtgcattt gcaattgcag
     1801 cgattgctgc aggtattgca ctgccaaagg aaggttgccc gtttgtgctt ccagcgaact
     1861 caggttgctg tacactgtct ccagcaggct ggcagagtcg ccataagact ttttgatttg
     1921 tgccgccagt tgcagcccgg cttttctggc attgtcaaat tgcctgagtt tcataaagtc
     1981 caccacctgg ttgttggcag cacgcaggta agcttgcgag gcagtgcctt ccattttttg
     2041 caccgcttcc atggccctgg tagcgtattg caaactggca tcatattttt tcaggtccag
     2101 cgcattggtc gagaggttgt tcaacaccaa accatacact gtcttgtttt gcacgctgtc
     2161 ggtcttcagc aattccagca ctttctggta aaactgttcg gccctttcat agtcaccctg
     2221 cttttgcagc agcatggcga tattgttgaa agtcattaat cctacaggcg tggtcagcag
     2281 ccctttgcga gactcaattt cgtaggcggc agcgagcagt ttgtccgcat cttcaaaacg
     2341 cgactggtaa atcatcagcg ttgccaggtt ggtcattgaa agcgccacca tggcatggtc
     2401 taagccatac aaatcctttc gcaaaatgaa agccttgcgg tggtattctt ctgcgttggc
     2461 atagtctcct gtttctgtgg cgattaaacc ctggttcgac agggcggaag cgctgaattc
     2521 attgagtggg ccaaa
//
LOCUS       DATIQF010000670         3301 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_208640,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000670 DATIQF010000000
VERSION     DATIQF010000670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3301
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208640"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..361
                     /locus_tag="VLL95_11360"
     CDS             <1..361
                     /locus_tag="VLL95_11360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39503.1"
                     /translation="GAPHDVRAAAEVRSPEALPEHRHRGSADTVLVLGELASIEADGA
                     PHDVRAAAEVRSPEALPEHRHRGNLFGFLGLIFGPFLLSIFILLVRVYYDEFVISTTA
                     DAPDIPHHDAGHHPHTH"
     gene            complement(382..1785)
                     /locus_tag="VLL95_11365"
     CDS             complement(382..1785)
                     /locus_tag="VLL95_11365"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSR39504.1"
                     /translation="MKISFHGATRTVTGSKHLLHLDNGQKLLLDCGLFQGLGKETDVL
                     NRDFGFIPQEIDAVVLSHAHIDHSGMLPGLVKEGYLNKIFCTPATKDLATILLEDSAG
                     IQANEIKYQNKRRKQEGKTLLEPLYSETDAMAAAALLEPRPYNEWFKVLDGVECMYTE
                     AGHIIGSACVNLRITHQGKVTHLAFSGDVGRYRDAILKSPEPFPQADYIIMESTYGNS
                     LHDDVFSSVDTLLNWVVDTCLKKKGKLIIPAFSVGRTQELLYFLNQLDNENRLPPIPY
                     YVDSPLSYEATQVLKSHPGGFNKTVRQIMETDHDPFHFKGLHFIRSAEESKQLNFSSY
                     PCVIISASGMAEAGRVKHHISNNIENSRNTILLVGYCEPHSLGGRLKNHPAEVSIFGI
                     PHEVHATIGEMRSMSAHGDYEDLMQWLSCQDLNAVKEMFLVHGEYEVQQQFAQRLERK
                     GLKQVTIPSRHSMHHID"
     gene            complement(1792..2481)
                     /locus_tag="VLL95_11370"
     CDS             complement(1792..2481)
                     /locus_tag="VLL95_11370"
                     /inference="COORDINATES: protein motif:HMM:NF014626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA];
                     GO_process: GO:0018142 - protein-DNA covalent
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SOS response-associated peptidase"
                     /protein_id="HSR39505.1"
                     /translation="MCGRYSFFTPIPEIELTLGVKAVEWAEWQARYNAAPTQVMPVIT
                     NEFPNVIQFFRWGLVPKWAKEAAIGNKMINTRTESIIEKPGFRNIFKYRRCLVLADGY
                     YEWMATTLPPQKGGKQKITKQPYRFHLPHDEVMLIAGLWDTWQGELNTFSIITCPANP
                     DVAHIHDRMPVILNHAEAKLWLSNDVPPDQLLALLKPAPTGVLQFYPISTAVNKPVAD
                     DASILNPIQTD"
     gene            2671..3261
                     /locus_tag="VLL95_11375"
     CDS             2671..3261
                     /locus_tag="VLL95_11375"
                     /inference="COORDINATES: protein motif:HMM:NF015944.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HSR39506.1"
                     /translation="MKTKNLGIIIIIGVILVFGGCAVSGYNGLVSQDENVKKSWNNVQ
                     SEYQRRTDLIPNLVNTVKGAANFEQTTLTQLMEARAKATSININADNLTPEKLAEFQQ
                     AQAQISTGIGRLLAVVENYPDLKANQNFRDLQVQLEGTENRIKTARNDFNGAVQEYNV
                     KVRSFPMNIIAGLFGFKVKEGFKAEAGSERAPEVKF"
BASE COUNT          737 a          838 c          862 g          864 t
ORIGIN      
        1 cggagctccc cacgatgtcc gggcggccgc cgaggtgcgt tctccagaag cgctccccga
       61 gcatcgccac cgcgggtccg ccgacacggt cctcgtcctc ggcgaactcg cgtccatcga
      121 ggcggacgga gctccccacg atgtccgggc ggccgccgag gtgcgttctc cagaagcgct
      181 cccagagcat cgccaccgcg gcaacctgtt tggattcctg gggctcattt tcggtccctt
      241 cctgctaagc atatttatcc tgctggtacg cgtttactac gatgaattcg tgatcagtac
      301 cacggctgat gcgcctgata ttccccacca cgacgccggg caccatccgc atacgcactg
      361 atgttttttt gccctcctct tttagtcaat gtggtgcatc gaatgcctgc tgggaatggt
      421 aacctgtttc agcccttttc gctccaggcg ttgtgcgaac tgctgttgca cttcgtattc
      481 gccgtgcacc aaaaacattt cctttacggc gttcagatcc tggcacgaca gccactgcat
      541 caggtcttca taatcgccgt gggcgctcat gctgcgcatt tcaccaatgg tagcatgcac
      601 ttcgtggggg ataccaaaga tggatacttc agcaggatgg ttcttcaacc tgccacccag
      661 tgaatgcggt tcgcagtagc ccaccagcag gatggtgttg cgactgtttt cgatgttgtt
      721 gctgatgtgg tgttttaccc ttccggcttc agccatgcca ctggcactga tgatgacaca
      781 gggataactg ctgaagttga gttgcttgct ttcttcagcc gaacgtatga aatgcagccc
      841 tttgaaatgg aagggatcat ggtcggtttc catgatctgc cgtaccgttt tattgaagcc
      901 gcccgggtgg cttttcaata cctgcgtggc ttcgtagctc agcggactgt caacgtagta
      961 gggtatgggg ggcaaccggt tttcattgtc gagttggttc aggaagtaga gcagttcctg
     1021 tgtgcggcct acgctgaagg cgggaatgat gagttttcct tttttcttca aacaagtatc
     1081 tacgacccaa ttcaacagcg tgtcgacgga tgaaaacaca tcgtcgtgca aactgttgcc
     1141 gtaggtgctt tccatgatga tgtaatcggc ctgcgggaaa ggttccgggc tcttcaggat
     1201 ggcgtcacga tatcgaccca catctccgct gaatgccagg tgggtgactt tgccctggtg
     1261 cgtaatgcgc aggttgacac aagcgctgcc aatgatgtgc ccggcttctg tgtacatgca
     1321 ttccacgcca tccagcactt tgaaccattc attgtagggg cgtggttcca gcagggccgc
     1381 ggcggccatg gcatcggttt cgctgtacaa aggttccaga agtgttttgc cttcctgctt
     1441 gcgccgcttg ttctggtatt ttatttcatt ggcctgtatg ccggcactgt cttccagcaa
     1501 aatggtcgcc aggtctttgg tggcgggggt acaaaatatt ttgttcaggt atccttcttt
     1561 cacaaggccc ggcagcatgc cactgtgatc gatgtgtgca tggctgagaa ccaccgcgtc
     1621 tatttcctgt gggatgaagc caaagtcgcg gttcaataca tccgtttctt tgcccaggcc
     1681 ttgaaacagg ccgcagtcga gcaggagttt ttggccattg tcaagatgga gcaggtgttt
     1741 ggatccggtg actgtgcggg tagcgccgtg aaaactgatt ttcataagag ttcaatctgt
     1801 ttgaataggg ttaagaatag aggcatcgtc tgcaacaggt ttgttcaccg ctgtactgat
     1861 gggatagaat tgtaagacac ccgtcggtgc cggcttcagc agcgccagca attgatcggg
     1921 gggcacatca ttgctcagcc acaatttcgc ttccgcatga ttcaggatca ccggcatacg
     1981 gtcatgaatg tgtgctacat ccgggttggc cgggcaggta atgatggaaa aagtattgag
     2041 ttcgccctgc caggtatccc acaatcccgc tatcagcatt acttcatcgt gaggcaggtg
     2101 aaagcggtaa ggctgcttcg ttattttttg ttttccccct ttttgagggg gcagggtggt
     2161 ggccatccat tcatagtagc catcggccaa taccaggcat cgcctgtatt tgaaaatatt
     2221 ccggaatccc ggtttttcga tgatgctttc tgtccgtgta ttgatcatct tgttgccaat
     2281 agcggcttct ttggcccatt tcggtaccag gccccagcga aaaaactgga tcacgtttgg
     2341 aaattcattg gtgatgaccg gcatcacctg ggtgggagcc gcattgtacc gggcctgcca
     2401 ttcggcccat tccaccgctt ttacgcccag cgtcagttca atttcgggga tcggtgtaaa
     2461 aaaggaatat cgtccgcaca taactttttg atcattgctc ttttaccgtt caggcaggta
     2521 aaagatggct tgttaaatgt acatgatcga tcatgtaaaa aatggtaaat cggatagccc
     2581 caatcaatat ctttaatcct tcaacctaag caggcattgt tccattttca tgcttgtcta
     2641 ttaggtttgt aatgatttaa atctacatcc atgaaaacaa aaaatctcgg catcatcatt
     2701 attatcggcg ttattcttgt gtttggtggt tgcgctgtaa gcggctacaa cggactggtt
     2761 tcccaggatg aaaacgtgaa gaaatcctgg aacaatgttc aaagtgaata ccagcgacgc
     2821 acagacctga tccccaacct ggtgaataca gtgaaagggg cggccaattt cgaacagact
     2881 actttgaccc aactgatgga ggctcgtgcc aaggccactt ccatcaatat caatgcagat
     2941 aacctgacac cggaaaagct ggctgaattc cagcaggcac aggcgcagat cagcactggc
     3001 atcggacgtt tgctggccgt ggttgaaaac taccccgact tgaaagccaa ccagaatttc
     3061 cgcgacttgc aggtacaact ggaaggaact gaaaaccgca tcaaaactgc ccgcaacgat
     3121 ttcaacgggg ctgtgcagga gtacaacgta aaagtgcgta gctttcccat gaacattatt
     3181 gccggcctgt ttggcttcaa agtgaaagaa gggttcaagg ccgaagcggg cagcgaacgt
     3241 gctccggaag tgaaattcta aatcaataca acgtgggtct tttcaactta tggaagcccc
     3301 a
//
LOCUS       DATIQF010000671         3522 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_299722,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000671 DATIQF010000000
VERSION     DATIQF010000671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3522
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299722"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..223)
                     /locus_tag="VLL95_11380"
     CDS             complement(<1..223)
                     /locus_tag="VLL95_11380"
                     /inference="COORDINATES: protein motif:HMM:NF013514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39507.1"
                     /translation="MLLSYFQEGIIEAGIDEAGRGCYAGPVFAAAVVLPPDFHHPLLN
                     DSKQLKEKDRDLLRPIIEAEAIAWSVQAVE"
     gene            315..1409
                     /locus_tag="VLL95_11385"
     CDS             315..1409
                     /locus_tag="VLL95_11385"
                     /inference="COORDINATES: protein motif:HMM:NF014665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HSR39508.1"
                     /translation="MERVSLANQPLSNNNKAVYTWLMLGVIMTIIQIALGGITRLTGS
                     GLSITEWDVVTGALPPMNEAAWLQEFDKYKATPQYRLLNTDFNLSDFKFIFFWEWFHR
                     LWARLIGVVFAAGFIYFLVRKKFQPHMVKPLIVLFLLGALQGFVGWIMVASGLEGDAV
                     YVKPTRLALHFIFALGLLSYTFWFALQLRVAPQQRLQHKTLRNAVWLMLAVLVLQLIY
                     GALMAGHKAATAAATWPTINGYWLQPPGLYNGEHGWLNFIDNKIMVHFIHRGLAYLLV
                     ILVGLFFVQARNQYGMVRRNAWIPFAIVLLQVALGILSVLSSTGIVPNEWGLFEWMAQ
                     LHQLTGMLLLLSLVFMLYLTTGGKKAAVAG"
     gene            1449..3341
                     /locus_tag="VLL95_11390"
     CDS             1449..3341
                     /locus_tag="VLL95_11390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39509.1"
                     /translation="MITTLKTYLTGIWYSLPVQLFLLHFRRYQLLLFFWYILFATVNG
                     SFMHKFGAHMLFLYPEYLNEVNIVSTALVGAGFGIFVMCWNITTFILLSRYFRFLAAT
                     TQPFLKFCINNAVMPFLFLVFYLVKAVRFAYYQELLSLPQILVLTSGFLAGFAFIIAI
                     SFLYFFNADKTIYRRMPVHARLTLANKRVQRQYPQRSRSMRVDWYLSATFRLRQPRDV
                     RHYDTAFLERIFGQHHLAAIFAVLLVFVSLIIAGFFQDSIYLQLPSAGSIMVFFAILV
                     AVLGGFSYFLGTWGIPIGLVLLAGFNVLYQKNILDPRNKAYGIDYKTAQQPAYDSSAL
                     SAANSIHRQQDSAHFIALLNQWKNKQAHPKPTLILIAVSGGGSRASAFTMHALRKIDS
                     ASQQQLLPSTFLVSGASGGMIGAAWYRELYLRQQQGFIKDHTEKKYAEAITLDLLNPI
                     FSSMVTRDLLAPAQYFEYAGKEYIRDRGYAFEQRLNRNTFGWMNRKMKDYAGYEANAS
                     IPLLMPSAVITRDGRKVWFSNHPARFLATPAFANADGKQPYPDGLDFATFFAQQDAQS
                     LSFLSVLRIKSGEIKSIRVRLFAVGIGKSGTRQETGGWLLNQTFLPSRVMTAEGMSNG
                     MEALAS"
BASE COUNT          762 a          978 c          882 g          900 t
ORIGIN      
        1 cctccacggc ctgcacactc caggcaatgg cttcggcctc aatgatgggg cgcagcaggt
       61 cgcggtcttt ttctttgagt tgcttgctgt cgttcagcag gggatggtga aagtcgggcg
      121 gcagcaccac ggcggcggca aacacggggc ccgcatagca gcctcttccc gcttcgtcga
      181 tgccggcttc aatgatgcct tcctggaaat atgacaacaa catgatgaat gaaaatcgct
      241 acaaatgttc tgcatttgaa acaattgcca gccgctaaag tgtacacagt acttttgccc
      301 ccgaaatagc agttatggag cgtgtgtctt tggccaacca gcctttatcc aacaacaaca
      361 aagccgtata cacctggctg atgctcggtg tgataatgac catcattcag attgcactgg
      421 ggggcattac ccgccttacc ggcagcggtc tcagcatcac cgaatgggat gtggtgaccg
      481 gcgccctgcc gcctatgaat gaagcggcct ggttgcagga atttgacaaa tacaaagcca
      541 ccccgcaata ccggctgctc aataccgatt tcaacctcag cgatttcaaa ttcatctttt
      601 tctgggaatg gtttcaccgg ctttgggcac ggctcattgg ggtggttttt gcagctggtt
      661 ttatttactt cctcgtacgc aagaaatttc aaccacacat ggtgaagccg ttgatcgtcc
      721 tgtttttact gggtgccctg caaggctttg tgggatggat catggtggcc agcgggctgg
      781 aaggcgatgc cgtgtatgta aaacccaccc gcctggcact gcatttcatt tttgcattgg
      841 gactgctgag ttatactttc tggttcgccc tgcaattgcg ggtggcacca cagcagcgcc
      901 tgcagcacaa aaccctgcgc aatgccgtat ggctgatgct ggcagtgctg gtgctgcaac
      961 tgatctatgg cgccctgatg gcgggacaca aagcggccac cgccgcggcc acctggccta
     1021 ccatcaatgg ctactggttg caacctcccg gcctttataa cggggaacat ggctggctca
     1081 atttcatcga caacaagatc atggtgcatt tcattcaccg cgggttggcc tatctgctgg
     1141 tgattttggt gggtttgttt tttgtgcagg cccgcaacca gtatggcatg gtacgccgca
     1201 atgcatggat cccttttgcc attgtgctgc tgcaagtggc gctgggtata ttgtcggtgc
     1261 tgtcgagcac aggcatcgtt cccaacgaat ggggtttgtt tgaatggatg gcacaactgc
     1321 accagcttac cggcatgctg ttgttgctga gcctcgtatt catgctctat ctcacaacgg
     1381 gtggaaaaaa ggcagcggta gcgggttgac aactgtctta ccttaagcac tgttgcttca
     1441 cccattccat gattactaca ctcaaaactt acctcaccgg tatttggtat tcgctgcctg
     1501 tccagctttt tcttctgcat ttccggcggt accagctcct gcttttcttt tggtacatcc
     1561 tgtttgccac ggtaaacggg tcgttcatgc acaagttcgg ggcacacatg cttttcctgt
     1621 acccggagta tctcaatgaa gtgaacatcg tcagcaccgc cctggtgggt gccggttttg
     1681 gcatcttcgt gatgtgctgg aacatcacca ccttcatatt gctgagccgt tactttcgat
     1741 ttctcgctgc cactacccag cccttcctca agttttgcat caacaatgcg gtgatgcctt
     1801 ttttgttcct ggtattttac ctggtgaaag ctgttcgctt tgcctactac caggagttgc
     1861 tttccctgcc gcaaatattg gtgctcacct ccggcttcct ggctggcttc gcctttatca
     1921 tcgccatcag ctttttgtat ttcttcaatg ccgacaaaac catttaccgc cgcatgccgg
     1981 tacatgccag gctcacccta gccaataagc gggtgcagcg tcaataccca caacgttctc
     2041 ggtccatgcg ggtagactgg tacctgagcg ccaccttccg gttgcgccag ccccgggatg
     2101 tgcggcatta cgataccgcc ttcctggagc gcatctttgg ccagcaccac ctggcggcga
     2161 tcttcgcggt actgctggtg ttcgtcagcc taatcatcgc cggttttttc caggacagca
     2221 tttacctgca actgcccagc gccggcagca tcatggtgtt ctttgccatc ctcgttgcag
     2281 tgctgggtgg cttttcttat ttccttggca cctggggtat accgatagga ctggtactgc
     2341 tggcagggtt caatgtcctg tatcaaaaaa acatcctcga ccctaggaac aaagcctatg
     2401 gcatcgatta caaaacagcg cagcagccag cttatgattc atcagcattg tcagcagcca
     2461 actccataca ccgccagcag gattccgctc acttcattgc actgctcaat caatggaaga
     2521 ataagcaggc ccatccaaag ccaacactca tactcattgc ggtgagcggt ggtggcagca
     2581 gggcatccgc atttaccatg catgcccttc gcaaaattga cagcgcttcg cagcaacaac
     2641 tgctgccctc caccttcctg gtgtccggcg cttccggcgg catgattggc gccgcctggt
     2701 accgcgaact gtacctgcgc cagcaacaag gcttcataaa agatcacacc gaaaaaaaat
     2761 atgccgaagc cattacgctt gacctgctca atcccatttt ttcttcgatg gtcacccgag
     2821 acctgctggc gccggcacaa tattttgaat acgccggcaa agagtacatc cgcgatcggg
     2881 gctatgcgtt tgaacaacgc ctcaaccgaa acactttcgg ttggatgaac agaaaaatga
     2941 aggattacgc aggctatgag gccaatgcct ccattccatt gctcatgcct tccgccgtca
     3001 ttacccgcga tggtagaaag gtctggttca gcaaccatcc cgcccggttc ctggctactc
     3061 ccgcttttgc caatgccgac ggcaaacagc cttatcctga tggacttgat ttcgccacat
     3121 tttttgcgca gcaggatgcg caatcgctca gctttctatc cgtgctgcgc ataaaaagtg
     3181 gcgaaatcaa gtccatcagg gtaaggctgt ttgccgtcgg cattggcaaa agcgggacta
     3241 gacaggaaac ggggggatgg ttgctgaacc agacctttct tccatcgcgg gtaatgacgg
     3301 ctgaaggcat gagcaacgga atggaggcat tggcttcata ggctgcataa tccttcattt
     3361 ttctattcat ccaaccaaag gtgtttcggt tgaggcgttg ttcaaacgca tagccccgat
     3421 cgcggatgta ctctttgccg gcatattcaa aatattgcgc cggcgccagc aggtcgcggg
     3481 tgaccatcga agaaaaaatg ggattgagaa gatcaagcgt aa
//
LOCUS       DATIQF010000672         4327 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_101762,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000672 DATIQF010000000
VERSION     DATIQF010000672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4327
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101762"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..523
                     /locus_tag="VLL95_11395"
     CDS             <1..523
                     /locus_tag="VLL95_11395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39510.1"
                     /translation="FPISESDYLRFAKRAKEKSDASNATREFPVELVLSDNSIFNEIG
                     KMDLANRQIDPQTGSLTLQAVFQNKERLLRPGQYVKVRLKTDEYKDAVMVPQSAINQL
                     QGIYQVFILGDSSKLKPRIIVPGDRVGSNWIVKEGIQEGEKVAIIGNAGINPKNAVKP
                     IMINWNYDSTSRK"
     gene            562..3741
                     /locus_tag="VLL95_11400"
     CDS             562..3741
                     /locus_tag="VLL95_11400"
                     /inference="COORDINATES: protein motif:HMM:TIGR00915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSR39511.1"
                     /translation="MSEFFIRRPIVAIVISKFTVLLGFLTLRGIPIAQYPEIVPPMIK
                     ITGTYNGANAVNVEQTTATPIEQQVNGVENMLYMQSINGNDGTTTINVSFEVGTNLDN
                     ANMLTQNRVAMANPFLPNDVKAMGVNTKKALAFPLMIISLYSPKATYDARFVVNYCYI
                     NVIDQIKRIKGVGDVVVFGGSEYAIRIWLKPDRMSAYNISVNDVKKAMSQYNNIYPGG
                     SFGNNPALPGVQNTYTAQLQSRLSDPNEFSKIIIKSDRTGASVKLSDIARVELGTENF
                     FQNSRLNKQNAGAIAIYQIPGSNAIDVAEEIKKTMTELESRFPQDMAYRVSLDTTIPI
                     EVGIEEIMHTLFEAVLLVILVVFIFLQDWRATLIPLLTVPVSLVGVFIFFPLMGFSVN
                     VLSLLGLVLAIGLVVDDAIVVVEAVMHHMEHGKSPKEATQIAMKEVAGPVIAIAIILA
                     AVFIPVALMPGITGRLYQQFAITIAVSVLLSAFNALTLSPALAAMILKPKNPNAKGLL
                     TKFFGWFNRGFDKFTNGYVKVAGFFARKLVISLIVLGGIVFGAGYFTKAVPGGFVPEE
                     DNGYFIMGIFLPDAASFERTDAVSRKVEDILANTDGIESYTLINGFNIMNQVVSPNTS
                     TLFVQLKDWSERKTDKEILRELNVRLAKEITEATAIAVGPPAIPGLGTGAGFTMQIQD
                     RAGGSPQELARQTQRFIMAARERPEIGSILSLFRSDVPQKSIKVDKDKVEKTGLTLDE
                     VNSTISTMLGGSFVNNFNAFGRQYRTYMQADAEFRMKPNDLEQIYIRDAKGSMVSLGT
                     LARVTDTTGPQYTNRFNLYRSAEVSGTPAPGYSSAQALRALEEVAAQTLPSTIGYQWS
                     NMSFQEKSAEGKSAQVFGMALLFVFLILAAQYESWKLPFSVLLGTPWAVMGAMLGLWL
                     ARLMLGESYVNNVFAQIGLVMLIGLNAKNAILIVEFAKMKMEEGQDAFSAAIDGAKLR
                     FRPILMTSFAFILGVVPLLTAYGAGAEARKVMGMAVFAGMITATTIGVILIPSFFVLI
                     ERKKKKDKLAAAVPPPAANDHGHETSPSA"
     gene            3755..>4327
                     /locus_tag="VLL95_11405"
     CDS             3755..>4327
                     /locus_tag="VLL95_11405"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSR39512.1"
                     /translation="MRSIPKKISLLLLAGALLALEGCLVGGKMDKPVVSQTPEQYPQF
                     TGKVDTLTVLRWFEIYQDTVLQRLIRTTIDSNRNLMIAAARVEQSREIAGFIKANLYP
                     QLGYSAQAGGGQAGTEAQKVAGGLDKGVFKGFATLNWEIDLWGRIRHANLAFYNEYLG
                     DIENRNALLVSLVAEVANQYFVLCDLDNRLA"
BASE COUNT         1149 a         1088 c         1085 g         1005 t
ORIGIN      
        1 attccccatt tcagaaagcg actacctgcg ctttgcgaaa agggcaaaag agaaaagcga
       61 tgccagcaat gccacccgtg aattcccggt agaactggtt ttgagtgata actccatttt
      121 caatgaaatt ggtaagatgg acctcgccaa ccggcaaatt gacccgcaaa ccggatcact
      181 cactttgcag gctgtgtttc aaaacaagga acggttactg cgccccggcc agtatgtaaa
      241 agtgcgcctc aaaacagatg agtacaagga cgccgttatg gtgccacaaa gtgccatcaa
      301 ccagttgcag ggtatttacc aggtattcat tttgggcgat agcagcaaac tcaaacccag
      361 aataattgta cccggcgacc gggtgggtag caactggatc gtcaaggaag gaatacagga
      421 aggtgaaaaa gtagccatta tcggcaatgc tggaatcaat ccgaaaaacg ctgtgaaacc
      481 aatcatgatc aattggaatt acgattctac cagtcgcaaa taatctttct gcacaagtaa
      541 caaccaataa ccgcactttt tatgagtgaa ttttttatac ggcgaccaat agtagccatt
      601 gtaatatcca aatttactgt gctgctgggt ttcctgacgc tccgcggaat accgattgca
      661 caatacccag agattgtgcc gcccatgatc aagatcacgg gcacttacaa tggcgccaac
      721 gctgtaaacg ttgaacaaac cactgcaact cccatagaac agcaagtgaa cggcgtggag
      781 aacatgctgt acatgcagtc catcaatggt aatgatggca ccactaccat caatgtgtcg
      841 tttgaagtag gtaccaacct tgacaacgcc aacatgctta cccaaaaccg ggtggccatg
      901 gcaaacccgt tcctgcccaa cgatgtaaag gccatgggtg ttaataccaa gaaagcactg
      961 gctttcccac tgatgatcat ttctctttac tctcccaagg caacctatga tgcccggttc
     1021 gtggtcaact attgctacat caatgtgatt gaccagatca agcggataaa gggggtgggc
     1081 gacgtggtgg tgtttggtgg ttctgaatat gccattcgta tctggctaaa gcccgatcgc
     1141 atgtctgcct acaacatcag cgtgaacgac gtgaagaagg ccatgagcca gtacaacaac
     1201 atttaccccg gaggctcttt tggcaacaac cctgcattac ccggagtaca aaacacttat
     1261 acagcgcagc tccagagtcg cttatccgac ccgaatgaat tcagcaagat cattatcaag
     1321 tccgacagga caggtgcatc ggtgaagctg tctgatattg cccgggtgga actgggtact
     1381 gaaaacttct tccagaacag ccgcctgaac aagcaaaatg caggcgctat tgcgatatac
     1441 cagatacctg gcagcaacgc tattgatgta gcggaagaga tcaagaaaac catgaccgaa
     1501 ttggaatcac gctttccgca agacatggcc taccgggttt ctcttgatac gaccattcct
     1561 atcgaagtgg gtatagaaga aattatgcat acccttttcg aagcagtatt gctggtgata
     1621 ctggtggtct tcatcttcct gcaagactgg cgggctaccc tcattccttt gcttaccgta
     1681 ccagtttcgc tggtgggcgt attcatattc ttcccgttaa tgggtttttc cgtcaacgta
     1741 ttgtcgttgc tgggccttgt acttgctatt gggttggtgg ttgatgatgc cattgtggtg
     1801 gtggaagcgg tgatgcacca tatggaacat ggcaaaagtc ccaaggaggc aacccaaatt
     1861 gccatgaagg aggtggcagg ccctgttatc gccatcgcca tcatcctggc tgctgtgttc
     1921 ataccagtgg cgctgatgcc cggtatcaca ggccggcttt accagcagtt cgccattacc
     1981 attgcggtat cggtattgct atctgccttc aacgcactta cgctcagtcc tgctcttgcc
     2041 gcaatgattc tgaagccaaa gaatcccaat gcgaaaggac tgctgacaaa attcttcggt
     2101 tggttcaacc ggggcttcga caagttcacc aacggttatg tgaaggtggc agggtttttt
     2161 gcccgaaaac ttgtgatcag ccttattgtt ttgggaggta ttgtttttgg tgcaggctac
     2221 ttcaccaaag ctgtacccgg tggatttgtg cctgaagaag acaatggcta tttcattatg
     2281 ggcatcttcc tgcccgatgc cgcgtcattc gaacgtacgg atgcagtctc caggaaagta
     2341 gaagacattc tggctaacac cgatggcatt gagagttaca ccctgatcaa cggcttcaat
     2401 atcatgaacc aggtggtttc tcctaatacg tctaccttgt tcgtgcaatt gaaagattgg
     2461 tcagaaagaa aaacagacaa ggagatactg cgggaattga atgtaaggct ggcgaaagaa
     2521 attacggaag caacagcaat cgctgtcggc cctcccgcca ttccgggcct gggcacaggc
     2581 gcaggcttta ccatgcaaat tcaagaccgt gccggtggaa gcccccagga actggcgagg
     2641 caaacacaga gattcattat ggcagcacgg gagcgccctg aaataggtag tattttgtca
     2701 ctgttcagaa gcgatgtacc ccaaaaatcc attaaagtag acaaggataa ggtggagaaa
     2761 acgggactga cccttgatga agtgaactct accatttcaa ccatgctggg tggttcattc
     2821 gtaaacaact tcaacgcatt cgggcgccag taccgcactt acatgcaggc cgatgccgaa
     2881 ttccgtatga agcccaacga cctggagcag atttacattc gggatgcaaa aggcagtatg
     2941 gtttcgttag gtacccttgc cagggtaaca gataccactg gaccacagta taccaaccgc
     3001 ttcaaccttt accggtcggc agaagtatcg ggcacacctg caccgggcta cagctcagcc
     3061 caggcactgc gggcattgga agaagtcgcc gcccaaacac ttccttctac catcggctac
     3121 cagtggtcta atatgagctt ccaggagaaa tctgcagaag gcaaaagcgc ccaggtattt
     3181 ggcatggcgc tgctgttcgt attcctgatc ctggccgcac aatatgaaag ctggaaactc
     3241 ccattcagtg tattgctggg aaccccttgg gcagtgatgg gagccatgct tggattgtgg
     3301 cttgcccgat taatgttggg cgaaagctat gtgaacaacg tattcgccca aattggcctg
     3361 gtaatgctta tcggtttgaa cgccaagaac gccatcctga tcgtagaatt tgccaaaatg
     3421 aaaatggaag aagggcagga tgctttttct gctgccattg acggcgccaa actgcgtttc
     3481 cggccgatcc tgatgacttc attcgctttc atcctgggtg tggtaccact gctaacagcg
     3541 tatggagcag gtgcggaggc cagaaaggta atgggcatgg ccgtgtttgc cggtatgatc
     3601 accgctacca ccattggagt tatactcatc cccagcttct ttgtgctcat cgaaagaaag
     3661 aagaagaaag ataaactggc tgccgcggtt cctccgcctg ctgccaatga tcatggacat
     3721 gaaacctcac cttcagctta aatacaaacc tgttatgcgt tcgattccaa aaaagatatc
     3781 actgcttctg ctggctggcg ccctgctggc cctggaagga tgcctggtgg ggggcaagat
     3841 ggacaaaccg gtggtgagcc agacacctga acaatacccg cagtttaccg gcaaagtgga
     3901 tacccttacc gtgctccggt ggttcgaaat ttaccaggac acggtgctgc agcgcctcat
     3961 ccgcaccacc atcgacagca accggaacct gatgattgca gcggcccggg tggaacaatc
     4021 cagggaaata gccggattca tcaaggccaa cctctaccca cagctgggct attcggcaca
     4081 agccggtggc ggacaggctg gcaccgaagc gcagaaagtg gccggtggtc tcgacaaggg
     4141 cgtattcaaa ggctttgcca ccctcaactg ggaaattgac ctatggggcc gcatcaggca
     4201 tgccaacctg gctttttaca atgaatacct gggcgatata gaaaaccgaa atgcactgct
     4261 cgtaagcctg gtggccgaag tagccaacca atattttgtg ctctgcgacc tcgacaaccg
     4321 gctggcc
//
LOCUS       DATIQF010000673         2916 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_56506, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000673 DATIQF010000000
VERSION     DATIQF010000673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2916)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2916
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56506"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..388)
                     /locus_tag="VLL95_11410"
     CDS             complement(<1..388)
                     /locus_tag="VLL95_11410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39513.1"
                     /translation="MLKAASIAELKAELQNLPQEELVAICLRLARFKRDNKELMGYLL
                     FEAHQPDIYAEHVKQMMTDEFAAVNTANIWFAKKSIRKILRLANKYAKYAGSKELEVQ
                     LHIHFLLQLKQLPGHITSAPIMDKLAR"
     gene            491..1201
                     /gene="trmB"
                     /locus_tag="VLL95_11415"
     CDS             491..1201
                     /gene="trmB"
                     /locus_tag="VLL95_11415"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: protein motif:HMM:NF001080.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HSR39514.1"
                     /translation="MGQKKLIRFAAIKEFSNVVEYPENMAGQWSGFFARAQPLTLELA
                     CGKGEYAVGLGRLHPEKNFLGVDVKGNRIYVGAKTALQEGLDNVGFMRTQIDRIDQYF
                     APGEVSEIWLTFPDPQLRYSRAKKRLTHPNFLRKYQQFLQPGGLIHLKTDSPLLYHFT
                     CMVSEHYGGTMVTQYNDVYSQATEPELLNIKTHYEGLDIAQSGKIHYVCFRLPAEIKK
                     ELDASFAEKVREKEFKPE"
     gene            1221..1418
                     /locus_tag="VLL95_11420"
     CDS             1221..1418
                     /locus_tag="VLL95_11420"
                     /inference="COORDINATES: protein motif:HMM:NF037605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5522 domain-containing protein"
                     /protein_id="HSR39515.1"
                     /translation="MKFGLVEGEDYYYNEEGYIVLTEKYHLDRGSCCGNGCQHCPFNY
                     EMVPEPRRQQLREAKKKKAQQ"
     gene            complement(1497..>2916)
                     /locus_tag="VLL95_11425"
     CDS             complement(1497..>2916)
                     /locus_tag="VLL95_11425"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HSR39516.1"
                     /translation="AVPGVKDVFKVSMPVFGFTREGVAVVATSTWAALQGRKSLKVTW
                     DDTGIEILSTDALYKRMRADLDKPGNSVRTAGNFADNFLTAEKKVEAIYQTPYQSHAC
                     MEPINCVAHWQPDKVEIWGPIQGPDWVQSDIADRLKIKPEQVIVNMTFLGGGFGRKAF
                     TDYTAEAVFISKAVKAPVKVTWTREDDMTQGPFRPGAMYKLQAGLKGSRIQSYAMKMA
                     AQNMDLQDSPRFDKKAFNPNTIEGLCEPYMQAFRHNSFSDIPTVSPIPVMWWRSVYAS
                     TNGFAYESFMDECAIAAGKDPLDFRKSHLPNERHQAVLDKLAEISNWKSRGKNSGWGI
                     AITECFGSITGEAVKVGKAPEGGLRVEKVFAVMDCGWYVNPDIIRAQVEGSIYMAYGA
                     ATTHETTFADGKAVEDNFNSYNLPRIGDVGEIVVHIMENEEKPGGVGEPALPPFAPAM
                     CNAIFDLTGKRIRKLPFNMQAL"
BASE COUNT          700 a          769 c          712 g          735 t
ORIGIN      
        1 atctcgccaa tttgtccatg atgggagctg atgttatgtg cccgggcagt tgcttcaact
       61 gaagtagaaa gtggatgtga agttgcactt ccaactcttt gctgcctgcg tatttggcat
      121 acttgttggc cagcctcagg attttccgga tcgatttttt ggcaaaccag atattggccg
      181 tattcaccgc ggcaaattca tccgtcatca tttgttttac atgctccgca taaatgtcgg
      241 gctgatgcgc ttcgaaaagc aggtatccca tcaactcctt gttgtcgcgt ttgaagcggg
      301 ccaggcgcaa acaaatggct accagttcct cctgtggaag attttgcaat tcggctttca
      361 gttcggcaat ggaagcggct ttgagcatag cgggaagtta tgagtttgat gcaaaagcaa
      421 cccctcaccc ctttaacatg tgaacttgtg aacccgtgaa cttgttaacc ccccttacct
      481 ttgccgccct atgggccaga aaaaactgat tcgttttgct gcgatcaaag aattcagcaa
      541 cgtggtagag tacccggaaa acatggcggg ccaatggagt ggcttttttg ccagggcgca
      601 gcccctcacc cttgagctgg cctgtggcaa aggagaatac gcggtagggc tgggccggct
      661 tcaccccgaa aagaatttcc tgggcgtgga cgtaaaaggc aaccgcattt atgtgggcgc
      721 caaaacggct ttgcaggagg gtcttgacaa tgttggcttc atgcgtaccc aaatcgaccg
      781 gatcgatcaa tacttcgctc ccggcgaggt aagtgaaata tggctcacct tccccgaccc
      841 ccagttgcgc tacagccggg ccaaaaaaag gctgacccac cccaatttcc tgcgcaagta
      901 ccagcagttt ttgcaacctg gcggtctcat acacctcaaa accgattccc cgctgctcta
      961 ccattttacc tgcatggtca gcgaacatta tggcggcacg atggttactc aatacaatga
     1021 tgtctacagc caggccactg aacccgaact gttgaacatc aaaacccact acgaaggatt
     1081 ggacattgca cagagtggaa aaatccatta tgtgtgcttt cgcttgcctg cggaaataaa
     1141 gaaagaactg gacgcatcat ttgcagaaaa ggtgagggag aaggagttta aaccggagta
     1201 accaaacatt ggtgcaacac atgaaattcg gattggtaga aggcgaagac tattactaca
     1261 acgaggaagg atacatcgtc cttaccgaaa aataccatct tgaccgcggc tcctgctgtg
     1321 gcaacgggtg ccagcattgc ccgtttaatt atgaaatggt gccggagcct cgccggcaac
     1381 aactaagaga ggcaaaaaag aaaaaagcgc aacagtaatt cactaccact atcctttgaa
     1441 aattaaaata cccgctaacc taaggttgcg ggtatttgct ttttacaagt gaatctttac
     1501 aaagcctgca tgttgaaggg cagtttgcga atgcgcttgc ctgtcaggtc gaatatggcg
     1561 ttgcacatgg caggtgcaaa aggtggcagt gccggttcgc ccacaccgcc gggcttttcc
     1621 tcattctcca tgatgtgtac cactatttct cctacgtcac caatacgtgg caggttgtac
     1681 gaattgaaat tgtcctccac tgctttgccg tcggcaaatg tggtttcatg ggtggtagcg
     1741 gcgccataag ccatataaat acttccttcc acctgcgccc tgatgatatc agggttcacg
     1801 taccatccgc agtccattac ggcaaatact ttttccaccc gcaggccgcc ttcgggagcc
     1861 ttgcccactt ttaccgcttc gcctgttatg ctgccaaaac attcggtgat ggcaataccc
     1921 cagccactgt tctttcccct gctcttccaa ttgctgatct cggccagctt gtccaatacg
     1981 gcctggtgcc tttcattggg caaatggctt ttgcggaaat caagcgggtc tttccctgcg
     2041 gcaatggcac attcatccat gaagctttca taggcaaacc cattggtaga agcgtatacc
     2101 gagcgccacc acataacggg aatgggcgat acagtcggga tgtcggaaaa gctgttgtgc
     2161 cggaaggcct gcatataggg ttcgcaaagc ccttcaatgg tgttgggatt gaaagctttt
     2221 ttgtcgaaac ggggagaatc ctgcaggtcc atgttctgtg cagccatctt catggcatag
     2281 gactggattc tgctgccttt caaacccgct tgcagtttgt acatggcacc aggcctgaaa
     2341 ggcccctgcg tcatatcatc ttcacgggtc caggttactt tcaccggcgc cttcacggct
     2401 tttgaaatga ataccgcttc ggctgtataa tcggtaaaag ccttacggcc aaagccgcca
     2461 ccaagaaaag tcatgttgac gatcacctgc tccggtttta ttttcagccg gtccgcgata
     2521 tcactttgca cccagtcggg tccttgtatg ggtccccata tttccacttt atcgggttgc
     2581 cagtgcgcca cacagttaat gggttccatg caagcatggc tctggtaggg cgtttggtaa
     2641 atggcttcca ctttcttttc agcagtcagg aagttgtcgg caaaattgcc ggcggtgcgt
     2701 acgctgttgc ccggcttgtc aagatcagca cgcatgcgct tgtacagggc atcggtgctt
     2761 aatatctcaa tgccggtatc gtcccaggtt accttcaaag attttcggcc ttgcaaagcc
     2821 gcccaggtac tggtggctac caccgccaca ccttcgcggg taaatccaaa caccggcatg
     2881 ctgaccttga atacatcttt cacacccggc accgct
//
LOCUS       DATIQF010000674         1806 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_71533, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000674 DATIQF010000000
VERSION     DATIQF010000674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71533"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..530)
                     /locus_tag="VLL95_11430"
     CDS             complement(<1..530)
                     /locus_tag="VLL95_11430"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HSR39517.1"
                     /translation="MKSHYQVLIIGGGTGGIMTAAQLKRKDRDISIGLIEPSKEHFYQ
                     PAWTLVGAGAFNFNKTRRAESTLIPHGVDWIQDYATTFQPDSNEVNTRNSGTISYDVL
                     VISAGIQMDLDALPGLREALQTDSVCSNYLDPEKTFEVLKKFKGGNAVFTQPATPIRC
                     GGAPQKIMYLAEEYFK"
     gene            complement(598..>1806)
                     /locus_tag="VLL95_11435"
     CDS             complement(598..>1806)
                     /locus_tag="VLL95_11435"
                     /inference="COORDINATES: protein motif:HMM:NF014871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009166 - nucleotide catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HSR39518.1"
                     /translation="ICANMFHDTKDDRKGELMFHPWWTKHFGNIKLGFIGYNDPLTPK
                     RQSPAYSEGIQFTKPEKNVARYVRHLRDYELCDMVFLVTHMGLAQQVDLANQAYVEGV
                     DFILGADTHERVREPIQAKYAKVTEPGAFGSFVAKLDLIVEDGKVKDTSYQLLDVDPD
                     RYKPDTGMLELVRKAREPYRAELDKVIGKTKTTLVRYYVLENPMDNLITDAIYWKFKP
                     DIALSNGFRFCPPMVPDAKTGTAEITNEFLWSMLPVDSDAKTGEITGEQLCDWLEKEL
                     HNVFAKNPAQRFGGWVVRFAGMEINFTAYNEMGKRLNWVKIKSAPVDLKKWYTIVACE
                     RDGDPDDNLCRVEHVSKAKKLGYTLHDIVREYLAVHSPVAPKVEKRVTATDVPKDLLS
                     QLEGYSYTFR"
BASE COUNT          360 a          499 c          478 g          469 t
ORIGIN      
        1 ttcttgaagt attcctccgc caggtacatg attttctgag gggctccgcc acagcggatg
       61 ggtgtggcag gctgcgtaaa gaccgcgttg ccgcccttga atttctttag tacctcaaag
      121 gtcttttccg gatccaggta attgctgcaa acgctgtctg tctgcaatgc ttcccgaagc
      181 ccgggcaggg cgtccaggtc catctggatg ccggcactga tgaccagtac atcgtaagat
      241 atcgttccgc tgtttcgggt attcacttcg ttgctgtctg gctggaaagt ggtggcgtaa
      301 tcctgtatcc agtccacacc atgaggaatc agcgttgatt cggccctgcg ggtcttattg
      361 aaattgaatg ctccagcgcc cacgagcgtc catgcgggct ggtaaaaatg ttccttgctc
      421 ggttcaataa gaccaataga aatgtcgcgg tccttgcgtt tgagttgggc ggctgtcatg
      481 atgcctcccg tgcccccacc gatgatgagc acctggtaat gggatttcat gtgtgttgat
      541 ttgttgcaag gctaaaggta ccaagcaccc cattcgcaaa cagtgaccag gatcacatta
      601 ccggaatgta tatgaatatc cctccagctg ggagagaaga tccttgggta catcggtggc
      661 cgtcacccgc ttctcgacct tgggagccac ggggctgtgc accgccaggt attcccggac
      721 aatatcatgc agggtgtaac caagtttttt cgccttgctc acatgctcaa cgcgacaaag
      781 gttgtcgtcc gggtcgccat cccgctcaca ggccacgatg gtataccatt tcttcaggtc
      841 cacgggcgcg cttttgattt ttacccagtt caggcgttta cccatctcat tgtaggcagt
      901 gaaattgatc tccataccag caaaacgcac tacccatccg ccaaaacgct gtgccgggtt
      961 tttcgcaaat acattgtgca gctccttttc cagccagtca caaagttgtt ccccggtgat
     1021 ctcgccggtt ttggcgtcgc tgtccacggg cagcatgctc cacaggaatt cattggtgat
     1081 ttctgccgtg ccggttttgg cgtcaggcac catcggcggg caaaagcgga aaccgttgct
     1141 cagggcgata tccggtttga atttccagta gatcgcatcg gtgatcaggt tgtccatcgg
     1201 gttttccagc acgtagtagc gcaccagggt ggtctttgtc tttccaatga ctttgtcgag
     1261 ttcggccctg tatggctcac gcgccttgcg caccagttcc agcatcccgg tatcgggctt
     1321 gtaccggtcg gggtccacgt cgagtagttg gtagctcgtg tctttgacct taccatcttc
     1381 cacaatcagg tccagcttgg ccacaaagga cccgaaggcc ccaggttccg tgacttttgc
     1441 atatttcgcc tggatcggtt cccggacacg ctcgtgcgta tccgcgccta ggataaagtc
     1501 cacgccctcc acgtaggcct ggttggcaag gtccacctgc tgggcaagcc ccatatgggt
     1561 aaccaggaaa accatgtcgc acaattcgta atcacgcaga tgcctgacat aacgggccac
     1621 gtttttctcc ggtttggtga actgtatgcc ttcgctgtag gcgggcgatt gccgcttggg
     1681 cgtcagcggg tcgttatacc cgatgaaacc cagtttgatg ttgccgaaat gcttagtcca
     1741 ccagggatgg aacatcagct cccctttgcg gtcgtctttt gtatcgtgaa acatattcgc
     1801 gcaaat
//
LOCUS       DATIQF010000675         4764 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_223752,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000675 DATIQF010000000
VERSION     DATIQF010000675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4764
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223752"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..921)
                     /locus_tag="VLL95_11440"
     CDS             complement(<1..921)
                     /locus_tag="VLL95_11440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39519.1"
                     /translation="MKPLLTLGLGIISLATQAQLTVQSGATLFIDAGASVTVQGDLVS
                     NANITGTGKIIMKGTALQNLNMNGFTIPNLDIDNTNNVALGGETKVSGVLSFVNGKLQ
                     LGNYNFVLAGSGSYAGAGAGKFAETNGTGEFRDEVSAVGSVTLPVGVGADYNPVTFQL
                     AGNTFSSAWVGARAVSGGHPAKHPRSSDLLNHYWALSQSGVSGGTITTSGTYVDGADV
                     TGTESFLNAMTYNGSAWSLGTSVDNGTNTVTAPMSGASSQLYAMNKFVLVTPKVFLQG
                     AYNSGTGLMNDTYRTPTNIIPTSDPYRDPVF"
     gene            1218..2432
                     /gene="odhB"
                     /locus_tag="VLL95_11445"
     CDS             1218..2432
                     /gene="odhB"
                     /locus_tag="VLL95_11445"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: protein motif:HMM:NF004309.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045252 - oxoglutarate dehydrogenase
                     complex [Evidence IEA];
                     GO_function: GO:0004149 - dihydrolipoyllysine-residue
                     succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HSR39520.1"
                     /translation="MAVTIKVPSVGESINEVTLVKWLKPEGAWVERDEVIAELESEKA
                     TFEINAEQAGILHQVAKENDTLNIGDVACEIDTEAARPADAPVAAPVENKEVAAAAPP
                     AASAARQEDVKATPVAAAILADKKVDPKTVTPSGTKGRILKQDVLAAITKPGRAPQKA
                     EFSREDRPEKMSNLRKTVSRRLVEAKNTTAMLTTFNEVDMSRIMELRKQYKDAFQKMH
                     GVGLGFMSFFTKACCYALQEWPAVNAYIDGDSIVYHEYCDISIAVSAPKGLVVPVIRN
                     AESLSMAEIEQKVVELATKARENKLTIEEMTGGTFTITNGGVFGSLMSTPIINIPQSA
                     ILGMHKIQERPVAINGKVEVRPMMYLALSYDHRIIDGRESVSFLVRVKELLENPELLL
                     FGKDPVKTLLEL"
     gene            2489..3634
                     /locus_tag="VLL95_11450"
     CDS             2489..3634
                     /locus_tag="VLL95_11450"
                     /inference="COORDINATES: protein motif:HMM:NF013362.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HSR39521.1"
                     /translation="MSRYHSYLNSAEKLIHNYKGDVPFSIFIKQFFAANKQMGSRDRK
                     AISQLCYQVFRLGHFLKSEPAFKRIIEAAVIFAEQNAEFLKALDIDTGNEKQALDEGS
                     LDEVFPFAVMLSEQVDKPAFQQSILQQPDLFLRIRPGAKDKVLQALETNSVPFKLLSE
                     NSVSVPTGTDVAAFLPLNRWAVIQDWSSQKTGEIMAEIFNQHQFKPDKIWDCCAASGG
                     KSIMLHDLFPEARLTATDVRESILGNLQTRFEQAGIKRYETFVADLTLKQQRMLGSPF
                     DLVIADLPCTGSGTWARTPENLVFFEKEMAADYASRQYAIANEALRWLRPQGYFVYIT
                     CSVFAEENEKVVEKLLGSGSLKLHRQQLIPGWHQHADSMFIAVMQKA"
     gene            complement(3635..4312)
                     /locus_tag="VLL95_11455"
     CDS             complement(3635..4312)
                     /locus_tag="VLL95_11455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39522.1"
                     /translation="MQSPALSDYFPLQTGKYITYRLDSTVTTAFGADTTVRSYRVRDN
                     VDAQIKDGLNRTAYRVVRTISNLAGTQPYVPNNTFSATPVGEDWIEWNENNLRFMKLR
                     FPILENTTWKGNSFIDATSLNSSLDYLANWNYVYQNIGQPFKVLGKTYPETVTVLQQD
                     EVLPPGPFNPNVYKQYNYSIEVYAKGIGLIYKNFDHKEWQPPSSGRPGYWEDGSYRVV
                     LQIIDNN"
     gene            complement(4490..>4764)
                     /locus_tag="VLL95_11460"
     CDS             complement(4490..>4764)
                     /locus_tag="VLL95_11460"
                     /inference="COORDINATES: protein motif:HMM:NF042466.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminomethyltransferase beta-barrel
                     domain-containing protein"
                     /protein_id="HSR39523.1"
                     /translation="TVVLGDEEDLNRSEMTVTKLNWLKYDGVTDGIEAITKIRYKDKG
                     SLSNLYTADGNIRVHFYEEVKGIAPGQSAVFYEGNDVIGGGIIQRY"
BASE COUNT         1253 a         1143 c         1191 g         1177 t
ORIGIN      
        1 aaagacagga tccctgtaag gatcagaagt tgggataata ttggtagggg ttctatatgt
       61 atcattcatc aaccccgtac cagaattgta tgcaccctgc aaaaatactt tcggtgttac
      121 caacacaaac ttattcatcg cgtacaactg gctgctggcg ccgctcatgg gagcggttac
      181 cgtgttggtg ccattgtcaa cagaagtacc aaggctccag gcagaaccat tataggtcat
      241 tgcattcagg aaagattcgg tgccggtcac atcagcgcca tccacatagg tacctgatgt
      301 ggtgatggta ccgccgctaa cgccactttg gctcaacgcc cagtagtgat tcaacaagtc
      361 agaagaccgg gggtgtttgg ccgggtgacc accggaaaca gcacgagcac ctacccaggc
      421 gcttgaaaag gtattgcctg ccagttggaa agtgaccggg ttgtagtcgg cacctacccc
      481 aacgggaagg gtaacactgc ctacagcgct tacttcatct ctgaattcgc cggtaccatt
      541 ggtctcggca aatttgcctg caccggcgcc agcgtagctg ccgctgcctg caagtacaaa
      601 gttgtagttg ccaagctgga gtttgccatt tacaaaactc aacactccag acaccttcgt
      661 ttcgcctccc agcgccacgt tgttggtgtt gtcaatgtca aggttgggga tggtaaaacc
      721 gttcatgttc aggttctgca gggcagtacc tttcatgatg atcttgccgg tcccggtaat
      781 gtttgcgttg ctaacaaggt cgccctgaac ggtaacggag gcgcctgcat cgataaacag
      841 ggtagcaccg ctttgcaccg ttagctgggc ttgtgtggcc agggaaatga ttccaagtcc
      901 gagggtcaat aatggcttca tattgaaact tttaggctaa gttttgctaa gatatagttg
      961 ccataggaat ttttcgaaca aatctgctgt attgtgtgat atgtttaatg aatgggggca
     1021 aatagttact gaagtgtgta ctcaatttac gcagaatatg ccggttttta cctgatttta
     1081 gccggctggc ccaaagaata ccagtcaaaa atccctaccc atatccaacc ccttcaggag
     1141 ggttctcctg cggctttttt tcgcttttgc catacaccat ttttccccac ctttgccacc
     1201 tcaaaaaacg gaagtcaatg gcagtaacga taaaagttcc atcagtaggg gaaagcatca
     1261 atgaggtaac attggtgaaa tggctgaaac cggaaggggc atgggtagaa agagatgaag
     1321 tgatagcgga actggaaagt gaaaaagcca ctttcgaaat caatgccgaa caggcgggca
     1381 tactgcacca ggtggccaag gaaaacgata ccctcaatat cggtgatgtg gcctgtgaaa
     1441 tcgacaccga agctgcccgt ccggccgatg cgcctgttgc tgccccggtt gaaaacaaag
     1501 aagtggccgc tgccgctcca cccgcggcat ccgctgccag gcaggaggat gtgaaagcca
     1561 ctcccgtagc cgccgccatt ttggccgata aaaaggtgga tcccaaaaca gtgaccccca
     1621 gcggtaccaa gggccgcatc ctgaagcagg atgtgctggc cgccattacc aaacccggcc
     1681 gggctcccca aaaggcggaa ttcagcaggg aagatcgccc tgagaaaatg agcaacctgc
     1741 gcaaaacagt aagtcgcaga ctggtggagg caaagaacac tactgccatg ctgaccactt
     1801 tcaatgaagt ggacatgagt cgcatcatgg aactcaggaa gcaatacaag gacgctttcc
     1861 aaaagatgca cggagtaggg ctcggtttca tgagcttctt taccaaagcc tgctgctatg
     1921 ccctgcagga atggccggca gtaaatgcgt atatcgatgg cgacagcatt gtgtaccacg
     1981 aatactgcga catctctatc gccgtaagcg ctcccaaagg tttggtggtg cctgtaattc
     2041 gcaatgccga gagcctgagc atggcagaaa ttgaacagaa agtagtagag ctggcaacca
     2101 aagcccgtga aaacaaactg acgatcgagg aaatgacggg aggcactttc accattacca
     2161 atggcggcgt gttcggtagc ctcatgagca cacccattat caatattccg caaagcgcca
     2221 tcctggggat gcacaaaata caggagcgcc cggtggccat caatggcaag gtggaagtgc
     2281 gccccatgat gtacctcgca ttgagctacg accatcgcat catcgatggc cgcgaatcag
     2341 tgagcttcct ggtaagggta aaagaattgc tggaaaaccc tgaattgctg ctgtttggca
     2401 aagatccggt gaagaccttg cttgaactgt aaatacaatc gctgaactta ctttgagtgc
     2461 cggaaatttc cggcactttt gtttttatat gagtcgttat cacagttatc tcaatagcgc
     2521 cgaaaagctg atccataatt acaagggcga tgtccctttc tccattttca tcaagcagtt
     2581 ttttgcagcc aacaagcaaa tggggagccg cgacaggaaa gccatatcac aactgtgcta
     2641 ccaggttttc aggctgggac attttttaaa aagcgaacct gctttcaaac gcataattga
     2701 agcagccgtc atatttgctg aacagaatgc tgaattcctg aaggctttgg atatagacac
     2761 gggtaatgaa aagcaagcat tggatgaagg cagtttagat gaagtgttcc catttgctgt
     2821 tatgctgagt gagcaggttg ataaaccggc atttcagcaa tccattttgc agcagcccga
     2881 tttgtttctg cggatccgtc cgggtgccaa agacaaagtg ttgcaggcgt tggagaccaa
     2941 ctcggttcct ttcaaacttc tttcagagaa tagcgtcagc gtgcctactg gtaccgatgt
     3001 agctgccttc ctgccactga atcgatgggc ggtcatccag gattggagca gccagaaaac
     3061 aggtgaaata atggccgaaa tattcaatca gcatcaattc aagcccgata aaatctggga
     3121 ctgttgtgcg gccagtggtg gcaagagtat catgctccat gatctttttc ctgaagccag
     3181 gctaactgcc accgatgtga gggaaagtat tttaggaaac cttcaaaccc gttttgaaca
     3241 ggcagggatc aagcgatacg aaacctttgt cgcagacctt accctcaaac agcagcgcat
     3301 gcttggatca cctttcgatt tggtgattgc ggatttgcct tgcactggca gcggcacctg
     3361 ggcaagaaca cctgaaaacc ttgttttctt cgaaaaggaa atggctgcag actatgccag
     3421 ccgccaatat gccattgcca atgaggcctt gagatggttg cggccccaag ggtattttgt
     3481 gtacatcacc tgttcggtgt ttgccgaaga gaatgaaaag gtggtggaaa aacttttggg
     3541 ttcaggttct ctaaaattgc atcgccaaca acttatcccg ggttggcatc agcatgcaga
     3601 cagcatgttc attgccgtca tgcaaaaagc ctgatcagtt gttgtcaata atttgaagta
     3661 ccactcgata actgccatct tcccaataac ccgggcgtcc actcgaaggc ggctgccatt
     3721 ctttgtggtc aaaattcttg tagatcagtc ctatgccttt ggcatatact tcaatgctgt
     3781 aattgtattg cttgtaaaca ttgggattga aggggccggg aggcaacact tcatcctgct
     3841 gtaaaaccgt taccgtttcc gggtaggttt ttcctaatac tttaaagggc tgtccgatgt
     3901 tctggtaaac atagttccag ttggccaggt agtccagtga tgaattgagc gaagtggcat
     3961 caatgaaact gttgcctttc caggtagtgt tctccaaaat ggggaagcgc agtttcatga
     4021 agcgcaggtt gttttcattc cattcaatcc agtcttcgcc taccggcgta gcgctgaaag
     4081 tgttgttggg aacatagggc tgggtgccgg ccaggttgct gatggtacgc accactctat
     4141 acgcagttct gttgagaccg tccttgattt gagcatctac attatcgcgt acccggtagc
     4201 tccttacagt ggtatcagca ccaaaggcgg tggttacggt actgtccagc cgataagtga
     4261 tgtacttgcc ggtctgaagg ggaaaataat ccgacaaagc cggtgactgc atctcgattg
     4321 ttttttcagt acaggacgca aaaaataccc cagtcaagag caaaagagac agataagtaa
     4381 gatgcttggt tggcttcata taatttaaaa acgactggta tcttttgttt ggtatgaaaa
     4441 atcgggtggt ttcaaaaata ggaaacccct gccatgcacc cggcaggagt taataacgtt
     4501 gaatgattcc tccgccaatc acgtcattcc cttcgtaaaa cacagcgctc tgtccgggcg
     4561 caatgccttt aacctcctca taaaaatgca ccctgatgtt gccatcagcg gtgtaaaggt
     4621 tcgaaaggct acccttgtct ttgtacctga tcttagtgat agcttctatg ccatcggtca
     4681 cgccgtcata cttcagccaa ttcaacttgg ttaccgtcat ttcagatcgg ttcaggtctt
     4741 cttcgtcgcc cagtaccacc gtat
//
LOCUS       DATIQF010000676         9062 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_86781, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000676 DATIQF010000000
VERSION     DATIQF010000676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 9062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9062
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86781"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2133
                     /locus_tag="VLL95_11465"
     CDS             <1..2133
                     /locus_tag="VLL95_11465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39524.1"
                     /translation="NYWDYIFRNASGTDNNISISGGTDRTKYFASGSFFFNQGIVQNT
                     DFRRASFRVNVDQTINSKLFMQAGLNYVNSFANERPDGNSFFSPMNSVTILGNFHNIW
                     QRDVNGNLQAVGERGRINPVSVVEDFKQTNETSRIIGNFGLKYRPMKGLTIDYLLGLD
                     NYTQIGNTFIPPYTYNANPAFWGGGPTLDPTQNGYASAATNYFRGLNNELNATYTFNI
                     TDNISSITQVGYQSQYEMNKYLMAQGRGMAPGVQTVNGASTLLPGVDSRSEFWLQGIY
                     LQQNFKVGNQFFLTGAVRRDGSSAFGKNERNQTYLKASGSWVISEGDWWSKMFGDFWN
                     LAKVSAAYGQSGNLTGIGPYDRYNTYTTNPFLSRTSMQSRSRLANENVRPERQDEIEI
                     GTDMAFLSNRIGLTFNYYVKKVDDLLIERTIAPSTGFSSLLDNYGKLENRGFEILVNA
                     SPIRNKKFSWDITGIYNQNRNKAVNIGQSLILLSTNAGAPVAIIQDQPVGVFYGTFFA
                     RDNNGNQIKNSAGIPLTERGIQNSVTTYTPQRDANGLPSGSVLRRIIGDPNPDYTASL
                     INTFTYGKLSLRVQFDAVKGVDVWNADWRTRQGVGNGEVAEQEHNGKLPRGYISGVYA
                     IEEWRIDDGSFTKLREIYLSYMFGRVGKAFRDLTVYASGRNLVSWDNYKGFDPEVNAG
                     GQSTVLRGIDFGPVPIPKQFSIGLNAKF"
     gene            2151..3452
                     /locus_tag="VLL95_11470"
     CDS             2151..3452
                     /locus_tag="VLL95_11470"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSR39525.1"
                     /translation="MKKNTFKNIMYSSAMLATIVMGTGCSKDYADPNNPTTESAFSTV
                     RGITAVSVGLQRIYTAGRASNLYNRVTIDGFTTNQFIIVNRGNTAEDQLERGGAIVDG
                     TNTMLLGLWTSSNKIIYDADNVLEAAANIGDKGYQSGLIGYTTIFKALALGDLAMFWE
                     KIPDGNGQNVAFINRVDGFNRAVTEIDKALNAIAANPISSSFAANIPAGVDITNTLRA
                     LKARFLLFAGKYAEALTAANTVDLTRKSTFNFDGVTPNSIFETATATNNVYQPIDSTL
                     GLLGALKPDLADKRVPFYTTISASLPRFRIKGFADANTAQFPLFLPGEITLIRAECLA
                     RQSSPDLAGAQAALNSVITKTTDLYGVAAGLPPITDPLTQSQLLDQIYRNRCIELYMS
                     GLKLEDMRRFGRPDSEKRRNLMPYPFRERDNNPNTPADPPF"
     gene            complement(3508..4005)
                     /locus_tag="VLL95_11475"
     CDS             complement(3508..4005)
                     /locus_tag="VLL95_11475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39526.1"
                     /translation="MKLIKLALISIVVFTVLLWGITLMFPSNTVISRAANIHGSADSL
                     FKKVKTNEISLTSILAATNNGVSLQAADIPFYEDNLFNALNQSAVPAADTLFFRLSYG
                     GKAIAEGGMAFYQLVPDSATTQVFYVFQTPWYQPLKKMKMMVADKVYGPGLDSALLRL
                     KNKMQ"
     gene            complement(4039..5151)
                     /locus_tag="VLL95_11480"
     CDS             complement(4039..5151)
                     /locus_tag="VLL95_11480"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR39527.1"
                     /translation="MKKNYNQWVAMLAISKGALKAIFRSPSAVLFSIAFPLIFILVFG
                     FIGGGGGIPNYRIVLAKDCDTTNSVIAALKTIPNVKFITPASDKELESDLKKGRITGV
                     LGVYKNSPSDSLAPYRITFQSTTASGDKLSTFLPFMENVVNKIDDQLYPGRKSYARFD
                     DPQITEVRKYRTIDFILPGQLGFSLLSAGVFGVAFLFFNLRQTLVLKRFYATPIHRTF
                     IVLGEGLARVVFQLVTAVVIIGIGTFAFKFTLVNGWITFLEILVLSFIALLVFMGFGF
                     IVSGLAKNESSIPPFANLITLPQFLLAGTFFNIDVFPTWLQPFCRILPLTFFNDAMRK
                     IAFEGAHLSDTAYEIGVIMLWGVVVYAVAVKVFKWE"
     gene            complement(5223..6986)
                     /gene="sppA"
                     /locus_tag="VLL95_11485"
     CDS             complement(5223..6986)
                     /gene="sppA"
                     /locus_tag="VLL95_11485"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HSR39528.1"
                     /translation="MRSFLKIFFASLLALVIFFLILLAAGVGLVSSAVSEEKPEIKAR
                     TVLVIDLNRPIMEQRVEEGFGLLEGQTPSLNGLYDIERALDAAATDTAVKGVYLIGGN
                     NPNGFATSQELRHSLKQFKNSGKFIVAFANDMNQRAYEVVSISDEIYLNPVGGMSWQG
                     YSYQLAFFKATLDKLEVKPEIFYAGQFKSATEPFRYTKMSDPNREQMTAFVESLYQQF
                     LLNTSKDRGIDTARLRMLATELRMHNASDGVREKLVDDAQYDDEVKSKIARRIGAPGI
                     DKINFMTIGDYIKAYHKPERKKDLIAVIYAQGDIVDGNSTDGMIGGDGFRQLVRKARL
                     DKNVKAVVLRVNSPGGSAVASEVIHRELSLLQKEKPLVVSMGDYAASGGYYISCGADS
                     IFAQPNTLTGSIGVFAMLFDVSKMMSNKLGITFDEVNTAPSATLGSPFRPLTDKERKY
                     LQEDVDSIYATFKARVAVVRQLKPEMVDSIAQGRIWSGTAAVKNGLVDRLGGMQDAVA
                     CAARLAKLKEYSLKEWPVVEPFFEKLFGKKKDEQIQMAWHVKQQMGPTFYYLWKQMEQ
                     LRQMQGRVQMRLPFFAAPQGL"
     gene            6985..7557
                     /gene="folK"
                     /locus_tag="VLL95_11490"
     CDS             6985..7557
                     /gene="folK"
                     /locus_tag="VLL95_11490"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HSR39529.1"
                     /translation="MMMTVIRNDSDGPKIRIFAPQQRKRYMNRAYLLTGGNMGNRTAN
                     LQEAIGLISDSAGKVVARSSVYETKAWGKTEQPDFLNQVLVIDTALSAEDLMDQLMEI
                     EQEMGRRRQEKYGPRKIDIDILFFNDAIINSPRLTIPHPRLHLRNFTLEPLFELAPHL
                     IHPVLGKTIAQLFAESPDTLNVKKFSAETP"
     gene            7592..8227
                     /locus_tag="VLL95_11495"
     CDS             7592..8227
                     /locus_tag="VLL95_11495"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019136 - deoxynucleoside kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxynucleoside kinase"
                     /protein_id="HSR39530.1"
                     /translation="MDYHFITIEGNIGEGKTTLAHLLSKQLDARLVLEEFADNPFLPK
                     FYENPKQYAFPLELFFMAERYKQLKDMIISRDLFNTITVSDYLFTKCLLFARVNLPEE
                     EYRLYQRLFEIIHAQIVQPDILIYLHAPVSKLQQNIKKRNRSYEQSIPDEYLYNIQET
                     YHSYIRHHNVPTLLVDVSKADFLNNPTHLQTILKALEQKYDAGLHVVSLPE"
     gene            complement(8284..>9062)
                     /locus_tag="VLL95_11500"
     CDS             complement(8284..>9062)
                     /locus_tag="VLL95_11500"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR39531.1"
                     /translation="RTLAKAGVDLIKLIDQDEMTMEEVMAVVDEAHKHQLKVVGHAHR
                     PEEIRRGLKAGVDCFEHTGLAAAPEYPADIIEMIRERTAKMNLGPLFWTPTVEGLYNY
                     EYVINNPEHLDNYSWKLDLPQKIVDDIKQSIQKPESLSYYGLNPLRKPTLERKVKQLK
                     ESGAVLLIGTDSGIPMKFHSQSTWNELDVWVNRFGLDPMYAIRAATYWPAVAMGVEKD
                     YGTIAEGKYADIIAVKGDLLRNIDLLQRVDIVMKKGTRYK"
BASE COUNT         2379 a         2353 c         2074 g         2256 t
ORIGIN      
        1 aattactggg attatatttt ccgcaatgct tccggtacag acaacaacat ctcaatcagc
       61 ggaggtaccg acagaaccaa gtatttcgcc tccggttcct ttttcttcaa ccagggcatt
      121 gtacaaaata ccgacttccg cagggccagc ttccgggtga atgtggacca aaccatcaac
      181 tctaagctct ttatgcaggc cgggttgaac tatgtcaaca gctttgccaa tgaaaggcct
      241 gatggtaact cgtttttctc tcccatgaac agtgtgacca tccttggcaa tttccacaac
      301 atctggcagc gcgacgtcaa cggcaacctg caggcggtgg gcgaaagagg ccgtatcaac
      361 ccggtaagtg tggtggaaga cttcaaacaa accaacgaaa ccagccgcat catcggcaac
      421 ttcggtttga aataccgccc catgaaaggc ctgaccatcg actacctgtt gggtcttgac
      481 aactataccc aaataggaaa cacctttata cctccttata catacaatgc caaccctgcc
      541 ttctggggag gtggtccaac gctcgatccc acccaaaacg gttatgccag tgccgctacc
      601 aactatttcc gggggcttaa caatgaattg aatgctacct atacattcaa tatcacagat
      661 aatatctcca gcattacaca ggtaggctac cagagccagt acgaaatgaa caaatacctg
      721 atggcacaag gccgcggtat ggctccgggc gttcaaacag tgaacggagc cagcacatta
      781 ctgccaggcg ttgacagccg cagtgagttc tggctgcagg gtatttacct ccagcaaaac
      841 ttcaaagttg gcaaccaatt cttcttgacc ggtgcggttc gccgtgatgg ttcatcagca
      901 ttcggaaaga acgaaagaaa ccaaacctac ctgaaagcaa gtggtagctg ggtaattagt
      961 gaaggcgact ggtggtcgaa aatgtttggt gacttctgga acctggccaa agtgagcgca
     1021 gcttatggtc aaagcggtaa cctcacaggt atcggccctt acgaccgcta caatacctat
     1081 actaccaacc cattcctgag caggacttct atgcaaagcc gcagccgttt ggccaacgaa
     1141 aacgtaagac ctgaaaggca ggatgaaatt gaaattggta ccgacatggc ctttttgtcg
     1201 aacaggatcg gcctgacttt caactactat gtgaagaagg tggacgacct gctgattgag
     1261 cgcaccatcg ctccgtccac aggttttagc tctttgctcg ataactatgg aaaactggag
     1321 aaccgcggat ttgaaatttt ggtgaacgcc tcccccatcc gtaacaagaa attctcctgg
     1381 gacattaccg gtatttacaa ccagaacagg aacaaggcag tcaacattgg ccagtctttg
     1441 atcttgttgt caaccaacgc cggcgctccg gtagctatca tccaggatca gccggtgggc
     1501 gtattctacg gcaccttctt tgcccgtgac aacaacggaa accaaatcaa gaatagcgcc
     1561 ggtatacccc tgaccgaaag aggtatacaa aattcagtaa ccacctacac ccctcagcgt
     1621 gatgccaatg gtttgccttc aggttctgta ttgcgtcgga ttattggcga ccccaacccc
     1681 gattatactg ccagcctcat caacaccttc acctatggca aattgagctt gcgggtgcaa
     1741 tttgatgcgg ttaaaggagt ggatgtttgg aatgctgact ggcgtacccg ccagggcgtg
     1801 ggcaatggcg aagtggccga acaggaacac aatggcaaac tgccccgcgg ctatatcagc
     1861 ggcgtttatg ctattgaaga atggcgcatt gatgatggat catttaccaa attgcgtgaa
     1921 atctacctca gctatatgtt tggcagggtg ggcaaagcct tccgtgatct taccgtatat
     1981 gccagtgggc gcaacctggt aagttgggac aactacaaag gatttgatcc tgaagtaaat
     2041 gccggtggtc agagcacagt gctccgcggc atcgactttg gcccagttcc cattccgaag
     2101 caattcagca tcggcctaaa cgctaagttc taacccgcaa atcattcatt atgaaaaaga
     2161 acacatttaa aaatatcatg tattcctctg cgatgctggc taccattgtg atgggcaccg
     2221 gctgcagcaa ggactatgcc gaccccaata accccaccac cgaatcagcg ttttcaacgg
     2281 tgcgtggtat taccgctgtt tcggtgggcc tgcagcgtat ttataccgca ggcagggcca
     2341 gcaacctgta caacagggtc actattgatg gtttcaccac caaccagttc attattgtaa
     2401 acaggggtaa cactgccgaa gatcaattgg aacgcggtgg cgccattgta gatggtacga
     2461 ataccatgtt actgggcctg tggacaagca gcaacaagat catttacgat gccgataatg
     2521 tactggaggc tgctgccaat attggcgata aaggatacca aagtggcctg atcggttata
     2581 ccaccatctt caaggctttg gcgctcggcg atttggccat gttctgggaa aaaattcctg
     2641 atggaaatgg ccaaaatgtt gccttcatca acagggtgga tggattcaat agggctgtga
     2701 cggaaattga caaagcgttg aatgcgatcg ctgccaaccc tatcagcagt tcatttgccg
     2761 ccaatattcc ggcaggtgtt gatatcacca acaccttgcg tgctcttaag gcaaggttcc
     2821 tgttgtttgc aggaaaatat gctgaagcat taacggctgc caatacagta gatctgaccc
     2881 gcaaatccac tttcaatttc gatggagtta cccccaattc gatttttgaa acggccactg
     2941 ctaccaacaa cgtataccag cccatcgatt ctacgcttgg cctgctgggt gctttgaagc
     3001 ccgaccttgc cgacaaaagg gtgccattct acaccaccat ctcagcatcg ctgcccaggt
     3061 tccgcatcaa aggatttgcc gatgccaata ccgcccagtt cccattgttc cttcccggag
     3121 agatcaccct gatccgggca gagtgtcttg cccgccagtc ttcgcccgac ctcgccggtg
     3181 cacaggcagc attgaacagt gtcattacaa aaacaaccga cttgtatggt gttgcagcag
     3241 gactgcctcc cattaccgat ccgcttacac aatcgcagtt gcttgaccag atctatcgca
     3301 accgctgtat tgaactgtac atgagtggat tgaaactgga agacatgcgc cgctttggac
     3361 gccctgacag cgaaaagcgt cgcaacctga tgccttaccc cttcagggaa cgcgacaaca
     3421 accccaatac gccggctgat cctccattct gatcaaaagg aatattctac tcaataaaaa
     3481 aatgcctcct gaaacggagg ctttttttta ttgcattttg ttcttcaatc gcaacaatgc
     3541 gctgtcgagg cccggtccat ataccttgtc tgccaccatc attttcattt tcttcagggg
     3601 ctgataccat ggtgtttgaa aaacatagaa tacctgggta gtggcactgt ccggcaccag
     3661 ttgataaaaa gccatccctc cttctgcaat ggctttccct ccataactca accggaagaa
     3721 aagggtgtcg gctgcaggaa cggcgctctg attaagggca ttgaacaggt tgtcttcgta
     3781 aaacgggata tcagccgcct gcaaactcac gccgttattt gttgcagcca gtatgctggt
     3841 gagtgaaatt tcattcgtct ttactttttt gaacagactg tctgcactgc catgaatatt
     3901 ggctgccctg ctgatgacgg tattggaggg gaacatgagt gtgatgcccc acaacaaaac
     3961 ggtgaatacc actatactaa tcaaagccag ttttatcagt ttcatattgt attgtcaatc
     4021 ccttttaata aaagcccatc actcccactt gaacactttg acggctacgg catacaccac
     4081 cacgccccag agcatgatca ccccaatttc ataagctgta tcagacaaat gagcgccttc
     4141 aaatgcaatc ttgcgcatgg catcgttgaa aaaagtaagg ggcaatatgc ggcagaaagg
     4201 ctgcagccag gtggggaata catcgatgtt gaaaaaagtg cccgccagca aaaactgggg
     4261 cagcgttata aggttggcga atggcggaat ggatgattca ttcttggcca gtccgctcac
     4321 aatgaaacca aaccccatga ataccagcaa tgcgataaaa ctgagtacca ggatttccaa
     4381 aaaggtgatc catccattta ccagggtgaa cttgaaagcg aaggtgccaa tgccaatgat
     4441 caccactgcc gttaccaatt gaaataccac tcttgccagc ccttccccca acacaatgaa
     4501 tgttcggtga atgggcgtgg cataaaacct tttgagcacc agggtttgcc gcaaattgaa
     4561 aaacaaaaaa gccacgccga agacaccagc gctcagcagt gaaaagccca attgaccagg
     4621 caggataaaa tcaatggtcc ggtactttct tacttcggtt atctgcggat catcaaacct
     4681 ggcatacgat tttctgcccg ggtacaattg atcatcaatc ttgttgacca cattttccat
     4741 aaaaggcaaa aaggtggaca gtttatcgcc gctggccgta gtagattgaa aggtgatgcg
     4801 ataaggcgcc aatgaatcgg aagggctgtt cttgtatact cccagcaccc cggtgatccg
     4861 gcctttcttt aaatcgcttt ccagttcttt atccgatgcc ggcgttatga atttcacatt
     4921 gggaattgtc ttcagtgccg caatcacact attggtggta tcacagtctt tggccagcac
     4981 aatgcggtag ttggggatgc cgccaccgcc gccaataaaa ccgaatacca aaatgaagat
     5041 gagcggaaat gcaatgctga acaaaacagc cgaggggctg cgaaaaatgg ccttgagtgc
     5101 tccttttgaa atggccagca tggccaccca ttggttatag tttttcttca tgtaaagcga
     5161 aagtgttccc ggttgttcgg gcaaaagtat ccttttccgc catgccaaat cctgacatca
     5221 ggtcaaagac cctggggggc tgcaaagaag ggcagtcgca tctgaaccct gccctgcatt
     5281 tggcgcagtt gttccatttg cttccacaga taataaaaag ttgggcccat ttgttgtttt
     5341 acatgccagg ccatttgtat ttgttcgtcc ttcttttttc caaacagctt ttcaaagaaa
     5401 ggctccacca ccggccattc tttaaggctg tattctttca gtttcgccaa ccgggcagca
     5461 catgccacgg catcctgcat tccgccgagg cggtcaacca gcccgttttt tacagcggca
     5521 gtaccactcc aaatgcggcc ctgtgcaatg ctgtccacca tttcaggttt cagttggcgg
     5581 acaaccgcta ccctggcttt gaaagtggcg taaatgctgt ccacgtcttc ctgcaggtat
     5641 ttgcgctctt tgtcggtaag tggtctgaaa ggagatccca gcgttgcaga aggagcagtg
     5701 tttacctcgt caaaggtgat gcccaattta ttgctcatca ttttcgatac atcgaacagc
     5761 atggcaaaca cgccaatgga acccgtgagt gtattgggct gcgcaaaaat gctgtcggcg
     5821 ccacacgaga tgtaatatcc cccactggca gcatagtctc ccatgctcac caccaaaggc
     5881 ttttctttct ggagtaaact cagttcgcgg tgaattactt cgctggctac agcgcttcca
     5941 cctgggctgt ttacccgcaa caccaccgct ttaacattct tgtccaaccg tgctttgcga
     6001 accaactgtc tgaatccgtc gccgccaatc ataccgtcgg ttgaattgcc gtccacaatg
     6061 tcgccttgtg catagatgac tgcgatcagg tccttttttc tttcaggctt gtgataggct
     6121 tttatataat cgcctatcgt catgaaattg atcttatcga taccgggtgc accaatacgc
     6181 ctggcaattt tcgattttac ttcatcatcg tattgggcgt catccaccag cttttcccga
     6241 actccatcac tggcattgtg catcctgagt tcggtggcca gcatcctgag ccttgccgta
     6301 tcaatgcccc tgtctttcga agtattgagt aaaaattgct ggtaaagcga ttcaacgaaa
     6361 gcagtcatct gttcccggtt ggggtcactc attttggtat agcggaaagg ctctgtggcg
     6421 cttttgaact gccctgcata aaaaatttcc ggtttcacct ccagtttgtc cagcgttgct
     6481 ttgaaaaacg ccaattggta ggagtagccc tgccacgaca ttccgcccac ggggttcagg
     6541 tatatttcat cggaaatgga tacaacctca taggcacgct ggttcatgtc attggcaaag
     6601 gccacgatga acttaccgga gtttttaaat tgcttcagcg agtggcgcaa ttcctggctg
     6661 gttgcaaatc cgttcgggtt gtttcccccg ataagataaa ccccttttac ggcggtatca
     6721 gtagcggcgg catccagggc tcgttctata tcgtacagcc cgttcagaga aggagtttgg
     6781 ccttcaagaa gtccgaatcc ttcctccact ctttgctcca tgatggggcg gttcaggtcg
     6841 atgaccaaaa cagtccttgc cttgatctct ggtttttctt cgctcaccgc agaacttacc
     6901 aggcctacac ctgcggcaag caggatgaga aagaaaatga cgagggccag caaactggca
     6961 aaaaatatct tcagaaaact ccgcatgatg atgacggtta tacgcaacga tagcgatggg
     7021 ccgaaaataa ggatatttgc cccccaacag agaaagcgtt acatgaacag ggcctattta
     7081 cttacaggtg gaaacatggg taaccgtacg gctaacctgc aggaagccat tggccttatt
     7141 tccgactcag cgggcaaggt ggtggccagg tcttccgtgt acgaaacaaa ggcctgggga
     7201 aaaacagaac aacccgactt tctgaaccag gtgctggtga ttgatacagc cttgtcggca
     7261 gaagacctga tggaccaact gatggaaata gagcaggaaa tgggccgcag gcgccaggaa
     7321 aagtacggcc cccgcaaaat tgacatcgac attctctttt ttaacgatgc gatcatcaac
     7381 agtccccggc tcacaattcc acatccaagg ctgcatttgc gcaacttcac cctggaaccg
     7441 ctcttcgaac tcgcccctca cctcattcat cccgtgctgg gcaaaacaat tgcccagcta
     7501 tttgccgagt cgccggacac cttgaatgtg aagaaatttt ctgctgaaac tccatgaacc
     7561 tgccttgttt tgcgctaacg ggttagggca catggactat cattttatta ccattgaagg
     7621 aaacatagga gaaggcaaaa ctacattggc tcacctcctg agcaaacaac tggatgcccg
     7681 gctggtgctg gaagaatttg ctgacaaccc ctttctgccg aagttttacg aaaaccccaa
     7741 gcagtatgct tttccattgg agttgttttt tatggcggaa cgctacaagc aactcaagga
     7801 catgatcatc agtcgtgatc ttttcaacac gatcactgtc agcgattacc tattcaccaa
     7861 atgcctgctg tttgccaggg tgaatttgcc ggaagaagaa tacaggcttt accaaagact
     7921 cttcgagatc attcatgcgc aaatagttca acctgatatt cttatttacc tgcatgcgcc
     7981 ggtaagcaag ctgcagcaga acatcaaaaa acgcaatcgc agctacgagc aatccatccc
     8041 tgatgaatac ctgtacaaca tccaggaaac ttatcactct tacatcaggc atcacaatgt
     8101 gcctacgctg ctggtggatg tgtcgaaggc tgacttcctg aacaacccca ctcacctgca
     8161 aaccattttg aaggctttgg aacagaaata cgatgcagga ttgcatgtgg tttcattgcc
     8221 ggaatagcaa agcaaaaatg ccatccgagc tggatggcat ttttgttgaa tgaaagagtc
     8281 gccttattta tatcgtgttc cttttttcat cacaatatct acccgttgca gcaaatcaat
     8341 attgcgcagc aaatcgcctt ttacagcaat gatatcagca tacttccctt cagcaatggt
     8401 gccataatcc ttttctaccc ccatggcaac agcaggccaa taggtggcag cacgaatggc
     8461 atacatggga tccaatccaa atcggttcac ccaaacatcc agttcattcc aggtgctttg
     8521 gctgtgaaac ttcataggga taccactgtc ggttccaatg agcaatacgg cacccgattc
     8581 tttcaactgc ttcacttttc gttccagcgt aggcttgcgc agcgggttga ggccatagta
     8641 agagagactt tccggcttct gaatcgattg tttgatgtcg tcaacgatct tttgaggaag
     8701 atcgagtttc caactgtagt tatcaaggtg ttccgggttg ttgatcacgt actcataatt
     8761 gtaaaggcct tctaccgtag gtgtccaaaa cagcggacca agattcattt tggcagtacg
     8821 ctccctgatc atttcgatga tatcggctgg atactcaggc gctgcggcca aaccagtatg
     8881 ttcaaagcaa tcaacaccgg ctttcaggcc gcggcgaatt tcttcaggcc ggtgcgcatg
     8941 ccccaccacc ttcaattgat gcttgtgggc ttcatccacc acagccatca cctcctccat
     9001 ggtcatttcg tcctggtcaa tcagtttgat cagatcaaca ccagccttgg ccagcgtcct
     9061 ta
//
LOCUS       DATIQF010000677         1583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_26215, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000677 DATIQF010000000
VERSION     DATIQF010000677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26215"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..930)
                     /locus_tag="VLL95_11505"
     CDS             complement(<1..930)
                     /locus_tag="VLL95_11505"
                     /inference="COORDINATES: protein motif:HMM:NF014805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HSR39532.1"
                     /translation="MSTVSGPAPILFNESIPSKKKKIIVLGSGPNRIGQGIEFDYCCV
                     HGLLAIKECGYEAIMVNCNPETVSTDFDIADKLYFEPVFWEHLWEIIELERPDGVIVQ
                     LGGQTALKLAKKLVEKGVKIIGTSFDSMDIAEDRGRFSDLLRDLGIPYPEYGTAYDTD
                     EAITVANQVGYPVLVRPSYVLGGQRMRIVINDDELEKAVVSLLKHIPGNKILIDHFLD
                     RCQEAEIDAIFDGENFHVMGVMEHIEPAGIHSGDSNAVLPAFNLTPLEVTTMEFYAEK
                     IARALDIRGLINIQFAIKDGTVYVIEANPRASRT"
     gene            1061..1279
                     /locus_tag="VLL95_11510"
     CDS             1061..1279
                     /locus_tag="VLL95_11510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39533.1"
                     /translation="MTVEDLKLKLVQLQLSAADDEIREAVSHMLFAVELDNEWTEEEL
                     MEYWREIEVVERELTTVRLLSNLEKQLN"
     gene            complement(1276..>1583)
                     /locus_tag="VLL95_11515"
     CDS             complement(1276..>1583)
                     /locus_tag="VLL95_11515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39534.1"
                     /translation="DHVIWLHDDAGNIDPHIRYQVTGGHSPFHQVLWIESAAGTIFFG
                     GDDAPQHKQMINRFVAKYDYDGKKCMELRQQWWEEGKREGWTFLFYHDISHAVVKAS"
BASE COUNT          361 a          399 c          434 g          389 t
ORIGIN      
        1 ggtgcggctg gcccgggggt tggcttcaat tacgtacacc gtaccatcct tgatggcgaa
       61 ctggatattg atgaggccgc ggatgtccag tgcccgggca attttttccg catagaattc
      121 catggtggtc acttccagcg gggtgaggtt gaaggcaggc agcacggcat tgctgtcgcc
      181 gctgtggatg ccggcgggtt caatgtgctc catcacaccc atgacgtgga aattctctcc
      241 atcaaaaatg gcgtcgatct cagcttcctg gcaacggtcg aggaaatggt cgatcaggat
      301 cttgttgccg ggaatgtgct tgagcaggct taccactgct ttttccagtt catcatcgtt
      361 gataacgatg cgcatgcgct gaccgcccaa cacatagctg gggcgcacca gcacggggta
      421 gcccacctgg ttggccacgg tgatggcttc gtcggtatcg taagccgtac catattccgg
      481 gtaaggtatg ccaaggtcgc ggagcaggtc gctgaagcgg ccgcggtctt cggcaatgtc
      541 catgctgtcg aagctggtgc caatgatctt cacgcctttt tccaccagct ttttggccag
      601 cttcagggct gtttggccac ccaactgcac gatcaccccg tcaggccgct ccagttcaat
      661 gatctcccag aggtgctccc aaaacacggg ttcgaagtaa agcttgtcag caatgtcgaa
      721 atcggtggag acggtctcag ggttgcaatt caccataatg gcctcatagc cacactcttt
      781 gatggccagc aaaccatgca cgcagcaata gtcgaactca atgccctggc caatgcggtt
      841 ggggccgctg cccaaaacga tgattttctt tttcttactg ggaatgctct cattgaagag
      901 aataggcgca ggaccggaaa cagtgctcat ggttgaagaa ttgcgcaaaa gtaagggtgc
      961 tgcctaaaat agccggttaa gaatttaatt gtatgtcgca ggtcagtctt ttcaccattg
     1021 tgcccggcta ccttggcagc acttattaaa ggttgtgaca atgactgtag aagatctgaa
     1081 actgaaattg gtgcagctgc aactgagtgc agcagacgat gaaattcggg aagcggtttc
     1141 ccatatgttg ttcgccgttg aactcgacaa cgagtggact gaagaagaac tgatggaata
     1201 ttggcgtgaa atagaagtgg tggaaaggga actgactacc gtgcgcctcc tttccaacct
     1261 ggaaaagcag ctgaactagc tggctttcac caccgcgtgg ctgatgtcgt ggtaaaacaa
     1321 aaaggtccag ccttcgcgtt tgccttcctc ccaccattgc tggcggagtt ccatgcattt
     1381 tttaccatcg tagtcgtatt tggctacaaa tcggttgatc atttgcttgt gctgcggcgc
     1441 atcatcacct ccaaaaaaga tggtgccggc tgctgattct atccataaca cctggtgaaa
     1501 ggggctgtgc ccgccagtga cctggtagcg gatgtgtggg tcgatattcc cagcatcatc
     1561 atgtagccag atcacatggt cgt
//
LOCUS       DATIQF010000678         1835 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_284301,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000678 DATIQF010000000
VERSION     DATIQF010000678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284301"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..489
                     /locus_tag="VLL95_11520"
     CDS             <1..489
                     /locus_tag="VLL95_11520"
                     /inference="COORDINATES: protein motif:HMM:NF039905.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39535.1"
                     /translation="YFINGIGIGFEGAIAKALSNTKKWPGKLSYMATILSQILHYQTK
                     KYTIDVGGNIVNSTHLMIDICNGARAGGGFRVAPLANASDGWLDLIEVAAISPLRRLR
                     YLPVIERGKHLSLSFVKLTLIHSVRISSDEPIQYHMDGEYAEASQLEIKILPGVLPIR
                     CP"
     gene            complement(502..>1835)
                     /locus_tag="VLL95_11525"
     CDS             complement(502..>1835)
                     /locus_tag="VLL95_11525"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HSR39536.1"
                     /translation="ANAASGQPESYYLLSAEFSGEQNVAQYSFTLKTLKQLTDQLPCK
                     DQLIVFDTGLGEVIRRDFNTNFFSSDPVTASATRKNRLVLCAEKTGSESKDTADGKLK
                     GDIVRIITSMPAGNNITQLFTGKDAPGDLRYKLAMTALWNAQRCCYATVQLLSENDYL
                     QTLLHISSNFGNAKRSTMTRPAATEKKAAPSAAALMEKRRKHAIIIASNQYQAGDLWL
                     ELVTPGNDAKEVAGILKQQYGYDTTLLWNPGKKDILRVIDEIVYNEEANPYSQYIIYF
                     AGHGYWASNRKLGYIVPNDAMSLTDPLKPASQELDTYLDYATLFGMLNQLNKVLLITD
                     VCFGGTSFNSLLGRQNEVDPDKDEANKAINPYRLIMASGIKEVDDYVRLHDGSVSKHS
                     PFANDLIEVLKGAKGKLSVETLFALLKNGELSPTPVSRQFGTIIEPNEFKL"
BASE COUNT          434 a          452 c          443 g          506 t
ORIGIN      
        1 tactttatca atggcattgg gattggtttt gaaggagcca ttgcaaaggc gttgagcaac
       61 accaaaaaat ggccgggcaa gttgtcgtac atggccacca ttctttccca gatcctgcat
      121 taccagacca aaaagtatac aatcgatgtg ggtggaaata tcgtaaacag cacccacctg
      181 atgatcgaca tttgcaatgg tgccagggcg ggtggcggct tccgggtggc gcctttggcc
      241 aatgccagtg atggctggct cgatttgatt gaagtggccg ccatttcccc actccggcgt
      301 ttgcgatact tacctgtgat tgaaagaggg aagcacctgt cattatcctt cgtcaagctc
      361 accctcattc attcggttcg aataagctcg gatgagccta ttcaatacca catggatggc
      421 gaatatgccg aggcgtcgca actggaaata aaaatcctgc cgggcgttct acccatcagg
      481 tgcccttaaa aaaacaacag tctacaactt gaactcgttg ggttcgataa tggtaccaaa
      541 ctgcctgctt acaggcgtag ggctcaattc cccattcttc aaaagtgcaa acagagtttc
      601 tacagaaagt tttccttttg ctccttttaa aacttcaatt aggtcgttgg caaatggcga
      661 atgtttcgaa accgaaccat cgtgcagcct tacataatca tccacttcct tgatgcctga
      721 tgccataatc aggcggtagg gattgatggc cttgttggcc tcgtccttgt cggggtctac
      781 ctcgttttgt ctgcccagca agctgttgaa tgaagtgcct ccaaagcaca catcagtaat
      841 gagcagcact ttgttgagtt gattgagcat gccaaacaaa gtggcgtagt caagataagt
      901 atccagttcc tgtgaagccg gtttcagcgg atcggtcagt gacatggcgt cattgggtac
      961 tatgtatccc aacttcctgt tggatgccca atatccatgc cctgcaaagt atatgatgta
     1021 ctggctgtag gggtttgctt cttcattgta cactatttca tcaatcactc tcaggatatc
     1081 ctttttgccc ggattccata acaatgtggt gtcatagcca tattgttgtt tcagaatgcc
     1141 ggcgacttcc tttgcatcat ttcccggggt caccagctcc agccacaaat ccccggcctg
     1201 gtattgattg ctggcaataa tgatggcgtg tttgcggcgc ttttccatca atgcggctgc
     1261 ggatggtgca gctttctttt ctgttgcggc aggtcgcgtc atcgtgctgc gtttggcatt
     1321 gccaaaattg ctgctgatgt ggagcagtgt ttgcaggtaa tcattttcac tgagcagttg
     1381 aaccgtggca tagcaacaac gctgcgcatt ccacaaagca gtcatagcca acttgtagcg
     1441 caaatctccg ggagcgtcct tgccggtaaa cagttgtgtt atgttgttgc ccgcaggcat
     1501 gctcgtaatg atcctcacaa tatctccttt caacttgcca tctgcagtat cctttgattc
     1561 agaccccgtt ttttcggcac aaagcaccaa cctgttcttg cgggtggcgg aggcggtaac
     1621 aggatcgctg ctgaaaaaat tggtattgaa atcacgacgg atcacttcgc ccaacccggt
     1681 gtcaaataca atcagttgat ccttgcaagg caactgatcg gtcaactgct tgagcgtttt
     1741 gagcgtgaag gaatactgtg caacattctg ctcgccactg aactcggcag agagcagata
     1801 atagctttcc ggttgcccgc tggcagcatt ggctt
//
LOCUS       DATIQF010000679         1544 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_299801,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000679 DATIQF010000000
VERSION     DATIQF010000679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299801"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(179..754)
                     /locus_tag="VLL95_11530"
     CDS             complement(179..754)
                     /locus_tag="VLL95_11530"
                     /inference="COORDINATES: protein motif:HMM:TIGR00093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HSR39537.1"
                     /translation="MSFKYYLVYKPFQVMSQFSPVEGKQTLKDFFEVERDVYPVGRLD
                     YDSEGLLVLSNDKRLNQQLLHPISKQEKEYFVQVEGLMTAEALRQLEKGVTINIDGKP
                     HQTLPAKARLLNPPPVLPERNPPIRYRAHIPTTWISLTITEGKNRQVRRMTAAVGFPT
                     LRLVRWRQGKLTIEGLEPSDMRMVGPRQLLP"
     gene            851..1504
                     /locus_tag="VLL95_11535"
     CDS             851..1504
                     /locus_tag="VLL95_11535"
                     /inference="COORDINATES: protein motif:HMM:TIGR00633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HSR39538.1"
                     /translation="MRIISYNVNGIRAAINKGFLDWLKTDPADVICLQETKAHKENVD
                     YLAIEALGYHTYWYSAEKKGYSGVAVFSKQKADHVQYGNGIMQSDAEGRVIRVDFGKL
                     SIVNAYFPSGTSGDERQAYKYVWLDEFFEYIHELKKTRTQLVIVGDYNIAHREIDIHD
                     PKGNKKSSGFLPEERAWMDKWLESGMVDTFREVHPEQTGAYSWWSQRFPSVRLQNKG"
BASE COUNT          401 a          400 c          392 g          351 t
ORIGIN      
        1 cataagttaa ccccttctgt cccccaaagg agatcattgg ttattgattc aaaatttgac
       61 cgggtttttg tccctctacg aaggaccctg tctaaaatgg cggcgaaggt acgcccattc
      121 acccgaaaag gcttgtgaag attgtgtttc tgacagaatc tttctggcta tcagtgcgtt
      181 aaggcagcaa ttggcgcggt ccaaccatgc gcatatcgct gggttccaac ccttcaatgg
      241 tcagctttcc ctggcgccaa cgcaccaggc gcaaggttgg aaaacccacc gcagccgtca
      301 tgcgacgcac ctgccggttt ttgccctcgg tgatggtaag gctgatccag gtggtgggaa
      361 tatgggcccg gtagcggatg ggcggattgc gttcgggcaa aaccggtggc gggttcagca
      421 gccgggcttt ggccggcagc gtttggtggg gtttcccatc aatgttgatc gttacccctt
      481 tttcaagttg ccgcaatgcc tccgccgtca tcaggccttc cacctgcacg aagtattctt
      541 tttcctgctt cgatatgggg tgcagcaatt gctggttcag tcgcttgtca ttggacaaca
      601 caagcaatcc ttcgctgtcg taatcgagcc tccccacggg gtacacatcc cgctccacct
      661 caaaaaaatc tttcaaggtc tgctttcctt ccaccgggct gaactggctc atgacctgga
      721 aaggcttgta cactaaatag tatttgaacg acacgctgat aatttaaaaa atggaacagg
      781 atgaagttga cgatttcccg cctaaattgc tccactcctc aaatgtcgaa cttcaaaacg
      841 gaattgcttc atgcgcatta tttcttacaa cgtcaatggc atcagggcgg ctatcaataa
      901 aggcttcctg gattggctga agaccgatcc cgccgatgtg atttgcctgc aggaaacaaa
      961 agcacacaag gaaaatgtag actacctggc cattgaagca ctcggctacc atacctactg
     1021 gtacagcgct gaaaagaaag gctacagtgg cgtggcggta ttcagcaagc aaaaggccga
     1081 ccatgtacaa tatggaaacg gcatcatgca aagcgatgca gaaggtcgcg tcatcagggt
     1141 tgactttggc aaactgtcca tcgtgaacgc atacttcccc agcggcacca gcggcgacga
     1201 aagacaggcg tataagtacg tgtggctcga tgaatttttt gaatacatcc acgaactgaa
     1261 aaaaacaaga acgcaactgg taatagtggg agactacaac attgcgcatc gtgaaataga
     1321 catccacgac cccaagggca acaagaaatc atccggcttc ctgcccgaag agcgggcctg
     1381 gatggataaa tggttggaga gcggcatggt ggataccttc cgagaagtgc accccgagca
     1441 aacaggcgcc tacagctggt ggagccagcg tttcccgagt gtgcgcctgc aaaacaaagg
     1501 ctagcgcatc gactatattt cggttaccaa aaacctggca tcaa
//
LOCUS       DATIQF010000680         5268 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_254046,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000680 DATIQF010000000
VERSION     DATIQF010000680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5268)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5268)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5268
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254046"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(118..1407)
                     /locus_tag="VLL95_11540"
     CDS             complement(118..1407)
                     /locus_tag="VLL95_11540"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HSR39539.1"
                     /translation="MINRTIAPEIKNAVDFTFSLKPIEKWKLDNGVEVYALNAGEEEV
                     VQLEWVFFAGNSHEPKNMVASATNFMLKNGTSTRNAFEINEHFEFYGSYLNRNCYNET
                     SNITLHSLSKHVEALLPVVQELVTDAVFPQEEMDIFIQNTKQRLEVNLKKCDFVANRE
                     IDVLIYGKDHPYGKYSSAEALDALTREDLVQFYEQHYRQGSCILFVSGKLPANLQALL
                     NQYFGQLKWSKATVKPRSPLALPNALPANRQVRIMNDENGVQGAVRIARHFPNRHHPD
                     FQEVQVLNTLFGGFFGSRLMSNIREEKGYTYGIYSYLQNHVEQSAWMISTEAGRDVCE
                     ATIAEVYKEMEILRNEPVDEEELLLVRNFMLGSILGDLDGPFQIMGRWKGYILHGDDD
                     SYFYRAIETIKTVSAERLQELANQYLQPELFYEMVVV"
     gene            complement(1584..2330)
                     /locus_tag="VLL95_11545"
     CDS             complement(1584..2330)
                     /locus_tag="VLL95_11545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39540.1"
                     /translation="MAYYGNLYSQHMGVLGQYPKTEMLRRLEQECAAWQKADSLTIVL
                     PALHYIAVTAQGSPGKDGKYRYRMPDSEKDKIVQWAREIKGIAFMDIQVGHSTVLDEL
                     PHLEKYLKMPDVHLGIDPEYSMKNGDVPCHSIGTFDASDINVAVEYLAALVKKYQLPP
                     KVLVVHRFTQNMITNYKDIKKVPEVQIVIDMDGFGSKTLKLASYKQFLAREPIQFTGF
                     KLFYKLDKPVMYTPAEILRLSPIPVYIQYQ"
     gene            complement(2640..3170)
                     /locus_tag="VLL95_11550"
     CDS             complement(2640..3170)
                     /locus_tag="VLL95_11550"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR39541.1"
                     /translation="MIPVLIFLQALMFSPSAEPSVMPGEFFYWQEGYISPQQQRTLME
                     YAGPNARPMVPTAIKRTSEQDAGFVAKWLADNRKQALLTFSLDPKKSNYYGQAEKTLD
                     MIFQQAEKENAVLYFDDADALFGLPSASAQQKEAAKALIQLAKKAKGAVLFQCVKDDA
                     WYALAEAGFGILDMKL"
     gene            complement(3243..4439)
                     /locus_tag="VLL95_11555"
     CDS             complement(3243..4439)
                     /locus_tag="VLL95_11555"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HSR39542.1"
                     /translation="MIVHPDFSTPMAVVNVIYDVGARDEDPSKTGFAHLFEHLMFGGS
                     INIPEYDEPLQMAGGENNAFTTNDMTNYYIQLPVENLETAFWLESDRMLSLAFSPESL
                     EVQRKVVCEEFKEHYINKPYGDVWQKMRELSYATHPYRWMTIGKELKHIEEATLEDVK
                     AFFFKHYTPVNAILVVAGPVTVEQVKTLANKWFADIPPGTRYVRNLPKEPRQQQARKV
                     ETEANVPLDALYKTWHIGGRLDNSYYATDIITEVLGSGASSRLYQRLVKEQRLFSNIE
                     CYHFGSFDPGLLTIEGKLVKGVKIQDAEAAVNAEIEKLVNEGIDDKELQKSKNKTESL
                     IAFEDMALMSRATNLAMYELLQDANLMNEELQKFQAVTAEELKATAARIFDPANSNTM
                     YYLARN"
     gene            complement(4557..5213)
                     /locus_tag="VLL95_11560"
     CDS             complement(4557..5213)
                     /locus_tag="VLL95_11560"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39543.1"
                     /translation="MSTLMLNDALFQEACSALCEADPVMAKIGESYGHPPFWQRPPGF
                     VSLVKIILEQQVSLESAKAHFLKLKSRVPDMDPALLISMNDAAFFDCQVSRQKASYLR
                     HLSHAVLDGSLKLELLERMPDDEVMHHLCRVKGIGRWTSQVYLMFCLSRPDRFPEGDI
                     AAINAIRQLYPETRAYSLPEIYQFASRWSPWQTVASFFLWWWYLRSKNRKIPDYSRLD
                     "
BASE COUNT         1209 a         1362 c         1305 g         1392 t
ORIGIN      
        1 atatggccat tctcaatgat tggttcgact cagacgactt ttctacaggc aaggtaggaa
       61 ttgtcgttac ctggaatgtc cccttttacc atgatttctg gcccggaact ttgcacccta
      121 caccactacc atctcataaa acaattccgg ctgcaggtat tgattggcca gttcctgcag
      181 gcgttcagca ctcaccgttt tgatggtttc aatggcccgg tagaaatagc tgtcgtcgtc
      241 gccatggagg atgtatcctt tccagcggcc catgatctgg aaggggccgt cgagatcgcc
      301 gagaatggaa ccgagcatga agttgcgtac cagcagcagc tcttcttcat ctaccggttc
      361 gttgcgcagt atttccattt ccttgtatac ttcggcaatg gtggcttcgc atacatcgcg
      421 gccggcctcg gtgctgatca tccaggcgct ttgctccaca tgattttgca aatagctgta
      481 gatgccgtag gtatagcctt tctcttcgcg gatattgctc atgaggcgac taccaaaaaa
      541 accaccgaac agggtgttga gcacctgtac ttcctggaag tcggggtggt gccggttggg
      601 aaaatgacgg gcgatgcgca ccgctccctg cacgccgttc tcatcgttca tgatacgcac
      661 ttgcctgttg gccggcaggg catttggcaa tgccaggggc gacctgggct tcacagtggc
      721 tttcgaccac ttcagttggc cgaagtattg attgagcaaa gcctgcaggt tggcaggcaa
      781 tttgccagac acaaacagga tacaactgcc ctggcggtaa tgctgctcgt aaaactgtac
      841 caggtcttcc cgggtaagtg catccagtgc ttcggcagaa ctgtatttgc cataaggatg
      901 atccttgccg taaatgagca catcaatttc acggttggcc acaaaatcac atttcttcag
      961 gttcacttcc agccgctgct tggtgttctg gatgaaaatg tccatttctt cctgcggaaa
     1021 aacagcatca gtaaccagtt cctgcaccac gggcagcaag gcctccacgt gcttgctcag
     1081 gctgtgcagc gtgatgttgc tggtttcgtt gtagcagttg cggttgagat agctgccgta
     1141 aaattcaaaa tgctcattga tctcaaaagc gttgcgggtg ctggtgccat tcttcagcat
     1201 gaagttggtg gcgctggcta ccatgttctt tggttcgtgg ctgttgccgg caaaaaacac
     1261 ccattccaac tgcaccactt cttcttcacc ggcattcagt gcgtacacct ctaccccgtt
     1321 atcaagcttc catttttcaa tgggcttcag agaaaaggta aaatcaacgg cgttctttat
     1381 ttcgggagcg atagttctat tgatcatggc cataaatatg gagcacaaaa gtagcgtttc
     1441 aggatttgcc agttgttaaa gatggggcgt ccccaggtgc caggcaatgg tacattccat
     1501 gcgtaaaatc cggagggatt cagcaaggct ccatacctca aatcatgaag acccatgctg
     1561 gccatttccc ttaatccaat tccttactgg tactgtatgt aaactggtat tggcgaaagt
     1621 cgcaggatct ctgccggcgt atacatcacg ggcttatcga gtttgtagaa caatttgaaa
     1681 cctgtgaact gtataggctc tcgtgccaga aactgcttgt agctcgccag tttcagcgtt
     1741 ttgctgccaa acccatccat gtcaatcacg atctgtactt cgggcacttt tttgatgtct
     1801 ttgtaattag tgatcatgtt ctgcgtgaac cggtgcacca ccaacacctt gggaggcagt
     1861 tggtattttt ttaccagggc agcgaggtat tccacggcca cgttgatatc actggcatcg
     1921 aaagtgccaa tagagtggca aggcacatcg ccgtttttca tggagtattc cggatcgatg
     1981 cccaggtgta cgtcgggcat cttcaggtat ttctccaggt gcggcagttc atccagcacc
     2041 gtactgtggc ccacctgtat gtccatgaaa gcgatgccct ttatctcacg ggcccattgc
     2101 acgatcttat ccttttcgct gtcgggcatg cggtaccggt acttcccatc cttgcccggc
     2161 gatccctgtg ccgtaacggc aatgtagtgc aaggccggta gtactatcgt taggctatcg
     2221 gccttttgcc atgccgcaca ttcctgctcc aggcggcgca gcatttctgt tttgggatac
     2281 tgacccaaca cgcccatatg ctggctgtac aaattgccat agtaggccac aatgctcctt
     2341 tgaggggacg cggcgcattc accggccagc ggcccgtttt gtcctggttg gcgagcctgt
     2401 tcagcaaccg atggtaaccg gcagagtcca cgtatggatc gggtttttgt ttcagctgcg
     2461 cccacgccac gctacactgc aaaaaagcaa acagcaatag caaagtacag gcaaagttcc
     2521 ctatggacaa acggtaaagc atgttatccc ggttggtgct ttcccaaggt agcggagcca
     2581 cacaaaaaca ggactgacat tcatcagtcc tgcgcacaga atttattgat aaagcctgct
     2641 cagagcttca tgtccaaaat gccaaaccct gcttcagcca gtgcatacca ggcatcgtct
     2701 ttcacacact gaaacagtac ggctcctttg gcttttttag ccaattggat caaagctttg
     2761 gctgcttctt tttgttgtgc cgatgccgat ggcagcccga atagagcatc ggcatcatca
     2821 aaatacaaca cggcattctc tttctctgcc tgctgaaaaa tcatatccag cgttttttca
     2881 gcctgcccgt aatagttgga ttttttcgga tcgagactga acgtgagtaa tgcctgcttg
     2941 cggttgtcgg ccagccattt agccacaaag cccgcatcct gctcactggt gcgcttgatg
     3001 gcagtgggca ccatcggccg ggcattgggt ccggcgtatt ccatcaatgt gcgctgctgt
     3061 tgcggactga tataaccttc ctgccagtaa aaaaattccc cgggcatcac ggaaggttca
     3121 gcagaaggag aaaacatcag tgcctgcaaa aaaatcaaaa cagggatcat gtgtggtggg
     3181 tttgaatgaa caatcggcga tttacagccg gtgcacaaaa cgatgcgaca ggcttgctta
     3241 ttttaattgc gggccaaata atacatggtg ttgctattgg caggatcaaa tatccgggcg
     3301 gcagtggcct tcagttcttc ggccgttacg gcctggaact tctgcaactc ttcgttcatc
     3361 aggtttgcat cctgcagcag ctcgtacatg gccaggttgg tggccctgct catgagcgcc
     3421 atgtcttcaa aggcaatgag gctttcggtt ttgtttttgg atttctgcag ctctttgtca
     3481 tcaatgcctt cattcaccag cttttctatt tccgcattga cggccgcttc ggcgtcctgt
     3541 attttcacgc ctttcaccag tttgccttca atggtaagca agcccggatc gaagctgccg
     3601 aaatgatagc attcgatatt gctgaacagc cgttgttctt tcaccaaacg ctggtacaac
     3661 cggctgctgg cgccgctgcc aagaacttcg gtaatgatat cagtggcata gtagctgttg
     3721 tccaatcgtc cgccgatatg ccatgttttg tataaggcat cgagcggcac gttggcttct
     3781 gtttccactt tacgggcctg ttgctgccta ggttctttcg gcagattccg aacataccgg
     3841 gtaccaggag gaatgtcggc aaaccatttg ttggcaaggg ttttcacctg ctccaccgtc
     3901 accggacccg ctaccaccaa tatggcattc accggagtgt aatgtttaaa aaagaacgcc
     3961 ttcacatctt cgagggtagc ctcttcaatg tgtttcagtt ctttgccgat ggtcatccag
     4021 cggtaaggat gggtggcata actgagttca cgcatttttt gccacacatc gccatagggc
     4081 ttgttgatat agtgctcctt gaattcttcg catactactt tgcgctgcac ttccaggctt
     4141 tccgggctga acgccaggct gagcatgcga tcgctctcca gccagaaagc ggtttccagg
     4201 ttttctaccg gcagctggat gtaatagttc gtcatatcgt tggtggtaaa ggcattgttc
     4261 tcaccaccag ccatctgcaa aggttcgtcg tactcgggta tgttgatgct gccgccgaac
     4321 atgaggtgct caaacaaatg ggcaaagccg gttttggaag gatcttcatc acgggcaccc
     4381 acatcgtaaa tcacattcac cactgccatg ggcgtactga agtcgggatg cacaatcaca
     4441 cgcagtccgt tatcaagttg aaatctttcg aatcgaatca taggacggca aaggtcgggg
     4501 aaaactgatc tatcgaacag aggcaggttc caggcggtgg tttttaggaa ttcctttcaa
     4561 tccaaacggc tgtagtcagg aattttcctg tttttggagc gcaggtacca ccaccacaaa
     4621 aagaaggaag ccacggtttg ccaggggctc caacgggagg caaactggta gatttccggc
     4681 aatgaatatg cccttgtttc cgggtacagt tgccggatgg cattgatggc cgcaatatca
     4741 ccttccggga aacgatcggg gcgtgagaga caaaacatca ggtaaacctg gctggtccag
     4801 cgcccgatgc ctttcacccg gcacaaatga tgcatcactt catcatccgg cattctttca
     4861 agcagctcca acttaagact gccatcgagc actgcatgac tcaggtgacg caggtagctg
     4921 gctttctggc ggctcacctg gcagtcaaag aatgccgcat cgttcatgct gatcagcaaa
     4981 gccggatcca tgtccggcac ccttgatttc aatttcagga aatgggcttt ggctgattca
     5041 agcgacacct gctgttcgag gatgatcttc accagggata caaatccggg tggcctttgc
     5101 caaaacggag gatgaccata cgattcgccg atttttgcca ttacaggatc tgcttcgcac
     5161 aacgccgaac atgcttcctg aaaaagggca tcattcagca tcaaagtgct catttgcata
     5221 aattcagctg tcgggaatta cttaatgttc tcaatcttca tgacggtt
//
LOCUS       DATIQF010000681         8986 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_147898,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000681 DATIQF010000000
VERSION     DATIQF010000681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8986
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147898"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1061)
                     /locus_tag="VLL95_11565"
     CDS             complement(<1..1061)
                     /locus_tag="VLL95_11565"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39544.1"
                     /translation="MKRILLTCLAMMILVVVMAQTADLKSAFGALKARSIGPAGMSGR
                     VTAIDAVHANPDIIYVGAASGGVWKTTNGGASWIPVFDEQSTQNVGSIAITQSNPNIV
                     WVGTGEGNPRNSVNLGEGIYKSLDGGKTWKLMGLEKTRNIHRIIVDPTDPNTVYAGAI
                     GNPFAAHPERGVYKTTDGGETWKLVLHTNDSSGVADMVIDPSNPNKLLVCMWQHQRTP
                     WSFTSGGNGSGFYVTWDAGKSWKKMGKSEGLPDTTGRIGIAIAPSDPNVVYAMVEATK
                     NGLYRSEDGGMKWELVNSNPEWVTNRPFYFQDIMVDPQNENRLYSIYQMIAQSDDGGR
                     NFRVIIPYSGVHPDHHAWW"
     gene            1241..1924
                     /locus_tag="VLL95_11570"
     CDS             1241..1924
                     /locus_tag="VLL95_11570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39545.1"
                     /translation="MKKFSFLATFSLLLSMSLMAQPKAYLNGYAGFTFAESFTVQTFQ
                     GRFNENAHYGGSAELVLQGISTPHSERTIEIAYLGMQTVLDGWSWPVGQPRPNPATYN
                     VSLNYITAGFNNYFGHDHKIMGFGGLNMGAGWMSNQTEPSRPSNTRFSIGLKGGGRFM
                     FSDNVGLKLYAQLSTIVEGVGGGFYFGTGGSGVAVTTFASVVQFGLGGGLTVGLGGKP
                     QANNNNQRR"
     gene            1973..4405
                     /locus_tag="VLL95_11575"
     CDS             1973..4405
                     /locus_tag="VLL95_11575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39546.1"
                     /translation="MIQLLHSRLVLCIALLSFFSLNVEAQDYYWPRDIVLENGAIITI
                     YEPQPEKLEGNKLKGRAAIAVREHPDSSQIFGAIFATALLETNRDERTALLEKLTVNN
                     VRFPGFENEEKIAKLTKIIEEEVPLWNLVIPLDLLVAGLEEKPNANATGFNNDPPTII
                     YANKPSLLISIMGEPVVKMEKGSSIERVVNTPFPIIKDGPFYYIFAGGYWYRSRSVTS
                     GWESVAAASLSATLKEIDADIRRQQKEQERETGEPIEKTDGPVNIIVATTPTELIQTT
                     GLPVYNSVEGTSLLYVSNTTSDIFKDIESQKVYLLLAGRWFASPTIEGPWEYVPSDKL
                     PADFAEIPFESDKGDVLANVAGTEQAQEAVLDAMIPQTAKVYRKDAKLEVVYDGAPIF
                     EPIKGTSMQLAVNTTTTVFQANGRFFALDNGIWFVSDKATGPWVLSDERPEEVNKVPP
                     DCRAYNAQHVHIYESNENYVVTGYTQGYTQTFVQGPTIVYGTGWMMSPWVGPVLFVPP
                     PMIWGFGFRWHPWWGWSMGFGFRVNMFWGMGGVRVGVGFGMGVGFFGPPMFRPPIVVV
                     GVGRRPPMGGWGRPPAGGWGRPGIGGGNNNNINIGGGGGNTINIGNGNGNNIYNNRPG
                     VVNNNRGDRPGNRPGANAGGNNTRPGAGAGNATRPGTGEGRPETRPGTGAARPGNNNG
                     NLTGGQTRPTTRETRPSREPNNVITDRNGDVFRRDQNGNWNQRNGNNWQQNNRNNNRQ
                     LDQMQQGRDRSMNRQNTYQPPRTSPSARPPANSRPPSGSGTRPPSGGTRPSSGSRPPS
                     SGSRPASSGRRG"
     gene            4861..5562
                     /locus_tag="VLL95_11580"
     CDS             4861..5562
                     /locus_tag="VLL95_11580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39547.1"
                     /translation="MKKITLLALAMLLGASSIYAQVGQPGPKFYLNGFAGYTFDESFY
                     GGYNEWTYKGNVHYGGSAEFVLQGASTRYNERTVELLYQSMSSDLDAYAYYNNNNNRV
                     QGSMTVSYLTLGINNYMGKSRKVMGFGGLAMGAAFFNGDAKVDNTSQSASSTKFAINL
                     KGGGRFMFTDNIGLKIYAQLNTVVGGVGGGFYFGTGGSGAGVSTYSSMVQFGLGGGLT
                     VGLGAPKAAPVSPTN"
     gene            5644..7962
                     /locus_tag="VLL95_11585"
     CDS             5644..7962
                     /locus_tag="VLL95_11585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39548.1"
                     /translation="MKKNLRYYVACFITIGSIFTSPLHAQQGWPREIPILTNGSITIY
                     PPQPESFSGNKLSARAAVSVKASKDAEPVFGAIWMEASTQTNRETRMVSVESIDVKQV
                     KFPGQTDSAKIEKFSQLLETEMPKWHLTVSMETLTTALEKEGIKASTDLKTDPPKIIY
                     SNKVSVLVLIDGEPKLEKDKNMGLDKVVNSPFPIVKEGGNYYLLVSSFWYVSNNIKTG
                     WKYTTQLPSKLTQLNKEIEKQRKEQEASNKSVALAAKEAKPAEEVVVSTEPAELIQTD
                     GNPEYKSITGTSLLFITNSPNDVFKDINSQKTYVLFAGRWYSASSLKGPWAYVPADKL
                     PADFAAIREGSDKDNVLASVAGTNAANEAVLDAMIPQTATVNRSTAKPSEEVKYDGTP
                     QFEKIQGTNLELAVNTKSTVLRQNGIYYIVDNGIWFESTSANGPWRVSTKRPTDVENI
                     PASSSAYNTKYVEVYDVQPDVVVVGYTPGYMGSYVYGPTVVYGTGYPYNPWFGPYYYP
                     RPVTYGFGMSYNPWTGWSFNFGMSWGPWHFGVSSGGGMYFGFGFGGWCGPPVYRPPYR
                     PPYWGGGYYGGGNHWGNNNINIGGGNTINIGEINIGNGNNNIYNKRGPGVNTRDIQRQ
                     PGMNTGGANAGARPSAKPATRPSTSPSTRPATQPAAGNKMQGGGNTKIPNAPSSLDRS
                     GPRDVYTDKSGNVYKRDTDGNWNQNNKGNNWQPANNNGTRDLDRMQQQRDRSRSRDNS
                     FQSNKSMQSRPATMNRGGGGARPAGGAGMRRR"
     gene            complement(8028..8510)
                     /locus_tag="VLL95_11590"
     CDS             complement(8028..8510)
                     /locus_tag="VLL95_11590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39549.1"
                     /translation="MRLSIIAAVVMLPIFTIEKTQAQATGYAYKTAAGFKFHPTAVTI
                     KHFVKSNAAIEGLGYFWRNGFRATGLYEWHGNFTGAAGLKWYVGGGAHIDSWNEKYRD
                     EYRPEGRAAAGLDGVLGLDYKFKGAPINLSLDWQPSVTFIGAHYSTTDWVGVAIRFAW
                     "
     gene            complement(8664..>8986)
                     /locus_tag="VLL95_11595"
     CDS             complement(8664..>8986)
                     /locus_tag="VLL95_11595"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR39550.1"
                     /translation="YCINDDDSQNRGRNLPFNSGTAAAYGISKEEALTAITLNAAKVL
                     GIDNRTGSIEAGKDANIVVSAGDILDMKSSIITHAFIQGRSIELVDKHKQMFERYKYK
                     YGIK"
BASE COUNT         2367 a         2316 c         2250 g         2053 t
ORIGIN      
        1 atccaccagg catggtgatc gggatgcacg ccactgtaag gaatgatgac cctgaagttg
       61 cgaccaccat catcgctttg ggcaatcatc tggtaaatgc tgtacaagcg attttcattc
      121 tgaggatcca ccatgatgtc ctggaaatag aaggggcgat tggtcaccca ctccgggttg
      181 ctgttcacca gttcccattt catgccacca tcttctgaac ggtacaaacc atttttagtg
      241 gcttccacca tggcgtagac cacgttggga tcgctggggg cgatggcaat gccaatgcga
      301 cccgtagtgt caggcagccc ttcggacttg cccattttct tccagctttt gccggcatcc
      361 caggtgacgt aaaatccact gccattgccg ccactcgtga agctccaggg cgtacgctgg
      421 tgctgccaca tgcaaaccaa aagtttgttg gggttggaag gatcaatcac catatcggcc
      481 acaccactgc tgtcgttggt atggagcacc agcttccagg tttcgccgcc atcggtggtt
      541 ttgtacacgc cccgctccgg atgcgccgcg aacggattgc caatggcgcc ggcatacacc
      601 gtgttcggat cggtagggtc cacaatgatc cgatggatgt tgcgggtttt ctccagcccc
      661 atcaatttcc aggttttgcc accgtcgagg cttttgtata tgccttcgcc caggtttacg
      721 ctgttgcggg ggttgccttc gccggtaccc acccacacga tgttgggatt gctttgcgtt
      781 atggcaatgg agccaacgtt ttgcgtggac tgttcatcaa aaacagggat ccagctggcg
      841 ccgccgttgg tggttttcca tacgcccccg ctggcagcac ccacatagat gatgtccgga
      901 ttagcatgaa cggcatcaat ggcggtaacg cggccactca tgccggcagg gccaatgctg
      961 cgggctttga gagcgccaaa ggcactcttc aggtcggcgg tctgtgccat aacaacaacc
     1021 aaaatcatca tggcaaggca ggtaagcaat attcttttca taatcagtca ggtatgttta
     1081 agtaaaatca ccggttataa gatgttgcgg gcaggttatt ccttcggtaa tgaacaaagg
     1141 atttgaagga tcattttacc ccaatgccgc tcctgcatct ttactacctg cagattgctg
     1201 cattcacctt acttttaaac ccattaaaca cacttaaccg atgaagaaat tttctttttt
     1261 agcgaccttt tccctgttgc tgtcaatgag cctgatggct cagcccaaag catacctgaa
     1321 cggttatgca ggatttacat tcgccgaaag tttcaccgta caaacttttc aagggagatt
     1381 taacgaaaat gcgcattacg gaggctcggc cgagttggta ttacaaggca tcagcacccc
     1441 gcacagcgaa agaacgatag agatagctta cctgggcatg caaactgttt tagacggatg
     1501 gtcctggcct gtagggcaac cacgccctaa cccagccact tataatgtat ctctgaatta
     1561 catcacagca ggtttcaaca actactttgg tcacgatcac aagatcatgg gttttggtgg
     1621 actgaacatg ggtgccggtt ggatgagcaa ccaaacagaa ccttcacgac ccagcaatac
     1681 ccgtttctcc atcggtctga aggggggtgg tcgttttatg tttagcgaca atgtgggttt
     1741 gaaactgtat gcacaactca gcaccattgt tgaaggcgta ggtggcggct tttatttcgg
     1801 aacaggcggc agcggagtag ccgttaccac attcgcttcg gtggttcaat ttggcctggg
     1861 tggcggtctg accgttggac tgggtggcaa gccacaggcc aacaacaaca accagcgccg
     1921 ttaaccgggt tggggcaaat cccttccatt ccacaaactc aaacaaatgc ttatgattca
     1981 attattgcac tccaggctgg tgttgtgcat tgccctcctt tctttttttt cgctcaatgt
     2041 ggaggcacaa gactattact ggcctcgtga cattgtgctt gaaaatggcg ccatcattac
     2101 catctacgag ccacagcccg aaaaactgga aggcaacaag cttaaaggaa gggcagcgat
     2161 agccgtgagg gagcacccgg atagcagcca gatcttcggc gccatttttg ccacagccct
     2221 gctcgaaacc aatcgtgacg agagaacagc attactggaa aagctgaccg taaataatgt
     2281 tcgttttcca gggtttgaaa acgaggagaa aattgccaaa ctaacgaaga tcatagaaga
     2341 agaagtacca ctgtggaacc tggtaattcc gctggatttg ctggtggccg ggctggaaga
     2401 gaaacccaat gcaaatgcaa ccgggttcaa caacgatccc cccaccatca tctatgccaa
     2461 caagccttca ttgctgatct cgatcatggg cgagccagtg gttaaaatgg aaaaaggttc
     2521 cagtatagag cgggtggtaa acaccccctt ccccatcata aaggatggtc ctttctatta
     2581 catttttgcc ggaggatact ggtaccgttc acgcagcgta accagtggct gggagtcggt
     2641 tgctgcagcc agcctctcgg ctaccctcaa ggaaatagat gcagacatca ggcgccagca
     2701 aaaagaacag gaaagagaaa caggagagcc cattgaaaaa acggatggac cggtgaacat
     2761 cattgtggcc accacgccca ccgaattgat ccaaaccacc ggcctgcccg tatacaactc
     2821 cgtggaaggc acttccctgc tgtatgtgag caataccacc tccgatattt tcaaggatat
     2881 tgaatcgcaa aaagtatacc tcttgctggc agggcgctgg tttgcatcgc caaccattga
     2941 aggcccctgg gaatatgtgc cctccgacaa attgcccgct gattttgctg aaataccttt
     3001 tgaatcagac aaaggagatg tgctggccaa tgtggcaggt accgaacaag cacaggaagc
     3061 agtgttggat gccatgattc cacaaacggc caaagtgtat cgcaaggatg ccaagttgga
     3121 agtggtatat gatggtgctc ccatttttga gcccatcaaa ggcacttcca tgcagttggc
     3181 agtgaatacc accaccacag tcttccaggc aaacggtcgc ttttttgctt tggacaatgg
     3241 catttggttt gtgtcggaca aggcaaccgg gccgtgggtt ttgagcgacg aacgtcctga
     3301 agaagtaaac aaggtgccgc ctgactgcag ggcatacaat gcgcagcatg tgcacatcta
     3361 cgaaagcaat gaaaattatg tggtgacagg ttacacccaa ggctacaccc aaacatttgt
     3421 gcaaggcccc accattgtgt atggcactgg ctggatgatg agcccatggg taggccctgt
     3481 actctttgta cctcctccca tgatctgggg ttttggtttt cgctggcatc cctggtgggg
     3541 ctggagcatg ggctttggct tcagggtaaa tatgttttgg ggcatgggtg gtgtacgtgt
     3601 aggtgtcgga tttggcatgg gcgtcggctt ctttggtcct cccatgttca ggccacccat
     3661 cgttgtggtt ggtgtaggtc gcaggcctcc tatgggtggc tggggcaggc ctcccgctgg
     3721 cggttggggc cgaccaggca ttggtggcgg caacaacaat aacatcaaca ttggaggtgg
     3781 cggtggcaat accatcaaca tcggcaatgg aaatggcaat aatatctata acaaccggcc
     3841 tggcgtggta aacaacaacc gtggcgaccg acccggcaac aggccggggg caaacgctgg
     3901 tggcaataat acacgtcccg gtgccggggc tggcaatgcc acccggccag gtacagggga
     3961 aggaaggcct gaaacccgcc cgggtacagg tgcggcacgc cccggaaaca acaacggcaa
     4021 tttgaccggt gggcaaaccc ggccaaccac cagggaaacc cggccatcga gagaaccgaa
     4081 taacgtgatt acagacagga atggggatgt attccgccgc gaccaaaacg gcaactggaa
     4141 ccaacgcaat ggcaataact ggcagcagaa taaccggaac aacaaccggc aactggacca
     4201 gatgcagcag ggtcgtgaca gaagcatgaa ccgacaaaac acctaccagc ctccaaggac
     4261 cagcccaagc gccaggcccc cagccaatag ccgaccgccc agtggcagcg gtacaagacc
     4321 acccagtggt ggtacacgcc cgtccagcgg cagcaggcca cccagcagtg gttcccggcc
     4381 agccagcagt ggaaggcgtg gctaaggtta ttcagacttg ttacattgcc aggaggctgt
     4441 ccgaaactgg acagcctcct gttattttac agcagatgtg tagtttgatg caacgcacaa
     4501 ggatgcaccc gctattggcg ctgttgagtg atgatgaaac tattttttgc tgaagtgtac
     4561 cattgatcct cctttgtagt gcaatcaggg tttaggttct tttgataagt caggcaattc
     4621 agccatccta catcagcggt tcagcagtgc aggcaatcct gacgaaattg tcatcgacag
     4681 tcccgttgtc aatgacagga caccctcaac accggctgcg gagcacaact ttgcaatcac
     4741 tattgcccaa tgctccttgg attgttgcaa acgccagcaa agaaagcggg aacctgctca
     4801 atgtcataaa aagcaatctg cctgtggcca tacatttggc tttaccaaaa aaacaacctt
     4861 atgaaaaaaa tcacattact tgccctggca atgctacttg gagccagcag catctatgct
     4921 caggtgggcc agccgggtcc aaaattctat ttgaacggct ttgcaggtta tacattcgac
     4981 gagagtttct atggcggata caacgaatgg acttacaaag gaaatgtaca ctatggcggt
     5041 tctgcagaat ttgtattgca aggtgcctct acccgttaca acgaacgtac tgttgaatta
     5101 ctctaccaga gtatgagttc tgacttggat gcatacgcat actataacaa taataataat
     5161 agggttcaag gaagcatgac ggtgagctac cttaccctgg gcatcaacaa ctatatgggc
     5221 aaaagccgca aggtgatggg ctttggtggt ttagccatgg gtgccgcttt tttcaacggc
     5281 gatgccaaag tagataatac atcccaatct gcttcatcca caaagttcgc catcaacctt
     5341 aaaggtggtg gccgctttat gtttaccgat aatattggat tgaaaattta cgcccagttg
     5401 aataccgtag tgggcggtgt tggaggtggc ttctacttcg gcaccggagg cagtggcgca
     5461 ggtgtaagca cctattcttc catggtacag tttggcctcg gcggcggact taccgttggc
     5521 cttggtgccc ccaaagcagc accagtgtct cctaccaatt aatcgaattg gaacatattg
     5581 atattacaag gcaggcagta tctctacctg ccttttgtat tttcatatag taaaacctcc
     5641 tacatgaaaa agaacctccg gtactatgtc gcctgcttta tcacgatagg ctcaatattt
     5701 acctcgccac tccatgcaca acaaggctgg cccagggaaa ttcccatact gaccaacggc
     5761 tccattacca tatacccgcc ccaacccgaa agctttagtg gcaacaagct atctgcccgg
     5821 gcagcggttt cagtaaaagc ctccaaagac gccgaacccg tttttggcgc tatctggatg
     5881 gaagcttcca ctcaaaccaa ccgggagaca cggatggtgt cggtagaatc cattgatgtg
     5941 aagcaggtga aattccctgg tcaaaccgat agtgcgaaaa ttgaaaagtt cagccagttg
     6001 ctggaaactg aaatgcccaa atggcatctc accgtttcta tggaaacgct gacaactgcg
     6061 ttggaaaaag aagggataaa ggcttctaca gatttgaaaa cagatccacc caagatcatt
     6121 tactccaaca aagtttctgt tttggtatta attgacggcg aaccaaaact ggagaaggat
     6181 aaaaacatgg ggcttgacaa agtggtcaac agccccttcc caattgtaaa agagggaggc
     6241 aattattacc tgttggtcag cagcttctgg tatgtgtcca acaatatcaa aaccggttgg
     6301 aaatacacta cccaactgcc atcgaagctg acgcaactga acaaggaaat tgaaaagcag
     6361 cgcaaagaac aggaagccag caacaaatcg gtagccctcg ctgccaaaga ggccaagccg
     6421 gcagaagaag tagtcgtctc aaccgaaccg gccgaactga tacaaacaga tggcaacccg
     6481 gaatacaaaa gcatcactgg caccagcctg ctgttcatta ccaactcgcc caacgatgtt
     6541 tttaaagaca tcaacagcca gaaaacctat gtattgtttg ccggccgctg gtacagtgca
     6601 tccagcctca aaggcccatg ggcctacgta cctgccgaca aattgcctgc cgattttgca
     6661 gccataagag aaggaagcga caaggacaat gtgctggcca gtgtagccgg aacaaacgcc
     6721 gccaatgagg ccgtgctgga cgccatgata ccgcagacag ccactgtaaa ccgcagtaca
     6781 gccaaaccct ccgaagaagt gaaatatgat ggtacccctc aatttgaaaa aatacagggc
     6841 accaacctgg aattggcagt aaataccaag agcaccgtgc ttcgccagaa tgggatttat
     6901 tacatcgtcg acaatgggat ttggtttgaa agcaccagcg ccaatggacc gtggcgggta
     6961 tccaccaaaa gacccaccga cgttgaaaat attccagcca gcagttcggc ctacaacacc
     7021 aagtatgtgg aagtgtacga tgtgcaaccc gatgtagtgg tggtgggata caccccgggc
     7081 tacatgggat catacgtgta tggccccacg gtggtgtatg gcaccggcta tccttacaat
     7141 ccttggtttg gcccttacta ctacccacgc cccgttacct acggttttgg catgagctat
     7201 aatccatgga caggatggag cttcaacttt ggcatgagtt ggggaccctg gcattttgga
     7261 gtgagcagtg gcggcggcat gtacttcggg tttggttttg gcggctggtg cggtcccccg
     7321 gtttatcgtc cgccctatcg gcctccgtat tggggaggtg gttattacgg tgggggtaat
     7381 cactggggca ataacaacat caacattggt ggtggcaata ccatcaatat tggtgagatc
     7441 aacattggaa acggcaacaa caatatttac aacaagcgtg gccccggcgt caacacccgt
     7501 gatattcaac gccagcccgg catgaatacc ggaggtgcca atgcaggcgc tcgtccttct
     7561 gcaaaacctg ccaccaggcc ttccaccagt ccatcaacga ggccggccac acaacccgcc
     7621 gccggcaaca aaatgcaggg tggtggcaac acaaaaattc ccaatgcgcc gtcatcactt
     7681 gaccggtccg ggcccaggga tgtttacacc gacaagagcg gcaatgtata caagcgggat
     7741 accgatggca actggaacca gaacaacaaa ggcaataatt ggcagcccgc taacaacaac
     7801 gggaccagag accttgaccg tatgcagcaa caaagagacc gtagtcgcag ccgtgacaac
     7861 agtttccaaa gcaacaagtc tatgcaatcg agaccagcta ccatgaaccg cggcggtgga
     7921 ggcgcaaggc cagctggtgg tgcaggcatg cggagaagat aaattccatg taatcactat
     7981 aaaagtccgg catggccgga ctttttcttt tgatgcaggt attgccctta ccaggcaaag
     8041 cgtatagcta cacccaccca atcggtagtg gaataatgcg ctccaataaa ggtgacggat
     8101 ggctgccagt ccaggctaag attgatggga gcacctttga atttgtaatc aagtcccaat
     8161 acgccgtcca ggccggccgc tgcacggcct tccggtctgt attcatccct gtatttttca
     8221 ttccaggaat ctatgtgtgc accccctccc acataccatt tcaaccctgc cgcccctgtg
     8281 aaatttccat gccattcgta caagcccgtt gccctgaaac cgttgcgcca aaaatacccg
     8341 agaccttcaa tggctgcatt gctttttaca aaatgcttga tggttacagc agtaggatga
     8401 aacttgaatc cagcggctgt tttataagca tacccggtgg cctgcgcctg tgttttttca
     8461 atagtaaaaa tcggcagcat tacaacggct gcaatgatgg acaatctcat aagtgtttcc
     8521 tttgaattgg tctattgaaa acaccttgcc aaatcattag accatcaact gctttcatac
     8581 atctttaacg cagatgaaaa atctatcata aaaaaagagc ggatgcatcc tgcatccgct
     8641 cttcagtaaa aaccaacctc gcattacttg ataccgtact tgtacttgta acgctcaaac
     8701 atttgcttgt gcttgtctac cagctcgatg ctgcggccct gtatgaatgc atgcgtgatg
     8761 atgctgctct tcatgtccag gatatcacca gcgcttacta cgatgttggc atccttgcca
     8821 gcttcaattg atcccgtgcg attgtcgatg cccagcactt tggcagcatt caaggtaatg
     8881 gcagtcaatg cctcctcttt gctgatgcca taagcggcgg cggtaccaga gttgaaaggc
     8941 aggttgcgtc cgcggttttg tgagtcatcg tcgttgatgc aataca
//
LOCUS       DATIQF010000682         1509 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_26242, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000682 DATIQF010000000
VERSION     DATIQF010000682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26242"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            254..814
                     /locus_tag="VLL95_11600"
     CDS             254..814
                     /locus_tag="VLL95_11600"
                     /inference="COORDINATES: protein motif:HMM:NF024879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper domain-containing protein"
                     /protein_id="HSR39551.1"
                     /translation="MKRLKLTLSIAMMAIFWPVATLMAQTQNQPQRPPALPDTSRMAY
                     NAMSVGLNLMVFPANGQSQQQQKIDEFDCYVWAMERSGVDPLNLPKVEAAPTPSGPTG
                     AAVGGAARGAAAGLAIGAVAGNAGRGAAIGATAGAIGGRSAGRQAQAQQRNQAQANAN
                     KEQQAIWDSFVRAFSACISGKGYTVK"
     gene            885..1391
                     /locus_tag="VLL95_11605"
     CDS             885..1391
                     /locus_tag="VLL95_11605"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSR39552.1"
                     /translation="MKHIFLPLIAMVTLMACNNASNQQDSESIAIVEKYKAAVEAKDI
                     KAMDSLLADNYMGYGPSVSDSTNKADAMANWKFNVDNLYESITFSNMQNLPKTVTEST
                     GGVAPGNWVSSWSLATFKYKDGRGPVQMWVNVEYRIENGKIVYTRTFYDEADVERQLN
                     AAAPASAQ"
BASE COUNT          422 a          396 c          368 g          323 t
ORIGIN      
        1 cattgcgcca tgcgataatc atcccgttgc attcttcacc caataactcg ataccgggac
       61 ccatcgtctc gcggcgatgc atttactatg actgttttga aagcggcacc tgtttgcaat
      121 gattccatga attatggtac atttatttgc agctttgcta ttgattgaac ctgaccaacc
      181 taattttcat tgcaaaccga tcttaccata cagccatagc atcggatttt aagaacgaat
      241 acaaatgaaa aaaatgaaac gactgaaact caccctctca atcgccatga tggccatttt
      301 ttggccagtt gccacattaa tggcacaaac acaaaaccaa ccacagcgac cgccggcgtt
      361 gcccgatacc tcacgaatgg catacaacgc gatgtcggtg gggttgaacc tgatggtttt
      421 tcctgccaac gggcagagcc agcaacaaca aaagattgat gaatttgatt gttatgtgtg
      481 ggccatggag cgctccggcg tagatccgct caatttgccc aaagtagaag cagcccccac
      541 tcccagcggg cctaccgggg ccgccgtggg tggcgccgcc cggggagccg cggctggttt
      601 ggccattggg gcagtagcag gtaatgcggg caggggcgct gccattggtg ccaccgcagg
      661 cgccataggt ggccgcagtg ctggccgaca ggcacaggca cagcagcgca accaggcaca
      721 ggccaatgcc aacaaagagc aacaagccat atgggatagt tttgtacggg ccttttcggc
      781 ctgtatatcc ggcaaagggt ataccgtaaa ataacagctg aatctaaaaa cgggtgtcaa
      841 gacccggcaa acaatcaact caaacttcta aagacatctc tgtcatgaaa catatcttcc
      901 ttcctttaat cgccatggtc acgctgatgg catgtaataa cgccagcaac cagcaggaca
      961 gcgaaagcat agcgatagtg gaaaaataca aagcggccgt ggaggccaaa gacataaagg
     1021 ccatggacag tttgctggcc gacaattaca tgggttatgg cccctcggta agcgattcta
     1081 ccaacaaagc cgatgccatg gccaactgga aattcaatgt cgacaacctc tatgagtcca
     1141 tcacattttc aaacatgcaa aacctgccaa aaacggtgac cgaatctacc ggaggtgtgg
     1201 cgcctggcaa ttgggtatcg agctggtcgc tggccacttt caaatacaag gatggccggg
     1261 gccccgttca aatgtgggtg aacgtagagt accgcattga aaacggcaaa atagtataca
     1321 cccgtacttt ctacgatgaa gccgatgtag aacgccagtt gaatgcggca gcacctgctt
     1381 ccgcgcaata acacaggcag tagcttccta ttcatactgc aaagcccgcc acccaaaaca
     1441 tagtggcggg ctttgttatg tcctatttat aatgcaacag ggcaatcaac ttatttgccc
     1501 ggacagagg
//
LOCUS       DATIQF010000683         2672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_101870,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000683 DATIQF010000000
VERSION     DATIQF010000683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2672
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101870"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..978
                     /locus_tag="VLL95_11610"
     CDS             <1..978
                     /locus_tag="VLL95_11610"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSR39553.1"
                     /translation="VYIESVELFLNDIDWLSRRQFGSDENNLGIHFNAVNLMHPEKLR
                     FQYMLEGLGNTWITTSDRYVNFPKLPPGTYHFKVRASVNNQFMLAPVAIYTFTIDKPV
                     WQRWWFLALATLLLSGIIIAIIRYRDHQRESVQALRQAHLQSQLETLRSQVSPHFFFN
                     SLNTLMSLIDEDKKQALQYTAHLSDFFRRIVQLRNEDLILMKEELELVEDYLFIQRQR
                     FGNGIQLHNKLNEEVMHSKKIAPLTLQLLIENAIKHNAFTEQQPLHITLHTERDYLVV
                     SNNKQQKIGKEPGTGMGLQNIKHRYRLLTMQEVLVHDDLHYFRISLPLL"
     gene            995..1756
                     /locus_tag="VLL95_11615"
     CDS             995..1756
                     /locus_tag="VLL95_11615"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSR39554.1"
                     /translation="MEVWIIEDEIPAAKRIAKLAEQADASIRITATYATVADTVAALR
                     QHQPDLLLMDIHLADGNSFHIFKQAEVQCPVIFTTAYDEYAIEAFKHNSVDYLLKPVK
                     EEELNAAIAKYKRIHAKPALPNLDELIKTLASPARSYKTRFVVRYGEHLKTIDIAATA
                     YFYTENKASFLITHDNKRYIVDYNMDELEQLLDPKRFFRINRQFIIAVDAIAEMLTWT
                     KARMLVKLNPPTKLETIVSSERAAAFKQWLDDALP"
     gene            1864..2259
                     /locus_tag="VLL95_11620"
     CDS             1864..2259
                     /locus_tag="VLL95_11620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39555.1"
                     /translation="MKRKYLLYAVLLILFTACTRNSDSLVTPNSSVAAAAGQWKVIFY
                     WDKKDETSNFAGWAISFQADGKLTATKGGTTVNGTWSQTSSRFNLSFGTDPLLSDLAG
                     NWQIISITDSLIKLKDDNPSQDDELHLGK"
BASE COUNT          700 a          736 c          617 g          619 t
ORIGIN      
        1 gtgtacatcg aaagcgtgga gctgtttctc aacgatatcg actggctgtc tcgccggcag
       61 tttggcagcg acgaaaacaa cctgggcata catttcaatg cggtcaacct catgcacccg
      121 gaaaaactga ggtttcaata catgctcgaa ggtttgggca atacctggat caccaccagc
      181 gacaggtatg tcaattttcc caaactgccg cccggcactt accatttcaa agtaagagct
      241 tctgtcaata accaatttat gctggcacct gttgccattt acactttcac cattgataaa
      301 cctgtgtggc agcgttggtg gttcctggcc ctggccacgt tgctgctttc cggcatcatc
      361 attgccatca tccgctatcg cgaccaccag cgggaaagtg tgcaggcgct caggcaggcg
      421 catttgcaga gccagctcga aacactgcgc agccaggtga gcccgcattt ctttttcaac
      481 agcctcaaca cccttatgtc gctgatcgac gaagacaaaa agcaggcgtt acaatacacg
      541 gctcatttga gtgatttctt ccggcgcatt gttcaactgc gcaatgagga tctcattttg
      601 atgaaagaag aactggaatt agtggaagat tacctgttca tccaacggca acgctttggc
      661 aatggcattc aactgcacaa caaactgaat gaagaagtga tgcacagcaa aaaaatagcg
      721 ccactcacgc tgcaactgct gattgaaaat gccatcaagc acaatgcctt taccgagcag
      781 caacctttgc acattacttt gcatacagaa agagattacc tggtggtgag caacaacaag
      841 caacaaaaga ttggcaaaga gcccggtaca ggaatgggcc tgcaaaacat aaaacaccgt
      901 taccgtttgc tcaccatgca ggaggttttg gtgcacgacg atttgcacta tttcagaata
      961 agcctgccgc tgctgtagcc acaaaacacg ctttatggaa gtttggatca ttgaagacga
     1021 aataccggcc gccaaacgca tcgccaaatt ggcggagcag gccgatgcat ccatacggat
     1081 cactgccacc tatgccaccg tggccgatac agtggctgcc ttgcgccagc atcagcccga
     1141 tctgctgctg atggacattc acctggccga tggcaacagc ttccacattt ttaagcaggc
     1201 tgaggtgcag tgccccgtca tcttcaccac cgcttacgac gaatatgcca ttgaagcctt
     1261 caagcacaac agtgtcgact atttgctgaa gccagtgaaa gaagaggaat tgaatgccgc
     1321 cattgccaaa tacaaacgca ttcatgccaa gccggctttg cccaaccttg atgaactgat
     1381 caagacactc gcatcgccgg cacgatcgta caaaacgcgt tttgtggtgc gctatggcga
     1441 acacctcaag accatcgaca ttgcggcgac ggcctatttc tataccgaaa acaaagccag
     1501 ctttctcatc acccacgaca acaagcgata cattgtagac tacaacatgg acgaactgga
     1561 acaactgctg gatcccaaac ggttcttccg catcaaccgc cagttcatta ttgccgtgga
     1621 tgccattgcc gaaatgctca catggaccaa agcccgtatg ttggtaaaac tgaatccgcc
     1681 caccaaactc gaaaccattg taagcagcga aagagcggca gcctttaagc agtggctcga
     1741 tgatgccctg ccctgattgt ccggtttcag gtacggcaat tcccgtttcg gtacgtttcg
     1801 ttcgcctcgt ggcagaatat cttttcacat ttggtttgtc aatcacccga taaaccattt
     1861 gccatgaaaa gaaaatactt gttgtacgcc gttctcctga tccttttcac cgcctgcacc
     1921 cgcaattccg attcgctggt tacgcccaat agttctgtag ctgctgcggc cggccagtgg
     1981 aaggtcatct tctactggga caaaaaagac gagacctcca atttcgccgg ctgggccatc
     2041 agtttccagg ccgatggcaa gctgacagcc accaagggcg gaaccaccgt caatggtacc
     2101 tggtcgcaaa ccagttccag gttcaacctc tcttttggca ccgatccgct gttgagcgac
     2161 ctggccggca actggcagat catttccatt accgatagcc tgatcaaact gaaagacgac
     2221 aatccttccc aggacgacga attgcacctg ggcaaataat tccatacgat acgggtttgc
     2281 tgagaatgag ccgctgcctc cgggtggcgg cattttgttg tgcccttgcc tattccctca
     2341 tttgcataca tttgcacccg caggcggatt tgtttattgt tcggcctgcg ctactaaaaa
     2401 ccgaactaat aaacgatgtg tgtctccctc cgcggtgttc cgctcgttta tcgttcaata
     2461 ctttttttgt tgaagtcggc tgcaggaatg ctatggggca ttgttgcgtc gcacacttca
     2521 acggcagtgc aagaaggagc aaactatgag caacattcgc gaagaactga gcaaacgcat
     2581 actcatcatc gatggcgcca tgggtaccat gatccagcgc cacaaactca ccgaagctga
     2641 ctaccgcggc gagcggttca aagattggcc ca
//
LOCUS       DATIQF010000684         2462 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_223833,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000684 DATIQF010000000
VERSION     DATIQF010000684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223833"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            728..2086
                     /locus_tag="VLL95_11625"
     CDS             728..2086
                     /locus_tag="VLL95_11625"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HSR39556.1"
                     /translation="MKPMIDILLPPVVNYIDKNPVANGRNIIRFMNAFGLGKVQQSAK
                     NNLMAMLNDPENPYRQSLENAHSQLNPNVRKKLLGVFLMKSFLTKDKRLKLAAELDQN
                     IPWAVLMDPTSACNLHCIGCWAADYSKKDTLPFELLDRIINEGKQIGTYIYIFSGGEP
                     LIRKKDIIRLCDKHPDCYFISFTNGTLIDEAFAKEVARVGNFAPAISIEGFEEMTDFR
                     RGQGTYQRVIKAMDIMKAHGNFFGYSATYHRRNADMIASDEFVDLMQEKGCLFGWYFT
                     YMPVGSDARPELIVTPEQRAYMYHRIRQVRKSRALFLMDFWNDGEFVGGCIAGGRRYL
                     HINARGDVEPCAFIHYSNVNIRDVSLLEALRQPIFMEYRKHWPFNQNPLRPCPCLDNP
                     EKLKQMVNCSCAVSTQINDPESVEALTAKCMEHSSGWAPVADDLFFHKKTTRPLEEAP
                     VA"
     gene            2166..>2462
                     /locus_tag="VLL95_11630"
     CDS             2166..>2462
                     /locus_tag="VLL95_11630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39557.1"
                     /translation="MIFFLGLWALGAGQTPLYAQPKIPAAADQALFEILNLRTQTARN
                     IIAQGRAAEPNNLYYDYLDNWMEVIELALYEHDERYGKYLQSFEERIRHVKATGN"
BASE COUNT          661 a          658 c          594 g          549 t
ORIGIN      
        1 aacaaacaag gaacctgata agcaaaagca tcaatgcata taataagcta agacctcatg
       61 ccagctgcga ttatttgacc ccggaagaag cacacttaaa atcaggaaca atgaataaga
      121 gatggaaaac ctataacgaa acttatgcct accaagaagg gcttgtatag catttgcagg
      181 actaaaaatt atatttgtat aatccaatca ggatttattt cataacctgt atagctattt
      241 taggacgagt catcccaccc cctgccagcc accaacagta tggatactgc ctatcaaagc
      301 cctacatagt gcctgaggag tggcacttat ccacattttg ggtggcaaaa aaagagaatc
      361 gacggctgca atggcgatcc cgaaacctgg cccgaccggc tggtagatgg gatgcgccag
      421 ctgcggctca aacaatagcg tttgcgtaat tcatacacgc cagcccaatc agcgttggcc
      481 catttatgcc ggtggcattt aagccctcat tttctgaggt ttgtcatgtt ttcagaagac
      541 gggaaatatt aacttttgtc aacgtgccga tgcagggtgc agtaagaaaa tcgtgacgac
      601 gggtagcggc tggcaccatt ggtttgtatt cattgccatc cggtcaatca tcaccctttt
      661 catcccggcc aaagctgcgc atgatgccat ccggcaggag cttgtttcac gattaaactg
      721 ctttgtcatg aaaccaatga ttgacatcct tctcccaccc gttgtcaact atatcgacaa
      781 gaacccggtg gccaatggcc ggaacataat ccggttcatg aatgctttcg gcctcggtaa
      841 ggtgcagcaa tctgccaaga acaacctgat ggcgatgctc aatgatcctg aaaaccccta
      901 ccggcaatcc ctcgaaaacg cccacagcca actgaacccc aatgtgcgga agaaactgct
      961 gggcgtgttc ctgatgaaat cttttctcac caaagacaaa agactgaaac tggctgccga
     1021 actggaccag aacattccct gggcggtgct catggatcct acctcggcct gcaacctgca
     1081 ctgcatcggg tgctgggccg ccgactattc caaaaaagat acgctgccgt ttgagttgct
     1141 cgacaggatc attaacgaag gcaagcagat cggcacctat atctacatct tttccggcgg
     1201 cgagccactc atccgcaaaa aagacatcat ccggctttgc gacaagcacc ccgactgcta
     1261 tttcatctca ttcaccaatg gcacactcat cgacgaggcc tttgccaaag aggtggcccg
     1321 ggtgggcaac tttgcccctg ccatcagcat tgagggcttc gaagaaatga ccgatttcag
     1381 gaggggtcag ggtacttacc agcgggtcat caaagccatg gacatcatga aagcccatgg
     1441 caatttcttt ggctattcag ccacctacca tcgccgcaat gctgatatga tcgcctcgga
     1501 tgagtttgta gacctgatgc aggaaaaagg ctgcctgttt ggatggtatt tcacctacat
     1561 gcccgtgggc agcgatgccc gccccgaact gatcgtgacg cctgaacaac gggcctacat
     1621 gtaccaccgc atccggcagg tgcgcaaaag ccgggccctt ttcctgatgg acttctggaa
     1681 cgatggcgaa tttgtgggcg gctgcattgc aggcggcagg cgctacctgc acatcaacgc
     1741 caggggcgat gtggaaccct gcgcattcat ccattactca aatgtcaaca taagagatgt
     1801 ttcgctgctg gaagcactgc gccagcctat tttcatggag taccgcaagc actggccctt
     1861 caaccaaaat ccgcttcggc cctgcccctg cctcgacaac cctgaaaagc tgaaacaaat
     1921 ggtcaactgt tcctgcgccg tttccacgca gatcaatgac ccggaatcgg tggaagcact
     1981 gaccgccaaa tgcatggaac actccagcgg gtgggcgccg gtggccgatg accttttctt
     2041 tcacaaaaaa accaccaggc ctttggaaga agcccctgta gcctgagcga actttataca
     2101 gaattggagg tagcggtatg tgtgtgggct gtgcatcatg gataaagcat tggcgaaaag
     2161 cctttgtgat ttttttcctc gggctatggg ctttgggagc agggcaaact ccattgtatg
     2221 cgcagccaaa aatacctgcc gctgccgacc aggctttgtt tgaaatcctg aaccttcgta
     2281 cgcaaacagc ccgtaacatc attgcacagg gaagggccgc agaacccaac aacctgtatt
     2341 acgattacct cgacaactgg atggaggtga ttgaactggc cttgtacgaa catgacgaac
     2401 gctacgggaa atacctgcaa tcatttgaag agcggatcag acatgtgaaa gcaacgggca
     2461 at
//
LOCUS       DATIQF010000685         1727 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_299834,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000685 DATIQF010000000
VERSION     DATIQF010000685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299834"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..746)
                     /locus_tag="VLL95_11635"
     CDS             complement(<1..746)
                     /locus_tag="VLL95_11635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39558.1"
                     /translation="MTNQLSAGKKLLVAPLDWGLGHATRCIPVVKTLVANGCEVVLAA
                     SGPQAALLREAFPALEIIDLEGYGIVYSRRGGWWKIVSQLPKIAAAIRKEHRWLQKLL
                     QQRNFDAVISDNRYGLYTRHCRTVLITHQLQPALPAGWGWSLPLARRLFHRLIARFDE
                     CWIPDVADPKQGLSGELGHPEMMPSTHCRYVGWLTRFAPVATEPAAEPFVLALLSGPE
                     PQRTVLEEKIAGLLANETMPVVLVRGLPQDA"
     gene            868..993
                     /locus_tag="VLL95_11640"
     CDS             868..993
                     /locus_tag="VLL95_11640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39559.1"
                     /translation="MANKIKWGLFIVTLVAFTACASGGRSGKNCGCPQKSGMVGY"
     gene            1015..1266
                     /locus_tag="VLL95_11645"
     CDS             1015..1266
                     /locus_tag="VLL95_11645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39560.1"
                     /translation="MIRRGNMNLVVVHRGHWNDNVLQAEVDSLEVLLRTAMQLSRVAH
                     CTEVADLNRYRLYTQHDKVVSILQSKPAHKPFIFALNLN"
     gene            complement(1340..>1727)
                     /locus_tag="VLL95_11650"
     CDS             complement(1340..>1727)
                     /locus_tag="VLL95_11650"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: protein motif:HMM:NF014296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0006555 - methionine metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HSR39561.1"
                     /translation="EIDLKYLKAKVDAGADYIMTQMFFDNQKFFEFEKACRSIGINVP
                     IIPGLKPMTTKKQLTVIPRIFHVDLPTELSLEIMKCKTDAEVEKVGTEWLINQSKELK
                     QQGVPVLHYYTLGKPRVIWNVVKEVL"
BASE COUNT          409 a          471 c          434 g          413 t
ORIGIN      
        1 gcatcctgtg gtaggccacg caccaacacc accggcatcg tttcgttggc cagcagtcct
       61 gctatttttt cttccagcac ggtgcgttgt ggttcggggc ccgacagtaa tgcaagtacg
      121 aatggttctg ctgccggttc agttgccaca ggtgcaaaac gagtgagcca gcccacgtaa
      181 cggcaatggg tggaaggcat catttccggg tgtcccaatt ccccgctcaa tccttgtttc
      241 gggtcggcca catcgggtat ccagcattca tcaaagcggg caatcaaccg gtggaacaag
      301 cgcctggcca ggggcaggct ccaaccccaa cccgcaggca atgcaggctg caactggtgg
      361 gtgatcaata cggtgcgaca atgccgggta tacaacccgt agcggttgtc ggatatcacc
      421 gcatcgaaat ttcgttgctg caaaagtttc tgcaaccacc ggtgctcctt tcggatggcc
      481 gccgcaattt tgggcagctg gctcacaatt ttccaccagc ccccgcgccg gctgtacaca
      541 atgccatacc cttccaggtc aattatttcc aacgcaggaa aggcttcgcg aagcaaagcc
      601 gcctgtggcc cggaggcagc cagcaccact tcgcagccat tggctaccaa tgtttttacc
      661 accggaatgc agcgggtggc gtggcccagc ccccaatcga gtggtgccac caacagcttt
      721 ttcccggcag ataattgatt ggtcatggta aatttttccc gcaggcagat atgattgagc
      781 cgcaataatc gtttacaaca tttgctggcg atacttgcca gaaatagtaa aattgtagtt
      841 tactgccgaa tccaaaaaaa caaaaccatg gcaaacaaaa taaaatgggg cctgtttata
      901 gtaacactgg tagcatttac cgcctgtgcc tccggcggtc gcagcggcaa aaattgtggc
      961 tgcccgcaaa agtctggcat ggtgggttat taaaaccatt caggaagcag tgatatgatc
     1021 agaagaggaa acatgaacct ggtagtagtg caccgcggac attggaacga caatgtactg
     1081 caggcagaag tggattcgct ggaggtactg ttgcgtaccg ccatgcaatt gtcacgagtg
     1141 gcccattgta ccgaagtggc cgacctgaac cgctaccggc tctacaccca gcacgataaa
     1201 gtggtgagca tcctgcaaag caagcccgcc cacaaacctt tcatctttgc gctcaacctg
     1261 aactgagccc atcaatcata gtcataaaaa aaccgccttg tactgcaagg cggtttttga
     1321 ttttataacg tggtcgtttt tacaatactt ctttcaccac attccagatc acccgtggct
     1381 ttcccagcgt gtagtagtgc agcaccggca cgccttgctg cttcagttcc ttcgactggt
     1441 tgatcagcca ttcggtacct actttttcca cttccgcatc ggtcttgcac ttcatgatct
     1501 cgaggctcag ctccgttggc aggtccacat ggaaaatgcg gggaattacc gtgagctgct
     1561 ttttggtggt catcggcttc aggcccggaa tgatgggcac gttgatgcct atgctgcgac
     1621 acgctttttc aaactcgaag aatttctggt tgtcgaagaa catctgcgtc atgatgtaat
     1681 cggcgccggc atccactttg gccttcaggt atttgaggtc aatttca
//
LOCUS       DATIQF010000686         2233 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_147955,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000686 DATIQF010000000
VERSION     DATIQF010000686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2233
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147955"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..597
                     /locus_tag="VLL95_11655"
     CDS             <1..597
                     /locus_tag="VLL95_11655"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSR39562.1"
                     /translation="IVWNRTEWLDGDKRRTELFVFGQNANTRQSVFTTKYPDYVQRGN
                     NNPIFRYAEVLLMLAECEARLGSGVSQRAIDLLNVVRNRSIPSPATNQYTAASFATQT
                     DLVRAILWERRFEFAMEGKRWMDIHRTSNDPIAALRPGGIPAKLPNGADGTGIYGIGV
                     ALPATLQPAIPYSDYRFIWPIPADEITQNPIITQNPGY"
     gene            complement(685..1818)
                     /locus_tag="VLL95_11660"
     CDS             complement(685..1818)
                     /locus_tag="VLL95_11660"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AhpC/TSA family protein"
                     /protein_id="HSR39563.1"
                     /translation="MKRHSCINTLGWLTLSLGLAACGDQAQQNLVVEGTILHAKGKQV
                     MLAELPYASPNRIVVDSASIDSNGHFRLQSVQSQQNIYQLFVVNGPGILLINDANNLQ
                     VEMDAEAPEKYVVNGSAASNSIKALYAQFTPLYKQWQLASTKAEASLQDKNLSDSLRS
                     VALQQRDEAHAALKGLFKNYLSNQPNSTARYFALGMARQFLSPSDWAAQLQLADSLFP
                     SHPGITLLKVNAASSTVQGSHLLNKPVPELTLPDSTGKLVSVSAFRGRWLLIDCWASW
                     CAPCRKENPNILAAWRKYNKKGFSVLGVSLDKDRAAWINAIKIDSLQWQHVSDLKYWD
                     SRAVAAFDIQSLPFNLLVDPKGEVKAINLTDSLLDKTLNSFIK"
     gene            complement(1832..>2233)
                     /locus_tag="VLL95_11665"
     CDS             complement(1832..>2233)
                     /locus_tag="VLL95_11665"
                     /inference="COORDINATES: protein motif:HMM:NF014674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39564.1"
                     /translation="MIGPVKSWLNEQQAEMEQFPVGPGQMAAVIDIVQSGKVNFSMAA
                     TRLLPALIKEPNAAVAALAQSLGIIQASDSGELEAWVDAVLASMPDKVKEYQKGKKGL
                     IGLFVGEVKKHSKGKADPQATTKLLEEKLRS"
BASE COUNT          466 a          583 c          592 g          592 t
ORIGIN      
        1 attgtttgga atcgcacaga atggctggat ggcgacaagc gcaggacaga acttttcgtt
       61 ttcggacaga atgccaacac tcgccagagt gtgttcacta ccaagtatcc tgattatgta
      121 cagcgtggta ataacaaccc catcttccgc tatgctgaag tgttgttgat gctggctgaa
      181 tgtgaagccc gcctgggttc aggtgtttcg cagcgtgcaa ttgacctgct gaacgtggtg
      241 cgcaaccgca gcattccttc acccgccact aaccagtaca ctgccgcttc ttttgctaca
      301 caaaccgacc tggttcgtgc catcctgtgg gagcgtcgtt ttgagttcgc tatggaaggc
      361 aagcgttgga tggatatcca ccgcacttca aatgatccta ttgctgcttt gcgtccgggt
      421 ggtattcctg ccaaattgcc aaatggtgcc gatggcactg gcatctacgg aattggtgta
      481 gcgctgccag ctactttgca gcctgccatc ccttacagcg attaccgttt catttggcca
      541 attcctgctg atgagatcac tcagaacccg atcatcaccc agaatcctgg ctactaattc
      601 taactggaat tatacaacca taaaagaaaa tgccttccct acggagggca ttttcttttg
      661 gggtaaaagc cagattgatc aggcttattt gatgaaactg ttcaacgttt tatcgagcaa
      721 tgaatcggtg aggttgatgg ctttcacttc tcctttggga tcgaccagca aattgaaagg
      781 aagcgattga atgtcgaatg ctgccacggc gcggctgtcc cagtatttca aatcactcac
      841 atgctgccac tgtagcgaat cgattttgat ggcattgatc caggcggccc ggtctttatc
      901 gagggaaaca cccagcacgg agaagccttt cttattgtat ttgcgccagg cggccaggat
      961 gttggggttt tctttccggc agggcgcaca ccagctggcc cagcagtcga tgagcagcca
     1021 gcggccacga aacgcactta ccgacaccag cttaccggta ctgtcgggta gggtgagttc
     1081 gggcaccggc ttgttgagca gatggctgcc ttgcaccgtg gaactggcgg cattcacttt
     1141 caacagggtt atgccgggat ggctgggaaa caaagaatcg gccagttgca gttgggctgc
     1201 ccaatctgaa ggcgataaaa actgccgggc catacccaag gcaaagtagc gggcagtgct
     1261 gttgggctgg ttggaaaggt agtttttgaa cagccctttc aatgctgcat gggcttcgtc
     1321 gcgctgctgc aatgccacgc tgcgcaggct gtcgctgagg ttcttgtcct gcagggaggc
     1381 ctctgcctta gtgctggcca actgccactg cttgtacagc ggtgtaaact gtgcgtacaa
     1441 tgctttgatg gaattgctgg ccgctgaacc attcaccacg tatttttccg gtgcttctgc
     1501 atccatttcc acctgcaggt tattagcatc attgatgagc aggatgcccg ggccattcac
     1561 tacgaatagt tggtaaatgt tttgctggct ttgcaccgac tgcaggcgaa aatgcccgtt
     1621 gctgtcgatg ctggcagagt ccaccacaat gcggttgggc gaggcgtagg gcaactcggc
     1681 cagcatcacc tgttttcctt tggcgtgtaa aatggttcct tctaccacca ggttttgttg
     1741 agcctggtcg ccgcaggcgg ccagtcccag tgaaagagtc aaccaaccta atgtattgat
     1801 gcagctgtgg cgtttcatga tcatggtttt atcagcttct cagtttttct tccagcaatt
     1861 tggtagtggc ctgtggatcg gctttgcctt tggagtgttt tttcacttcg cccacaaaca
     1921 acccaatgag cccttttttc cctttctggt attccttcac cttgtcgggc atgctggcaa
     1981 gtacggcgtc tacccatgct tccagttcgc cactgtccga tgcctggatg atgcccaatg
     2041 actgggccag cgctgccacc gctgcattcg gttctttaat gagggcgggc agcaagcggg
     2101 tagcggccat gctgaagttg accttgccgc tttgtacaat gtcaattacc gccgccattt
     2161 ggccgggacc aaccgggaac tgttccattt cggcctgctg ctcgttgagc cagcttttta
     2221 ccgggccgat cat
//
LOCUS       DATIQF010000687         1942 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_254141,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000687 DATIQF010000000
VERSION     DATIQF010000687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1942
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254141"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..634
                     /locus_tag="VLL95_11670"
     CDS             <1..634
                     /locus_tag="VLL95_11670"
                     /inference="COORDINATES: protein motif:HMM:NF024834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HSR39565.1"
                     /translation="NDTSEASAVLPHFDDVLAYLYSLRPPKYPKPVNESLAAQGENIF
                     NANCSKCHGTYGKNGQYPNLLIPSHIIKTDSALAVSNFSDPEYIKWFEQSWFRMGNRK
                     ANLVPFKGYIAPPLDGVWITAPYLHNASVPDMETLLNSKLRPTYWERSFKKPAYDYNK
                     LGWQWEAQSHARSKSVYNTTLKGYGNSGHTYGDKLTETERSALIEYLKTL"
     gene            661..1149
                     /locus_tag="VLL95_11675"
     CDS             661..1149
                     /locus_tag="VLL95_11675"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSR39566.1"
                     /translation="MPPSKKNTESSPGWQVVTQWLQQQGLQPFAFQQEAWQHIINGES
                     GLVNAPTGCGKTFSVFLGSIIQFINEHPTNWQTQRNNGLQLLWVTPLRALAKDLGRAM
                     TEVVEALGLPWKIGIRNGDTDNTERARQKKQMPEVLIITPESLHLLLAMKGQPAFLST
                     CA"
     gene            1155..>1942
                     /locus_tag="VLL95_11680"
     CDS             1155..>1942
                     /locus_tag="VLL95_11680"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HSR39567.1"
                     /translation="MDEWHELLGSKRGVQAELAVAYLVECKRRNDDRPQTTDHQLADF
                     AKRKVEQKNQSESLPKSERNKTAGVGLSSANGRLQLWGISATIGNLDEAREVLLNPLG
                     LNGKVVKATMRKDIAVHSIIPDEIEKYPWAGHLGIKLVEKVVPIIEQSNTTLIFINTR
                     GMAERWYQALLDVAPQLAGAIALHHGSIELELRQWVEEALHTQKLKAVVATASLDLGV
                     DFRPVDTVIQVGSPKGVARFLQRAGRAGHQPGEVSHVYFLPTHSL"
BASE COUNT          538 a          511 c          494 g          399 t
ORIGIN      
        1 aaacgatacc tcagaagctt ccgccgtact gccgcacttt gatgatgtgc tggcctacct
       61 atacagcctc cgacctccga aatatcccaa gcccgttaat gaaagcctgg cagcacaagg
      121 cgaaaacatt ttcaatgcca actgcagcaa atgccatggc acttacggca agaatggcca
      181 gtatcccaac ctgctcatac cctcgcacat catcaaaaca gattctgctt tggccgtcag
      241 caatttctcg gatccggagt acatcaaatg gttcgaacaa agctggtttc gcatgggcaa
      301 ccgaaaggcc aacctggttc cgttcaaagg ctacatcgcc ccgccactcg atggggtttg
      361 gatcacggca ccttacctgc acaatgcatc agtgcctgat atggaaacgc tcctcaacag
      421 caaactgcgg cccacctatt gggagcgcag ttttaagaag ccggcctatg attacaacaa
      481 actgggctgg caatgggaag cacaaagcca tgccaggtcg aaatcggtgt acaataccac
      541 cctcaaagga tatggcaaca gcggccacac ttatggcgac aaactgaccg aaactgaacg
      601 cagtgctttg attgaatacc tgaagacatt gtaaccgata ttgcaggtca atattctcat
      661 ttgcccccat ccaaaaaaaa tactgaatca tcgccgggat ggcaggttgt aacgcaatgg
      721 ctgcagcaac aaggtttgca gcccttcgct tttcaacagg aagcctggca acacattatc
      781 aacggtgaaa gcggtcttgt taatgcaccc accggttgtg gtaaaacctt ttctgttttc
      841 ctcggcagca tcattcagtt catcaatgaa caccccacca attggcaaac gcaacgcaac
      901 aacggattgc aactgttgtg ggtgacgcca ctgcgagccc tggccaaaga cctgggccgc
      961 gccatgaccg aagtggtaga ggcattggga ttgccctgga aaattggtat ccgcaatggc
     1021 gacacagaca atacggaacg ggcacgccag aaaaagcaga tgcccgaggt gctcatcatt
     1081 acacccgaaa gcctgcacct gctgctggcc atgaaaggac aacccgcttt tttgagcacc
     1141 tgcgcatagt ggctgtggat gagtggcacg aactgctggg cagcaaacgt ggtgtacagg
     1201 cggaactggc ggttgcctat ttggtggaat gcaaaagaag aaatgacgac cgaccacaga
     1261 ccacagacca ccaattggca gactttgcta aaagaaaggt ggagcaaaaa aatcaatcgg
     1321 aaagcttacc aaaatcagag agaaataaaa ctgccggcgt tggtctgtcg tccgccaacg
     1381 gtcgtctgca actgtggggc atctcggcaa ccattggcaa cctggatgaa gcgagagagg
     1441 tattgttaaa cccgttgggc ttgaatggga aagtggtgaa agccaccatg cgcaaagaca
     1501 ttgcggtaca cagcatcatc cccgatgaaa ttgagaagta tccatgggcc ggccatttgg
     1561 gcattaagct ggtagaaaaa gtggtgccca ttattgaaca aagcaatacc acactcatct
     1621 tcataaatac ccgtggtatg gcagagcgct ggtaccaggc tttgctggat gtggccccgc
     1681 aactggccgg tgccattgcc ctgcatcacg gcagcataga gctggaactt cggcagtggg
     1741 tggaagaagc cttgcatacc caaaaactga aagcagtggt agccaccgcc agtcttgatc
     1801 tcggtgttga tttcaggccg gtggataccg tgatacaggt aggctctccc aaaggcgtag
     1861 cccgtttttt gcaaagggcc ggccgggccg ggcaccagcc gggagaagtg agccatgtat
     1921 actttttacc tacgcattcg ct
//
LOCUS       DATIQF010000688         3987 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_86927, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000688 DATIQF010000000
VERSION     DATIQF010000688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3987
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86927"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            222..554
                     /locus_tag="VLL95_11685"
     CDS             222..554
                     /locus_tag="VLL95_11685"
                     /inference="COORDINATES: protein motif:HMM:NF039650.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsL-like putative cell division protein"
                     /protein_id="HSR39568.1"
                     /translation="MSANKENTKTTKAAWRKWLQGQWIVQYVPFMFFLAVLAVLYIGN
                     GHFADNNIRNTGKAERELKQLQYQYKTLQAELIYRSKESELEKAVAPLGLTKSAEPPI
                     KVGADTAR"
     gene            683..2782
                     /locus_tag="VLL95_11690"
     CDS             683..2782
                     /locus_tag="VLL95_11690"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HSR39569.1"
                     /translation="MEMKKEILVRTYLVFIGLVVACLFILGKVLYIQLAQGHYWKAMA
                     DSAHIRFESIPAERGTIYSEDGEVLSTSVPEFDIYIDFQADGLIEKDGLLYYQYADSL
                     AIGMAKLFKDKSAAAYKKELDAGFRSKDRFLLLKRKISFSEYELLKQLPLVKLGKNKS
                     GFIAVVRMKRLYPYRLLANRTIGIARDSNKVGLERKYDNYLGGTDGKRLVRYIAGGAG
                     VPIEGTDQDPQDGSDLITTLDVDIQEMAQQALQRMMVSNEAVRGTCIVMEVKTGKIRA
                     IANLGRQSDGNYWEDYNYALAASEPGSTWKLVTMMSVLEDRKVNLQSTVDLEGGRWNV
                     VGQTVFDSEVHGMHEATVQQAFEKSSNVGMAKLAYVHYGAQPSKYIEHISRYHMDTLT
                     GVDLPGEAKPNIYKPGTKRWGITTLPWMGFGYNLTITPMHTAMLYNAIANGGKMMKPY
                     LVNALVKDGQVIRQFEPTVLNEQVCSPDVVSMLKTCMEGVVERGTARGIKSDQYSFAG
                     KTGTALVADKGIRYTDKVYQSSFAGYFPANDPQYTIVVVIRNKPHAARFYGGSVAGPV
                     FREIADRIYATHLFKKPQPEKGKTDSLAFNLVAYRQTVQKVGAMFGWRWSDSSSAQPL
                     VALQQTVEYGKVLRGNDSLPVKMPPLQGVGLKDALTICEERGLRVSARGKGKVMAQSI
                     APGLPIQKGQTVLLELN"
     gene            2792..>3987
                     /locus_tag="VLL95_11695"
     CDS             2792..>3987
                     /locus_tag="VLL95_11695"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: protein motif:HMM:NF001126.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HSR39570.1"
                     /translation="MKTLSNILTPVKPVKVLGDANLSLAGLAIDSRQVQPGFLFAAII
                     GWQQDGHQYIDAAISKGAVAIVCSNLPAQLNESVTYVQVNNSAEALALMACEFYDHPS
                     ADVKLVGVTGTNGKTTIATLLYQLFTGLGYTCGLISTVQNVIGTTVLPSAFTTPDAIS
                     LNALIRQMADAGCTHVFMECSSHAIHQHRITGLQFDGALFSNITHDHLDYHKTFDEYI
                     RVKKAFFDHLGAGAFAISNADDKRGTVMLQNSNARRMLYALKTDADFKGKIIENNLTG
                     LIMDINGREVHFRMIGEFNAYNLLAVYGAAVSLGEDKDAVLAVLSNLTGAEGRFDYTV
                     SLNEKVIGIVDYAHTPDALLNVLATIKKLQQGNEQVITVVGCGGDRDRTKRPLMAAVA
                     CEYSHKA"
BASE COUNT         1118 a          959 c         1067 g          843 t
ORIGIN      
        1 ccccatttac ggcgccaagt cccaatcgcc ttttgtgttg atcaccaaaa agccgattga
       61 agccagcgct gaagaagtaa agcgaaacga tagaagcaga agtgcccgcc taagggtggc
      121 agaactgagg gaagtgaaag agtgaataag tgaatgagtg aatgaagaaa gagaagtgac
      181 tgaaacaaaa aaaacaaaca aaaaaccaaa aacaaaaacg cttgtcggca aacaaagaaa
      241 ataccaaaac aacaaaggct gcatggcgca agtggctgca aggccagtgg atagtgcagt
      301 atgtgccttt tatgtttttc ctggcggtgc tggcagtgtt gtatataggc aacggacatt
      361 ttgctgacaa caatatccgg aataccggca aagccgaaag agaactgaaa caactgcaat
      421 accaatacaa aacccttcaa gccgagctga tttaccgcag caaggaaagt gaactggaaa
      481 aggcggtagc gccgctgggg cttaccaaaa gtgcggaacc acccataaaa gtgggtgccg
      541 acacggcgag gtgacagtga agaaggagat tgggaaagtt ggcagcggtt cctggaaaat
      601 aaaaatgtga ttggatcggc atgatttgaa atgctgttcc taccaaacta gtaacacaaa
      661 cacccattag attacctgag gcatggagat gaagaaagaa atactggttc gcacctacct
      721 ggtgtttatc ggactggttg tcgcttgtct cttcatcctc ggcaaagtgt tgtacatcca
      781 actggcgcaa ggccattact ggaaggccat ggccgacagt gcgcacatcc gtttcgaatc
      841 cattccggcc gaaagaggta ccatttacag tgaggatggt gaagtgttga gcacttcggt
      901 acccgagttc gacatctata tcgatttcca ggctgatggc ttgattgaaa aagacggctt
      961 gctctattac caatatgccg attcactggc cattggcatg gccaaattgt tcaaagacaa
     1021 atcagccgcg gcttataaaa aagaactgga tgcaggattc aggagcaaag accgtttcct
     1081 gctgctgaag cgtaagattt ctttcagtga atatgaattg ctgaaacaac tgcctttggt
     1141 aaagctgggc aaaaacaaaa gcggtttcat tgcggtggtg cgtatgaagc gtttgtatcc
     1201 gtatcgcctg ttggccaacc gcaccattgg catagcccgc gacagcaaca aagtaggcct
     1261 cgaaagaaaa tatgacaact acctgggtgg caccgatggc aagagactgg ttcgttacat
     1321 cgccggtggc gccggtgtgc ccattgaagg taccgaccag gatccacagg acggcagcga
     1381 cctgatcacc acgctggatg ttgacatcca ggaaatggca cagcaggcac tgcagcgcat
     1441 gatggtatcc aacgaagcag tgcgtggtac ctgcatcgtg atggaagtga aaaccggcaa
     1501 gatcagggcc atcgccaacc tgggtcgtca gtcagacggc aattactggg aagattacaa
     1561 ttatgccctg gcagccagtg agcccggttc tacctggaag cttgttacca tgatgagcgt
     1621 actggaagac aggaaggtga atttgcaaag cactgtagac ctggaaggag gacgctggaa
     1681 tgtggtaggc caaacggtat tcgacagcga agtgcatggc atgcacgaag ccactgtaca
     1741 gcaagcattc gaaaagagca gcaacgtagg catggccaaa ctggcttatg tgcactacgg
     1801 cgcacagccc tccaagtaca tcgagcacat cagccgctat cacatggata ccctcacggg
     1861 tgttgatttg cccggtgagg cgaagcccaa tatttacaaa cccggcacca agcgttgggg
     1921 tatcaccacc ttgccatgga tgggttttgg atacaacctt accatcacgc ccatgcatac
     1981 agccatgctg tacaatgcca tcgccaatgg cggaaaaatg atgaagccct acctggtgaa
     2041 tgcattggtg aaagacggcc aggtgatcag gcagtttgaa cccaccgtgt tgaacgagca
     2101 ggtttgcagc cccgatgtgg tcagcatgtt gaagacctgc atggaaggcg tggtggaaag
     2161 aggcactgcc cgtggcatca aatctgatca atactccttt gcgggaaaaa caggaacggc
     2221 cctggtagca gacaaaggca ttcgctatac cgataaagta taccaatcct cttttgccgg
     2281 ttatttcccc gccaatgatc cgcaatacac catcgtggta gttatccgca acaagccgca
     2341 tgctgccagg ttttatggcg gatcggtggc cgggcccgtg ttcagggaga tagctgacag
     2401 gatctatgcc acccatcttt tcaaaaagcc ccaaccggag aaaggcaaga ccgatagcct
     2461 ggcattcaac ctggtggctt accgccaaac agtgcaaaag gtaggagcca tgtttggctg
     2521 gcgttggtcc gacagcagtt cggcacaacc actggtggca ctacagcaaa ctgtagagta
     2581 cggcaaggtg ttgcggggca atgattcgct gccggtgaag atgccaccct tgcaaggggt
     2641 gggcttgaaa gatgcgctga ccatttgcga agaacgtggt ctccgcgtaa gcgccagggg
     2701 aaaaggaaaa gtgatggcac aatccattgc accgggcctg cccatccaaa aaggacaaac
     2761 agtattactc gaattgaatt gacaaaaaga agtgaagacg ctatcaaaca tattaacccc
     2821 tgttaagcca gtcaaagtgt tgggcgatgc caatctcagc ctcgcaggcc ttgccatcga
     2881 ttcaaggcag gtgcaacccg gctttttgtt tgcggccatt ataggctggc agcaagacgg
     2941 ccatcaatac attgacgcgg ccatcagcaa gggtgctgtt gccattgtgt gcagcaacct
     3001 gccggcacag ctgaatgaga gcgttactta tgtacaagtg aacaatagcg cagaagcact
     3061 ggccttaatg gcctgcgagt tctacgatca tccttctgct gacgtgaagt tggtaggtgt
     3121 aacgggtacc aatggcaaaa ccaccatcgc cacattgttg taccagttgt ttacaggttt
     3181 gggctacacc tgcgggctta tttccactgt gcaaaatgtg attggcacta ccgtattgcc
     3241 ttctgccttt actacgccgg atgctatcag cctgaatgct ttgatcaggc agatggcgga
     3301 tgcaggttgc acccacgtat tcatggagtg cagcagccat gccattcacc agcatcgcat
     3361 taccggcctt cagtttgatg gtgccttgtt cagcaacatc acgcatgacc atctcgatta
     3421 tcacaaaaca tttgatgaat acatccgtgt aaagaaagcc ttcttcgacc acctcggcgc
     3481 tggcgccttt gccatcagca atgcagatga caagcggggc acagtgatgc tgcaaaactc
     3541 caatgccagg cgtatgctgt atgccttaaa aacggatgcc gacttcaagg gcaagatcat
     3601 cgagaacaac ctcaccggtt tgatcatgga catcaatggt cgcgaagtgc atttcaggat
     3661 gatcggcgaa ttcaatgcct ataacctgct ggcggtgtat ggcgcggctg taagcctggg
     3721 cgaagacaag gatgccgtgc tggcggtgct gagcaacctg accggtgcgg aaggtcgctt
     3781 tgattatacc gtatcgctaa atgaaaaagt aatcggtatt gtagactatg cacacacacc
     3841 cgatgccttg ctgaacgtgc tggccaccat caaaaaactg cagcagggaa atgagcaggt
     3901 gatcaccgtg gtaggctgcg gtggcgacag ggatagaacc aaacgtccgc tgatggctgc
     3961 tgttgcctgc gaatacagcc acaaggc
//
LOCUS       DATIQF010000689         3392 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_41227, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000689 DATIQF010000000
VERSION     DATIQF010000689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3392
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41227"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..759)
                     /locus_tag="VLL95_11700"
     CDS             complement(<1..759)
                     /locus_tag="VLL95_11700"
                     /inference="COORDINATES: protein motif:HMM:NF012991.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39571.1"
                     /translation="MSTQTASNVSLAKEAWKQRPLIISGPCSAETEEQLIGTAQRLAN
                     TGKVHVLRAGIWKPRTRPGSFEGVGTKGLPWLQQARKITGLPTAVEVATAKQVEDALH
                     FDVDILWIGARTTVNPFSVQEIADALRGVDVPVLIKNPINPDLELWTGAVERVAKAGI
                     SQIGLIHRGFSNYGNTEYRNAPMWHLAIEMKRRNPEMMLVNDPSHICGRRDILIDVAQ
                     KAIDLDFDGLMVESHVDPDNAWSDAKKQITPEVFA"
     gene            complement(794..2392)
                     /locus_tag="VLL95_11705"
     CDS             complement(794..2392)
                     /locus_tag="VLL95_11705"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSR39572.1"
                     /translation="MLGGVAKLGFTTPTEIQLKSIPLLLQGTRDFVGLAQTGTGKTAA
                     FGLPLLQLIDRGQKHPQALVVCPTRELCVQIVKELDSFGKTGGSSKVLAVYGGASIVQ
                     QIRDLRHGVQIVVATPGRLIDLIERKAIGLSKIHYVVLDEADEMLNMGFKEDIETILE
                     YTPTRNSMWLFSATMPPEIRQVAKRFMNQPVEVSVGKVNTANVNIDHQYFVTTQQYRY
                     ETLKRLIDFNPDIYGIIFTRTKLDAQEISDRLTREGYNVDSLHGDLSQQQRDRVMNGF
                     RSKALQLVIATDVAARGIDVSGITHVINFELPDETEVYTHRSGRTGRAGKTGICISIV
                     TPRDVRRIRDIEHIIKAKMHRLEIPSGTDVCRKQFFHFMERLLAADISHGNYETYLPM
                     LQEKFAAVTKEEVLQRVAALEFDRFLKYYENAEDLNIKKMPERRDDRKAGERRDTQGR
                     SFAGGANYQRLFVNLGTKDGFYKASFLQYLLDLSDLRKDVVGKIDLKNMNSFIEVDKK
                     HASKMIKAIDGKTYKGRKIRMNEA"
     gene            complement(2475..3326)
                     /locus_tag="VLL95_11710"
                     /pseudo
     CDS             complement(2475..3326)
                     /locus_tag="VLL95_11710"
                     /inference="COORDINATES: protein motif:HMM:NF006307.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004665 - prephenate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0008977 - prephenate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0006571 - tyrosine biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
BASE COUNT          782 a          893 c          752 g          965 t
ORIGIN      
        1 agcaaaaacc tccggtgtaa tttgtttttt ggcatcgctc caggcgttgt ccggatctac
       61 atggctctct accatgaggc catcaaaatc gaggtcaatg gctttttgtg ccacatctat
      121 cagaatatcc ctgcggccac aaatatgtga aggatcattc accaacatca tttcgggatt
      181 gcgacgcttc atttcaatgg caaggtgcca catgggagca ttacggtatt cagtattccc
      241 ataattgctg aaaccgcgat ggatcaaacc aatttgcgaa atgccagcct tcgccaccct
      301 ttccaccgct cccgtccaca attccaaatc gggattgatt ggattcttga tcagaacagg
      361 tacatcgacg ccacgcaaag catcagctat ttcctgaacg ctgaaaggat ttaccgtggt
      421 acgggctcct atccaaagaa tatctacatc gaaatgcaaa gcgtcttcca cctgcttggc
      481 ggtagccact tccaccgcgg tgggcaggcc tgtgattttc ctggcttgtt gcaaccaagg
      541 caaacctttc gttcccacgc cttcaaaact tccgggacgg gtacggggtt tccaaatacc
      601 ggcacgaagc acatgtactt ttccagtgtt ggccaggcgt tgtgctgtac caattagttg
      661 ttcttcagtt tcagcactgc aaggaccact gatgatcagc ggacgctgct tccaggcttc
      721 ctttgcaagg ctcacattgc ttgctgtttg tgtactcatt gctatgttga tttttagagg
      781 ggttacaaat ctcttatgcc tcgttcatcc tgatctttct gcctttgtag gttttgccat
      841 caatggcctt gatcattttg gaagcatgct ttttgtctac ttctatgaaa ctgttcatgt
      901 tcttcaaatc aatttttccg acaacatcct ttctcagatc actcaggtcg agcaggtatt
      961 gcaggaagct ggctttatag aaaccatcct tggtacccag gttgacaaac aaacgctggt
     1021 agttggcgcc gccggcaaaa ctgcggccct gcgtatcgcg acgttctcca gcctttcggt
     1081 catccctgcg ttccggcatt ttcttgatgt tcaggtcttc cgcattttca tagtatttca
     1141 ggaacctgtc aaattcaaga gcggccaccc gctggagtac ttcttccttg gtgactgcag
     1201 caaatttttc ctgcagcatg ggcaagtagg tttcgtaatt gccatgactg atatcggctg
     1261 ccagcaaccg ctccatgaaa tgaaagaatt gcttgcggca tacatcggta cctgatggaa
     1321 tttccaaccg gtgcatcttg gctttgatga tatgctcaat gtcacggatg cgtcttacat
     1381 cccttggggt aactatggag atgcaaatac ccgttttgcc agcccggccc gtacggccac
     1441 tgcgatgggt atacacttcg gtttcatcgg gcagttcaaa attgatcaca tgcgtaatgc
     1501 ccgacacatc aatgccacgg gctgccacat cggtggcaat caccaattgc aaagccttgc
     1561 tacggaaacc attcatcaca cggtcgcgtt gctgctggct caggtcgcca tgcagcgaat
     1621 caacattgta tccttccctg gtcagcctgt ccgaaatttc ctgggcatcc agtttggtac
     1681 gggtgaaaat gataccatag atgtccggat tgaaatcgat cagtcgcttg agcgtttcat
     1741 aacgatactg ctgcgtggtg acgaaatact ggtgatcgat gttgacgttg gcggtgttca
     1801 ccttgcccac actcacttca accggctggt tcatgaatcg cttggctacc tgccgtattt
     1861 cgggtggcat ggtggcactg aagagccaca tgctgttgcg ggtcggcgta tattccaaaa
     1921 tcgtttcaat gtcttccttg aaacccatgt tcagcatttc atctgcctca tccaacacca
     1981 cataatggat cttgctgaga ccgatggcct ttctttctat caggtcaatc aagcggccag
     2041 gagtagccac tacaatttgt acgccatggc gcaggtcacg tatttgctgt acaatggatg
     2101 cgccaccata cacagccagt actttggagc tgcctcctgt ttttccaaaa ctgtccaatt
     2161 cttttacgat ttgaacacag agttccctgg tgggacacac taccaatgcc tgcggatgtt
     2221 tctgtccgcg gtcaatcaat tgcaacagcg gcaatccaaa cgctgctgtt tttccggtgc
     2281 cagtttgtgc caggccaaca aagtcgcggg taccctgcag cagcagtggt atcgacttca
     2341 gttgtatttc ggtgggcgtt gtaaaaccca atttcgctac ccctcccagc aactattcac
     2401 tgagtaccag actgttaaaa tcactcatta cattttcctt ttcgcattca gcctatgaat
     2461 gcattgttta ttgtttattt aaaaattcgt ttaatgttgt tggcctgccc aatcaattca
     2521 cgcaaataat cccagttttc tttttcaagg caggctttga acttccgtaa ctgcgatatg
     2581 tgttcattca atacatcgag cacattgtcc ctgttttgcc tgaaaatggg cacccacatg
     2641 tcggggttgc ttttggcaag acgcacggta ctttcaaaac cggcactggc caattcaaat
     2701 attgcctgtt cctctctctc cttttccaaa acggtattgg ccagcgcaaa agaagtgatg
     2761 tgtgaaatat ggctgatgta cgctgtgtgc acatcatgat cggcagcgtc catgtacaca
     2821 aggtgcatac ccatttgttg gagcaattgt tgcgccgttt gcagcgcatc tttatcggat
     2881 tgctctgcat tgcatatgat agcagccttg cctgcatagg cataaacagt ggcagctgcc
     2941 gggccactga actcggtacc ccacatgggg tgcgcagcta caaaccgacc acgatttgga
     3001 tggtctttca ccgcttcaat gatctggtac ttggtagagc ccatatccaa caccacctgg
     3061 ttgcttacga tatcgagtac agggatcagt actttgatgg tactgtcaac cggcaccgag
     3121 atcacaacca catcactatt cttcactgcc tcttccagcg gaagtatttc atctaccaca
     3181 cccagctgca atgcttgctg gcagtgggtt tcgttgttgt ccacaccaat aatatggctg
     3241 gccactccct tgctgcgaag taccaatgcg acactgccgc caatcaatcc tatgccaatg
     3301 accgtgatcc tcatatcacc gattgaattc tgtttatagc ttcttcaatt ttgttttcgg
     3361 ggctgcacag actgatgcgt acatacccat tg
//
LOCUS       DATIQF010000690         4085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_56662, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000690 DATIQF010000000
VERSION     DATIQF010000690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4085
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56662"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..434
                     /locus_tag="VLL95_11715"
     CDS             <1..434
                     /locus_tag="VLL95_11715"
                     /inference="COORDINATES: protein motif:HMM:NF003819.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HSR39573.1"
                     /translation="VTRKEITNRFDFKGSHVVIDLDKKTFTLNMEADSDMKMEQIIDV
                     LISRSMKQGLDGQAFDLSKEGAQSGKVWKKTVPVRNGLKQEDAKKIVKMIKDSGLKVQ
                     AAIMDDIIRVTGKKIDDLQDVIAKCRQSDFGIPLQYINMKS"
     gene            596..844
                     /locus_tag="VLL95_11720"
     CDS             596..844
                     /locus_tag="VLL95_11720"
                     /inference="COORDINATES: protein motif:HMM:TIGR00105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HSR39574.1"
                     /translation="MKKDIHPKSYRLVVFKDMSNGHSFLSRSTAPTKETIAWEDGNEY
                     PLIKLEISNTSHPFYTGKNVLVDTTGRIDKFKKKYAKK"
     gene            961..2106
                     /locus_tag="VLL95_11725"
     CDS             961..2106
                     /locus_tag="VLL95_11725"
                     /inference="COORDINATES: protein motif:HMM:TIGR03991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative sugar nucleotidyl transferase"
                     /protein_id="HSR39575.1"
                     /translation="MVIVLYDTPLSRRSLHPLSLTRPVGELRLGILTLREWWHRKTGY
                     EVVCVSEPFLSDPMPGGESFVCVDACIYPNQDLIDAVANMKSSEMLEDSEGLIAFATS
                     KPPIFGQIPAWSGHTHTVSTQTRLLHPLHLIENNARALKEHFELLGPSFSNSIDRTNT
                     VIGDQLVVEQGATVIGCIINTTEGPVHIGKHALVMEGTTIRGPVSIGEGAVVKMGTRI
                     YPGTSIGPYCTVGGEIKNSIMHSYSNKAHDGYLGDSYIGAWCNLGAGTSCSNVKNTAS
                     SIKVWNGANDQWKDAGLKCGTIMGDYSRTAINTSLNSGTTIGVCSSIHSVIQPDKYVP
                     SFSWGPGEKYELAKALEHISNWKSLKGQSLSGKETDIITVVHNHQSD"
     gene            2190..2954
                     /gene="tpiA"
                     /locus_tag="VLL95_11730"
     CDS             2190..2954
                     /gene="tpiA"
                     /locus_tag="VLL95_11730"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF012349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HSR39576.1"
                     /translation="MRKFYAAANWKMNCTKDQAKTLAEDLLAISHTLDKRHRVVLAVP
                     FPYLILVHDIVHSNEFFSVAAQNMHHETFGAYTGEVSAPMLKSIGVEFVILGHSERRE
                     HFGEDNALIKKKIDMALEYGLKPIFCCGEPLNVREEGKQNEYVMQQLEESLFHLSPDQ
                     MKKIVIAYEPIWAIGTGKTASVDQAQEMHFMIRSRLIKVYDENVANSVSILYGGSVKA
                     DNAEALFNCPSVDGGLVGGASLIAADFEKIIESLKR"
     gene            2955..3419
                     /locus_tag="VLL95_11735"
     CDS             2955..3419
                     /locus_tag="VLL95_11735"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043169 - cation binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HSR39577.1"
                     /translation="MKRNPAIQPLSRQHHILLLAVLLLKKGITKNASLSVMVSFLNEV
                     WYDVLQLHLQQEEDALIPLFPKAELEAENQTILAEHIALEQLHQKLNSPKATQEHLEE
                     FVAMLEKHIRYEEHQYFPKIESLANSTTFQQLADKITEVPSSCLQFSPRFWE"
     gene            complement(3434..>4085)
                     /locus_tag="VLL95_11740"
     CDS             complement(3434..>4085)
                     /locus_tag="VLL95_11740"
                     /inference="COORDINATES: protein motif:HMM:NF015446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Sua5 family C-terminal domain-containing
                     protein"
                     /protein_id="HSR39578.1"
                     /translation="PGHPLTHQLLSMLDFPLAAPSANRFGYVSPVTAGHVKEGLDGRI
                     PYIIDGGACEVGLESTIVDFENGSVIIRRTGKISAGMIESVLGKAVKLQTAAADHPVA
                     PGMLKSHYTTTTPLYQGNLAALNNRFRQQNRLLLGWGTENEILESAGELVKGGLVSVA
                     SLSAGKDLDEVAKNLFAAMRLADRSGFEVILVPVFPDHGIGLAINDRLQRAQHHHK"
BASE COUNT         1157 a          958 c          950 g         1020 t
ORIGIN      
        1 atgtgaccag gaaagagatc accaaccggt tcgattttaa agggagtcat gtggtcattg
       61 acctggataa aaagaccttc accctgaaca tggaagccga cagcgacatg aagatggaac
      121 agatcattga tgtactcatc agccgatcta tgaagcaggg gctggatggc caggccttcg
      181 acttgtcgaa agaaggggcc caaagcggaa aggtttggaa aaaaacggtt cctgttcgga
      241 atggcctgaa acaggaagat gccaagaaaa tcgtgaaaat gataaaggac agcggcctaa
      301 aagtacaggc ggccatcatg gatgacatca ttagggtaac aggaaagaag atcgatgatt
      361 tacaggacgt tattgccaaa tgccggcagt ctgattttgg tattcctctg cagtacatca
      421 acatgaaaag ctgatatttc cgcccggttc accctttttt aggcgggaaa cctcctttta
      481 tagggctatt ttctgatttt tttagcctga aaacatacca attagcggtc aaacccctac
      541 ttttgccgac ctaaataaac agcccggtcg cagtcgggca aaaaaacaga aagcaatgaa
      601 aaaagatatc catcctaaga gttatcgcct ggttgtgttc aaggacatga gtaacggtca
      661 cagcttcctg agccgctcaa ctgctccaac caaagaaacc atcgcctggg aagacggcaa
      721 tgaatacccg ctgatcaagc tggaaatttc aaacaccagc cacccattct atactggtaa
      781 aaatgtgttg gttgacacta ccggtcgtat cgacaaattc aagaagaagt acgctaagaa
      841 gtaatttcct ggctacgtat agcaagaaag tattgacaaa agagcttccc aaccgggagg
      901 cttttttgtt tgatgccaaa cgtccaattc cagttaactt gccgctttca ttaggttgcc
      961 atggtcattg ttttgtacga tacccccctt tctcgcagaa gtctccatcc gctgtcgctc
     1021 acaaggcctg tgggagaact tcgtctcggg attcttacat tgagagaatg gtggcacagg
     1081 aaaaccggtt acgaggtggt ttgtgtctca gagcctttcc tttcggatcc aatgccaggt
     1141 ggtgaatcgt tcgtttgtgt agatgcatgt atctatccaa atcaggattt aatagatgcc
     1201 gttgcaaaca tgaaaagcag tgaaatgctg gaggacagtg agggcctgat agcatttgcc
     1261 acttcaaagc cacccatttt tggccagatc ccagcgtggt cggggcatac ccatactgtg
     1321 tcgacccaga cacgtttgct gcatcccctg catctcattg aaaacaatgc ccgtgcttta
     1381 aaagaacatt ttgagttgtt ggggccatct ttttcaaact ccattgacag gaccaacacc
     1441 gtgattggcg accagttggt ggtagaacaa ggcgctacag taattggctg catcatcaat
     1501 acaaccgaag gaccggtaca tatcggaaag catgcgctgg taatggaagg cactaccatt
     1561 cgtgggcctg tgagcatagg ggagggcgct gttgtaaaaa tggggacaag gatttaccct
     1621 ggcaccagta tcggcccgta ttgcacggtg ggcggcgaga tcaaaaacag cattatgcac
     1681 agctactcca acaaagcgca tgacggatac ctgggtgaca gttatattgg cgcctggtgc
     1741 aacctgggcg caggcaccag ttgcagcaat gtaaaaaaca cggcttcctc cataaaagtg
     1801 tggaatgggg ccaacgacca gtggaaggat gccggcctga aatgtggtac catcatgggc
     1861 gattacagcc gcaccgccat taataccagt ttgaacagtg gcaccactat tggtgtatgc
     1921 tccagtattc attccgtaat acaacccgat aaatatgtgc cctctttcag ttggggacct
     1981 ggagagaaat acgagctggc aaaagccctt gaacacatca gtaactggaa atcactgaag
     2041 ggacaaagcc tgtctggaaa agaaacagat attataacag ttgttcacaa tcatcaatct
     2101 gattgataaa agtcagtctt tgagtatgta tttcgcctgt attttcaacc ccgaaaaatc
     2161 aatccttcta aaaacataat aaactatcca tgagaaagtt ctatgcagca gccaactgga
     2221 aaatgaattg caccaaagac caggcaaaga ctttggctga agatttactt gctatttccc
     2281 atacacttga caagcgtcat cgtgttgtac tggccgttcc ttttccgtac ctcattttgg
     2341 tgcacgacat tgtgcattcc aatgagttct tttcggtagc agcacaaaac atgcaccacg
     2401 agacatttgg cgcttacact ggtgaggttt ctgctcccat gctcaagtct attggcgtag
     2461 agtttgtgat tctcggacac agtgaacgcc gcgaacattt tggcgaggac aatgccctga
     2521 tcaaaaagaa aattgacatg gcattggaat atggtttaaa acccattttc tgctgcggtg
     2581 agcctctgaa cgtgagagag gaaggcaagc aaaatgaata tgtaatgcag caattggaag
     2641 aaagcctctt ccacctctcg cctgaccaaa tgaaaaaaat tgtgattgcc tatgaaccca
     2701 tctgggctat tggtactggc aaaaccgcat cagttgacca ggcacaagaa atgcatttca
     2761 tgatccgcag ccgcctcatt aaagtttacg atgaaaatgt tgccaattca gtatccattc
     2821 tctatggcgg cagtgtaaaa gccgataatg cagaagccct tttcaattgt ccttcagtgg
     2881 atggcggatt ggttggcggt gccagcctga ttgctgccga ctttgaaaag atcattgaga
     2941 gcctgaagcg ataagtgaag cgcaacccgg ctatacaacc attgagccgc cagcatcata
     3001 ttttgttgct ggcggttttg cttttgaaaa aagggatcac caaaaatgca tccctttcag
     3061 tgatggtcag cttcctgaat gaggtttggt atgatgtttt gcagctgcat ttgcagcagg
     3121 aagaagatgc gctgatacct ttatttccca aggcagaatt agaagcggaa aaccaaacca
     3181 tcctcgccga acacatagct ttggagcagt tgcatcaaaa gctgaatagt ccaaaagcaa
     3241 cacaggaaca tttagaggaa tttgtagcga tgctggaaaa acacattcgg tacgaagagc
     3301 accagtattt tccgaagatc gagtctctcg ccaactcaac cacctttcaa caactcgctg
     3361 ataagatcac ggaagtgccc agtagttgtc tccaattttc tccaaggttc tgggaatagg
     3421 actcaacaaa ggattatttg tgatgatgtt gcgccctttg aagcctgtca tttattgcca
     3481 gccctatacc atgatccggg aaaacaggta ccaggataac ttcaaatcca gacctgtcgg
     3541 ctaaccgcat ggcagcaaac aaattcttgg ccacttcatc caggtctttc ccggctgaca
     3601 aacttgctac agataccaac ccgcctttta caagttctcc ggcactctcc aatatttcgt
     3661 tttccgttcc ccaaccaagc agcaatctgt tttgctgccg aaacctattg ttcaatgctg
     3721 ccaggttgcc ttgatatagg ggagtggtgg ttgtataatg gcttttcagc atgcccggtg
     3781 ccaccgggtg gtcagcggct gccgtttgca gttttactgc tttccccaaa acggattcaa
     3841 tcatcccggc actaatctta ccggttctcc tgatgatgac tgaaccattt tcaaaatcca
     3901 cgattgtgct ttctaaccct acttcacaag caccgccgtc aattatgtag ggtatccgtc
     3961 catccagccc ctcctttacg tgaccggctg ttaccgggct cacatacccg aatcggttgg
     4021 cactgggagc tgccaacgga aaatcaagca tagagagcaa ttgatgggta agtggatgcc
     4081 cgggt
//
LOCUS       DATIQF010000691         3509 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_254178,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000691 DATIQF010000000
VERSION     DATIQF010000691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3509
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254178"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..965
                     /locus_tag="VLL95_11745"
     CDS             <1..965
                     /locus_tag="VLL95_11745"
                     /inference="COORDINATES: protein motif:HMM:NF024974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="gliding motility-associated C-terminal
                     domain-containing protein"
                     /protein_id="HSR39579.1"
                     /translation="NHPTLTGYSYRWVSDTLGTGPTLATSFVLGNIGKGKYYFYLKDS
                     KGCEQLGTVRNINGFDKPVINTANVKVADETCSSMGSISGISILQTPSIPYSLVWQDA
                     SNNVIGNSLNISGIPKGTYLLTLTDSFQCKVSATFTIQKTTPLLQLPSYSNVSVKRGG
                     NAKIIPSNIQSPGTYNLFAANNSTVPSQKNNTGSFEIKQVQRDSTVYVSYENQGCQSE
                     KVAINIKVYDEVMVTPPNAFSPNGDGINDVWLIRSQGVQQLERLQIFDRYGKIVFETI
                     VPQNGWNGTSNGGVVPAGTYYYLLDYKAESGGKFQQKGSVLVIK"
     gene            complement(1043..1249)
                     /locus_tag="VLL95_11750"
     CDS             complement(1043..1249)
                     /locus_tag="VLL95_11750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39580.1"
                     /translation="MDKSKMITAYCLKTKEKNVPMQDAVVTKTARGGYMASGHDGKGN
                     KMTALLSEARALQAIQDGVAKKDF"
     gene            1456..2937
                     /locus_tag="VLL95_11755"
     CDS             1456..2937
                     /locus_tag="VLL95_11755"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR39581.1"
                     /translation="MRCLLLLLLPLLQGLSALSQTDTIALAQQLAWKKEFKAANDLLA
                     IYNSHHADVNGIRLQAQVLHWMGQSKEAISLLQPAVDQFPEYTAVRLDYARVLFESGR
                     INQAKAQYALYLPTDSTNPEALLNTAYINRWNGNTSKAASAIQSFLQLYPTNQGARDL
                     QLAMKQDQTPWIKPGFSYLSDDQPLQVPSLSLEAGWYKSWALAPTLAARWNSMQSSTN
                     NSSVQVLLANQFYIGATGTTLQLGGGLISQEGETKPLAQLGLKQKLASHFWLDLGWEK
                     RAYQHTVISTQNLQMQQFTYAALRYNKDDKWMAQAQYENQRFEDGNNVKTIYAWFMVP
                     VLQLPKWRLSTGYSIVYADADTNTFRPKKSLSEIVATGPPIAGIYDPYFTPTNQLTHS
                     LLAASTLSLSNAVVWELRASGTFAGKADNPYFYLTQNGNQYQLSRSFYQQSYHPFELY
                     TAINWTTAQQSKLSIYYQFSSLLFYIRHIAGVTFKIPLRHGGK"
     gene            2924..>3509
                     /locus_tag="VLL95_11760"
     CDS             2924..>3509
                     /locus_tag="VLL95_11760"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR39582.1"
                     /translation="MAANDFDNLWQYKKAPRPDRFQRTILLGLVAAGVVAILNLADWW
                     FREEHVANWVLFLLLTFMFWWGILRLMVVWKTWLRIRVPETPAAITGKTVAIFTTSSP
                     GEPLSMFKKTLEACRNIRYPHTTYLLDDTGDPAFREVAEQYGAVWLELKGLPGAKAGK
                     INAALQQTDEEFILVLDPDHIPFPNFLDEVLGFFE"
BASE COUNT          949 a          903 c          790 g          867 t
ORIGIN      
        1 ccaatcatcc caccttgacc ggatattcat acagatgggt atctgataca ctaggtactg
       61 gtccaactct tgccacatca tttgtactcg gcaacattgg caaaggcaaa tactatttct
      121 atctaaaaga cagcaaaggc tgcgagcaat tgggcacagt aagaaatatc aatgggtttg
      181 acaagcctgt tatcaatacg gccaatgtaa aggtggctga tgaaacctgt tcttccatgg
      241 gaagtatcag tggcattagc attttgcaaa ctccttccat cccctattcc cttgtttggc
      301 aggatgcttc taataatgtt attggcaaca gtttgaatat ctccggcata ccaaaaggga
      361 cctacctatt aactctcaca gacagttttc aatgcaaggt atccgccact tttacaattc
      421 aaaaaacaac acctcttctc cagttgcctt cttattcaaa tgtttctgtg aagagaggtg
      481 gaaatgccaa gattatacca agcaacattc aatctcctgg tacctacaac ctttttgccg
      541 ccaacaacag cacagttcct tcgcaaaaga ataataccgg ttcttttgaa ataaagcagg
      601 ttcaacggga tagcacagtt tatgtgagct acgaaaacca gggctgccaa tcggaaaaag
      661 tagccatcaa tatcaaagtt tatgatgaag tgatggtaac ccctcccaat gcgtttagtc
      721 ctaatggaga tgggataaat gatgtatggc taatccgctc gcaaggagta caacaactgg
      781 agcggcttca gattttcgac cgatatggca aaattgtttt cgaaaccatt gtaccccaga
      841 atggttggaa tggcacctca aatggaggag ttgtaccagc cggcacttat tactatttgc
      901 tggattacaa agcagaatcc ggtgggaaat ttcagcaaaa gggaagtgtg ttggtaatca
      961 aataggataa acgacagaag gctgctcaag aaagcagcct tctgtttaaa aggcaaagca
     1021 atgattaagt agactgctat tctcagaagt ccttcttagc tacgccatcc tggatggcct
     1081 gcaaagcacg ggcttcgctc agtaaggcag tcatcttatt gcctttgcca tcgtggcctg
     1141 aagccatgta gccacctctt gcagttttgg taaccaccgc atcctgcatg ggcacattct
     1201 tttctttggt tttgaggcaa taggccgtga tcattttgga cttgtccata gtcaataatt
     1261 tttgggtaga taatagttat aaaggaaacc cattatcggc aacaatcaaa aaaccgctgc
     1321 caaatggtgt ataagttgtg ggagacgcat tcacccgctg cgaacccata tgcaattgat
     1381 tgcccttttc aatcggcagc aagacagcga ttttctggct aaatttgaac ccggcactta
     1441 ttaaccccac ttatcatgcg ttgcctactg ctgcttttgc taccgctttt gcagggcctg
     1501 tcagcccttt cacaaactga cacgattgcc ctggcgcagc aattggcctg gaaaaaagaa
     1561 tttaaggctg ccaacgatct cctggctatt tacaacagtc atcatgctga cgtcaacggc
     1621 ataaggctgc aggcacaggt gctccattgg atggggcaaa gcaaggaagc tatatcgctg
     1681 ctgcaacccg ccgtggatca atttccggaa tacacggcgg tgcgcctcga ttatgcaaga
     1741 gtgcttttcg aatctggccg catcaaccag gccaaagcac aatatgcact atacctgcca
     1801 accgacagta ccaacccgga ggccctgctc aacaccgcct atataaacag gtggaacggc
     1861 aatacaagca aagctgcttc cgccatccag tcattcttgc aattataccc caccaaccag
     1921 ggcgccaggg atttacagtt ggccatgaaa caggaccaaa cgccctggat aaagcccggt
     1981 ttcagttatt tatccgacga ccagccactg caagtgccct ccttatcact ggaagctggc
     2041 tggtacaaaa gttgggcgct ggctcccaca ttggcagccc ggtggaactc catgcaaagc
     2101 agcaccaaca acagttcggt acaagtactg ctggccaacc aattctatat tggcgccacc
     2161 ggcactacgc tgcagttggg cggtggcctg atcagccagg agggcgaaac caaaccattg
     2221 gcgcagctgg gattgaagca aaagctggcc tcgcacttct ggctggatct gggctgggaa
     2281 aaaagagctt accagcacac cgtcatcagt acacaaaatt tgcagatgca gcagtttacc
     2341 tacgcagccc ttcggtacaa taaagacgac aaatggatgg cacaggccca atacgaaaac
     2401 caacgatttg aggatggcaa taatgtgaaa accatttatg cctggtttat ggtacccgtg
     2461 ctgcaattac ccaaatggcg cctgagtacc gggtattcca tcgtatacgc cgacgccgat
     2521 accaatacct tccgtcccaa aaaatcactg tccgagattg tggctacagg gccacccatt
     2581 gccggcattt acgatcctta ttttacccct accaaccagc tgacccactc gttactcgcc
     2641 gccagcacat tgtcattgtc caatgctgtg gtttgggaac tcagggccag cggcactttt
     2701 gccggcaagg cggacaaccc ttatttctac cttacccaaa acggcaatca ataccaattg
     2761 tcgcggtctt tttaccagca gtcctaccat cccttcgagc tttataccgc catcaactgg
     2821 acaacagcgc aacaatcgaa gctgtccatt tattaccaat tctccagcct gctgttttac
     2881 atccggcata tcgcaggggt tacatttaaa atccctctca ggcatggcgg caaatgattt
     2941 cgacaatctc tggcagtata agaaagctcc ccgccccgat cgctttcagc gcaccatctt
     3001 attgggcctg gtagcagcgg gtgtggtagc catcctcaac ctggccgatt ggtggttccg
     3061 cgaagagcat gtggcgaatt gggtattatt cctgctgctc acatttatgt tttggtgggg
     3121 cattttgcgc ctgatggtgg tttggaaaac ctggttgcgc attagagtgc cggaaacacc
     3181 cgcagcaatc acgggaaaaa cggtggccat tttcacaacc agttctcccg gcgagccgtt
     3241 gagcatgttc aaaaaaacac tggaggcttg ccgcaacatt cgctatcctc acactactta
     3301 tttgcttgat gataccggcg atcctgcctt tcgcgaagtg gcagagcaat acggtgccgt
     3361 gtggctggaa ctgaaaggat tgccgggcgc caaagcggga aaaataaatg ctgctttgca
     3421 gcaaaccgat gaggaattca tcctggtgct tgaccccgac catattcctt ttcccaactt
     3481 cctggatgaa gtgcttggct tttttgaag
//
LOCUS       DATIQF010000692         3522 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_41282, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000692 DATIQF010000000
VERSION     DATIQF010000692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3522
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41282"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..548)
                     /locus_tag="VLL95_11765"
     CDS             complement(<1..548)
                     /locus_tag="VLL95_11765"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSR39583.1"
                     /translation="MKKGIFVAVAFAMTALTANAQRRFTLKQCIDTAIANNITVLQSS
                     FQAERDAANYKQSKYNRLPEVSANLNYGGSRGRSIDPFTNQFVDQAFSNSNSFVNASL
                     PLFTGGQIKNTIDQNKEILNASQMDLQQAKDNLTINVIAAYLAVLNNENQLAVAKNQQ
                     EVSGKQVERLQIVFKEGATAPYT"
     gene            complement(554..1234)
                     /locus_tag="VLL95_11770"
     CDS             complement(554..1234)
                     /locus_tag="VLL95_11770"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR39584.1"
                     /translation="MLLSLKNLFKWVNVAGQRVYLLKDINLDIREGEFVSIMGPSGSG
                     KTTLLNVLGMLDAFDEGEYQFLHEHVHQLKEKQRSHLYKQYIGFVFQAYHLIDELTVY
                     ENIETPLIYKDIKSSERKALVADMLDRFNMVGKKDLFPSQLSGGQQQLVGIARALISK
                     PRLILADEPTGNLNSKQGEEIMEIFRKLNAEEGVTIVQVTHSEKNAAYASRIVHLMDA
                     RIEKEEKL"
     gene            complement(1285..2313)
                     /locus_tag="VLL95_11775"
     CDS             complement(1285..2313)
                     /locus_tag="VLL95_11775"
                     /inference="COORDINATES: protein motif:HMM:NF024743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat-containing
                     protein"
                     /protein_id="HSR39585.1"
                     /translation="MKQLLLTLTAVMFAFFCKAQQSPFLVKNFESTIREAEVYTSGGS
                     IEVMHQAGETNRIEVYVRGNNNRTFSKAEIEERLQNDYNLTIDVSGGKLYAKAEARKG
                     YRDWNNSLSFSFKVFVPESVDTKLATSGGRIHLNGVKGVLKFSTSGGSLHLDKVGGEL
                     DGATSGGSIHITNSKGNGKLTTSGGSINADACEGIMKLTTSGGSIKLSQLNGDFDAIT
                     SGGSVTADDISGTLETSTSGGSMRLSNMKCALSASTSGGSIHAEITKPVKYIKLGNSS
                     GNIELSLPANIGYDLDLRGNKISVPSLSNFSGDFSNESVKGQLNGGGIPVTAKSSGKI
                     TVNIVKYH"
     gene            complement(2417..>3522)
                     /locus_tag="VLL95_11780"
     CDS             complement(2417..>3522)
                     /locus_tag="VLL95_11780"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSR39586.1"
                     /translation="FSRIMLGLQLSIAIITVIAGVAFARNSEYQRNFDYGYNLESSMG
                     VVFNDSSSYLPLKNELAKIPEVTSLSGTRNHIAFGFRTPVMEADGLKKEACYMEVGSE
                     YVKTMQLKLLQGRDFDPGSEADYNHALLITQKMAAEFGWSEQEALGKRVRMDSIDFSV
                     VGIVKDFQMESLYNPLAPVALSLGKENRYQYLIVQAKPENLKKVYAKVNDAWKRLFPT
                     KPFNAFYQNQVKADAYATTEAIATIFKWFALVSILLTATGLFALVSLTALKKMKEIAL
                     RKVVGAKPGHIMMLINKNYFWIFGISAILGCAGGWALTKLLLDLIFIYNAGVSPGTLL
                     ISVLALFAITAVITGIKVWEAVRTNPVKLLRTD"
BASE COUNT          821 a          866 c          814 g         1021 t
ORIGIN      
        1 gtatagggag cagtggcgcc ctctttgaaa acgatctgca aacgctccac ctgcttgccc
       61 gacacttcct gctgattttt ggcaacggcc agctgatttt cattgttgag tacggccagg
      121 taagcagcaa tcacattaat ggtcaggttg tcctttgcct gttgcagatc catctggctg
      181 gcattgagta tctccttgtt ttgatcaata gtgtttttga tctggccgcc ggtgaacaat
      241 ggcagcgaag cattcacaaa agaattggaa ttggaaaagg cctggtctac aaactggttg
      301 gtgaatgggt caatactacg accacgactg cccccgtaat tcaaattggc actcacctcg
      361 ggcagccggt tgtatttcga ttgcttgtag ttggctgcat ccctttcggc ctggaatgat
      421 gattgcagca ccgtgatatt gttggcaatg gccgtgtcaa tgcactgctt cagtgtaaac
      481 ctgcgttgtg cattggccgt caaggcggtc attgcaaatg ctacggctac aaaaattcct
      541 ttcttcatcg caatcataat ttttcttctt tttcaattcg ggcatccatc aggtgtacaa
      601 tgcggctggc ataagcggca ttcttttcgc tgtgcgttac ctgcacgatg gtcacgcctt
      661 cttccgcatt cagtttcctg aatatttcca tgatctcctc gccctgtttg ctgttcaggt
      721 tgccggttgg ttcatcggcc aatatcagcc tgggtttgga aatgagcgcc ctggcaatgc
      781 ccaccaattg ctgctggccg ccactcagct gcgacgggaa caggtctttc ttgcctacca
      841 tgttgaaccg gtcgagcatg tcagccacca gggcttttct ttcgcttgat ttgatgtcct
      901 tgtaaataag cggcgtttca atgttctcgt acacggtcaa ttcatcaatg agatgataag
      961 cctggaacac aaacccgatg tattgcttgt acaggtggct tctttgcttt tctttcaact
     1021 ggtgcacatg ctcgtgcaaa aactggtatt ccccttcatc aaatgcatcc agcatgccca
     1081 acacattcaa gagggtggtt ttgcccgaac ctgatggacc catgatggat acaaactcac
     1141 cttcccggat atccaggtta atgtctttga gaaggtaaac acgttgtcca gccacattta
     1201 cccatttgaa aagattcttt aacgatagta acatctgtat ggcgcttgtt tattgaatgt
     1261 attgctgcag gttgctgaat gtagttagtg gtacttcaca atattcacag tgatcttgcc
     1321 gctgctcttg gctgtaacgg ggatgccgcc gccattcaat tgtcctttca cgctttcgtt
     1381 ggaaaagtcg ccgctgaaat tgctgaggct aggaactgat atcttgtttc cacgcaagtc
     1441 caaatcgtaa ccaatattcg caggcaggct cagttcaatg ttgccggaag aattgcccaa
     1501 cttgatgtat ttaaccggct tcgtgatctc agcatgaatg gagcccccgc tggtagatgc
     1561 ggacaaggca cacttcatat tactgagacg catgctgccg ccactggtgc tggtttcaag
     1621 ggttccgctg atatcatctg ctgttaccga tccgccgctg gtgatggcat caaagtcgcc
     1681 gttgagttgg ctgagtttga tagagcctcc agatgtggtc agtttcatga tgccttcaca
     1741 ggcatcggca ttgatgctgc caccactggt agtaagtttt ccattccctt tgctgttggt
     1801 aatatggata ctgccaccgc tggtagcgcc atccagttcg ccacctactt tgtcgagatg
     1861 aagactgccg ccactggtgc tgaatttaag cacccctttc accccgttga gatgaattct
     1921 gccaccgctg gtcgccagtt tggtatctac cgattcaggt acaaatactt tgaatgaaaa
     1981 actgaggcta ttgttccagt cgcgatatcc tttgcgggct tccgcttttg cataaagctt
     2041 gccaccgctt acatcgatgg tgaggttgta atcattctgc agtctttctt ctatttctgc
     2101 cttgctgaaa gtgcggttgt tattgccgcg aacatatact tcaatgcggt tggtttcacc
     2161 agcctggtgc atcacctcta tgctgccgcc tgatgtatat acttccgctt cgcggatggt
     2221 gctttcaaaa ttttttacca ggaagggtga ttgctgtgcc ttgcaaaaaa atgcaaacat
     2281 tacagcggtc agtgttagca ggagttgttt catggcttta tcatgtttgg ttgaaaggat
     2341 aggtatttgt tcggtgtgta cattcttcat tgggttgccc gtagccgcct ttggcgactg
     2401 ccagcacaaa tggagcttaa tcggtgcgca acagtttaac agggttggtt ctgacggcct
     2461 cccacacttt tatgcccgtg ataacggctg taatagcaaa cagcgccagc actgaaatga
     2521 gcaaagtgcc aggtgaaacc ccagcattgt aaatgaaaat caaatccaat aacagcttgg
     2581 tcagtgccca acctcctgca catcccagga tggcggagat gccaaaaatc cagaaatagt
     2641 ttttgttgat gagcatcatg atatgaccgg gctttgcccc taccactttg cgcaacgcaa
     2701 tctctttcat ctttttcaaa gccgtgagcg aaaccagtgc aaacaaaccg gtggcagtta
     2761 gtaaaataga caccaacgca aaccacttga aaatagtggc aatggcttct gtggtggcat
     2821 aggcatcagc ttttacctgg ttctggtaaa aggcattgaa tggttttgtt ggaaacagtc
     2881 gcttccacgc atcatttact ttggcgtata cttttttcag gttctctggt ttggcttgta
     2941 caatcaagta ctggtacctg ttttccttgc caaggctcaa agccaccggt gccagcggat
     3001 tgtacaacga ttccatttga aaatccttca cgatacccac caccgaaaag tcaatactat
     3061 ccatccgtac tcttttgccc aatgcctcct gctcactcca tccaaactcg gccgccattt
     3121 tttgcgtgat gagcagcgca tggttgtagt cggcttcaga gccggggtca aaatcacgcc
     3181 cctgcaatag tttcagctgc atcgttttta catactcact gcccacctcc atgtagcaag
     3241 cttccttttt gaggccgtct gcttccatta ccggtgttcg gaaaccgaag gcgatatgat
     3301 ttctggtacc cgacaaggat gtaacctcag gaattttggc cagttcattt ttcaatggca
     3361 ggtaactgga tgaatcattg aaaacaacac ccatcgaact ttcgaggttg tagccatagt
     3421 cgaagttgcg ttggtattca gaattcctgg caaaagccac accggctatt actgtgataa
     3481 tggcaatgga caattgtaat cccaacatga tgcgggaaaa ca
//
LOCUS       DATIQF010000693         7500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_11090, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000693 DATIQF010000000
VERSION     DATIQF010000693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7500
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11090"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..693)
                     /gene="panC"
                     /locus_tag="VLL95_11785"
     CDS             complement(<1..693)
                     /gene="panC"
                     /locus_tag="VLL95_11785"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:NF014611.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HSR39587.1"
                     /translation="MIIAKNEGSIRRVLDKWGPFSSQIAFVPTMGALHAGHIELIKAA
                     RSRAGLVVASIFVNPTQFNDRSDFAKYPKSIEQDINMLEAAGTDLLFLPDTGVIYPAG
                     TGHLPHYPLGSLETVFEGAHRPGHFQGVCQVVHRLLEIVQPGQLFMGQKDYQQCMVVA
                     NLLEQTNLPVQLQIVPTIRETSGLAMSSRNRRLDVAQLKIATAIFETLQWMCDRAYDM
                     PVHDLESAARERL"
     gene            778..1602
                     /locus_tag="VLL95_11790"
     CDS             778..1602
                     /locus_tag="VLL95_11790"
                     /inference="COORDINATES: protein motif:HMM:NF019924.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch synthase"
                     /protein_id="HSR39588.1"
                     /translation="MSTKKRILFIANEMSPYLELTEFAETVNRLAILSNNNNLEVRCI
                     MPRFGVINERRHRLHEVVRLSGINVSVDDDDFPLQIKVASLPNARLQVYFLDNEDLFK
                     RKFIFHDEEEKWFEDNNLRTVFFCKGALETVKKFGWPPDLIHCSGWMTGLIPLYLKTV
                     YKKEPVFAHSKVIYTLGPVTFEENLGSNFANIARISDVLKDKDMQVFASANNLAMLRG
                     GAMHADAITFGEPDEQIDPSLLKDFSKVRGKKVLRYPGPEADLTEYLNLYNDLAED"
     gene            1664..3154
                     /locus_tag="VLL95_11795"
     CDS             1664..3154
                     /locus_tag="VLL95_11795"
                     /inference="COORDINATES: protein motif:HMM:NF025458.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4270 family protein"
                     /protein_id="HSR39589.1"
                     /translation="MKFQVYLITVFSILASCTKIDTTRLGGELIPVVDNINTFDTILE
                     VQSFNYIPEDSTRMFLTEPHPAGGIAVDPLFGASKATLFFEMKPAIFPFSFAPADSIV
                     GFDSAVLVLNFRGYYGDSAAPVNYKLYEVDRKMQYDTSVRPNYTLTPNLAANTGKFWG
                     EKTMAPNRYRDTVAIKRGDSVYAKVTNQLRIPLNYQLASKLFFQAADTTAGAFKSDSL
                     FREYLPGFALTADQAAASLQYFGLRDATSQVTFYYRTKIVGKIDTTSKGFGFTATSAH
                     AVKFERNRAGAEINNFLNADPQAGASQIYVQTAPYTKVSVKIPGLKTLTNRIIHRAEL
                     RVVELTPNIGPQSQLTAPPILYLDVEEKDNNFKGVPFDLTPLTNYFCFPNNQIEFFYF
                     GGPTRTEQINGEKLNVYRFNIARHVQGIITRKEQVFNFRLSAPYYMVYNNCLNSNYTV
                     PSNYFFLKNTNGAVPNIPGNGRVRLAGGSHPDVNKRMQLRIIYSKL"
     gene            3194..4447
                     /gene="metK"
                     /locus_tag="VLL95_11800"
     CDS             3194..4447
                     /gene="metK"
                     /locus_tag="VLL95_11800"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR01034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HSR39590.1"
                     /translation="MPYLFTSESVSEGHPDKVADQISDALIDNFLAFDPNSKVACETL
                     VTTGQVVLAGEVKSKAYLDVQDIARDVIRKIGYTKSEYMFEANSCGILSAIHEQSSDI
                     NQGVDKKKREEQGAGDQGMMFGYATNETDDYMPLALDLAHKLLQELAALRRENKQIKY
                     LRPDAKSQVTLEYDDNNKPVRIDTIVVSTQHDDFDTEAKMQDRIKKDIINILIPRVKA
                     KYKKYASLFNDKIKYHINPTGKFVIGGPHGDTGLTGRKIIVDTYGGKGAHGGGAFSGK
                     DPSKVDRSAAYATRHIAKNLVAAGLCDEVLVQVSYAIGVAQPTSINVNTYGTAKVNLT
                     DGQISKVVESIFDMRPYFIEQRLKLRNPIYSETAAYGHMGRKPEVVEKSFRSPEGKMV
                     KKKVELFTWEKLDYVAKVKKAFKLK"
     gene            4529..5053
                     /locus_tag="VLL95_11805"
     CDS             4529..5053
                     /locus_tag="VLL95_11805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39591.1"
                     /translation="MKLSYDRSFFIAGIIALVVAIVISVQGKALQSPVTPLGILDLEF
                     ARSENRVDEVVNAWQFMSLTALWNVLIDFAFLAAYGYFFSKTMKYLSAGRSHTFWYRQ
                     YPLLNKLAWVPSWLDGIENAFMLGWLLRFVPAGSPAVVFWLVCVKFAVAFILVCIALP
                     AWVYNIYRRFKPIQ"
     gene            5055..5801
                     /gene="rlmB"
                     /locus_tag="VLL95_11810"
     CDS             5055..5801
                     /gene="rlmB"
                     /locus_tag="VLL95_11810"
                     /inference="COORDINATES: protein motif:HMM:TIGR00186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HSR39592.1"
                     /translation="MFIKQKNIIAGRNPVIEALQKGAGVDKVLLNRQASGDHIQQIKE
                     LAKQHNIPVQLVPVEKLNQLTNVQHQGVIAFKAAVTYHDLQQVIDFLNEKGEVPLLMI
                     LDGVTDVRNIGAIARSAVCCGAQAIIIPDKGVAALGEDAMKSSAGALEHIHICRVNSL
                     MKAIDTLHLNGIKVYASEMTASQMLHELNFVEPCAIVMGSEGKGVFSGIQKISDAVFK
                     IPMAGQFESLNVSVAAGMILYEAMKQRMQV"
     gene            5798..6658
                     /locus_tag="VLL95_11815"
     CDS             5798..6658
                     /locus_tag="VLL95_11815"
                     /inference="COORDINATES: protein motif:HMM:NF012885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39593.1"
                     /translation="MNSLIQLVECPRDAMQGWEHPIATEDKVAYINCLLQVGFHTLDC
                     LSFVSAKAIPQMADSHDVVKQMEKNGSTTKVLAIVLNKRGAEEAVAYDVIDVLGYPFS
                     ISPTFQKLNGNSTLSESWDRLMQIRDLGVAHKKQLCVYISMAFGNPYGDEYNAAVVTE
                     WVSKMQSEGIGIISLADTVGIATAQQVKDLCSSVVPAFPNLVVGAHLHSTSQNWEDKM
                     EAAVSAGIQRFDGALKGFGGCPMAKNELVGNMNTEWMIEWLEQRNLLEGLDHDQLAKA
                     GAIAERIFNR"
     gene            6676..>7500
                     /locus_tag="VLL95_11820"
     CDS             6676..>7500
                     /locus_tag="VLL95_11820"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF020459.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GSCFA domain-containing protein"
                     /protein_id="HSR39594.1"
                     /translation="MNFRLELTVKPFEKRINIQQPIALVGSCFTDHIGSRLRSLKFNV
                     LENPNGIVFNPISIERAVDAYIKDRRYTESDLFYHNELWTSWDFHGQFSHPDQQQCLD
                     GINASVEQAHRFLLKADWVIFTLGSAFVYELKESSGGSRTGEVVANCHKVPANQFVHR
                     LASLQEVSDSLGRTIEMLRQFNPGINIIFTISPVRHYREGLVENNRSKGALHLAVHKA
                     IQQFESVFYFPAYELIIDDLRDYRFFAEDLVHPNYAATQYVWEKFAEACIDEESKEL"
BASE COUNT         1977 a         1761 c         1858 g         1904 t
ORIGIN      
        1 gagtctttcc ctggcggccg attccaaatc atgcaccggc atatcataag ccctgtcgca
       61 catccattga agcgtttcaa aaatggcggt ggctattttc aattgcgcca catccagtct
      121 tcgatttcgg ctgctcatgg ccagccccga agtttcgcgg atggtgggta caatttgcag
      181 ttgaaccggc aggttcgttt gttccagaag gttggctacc accatgcatt gctggtagtc
      241 tttttgtccc atgaaaagct ggcctggttg cactatttcc agcaggcgat gcaccacctg
      301 gcataccccc tggaagtggc ccgggcggtg ggcgccttca aataccgttt ccagactgcc
      361 caatgggtaa tgaggcagat gaccggtgcc cgccgggtag atgaccccgg tgtcgggcag
      421 gaaaagcaga tcggtgccgg cggcctccaa catgttgatg tcctgttcaa tactctttgg
      481 gtatttggca aaatcggatc gatcgttgaa ttgggtggga ttcacgaata tgctggccac
      541 caccagtcct gcccgggacc tggctgcttt aatgagttca atgtgtccgg cgtgcaaagc
      601 ccccatggta ggcacaaacg cgatttggga ggaaaatggg ccccatttgt ccagtacccg
      661 gcgaatggaa ccttcatttt tagcaattat cataatggaa ctgtagttgg gtaagcgcct
      721 aatgcaacgt attttcaata cctttgccca ccttttacag gaaaacgaac ggattgaatg
      781 agtacaaaga aaagaatttt gttcatcgcc aatgagatgt ctccctacct ggaactcact
      841 gagtttgcgg agactgtgaa caggctggca atattatcca acaataataa tctggaagtt
      901 cgatgcatca tgccaagatt tggtgtgatc aatgaacgca ggcatagatt gcatgaagta
      961 gtcaggctga gcggtatcaa tgtgtctgtt gacgacgacg attttccgct gcagatcaaa
     1021 gtggccagtt tgccgaatgc ccgcctgcag gtttattttt tggacaatga agacctcttc
     1081 aaacgcaagt tcatctttca tgatgaagaa gagaagtggt ttgaagacaa taacttacgt
     1141 accgttttct tttgtaaggg tgctttggaa actgtcaaaa agtttggctg gcccccggac
     1201 ctgattcatt gctctggctg gatgaccggg ctcattcctt tgtacctgaa aaccgtttac
     1261 aaaaaggaac ctgtttttgc gcatagcaag gttatctata cactcggtcc ggtaacattt
     1321 gaagagaacc tgggcagcaa ctttgccaac attgcccgca tcagcgatgt gctcaaggat
     1381 aaggatatgc aggtatttgc ctcggccaac aacctggcta tgttgcgtgg cggtgccatg
     1441 catgcggatg ccattacatt tggagagccc gatgagcaga tagatccttc gctcctgaag
     1501 gatttcagca aggtgagagg caagaaggtg cttcgctatc ccggcccgga agccgattta
     1561 acagagtatt tgaacctcta taacgacctt gccgaggact aattgcggtc agctttattt
     1621 caaccttatt tattcaaaat actccgacct ggtgaaccgt gcgatgaagt ttcaggtata
     1681 cctgattacc gttttctcca ttctggcctc ttgtacaaaa attgatacaa cccgactggg
     1741 cggagaactc ataccggtgg ttgacaacat caacacgttt gataccatcc tggaggttca
     1801 gtctttcaac tatattcccg aagactcaac ccgcatgttc cttaccgaac cacatccggc
     1861 cggtggaata gctgtcgatc ctttgtttgg cgcttcaaaa gctactttgt tcttcgaaat
     1921 gaagcctgcc attttcccct tttcattcgc cccggctgat agcattgttg gattcgattc
     1981 agcagtgctg gtattgaatt ttcgcggtta ttatggagat agtgcggcac ctgtaaacta
     2041 caagctttat gaggtggaca ggaagatgca atatgataca tcggtacgtc ccaactacac
     2101 acttactcct aatcttgccg ccaatacggg caaattctgg ggagagaaga ccatggcgcc
     2161 caacaggtac cgggatacag tagccatcaa acgtggcgat tcggtttatg caaaagtgac
     2221 caaccaactt cgcatcccct tgaattatca actggcttca aagttgtttt tccaggccgc
     2281 tgacacaact gccggcgcat tcaaaagtga ttccctcttt agggaatatc tgcccggatt
     2341 tgcgctgacg gccgaccagg ctgctgcctc cttgcagtat tttggcctga gggatgccac
     2401 ttcccaggtg actttttatt atcgcaccaa aattgtgggc aaaattgaca ccacttcaaa
     2461 aggatttggt tttactgcta cctcggcaca tgccgtgaaa tttgaacgca acagggcagg
     2521 tgctgaaatc aacaatttcc tcaatgcgga tcctcaagcc ggagccagcc agatttatgt
     2581 tcagacagcg ccttacacca aggtgtcggt taagatccct ggattaaaga cgttaaccaa
     2641 caggatcata caccgggcag aactgcgtgt ggttgaactc actcccaaca taggccctca
     2701 atcacagttg actgccccac ccatattgta cctcgatgtg gaagaaaagg acaacaactt
     2761 caaaggtgtt cctttcgact tgacacccct taccaattat ttctgttttc ccaataacca
     2821 gatagaattc ttctatttcg ggggacccac gaggactgaa cagatcaatg gagagaagct
     2881 caatgtatac cggttcaata ttgcacggca cgtgcaaggc atcattaccc gaaaggagca
     2941 ggtgttcaat ttccgcctga gcgcacctta ttatatggtg tacaacaatt gtctgaacag
     3001 caactatact gttccctcta actacttctt cctcaaaaac accaatggtg cagttcccaa
     3061 tatcccgggc aatggccggg taagattggc cggtggcagt caccccgatg tgaacaagcg
     3121 catgcaattg aggattatct attccaaatt gtaaatacgt gccgcttata tttgcggcca
     3181 aatcgaaaaa accatgccgt atctcttcac ctctgaaagc gttagcgaag ggcatcccga
     3241 caaagttgcc gatcagattt ctgatgcact cattgataat ttcctggctt ttgaccccaa
     3301 cagcaaagtg gcctgcgaaa cactggttac cactggccag gttgtgctgg caggcgaagt
     3361 gaagagcaaa gcctacctgg atgtgcagga cattgcccgc gatgtgatcc gcaaaattgg
     3421 ttataccaag agcgaataca tgtttgaggc aaacagctgc ggcatccttt ctgccattca
     3481 tgagcaatca tccgacatta accagggcgt tgataaaaag aagcgtgaag aacaaggtgc
     3541 cggcgaccag ggcatgatgt ttggctatgc caccaatgaa accgacgact acatgccgct
     3601 ggcattggac ctggcgcaca agctgctgca ggaactggcc gctcttcgtc gcgaaaacaa
     3661 gcagatcaaa tacctgcgtc ctgatgccaa aagccaggta acgctggaat acgatgacaa
     3721 caacaagcct gttcgcattg ataccatcgt ggtttctaca cagcacgatg attttgatac
     3781 cgaagccaag atgcaggacc gcatcaagaa ggatatcatc aatattctca tcccacgtgt
     3841 aaaggctaag tataagaaat acgccagcct gttcaacgac aagatcaagt atcacattaa
     3901 ccccaccggc aagttcgtga ttggcggacc acacggcgac acaggtctca ccggacgtaa
     3961 gatcattgtt gatacttacg gaggcaaagg agcgcatggt ggtggtgctt tcagtggtaa
     4021 agaccccagc aaggttgacc gcagtgcggc gtatgctacc cgccacatcg ccaaaaacct
     4081 ggtggctgcg ggtttgtgcg acgaagtgct ggtgcaggtt tcctacgcca ttggtgtggc
     4141 acaaccaact tcaatcaacg tgaataccta tggcactgcc aaagtgaatc tgaccgatgg
     4201 ccagatcagc aaggtggtag agagcatttt cgatatgcgt ccatacttca ttgagcagcg
     4261 tttgaaactg cgcaatccca tttacagtga aacagctgcc tatggccaca tgggtcgcaa
     4321 gccagaggta gtggaaaaat cattccgctc tccggaagga aagatggtga agaaaaaagt
     4381 ggagctattc acctgggaaa agctcgatta tgttgcaaaa gtgaaaaagg ctttcaaact
     4441 gaaataatac taaaacacat cctgaagccc ctgccataaa caggggctta tttttttgat
     4501 ccgtttccat gctaccttca gatcttttat gaaattgtca tacgataggt ccttttttat
     4561 tgccggtatt attgcgctgg tggttgccat cgttatttct gtgcaaggga aagcgttgca
     4621 atcgcccgtc actccgctgg gcattctcga ccttgaattt gcccgcagtg aaaaccgggt
     4681 tgacgaagtg gtaaatgcct ggcagttcat gagcctgact gcactgtgga atgtgctcat
     4741 cgattttgct tttttggcag cctacggtta tttcttttca aaaacaatga agtacctcag
     4801 tgccggaagg agtcacactt tttggtaccg acagtatcct ttgctgaaca aactggcatg
     4861 ggtgccttca tggcttgatg gcattgaaaa tgcattcatg ctgggatggc tgctgcgatt
     4921 tgtgcctgcg ggatcgccgg ccgtggtatt ctggctggtt tgtgtgaaat ttgctgtcgc
     4981 cttcatactg gtttgcattg ccctgccagc ctgggtgtac aatatttaca ggcgatttaa
     5041 gccaattcaa taacatgttt atcaaacaaa aaaacatcat tgctggtcga aacccggtca
     5101 ttgaggctct tcaaaaaggc gccggtgtgg acaaggtgct gctgaaccgg caggcgagtg
     5161 gcgaccatat ccaacagatc aaagaactgg ccaaacagca caacattcct gtgcaattgg
     5221 tgccggtaga aaaattgaat cagcttacca atgtgcagca ccagggcgtc attgcgttca
     5281 aggctgcagt tacctaccac gacttgcagc aggtgatcga tttcttgaat gaaaaaggag
     5341 aagtgccttt gctgatgatc ttggatggtg tgaccgatgt tcgaaatatt ggtgccatag
     5401 caaggtcagc agtgtgctgc ggtgcacaag ccatcatcat tcctgacaaa ggagtagcgg
     5461 cgcttggcga agatgccatg aaatccagcg caggcgcctt ggaacacata catatttgtc
     5521 gcgtcaacag cctgatgaaa gccattgaca ctttgcacct gaatggcatc aaggtttatg
     5581 caagcgaaat gacagcctcg caaatgctgc acgaactcaa ctttgttgaa ccttgtgcca
     5641 ttgtcatggg tagtgaaggg aaaggtgttt tttcaggcat ccagaaaata agcgatgcgg
     5701 ttttcaaaat acccatggcc ggccagtttg aatcgctgaa tgtgtcggtg gctgcaggca
     5761 tgattttata cgaagccatg aagcaaagaa tgcaggtatg aatagtttaa ttcagttggt
     5821 ggaatgcccc agggatgcca tgcagggatg ggaacatcct atagctaccg aagacaaagt
     5881 ggcttacatc aactgcctgc tgcaggtagg ttttcatacg cttgactgcc tgagttttgt
     5941 ttcggcaaag gccattcctc aaatggccga cagccatgac gtagtgaagc aaatggagaa
     6001 aaatggcagc acaactaaag tgctggccat tgtgctgaat aagcgtggtg ccgaagaggc
     6061 ggtggcttac gatgtgatag acgtgctggg ttatccattc agtatttccc ccacttttca
     6121 aaaactgaat ggaaacagta cgctgagtga aagttgggat cgactgatgc agattcgtga
     6181 tttgggtgtt gcacacaaaa agcaattgtg cgtttatatt tcaatggcct ttggcaaccc
     6241 atatggtgat gaatacaacg ccgctgtggt aacggagtgg gtgtcaaaaa tgcaatcaga
     6301 aggcattggc atcatttcat tggcggatac agtgggcatt gccaccgcac agcaggtaaa
     6361 agacttgtgc agttccgtgg tgccggcctt cccaaacctg gtagtgggtg cgcacttgca
     6421 cagcacctcc caaaactggg aggacaaaat ggaagcagca gtatctgcag gcattcagcg
     6481 ttttgatggg gccctgaaag ggtttggcgg ttgcccaatg gctaaaaatg aattggtggg
     6541 caacatgaac actgaatgga tgattgaatg gctggaacag cgtaacctgc tggaaggact
     6601 cgatcatgat caactggcga aggccggcgc aattgctgaa agaattttta atcgctaagc
     6661 cttacaatac cgaatatgaa tttcaggttg gagttgacag tgaagccatt cgaaaagcgc
     6721 atcaatattc agcagccgat tgcgcttgtt ggcagttgtt tcactgatca tattggttcc
     6781 cgcttgcgat ccctgaagtt caatgtgctg gaaaatccca atggcattgt cttcaatcca
     6841 atcagtattg agcgtgctgt cgatgcatac atcaaggatc gccgctatac cgagtctgat
     6901 cttttttacc acaatgaatt gtggacttcc tgggatttcc acgggcagtt cagtcatccc
     6961 gaccagcagc aatgcttgga tggcatcaat gcctccgttg agcaggcaca ccggttttta
     7021 ttaaaagcag attgggtcat tttcaccctg ggttcagcat ttgtttatga actgaaggaa
     7081 agcagtggag gaagccgtac aggggaagtg gttgccaatt gccacaaagt gcccgccaat
     7141 caatttgtac atcgtctggc ttccttgcag gaggtttcgg attcactggg gcgtaccatt
     7201 gaaatgctgc ggcaattcaa tccgggtatc aatatcattt tcaccataag cccggttcgg
     7261 cattaccgtg aaggcctggt tgaaaacaac cgcagtaaag gtgcgctgca cctggcagta
     7321 cacaaggcaa tacagcagtt tgaatcagtg ttctattttc cggcctacga attgatcatt
     7381 gatgacctgc gtgattaccg cttcttcgcc gaagatcttg tgcatcccaa ctatgccgct
     7441 acgcaatacg tgtgggagaa atttgcagaa gcctgtatag acgaagaatc aaaagaatta
//
LOCUS       DATIQF010000694         7171 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_163086,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000694 DATIQF010000000
VERSION     DATIQF010000694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7171
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163086"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1978)
                     /locus_tag="VLL95_11825"
     CDS             complement(<1..1978)
                     /locus_tag="VLL95_11825"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR39595.1"
                     /translation="MRLLLLLLVTLPFTLWSQNTTVSGRVKNEKGDALQGVSVVVLGS
                     TSGVTSNDSGYFSINVKPNRAFALVFTYSGYNTYKQNFLLNKGENETVFIRLEPGTRE
                     LEEVKVTSKKSRQESGLISINPKTALKNPAPIIGIESMIKVLVGSNNELSNQYNVRGG
                     SYDENLAYINDFEFFRPYLVRNGQQEGLSFINPELAKNVNFYNGGFQARYGDKMSSVL
                     DVQYKKPTDFHGSAYLGLLEQGAHLEGSAKSGKVTYLVGARNRSLRNLLSSQETKGNY
                     LPSSSDLQAQIGWQPNAKWLLEMLGNISTTRFDLEPKESQQTTSVFTPYFSSNLGLDV
                     NYSGREIDRYNTRMVGLSATRIVNEHLRLKGMVSYFNNREEENINILGSYLFGERDFD
                     KSSPSFGLIVNPLGAGNYLQYARNELNVQVLNASIKGTYDKGMHYLQFGNSIEQNKIT
                     DVLNEFQYLDSAGFSLPNQPGPLELYSSIKGNADINVTRFYGYLQDNMVFNKINGFTL
                     QAGVRYNYNTLNNELLISPRVGFSYNPLHWAKDVIFKGSAGLYHQPPFYREMRRPDGS
                     INKDLKAQRSAQVSAGFDYAFKMMNRPFRLSTEAYYKDMWNVVPYDIDNVRLRYFGEN
                     MAKAYAYGVEGRLFGELVKDAESWLSLGFIRTMED"
     gene            2174..2737
                     /locus_tag="VLL95_11830"
     CDS             2174..2737
                     /locus_tag="VLL95_11830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39596.1"
                     /translation="MQDLEPYYRWRDLYVAEEDERSPFFGVDHSQFEYSTTIYNYYIH
                     PQWDDMGSKTLFLKILYADYKKHFVIIELIGEWNDAIENDIMTLRREVTDHLMDQGIT
                     KFILIAENVLNFHSSEADYYEDWYDNVADENGWIICLNMPESSQYDFKKMKLQYYIEL
                     KEMDDWRRYQPEGLFQKIDNELKKRLA"
     gene            complement(2760..3359)
                     /locus_tag="VLL95_11835"
     CDS             complement(2760..3359)
                     /locus_tag="VLL95_11835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39597.1"
                     /translation="MSLLLNRTIFGNPANAGNVLSREAALALFHDWVKNPRLQLHMKQ
                     VAQLMKCWAAEKEGLDEAGQWKWEMAGLLHDADWDQWPETHCQKIVEYLEEQQVDPGV
                     IRAIASHGPAHFGVEPETNMDKMLYAFDELSGLVHAYSLMRPGGYEGMDVKGVKKRLK
                     EKSFAANVSREDIADGCQRAGIELEALIEFIIPRQATVN"
     gene            3544..4698
                     /locus_tag="VLL95_11840"
     CDS             3544..4698
                     /locus_tag="VLL95_11840"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSR39598.1"
                     /translation="MNFQLTEEQEAVRQAARDFAQQECLPGVIERDEKMIFPKEQVSQ
                     LADLGFMGMMVKPEYGGSGMDTVSYVLAMEEISKIDASVSVCMSVNNSLVCYGLQEFC
                     NEEQKQKYLTPLAQGKKDGELYIGAFLLSEPEAGSDATSQRTTAIDMGDHYLLNGIKN
                     WITNGSSASVYLVVAQTDAAKGSHGINAFIVEKNWPGVSVGAKENKMGIRGSDTHSIS
                     FTDVKVPKENRIGPDGFGFKFAMKTLAGGRIGIAAQALGIASGSYELALKYSKERKAF
                     GKEIMHHQAIQFKLADMATKIECARLLCMKAAWEKDNGLDYTLSSSMAKVYASEAAMW
                     CSTEAVQIHGGYGYVKEFHVERLMRDAKITQIYEGTSEVQRIVISRSILK"
     gene            4818..5486
                     /locus_tag="VLL95_11845"
     CDS             4818..5486
                     /locus_tag="VLL95_11845"
                     /inference="COORDINATES: protein motif:HMM:NF013345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HSR39599.1"
                     /translation="MAVNIQVYQEIQSFCSQKNVTLVAVSKTKPVKDIQALYDMGQRD
                     FGENYVQELVEKQPQLPADIRWHFIGHLQSNKVKYIASFVHLIHGVDSLKLLKEINKQ
                     AAKHNRVIHVLLQVHIAKEETKFGLDAVELDQLLHAPELTGLNNILIIGLMGMASFSD
                     DVELVRSEFKSLKALFDKHSSQSTINNQLSTLSMGMSGDYQIAIEEGSNMVRIGNLLF
                     GARV"
     gene            complement(5567..6106)
                     /locus_tag="VLL95_11850"
     CDS             complement(5567..6106)
                     /locus_tag="VLL95_11850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39600.1"
                     /translation="MKKLLWALVPVMALMLSCEKQMFNSNSPNGEKKFGAVENGVKVP
                     FKGTMVGIPTSVFNDCIPGQPIVKSMMLGGSGSHGGEIQVSKSWWTANTCQFDAGNML
                     LVEEGDGVVTVDNGDSYNIHAVVTNTLTSMTFTGKVIIDGGTGKFQGCKGEIDMINGR
                     FQADQTLVWDATGYIIFAK"
     gene            6410..>7171
                     /locus_tag="VLL95_11855"
     CDS             6410..>7171
                     /locus_tag="VLL95_11855"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSR39601.1"
                     /translation="MISVKNVTLAYGKRVLFDEVNINFTKVNCYGVIGANGAGKSTFL
                     KILSGEIEPNKGTVEITPGERLAVLKQNHFEFDEQTVLNTVLMGHKVMWDVMHKKDAI
                     YADPDATEEDYMRAGELEAEFGEMGGYTAESDAGALLSNLGVREEYHQSLMKDIPGTL
                     KVRVLLAQALFGNPDILLLDEPTNGLDIETISWLENFLADYENIVLVVSHDRHFLDAV
                     CTHVADVDRAKIKVFTGNYTFLYESSQLMARQISDK"
BASE COUNT         1826 a         1753 c         1789 g         1803 t
ORIGIN      
        1 ggtcttccat ggtgcgtata aaaccgaggc tcagccagct ttcggcatct ttcaccaatt
       61 cgccaaacaa tcggccttcc accccgtagg cataagcctt ggccatattc tccccaaaat
      121 agcgcagccg cacattatcg atatcgtagg gcaccacgtt ccacatgtct ttgtagtagg
      181 cttcggtgct caggcggaag gggcggttca tcattttgaa ggcgtaatca aagccagcac
      241 taacttgagc actgcgttgg gccttcaggt ctttattgat actgccatca ggccggcgca
      301 tttcccggta aaagggcggc tgatggtata aaccggcact gcctttgaaa atgacatctt
      361 ttgcccaatg caaaggatta tagctgaatc ctacacgtgg cgagatcagc aattcattgt
      421 tgagcgtatt gtaattatat cgaacgcctg cctgcagtgt gaaaccattg attttattga
      481 acaccatatt gtcctgcagg tatccgtaga accttgtcac gttaatgtcg gcattgcctt
      541 tgatactcga atacaattcc agcggacccg gttggttggg caggctgaat cctgcactgt
      601 ccaggtattg aaactcgttg agtacatcgg ttattttgtt ttgctcaatg ctgttgccaa
      661 attgcaggta gtgcatccct ttgtcgtagg tgcctttaat gctggcattc agcacctgca
      721 cattcagttc attgcgggca tactgcaggt aattaccggc acccaaagga ttcacgatca
      781 agccaaaaga cggagagctc ttgtcgaaat ctctttctcc aaaaagatag gagcccagta
      841 tgttgatgtt ttcttcttcg cggttgttga agtaactgac catgcctttc agccgcaggt
      901 gttcattcac tatacgtgtg gctgacaaac cgaccatcct ggtattgtaa cgatcaattt
      961 cgcgaccgga gtagtttaca tccagcccga ggttggaaga gaagtagggc gtgaataccg
     1021 aagtggtctg ctggctttct ttgggttcca aatcaaacct tgtggtgctg atgttgccca
     1081 gcatttccaa caaccacttc gcattcggtt gccatccgat ttgcgcctgc aggtcgctgc
     1141 tgctgggcag gtagttgccc ttggtttcct ggctactcag caggttgcgc aggctgcggt
     1201 tgcgggctcc caccaggtaa gtcactttac ccgatttggc gctgccttcc aaatgagcac
     1261 cctgctccag caatccgagg taggcactgc catgaaaatc ggtgggcttt ttgtattgca
     1321 catccagcac gctgctcatc ttgtcgccat agcgggcctg gaagcctccg ttgtagaagt
     1381 tcacattttt ggccagctcc gggttgatga aactcaaccc ttcctgctgc ccgttgcgca
     1441 ccaggtaggg gcgaaaaaat tcgaagtcat tgatataagc caggttttca tcgtagctgc
     1501 cgccccgcac attgtactgg ttgctcagtt cattattgct gcccaccagt actttgatca
     1561 tgctctcaat gccaataatg ggagcgggat ttttcaacgc cgttttgggg ttgatggaaa
     1621 taaggcccga ctcctgccgg ctttttttgc tggtcacttt tacttcttcc agttcgcggg
     1681 tgcccggctc cagccggatg aacacggttt cattttcgcc tttattcagc aggaagtttt
     1741 gcttgtaagt gttgtagccc gaataagtaa agaccagcgc aaaggccctg ttgggcttaa
     1801 cgttgatgga aaaatagccg ctgtcgttgc tggtgacacc actggtgctg cccaatacca
     1861 ctaccgacac accctgcagg gcatcacctt tttcgttttt cacccggccg cttacggtgg
     1921 tgttttgcga ccataacgta aaaggcagcg taaccaacag caatagaagc aggcgcaacg
     1981 gcatagtctt tgtcagtaag tgtcagggtt gaaaattagg gaagaatcta caacgcatgg
     2041 gggtggtttg tctacatcga tcctcgttta gggggataac gaatggtttt gttataaacg
     2101 gctttcgggg tccgggtatt tgatttagtt ggcagcagcc tgctaaattt gctgctgaag
     2161 cgaatgatca accatgcagg acctggaacc atactatcgt tggcgcgact tatacgtggc
     2221 tgaagaagat gagcgttcac ccttttttgg agtggaccac agccagtttg aatattcgac
     2281 caccatctac aattattaca tccatccgca gtgggatgat atgggcagca aaacactttt
     2341 tctgaagatt ttgtatgccg actataaaaa gcattttgtc attattgaat tgataggcga
     2401 atggaatgat gccattgaaa acgacatcat gaccttgagg cgcgaagtga cggatcattt
     2461 gatggaccag ggcattacca agttcatcct cattgccgaa aacgtcctca actttcacag
     2521 cagcgaagcg gattattacg aggattggta cgacaatgta gccgatgaaa acggctggat
     2581 catttgcctg aatatgccgg aaagcagcca gtacgatttc aagaaaatga aattgcagta
     2641 ctacatcgaa ctgaaggaaa tggacgactg gcggcgctat cagccggaag gattattcca
     2701 gaaaatagac aacgagctta aaaaaaggct ggcatagtgc cggccttttt tgcagggtat
     2761 cagttcacag tggcctgccg gggaatgatg aattcaatca atgcctccag ttcaatacct
     2821 gcccgctggc atccatcggc aatgtcttcg cggcttacat tggcggcaaa gcttttttct
     2881 ttcagtcttt tttttacgcc ttttacatcc atgccttcat acccgccggg gcgcatgagg
     2941 ctgtaggcgt gcaccagtcc gctcagttcg tcgaaggcat aaagcatttt gtccatgttg
     3001 gtctcgggct ccacgccaaa atgcgccggt ccgtggctgg caatggctcg tatcactcca
     3061 ggatccacct gctgctcttc caggtactcc actattttct ggcagtgggt ctcgggccat
     3121 tgatcccaat cggcatcatg cagcagcccg gccatttccc atttccattg gccggcctca
     3181 tcgaggcctt ccttttcggc tgcccagcat ttcatcagct gggccacctg cttcatgtgc
     3241 aattgcagcc tcggattttt cacccaatcg tgaaacaaag caagggcagc ctcccggctg
     3301 agtacatttc cggcattggc ggggttgcca aatatggtgc ggttgagaag gagcgacata
     3361 tggtttctaa tttttgcggg aagatgcccg gcaatttgct aaaaaaatgc ctttgccttt
     3421 tgacgggcaa atgctgtttt gccagtgctg tttgcagaat ctgtaacaac ggaaaaaata
     3481 gttgcaaaaa caaccatttg gggaagcctt cccatttatt tttgcgccca ttatacgatt
     3541 gctatgaatt ttcaactgac tgaagagcag gaagccgtac gacaggcggc ccgcgatttt
     3601 gcccaacagg agtgcctgcc cggcgtaatt gaacgtgacg aaaagatgat ctttccaaaa
     3661 gagcaggtga gccagctggc cgacctgggc tttatgggca tgatggtaaa acccgaatat
     3721 ggcggcagcg gcatggacac cgtgagctat gtgctggcca tggaggagat cagcaagata
     3781 gacgccagcg taagtgtgtg catgagcgta aacaacagcc tcgtgtgcta cggtttgcag
     3841 gagttttgca acgaagaaca aaagcagaaa tacttaacgc cattggcgca aggcaaaaag
     3901 gatggcgaat tgtacatcgg cgctttcctg ctgagcgaac ccgaagccgg cagcgatgct
     3961 accagccagc gtaccaccgc catcgatatg ggcgatcatt atttgctcaa cggcatcaag
     4021 aactggatca ccaatggcag cagtgccagc gtttacctcg tggtggcaca gaccgacgct
     4081 gcgaaaggaa gccacggcat caatgcgttc atcgttgaga aaaactggcc cggcgtttca
     4141 gtaggagcca aggaaaacaa gatgggcatc cgcggcagcg acacgcacag catcagcttt
     4201 acggatgtga aagtgcccaa ggaaaaccgt atcggccccg atggttttgg tttcaagttt
     4261 gccatgaaaa ccctggccgg cggccgcatt ggcatcgccg cacaagcgtt gggtattgcc
     4321 agcggcagct acgagctggc gttgaaatat tccaaggaac gcaaagcttt cggcaaggag
     4381 atcatgcacc accaggccat acagttcaaa ctggcagata tggctaccaa aattgaatgt
     4441 gcccgtttac tgtgcatgaa agcggcctgg gaaaaggaca acggactgga ctatacgctc
     4501 agctcaagca tggcaaaggt ttatgccagc gaagccgcca tgtggtgcag caccgaagcc
     4561 gtacaaattc acggaggtta cggctacgtg aaagagttcc atgtggagcg cctgatgcgt
     4621 gacgccaaga tcacccagat ttacgaaggc accagcgaag tgcagcggat cgtgatcagc
     4681 agaagcattt tgaaataagc gaataaaaaa gctccagcat cctggagctt tttttatcag
     4741 ttattttgcg ccggcctttg cgctttacca aacatcgttg tgtcactcac tgcaccggca
     4801 gtgcatactt ataccaaatg gcggtcaata ttcaggttta ccaggaaatt caaagctttt
     4861 gcagccagaa aaatgtcact cttgttgccg taagcaaaac caagccggtt aaggatatac
     4921 aagccctgta tgatatgggc caacgcgact ttggcgaaaa ctatgtgcag gagctggtag
     4981 agaaacaacc acaattaccg gcggatatcc gttggcattt catcgggcat ttgcagagca
     5041 acaaggtcaa atacatcgct tcgtttgtgc atcttataca tggggtggac agcctcaaat
     5101 tgcttaaaga gatcaacaaa caggcggcca aacacaaccg ggttattcat gtgctgctgc
     5161 aggttcatat tgccaaagaa gaaaccaagt ttggactgga tgcggtagaa cttgaccaat
     5221 tgctgcatgc ccccgaattg accgggctaa acaatattct tatcatcggc ctgatgggta
     5281 tggcttcctt cagcgatgat gtggaactcg ttcgcagcga attcaaatcg ctgaaagcgc
     5341 tattcgacaa acacagttct cagtcaacaa tcaacaatca actatcaact ctttcaatgg
     5401 gcatgagcgg cgattatcaa attgccatcg aagagggaag caacatggtg cgcattggca
     5461 acctgttatt tggggcaagg gtttagttgt tcagcaatcc gcgcaaaaaa actgcctgga
     5521 ttttctccag gcagttgaca atcattttgc tttcaatagg agatcatcat ttggcgaaaa
     5581 tgatgtagcc agtagcatcc caaaccagtg tttgatcagc ctggaagcga ccgttgatca
     5641 tgtctatctc gcccttgcag ccttggaatt ttccagtacc gccgtctata attactttac
     5701 cagtaaaagt catgctcgtg agagtattag tgacaacagc gtgaatattg taagagtcgc
     5761 cattgtcaac agttaccact ccatcgcctt cttcaaccag tagcatattg ccggcatcaa
     5821 actggcaggt attggctgtc caccaacttt tgctgacttg aatttctccc ccgtggctgc
     5881 cgcttccacc aagcatcatg ctcttaacga tgggttggcc aggaatacag tcattgaaca
     5941 ctgaggtagg aattccaacc atagttcctt taaagggcac ttttacacca ttttctacgg
     6001 caccaaattt cttttcgcca tttggagagt tactattgaa catttgtttt tcacacgaaa
     6061 gcatcagggc cattacagga accaaggccc atagtaattt tttcataata cgatagattt
     6121 aggggtgaga aaaaatctgt tggagcaggc ggcgcaaact ggctggtgca gccaatcttt
     6181 gatggccttc agtatccaat cagccttgcc aaaataccag cgattgtcat ctttttcatt
     6241 gacgggagcc atcggttttc aggccattat ttcgtaaatt ctattgatgc agaattttcc
     6301 tgaaggcagg ggcagaaatg acgaaaaccc cgattaatta agcatttcga aacattcttt
     6361 cgaccaaact gccctacctt tgcgcctcaa tttttgtttc cggtaatcta tgatcagtgt
     6421 aaaaaatgtg acccttgcct acggcaaaag ggtgctgttc gacgaagtga acatcaactt
     6481 caccaaggtc aattgctacg gggtgattgg tgccaacggt gcaggcaagt cgacgtttct
     6541 gaaaatcctc agtggcgaaa tcgagcccaa taagggcacg gtggaaatta cgcccggcga
     6601 acgcctggcc gttttgaagc agaaccactt cgaatttgac gagcagacgg tgctcaatac
     6661 cgtgctgatg ggccacaaag tgatgtggga cgtgatgcac aagaaggacg ccatttacgc
     6721 cgatccggat gccaccgaag aagactacat gcgagccggt gaactggaag ctgagtttgg
     6781 cgaaatgggc ggctacaccg ccgaaagcga tgcaggtgcc ctgttaagca acctgggcgt
     6841 gagggaagaa taccaccaaa gcctgatgaa ggacataccc ggtaccctga aagtgcgggt
     6901 gctgctggca caggccttat ttggcaatcc tgacatcctg ctgcttgacg aaccgaccaa
     6961 cggcctcgat attgaaacca tcagctggct ggaaaacttc ctggcggatt acgaaaacat
     7021 cgtgttggtg gtgagccacg accgtcactt cttggatgcg gtttgtaccc acgtggccga
     7081 tgtggaccgt gccaagatca aagtatttac cggcaactat accttcttgt acgagagctc
     7141 tcaactgatg gcgcgccaga tttccgacaa g
//
LOCUS       DATIQF010000695         1812 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_193483,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000695 DATIQF010000000
VERSION     DATIQF010000695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1812
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193483"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..504
                     /locus_tag="VLL95_11860"
     CDS             <1..504
                     /locus_tag="VLL95_11860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39602.1"
                     /translation="EAFPAMKEHLGKNQVELLMPSDYLNDETKKKLYKEVQFEMSGMF
                     KFVESMQKKIRGSEKGDVKGAANDLQYISASNADPKVWRAVGKFAGDMGLDAVLVIET
                     SLYYDGKTLSLDKIVASIIGPNTVPFDENDKKYYAPFGPLKGYLEGINYGWTETFAPD
                     GPIWLAD"
     gene            1024..1179
                     /gene="rpmH"
                     /locus_tag="VLL95_11865"
     CDS             1024..1179
                     /gene="rpmH"
                     /locus_tag="VLL95_11865"
                     /inference="COORDINATES: protein motif:HMM:TIGR01030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HSR39603.1"
                     /translation="MKRTFQPHNRRRKSVHGFRKRMQTANGRKVLASRRAKGRYKLTV
                     SDESKLK"
     gene            1288..>1812
                     /locus_tag="VLL95_11870"
     CDS             1288..>1812
                     /locus_tag="VLL95_11870"
                     /inference="COORDINATES: protein motif:HMM:NF024748.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HSR39604.1"
                     /translation="MMRISILGVFLLFLSRLTAQPRTDAFLTNLLADAGPVAKSVMAA
                     PDKYRVQIIYTQIDRDAKNKPHFRHYYFNYDPQLYFNPASMVKMPLAFLTLEKLNSLK
                     NTGINQTTTVQIDSSQPWQHPFYRDTTSATGFPTLGHFIKKVFLISDNDAYNRLYQFV
                     GQQQIHQQLRSKGYP"
BASE COUNT          523 a          427 c          425 g          437 t
ORIGIN      
        1 gaagcatttc ctgctatgaa agagcatttg ggcaagaacc aggtcgaact gctgatgcct
       61 tccgactatc ttaatgatga aacaaagaag aaactataca aggaagtcca gtttgaaatg
      121 tcaggaatgt tcaagtttgt ggaaagtatg cagaagaaaa taaggggcag tgagaagggc
      181 gatgtgaaag gtgcggccaa tgatttgcaa tatatcagcg cttccaatgc ggatccaaaa
      241 gtgtggagag cggttggcaa atttgcaggc gatatgggcc ttgatgcggt attagtgatc
      301 gaaaccagcc tctattatga tggtaagacg ctgagcctcg ataaaatagt tgcctcaatc
      361 attgggccca acacggtgcc ctttgatgaa aatgataaga agtattacgc tccctttggc
      421 cccctcaaag gatatcttga gggaatcaat tatggctgga cggagacttt tgcccctgat
      481 ggcccaattt ggctagcaga ttgaaaaaag ggcaactggt gaaaagtgat tttgaaggaa
      541 ctggtgaggt atatggcaga attacggatg aaacattgaa agtcgtgaga gaggctgctg
      601 agaagttaaa aagcaaatag aatgtgccag ttttggatac tttatttgtt gcagattcca
      661 gaaaacactt gatagccagg taagcgagga ctatatgtat tactggccaa agccctgaat
      721 gcaagaactg caagtacttg gtttgtgctt gcgttttatg aattaagtac tgtggttcct
      781 aagcgcaggg ctttgtctgg ccaattccat tttcctcggc tataagggtc tgaatggacc
      841 tattacatca taaaaaacca taaatattcc tcatttatcc ttgcatcccc ctacctttgc
      901 cgtcctttca tcccgcctgg gggcgggagc aggcatggtg gcctgcagac cccggcgaaa
      961 taaatggaaa aatggaccgt tctcccggcc cgcatttcat aagaaagaaa aaagaaactg
     1021 agtatgaaac gtacattcca accgcacaac cgtcgtcgca aaagcgttca tggtttccgc
     1081 aagcgcatgc agactgccaa cggccgtaaa gtgctggcca gccgccgtgc caagggtcgc
     1141 tacaaactga cagtaagcga cgaaagcaag ctcaagtaat ttagaccgcc ctgcccaaag
     1201 gcagttcccg gaaaaaaata tagagccctc ccaccggagg gcttttttgt tgctggcaga
     1261 aattcatcct ccgcttatct ttcggccatg atgcgcattt caatccttgg agtctttctc
     1321 ctcttccttt cgcggctaac agcacagccc cgcaccgacg cttttttgac caacctgctg
     1381 gctgacgccg gcccggtggc caaaagcgta atggcagctc ccgataaata ccgggtgcag
     1441 atcatttata cgcaaataga ccgcgatgcc aaaaacaagc cgcatttcag gcattactat
     1501 ttcaattatg acccgcagtt gtacttcaac cccgccagta tggtgaaaat gccactggca
     1561 tttctgacac ttgaaaagtt gaatagcctg aaaaatacag gcatcaatca aaccacaacg
     1621 gtacaaattg atagtagcca accctggcag catccttttt accgcgatac tacctctgcc
     1681 accggcttcc cgaccttggg ccattttata aagaaggtat ttctcatcag cgacaacgat
     1741 gcttacaatc ggctctacca atttgtaggt caacagcaga tccaccaaca gctgcgcagc
     1801 aaaggctatc ct
//
LOCUS       DATIQF010000696         2250 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_239332,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000696 DATIQF010000000
VERSION     DATIQF010000696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2250
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239332"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VLL95_11875"
     CDS             <1..220
                     /locus_tag="VLL95_11875"
                     /inference="COORDINATES: protein motif:HMM:NF016144.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GrpB family protein"
                     /protein_id="HSR39605.1"
                     /translation="SLALKNHLVFRDALLKDTALVKEYATLKQALAASTGMNREKYTQ
                     AKTDFILAVLAANGFTETELAEIAAANR"
     gene            411..857
                     /locus_tag="VLL95_11880"
     CDS             411..857
                     /locus_tag="VLL95_11880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39606.1"
                     /translation="MEILNMKRLGMVLIPGLALLILASCRKIPDSRSNCTLGGSISAA
                     SNLNEDTLLINNLLRELKQLSEESKCTTTDIGKFVEFGENTCGGPIGYLAYNANSDSV
                     CFLKKVAHFNLQHKALNKKYSLSYPCVIPKTPVSVICKNGHFELQY"
     gene            complement(972..1520)
                     /locus_tag="VLL95_11885"
     CDS             complement(972..1520)
                     /locus_tag="VLL95_11885"
                     /inference="COORDINATES: protein motif:HMM:NF041635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STM3941 family protein"
                     /protein_id="HSR39607.1"
                     /translation="MNPQAEIAFNKKKIWPHLLGALVFAVLGTGMIGLALNAKNQLLV
                     QVVFFTAGLAGLLFFGLIAVVHLVKMAKNKPALIITDDGLFDNSSGLSAGFIRWQDIK
                     KLNVTRTGNQASLVIILKKPEKYIERETNFLKKAAMRINNKMSGSPVHIPLSYLDIDW
                     PTLSELIANKRFPQKPAAGQEG"
     gene            complement(1586..>2250)
                     /locus_tag="VLL95_11890"
     CDS             complement(1586..>2250)
                     /locus_tag="VLL95_11890"
                     /inference="COORDINATES: protein motif:HMM:NF024581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HSR39608.1"
                     /translation="GIFAFLNYLPYSKHLHILFAFPNAWYARPQVQGKMTNMPEIQKE
                     VALAIGVDISQDPVLSQLPEAPPNQFGAKDIFDLSLKNLLDAYSCTECGRCSAACPAN
                     TTGKVLSPRAIMMKTRDRAEQVMKVMDQNNGQWVDDGKSLLHDYITVEELRACTTCNA
                     CVEECPVSISPLDIILKTRRYLILDESNSPGEWNAMFGNIENNFAPWKFSPDEREAWA
                     QG"
BASE COUNT          594 a          497 c          559 g          600 t
ORIGIN      
        1 cagcctggcg ctgaaaaatc acctcgtgtt cagggatgct ttgttgaaag ataccgcact
       61 ggtgaaggag tatgccacgc tgaaacaagc actggctgcc agcaccggca tgaaccgcga
      121 aaaatacacg caggccaaaa cggattttat actggcggtg ttggctgcca atggatttac
      181 agaaacagaa ctggcggaaa tagcagcagc gaaccggtga ggagttgcta ttgataaact
      241 ccctgcctga aaccaggagt agcggcggca aaagagtgta gtattcttgg tctaattaat
      301 tttcggagta gcaggtgata acacctgcaa cggcggcaat tgcaccaaca gttataagaa
      361 aacatgcgca tgattgacgt tgctttttaa gagacttaaa actacattag atggaaattt
      421 taaatatgaa gagattgggg atggtactga taccggggct agctttattg atactggcat
      481 cctgtaggaa aattcctgat tctaggagta attgcacttt gggtggtagt atttctgcag
      541 catctaattt gaatgaggat actttgctaa ttaataattt attacgtgag ttgaaacagc
      601 tttctgaaga aagcaaatgc acaacaaccg atatcggaaa atttgtggaa tttggtgaaa
      661 atacatgtgg gggacctata ggctacttgg cctacaacgc taatagtgat tctgtatgtt
      721 ttttaaagaa agtagctcat ttcaatttgc aacataaggc gctgaacaaa aagtattccc
      781 taagttaccc ttgtgtaata cccaaaactc cggtgagcgt catttgtaaa aatggccatt
      841 ttgaattaca gtattgattg gtaattggag tttcaattca taggaaagta acgccgctgc
      901 tggtgctttc accaacagct ccttaattaa tgtttggagt tgcaggtgat aacacctgca
      961 acggcggcaa atcatccttc ctgtcctgct gcaggttttt ggggaaagcg tttgttggct
     1021 atcaattcac tcaaagtagg ccagtcaata tcaaggtaac tcaatgggat gtgtaccggc
     1081 gagcccgaca ttttgttatt gatgcgcatg gcggcctttt tgagaaaatt agtttctctc
     1141 tcgatgtatt tctctggctt tttcaaaatg atgacaaggg aagcctggtt gcctgtcctg
     1201 gtcacattca gcttctttat atcctgccat ctaataaagc ctgcggagag gccactcgaa
     1261 ttgtcgaaaa ggccgtcatc ggtaatgatg agggcgggtt tgttttttgc catcttcacc
     1321 aggtgcacca cggcaataag accaaagaat aacaggccgg ccagtcctgc cgtaaaaaat
     1381 acgacttgca ccagcaactg gttcttagcg ttcaaggcca aaccaatcat ccctgtaccg
     1441 agcaccgcaa aaaccaaggc gcccaataaa tggggccata tttttttctt attgaaagcg
     1501 atctctgctt ggggattcat gtaaacgcaa gattggaatt gaacgatgct gtgcgtgttt
     1561 ctcaacgaat aaaaatcctt cccactcacc cctgcgccca agcctctctt tcatcggggc
     1621 tgaatttcca gggtgcaaag ttgttttcaa tattgccaaa catggcattc cattcgccgg
     1681 ggctgttgct ctcatcgagg atgaggtagc ggcgggtttt caaaatgata tcgagcggcg
     1741 atatgctcac ggggcattct tccacgcagg cattgcaggt ggtgcaggcc cgcagttctt
     1801 ccacggtgat gtaatcgtgc aacaggcttt taccatcgtc cacccactgt ccattgttct
     1861 ggtccatcac tttcatcact tgctcggccc ggtcgcgggt tttcatcatg atggcacggg
     1921 ggctcagcac tttgccggtg gtgttggcag ggcaggcggc gctgcagcgg ccacactcgg
     1981 tacaactgta agcatccagc aggtttttca agctcaggtc aaaaatgtct ttggcgccaa
     2041 actggttggg cggcgcttct ggcaattgac tcagcaccgg gtcctgcgaa atgtcgacac
     2101 cgatggccaa tgccacttcc ttctggatct cgggcatatt ggtcattttg ccttgtacct
     2161 gaggacgggc ataccacgca ttggggaaag caaacaggat gtgcaggtgc ttgctgtaag
     2221 gcaggtaatt gagaaaagca aaaatgccgg
//
LOCUS       DATIQF010000697         2222 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_56783, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000697 DATIQF010000000
VERSION     DATIQF010000697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2222
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56783"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..796
                     /locus_tag="VLL95_11895"
     CDS             <1..796
                     /locus_tag="VLL95_11895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39609.1"
                     /translation="NDSSDVQLNIKDAKGNLVRNYSNKKDEQEVTGYPGGPQAEALLP
                     TEKGLNRFNWDLRHESLPGVKGQFLNADYRGASVPPGDYQVQLKVNNDSSSVAIKILA
                     DPRVAPQPDAFAEQYQLCSSIDATVRTMHTDVNRMRAVKKQVDDLNGLLKDRPESDTL
                     IKTGKALANKIAAWEKQIITTQQETFQDVINYYNRLSAEMLDLRGRMENAQHPKVPDG
                     HKKVYQQLMNEWQGYKAALEQIINNDLPAFNKLFKEKQIPAVILPK"
     gene            complement(867..>2222)
                     /locus_tag="VLL95_11900"
     CDS             complement(867..>2222)
                     /locus_tag="VLL95_11900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39610.1"
                     /translation="INCIEVSPHDKAAVYVAATAYKFNNKQPMLYKSNDYGKTWTKIV
                     SGIPDGAYTRCIREDEEKRGLLFAGTETGLYVSWNDGADWEQLQLGLPITPITDLKVH
                     KGNLVAATMGRSFWILDDLQMLRNYDATSFGKSMAVYRPRDVFRTSGGSMLDGNFKRG
                     ENGVGAASLQGGVNAPAGAVIYYTLPADLADTATLYLDVIDDIGKTIRTFSSKADPDF
                     VGYPGGPGAEPVLPTQKGLNRFVWDLRFPTLKGVPTVFIEGSFQGRKVAPGNYLLRLR
                     LSGEEKTAPVRVLPHPLIKATKADYADQQTWQKKVEDDINAIHQSVVNMRKVKKQLTE
                     FNTLTKDDKSMKELQEKAKAIVEKLSKWEDELVQNKAQSNDDIINFVNKLSADFIFLR
                     GEMDTNIPIVNEGAKQQYDVLHAQWEKLKADMQSVIDNEVSAFNKMCIEKQVSKLIIP
                     K"
BASE COUNT          569 a          588 c          522 g          543 t
ORIGIN      
        1 caatgattct tcagatgtgc agctcaacat taaggatgca aaaggcaacc ttgtccgcaa
       61 ctacagcaac aaaaaggacg agcaggaagt gaccggctac cccggtggcc cgcaggccga
      121 agcactgctg cccacagaaa aaggtttgaa tcgattcaac tgggacctgc ggcacgaaag
      181 tcttcccggc gtaaaaggac aattcctgaa tgccgactac cgtggggcct cagtgcctcc
      241 cggagattac caggtgcagt tgaaggtgaa caacgattcc tcttcagttg ccatcaaaat
      301 tctggctgac ccccgcgtgg ctccccaacc cgatgccttt gcggagcaat accaactctg
      361 cagcagcatc gatgctacgg tgcgtaccat gcacaccgat gtgaacagga tgcgggccgt
      421 gaagaagcag gtagacgatt tgaatgggtt gctgaaagac cgccccgaaa gtgataccct
      481 gatcaaaacc gggaaagcac tggccaacaa aattgccgcc tgggaaaaac agatcatcac
      541 cacgcaacag gaaaccttcc aggacgtgat caactactac aacaggctga gcgccgaaat
      601 gctggacctg cgtggacgca tggaaaatgc acaacatccc aaagtgcccg atggacacaa
      661 aaaagtatac cagcaattga tgaacgaatg gcaaggctac aaagcagcat tggaacaaat
      721 catcaacaac gacttgcctg catttaataa gctcttcaag gaaaaacaaa ttcctgccgt
      781 gatccttccg aaataaagcc ggtgggtaca aatgaaaaga ggctgatctg caacagacca
      841 gcctcttttt tattgcctga tcaagatcac tttggaatga tcagtttaga aacctgcttt
      901 tcaatacaca ttttattgaa ggcagacacc tcattatcga tcaccgattg catgtctgct
      961 ttcagttttt cccactgtgc atgcagcaca tcgtattgct gtttggcgcc ctcattcacg
     1021 atgggaatat tggtgtccat ttcgccacgc aggaaaatga aatcagcaga tagcttgttt
     1081 acaaaattga taatgtcatc gtttgactgg gctttgttct gcaccagttc atcctcccat
     1141 ttgctgagct tctccacaat cgcttttgct ttttcctgca attccttcat cgacttgtca
     1201 tccttggtca gggtattgaa ttcggtcagt tgctttttca ctttccgcat attcactacc
     1261 gactggtgga tagcattgat atcatcttcc acttttttct gccaggtttg ctggtcggca
     1321 tagtcggctt tggtggcttt gatcagggga tgcggcaaca ccctgaccgg agccgttttt
     1381 tcttcgccgc tcaggcgcag gcgcagcagg taattgcccg gcgcaacctt ccttccctgg
     1441 aaactgcctt caataaacac ggtgggcacg cctttgagcg ttggaaaccg caagtcccat
     1501 acaaacctgt tcaatccttt ttgagtgggc agaacaggtt cagcaccagg accgcccggg
     1561 taacccacga aatcaggatc ggccttggaa gaaaaagtgc ggatggtttt tccaatgtca
     1621 tcaattacat cgaggtataa ggtggcagta tctgccaggt cagccggcag ggtataatag
     1681 atcactgctc ctgcgggtgc gttcacccca ccttgcaggg aagccgcgcc tacaccattc
     1741 tctccccttt tgaagttgcc atccagcatg ctgccaccgc tggttctgaa cacatcgcgg
     1801 ggacgataca cagccatcga tttaccaaag ctggtcgcat cataatttcg aagcatctgc
     1861 aaatcatcga gtatccagaa ggaacgtccc atggttgcgg ccaccaggtt gcctttgtgc
     1921 actttcaaat cggtaatggg cgtaataggc aggccgagtt gcaactgttc ccaatcggcg
     1981 ccgtcattcc acgacacgta taagcccgtt tcggtaccgg caaacaacaa tcctcttttc
     2041 tcttcgtctt cccggatgca acgggtgtaa gcgccatcgg gaatgccgct cactattttg
     2101 gtccatgttt ttccatagtc attcgactta tacagcatgg gctgcttgtt gttgaatttg
     2161 taggcagtgg cagcaacgta cacagcggct ttatcatgtg gcgacacttc aatgcagttg
     2221 at
//
LOCUS       DATIQF010000698         1506 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_163143,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000698 DATIQF010000000
VERSION     DATIQF010000698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163143"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1328
                     /locus_tag="VLL95_11905"
     CDS             <1..1328
                     /locus_tag="VLL95_11905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39611.1"
                     /translation="YVLFGVLKALKAEKTIALTAIVVTMLAVPVWMAVQEWDDHDRSQ
                     KTMAPDLAINYLESCAPNAILFSFGDNDTYPLWYAQEVLGIRKDVRVINYSLLGIDWY
                     INQLRYKVNDSDPMDVIWSAPQIEGDKLNYAFYDPRPGFEAPQNLHSILKDWIGSEDA
                     ARKYNAGDEMIPVYPTNNFYIPVDKNEVVKNGTVSAKDLSSVVDTIRFQVPKQVMLKN
                     DLAVLAVIGGSNFKRPVYFTSKFDELGFQGYLRRDGMAYRFVPIANQEVNNDWAFEKM
                     MKTFRFGNAETPGVYFDEENRRHLNNIRQAYADVALSLSAAGQKDSAQKLLQRVDKMM
                     AKENMPYGLVSRYALHNQTSLMLVEAAYRAGDKALAEKIAREVKKELQQEMQYYQAIG
                     EKRADRMSFEVQRSQMLLQMLGQMEEVLNPKQSPEKQLLIGGDSGAQIK"
BASE COUNT          411 a          352 c          398 g          345 t
ORIGIN      
        1 tatatgttct gtttggcgta ttgaaggcgc tgaaagcgga aaaaactatc gcactcactg
       61 ccatagtggt taccatgctg gcagtgccgg tgtggatggc agtgcaagag tgggacgacc
      121 atgaccgcag ccaaaagacc atggcacctg atctcgccat caactacctc gaaagttgtg
      181 ctcccaatgc catcctgttc agctttggcg acaacgatac ttacccgctt tggtatgccc
      241 aggaagtgtt gggtattcgc aaggatgtgc gggtcatcaa ctacagtttg ttgggtattg
      301 attggtacat caaccagctg cgctacaaag tgaatgacag tgatccgatg gatgtgatct
      361 ggagtgcacc gcaaatagag ggagacaagc ttaattatgc attctatgat ccgcgtccgg
      421 gttttgaagc ccctcagaat ttgcattcaa ttctcaagga ctggattggc tctgaagatg
      481 cagcacgcaa gtacaatgcc ggtgatgaaa tgataccggt gtatcctacc aacaacttct
      541 acattccggt tgacaagaat gaggtggtga aaaacggaac cgttagcgcc aaagacctta
      601 gcagcgtggt tgataccatt cgcttccagg tgcccaagca ggtaatgctg aaaaacgacc
      661 tggctgtttt ggcggtcatt ggtggcagca atttcaaacg cccggtttac ttcacctcca
      721 agtttgacga attgggcttc cagggttacc tccgcaggga cggtatggcc tatcgctttg
      781 tgcccatcgc caaccaggaa gtaaacaacg actgggcatt tgaaaagatg atgaagacat
      841 tccgcttcgg taatgcggaa acaccgggcg tttacttcga tgaagaaaac cgccgtcacc
      901 tcaataacat ccgccaggct tatgcagatg tggctttgag cctctcagct gccggccaaa
      961 aggacagtgc gcaaaagctg ctgcagcggg tggacaaaat gatggccaaa gagaacatgc
     1021 cttacgggtt ggtaagccgt tatgccctgc acaaccaaac cagcctgatg ttggtggaag
     1081 ctgcctatcg tgctggcgac aaagctttgg ctgaaaagat tgcccgtgaa gtgaaaaagg
     1141 aactgcagca ggaaatgcag tactaccagg ccattggcga aaagcgggct gatcgcatga
     1201 gctttgaagt gcagcggtca cagatgctgc tgcaaatgct ggggcagatg gaggaagtgc
     1261 tgaatccgaa gcagagcccg gaaaagcaac tgctgatagg cggcgattct ggcgcccaga
     1321 taaaataacc attgcaagag taatagcgaa agcgggcccg aaatgagccc gcttttattt
     1381 attgatcaat aaatccaagg aatgagccgc caggtctttt tcttatagtc gctgtaattg
     1441 ggaaattttt gcagtagcaa cctttcctca tgatccattt tcataagaag caccaccaac
     1501 aacagc
//
LOCUS       DATIQF010000699         2772 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_239384,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000699 DATIQF010000000
VERSION     DATIQF010000699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2772
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239384"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..729
                     /locus_tag="VLL95_11910"
     CDS             <1..729
                     /locus_tag="VLL95_11910"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HSR39612.1"
                     /translation="PAYLSLLSKVYLFSFRKGWLRSNPSYRTHYFVRNLIREGDTVID
                     IGANLGYYSTEFARLVGSKGKVWSVEPIPMYRKVLLQNVKSLPQVTVLPYALGETEGT
                     ISMGLPFADQHRHGLMKVLTKEEKEKAPEIFEVELKHPQKLFSQLSEIQYIKCDIEGY
                     EVPVIPAMRELISQRMPVMQIETEGENKRIICNLLNDLGYHLFFVGEKGLVPFPDPSQ
                     LLPGDLIGIPPQRLADIQHLTAHA"
     gene            722..1477
                     /locus_tag="VLL95_11915"
     CDS             722..1477
                     /locus_tag="VLL95_11915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39613.1"
                     /translation="MPEASKRMAVLFVFRYPAWAAFFGMLSMAVFRLPLWLNRRLSFW
                     RLMGSGRNGTFDIVPDFRQWAILAVYPDSLHHTVSETDDVKILSNNILGRFITTWVSF
                     FKAEGHAILLSPEEGHGLWNGQPVFGELERKAADWDGPIAVMTRATIRLSRAKQFWRH
                     VNAVAAQMATAPGFITSYGIGEAPFIKQATFSIWTSKAAMQEFAYKMPQHKEVIRKTY
                     SEKWYSEDMFTRFRILKVWNLPQLEQQLWPDAL"
     gene            1652..>2772
                     /locus_tag="VLL95_11920"
     CDS             1652..>2772
                     /locus_tag="VLL95_11920"
                     /inference="COORDINATES: protein motif:HMM:NF014344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase family protein"
                     /protein_id="HSR39614.1"
                     /translation="MAKKAAASHLMVTSEIGTLKRLLVHSPDSGLGKVVPSKAQDWLF
                     EDIVHLDTIRRKEYDYYTKVLLYFLDPSKVQGKLKSIDATKNKRNFYKPDHPDFYKSD
                     KVIELQWLLAEILQDEKIKLKLVASVCALEAVPYNYQMKLMECEAPRLAKVFISGTSD
                     ENEMLFAPIPNFIFTRDIGIVINDYVLLNKPAKQARTREALLAKYIFFNHPLFANYRD
                     KILEIPETHHSFLNPKEGDQRKVTLEGGDVMVVSKDHLLIGVSERTSWEAAHQAIKLL
                     FSKKVVKKVTVVKIPKKRDYMHIDTVFTQVKRNVWVLLGNFSRKAVKRMDEDAIERIL
                     EGSPKKDEKITLIQFNSKDVEHPVYFDNLEDLLEDISKN"
BASE COUNT          764 a          702 c          661 g          645 t
ORIGIN      
        1 cctgcctacc tgtcgctgct gagcaaggtt tacctgttca gtttccggaa aggatggctg
       61 cgctccaacc catcgtaccg tacccattat tttgtgcgta acctgatcag ggaaggagac
      121 accgtaatag acatcggcgc caaccttggg tactacagca ctgaatttgc caggctggtg
      181 ggcagcaaag gcaaagtttg gtccgtggaa cccataccca tgtaccggaa ggtgctgctg
      241 caaaacgtga agtcgctgcc acaagtcacc gtgctaccgt atgcattggg cgaaactgaa
      301 ggcaccatca gcatgggcct gccttttgcc gaccaacacc ggcacggcct gatgaaagtg
      361 ctaaccaaag aagaaaagga aaaggcccct gaaatatttg aagtggagct gaaacacccg
      421 cagaaacttt tctcccaact ttctgaaatt caatacataa aatgtgatat cgaaggctac
      481 gaagtacctg tgattcccgc catgcgagaa ctcatcagcc agcggatgcc ggtgatgcaa
      541 attgaaacgg aaggtgaaaa caagcgcatc atttgtaacc tgctcaacga tttgggttac
      601 cacctgtttt tcgtagggga aaagggattg gtaccttttc ctgacccttc ccaattactt
      661 cccggcgacc tgattggcat accgcctcag cgtttggccg acatacaaca tctgacagca
      721 catgcctgag gcttcaaaaa gaatggccgt ccttttcgtg ttccggtatc ccgcctgggc
      781 tgctttcttt ggtatgttgt ccatggcagt attcagactg ccgctctggt taaaccggag
      841 actcagcttt tggcgcctga tgggcagcgg ccgaaacggc actttcgaca tcgtacccga
      901 cttcaggcaa tgggccatac tggctgtata cccggattct ttacatcata cggtttcaga
      961 gacagacgat gtaaaaatat tgagcaacaa tattttaggc agatttatta ctacctgggt
     1021 ttcgtttttc aaagcagaag gtcacgccat tctgctctcc cctgaagaag gccatggtct
     1081 ttggaatggc caaccggttt ttggtgaatt ggaaaggaaa gcggcagatt gggacggccc
     1141 aatcgcggtg atgaccaggg ctaccatccg gctttccagg gccaaacagt tctggcgaca
     1201 tgtgaatgca gtggccgccc aaatggcgac ggcaccaggt tttattacca gctatggtat
     1261 tggcgaagct ccctttatca agcaggccac tttcagcatt tggacaagca aggcagccat
     1321 gcaggagttc gcctataaaa tgccgcagca caaagaagtg atcaggaaaa cctactcgga
     1381 aaaatggtac agcgaagaca tgtttacccg cttccggatc ctgaaagtgt ggaacctgcc
     1441 gcaactggag cagcagcttt ggcctgatgc cctgtgaata cctttccctg ctgccaattt
     1501 tgccagcaca tttaaactcc tattttagcg gcccggtcgc ctgccaagtc cttgtttgcc
     1561 ctgttcacct cctttcgggc acttttagat gactagcaac ttcttcagac cgggtacgga
     1621 aaggtggata ttattcacga aactccattt tatggctaaa aaagcagcag cctcacacct
     1681 gatggtgaca tcagaaattg gtacgctcaa gcgattgctc gtacacagtc ccgacagcgg
     1741 tttgggaaaa gtagttcctt caaaagcaca agactggtta ttcgaagaca ttgtacatct
     1801 cgacaccatt cgccggaaag agtatgacta ttacaccaag gtcctcctct atttccttga
     1861 tccttccaaa gtgcagggaa aactcaaatc cattgatgcc actaaaaaca agcgcaattt
     1921 ttacaagccc gatcaccctg atttctacaa atcagacaag gtgattgaat tgcaatggct
     1981 gctggccgaa attctgcaag atgaaaaaat caagctcaaa ctggtagcct ccgtttgtgc
     2041 actggaagct gttccttaca actaccagat gaaactgatg gaatgcgaag caccgcgact
     2101 ggccaaagtc tttatcagcg gcacgagcga cgaaaatgaa atgcttttcg ctcccatccc
     2161 caatttcatt tttacccgcg acatcggcat cgtgatcaac gattacgtgt tgctgaacaa
     2221 gcctgccaaa caggcccgca cccgcgaagc cctgttggcc aaatacattt tcttcaacca
     2281 tccccttttc gccaattaca gggataagat cctggagatt cctgaaacgc accattcctt
     2341 cctgaatccc aaggaaggcg accagcgcaa agtgacgctg gaaggcggcg atgtgatggt
     2401 agtaagcaaa gaccatttgc tcattggtgt aagcgaacgc accagttggg aagcagcgca
     2461 ccaggccatc aaactgctgt tcagcaagaa ggtggtaaag aaagtgacag tggtaaaaat
     2521 cccgaagaag cgggattaca tgcacattga tacggtattc acccaagtga agcgaaacgt
     2581 atgggtgctg ctgggcaatt tttcacgcaa ggcggtgaaa cgcatggatg aagatgccat
     2641 cgaaagaata ctggaaggat cgcccaaaaa ggatgagaag atcaccctca ttcaattcaa
     2701 cagcaaggac gtagagcatc ctgtttattt tgacaacctc gaagacttgc tggaagacat
     2761 cagcaaaaat ga
//
LOCUS       DATIQF010000700         1946 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_71867, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000700 DATIQF010000000
VERSION     DATIQF010000700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71867"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..504
                     /locus_tag="VLL95_11925"
     CDS             <1..504
                     /locus_tag="VLL95_11925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39615.1"
                     /translation="TLEIRYKGKSIADVLDMTVEDAVEFFQPVPWLYRKIKVLQDVGL
                     GYITLGQSAVTLSGGEAQRVKLATELGKKDTGKTFYILDEPTTGLHFQDIKMLLDVLN
                     KLVDRGNTVLVIEHNMDVIKVADHIIDLGPEGGSGGGQILFEGTPEELVKVKNSHTGK
                     YLKLEMG"
     gene            580..1176
                     /locus_tag="VLL95_11930"
     CDS             580..1176
                     /locus_tag="VLL95_11930"
                     /inference="COORDINATES: protein motif:HMM:NF025380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HSR39616.1"
                     /translation="MKNLQRNILGLIVLAAIAIVAYTIGKSMGRKDTDTRLINNYSFV
                     KNIIELAGLQVSGTTTFKSTNTDSSGGFWSSIKNVFAENTAVVTIPYTAKYGVALKES
                     DLYIEKKDSIVHIAVPATQLLSLELHMDRLETTSKKGLLIMEDDEYFNRFQKKLYSDT
                     RQQLESNKTYLQQSQHRISNILQQSYQPLGLKVEVAFR"
     gene            complement(1320..1784)
                     /locus_tag="VLL95_11935"
     CDS             complement(1320..1784)
                     /locus_tag="VLL95_11935"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR39617.1"
                     /translation="MTRTMELQWVFKPFAELANQELYALLRLRSEVFVVEQNCVFLDM
                     DDKDQPCHHLLGYKGDLLAAYTRIVPAGISYDNYASIGRVVTSPQARGEGRGKELMEE
                     SIKRLHGLYGIVPIKIGAQLYLKKFYESLGFEQCGEVYDEDGIDHIPMLRNV"
BASE COUNT          549 a          464 c          490 g          443 t
ORIGIN      
        1 accctggaga tacgctacaa gggcaagagc attgccgatg tgctggacat gacggtggaa
       61 gacgccgtgg aatttttcca gcccgtgcca tggctttacc gcaagatcaa agtgctgcag
      121 gatgtgggct tgggctacat cacgctgggg caaagcgccg ttaccctgag tggtggcgaa
      181 gcacagcggg tgaagctggc cacagagttg ggcaaaaaag acaccggcaa aacattctat
      241 atcctcgacg aacctaccac cggcctgcat ttccaggaca tcaaaatgct gctggatgtg
      301 ctgaacaaac tggtggaccg cggcaatacg gtactggtga tagagcacaa tatggatgtg
      361 atcaaagtgg ctgaccacat catcgacctt ggccctgaag gcggcagcgg tggcgggcaa
      421 atattatttg aaggcacgcc ggaagaattg gtgaaagtga agaacagcca tacggggaag
      481 tatttgaagt tggaaatggg gtgaatgatg atttatgatt taggatttat gatttaggat
      541 tgactgcagg gttggaatgg gtttcataaa ttgcatgcta tgaaaaacct gcagcgaaat
      601 attcttggcc tcattgtatt ggccgctatt gccattgtgg cttataccat tggcaaaagc
      661 atgggcagaa aagacactga caccaggctc atcaacaact attcgtttgt aaaaaacatc
      721 attgagctgg caggcctgca ggtaagcggt accaccactt tcaaaagcac caacaccgac
      781 agcagcggtg gtttctggag cagcatcaaa aacgtatttg ccgagaatac ggctgttgtt
      841 accattcctt ataccgccaa gtatggcgtg gccctcaagg aaagcgacct ctacattgaa
      901 aaaaaagaca gcattgtgca cattgcggtg ccggccaccc aattgctgag cctggaactg
      961 cacatggacc ggctggaaac caccagcaaa aaaggattgc tcattatgga agatgatgag
     1021 tatttcaaca ggttccagaa gaaactctac agcgatacgc ggcagcaact ggaaagcaac
     1081 aaaacctacc tgcaacaatc gcaacatcgc atcagcaaca ttttacagca atcctaccag
     1141 ccgctggggt tgaaagtgga ggttgcgttt aggtaagaac cgtttgtggt ttgttgtttt
     1201 tggttcatag tagttggctg ctttgcgatt ggtaaaaatc tccccattgc agaaggatta
     1261 gcgatctgaa gtgaaactgg catagcgaac aacaaacaaa aaactaaaaa ctaaaaacct
     1321 taaacgtttc tcaacatcgg tatatgatca atcccatcct catcatatac ttcgccacat
     1381 tgctcaaagc cgagtgattc atagaatttt ttgaggtaca actgtgcccc gatcttgatg
     1441 ggcactatgc cgtacaaacc gtgcagcctt ttgatcgact cttccatcag ttccttgccc
     1501 cggccttcgc cccttgcctg aggagaggta accaccctgc cgatggacgc ataattatcg
     1561 taggaaatgc ccgcgggcac aatgcgggtg taagcagcca gcaaatcgcc tttgtagccc
     1621 agcaggtgat ggcatggctg gtctttgtcg tccatgtcga ggaacacaca gttttgttcc
     1681 actacaaaca cttcgctgcg caggcgaagc agcgcataca actcctggtt ggcgagttcg
     1741 gcaaacggtt tgaataccca ttgcagttcc atagttcgcg tcattagtct gatattcgca
     1801 agtaacagat ttcgccaata ccagcagcaa agaattcggc agcgcatgca aacaacagca
     1861 actcccctgg taaccgtaca tgaatgcagc attaaaagag agcagcgcct ggtcatcagc
     1921 gggctgtcgt tccagctgca cgccgg
//
LOCUS       DATIQF010000701         1790 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_193579,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000701 DATIQF010000000
VERSION     DATIQF010000701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193579"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            250..1131
                     /locus_tag="VLL95_11940"
     CDS             250..1131
                     /locus_tag="VLL95_11940"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HSR39618.1"
                     /translation="MLPEQLDLFGGPPKPPKRIREEEPAARPASIELNEGPTVPAAEP
                     APTEADPVSAETSFPDADMPDWVTATDTFEEPPAVPSEPAPTQEIANIVEIHEEAIPE
                     APIYSVIAYLEPEEPLDDAEAAAADAAAGEAKAEEEDAREYPTPKLQVEPISEDAILI
                     VQVKNEKQKARTSNEDVSPDGLNIPPDEILFQRQYYTMRETSDMFSISHSMLRYWENE
                     FDVLQPRKNKKGDRYFRPIDIKNMQLIYNLLKVRKFTIEGAKEYLRKHNKALDTFELI
                     QKLEKMKLFLQELKAHL"
     gene            1128..1661
                     /locus_tag="VLL95_11945"
     CDS             1128..1661
                     /locus_tag="VLL95_11945"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HSR39619.1"
                     /translation="MMASSFYKTFGLAFLCSLSLVVSSAQKLYQVLPDAEEKKLFMGI
                     ITVADIKGDTSFKWYAETLKYYRPNKELVDAFKAKSGQFQLVLFAGTWCHDSQAILPK
                     YIACAEAAGLADSVITIIGTDRQKTTLANLHKVFNVTLVPTMIVMKEGKEVGRITEYG
                     NTGLPDAELAALLGKLD"
BASE COUNT          463 a          480 c          457 g          390 t
ORIGIN      
        1 gtcagtggcg aggctttcat gtaagcccct ccctgaggat cggccgcagg ccaatcctca
       61 ttgtaccgtg gcgaacttgt tcgcccaagc ggaaaagcaa aaggcccgtg agccgaggga
      121 aagactgaag accacagacc acggaccaca gtcggaagac caccgacgac tgacgacagt
      181 cagagaccca ttttcacatt gtggatacgt tcatttgcat tttgggtgac gcctgatgaa
      241 cttgcagcca tgttaccaga gcaattggat ttgtttggag gacctcccaa acctcccaag
      301 cgtattcggg aggaggaacc ggcagcacgg ccggcgtcca ttgagttgaa tgaagggcca
      361 acggtacctg ctgctgaacc tgcgcctacc gaggccgatc cggtttccgc tgaaacttcc
      421 tttcctgatg ccgacatgcc ggactgggta acagcaaccg acacttttga ggaaccccct
      481 gccgtgcctt ccgaacctgc gccgacccaa gaaatcgcca acatcgtgga gatccatgag
      541 gaggcaattc ctgaggcccc gatctactcg gtgattgcct acctggaacc cgaggaaccg
      601 ctggatgatg cggaagccgc cgcggccgat gccgctgccg gtgaagcgaa ggcggaggaa
      661 gaggatgccc gggaatatcc cactcccaaa ctgcaggtgg aacccatttc ggaggatgcc
      721 atcctgattg tgcaggtgaa aaatgagaaa cagaaagccc gcacttccaa tgaggatgtt
      781 tcgccagacg ggctcaatat tccccctgat gaaatactct tccagcggca gtactacacc
      841 atgcgtgaga cttccgacat gttcagtatc tcgcactcca tgctgcgcta ctgggaaaac
      901 gagtttgatg tgctgcagcc ccgcaagaac aagaagggtg accgctattt ccgtcccatc
      961 gatatcaaga acatgcagct gatttacaac ctgctgaaag tgcggaaatt caccattgaa
     1021 ggcgccaaag aatatttgcg taagcataac aaagcgcttg atacatttga gttgatccag
     1081 aagctggaga aaatgaaact tttcctgcag gaactgaaag cacatttatg atggcgtctt
     1141 ctttttacaa aactttcggg ctggcctttc tgtgcagcct gtcgctggtt gtttcttccg
     1201 cccagaagct ttaccaggta cttcccgatg ccgaggagaa aaagttgttc atgggcatca
     1261 tcaccgttgc cgatatcaaa ggagatacca gtttcaaatg gtatgcagaa acgctgaaat
     1321 attaccgacc caataaagag ctggtcgatg ctttcaaggc caaaagcggc caattccaac
     1381 tggtgctttt tgccggcacc tggtgccacg attcccaagc cattttaccc aaatacatcg
     1441 cctgtgcgga ggccgctggc ctggctgatt cggtgataac catcattggt accgacaggc
     1501 agaagaccac cctggccaat ttgcacaaag tgttcaacgt aacgctggtg cccaccatga
     1561 tcgtaatgaa agaaggcaaa gaagtgggcc gaataacgga gtatggcaat acgggccttc
     1621 ctgatgccga actggccgcc ttattgggca agctggatta actgcctgtt ctgcgcatca
     1681 tcagattttc attggcagcg gcaaattcca gctggtgcct gctcatcaac cgaatcaatt
     1741 caaggttgac ggattcacgc agtttgaaaa aatctttcac agctacttcc
//
LOCUS       DATIQF010000702         2040 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_269858,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000702 DATIQF010000000
VERSION     DATIQF010000702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2040
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269858"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1898)
                     /locus_tag="VLL95_11950"
     CDS             complement(<1..1898)
                     /locus_tag="VLL95_11950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39620.1"
                     /translation="MASYGGKIWKLPVDGSSAQEIAFNVDVRLEMGPRLYFNYPVKDT
                     SHALATQIRDAVPSPDGKKLAFTVLNRLYVMDYPNGSPRRVSNHDFVEAMPAWSPDGT
                     QLAFVTWDEKEGGNLYKANLSGKTTLTKLSSEAAFYMQPAWSFNNRITIWKASKRLFK
                     DSESPFYDGSEAELFWMPAAGGAMTKIKVTSDKGNVHFTKDTSRIFLNGPGGTLLSVN
                     WEGLDEKVYARITGITTFGSVADADDHSKHGHTSELPTTDQAMPGIKYVMGKPMSTAD
                     PVNYCMLPEGASMKEPQQMPTPAGTIFMAPVGNMAVAQVNNNVYVVTIPEVGKVPNIN
                     VGEPSASSFPARQLTEIGGEWPFWEEDGKKVHWSLGNGHWVYDVARAKFVEDSMKQVK
                     KADAAKAADSIKALMAKGPEAKKLADSLAKKAKDSLTALYKADTAKARADSIAKVEQK
                     KKEKYTAEETQVKVYYAKDMPNGTILLKNARIVTMKGDEVIENGDVLIVNNRIKAIGK
                     TGTLQVPAGTKEIDCTGKTLTPSFVDTHSHMWPQWGLHKNTIWIYAANLAYGVTTTRD
                     PQTATTDVLTYSDMVDAGMMPGPRVYSTGPGVGYWMYNLQSYEQTKNVLKQYSKYYHT
                     QYIKMYLVG"
     gene            complement(1859..>2040)
                     /locus_tag="VLL95_11955"
     CDS             complement(1859..>2040)
                     /locus_tag="VLL95_11955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39621.1"
                     /translation="LLSAGLHAMDGLRWFMGGKIVEVTQYATEMRGPEFAEYEYAPTA
                     NSWWPPMAARSGSCQ"
BASE COUNT          445 a          548 c          483 g          564 t
ORIGIN      
        1 cccaccaggt acattttgat gtactgggta tggtaatact tgctgtactg cttcagtaca
       61 ttcttggttt gctcatagct ctgcaggttg tacatccagt agcctacgcc agggccggta
      121 ctatacaccc gtggaccagg catcatgccg gcatccacca tatcactgta agtcagcaca
      181 tcggtggtgg ctgtttgggg atcgcgggtg gtggttacac catacgccag gttggcggca
      241 tagatccaga tggtattctt gtgcaaaccc cattgaggcc acatgtgcga atgcgtgtct
      301 acaaaactag gcgtcagtgt tttgccggtg cagtcaattt ccttagtgcc tgccggtact
      361 tgcagcgtgc ctgttttgcc aatcgctttt attcgattgt tcacaatcaa aacatcaccg
      421 ttctcaatca cctcatctcc cttcatggtc acgatgcgtg cattcttcaa caggatggtg
      481 ccattgggca tatccttggc gtaatacact ttcacctgcg tttcttctgc cgtatatttt
      541 tccttctttt tttgctccac tttggcaatg ctgtcagcac gggctttggc agtatcagcc
      601 ttgtacaaag cagtcaaaga gtccttggct tttttggcca ggctgtcggc cagttttttg
      661 gcttcaggtc ctttggccat caaagccttg atgctgtccg ctgctttggc tgcatcggcc
      721 ttcttcacct gcttcataga atcctccaca aatttggcac gggctacatc gtatacccag
      781 tgaccattgc ccaggctcca gtgtactttt ttaccatctt cttcccagaa gggccattca
      841 ccaccaatct ccgtcaactg ccgggcaggg aaactgctgg cagagggttc tcccacattg
      901 atgttgggta ctttgcccac ttcgggaata gtaacaacgt acacattgtt atttacctgt
      961 gctaccgcca tattgccaac gggggccata aaaatggtac cggcaggcgt aggcatttgc
     1021 tgcggttctt tcatactggc gccctcagga agcatgcagt agtttacagg atcagcagtt
     1081 gacatgggtt ttcccatcac gtatttaata ccgggcattg cctgatcagt tgtcggcaac
     1141 tcgctggtat ggccatgttt gctgtgatca tcagcatcgg ctacagaacc aaaagtggta
     1201 atacccgtaa tgcgggcata tactttttca tccaggcctt cccagttcac gctcaacagt
     1261 gtgccgccgg ggccgttcag gaaaatacgg gaagtatctt tggtgaaatg cacattgccc
     1321 ttgtcgctgg ttactttgat cttcgtcatg gcaccacctg ctgcaggcat ccagaacaat
     1381 tcggcttctg atccatcgta gaacggactt tcagaatctt tgaacaaacg cttcgaggcc
     1441 ttccaaatgg taatgcgatt attgaaactc caggccggct gcatatagaa tgccgcctcc
     1501 gatgaaagtt tggttaacgt ggtttttcct gacaggtttg ctttatacaa attgccccct
     1561 tctttttcat cccatgtcac aaatgcgagt tgggttccgt cagggctcca ggctggcatg
     1621 gcttccacaa aatcatggtt ggaaactctc ctgggagaac cgttgggata gtccataacg
     1681 tacaaacgat tcagcacggt aaaagccagc ttctttccat caggcgatgg taccgcatcg
     1741 cgtatttgcg tagccagggc atgagaagta tccttcaccg ggtaattgaa atagagacga
     1801 ggtcccattt caagcctcac atccacattg aaagcaattt cctgtgctga ggaaccatct
     1861 actggcaact tccagatctt gccgccatag gaggccacca ggaatttgct gtcggcgcat
     1921 actcatactc ggcaaactcg gggccgcgca tttcggtggc gtactgggtc acttccacaa
     1981 tcttcccgcc catgaaccag cgcagcccgt ccatcgcgtg cagcccggct gaaagcagcg
//
LOCUS       DATIQF010000703         3011 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_300081,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000703 DATIQF010000000
VERSION     DATIQF010000703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3011
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300081"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..215
                     /locus_tag="VLL95_11960"
     CDS             <1..215
                     /locus_tag="VLL95_11960"
                     /inference="COORDINATES: protein motif:HMM:NF013073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HSR39622.1"
                     /translation="VGFLQEAVPGDLAFFDNAEGRITHVGILLNEKEIIHASGVVRVD
                     PIDNHGIMNKQSGKRTHNLRIIKRFF"
     gene            complement(312..860)
                     /locus_tag="VLL95_11965"
     CDS             complement(312..860)
                     /locus_tag="VLL95_11965"
                     /inference="COORDINATES: protein motif:HMM:NF012922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HSR39623.1"
                     /translation="MTNNLQVHHPWHGVHYGDGAPRNVNAIIEIPQGSRAKYEIDKES
                     GLLKLDRVIYSSFYYPTNYGFIPRTYGDDKDPLDILVLSSISVQPLCIIEAKVIGVMQ
                     MIDGGDADDKIIAVAAHDMSVNHINNIEELPPHFFKELRQFFEDYKKLENKTVQVEDF
                     GDKATALQIISAGIAHYQEKFG"
     gene            complement(1006..1359)
                     /locus_tag="VLL95_11970"
     CDS             complement(1006..1359)
                     /locus_tag="VLL95_11970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39624.1"
                     /translation="MSRTYSILIVLLATLLLACTSYEEPDSGIDCGRQFINATYQGNF
                     KRAKQLLLAGQEQEELLESRIEKEFRSKDSNGREALSKSSIVVRNIEQQGDSVLYISY
                     LNAYDNQERKLRVVN"
     gene            1474..>3011
                     /locus_tag="VLL95_11975"
     CDS             1474..>3011
                     /locus_tag="VLL95_11975"
                     /inference="COORDINATES: protein motif:HMM:NF014731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
                     /protein_id="HSR39625.1"
                     /translation="MFVKAESPSPVSNNHINKVSAAGLLVALGIIYGDIGTSPLYVLN
                     AIINNKEISELLIIGGLSCIIWTLTLQTTVKYVILTLQADNRGEGGIFSLYTLVRRRK
                     RWLVLPAMIGGSALLADGMITPPISITSAVEGLRQIPAFASLQHDQQTIIYIVIGIIS
                     LIFFLQQFGTASIGKMFGPLMSVWFLMLAILGLMHIADDWSVFKAFNPYYAIKLLATY
                     PKGFWILGAVFLCTTGAEALYSDLGHCGKNNIRTSWIFVKLCLIINYLGQGAWLMSHY
                     SGKVFPTEMSNPFYGLMPQGFLIFGVAIATMAAIIASQALISGSFTLISEAMRLNLWP
                     KHKIDYPTETRGQLFITATNLLLFLGCVAMVLIFKKSTNMEGAYGLAITMCMIATTIL
                     FANYLVLKRVHPILIWLFLGTYFLIEGSFLYANLEKFPHGGYVTFIVGGALFLIMYIW
                     YRARKIKNRYVEFVRLENYIPQLQELSNDKSVPKYATHLIYLTSANNPKEIEHKIIYS
                     ILNR"
BASE COUNT          732 a          726 c          715 g          838 t
ORIGIN      
        1 tagtgggctt tttgcaggaa gcagtgcccg gcgacctggc cttcttcgac aacgcagagg
       61 gccgcatcac ccatgtgggc atcctgctga acgaaaagga gatcattcat gcatcgggtg
      121 tggtgcgggt agatcctatc gataaccacg gcatcatgaa caaacaaagc ggcaagcgaa
      181 cgcataacct gcgcatcatc aagcggtttt tctgaagcag gctgatggat gcggaaatag
      241 ggcgtggccc aaaacaaaac cggggacgat acgtgtaagc atcgtccccg gcaactttta
      301 tagatcagtt cttacccgaa tttttcctgg taatgcgcaa tgccggcact gatgatctgc
      361 agggctgttg ctttgtcgcc aaagtcttcc acctgcaccg ttttgttttc cagtttttta
      421 tagtcctcga aaaactggcg cagttccttg aagaagtgag gaggcagttc ttcgatgttg
      481 ttgatatggt tcacactcat gtcgtgggcc gctaccgcaa tgatcttgtc atccgcatcg
      541 ccgccatcta tcatctgcat cacgccaatc accttggctt caatgatgca aagcggttgc
      601 acactgatgc tgctcaaaac caggatatcg aggggatcct tatcatcgcc gtaggtgcgg
      661 ggaatgaacc cgtagttggt agggtagtaa aaggacgaat aaattaccct gtccaatttg
      721 agcagcccgc tttccttgtc tatttcgtat ttggcccttg atccttgggg tatctcaata
      781 atcgcattca cgttgcgggg ggcgccatcg ccataatgta cgccgtgcca ggggtgatgc
      841 acttgaaggt tgttggtcat attaatagat tgcttttttg gtggagaggc tgcaaattag
      901 cccaaaagat aatggttgcc tgtgcaaatc cttccgctaa tattgccggc cagtgaaaac
      961 tggttacctg aaggaatagg ccaggtcggt tttccagcca tcggctcagt ttaccacacg
     1021 gagctttcgc tcctggttgt cataggcatt gaggtaactg atgtaaagaa cagaatcgcc
     1081 ttgctgctca atattgcgca ccacgataga ggatttggaa agcgcctccc tgccattgct
     1141 gtcttttgac cggaattcct tttcaatccg cgattcaagc agttcttctt gttcctggcc
     1201 ggccagcagc agttgcttcg cccttttgaa attaccctgg taggtggcat tgatgaactg
     1261 gcggccacaa tcgatgccgg agtcgggctc ttcgtaagaa gtgcaggcca aaaggagagt
     1321 ggcgagtaaa acgatgagta ttgaataagt acgtgacatc cttgtttttt ggagttgcga
     1381 aggtagttta ttggcatcag cgccgtagca ttttgaaacg ggtgaaaaaa gccgcttaca
     1441 aacaaggtca tgtagcttca aaccacccta catttgttcg ttaaagcaga atctccatca
     1501 cccgtgagca acaatcatat taacaaagta tcagcagccg gcctcttggt ggcactggga
     1561 attatctacg gcgacatcgg tacttctcca ctttacgtac tcaatgctat aatcaataac
     1621 aaggagataa gcgaactctt gattattggt ggtttaagtt gcattatctg gacgctgacg
     1681 cttcaaacca ccgttaagta tgtgatcctg accctgcagg ccgacaacag gggggaaggt
     1741 ggaatttttt cgctgtatac acttgtccgg cgtcggaaac gctggttggt attgccagcc
     1801 atgattggcg gctctgcctt gctggcagat ggtatgatta ccccacctat ctccatcacc
     1861 tcggcagtgg aaggtttgcg acagataccg gcttttgcct cattgcagca cgatcagcaa
     1921 accattatct atatcgtcat tggcatcatc tcactcatct ttttcctgca gcaattcggt
     1981 actgcctcta tcgggaaaat gtttggacca ttgatgagtg tatggtttct tatgctggcc
     2041 attcttggcc tgatgcatat tgcggatgat tggtcagtat tcaaagcatt caacccgtat
     2101 tatgcgatca agttgctggc cacttacccc aaaggttttt ggattttagg agctgtcttc
     2161 ctgtgtacaa caggggcgga ggcattgtat agtgaccttg gacactgcgg aaaaaacaac
     2221 atccgcactt cctggatttt tgtaaagctc tgccttatta tcaactacct ggggcagggt
     2281 gcgtggctca tgtctcatta ttctggtaag gtattcccaa ccgaaatgag caaccctttc
     2341 tatggtttga tgccacaagg cttcctgatt tttggagtag ccattgctac catggctgcc
     2401 attatcgcaa gccaggcact catttcaggc tctttcacgc ttatcagtga ggccatgcgc
     2461 ctcaaccttt ggcctaaaca caagattgac tatcccactg aaaccagggg ccagcttttc
     2521 ataactgcca ccaatctttt actgttcctg ggttgtgtgg ccatggtgct catttttaag
     2581 aagagtacca atatggaagg ggcttatggc ctggccatca ctatgtgtat gattgccacc
     2641 accatactct ttgccaacta cctcgtgtta aaaagggtac accccatact tatctggctt
     2701 ttcctgggca cttatttcct tattgaagga tcattcctgt acgctaacct ggagaaattc
     2761 ccccatggtg gttacgttac ttttattgtg ggcggtgcac tgtttctaat catgtacata
     2821 tggtaccgtg cccggaagat caagaaccgc tatgtggaat ttgtacgcct cgaaaattat
     2881 attccacagt tgcaggagct cagtaatgat aagagtgtcc ccaaatatgc aacgcatctt
     2941 atctacctca ccagtgctaa caaccccaaa gaaattgagc acaagatcat ttactccatt
     3001 ctcaaccgta a
//
LOCUS       DATIQF010000704         2436 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_56847, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000704 DATIQF010000000
VERSION     DATIQF010000704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2436
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56847"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..876
                     /locus_tag="VLL95_11980"
     CDS             <1..876
                     /locus_tag="VLL95_11980"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006222 - UMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HSR39626.1"
                     /translation="AGFDKNALYLDELELLGFGFVEIGTVTPRPQDGNEKPRLFRLPE
                     DKALINRMGFNNDGADVIAERLKIWRERQASDKQVLMNANQAGRFIVGGNIGKNKTTP
                     NDYAYMDYDICFRKLAPYVDYFVVNVSSPNTPGLRELQEKEALRKILTHLQALRLETG
                     CQLPILLKIAPDLTNEQLDDVASLAIEIKLDGLVATNTTIERSMLSDAGKIRAGEIGA
                     GGLSGAPVKARSNEVLQYLQQKLNGALPVIASGGVFTAQDAREKMQLGAPLVQVWTGF
                     VYEGPGIVKNILKGL"
     gene            982..1782
                     /locus_tag="VLL95_11985"
     CDS             982..1782
                     /locus_tag="VLL95_11985"
                     /inference="COORDINATES: protein motif:HMM:NF015686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HSR39627.1"
                     /translation="MEYLFTSEALISFVILVILEVVLGIDNVIFVSLILNRLPDEKRK
                     RARTFWMVFGIITRSLLLLALGWLLKQKGKHLFVISDKGFDLASIVMLLGGLFLMYKS
                     VKEIHHKLEGEDPEASMKNQALLTFGQAMVQIILIDMVFSFDSIITAGGTAKHVEIMI
                     AAVVIAMMVMFFFAPKIADFIHEHPTIKMLALSFLVMIGLSLVIEGWDSESAHDLHLK
                     NYIYFGMAFSFAVEMLNMLMRKRMQKRVVRLNEPSLHTGQIPDSDQAR"
     gene            complement(1794..>2436)
                     /locus_tag="VLL95_11990"
     CDS             complement(1794..>2436)
                     /locus_tag="VLL95_11990"
                     /inference="COORDINATES: protein motif:HMM:TIGR00046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HSR39628.1"
                     /translation="AVQVLRMQEGDSMLLTDGKGQLCEGKMAQVQKKKCLVQLNHCQL
                     ISRKVERKVAIGISPLKNASRFEWFLEKATELGVAEIFPLLCHRTVRSHFRIDRMQSI
                     CVSAMLQSQQAWLPVLHAPLPYHELMQRMEQLHYHHRWIAHCSDLEKHHLSKVLQPGM
                     TDSLMLIGPEGDFTNEEIVLAETHNFSAVALGDTRLRTETAGVAAAALLCLMS"
BASE COUNT          598 a          561 c          651 g          626 t
ORIGIN      
        1 gctggtttcg ataagaatgc tttgtacctg gatgaactgg agctgctggg ctttggattt
       61 gtagaaattg gaaccgtaac tccacggccg caggacggca atgaaaaacc acgattgttc
      121 cgcctgccgg aggacaaggc acttattaac cggatgggct ttaataacga tggggccgat
      181 gtgattgcgg aaagattaaa aatttggaga gagcggcagg caagcgacaa acaggtttta
      241 atgaatgcaa atcaagcagg ccggttcatc gttggcggca atattgggaa gaacaaaacc
      301 acgcccaatg actatgccta tatggactac gacatctgct ttcggaagct ggcaccatat
      361 gtcgactatt ttgtagtgaa cgtgagcagc cccaacacgc ccggtttgcg tgaactgcag
      421 gaaaaggaag ccctgcgcaa gatcctgacc catttgcagg cgttgaggct tgagaccggg
      481 tgccagttgc ccatcctcct gaaaatagcc ccggacctga ccaatgagca gttggatgat
      541 gttgcatcgc tggcaattga aataaaactg gatggattgg tagctaccaa caccaccatt
      601 gaacgctcca tgctgtctga tgccgggaag ataagggcgg gcgaaattgg tgccggcggt
      661 ttgagcggtg cccctgtaaa agcgaggagc aatgaagtgt tgcaatacct gcagcaaaag
      721 ctgaatgggg cattgcctgt tattgcatcg ggcggcgtgt tcactgcgca ggatgcccgg
      781 gaaaaaatgc aattgggcgc accactggtg caggtgtgga ctggctttgt atatgaaggc
      841 cccggcattg ttaagaatat tttgaaagga ctctgaccta ttttgcggcg gcattttgaa
      901 gccgaaaaag ctggcaggtg tttgtaaact tttcaattac tgactaattc actcattgac
      961 tcattgacta attgactgca aatggaatat ctctttacct ctgaagccct catcagtttt
     1021 gttatccttg ttattctcga agtggtattg ggcattgata atgtcatttt cgtaagcctg
     1081 atactgaacc ggcttcccga tgaaaaaaga aagcgggccc gcactttctg gatggtcttt
     1141 ggcatcatca cccgcagttt gttgctgctg gcactgggat ggctgctgaa gcaaaaaggc
     1201 aagcatttgt ttgtgatcag cgacaagggt ttcgacctgg caagtattgt tatgctgctg
     1261 ggtggtttgt tcctgatgta caaatcggtg aaggaaatac accacaaact ggaaggtgaa
     1321 gatccggaag ccagcatgaa aaaccaggca ctgcttacat ttggccaggc catggtccag
     1381 atcattctga ttgacatggt gttttctttc gacagcatta tcacggcagg cggtaccgcc
     1441 aagcatgtgg aaataatgat tgcggcagta gtgattgcca tgatggtcat gttctttttt
     1501 gcaccaaaga ttgccgactt catccatgag catcccacca tcaaaatgct ggcgctttca
     1561 ttcctcgtca tgattggatt gagcctggtg attgaaggct gggacagtga atcggcccat
     1621 gatttgcatt tgaaaaacta tatctatttc ggtatggcat tttcctttgc cgtggaaatg
     1681 ctgaacatgc taatgcgcaa acgcatgcag aagcgggtgg tgcggttgaa tgaaccctcg
     1741 ctgcataccg ggcaaattcc cgatagcgac caggcgcgtt aaggccttcg aaactaactc
     1801 atcaggcaca acagtgcagc ggctgccaca cctgcggttt cggtgcgcag gcgggtatcg
     1861 cccagggcta cggcactgaa gttgtgggtt tcggccagta cgatttcttc gttggtaaaa
     1921 tctccttcag ggcctatgag catcaggctg tccgtcatgc cgggctgcag tactttgctg
     1981 agatgatgtt tttccaaatc gctgcaatgg gctatccagc gatggtggta gtgcaactgc
     2041 tccatgcgtt gcatcagttc gtggtagggc agcggtgcat gcaacacagg caaccaggcc
     2101 tgctggcttt gcaacatagc gcttacgcaa atggattgca ttctgtctat gcgaaaatgg
     2161 ctgcgcaccg tacgatgaca gagcaaggga aagatttcgg ccacacctaa ttcggtggct
     2221 ttttccaaaa accattcaaa gcggctggca tttttcaatg gcgaaatgcc gatggccact
     2281 ttgcgttcca cttttctcga aatgagttgg cagtggttga gttgcaccag gcatttcttt
     2341 ttctgcacct gcgccatttt gccttcgcac agttgtcctt ttccatcagt caacagcatt
     2401 gagtcacctt cctgcatgcg cagtacctgc accgca
//
LOCUS       DATIQF010000705         5042 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_224125,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000705 DATIQF010000000
VERSION     DATIQF010000705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5042
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224125"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..258)
                     /locus_tag="VLL95_11995"
     CDS             complement(<1..258)
                     /locus_tag="VLL95_11995"
                     /inference="COORDINATES: protein motif:HMM:NF013132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HSR39629.1"
                     /translation="MRKQSIWLLISFAVFCLLLLANPFALEAKAQKAVACAALMVMLW
                     VSEALPMPVVALMPLVLFPLLGIADTAETAAPFANPVIFLFM"
     gene            486..2363
                     /locus_tag="VLL95_12000"
     CDS             486..2363
                     /locus_tag="VLL95_12000"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 domain-containing protein"
                     /protein_id="HSR39630.1"
                     /translation="MPGIRQISYELLKMKDCDFDSGAAAMVVFHSAETFYDGDNGNMI
                     TKHRKRIKIFNKNGMGQANFLIRFYSKEGFEFIGEIEGESCTLDANGKPVFSEIAKES
                     IFRESIDPFWSQMKVMVPNVVEGSVFEIRYTSTMKHYGGLDYWDFQETIPTVKSSYLL
                     EIPPGAEFAYSVQKAEGLSFNIEPMPREGKIYFEMSNVPGLTYEPYMDAPRNYLQRVI
                     FQLASYQGVYGGKNKVNNTWEDLVRDLMSHEDFGKQLNKKLSVPELDEAVIMQKSTED
                     KVRLIYNYVRKKVQWDHYYGKYSIQGVKTTLEKGVGSTADINLLLLNLLQQYEITCYP
                     LLVADRDFGKVNVNYPFIDKFSKVVAYALVDSSKKAWIMDASQKEMPANLTPYQLLNT
                     IALVVDKKKPILIRIVRPGDRFQKYVTIESTLDTDRNEIVSKVKIERHGYAKLTEGGR
                     ANGQFSNPIADVDEEKMSIMEVVSSTKQPAEEENAPNVHLMTLRDELPDQLGTLYLNS
                     TMFLGIGKNPFNSSKRFSDVNFGYPISLFQVERVKLPAGTKLKEPWNEKTLAYTDNSI
                     VFNRKVELNDNVLIIKTNFQQTVTLVPAKEYDNLRNFYANMLKVLELPVVLQLPVAAA
                     Q"
     gene            2414..2500
                     /locus_tag="VLL95_12005"
     tRNA            2414..2500
                     /locus_tag="VLL95_12005"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2448..2450,aa:Ser,seq:gga)
     gene            2807..3244
                     /locus_tag="VLL95_12010"
     CDS             2807..3244
                     /locus_tag="VLL95_12010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39631.1"
                     /translation="MRAFLYLMPFLLLAFAILLPSVLWDSDLSVWPQLAFVVITLLCI
                     YLLLRAEVVLEIMITPAEIRQRYVSKLGTRHRLIKVEDVKCIMLEKIYLRSRGYYYTL
                     SMKDGSRKTLFSLPRFSMDPEEEADIKHQLQQCTGLTVEKFTL"
     gene            complement(3239..4099)
                     /locus_tag="VLL95_12015"
     CDS             complement(3239..4099)
                     /locus_tag="VLL95_12015"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSR39632.1"
                     /translation="MKIIPFTIPVPTGSSVHIQHEKLAHFYEHLHQHREVQITLVVKG
                     TGSLLASNQLHPFSSGDLFLIGANVPHVFKSDPSYFRNTQPNAVEAWTIFFDPSGALH
                     PLFSLPEMLAIRKWLSKFAGGIKWKNQATKIHLPLLQNAMQSNGADRLAALVTLLRKL
                     SVSKHSIPLTQMPANLNETEGQRMNAIMQYSTRHFAETVTIEDVARIAHMTPQAFCRY
                     FKKHTRKTYINFLNEIRVHESCRLLQEKGMGNMAAIAWECGFNNVPNFNRVFRKVMQC
                     TPGDFLQSQS"
     gene            4230..>5042
                     /locus_tag="VLL95_12020"
     CDS             4230..>5042
                     /locus_tag="VLL95_12020"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HSR39633.1"
                     /translation="MQPQWKGVYPAITTKFKPDDSLDMELFLHNIDVQVKAGADGIII
                     GGSLGEASTITEAEKEILVKETVKGFGAKVPVLLNIAEGSTAEAVRQAKLAEAWGANG
                     LMLLPPMRYKSDDRETVVHFTTVATNTGLPIMIYNNTVDYKIDTTPDMFEELLKHENI
                     QAVKESTRDITNVTRLTNRFGNRLKILCGVDTLAMEELVMGADGWVAGLVCAFPAETV
                     CIYRLVKAGRVAEALPIYRWFMPLLELDIHPKLVQYIKLCEAKTGIGSEYVRA"
BASE COUNT         1396 a         1088 c         1275 g         1283 t
ORIGIN      
        1 catgaaaaga aaaatgaccg ggttggcaaa gggggctgct gtttcagcag tatcggcaat
       61 gcccagcaat ggaaaaagta ccagcggcat taaagctact actggcattg gcaaagcttc
      121 gctcacccac agcattacca ttaacgcagc acaggccact gctttttggg cctttgcctc
      181 caatgcaaag ggatttgcga ggagcaagag gcaaaaaact gcaaaactga tcagcaacca
      241 gattgattgt tttctcatcg ttcagattgg ggcaattaag ggaaaaaaga tagtcagaat
      301 taaattaata atcataaggg gcctgtaaat aaataggtca gccccccact ataaaaatac
      361 tgaagggtat catttttata tttagcccgt taccctttat ttgcagtatg ctggtacaca
      421 ctttagcccg ttatttctca gtattacttt tgtttgtccc ttttcatctg tttgcaaaag
      481 atgaattgcc tggtattcgc cagatcagtt acgagctgtt gaaaatgaag gattgtgatt
      541 ttgattcagg ggcggcagcc atggtcgttt ttcattccgc cgaaacattt tatgacggag
      601 acaatggcaa catgatcacc aagcaccgca agcgaatcaa aatattcaac aagaatggaa
      661 tgggccaggc caattttctt attcgtttct attccaaaga agggtttgaa ttcatcggcg
      721 agattgaagg cgaaagttgc acactcgatg ccaatgggaa acccgtattc agtgagatcg
      781 caaaagagtc aatttttcgg gagtcaatcg atcctttttg gtcgcaaatg aaagtgatgg
      841 tgccaaatgt ggttgaaggc agcgtgtttg aaatacgata taccagcacc atgaagcatt
      901 atggcgggct cgactactgg gacttccagg aaaccatacc aactgtcaaa agctcctatt
      961 tgctggaaat accgccgggc gcagaatttg cctatagtgt gcaaaaagcg gaaggacttt
     1021 ccttcaatat tgaaccgatg cccagggagg gaaagatcta ttttgaaatg agcaatgttc
     1081 ccgggctgac ctatgagcct tacatggatg cccccaggaa ttatttgcaa cgggtaattt
     1141 ttcaattggc atcctaccag ggtgtttatg gtggcaagaa caaggtgaac aatacctggg
     1201 aagacctggt gcgtgatttg atgagccacg aagattttgg aaaacaattg aacaagaaac
     1261 tatctgtgcc tgaattggac gaagccgtca tcatgcaaaa aagtacggaa gataaagtgc
     1321 ggctgatcta caactatgtt cgaaaaaagg tacaatggga tcactattac ggtaagtatt
     1381 caatccaggg ggtaaagaca actctcgaaa aaggggtagg cagcacagct gatatcaatc
     1441 ttttgttgtt gaatttgctg cagcaatatg aaatcacctg ctatccattg ctcgttgccg
     1501 atcgtgattt tggcaaagtg aatgtcaact atccgtttat tgacaagttc agcaaggtgg
     1561 tggcctatgc gttggtggat agcagtaaga aagcctggat aatggacgcc tctcaaaagg
     1621 aaatgcctgc caatctcact ccctaccaat tgctgaatac gatagcgctg gtggttgaca
     1681 aaaagaaacc catactgatc cgcattgtga ggccgggcga caggtttcag aaatacgtta
     1741 cgattgagtc cactctggat acagacagaa acgagatagt cagcaaagtg aaaattgaaa
     1801 ggcatgggta tgccaaacta actgaaggag ggagggcaaa tggacagttt tcaaacccta
     1861 ttgcggatgt ggatgaggaa aagatgtcaa tcatggaagt ggtttcatca accaaacaac
     1921 cagcagagga ggagaatgcg cccaatgtgc atttgatgac actccgggat gaactgcctg
     1981 atcagttggg aaccttgtac ctgaatagta cgatgttcct gggtattggg aaaaatccat
     2041 tcaatagttc caaacgattt tcggatgtca attttggata tcccatctca cttttccagg
     2101 tggaaagggt gaaactgcca gccggaacga aactcaaaga gccatggaat gagaaaacgc
     2161 tggcttatac tgataattca atcgttttca acagaaaggt agagctcaac gataacgttt
     2221 tgatcatcaa aaccaatttt cagcaaacgg tgacgctggt gccggcaaag gaatacgata
     2281 acctcagaaa cttctacgcc aatatgctta aagtattgga gttgcctgta gtgctccaat
     2341 tgcctgtggc ggctgcccaa taaaaaatca ctttttgggt tgcctcctta ccattagatt
     2401 tgccgcccca aacagagagg tgcccgagtg gttgaagggg ctcgcctgga aagcgggtat
     2461 acgggagact gtatcgaggg ttcgaatccc ttcctctctg caaagcatcg caaagccccg
     2521 aaaggggctt ttttaattga tgcagcgtgc aaagcttgct ttgcaaagcg aaatcaatta
     2581 aaaaagcatg gcacgcagtg ccggctttgt gatgctttgg catccccctt catgggatcg
     2641 ccgtgaggca atcccatagc agcgtgcaaa gcttgctttg cctgacatag gtatcgcctg
     2701 ttatttttca tagcttcagc caatgaatgt tttcaggccg tataacacct tgcatgctgg
     2761 ccccgaccta attcacctgc agcaacctcc cttgcgaaaa ttctttgtgc gtgcctttct
     2821 gtatctcatg ccgtttttac tgctggcatt tgccatttta ctcccttcgg tgttgtggga
     2881 cagcgatttg tctgtttggc cccagttggc ttttgtggtg attacgctgc tttgcattta
     2941 cctgctgctg cgggcagagg tcgtgctgga aataatgatc acccctgctg agataagaca
     3001 gcgatatgta tcaaaactgg gaaccaggca ccggctgatc aaagtggagg atgtgaaatg
     3061 catcatgctt gaaaagatct atttgcgatc ccgcggttat tattacaccc tcagcatgaa
     3121 agatggttca aggaaaaccc tgttcagttt gcccaggttt tcgatggatc cggaagaaga
     3181 agcggacatc aaacatcagt tgcagcaatg cacagggttg acggttgaaa agttcacctt
     3241 atgactggct ttgcaggaaa tcccccggcg tgcactgcat taccttgcga aagacccggt
     3301 tgaaattggg aacattgttg aagccacatt cccaggcaat ggcggccata ttgcccatgc
     3361 ctttttcctg cagcagccgg cagctttcat gcacccttat ttcgttcaga aagttgatat
     3421 aggttttgcg ggtatgtttc ttgaagtacc ggcaaaatgc ctgtggcgtc atgtgggcaa
     3481 tcctggcaac atcttcaatg gtgacggttt cggcaaaatg ccgggtgctg tattgcatga
     3541 tggcattcat gcgttgtcct tctgtttcgt tgaggttggc aggcatttgg gtgagcggta
     3601 tggaatgctt gctcacggag agttttcgaa gcaatgttac cagggcagcg agacggtctg
     3661 cgccattgct ttgcattgcg ttttgcaaca aaggcaaatg gatttttgta gcctggtttt
     3721 tccatttaat accgccggcg aatttgctga gccacttgcg gatggcaagc atttcaggca
     3781 atgaaaaaag gggatgcagg gcgccggaag gatcaaaaaa aatggtccag gcttcaacag
     3841 cgttgggctg ggtattcctg aaataagacg gatccgattt gaatacgtgg ggcacattgg
     3901 cgccaatcag aaaaagatcg ccgctgctga aggggtgcaa ctggttggat gccagcaaac
     3961 tgccggttcc ctttaccacc agggtgatct gcacttcgcg gtgctgatgc aggtgctcat
     4021 aaaagtgcgc cagtttttca tgctgaatat gcaccgaaga gccggtgggc accggtatgg
     4081 taaatggaat gatcttcatg gttggccaat attaccccaa aaatcgttaa gccaactgat
     4141 ttcggttaaa atcggttaat gtttgggtag ttgcggtaaa gccattctgc ttcggtaagg
     4201 atagttttgg gttcgtaaaa accaatcgta tgcaaccaca atggaaagga gtatatcctg
     4261 cgatcactac caaattcaaa cccgatgatt ctcttgatat ggaactgttc ctgcacaata
     4321 tagatgtgca ggtaaaggca ggtgccgacg gcatcatcat tggcggttca cttggcgagg
     4381 ccagcaccat tacagaggct gaaaaggaaa tactggtaaa agaaacggtg aaaggctttg
     4441 gagccaaagt accggtatta ctgaacattg cagaaggctc taccgccgaa gccgtgcgcc
     4501 aggccaaact ggcggaggcc tggggtgcca acgggctgat gctgctgccg cctatgcgct
     4561 acaaaagcga cgaccgcgaa acggtggttc attttaccac agtggccaca aataccggcc
     4621 tgcccatcat gatctacaac aacacggttg attacaaaat tgacacgaca cccgacatgt
     4681 ttgaagagtt gctgaaacat gaaaatatac aggcggtgaa agaatcaacc cgcgacatta
     4741 ccaatgtcac aaggcttacc aatcgctttg gcaaccggtt gaaaattctg tgtggtgtgg
     4801 atacactggc catggaagaa ttggtaatgg gagccgatgg ctgggtagcg ggtttggtat
     4861 gcgcctttcc ggccgaaaca gtatgcattt atcgcctcgt aaaagctggt cgcgtagcgg
     4921 aagccttgcc catttaccgt tggttcatgc cactgctgga actggatatt catcccaagt
     4981 tggtgcaata catcaaactg tgcgaagcaa aaaccggcat tggcagtgag tatgttcgtg
     5041 cc
//
LOCUS       DATIQF010000706        10186 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_193600,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000706 DATIQF010000000
VERSION     DATIQF010000706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 10186)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10186)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10186
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193600"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..894)
                     /locus_tag="VLL95_12025"
     CDS             complement(<1..894)
                     /locus_tag="VLL95_12025"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR39634.1"
                     /translation="MNNKLVLWSLTVALGGFLFGLDVAVISGAEQTIQQLWSLSDAMH
                     GLAISIALYGTVIGAATGGFFADRMGRKRSLFWVGLFFLVSSVGSALANDVYSFMIFR
                     LLGGFSIGASSVIAPLYISEIAPPKKRGWLVALFQFNIVFGIMVAYVSNYLFQGSGNP
                     NDWRWMLGIVGIPSLIFTLLTLAISESPRWLALHRNNYAEALQVLKQIDPDTAEATLQ
                     SILAHKQQSDQQPTHRFFSKQYRWPILLAFLLAFFNQASGINAIIYYAPRVFEMAGLA
                     KSSAFLSSTGIGLVNLIFTMVG"
     gene            complement(1003..2133)
                     /locus_tag="VLL95_12030"
     CDS             complement(1003..2133)
                     /locus_tag="VLL95_12030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39635.1"
                     /translation="MSKPAAQRFLALDVFRGMTVCFMIIVNTPGNYDTTFAPLLHAQW
                     HGFTPTDLVFPSFLFAVGNAMSFVMPKWEGMATSAVVTKILKRTFIIFLLGFLMYWFP
                     FMKQVNGQLVLFPFEETRVFGVLQRIALCYGIAALMLYFLKPKTTYWLAAGGLLLYWG
                     LLYWMAPAGVDPLSMEQNAVLHLDKWLIGEKHMYHGEGIAFDPEGLLSTLPAISNVVI
                     GFAAGKFIREKGNSYETLAKLLLAGFALLVMAYFWNLEFPINKKLWTSSFVLHTVGLD
                     LMIIAGIMYVVDFAGRTRWTYFFEVFGKNPLFIYLLSELLAILMWFFQAADGQPYYSW
                     IYQNIFSHFGGYLGSLLFALTVMMTCWLVGYGLDKRKIYVRV"
     gene            complement(2165..2500)
                     /locus_tag="VLL95_12035"
     CDS             complement(2165..2500)
                     /locus_tag="VLL95_12035"
                     /inference="COORDINATES: protein motif:HMM:NF015758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphohydrolase"
                     /protein_id="HSR39636.1"
                     /translation="MNELTLKQAQEQVDQWIKTVGVRYFNELTNLGILMEEVGELSRL
                     MVRMYGEQSFKESDKGKELSDEMADVLWVLICLANQTGVDLAEALQKNFNKKNIRDSN
                     RHRDNEKLQ"
     gene            complement(2502..2957)
                     /gene="dtd"
                     /locus_tag="VLL95_12040"
     CDS             complement(2502..2957)
                     /gene="dtd"
                     /locus_tag="VLL95_12040"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: protein motif:HMM:TIGR00256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HSR39637.1"
                     /translation="MRAVIQRATEASVTVEGKINGAINNGLLVLVGIEDTDTTEDITW
                     LSNKIVNLRIFDDEQKVPNISVKDMGGDILLVSQFTLHAATKKGNRPSYIRASKPDIA
                     IPIYEQFIQQLQADLGKPIQTGIFGADMKVRLLNDGPVTIIIDTKNKDF"
     gene            3041..3670
                     /gene="yihA"
                     /locus_tag="VLL95_12045"
     CDS             3041..3670
                     /gene="yihA"
                     /locus_tag="VLL95_12045"
                     /inference="COORDINATES: protein motif:HMM:TIGR03598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HSR39638.1"
                     /translation="MEIIKAEYLISKPDVAQCPQGDRPEFAFIGRSNVGKSSLINMVC
                     GNQKLAKTSASPGKTQLINHFMVTSRSGHYSKTSTQWYLVDLPGYGYAKVSQKNRKQW
                     GKMIEDYLRKRDNLLTTFVLIDGRHEPQKIDIEFVNQMGAWELPLALVFTKADKMKPG
                     GLQRNVNLFADELRKNWEALPAMFITSAETAQGKPEVLDYINGIIKSVS"
     gene            3709..4155
                     /locus_tag="VLL95_12050"
     CDS             3709..4155
                     /locus_tag="VLL95_12050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39639.1"
                     /translation="MKHFLLYGICLLFTANSLLAQNFEPAPGPVEDKIKLLIKRYGTG
                     ERIYLNDTQRQTFDARGGSIYVVGFVYTPASKGTRRMMVYEMGPNNEKKNLKYPDFSK
                     GYRGPLGQLFSVKLLPEGDENTITTYKIDADDEAQVYIFKVVPGVK"
     gene            complement(4204..4677)
                     /locus_tag="VLL95_12055"
     CDS             complement(4204..4677)
                     /locus_tag="VLL95_12055"
                     /inference="COORDINATES: protein motif:HMM:NF016215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease H-like YkuK family protein"
                     /protein_id="HSR39640.1"
                     /translation="MRWRKFNGDPISLPIKAAVEDAIKREAEAGNRLKVCIGTDSQVK
                     GKETEFATVIVFLRERAGGFMFIHNERTTQKFSIKERMLVEVAKSIEIAYELCDLFTV
                     YDVDMEVHADINTNPHFKSNEALREAMGYILGMGFAFKAKPEAFASSSCANKVVN"
     gene            complement(4769..5140)
                     /locus_tag="VLL95_12060"
     CDS             complement(4769..5140)
                     /locus_tag="VLL95_12060"
                     /inference="COORDINATES: protein motif:HMM:NF024773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HSR39641.1"
                     /translation="MNMQPKKTVIIGASDKSSRYSYIAANRLVGHSHPIVPIGTHGGK
                     VAGEEIITEKPLLPDVDTVTLYINPFRQPAYYEYILSLQPKRVIFNPGTENHEFEALL
                     EQNGIEALEACTLVMLSTGQY"
     gene            6460..7896
                     /locus_tag="VLL95_12065"
     CDS             6460..7896
                     /locus_tag="VLL95_12065"
                     /inference="COORDINATES: protein motif:HMM:NF020390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1800 domain-containing protein"
                     /protein_id="HSR39642.1"
                     /translation="MASFANHFFWRAGFGPTTEDMYPTPTFDAPAYFNAWWQASAKPP
                     LPLIASKNVVDGLSNGINNIGRIEAANKEQKETRQQMMRQSREEIRSLNLIWLDEMVD
                     STAQLREKMALFWHGHFACRNLNSYYQQQLLHTIREGALGNFGELLKNVSQSAAMLAF
                     LNNQQNRKQSPNENFAREVMELFTVGRGNYTEQDIKEAARAFTGWGFNLNGEFVFRKQ
                     FHDTGTKTVLGVTSRHDGEDVLNILLDQPATAVFIVRKLYKFLVNEKVNEDRVKRLAK
                     SFYEGGYEIKPLLKDIFTSGWFYEKENTGSKIKSPVELWAGIRRILPMELDNPPIQLL
                     LQRALGQILLYPPSVAGWPGGTAWIDSSSLLLRMRLPHLVALAEPFAFAAKSDDDVSM
                     GRENMADAQKIPQRFKLKGDIDWDSLIKRFEKVPDAKLIDTIPASLLQSKQNPITSLA
                     SRFSRQDRITTIKQITIATMATPEFQLC"
     gene            7910..9109
                     /locus_tag="VLL95_12070"
     CDS             7910..9109
                     /locus_tag="VLL95_12070"
                     /inference="COORDINATES: protein motif:HMM:NF019040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HSR39643.1"
                     /translation="MLIKRRHFLQQTSLAAAGTLLIPKFLQGFHRQYPFQTGGKVLVV
                     IQLSGGNDGLNTIVPYRNDIYYQTRPKLALQPSQVMALNDEGGLHPALAFLKTCYQNG
                     ELAILNEVGYPNPDRSHFRSMDIWHSASASNEYVHTGWLGRFLDAACAGCEAPTQVLE
                     LDDVLSLALKGEKHKGIAFQDPRQLYTTSKSPAFEALANHHHAGEDPLADYLYRTLAD
                     TLNSAELIMEASRKAHTQPVYPDTQLGKNLKTIASLITSDINTSVYYASHGSFDTHIN
                     QQMQQNRLFTELNNALDAFVTDLKKQNRFKDVVIMTFSEFGRRVSQNASGGTDHGTAN
                     NMFIIGGGLKKPGFFNPLPTLQDLKDGDLQHKIDFRDVYWTMVENCLNASPEHILKGS
                     FQNLGFV"
     gene            complement(9415..>10186)
                     /locus_tag="VLL95_12075"
     CDS             complement(9415..>10186)
                     /locus_tag="VLL95_12075"
                     /inference="COORDINATES: protein motif:HMM:NF014654.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HSR39644.1"
                     /translation="PQFEGPFDLLLFFIERDELDIYNIPIHRIIKDFLAYIHDQEKLN
                     IELSSEFILFISTLMRIKAKMLLPRKDLDASGNEIDPRQELVDKILEYKRFKEASMKM
                     AELEAIRMLMVKRGNIQQEMNQLGEEAGEGTEIQSITLFKLMKTFEKVMKRMHDRNNK
                     PQHVVFKYNYTMEQSREYMFDSVKQQRTMSFENIFDVCENRIHAIFLFLSMLEMVQQR
                     FFNILIGEGSNNFIIEWNEEGPQELASAYPVQLDPVLN"
BASE COUNT         2774 a         2520 c         2320 g         2572 t
ORIGIN      
        1 acccaccatg gtgaaaatga ggttaaccag gccaataccc gtggagctca aaaatgcact
       61 cgacttggcc aggcctgcca tctcaaatac ccgaggcgca taataaatga tggcattgat
      121 ccctgaagcc tggttgaaaa atgccagcag gaaagcgagc aaaatgggcc agcggtactg
      181 cttcgaaaaa aagcggtgcg taggctgctg atccgattgc tgtttgtgcg ccaaaataga
      241 ttgcagcgtg gcttcggccg tgtcgggatc aatctgcttc aacacctgca aggcctcggc
      301 atagttgttt cggtgcagcg ccagccatct cgggctttcg ctgatggcca gggtaagcag
      361 cgtaaaaatg agcgaaggaa tgcctacaat tcccagcatc catcgccagt cgttggggtt
      421 gccactgccc tggaaaagat agttgctgac atacgccacc atgatgccaa atacgatgtt
      481 gaactggaac aaggccacca gccagcctct tttttttggc ggcgctattt cagaaatgta
      541 aagcggtgca ataacagaag aggcgccaat gctgaacccg ccgagcaacc ggaagatcat
      601 gaagctgtat acatcgttgg ccagcgccga tccaaccgag gaaaccagga agaacagccc
      661 cacccaaaaa aggcttcgtt tgcggcccat acggtcggca aaaaagccac cggtggcagc
      721 acctattacc gtgccataca aggcaatgga aatggcgagg ccgtgcatgg catcgcttag
      781 gctccacagt tgttgaatgg tttgttcggc accggaaata accgccacat caaggccaaa
      841 taaaaagccg cccaatgcca ccgtgagcga ccacaatacc agtttgttgt tcatacgact
      901 aagcaatggt tttgattgaa ctcaatgtaa ccaatcagcg aatcactgaa ctctcagcac
      961 acagggcaaa cgtttgcggc aactattgaa gtgagaagat tatcacaccc ttacgtaaat
     1021 cttcctcttg tcgagcccat agcccaccag ccagcaggtc atcatcacgg tcagcgcaaa
     1081 caacagcgaa cccaggtagc caccaaaatg actgaagata ttttggtaaa tccagctgta
     1141 gtagggttga ccatctgctg cctggaagaa ccacatcaat atggccagca attcgctcag
     1201 caggtaaatg aagagcgggt tcttgccaaa cacctcgaag aaataggtcc accgggtgcg
     1261 gccggcaaaa tcaaccacgt acatgatgcc ggcaatgatc atcaggtcga ggccaacggt
     1321 atgcaatacg aaagaactgg tccacagttt tttgttgatg ggaaattcca ggttccagaa
     1381 ataggccatc accagcaatg caaatcctgc cagcagcaat ttggccagtg tttcgtagct
     1441 gtttcctttt tcgcgaatga atttgcctgc ggcaaaaccg atcaccacat tggaaatggc
     1501 aggcagggtg ctcagcagtc cttccggatc aaaggctatt ccctctccat ggtacatgtg
     1561 cttttcacca atcagccatt tgtcgaggtg cagtaccgca ttctgctcca tgctcaatgg
     1621 atcaacacca gcaggcgcca tccaatacag caggccccaa tacaaaagca atcctcccgc
     1681 tgccagccaa taagtggttt tgggtttcag gaaatacagc atcaaagccg ctattccgta
     1741 gcacaacgcg atgcgctgca acacaccaaa cacccttgtt tcttcaaatg ggaataatac
     1801 gagttggcca ttcacctgct tcatgaaggg gaaccaatac atcaggaagc ccagcaggaa
     1861 tatgatgaaa gtgcgtttca ggatcttcgt taccactgca ctggtggcca tgccttccca
     1921 ttttggcatc acgaaactca tggcattgcc cacagcgaac aggaagctgg gaaaaacaag
     1981 atcggtaggc gtaaatccat gccattgtgc atgcagcaac ggagcgaaag tggtatcgta
     2041 attacccggg gtattcacga tgatcataaa acaaaccgtc attccccgga atacatccaa
     2101 tgcaaggaaa cgctgtgcag caggcttact catatggcaa tgtttttaca agtataccga
     2161 ttagctattg caatttttca ttgtcgcggt gccggttgga atcgcggata tttttcttgt
     2221 tgaaattctt ttgcaatgct tccgccaaat ccaccccggt ttggttggcc aggcagatga
     2281 gtacccacag cacatcggcc atttcatcgg acagctcctt tcccttgtcg ctctctttga
     2341 aagattgttc gccatacatg cgcaccatca ggcggctcaa ctcccctact tcttccatca
     2401 gaatgcccag gttggtcagt tcgttgaagt atcgcactcc aacagttttg atccactggt
     2461 ccacctgctc ctgcgcctgc ttcaacgtaa gctcgttcat atcagaaatc tttgtttttg
     2521 gtgtcgataa tgatggtgac aggtccatcg ttgagcagtc gcactttcat gtcggcgcca
     2581 aaaatgcctg tttgaatggg tttgcccagg tcggcttgca attgctgaat gaattgctcg
     2641 taaatgggta tggcgatatc aggcttgctg gcacggatat acgaaggacg gttccctttt
     2701 ttggtagcgg catgcaaggt gaactggctc acgagcagga tgtcgccgcc catgtctttt
     2761 acagaaatgt tgggcacttt ctgctcatca tcaaaaatgc ggaggttcac aattttgttg
     2821 ctcagccagg tgatgtcctc cgttgtgtcg gtgtcttcaa tacctaccaa caccagcagt
     2881 ccattgttga tggcaccatt tattttccct tctacggtaa cacttgcttc ggtcgctctc
     2941 tgaattactg cacgcatgcc tgttgcttaa ggcagtaaaa ataatggcct gtgcaaagcg
     3001 acgcacaagc catagtgggc aattatctac ttttaccgcc atggaaatca tcaaagccga
     3061 atacctgatc agcaagcccg atgtggcgca atgcccccag ggagaccgac cggagtttgc
     3121 ctttattggc cgaagcaatg tgggcaagag ttcactcatc aatatggttt gtggtaacca
     3181 aaagttggcc aaaacttcag catcgcccgg caaaacgcaa ttgatcaacc attttatggt
     3241 taccagccgc agcggccatt attccaaaac ttccacccag tggtacctgg ttgatttgcc
     3301 gggttatggg tatgccaagg tgagccagaa aaaccgcaag cagtggggca aaatgataga
     3361 agactacctg cgcaagcgtg ataacctgct caccacattt gtgttgattg acggaaggca
     3421 cgaaccgcag aaaattgata ttgaatttgt gaaccagatg ggagcctggg aactgcccct
     3481 ggcactggta tttaccaaag ccgacaaaat gaaacccggc ggtttgcagc gcaatgtcaa
     3541 cctgtttgcc gatgagctga gaaaaaactg ggaggcctta cctgccatgt tcattaccag
     3601 tgcagagacg gcgcaaggca aacccgaagt acttgattac ataaatggca ttatcaaatc
     3661 tgtgagctaa tacggtttcc attattttta tacaaactat cctccgatat gaaacatttt
     3721 ttgctgtacg gcatatgcct gcttttcacc gcaaactcct tactggccca aaactttgaa
     3781 cccgcaccgg gcccggttga agataaaatc aagctgctca tcaagcgtta cggcactggc
     3841 gaacgcatct acctgaacga tacgcaacga caaacttttg acgccagggg tggttctatc
     3901 tatgtagttg ggtttgtgta cacaccagca tcaaaaggca ccaggagaat gatggtgtat
     3961 gaaatgggcc ctaataatga aaagaagaat ctgaagtatc ccgattttag caagggttac
     4021 agagggccgc ttggtcagct tttttcggta aaacttttgc cagagggaga tgaaaatacc
     4081 ataaccacct ataaaataga tgctgacgat gaagcacagg tttacatctt taaagttgta
     4141 cctggcgtaa aatagattcc aggattaaga gaaagccgct tatcaaatga ataagcggat
     4201 tttttaattc actactttgt tggcgcaact gctgctggca aaggcttcag gtttggcttt
     4261 gaaggcaaag cccataccca ggatgtagcc catggcttca cgcaacgcct cgttgctttt
     4321 gaaatgcgga ttggtattga tgtcggcatg cacttccatg tctacatcgt ataccgtaaa
     4381 caaatcgcac aattcgtaag caatttcaat gctctttgcc acttccacca gcattctttc
     4441 cttgatgctg aatttttgtg tggtccgttc attgtgaatg aacatgaaac caccggctct
     4501 ttcccgtaga aatacaatga ctgtggcaaa ctcggtttcc ttgcctttta cctggctgtc
     4561 ggtaccgatg caaactttca aacggttgcc ggcttcggct tctcttttta tggcgtcttc
     4621 caccgctgcc ttaatgggca ggctaatggg gtcgccattg aattttctcc atcgcataaa
     4681 aaatggggtt ttctaaagtt atgccccatt cttgcgaaag aatcatttac ggtgtcaagc
     4741 ttttatgaac aattgtgaat tgcccaaact agtattgccc ggtagacaac attaccaggg
     4801 tgcatgcctc cagggcttca ataccattct gttcgagcaa ggcttcaaat tcatggttct
     4861 cggtgccagg attgaatatc acccttttgg gctgaaggct gagtatgtac tcataatagg
     4921 cgggctgtcg aaagggattg atgtacaacg taaccgtatc aacatcgggc agcaatggct
     4981 tttcagtaat gatttcttct ccagccactt ttccgccatg ggtgcctatg ggcacaatgg
     5041 gatgcgaatg tcctaccagc cggttggcgg ctatataact atacctgctc gatttatcgg
     5101 aggccccgat gatgaccgtt ttcttgggtt gcatgttcat cttctcagta attgtgcaat
     5161 ggtaggattg aacacgtata acatcaaata gttggcctca tgcctccgga tttttttaaa
     5221 aaaaataatg gaatggtgca gcggatcaat cttaccctgt gtctaaatgg ggtcaatcaa
     5281 cactaactgc tagaaaatgg ctgccgatta ctggcagcca tttgattttt caggcctcgc
     5341 catctagcag tttgcccatc ctccaatttc agcaacagca aaaaaaattg agccttctgc
     5401 aaaaaaaatt tattgattat caatggcttt tgtttgcaac tgccattgct ttttcatttt
     5461 ttgacatatg tcaaatggaa ttaaaaatga aatactttgt tttgtgttga aacaccgaaa
     5521 aacgccggtg ctcgctcaca ctccgtgatg attgaatagt tacccattaa ttctaaccat
     5581 cccattaagt tctgtcatca cttgctgacc cactgctcta aagtttaggt tgtttactgc
     5641 taatccactg gtcctaactt actaacctgt taatggatgt gactttgttc acgccctgtc
     5701 gctaacccat cacatgccgc cggctactgg tcgaggcaag gtattcgaca ttggtcgcag
     5761 gctggcaaaa cctacttgtc actacaacag agtctcatca aaccaggcac ctttggcgat
     5821 atgtctctga gaggagttgt agagataaac atattctggg gtgcttcgga actacagaaa
     5881 tgccaccgat ccgggtggca tttttgttgg ctatggtttc caaaaaacaa aaaagccccc
     5941 gcaggaagca ggggccagaa gttggtgctc tctcaacaca actccattat tcgaagcaaa
     6001 ctctcacaac attgttcccc cccccgattt caattgctga ttgttcagac tttgcctgct
     6061 catcgctttt cacagtaggg cttcttcaaa ggtttcagga tatatttttt ggttcaacct
     6121 ctgaaaaaaa attaccagcc agtacttaga agaagacaga gcgggaacgc cttacaatgc
     6181 gctgtacggc aaacagccat ttaccaattg aatgtgattt aggggttaaa ttaatagctc
     6241 caggccatcc tggtaacggg gtaaaactat acatcgctgt tcagggtggc agtttgactt
     6301 gtcaacagga ggtgaatagt tgcaaatacc cgcgccacta tggcattgcc atggtacagc
     6361 attaccctta tcactccatt ctgacccttt ctttctgcgc attatttatc ttaaacccaa
     6421 actaattcat cacgtccaac cgtttactaa acaaaaagca tggcttcttt tgccaatcat
     6481 tttttctggc gtgcagggtt tggcccaacc actgaggaca tgtatccaac acccaccttt
     6541 gatgcaccgg cttatttcaa tgcctggtgg caggcatctg ccaaaccacc gcttcctttg
     6601 atagccagca aaaatgtggt ggatggactt tcaaacggca tcaataatat tggccgcatt
     6661 gaagccgcaa acaaagagca gaaggaaacc cgccagcaaa tgatgcgcca aagccgtgag
     6721 gagatccgca gcctgaattt gatttggctg gatgaaatgg tggacagcac ggcccaactg
     6781 agggaaaaaa tggccctttt ctggcacggg cattttgcct gccgcaacct caacagctat
     6841 tatcagcaac aattgctgca taccattcgt gaaggtgcgc ttggcaactt cggcgaactg
     6901 cttaagaatg tcagccaatc ggcagccatg ctggctttct taaacaacca gcaaaaccgc
     6961 aagcagagcc cgaacgaaaa ttttgcccgt gaagtgatgg aattgttcac cgtgggcagg
     7021 ggcaattata ccgagcaaga cattaaagag gccgcacggg catttacagg gtggggtttc
     7081 aacctcaacg gagagtttgt tttcagaaaa cagtttcacg acaccggtac caaaacagtt
     7141 ttgggcgtaa ccagccggca tgacggagag gatgtgctga acattttgct ggatcaacct
     7201 gccacagcgg tattcatagt tcgcaaactg tataagttcc tggtaaacga aaaagtaaat
     7261 gaagacaggg taaaaaggct tgccaaaagt ttttatgaag gggggtacga aataaaacca
     7321 ttgctcaagg atattttcac cagcggatgg ttttatgaaa aagagaacac cggaagcaaa
     7381 atcaagagtc ctgttgaatt gtgggcaggc atcagaagaa tactcccgat ggaattggac
     7441 aaccctccta ttcaattgct gcttcaacgg gcgctgggcc aaatcctcct gtatccacct
     7501 tcggtagcgg gatggcctgg aggcaccgca tggattgaca gcagttcgct actgctgcgc
     7561 atgcgactgc cacacctggt ggcacttgcg gaaccatttg catttgctgc gaaatcggat
     7621 gatgatgtat cgatgggaag ggagaacatg gcagatgccc agaaaatacc tcaacggttt
     7681 aaattgaaag gagatattga ttgggattcg cttatcaaac gatttgagaa ggtgccagat
     7741 gcaaaactga tagatacaat accggcatca ttgctgcaat caaagcagaa cccgattaca
     7801 agcctggcgt cccgatttag ccggcaggac cgcatcacaa ccatcaagca aattaccata
     7861 gccaccatgg ccacacccga attccagctt tgctgacaac atacccgcta tgctgatcaa
     7921 aagaagacat tttctgcaac aaacatcgct ggctgccgca ggcaccctgc tgatacccaa
     7981 attcctgcag ggttttcacc ggcagtaccc tttccaaacc gggggcaagg tgctggttgt
     8041 gatccaactc agtggaggca atgacggttt gaataccatc gtgccataca gaaacgacat
     8101 ttattaccag acaagaccca aactggcgct gcaaccatcg caggtgatgg cactgaatga
     8161 cgaaggtggc ctgcaccctg cgctggcctt tttgaaaacc tgctaccaaa atggtgaact
     8221 ggccatactc aacgaggtag gatatcccaa ccctgaccga agccatttca ggagcatgga
     8281 catttggcat tctgcctctg cctccaatga atatgttcat acaggatggc tgggccgttt
     8341 cctggacgct gcctgcgcag gttgcgaagc ccccacccag gttctggaat tggatgatgt
     8401 gctaagcctg gctttaaagg gtgaaaaaca caaggggata gcctttcagg atccacgcca
     8461 actatatacc acgagcaaat cgcctgcatt tgaagccctg gcaaatcatc accacgcagg
     8521 agaagatcct ttggctgact atttgtacag aactcttgcc gataccctga atagtgctga
     8581 attgatcatg gaagcttccc ggaaagccca cacacaacca gtttaccctg atacccaact
     8641 cggcaaaaac ctgaaaacca ttgcttcgct cataaccagc gatatcaaca ccagcgtata
     8701 ctacgccagt catggaagtt ttgacaccca catcaaccag caaatgcagc aaaacaggtt
     8761 gttcactgaa ctcaataatg cgctggatgc ttttgtaact gacctaaaaa agcaaaaccg
     8821 attcaaagac gtggtgataa tgaccttcag cgaatttgga agaagagtaa gccagaatgc
     8881 cagcggcgga accgatcacg gcacggccaa caatatgttc atcatcggcg gcggtttgaa
     8941 aaagccggga ttttttaacc cactgcccac gctacaagat ctgaaagacg gcgacctgca
     9001 acacaaaatt gatttccggg atgtatactg gacaatggtg gaaaactgcc tgaacgcgtc
     9061 gccggagcac attttgaaag gctcattcca aaacctcggc ttcgtttaaa accccggtct
     9121 cccctactta taacaccata ataatcaacg aaaaagggtg aaaacaccct tttctgattc
     9181 gaaaaaaggg ctttactttg tgcctcactc aactcttatc ccactatgaa agaaaatctc
     9241 cgccgctatc taaacccgca caatctcgtt gcattttttc tgtgggcctt tgtaatggca
     9301 ttagtgattt actggaataa caaccaacaa ccttagcatc aaactccgaa aagaaataaa
     9361 aaaccgcccc ttttcctggt ggcggttttt ttattgattg tacttactgt tttatcagtt
     9421 gagaacgggg tccagttgca cggggtaggc actggccagt tcctgaggcc cctcttcgtt
     9481 ccactcaatg atgaaattgt ttgacccttc accaataaga atattgaaga aacgctgctg
     9541 caccatttca agcatgctca ggaataagaa tatggcatga atgcggttct cgcatacatc
     9601 gaaaatgttt tcgaagctca tggtacgctg ctgcttcact gaatcgaaca tgtactcccg
     9661 gctttgctcc atggtgtagt tgtacttgaa caccacgtgc tgcggcttgt tgttgcggtc
     9721 gtgcatccgc ttcatcacct tttcaaaagt cttcatcagc ttgaacaaag tgatgctttg
     9781 aatttcggtg ccctctcccg cttcttcgcc caactggttc atttcctgct gaatgttgcc
     9841 tcgctttacc atcagcatgc ggatggcttc cagttcggcc atcttcatgc tcgcctcttt
     9901 gaaccgtttg tattcaagga ttttgtcgac cagttcctgg cgcgggtcaa tttcatttcc
     9961 gctggcatcc aggtctttcc tgggcaaaag cattttggcc ttgatccgca tcagggtgct
    10021 gatgaacagg atgaattcgc tgctcagttc tatgttcagt ttttcctgat cgtgtatata
    10081 ggccaggaag tctttgatga ttctgtgaat gggaatattg taaatgtcca gctcgtccct
    10141 ttctatgaaa aaaagcagca ggtcaaaggg accctcaaat tgtgga
//
LOCUS       DATIQF010000707         2178 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_300116,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000707 DATIQF010000000
VERSION     DATIQF010000707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2178
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300116"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(161..472)
                     /locus_tag="VLL95_12080"
     CDS             complement(161..472)
                     /locus_tag="VLL95_12080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39645.1"
                     /translation="MAHPNIELISALRETAKRLRNEKHKYAWGNHGSCNCGNLLQVVT
                     KLDEKEIIQYARTGVGEWTELAEDYCGVTDAPVSLLISKLQQIGLTPSDIHNIEYLED
                     K"
     gene            642..1694
                     /locus_tag="VLL95_12085"
     CDS             642..1694
                     /locus_tag="VLL95_12085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39646.1"
                     /translation="MLIQILLGLSCLGLAQPVSGVWRGRVVKGRAPFATNYKVEVKII
                     RQGDSLTGTSYYYANPGLYYRYAIKGYLDATDGSLHWWDDVLIEQKGGTVNISGVNSQ
                     PLAMQTDFNCPGEGIMKLDGKAETKSGNELAVHLDKYDDPLFSDGWDPLITSWLYGGS
                     HPDLIAEADAEQRKGSAPVSPPAPAPQDVAKASPPAPAKPQAVPEKPIVTTEEKPAPP
                     TVAIKPTPAPPEPLTNQEKWERRQRIVQTTLPLAGDSIELQFFDNAEVDGDSIALFLN
                     GRLLFEHVKLSAEPFILKLAVQDIPANAELSMVAENLGAIPPNTSFMMAYINGQRYTD
                     RLESTEGSTAVIRFTK"
     gene            complement(1697..>2178)
                     /locus_tag="VLL95_12090"
     CDS             complement(1697..>2178)
                     /locus_tag="VLL95_12090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39647.1"
                     /translation="IALGLGMVVVSTIQYKQQVATENKKVLPPIKPGMYNVELFVKNG
                     DTLAADYADTTRWKEVIFDYNGQGSLNAVDSLFRIRYRRSYFAYLPDSTGNSLAFRKF
                     ATDSLPLFTLQLQQPDSNTMLLQGNIKNEAVSIRLRRMARHFQLAERQFHLLSEANR"
BASE COUNT          512 a          583 c          573 g          510 t
ORIGIN      
        1 cataggctgg ttcggcagca aggatctcgt ccaaccggat attcactgtc cgggccagct
       61 tgtcttccag caactgggcc aaggtttcca tgtacacaat cacatcttcg cgttggttgc
      121 ggctcagcca gcggaagcca ccgggcaatg cctgcagcac ttacttgtct tcgaggtatt
      181 caatgttgtg aatgtcgctg ggcgtgaggc ctatttgctg caacttgctg ataagcaggc
      241 tgaccggcgc atcggtaacg ccgcaatagt cttcggccag ttcagtccat tcgcctacac
      301 cggtgcgggc atattgaatg atctcctttt cgtccagttt ggtgactacc tgcagcaggt
      361 tgccgcagtt gcaactgccg tggttgcccc aggcatattt gtgtttttca ttgcgcagcc
      421 ttttggctgt ttcccgcagt gcgctgatga gttcgatatt cggatgtgcc atgcgtaaat
      481 gacaattgaa aaaatgaatg gttgaaattc aaggatagaa ttgattggcg ccgcaactgt
      541 ggaagatacc ggccctttat tggcttccaa actttaccaa acacttacaa aataccaaac
      601 ctcccgctgc gttttaggtg cctatgctgc tgactcggtt tttgctcatt cagattttgc
      661 tgggattgtc ctgcctggga cttgcccagc cggtgtcggg tgtttggcgc ggccgtgtgg
      721 tgaaaggcag ggcgcctttt gccaccaatt acaaagtgga agtaaagatc atccggcagg
      781 gcgacagcct caccggtact tcgtactact atgccaatcc cggtttgtat tatcgctatg
      841 ccatcaaagg ataccttgat gccactgatg gcagcctgca ctggtgggat gatgtactga
      901 ttgaacagaa aggcggcacg gtcaacatca gcggggtgaa ctcgcaaccg ctggccatgc
      961 aaaccgattt caactgcccg ggcgaaggca tcatgaaact ggacggcaaa gccgaaacca
     1021 aaagcggcaa tgagctggcc gtacacctcg acaagtacga tgatccattg tttagcgatg
     1081 gctgggatcc gctgatcacc agctggctgt atggtggctc gcatcccgac ctgattgcgg
     1141 aagcggatgc ggaacagcgg aagggcagtg cacctgtatc ccctcctgca cctgcaccac
     1201 aagatgtggc caaggcaagc ccgccagcac ccgccaaacc acaggcagtg ccggaaaaac
     1261 ccatagttac cactgaagag aaacctgcac cgcctaccgt ggccatcaag ccaacaccgg
     1321 caccacctga acccttgacc aaccaggaaa aatgggaacg ccggcaacgc attgtgcaaa
     1381 ccaccttgcc actggcaggc gacagcatcg agttgcagtt ttttgataat gccgaagtgg
     1441 atggcgacag cattgcgttg ttcctgaatg gccgcctgct gtttgaacat gtcaaacttt
     1501 ctgcagaacc tttcatctta aaactggcag tacaggacat accggccaat gccgaactga
     1561 gcatggtggc ggaaaacctc ggcgccattc cacccaacac atcgttcatg atggcctaca
     1621 tcaacgggca gcgctacacc gaccggctgg aaagcacgga aggatcaaca gcagtcatac
     1681 gatttacgaa atagtcttag cggttggctt cgctcagcaa gtgaaactgt ctttctgcca
     1741 actggaaatg cctcgccatg cgccgcaggc gaatggatac cgcttcgttt ttgatattgc
     1801 cttgcagcag catggtgttg ctgtcgggct gttgcaactg cagggtaaac agcgggagac
     1861 tatcggtcgc gaattttcgg aaggcgaggc tgttgccggt gctatcgggc aggtaagcaa
     1921 aataactcct gcgataacgg atccggaaca aggagtctac cgcattcaaa ctgccctgtc
     1981 cgttgtaatc aaagatgact tctttccaac gggtggtgtc ggcataatca gccgccagcg
     2041 tgtcgccatt tttcacaaac agctccacat tgtacatgcc cggctttatg gggggcaata
     2101 cctttttgtt ttctgttgct acttgttgct tgtattggat ggttgaaaca accaccatac
     2161 ccaggcccag tgcgatga
//
LOCUS       DATIQF010000708         1766 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_193643,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000708 DATIQF010000000
VERSION     DATIQF010000708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1766
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193643"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1107
                     /locus_tag="VLL95_12095"
     CDS             <1..1107
                     /locus_tag="VLL95_12095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39648.1"
                     /translation="IVPKILPNAWGGIVPPITFPNRHVLIEKYMAQNQWQSLADGATV
                     LDIGCGFPPLTSADMAARFPLVNFIGADPSFGKYTVSDAEGNYACILEDGNLKYMQPA
                     NISTHHWNDVFDDLESTKSKFLGMFRQLLSHLPAAESPNESEIFSMNGMKITRNPLHQ
                     YVRANLSFMQEGIGSNALPYNLDMIRCMNVLLYFDPPFRAYTLAWAAEHLKEGGLFIC
                     GLNYAQSVNGRFSVYQKQHGKMVLQEFAFSLDNIRPSEIVTFYNFRSDDFEQDNLMRL
                     VAILRSDNHFMQSFNAGFDSLLEQNKICSRKPDGYLGFIDVAAPPGELQLSMQRTTLQ
                     LGDAFGQQAAAVLQSAGLNAWVNDIGFIGVSLPG"
     gene            complement(1124..>1766)
                     /locus_tag="VLL95_12100"
     CDS             complement(1124..>1766)
                     /locus_tag="VLL95_12100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39649.1"
                     /translation="RLFNEPIPEFHLPQLQHHYLDDALDEMELLGVTMCNPFELVEDG
                     MVREDTNHGSGTNNGGESSNAVQVSDTRLNDSVGQATMPNSSRQPVAKSKYIPASDMP
                     AHLGKTITMLGYLITWKPVHTIKRELMYFGTFIDAHGDWLDTVHFPDSVKRFPLQGKG
                     FYRMNGVVVEEFGVYNLDVHHLEKLGIKSRAATKAGQLLEKQKDWQQGLIKRE"
BASE COUNT          397 a          461 c          423 g          485 t
ORIGIN      
        1 atcgtcccta aaattttgcc caacgcatgg ggtggcattg ttccccctat cacctttccc
       61 aaccggcatg tgctcattga aaaatacatg gcgcaaaatc aatggcagtc ccttgccgat
      121 ggcgccaccg tgttggatat cggatgcggt ttcccgccac tcacctctgc cgatatggcc
      181 gctcgttttc cattggtgaa ttttatcggt gcagacccgt cttttggaaa gtacacagtg
      241 agtgatgccg agggcaatta tgcctgcatt ttggaagacg gtaaccttaa gtatatgcag
      301 cccgccaata tcagcaccca tcattggaat gatgtttttg acgacctcga atcaacaaaa
      361 tcaaaattcc ttggcatgtt ccgccagttg ctttcgcacc ttcccgcagc tgaatcacct
      421 aacgagtccg aaatcttttc gatgaatggc atgaagatta cacgcaatcc tttgcaccaa
      481 tatgttcggg ccaacctctc ctttatgcag gaaggcatag gcagcaatgc attgccctat
      541 aacctggaca tgatccgctg catgaatgtg ttgctttatt tcgatcctcc cttcagggct
      601 tataccctgg catgggcagc cgaacacctg aaagagggag gcctcttcat ttgcggtctc
      661 aattatgcgc aatcggtaaa cggtcgtttt tccgtttacc aaaagcaaca tggcaagatg
      721 gtactgcagg agtttgcttt ttcacttgat aatattcgtc cttcagaaat tgttacgttt
      781 tataatttcc ggagtgatga ttttgaacag gataacctga tgcgattggt agccatattg
      841 cgaagtgaca accacttcat gcaatctttc aatgctggct tcgacagctt gctggagcaa
      901 aacaaaatat gcagccgcaa gcccgatgga tatcttggct ttattgacgt tgcggctccg
      961 cccggcgaat tgcagctcag tatgcagcgc actacgttac aattgggtga tgccttcggg
     1021 cagcaggcgg cggcagtact gcaatctgcc ggtttgaatg cctgggtaaa tgatattggt
     1081 tttatcgggg tgagcttgcc cggctgatgg gcgattgcaa ttgttattcc cttttgatca
     1141 atccctgctg ccagtctttt tgcttctcca gcaattgccc tgccttggtt gccgcccggc
     1201 ttttgatgcc cagtttttcg aggtgatgca catcgaggtt gtacacgcca aactcttcta
     1261 ccaccacgcc gttcatgcga tagaagccct tgccctgcag cggaaaacgc ttcacactgt
     1321 cgggaaaatg cacggtatcg agccagtcgc catgcgcatc tatgaacgta ccgaaataca
     1381 tcagttcccg cttgatggta tgcacaggct tccaggtaat gaggtagccc agcatggtga
     1441 tggtctttcc cagatgtgcc ggcatgtcgc tggcaggaat gtatttgctt ttggcaacag
     1501 gctgcctgct actattaggc atggttgcct gcccgactga gtcattcagg cgggtgtcac
     1561 tcacttgtac ggcattgctg ctttcaccgc cattgttcgt gccgctgcca tggttcgtgt
     1621 cttcacgaac catcccatcc tccaccagtt caaacgggtt gcacatcgta acacccagca
     1681 gttccatttc atccagcgca tcatccaggt aatggtgctg caactgcggc agatgaaact
     1741 cgggaatggg ttcgttgaat aatcgg
//
LOCUS       DATIQF010000709         3977 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_102210,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000709 DATIQF010000000
VERSION     DATIQF010000709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3977
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102210"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            50..1375
                     /locus_tag="VLL95_12105"
     CDS             50..1375
                     /locus_tag="VLL95_12105"
                     /inference="COORDINATES: protein motif:HMM:TIGR01326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HSR39650.1"
                     /translation="MSQLRFETLQLHAGQQIDPTTKSRAVPIYQTTSYGFDNAEHAAN
                     LFGLKAFGNIYTRIMNPTNDVFEQRIAALEGGVAALAVGSGQAAQFIALNNILQAGDN
                     FVTISFLYGGTYNQFKVAFKRLGIEARFADGDSPESFARLIDKNTKALYLETIGNPRL
                     NIPDFEAFAALAKEYDLPLIVDNTFGAGGFFFQPLKHGAHVVVESATKWIGGHGTSIG
                     GVIIDGGNYDWGNGKYPQFSEPSEGYHGLVFKDVFGVNNPLGLPNIQFAIRARVEGLR
                     DFGPALSPFNSFLLLQGLETLSLRAQRHADNALALAKWLEQHPQVEYVLYPGLESNPY
                     HSFAKKYLQNGYGGVLQVGLKGGKEKAAQFIDSLQLASHLANLGDAKTLVIHPASTTH
                     EQLSETEQIASGVSPAQVRVSVGIEHIEDIKDDFQQAFDKVFQPAHVLN"
     gene            1456..1773
                     /locus_tag="VLL95_12110"
     CDS             1456..1773
                     /locus_tag="VLL95_12110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39651.1"
                     /translation="MSVVSKQNETAPVEADKQVGIPCETKFFRVPQDLCSPAEKLKWK
                     GFQLESGCKLREYHLAYTTCGQLNAQRNNVVWIFHALTANSQPREWWDGLVGEGKFLD
                     PAK"
     gene            1777..2592
                     /locus_tag="VLL95_12115"
     CDS             1777..2592
                     /locus_tag="VLL95_12115"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSR39652.1"
                     /translation="MVCVNTPGSCYGSIGPLDTDPETGKPLYHQFPFFSTRDLVRSYQ
                     PLRRFLGIEKIAVGIGGSIGGQQLLEWAIEEPELFDHIIPIATNAIHSPWGIAFNTTQ
                     RMIIEADGNWQQQQPDAGIEGMKAARAMALISYRSYEGYQLTQARNNSQWMLNNSGED
                     KGGAASYQRYQGEKLAKRFNAFSYYTLTKTMDSHNVGRDRGSVEDALREIKARTLVIG
                     IDSDVLFPLSEQEFLARNIPGASLVAISSLFGHDGFLLEFASIEQHIRKFLET"
     gene            2698..>3977
                     /locus_tag="VLL95_12120"
     CDS             2698..>3977
                     /locus_tag="VLL95_12120"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:NF004976.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HSR39653.1"
                     /translation="MSQNIEHPDYHHKQLTIGLFGFGVVGEGLYQVLKQTPSLKAAIK
                     KVCIKHPDKKRNAPRELFTTERDEILNDPEINVVVEVIDDADAAFYIVKTALLGGKHV
                     VSASKKMIAEHLPELLQLQQETGQSFLYEASACASIPVIRNLEEYYDNDLLHSIQAIV
                     NGSTNYILTKMFEEKLSYRDALLQAQQLGFAESNPKLDVEGYDAVNKWNNLLAHAYGI
                     VTSPENILFTGIQNIQGFDAQVAAERQYVIRLVAQAKKLDNGKVAAFVLPQFVQQTDH
                     LSFVRNEYNGVVIESGFADKQFFYGKGAGSFPTASAVLSDISALRYDYRYEYKKLYHH
                     VPGELTNDYYLKVYLSFENVEEVPKDKFEWIEEWHAREDRKYLVGVLHVEHLINDDWW
                     KRNGTSLVLLPEAIIESLDILKLKKKSLELAGLQL"
BASE COUNT         1030 a         1000 c         1054 g          893 t
ORIGIN      
        1 cctgcggggg aatgggtggc aatttttaaa cttaaaaaca ccaaacacca tgagccaatt
       61 acgatttgaa accctgcaac tgcacgccgg acagcaaatt gatcccacta ccaagagccg
      121 cgccgtgccc atttatcaaa ccacttctta cggcttcgac aatgccgagc atgccgccaa
      181 cctgtttggt ttgaaagcct ttggcaatat ctacacccgc atcatgaacc ctaccaatga
      241 tgtgtttgag cagcgcattg ccgccctcga aggaggggta gccgcattgg cggtaggcag
      301 cgggcaggcc gctcaattca tcgccctcaa caacatcctg caggccggcg acaattttgt
      361 gaccatttct ttcttgtatg gcggcaccta caaccagttc aaggtggctt tcaagcgcct
      421 cggcattgaa gcccgctttg cagatggtga cagcccggaa agctttgccc ggctcatcga
      481 caagaacacc aaagcgctgt acctcgaaac catcggcaac ccccgactca atattcccga
      541 ttttgaagct tttgccgctt tggccaaaga atacgacctc ccattgatcg ttgacaacac
      601 gttcggcgcc ggcggttttt tcttccagcc actgaagcat ggcgcccatg tggtggtgga
      661 aagcgctacc aagtggattg gcggccatgg caccagcatc ggcggtgtga tcatcgatgg
      721 cggcaattat gattggggca atggaaaata cccccaattc agtgagcctt ctgaaggata
      781 ccacggactt gttttcaaag atgtatttgg cgtgaacaac ccgctgggtt tgcctaatat
      841 ccagtttgcc atccgtgccc gggttgaagg gctgcgtgat ttcggaccgg ccctgagtcc
      901 tttcaattca ttcctgctgt tgcaaggttt ggaaaccctg agcctgcgtg cccagcgtca
      961 tgccgacaac gccctggcgt tggcaaaatg gctggagcag catccgcagg tggagtatgt
     1021 tttgtatccc ggtttggaaa gcaaccccta tcacagtttt gctaagaaat atttgcagaa
     1081 tggttacggc ggtgtgctgc aggtagggtt gaaaggcggc aaagaaaaag cggctcaatt
     1141 catcgacagc ctgcaactgg ccagccacct ggccaatttg ggcgatgcca aaacactggt
     1201 gatacatcct gccagcacca cccacgaaca gctgagcgaa acagaacaaa ttgccagtgg
     1261 cgtatcaccg gcacaggtaa gggtaagtgt aggcattgaa cacattgagg atatcaaaga
     1321 tgatttccag caggcttttg acaaggtatt ccagccggca catgtattga actgatccat
     1381 ttaaccacaa agacgcgaag aagattcgtg tctttgtggt tcttgatttt tataatagca
     1441 gctacgaagt attagatgag tgtggtaagc aaacaaaacg aaacagcgcc cgttgaagca
     1501 gacaaacagg tgggcattcc ctgcgaaacc aaatttttca gggtgccgca agacctgtgc
     1561 tcgccagccg agaagctgaa atggaaaggc tttcagctgg aatcgggctg caagctgagg
     1621 gagtatcatt tggcatatac cacctgcggc caactgaacg cccaacggaa taatgtagtt
     1681 tggatatttc atgccctcac tgctaacagc cagccccgtg aatggtggga tggattggtg
     1741 ggtgagggta aatttcttga tcccgcgaaa taattcattg tttgtgtaaa tacccccggc
     1801 agttgctatg gcagcatcgg cccgctggat accgacccgg aaaccggcaa gcctttatat
     1861 caccagtttc cttttttcag cacccgcgac ctggttcgca gctaccaacc gctgcgccgg
     1921 tttttgggca ttgaaaaaat tgccgtgggc atcggcggca gcattggcgg ccagcaactg
     1981 ctggagtggg ccattgaaga gccggagttg tttgatcaca tcattcccat tgccaccaat
     2041 gccatccact ctccgtgggg catcgctttc aataccacgc agcgcatgat cattgaagcc
     2101 gatggcaact ggcaacagca acagccggat gcgggtattg aaggcatgaa agcggcgagg
     2161 gccatggcgc tgatctcgta ccgcagttat gaaggctacc aactgacgca ggcccgcaac
     2221 aacagccagt ggatgctgaa caacagcggc gaagacaaag gtggggctgc atcgtaccag
     2281 cgctaccagg gcgaaaaact ggccaaacgt tttaatgcct tcagctacta cacactcacc
     2341 aaaaccatgg acagccacaa tgtgggccgc gaccgtggtt cggtggaaga tgcgttgcgg
     2401 gaaataaaag cccgcaccct ggtgatcggc atcgacagcg atgtgctgtt tccattgagc
     2461 gaacaggaat tcctggcgag gaatattccc ggcgcctcat tggttgccat cagcagtttg
     2521 tttgggcacg atggcttcct gctggagttt gcttccattg agcaacacat ccggaagttt
     2581 ttggaaacgt aagaaagttc acaagttcac gagttcacaa gttcacgagt tggaagaagg
     2641 cagaagataa tcaaatcaga catcaggcat catacatcaa aaaatcaaca ttcacatatg
     2701 tcacaaaaca tcgagcatcc ggattaccat cataaacagc tgaccattgg tttgttcgga
     2761 tttggcgtag taggagaggg cttgtaccag gtactgaagc aaacgccatc actgaaagca
     2821 gctatcaaaa aagtttgtat caagcatcct gataaaaagc gcaatgcgcc gagggaattg
     2881 ttcactaccg aacgtgatga gatcctgaac gatcccgaga tcaacgtggt agtggaagtg
     2941 attgacgatg cggatgcggc cttctatatc gtgaagactg cgttgctggg cggcaagcat
     3001 gtggtaagcg ccagcaagaa gatgatcgcc gagcatttgc cggagttgct gcaattgcag
     3061 caggaaacgg gccagtcctt tttgtatgaa gcctctgcct gtgcttccat cccggtgatc
     3121 cgcaacctcg aggaatatta cgacaacgac ctgttgcaca gcattcaggc catcgtgaac
     3181 ggcagcacca attacattct caccaaaatg tttgaagaga agttgagcta ccgcgacgcc
     3241 ttgctgcaag cccagcaatt gggttttgcc gagagcaacc ccaagctgga tgtggagggc
     3301 tatgatgccg tgaacaagtg gaataacctg ctggcccatg cctacggcat cgtgacttct
     3361 cctgaaaaca tcctgttcac cggtattcaa aacatacagg gttttgatgc gcaggtggct
     3421 gccgagcggc agtatgtgat caggctggtg gcccaggcca agaaactgga caacggaaag
     3481 gtggccgcat ttgtgttgcc gcagtttgtg cagcaaaccg atcacctgtc gtttgtgcgc
     3541 aatgaataca acggcgtggt gattgaaagc ggctttgccg ataagcagtt cttttatggc
     3601 aaaggagccg gcagttttcc taccgcttca gccgtgctga gtgatatctc tgccttgcgt
     3661 tacgactatc gctatgagta caagaaactc tatcaccatg tgccgggcga actgacgaac
     3721 gattattacc tgaaagtgta cctgagtttt gagaacgtgg aagaagtgcc caaggacaag
     3781 tttgagtgga ttgaagaatg gcatgcccgc gaagaccgca agtacctggt aggcgtgctg
     3841 cacgtggagc atttgattaa cgatgactgg tggaagcgca acggcacttc gctggtattg
     3901 ctgcccgagg ccatcattga aagcctcgac atcctgaagt tgaaaaagaa aagcctcgag
     3961 ctggctggat tgcaact
//
LOCUS       DATIQF010000710         2662 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_224186,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000710 DATIQF010000000
VERSION     DATIQF010000710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2662
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224186"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1052
                     /locus_tag="VLL95_12125"
     CDS             <1..1052
                     /locus_tag="VLL95_12125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39654.1"
                     /translation="ASMIYLPVLMLLLLLLQRFAGSTSAMKKPDAGEWFRNFFLLVLL
                     CWVMISAAYQFDHMLFPIGQLPEQSHAMQQLKQSLGGIASWPVPLPYNYVQAFDLLRY
                     HGDLGGAPHPDNTYAGVSILGHYYEHGPVWYYYLAVFFIKLPLLSLLLLATTLVLFFR
                     HDVTGKLRRHVFIWLPLLFFGIMLSVTNPFQIGIRHALILYPFLYLLVGYGILFWWQR
                     RPDWMRAGLAIQFLFLLSFWPNMIAYTNELFWPKHMVYRYVHDSTVSYAQSTPYLQKF
                     LAENPEYKLAPTAPQAGRFALLVDQYAASFNRFGYDWLYKNFEPVGHYMHNVLLFEIT
                     EASLREKGLAPAAAK"
     gene            1108..>2662
                     /gene="glgB"
                     /locus_tag="VLL95_12130"
     CDS             1108..>2662
                     /gene="glgB"
                     /locus_tag="VLL95_12130"
                     /inference="COORDINATES: protein motif:HMM:NF008967.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003844 - 1,4-alpha-glucan branching
                     enzyme activity [Evidence IEA];
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0043169 - cation binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0005978 - glycogen biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HSR39655.1"
                     /translation="MLPKKKVKAAKAAPAAKKTAKKASPKKSALLHADAHAHSDTHAK
                     VATARKPTAKAEPTLHATPHAHPEHHLVAEPKKAAAKKSPLKQKRYEDIHFVDSSKPV
                     WNYSRFAPEDLQNLHQGTLYRGYDLFGAHAMQVLDTDGYYFAVWAPNASSVSVIGDFN
                     QWKPHAHELMVRLDQSGIWEGFIPHLKKGEAYKFHIVGFQGVRLDKGDPYAMYWEVRP
                     KTASITWSIDGYEWKDSDWMKKRARHNSLEAPWNVYEVHLASWMRPDKNDEETYNTYA
                     QITERLVPYVKEMGFTHVELMPVMEHPYDGSWGYQGIGYFAPTSRFGTPQEFMAMVDA
                     FHEAGVGVILDWVPSHFPYDMHGLFMYDGTHTYEYADMRKGYHPDWNSYIFNYKRNEV
                     KSFLISSARFWFDKYHIDGIRVDAVSSMLRLDYSRNEGQWEPNEFGGNGNIEAIAFLK
                     EMNEMIFRDFPDTQTIAEEATDWPGISRPTYADGLGFGMKWMMGWMHDTLKYFKQDPI
                     FRQFHQDQLS"
BASE COUNT          637 a          711 c          693 g          621 t
ORIGIN      
        1 aagcttccat gatctacctg ccggtgctga tgctgctgct tcttttgctg cagcgttttg
       61 ccggcagcac ttctgcgatg aaaaaaccgg atgccgggga atggtttcga aatttctttt
      121 tgctggtgct gctgtgctgg gtgatgatca gcgccgcgta ccagtttgat cacatgttat
      181 ttcccattgg ccaactgccg gagcagagcc atgccatgca gcagctgaag caatcattgg
      241 gcggcattgc cagttggccg gtgcccttgc cctacaatta tgtacaagct ttcgatttgc
      301 tgcgctacca tggcgatttg gggggagctc cccatcccga taatacttac gccggcgtca
      361 gcatccttgg ccattattat gaacacggac cggtttggta ttattacctc gcagtgtttt
      421 tcatcaaact gccattgctt agtttgctgc tgttggcaac caccctggtg cttttctttc
      481 ggcacgatgt gaccgggaag ttgagaagac atgtgttcat atggctgccg ctcctgtttt
      541 ttggcatcat gctgagcgtg acaaacccat tccagatcgg aatccggcat gcgttgattt
      601 tgtatccttt tttatacctg ctggtgggtt acggcatcct tttttggtgg cagcgccggc
      661 ccgattggat gagagcaggc cttgccatac agtttctgtt tctcctgagt ttctggccca
      721 atatgatcgc gtataccaac gagttgttct ggcccaaaca tatggtgtac cgctatgtgc
      781 acgactccac cgtgagctat gcgcaatcga ctccttatct ccagaagttc ttagcagaaa
      841 acccggaata taagttggcg cctactgccc cgcaagccgg caggtttgcc ttgctggtag
      901 accaatatgc ggcttcattc aaccgcttcg gctacgattg gctttacaag aattttgaac
      961 cggtgggcca ttacatgcac aatgtgctgc tgttcgaaat taccgaggca tcgctgcggg
     1021 agaaaggatt ggcgcctgcc gctgccaaat gacagccgcc gccgcttcat aattgcttac
     1081 atttagacag atataaagaa gatcgttatg cttccgaaga aaaaagtgaa agcagccaaa
     1141 gctgccccag ccgcgaagaa aacggcgaag aaagccagcc ccaaaaaatc agcactcctg
     1201 catgccgatg cgcatgccca ttccgatacc cacgccaaag tagccaccgc ccgaaaacca
     1261 accgcaaaag cggagcctac cttacacgcc actcctcatg cacatcccga acatcatttg
     1321 gtggctgaac ccaaaaaagc cgctgcaaaa aaatcgcctt tgaaacagaa acgatacgag
     1381 gatatccatt tcgtagacag cagcaaaccg gtgtggaact acagccgttt tgcgccggaa
     1441 gacctgcaga acctgcacca gggcacgctg taccgtgggt acgatctctt tggtgctcac
     1501 gccatgcagg tgctcgacac cgatggctac tactttgccg tgtgggcgcc caatgcttcc
     1561 tcagtaagcg tgatcggcga tttcaaccaa tggaagccac atgcccatga actgatggtg
     1621 cgcctcgatc aatcgggcat ttgggaaggt ttcattcctc acctgaaaaa aggcgaagcg
     1681 tacaagttcc acatcgtggg cttccagggt gtcaggctcg acaaaggcga tccttatgca
     1741 atgtattggg aggtgcggcc caaaacggct tccatcacct ggagcatcga tggctatgaa
     1801 tggaaggaca gcgactggat gaaaaagcgg gcccggcata acagtttgga agcgccgtgg
     1861 aatgtgtacg aagtgcacct ggccagctgg atgcggccgg ataagaatga cgaagagact
     1921 tacaacacct acgcacagat caccgagcgg ttggtgccct atgtaaaaga aatgggcttt
     1981 acgcatgtgg agctgatgcc ggtgatggag catccttacg atggcagctg gggctaccag
     2041 ggcatcggct attttgcacc caccagccgc tttggcacgc cacaggaatt catggccatg
     2101 gtggatgcgt ttcacgaggc cggggtgggc gtgatcctcg actgggtgcc gtcgcatttc
     2161 ccttacgaca tgcacggcct attcatgtac gacggcacgc atacctacga gtatgccgac
     2221 atgcgcaagg gttatcaccc cgactggaac agctacatat tcaactacaa acggaatgag
     2281 gtaaaatcat tcctcatcag cagtgcccgt ttctggttcg ataaatacca tatcgatggc
     2341 atcagggtgg atgcggtgag cagcatgctg cgccttgatt acagccgcaa cgaaggacag
     2401 tgggagccga atgaatttgg cggcaacggc aacatcgaag ccattgcctt cctcaaggaa
     2461 atgaacgaga tgatcttccg cgattttccc gatacgcaaa ccattgccga agaagccacc
     2521 gactggccgg gcatcagccg ccccacgtat gccgatggtt taggttttgg catgaagtgg
     2581 atgatgggct ggatgcacga taccctcaag tatttcaaac aggatcccat attccgccag
     2641 ttccaccagg accagctttc ct
//
LOCUS       DATIQF010000711         8429 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_87204, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000711 DATIQF010000000
VERSION     DATIQF010000711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8429)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8429)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8429
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87204"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..744)
                     /locus_tag="VLL95_12135"
     CDS             complement(<1..744)
                     /locus_tag="VLL95_12135"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase"
                     /protein_id="HSR39656.1"
                     /translation="MSKVNVGLVQMSCTANKADNLAKAIEKIREAAAKGAQIVCLQEL
                     FTSLYFCDVEDYANFELAEPIPGPSTDALQKVAAELNVVVIASLFEKRAQGLYHNTTA
                     VIDADGSYLGKYRKMHIPDDPAYYEKFYFTPGDLGYKVWKTKYATFGVLICWDQWYPE
                     AARITSLMGAEILFYPTAIGWATSQDEATNDEQYNAWQTIQRSHAVANGVHVVSVNRV
                     GFEQNGAMKFWGGSFISNPFGRLLYKASHE"
     gene            875..3760
                     /locus_tag="VLL95_12140"
     CDS             875..3760
                     /locus_tag="VLL95_12140"
                     /inference="COORDINATES: protein motif:HMM:NF026255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR39657.1"
                     /translation="MAQKLHFTLFLALFIVAAAFSVNAQTFTIKGLLRDADTARYLGK
                     ATVKLAPMADTSRGRFVTANDNGQFTIAEVKPGTYLLTFSFTGYQQQNRRVSVTSANI
                     DLGDVLMVKQEKTLGEVTVVGKVPPARQKGDTTEFNAAALKSNPDATTEDVLRKAPGI
                     TIENGQVTAQGEQVRRITIDGRQYFGDDATAALRNLPAELIDKIQVFDRLSDQAQLTG
                     FDDGSGYKAINIVTKANMRNGQFGRVYGGYGTDDRYAAGGSVNFFKKDTRVNLIGLFN
                     NVNQQNFSGEDLLGVNGQANNQGRGGFQGGGGGGGRGGGGPQGNFGGGRGGSFQVGQQ
                     PGIATTNAFGVNFSDLWLKKKMEVSASYFFNNSKTIADRETNREVFLPGDTSQFYNEK
                     NNSVTTNYNHRFNFRGEYKIDSNNTLIFAPNLSFQSNEFDNRLVGVNNTATNALINAT
                     INDRNTKSEGFSFRNEMTYRRSFAKRGRSVSVNLNNNINDRNSDTYLDAISSFFKTGF
                     LVNDTLRQFTDNTTKSNSISTNIAYTEPVGKKGQLQLNYNPQWTRNQADQKNLRFDKV
                     AQEYNILDTAQTNIFDNKVQAQSTGLTYRVGDRESQFSVGINYQSTRLLSSQSFPKVA
                     SLDKTFSNWLPNLQWRKQLNKQTNLRLFYRASVNPPSVNQLQNVYNISNPLFITTGNP
                     FLDQSYTHFFNARLSSTNTTKGRSMFAGIFAQAVNDFVTNGTWVAAQDSVLEKDIVLR
                     KGSQLSKPVNLDGYYSVRSFFNYGFPIKPIKSNLNLNAGVNYTRTPGAINDVVNYSNN
                     YAYTLGVNVASNISEYIDFNISYSGNFNNVVNSIRPELNNRFYFHNAGVKVNVLSKNG
                     WFLLNDLNNQIYSGLADGFNQNFWLWNVSAGKKFLKKQRGELKLSVFDLLNQNQSVVR
                     NVGETFIEDVQTVVLQQYFMLTFTYTLRNFGQAAKNGKGENGTLQRR"
     gene            3791..4366
                     /locus_tag="VLL95_12145"
     CDS             3791..4366
                     /locus_tag="VLL95_12145"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSR39658.1"
                     /translation="MIEQELIERLKQGDQEAFRFMVTSWQDMVYNTSLGLVQNEMDAE
                     DVTQEVFVKAFESIQGFKGESKVSTWLYRITVTKSLDFLRSKKRKKRFGYVYSLFGPD
                     NELSINPPEFVHPGVVSEKKQVAAALFKALDQLPEQQRVAFVLTRLEGLGHKEVSEVM
                     GNTVPAVESLLQRAKTNLKKQLTEFYRQNLE"
     gene            4409..4741
                     /locus_tag="VLL95_12150"
     CDS             4409..4741
                     /locus_tag="VLL95_12150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39659.1"
                     /translation="MNKDSNMQQWVDGALESIDGLPRAQANPFLFTRIQERLRQRNSP
                     WEKVASFVARPAFAVAIVVAFLSVNLYVANRQKEERLAREKQTNEQMFAAEYNTGSSL
                     QNELLPNR"
     gene            4738..5223
                     /locus_tag="VLL95_12155"
     CDS             4738..5223
                     /locus_tag="VLL95_12155"
                     /inference="COORDINATES: protein motif:HMM:NF025173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic heavy metal sensor"
                     /protein_id="HSR39660.1"
                     /translation="MMNTGNNNKILLSLLVLLLLTNVGMLWYFTREEKIEAKPVTRTE
                     RMAAMVQRELGLTDEQKQQYIALRLKRDSLLAPLNADLRAAKIEMINLLKQDGVPDSM
                     VQAVAAKIAAKQVPIEMEFYKHFIRVKAMCQPQQYGPLDSLLNRMVRRNTGDTTVPSS
                     N"
     gene            5337..7298
                     /locus_tag="VLL95_12160"
     CDS             5337..7298
                     /locus_tag="VLL95_12160"
                     /inference="COORDINATES: protein motif:HMM:NF019556.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-L-arabinofuranosidase domain-containing
                     protein"
                     /protein_id="HSR39661.1"
                     /translation="MKFQYLLALALPVCINKGQAQAAMKRLDPVGFEKVEIVDDFWKP
                     KIDKVATITLEACIYQTAVKTPRIRNFEKVARGKGEPHEGIFYDDSDVFKAIEAMAYA
                     IQSKANPKLEAIADEWIDKIAAAQLPDGYLNTWYTLKGLDQRWTDMSMHEDYNGGHMI
                     EAGVAYYQATGKRKLLDVCIKWADHFDSLFGPGKRHWVTGHQELELALVKLYKVTNDK
                     KYLDLADWLLGERGHGFAKGYTWTDWKDTAYAQDVVPVKQQSEITGHAVRAMYMYTGA
                     ADVAAQTGDQAYMQAMRRVWEDVVYRNMYITGGIGSSGSNEGFSNDYDLPNEQAYCET
                     CASVGMVFWNQRMNALTGSSEYMDVLERVLYNGALDGLSMSGDRFFYGNPLASDGRHF
                     RREWFGTACCPSNIARLVASLGNYIYAHTEKDLYVNLFVGSRTQLTLNNAAVNVSQQT
                     DYPWNGKVQIAIDPAKATQFAVRIRIPGWVERKAVPGDLYKMEDGAALVGFTVNGVGV
                     AYKEINGYAVIDRAWKKGDVLSFEYAMPVTKVVSRAEVKQNEGRIALQRGPLVYCVEG
                     ADNNGTAWDFIVPPATVFETMEYRVLDEKVMAIGMKVPALSVSSDGTRVQTVEKRITA
                     IPYYAWANRGKNEMQVWLPASFQNIKINR"
     gene            7302..8369
                     /locus_tag="VLL95_12165"
     CDS             7302..8369
                     /locus_tag="VLL95_12165"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HSR39662.1"
                     /translation="MSAQPMRQRAWMALCLLLLTQMLPAQTRQWTAQQANEWYAKTGW
                     HCGANFLPSTAINQLEMWQAETWDPVTIDRELGWAENLGMNVMRVYLHDLAWKADPSG
                     FLQRMDDFLGIAAKHHIRILFTIFDDCWNPDAAIGRQPAPIPGVHNSGWVRSPNKAMH
                     DDTTTYSQLEPYVKAVLQRFKNDERVWLWDLYNEPANSGYGLSSFPLLKKVFQWAWDV
                     RPSQPVTAGVWFAEYPAINAFQLQYSDVITFHNYNDTVSMKSAIDSLQKRGRPVICTE
                     YMARTNNSRFETHLPLLKRYQVSAINWGLVSGKSNTIFPWGSKEGTPEPALWFHDVFR
                     KDGTPFSVAEIQVIKKVNGIQ"
BASE COUNT         2225 a         2126 c         2211 g         1867 t
ORIGIN      
        1 ttcatggctg gctttgtaaa gcaggcgtcc gaagggattg ctgatgaagg agccgcccca
       61 gaatttcatg gcaccatttt gctcgaaacc aacgcggttc acgcttacca cgtgcacacc
      121 gttggccacc gcatggctgc gctgaatggt ttgccaggca ttgtactgtt catcattggt
      181 ggcttcgtcc tgcgaagtgg cccatccgat ggcggtaggg tagaaaagga tctcggcgcc
      241 catgaggctg gtgatgcggg ccgcttcggg gtaccattga tcccagcaaa tgagcacgcc
      301 gaaagtggcg tatttcgttt tccaaacctt atagcccagg tcgccgggcg tgaagtagaa
      361 tttttcgtag taagccgggt catcggggat gtgcattttg cgatacttac cgaggtagct
      421 gccatcggca tcaattacgg cagtggtatt gtgatacaat ccctgtgcac gtttttcaaa
      481 caagctcgca ataacgacca cgttgagctc ggcggctact ttttgcaaag cgtctgtgct
      541 ggggccggga atgggttcgg ccagttcgaa gttggcatag tcttccacat cgcagaaata
      601 gaggctggta aacagctcct gcaggcatac gatctgtgcg cctttggcgg cagcttccct
      661 gattttttca atggccttgg ccaggttgtc agctttgttg gcagtgcagc tcatttgcac
      721 caatcctaca ttcactttgc tcatggttcg gataattgct gtgaaacaat aatggcggca
      781 aaagtattgt ttgcaggctg cattcagcaa ttgttaaaat attattacgc caatggaatt
      841 cgacagtttg aaagtcatta gccgtcaaaa tactatggca caaaagctcc acttcacact
      901 gtttcttgca ctgttcatcg ttgccgccgc gttttctgtc aatgctcaaa catttaccat
      961 caaagggctg ttgcgtgacg ccgacactgc ccgctacctg ggcaaagcca ctgtaaagct
     1021 ggcgcccatg gctgatactt cacgtggccg ttttgtgact gccaacgaca atggccagtt
     1081 cactattgcg gaagtgaaac cgggcaccta tcttctcact ttttctttca ccggctacca
     1141 gcagcaaaac cgaagggtca gtgttacctc tgccaacatt gacctgggcg acgtgctgat
     1201 ggtgaagcag gaaaaaacat tgggtgaagt gaccgtggtg ggaaaagtgc cgccggcccg
     1261 ccagaaaggc gataccaccg aattcaatgc ggcagcgctg aaatcgaacc cggatgccac
     1321 tacagaagat gtgctgcgca aagcccccgg tattaccatc gaaaacgggc aggtgaccgc
     1381 ccagggcgaa caggttcgac gcattaccat cgacggccgc cagtattttg gcgatgatgc
     1441 caccgccgcc ctgcgcaacc tgccggctga actgattgat aagatccagg tttttgaccg
     1501 actgagcgac caggcacagc tgaccggctt tgatgacggc agcggctata aagccatcaa
     1561 cattgtgacc aaagccaaca tgcgcaacgg ccagtttgga cgggtatacg gcggctatgg
     1621 taccgacgac cggtatgcgg cgggtggcag tgtcaatttt ttcaagaagg atacacgggt
     1681 caacctgatc ggtcttttca ataacgtgaa ccagcaaaat ttctcgggtg aagatttgct
     1741 gggagtgaac ggacaggcca acaaccaggg gcgtggcggc ttccagggtg gtggcggcgg
     1801 cggcggacgt ggcggtggcg ggccccaggg taatttcggc ggtggccgtg gcggcagctt
     1861 ccaggtagga cagcaaccgg gcattgccac tacaaacgcg tttggggtga acttcagcga
     1921 cctgtggctg aaaaagaaaa tggaagtatc ggccagctat ttcttcaaca acagcaaaac
     1981 gattgccgac cgcgaaacaa accgcgaagt gtttttgccc ggcgatacca gccagtttta
     2041 caacgaaaag aacaactcgg ttaccaccaa ctacaaccat cgattcaact tcaggggcga
     2101 atacaaaatt gacagcaaca acacgctgat ctttgcgccc aacctgagtt ttcagtcgaa
     2161 tgaatttgac aaccgtttgg tgggcgtgaa caataccgct accaatgctt tgatcaacgc
     2221 caccatcaac gatcggaata cgaaatcaga aggcttcagt ttccgcaacg aaatgaccta
     2281 ccggcgctcc tttgcgaagc gtggcaggtc ggtttctgtc aacctcaaca acaacattaa
     2341 tgaccgaaac agcgatacct atctcgatgc gatcagcagt ttcttcaaga ccggcttcct
     2401 ggtaaatgat acgctgcgcc agtttaccga caacacaacc aagagcaaca gcatttcaac
     2461 caatattgcc tatacagaac cggttggcaa aaaagggcag ctacaattga actacaaccc
     2521 gcagtggacc cgcaaccagg ccgatcagaa gaacctgcgg tttgataagg tagcacagga
     2581 atacaatatc ctggataccg cccagaccaa tattttcgac aacaaagtgc aggcgcaaag
     2641 tactggtctt acctatcgcg ttggcgatcg ggaaagccag ttttctgtgg gcatcaacta
     2701 ccagtccacc cggctcctca gcagccaatc ctttcccaaa gtggcgtcgc tcgataagac
     2761 cttttccaac tggcttccca acctgcagtg gcgcaagcaa ctgaacaagc aaaccaacct
     2821 gcgtttgttc taccgggcat cggtcaatcc gccatcggtg aaccagttgc agaacgtgta
     2881 caatatttcc aaccctttgt ttattaccac tggtaacccc ttcctggatc agagttatac
     2941 gcatttcttc aatgcccgcc tcagcagcac caacacaaca aaaggccgca gcatgtttgc
     3001 aggcatattt gcacaggcgg tcaatgattt tgtaaccaat ggcacatggg tggcagcgca
     3061 ggattctgta ctggaaaaag acattgtgct gcgcaaggga tcgcaactga gcaagcctgt
     3121 gaacctcgat ggctattaca gtgtacgttc cttcttcaac tatggttttc ccataaagcc
     3181 cattaaaagc aacctgaacc tgaatgccgg tgtcaattat acccgcaccc ccggagccat
     3241 caacgatgtt gtgaactaca gcaacaacta cgcatacaca ctgggggtaa atgttgccag
     3301 caacatcagc gaatacatcg acttcaacat cagttattca ggcaatttca ataacgtggt
     3361 caatagcatc aggccggagt tgaacaaccg cttttacttc cacaatgcag gtgtcaaagt
     3421 caatgtcctt tccaaaaacg gttggttcct gctgaacgac ctgaacaacc agatctattc
     3481 cggcctggcc gatggcttta accagaattt ctggttgtgg aatgtgagtg ccggtaaaaa
     3541 gttcctgaaa aagcaacgtg gcgaattgaa gctgtctgta tttgatttgc tgaaccagaa
     3601 ccaaagcgtg gtgcgcaatg tgggcgaaac atttattgaa gacgtacaga cagttgtttt
     3661 gcagcagtat ttcatgctca cgtttacata taccctccgg aatttcggac aagcggcaaa
     3721 aaatggtaag ggcgaaaacg gtaccttgca gcgccgctga ttgttgcggt gtaatccgat
     3781 tatctaccac gtgattgaac aggaacttat tgagcgattg aagcagggtg atcaggaggc
     3841 atttcgcttc atggttacct cgtggcagga tatggtatat aatacgtcgc ttgggctggt
     3901 gcagaacgaa atggacgccg aagatgtgac ccaggaagtg tttgtaaaag ccttcgaatc
     3961 catccagggt tttaagggtg aatccaaggt gagcacctgg ctgtaccgga tcaccgttac
     4021 caagagcctg gactttttgc ggagcaagaa gcggaaaaag cgtttcgggt atgtttatag
     4081 tttgtttggc cccgacaacg aattgtccat caatccgccg gagtttgttc atccgggggt
     4141 agtttctgaa aagaaacagg tggccgccgc cttgtttaaa gctttggacc agttgcctga
     4201 acaacagcgg gtagcatttg tactgaccag gctggaaggg ctgggtcaca aggaggtgag
     4261 tgaggttatg ggcaacacgg ttccggcggt ggaaagcctg ttgcaaaggg ccaaaacaaa
     4321 cctaaaaaag caattaacag aattctatcg tcagaatttg gaataaacaa cgtcaaagta
     4381 ttggaaccac gcaaccaacc ttattaatat gaacaaagat tcaaacatgc agcaatgggt
     4441 agatggtgcc ctcgaaagca ttgatggatt gccccgggca caggccaacc ccttcctgtt
     4501 tacccgcatc caggagcgtt tgcgccagcg caacagtcct tgggaaaaag tggcctcttt
     4561 tgtggcccgc cccgcttttg ccgttgctat agtcgtggcc ttcctgtctg taaacctcta
     4621 tgtagccaac cgccaaaaag aggaaagact ggcccgggaa aagcaaacca acgaacaaat
     4681 gttcgccgcc gagtacaata ccggcagctc tttgcaaaat gaactgctcc ccaacagatg
     4741 atgaacacag gaaacaacaa caagatatta ctcagcctgc tggtactcct gctgcttacc
     4801 aacgtgggca tgctctggta tttcacccgg gaagaaaaaa ttgaggccaa gcccgtaacc
     4861 cgaaccgagc ggatggccgc catggtgcag cgggagctgg gccttaccga cgaacagaag
     4921 caacagtaca ttgcattgcg tttaaaacgc gattcgctgc tggcgccact gaatgccgac
     4981 ctgcgggccg cgaaaattga gatgatcaac ctgctgaaac aggacggagt accggacagt
     5041 atggtacagg cggtggcagc aaaaattgcc gccaaacagg tacctattga aatggaattt
     5101 tacaagcatt tcattcgcgt aaaggccatg tgccagccac aacagtatgg cccactcgac
     5161 agcttgctca accgcatggt gcggcgcaat accggcgata cgaccgttcc ctcttccaat
     5221 tgattcgaaa aaacagcaat aataaaaagg ctcccgacgg gggccttttt tgcatccggg
     5281 cacagccggc ggtttggcaa aattcaccta cctttttgca cttcaaaaaa atgggtatga
     5341 aatttcaata cctgctggca ttagcattac cggtttgcat caacaagggg caggcacagg
     5401 ctgccatgaa aagactcgat ccggtgggct tcgaaaaagt agagatcgtc gacgatttct
     5461 ggaagccaaa aatcgacaag gttgccacca taaccctcga agcctgcata taccagacgg
     5521 ctgtgaaaac accccgcatc cggaactttg aaaaagtggc ccgtggcaaa ggcgaaccac
     5581 acgaaggcat tttttatgac gactccgatg tgttcaaagc cattgaagcc atggcctatg
     5641 ccatacagtc gaaagccaat ccgaaactgg aggcaatagc ggatgaatgg attgataaaa
     5701 tagcagcggc acaactgccc gatggttatc tgaacacctg gtataccctc aaagggctcg
     5761 accagcgctg gaccgatatg agcatgcacg aagactacaa tggtggccat atgatagagg
     5821 ccggcgtggc ttattaccag gccactggca aaagaaaatt gctggatgtt tgcatcaaat
     5881 gggccgatca tttcgacagc ctgtttggac ccggcaaacg ccattgggtg accggccacc
     5941 aggaactgga actggccttg gtgaagttgt acaaagtgac caacgataaa aaatacctgg
     6001 acctggccga ctggctgctg ggcgaacggg gacatggttt tgccaaaggc tacacatgga
     6061 ccgattggaa agacactgct tatgcgcagg atgtagtgcc ggtaaagcag caatctgaaa
     6121 ttaccggcca tgcggttcgt gccatgtaca tgtacacagg cgcagccgat gtggcggcgc
     6181 aaacgggcga ccaggcatac atgcaggcaa tgcgccgggt gtgggaggat gtggtgtacc
     6241 gcaatatgta catcacgggt ggcattggtt cctcgggcag caatgaaggg ttcagcaatg
     6301 attatgattt gcccaatgaa caggcctact gcgaaacctg tgcttctgtt ggcatggtat
     6361 tttggaacca gcgcatgaat gcgctgaccg gcagcagcga atacatggat gttctggaac
     6421 gggtgcttta caatggcgcc ctcgatggcc tcagcatgag cggcgaccgg tttttctatg
     6481 gcaatccttt ggcaagtgat ggcaggcact ttcgccgcga atggtttggt accgcctgtt
     6541 gcccttccaa cattgcaagg cttgtggctt cgttgggcaa ttacatttac gcccacaccg
     6601 aaaaggattt gtacgtgaat ctttttgtgg gcagccgcac acagttgaca ttgaacaatg
     6661 cagcggtgaa cgtttcgcag caaacggatt acccgtggaa tggcaaagtg caaatagcca
     6721 ttgatcccgc caaagccaca cagtttgccg tgcgcattcg cataccgggt tgggtggagc
     6781 gcaaagcggt gcccggcgat ctttacaaaa tggaagacgg cgctgcgctg gttggcttta
     6841 cggtgaatgg cgttggcgtt gcttacaagg agatcaacgg gtatgccgtg attgacaggg
     6901 cctggaaaaa gggagatgtg ctcagctttg aatatgccat gccggtgacg aaggtggtaa
     6961 gcagggcaga agtgaaacag aacgaaggcc ggatagcctt gcaacgaggg ccactggtgt
     7021 actgcgttga aggggccgac aataatggca ctgcctggga tttcattgtg cctccggcca
     7081 cggttttcga aacaatggaa taccgggtgc ttgatgaaaa ggtaatggcc atcggcatga
     7141 aagtgccggc actttccgtc agcagcgatg gcacccgggt tcagacagtt gaaaagcgca
     7201 taacagccat accgtattat gcgtgggcca accgcggtaa aaatgaaatg caggtttggc
     7261 tgcctgccag ttttcaaaac atcaagatca accgatagac tatgagtgct caaccgatgc
     7321 gccaacgggc atggatggca ttgtgcctgc tgctgctgac acaaatgttg ccagcacaaa
     7381 cccgccaatg gaccgcccaa caggccaatg aatggtatgc caaaacgggc tggcattgtg
     7441 gcgccaattt cctgcccagc acggccatca accaactcga aatgtggcag gccgaaacct
     7501 gggatcctgt caccattgac cgcgaactgg gttgggccga aaaccttggg atgaacgtaa
     7561 tgcgggtgta cctgcacgac ctggcgtgga aggctgatcc cagcgggttc cttcagcgca
     7621 tggatgattt cctgggcata gccgccaaac accatattcg catcctgttt accatcttcg
     7681 atgattgctg gaaccctgat gcggcaatag gccggcagcc cgcaccgata ccgggggtgc
     7741 acaacagtgg ctgggtgcgc agccccaaca aagccatgca tgatgacacc actacttatt
     7801 cgcagttgga gccttatgtc aaggcagtgc tgcaacgctt caaaaatgat gagcgggttt
     7861 ggttgtggga tttgtacaat gagcctgcca atagcgggta cgggctcagt tcatttccat
     7921 tgttgaaaaa agtgtttcaa tgggcgtggg acgttcgccc gtcgcagccc gtaaccgccg
     7981 gggtatggtt tgctgaatac cccgccatca acgctttcca gttacagtac tctgatgtca
     8041 tcacttttca caattacaac gatacggtgt ccatgaagtc ggccattgac tcgctgcaaa
     8101 aaagaggccg cccagtgata tgcaccgaat acatggcccg caccaacaac agccgctttg
     8161 aaacgcatct gcctttgctg aaacgctacc aggtatcggc catcaactgg ggcctggtaa
     8221 gcggaaagag caataccatt tttccctggg gcagcaaaga aggcacaccc gaaccagcct
     8281 tgtggtttca tgatgtattt cgaaaagacg gtacaccatt cagcgttgca gaaatacaag
     8341 tgatcaaaaa agtaaacggc attcaataac ggcatccatt caaatccaat tccatgcaaa
     8401 aaattctctt gctcgtgggg ctgatggca
//
LOCUS       DATIQF010000712         2325 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_254423,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000712 DATIQF010000000
VERSION     DATIQF010000712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2325)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2325)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2325
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254423"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..186)
                     /locus_tag="VLL95_12170"
     CDS             complement(<1..186)
                     /locus_tag="VLL95_12170"
                     /inference="COORDINATES: protein motif:HMM:NF024252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSR39663.1"
                     /translation="MSFAGKNFKYLRKLRGWTQEDFANKLGIKRSLIGAYEEERAEPR
                     LDILENVCSIFKLSLEDV"
     gene            315..1094
                     /gene="surE"
                     /locus_tag="VLL95_12175"
     CDS             315..1094
                     /gene="surE"
                     /locus_tag="VLL95_12175"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HSR39664.1"
                     /translation="MSSNNNSLPTILITNDDGITAPGIRHLIEAVKDLGRLIVVAPDK
                     PQSGMGHAITIGHPLRMNQVSIFEGIEAWQVTGTPADCVKLAVDKLLHRKPDLCLSGI
                     NHGANHAINVIYSGTMSAAMEAAIEGIPSVGFSLMDFSMEANFDAARHIVRTIVMKLL
                     QGENDRHLLLNVNIPKVDLDLIAGIKICRQAYAKYQEDFDERVDPHGRKYFWLTGEFV
                     NMDSGEDTDVWALDNNYVSVVPISIDFTNYTLKKQLEAKWQ"
     gene            1085..1390
                     /locus_tag="VLL95_12180"
     CDS             1085..1390
                     /locus_tag="VLL95_12180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39665.1"
                     /translation="MAIGVLKKNSLKFGLVLGLLVPLLGVVIYYYWKIAPNSWNAFFQ
                     YLKIEKRLLSSLTVVCLLLNVGVFTYYVNTKKDETAKGIFAITLLYGIVSLLVRFFG"
     gene            1483..>2325
                     /gene="lpxB"
                     /locus_tag="VLL95_12185"
     CDS             1483..>2325
                     /gene="lpxB"
                     /locus_tag="VLL95_12185"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: protein motif:HMM:TIGR00215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HSR39666.1"
                     /translation="MKYYVIAGEASGDLHGSNLLKEIKLLDTQAQFRCWGGDKMEAQG
                     ATLVKHFRDLAFMGFAEVLMNLRTILQNISFCKKDIETWQPDTLILIDYPGFNLRIAK
                     WAKAKGLKVIYYISPQVWAWKENRVKMMRECIDLMMVILPFEKAYFKDKWNWEVHYVG
                     HPLVRTIDEFVPRIQSFGEKPVVAVLPGSRKQEISVKLPVMLQVSAHFPQYQFIVAMA
                     PGTDENFYKPFIAAYPNVSCVSGLTYDLLKVAKAAMVTSGTATLETALFGVPEVVCYK
                     GNPIS"
BASE COUNT          610 a          542 c          585 g          588 t
ORIGIN      
        1 tacatcttcg agtgacagtt tgaaaatgct gcaaacattc tccaggatgt ccaaccgggg
       61 ctctgccctt tcctcttcat aagcgccaat aagcgaacgc tttatgccca gcttgtttgc
      121 aaagtcttcc tgggtccatc ccctgagctt tctcaggtac ttgaagtttt taccggcgaa
      181 actcattgct attcgttttg gcaatattac taaatatttt ggctttcaaa ataatttttt
      241 taggatgatt tcatttccgg ccacccgggc aatgtaacgt tgctggccgc acccaattac
      301 atttgcagcc tattatgtct tcgaacaaca actcgcttcc taccattctc attaccaacg
      361 atgatggtat taccgccccc ggcatccgtc atttgataga ggcggtgaaa gaccttggcc
      421 gattgatagt ggtggccccc gacaaaccac agagtggcat gggtcatgcc atcaccattg
      481 gccacccgct gcgcatgaac caggtcagca tttttgaagg aattgaagcc tggcaggtaa
      541 caggcactcc ggccgattgt gtgaaactgg ccgtagacaa actgctgcac cgcaaacccg
      601 atttgtgttt aagcggcatc aaccatggcg ccaaccatgc catcaatgtg atatacagcg
      661 gcaccatgag cgccgccatg gaagcagcca ttgaaggcat cccttctgtg ggcttcagcc
      721 tgatggactt cagcatggaa gccaactttg atgcagcccg tcatattgtg cgaacgattg
      781 tgatgaaact actgcaggga gaaaacgacc gccacctgtt gctgaatgtg aacatcccga
      841 aagttgacct ggatttgatc gccggcatca aaatttgccg acaagcgtat gccaaatacc
      901 aggaagattt tgatgaacgc gtcgacccac atgggcgcaa atatttttgg ctcaccggtg
      961 aatttgtgaa tatggacagc ggcgaggaca cggatgtatg ggcgctggat aataactatg
     1021 tgagcgttgt gcccatatct atcgacttca ccaactacac tttgaaaaaa cagctggagg
     1081 caaaatggca ataggcgtat tgaagaagaa ttcattgaag tttggattgg tgctgggatt
     1141 gttggtgcca ttgctgggtg tggtgattta ttactattgg aagattgccc ccaattcgtg
     1201 gaatgcattt ttccagtatt tgaaaattga gaaacgcctc ctcagcagcc tcactgtggt
     1261 ttgcctgctg ttgaacgtag gcgtatttac gtactacgtg aataccaaaa aggatgaaac
     1321 agccaaaggg atctttgcca tcacgctgct gtatggaata gtatcgttat tggtgaggtt
     1381 ttttggctga tagcagcagg ccgtggaagt gtgcgacgcc aatgaagatg agtgtagcac
     1441 cgctgcccgg acaatcatta aaaaaatgtc tcaactggcc ccatgaaata ttatgtaatt
     1501 gcaggcgaag cctccggaga cttgcacggc agtaacctgc tgaaagagat aaagcttctg
     1561 gatacgcagg cacaattcag gtgctggggt ggcgacaaaa tggaggcaca gggagccacg
     1621 ctggtaaagc attttcgcga tctcgccttc atgggttttg ctgaagtgct catgaacctg
     1681 cgcaccattc ttcaaaacat cagcttctgc aaaaaggata tagaaacctg gcagccggac
     1741 acgctgatcc ttattgatta cccgggtttc aatttgcgca ttgccaaatg ggctaaggca
     1801 aaaggtctga aggtgatcta ttacatatcg ccgcaggtat gggcctggaa agaaaaccgg
     1861 gtgaaaatga tgcgggaatg cattgacctg atgatggtga tattgccttt tgaaaaagcc
     1921 tacttcaaag acaaatggaa ttgggaggtg cattatgttg ggcatccgct ggtgagaacc
     1981 attgatgaat ttgtaccccg cattcaatcc tttggcgaaa aacccgtggt ggccgtattg
     2041 cccggcagcc gcaagcagga aatatcagtg aagctgccgg taatgctgca ggtaagtgcc
     2101 cattttccgc aataccagtt tattgtggcg atggcgcccg gcacggatga aaatttctac
     2161 aagcctttta tcgctgccta ccccaacgtg agttgtgtaa gcggcctcac gtacgacctg
     2221 ttgaaagtgg ccaaagctgc tatggtaacc agcggtactg ccacactgga aaccgctttg
     2281 tttggcgtac cagaggtagt atgctacaaa gggaatccca tcagc
//
LOCUS       DATIQF010000713         1923 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_117941,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000713 DATIQF010000000
VERSION     DATIQF010000713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1923
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117941"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1686
                     /locus_tag="VLL95_12190"
     CDS             <1..1686
                     /locus_tag="VLL95_12190"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR01349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004738 - pyruvate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0004742 - dihydrolipoyllysine-residue
                     acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex dihydrolipoamide
                     acetyltransferase"
                     /protein_id="HSR39667.1"
                     /translation="MAEVIKMPRLSDTMTEGVIAAWHKKVGDPVKKGELLAEVETDKA
                     TMELESYKDGTILHLGAPAGGKLQVDDLLVIVGNAGEDISALLAGAAAPAAAATAAPA
                     PTPEPVAAAPAAAAAAPALDLAAIEEVVLMPRLSDTMTEGVIANWVKKVGDAVSKGDV
                     LAEIETDKATMELESYKNGVLLYQGAKAGDKIQVNDLLAIIGPADFKIDEIVAAAKSG
                     VTAAPAAAQPVEAAPAAAAVVAAPAPAATAAPEVVNTGRILASPLAKKLAADKGIDLR
                     YVKGTGDNGRITKSDIDNYVPAAAAAPVAAAAPAAAPAAAAEVAPAATVAPFVPGGAG
                     EGYTDTANSQMRKVIAKRLSESKFTAPHFYLKMEINMDNAMAARTKLNDISPVKISFN
                     DMIIKASAMALKKHPAVNSSWMGDFIRTYQHVHIGMAVAIPDGLIVPVIRFADQKTLS
                     QIAAEAKELGGKAKSKKLQPNEFAGNTFTISNLGMMDIDEFTAIVNPPDSCILAVGKI
                     KEEVYRNEKGEFAVRNIMKLTLSCDHRSVDGAVGAAFLQTLKAYLENPVTMLV"
BASE COUNT          483 a          513 c          533 g          394 t
ORIGIN      
        1 atggccgaag taataaaaat gccccgactg agtgatacca tgaccgaagg cgttattgcc
       61 gcatggcaca agaaagtggg cgatccggtg aagaaaggcg aattgcttgc cgaagtggaa
      121 accgacaaag ccaccatgga attggaaagc tataaggatg gcaccatttt gcacctgggt
      181 gcccctgccg gtggcaaact gcaggtggac gatttgctgg tgatcgttgg caatgccgga
      241 gaagacatat cggccttgtt ggctggcgct gctgcccctg cggctgctgc gacagctgct
      301 cccgccccaa ctcccgagcc tgtggctgct gctcctgctg ctgccgctgc tgctccagcc
      361 cttgatttgg ccgctattga agaggtggtg ctgatgcccc gcctgagcga taccatgacg
      421 gaaggagtga tcgccaactg ggtgaaaaaa gtgggagatg ccgttagcaa aggagatgtg
      481 ctggcagaaa ttgaaaccga caaagccacc atggaactgg agagctacaa aaatggtgta
      541 ctcctgtacc agggcgctaa ggctggcgac aagatccagg taaatgatct gctggccatc
      601 attggcccgg ccgatttcaa aattgatgaa atagtggcgg ctgccaaatc gggtgttact
      661 gctgctccgg ctgctgccca acccgttgag gctgcacccg cagctgccgc agttgttgct
      721 gcgccagccc ctgctgccac agcagctccg gaagtggtga acacaggccg catactggcc
      781 agccccctgg ccaaaaaact ggccgcagac aaaggcatcg atctccgcta tgtaaaagga
      841 accggtgaca atggacgcat caccaaatcc gatattgaca attatgtgcc tgctgccgca
      901 gcggctcctg ttgctgcagc tgctcctgcc gcggctccgg ctgctgcagc cgaagtggca
      961 cccgcagcta ccgtggcgcc atttgtaccc ggcggtgcag gcgaaggata taccgatacg
     1021 gccaacagcc aaatgcgcaa agtgattgcc aagcgtctca gcgaaagcaa gttcaccgca
     1081 ccgcatttct atctcaaaat ggagatcaac atggacaatg ccatggcggc acgtaccaag
     1141 ttgaacgaca tcagcccggt gaagatcagt ttcaacgata tgatcatcaa ggccagcgcc
     1201 atggccctga aaaagcaccc ggcggtcaac agcagttgga tgggcgattt catccgcact
     1261 tatcagcatg tgcacattgg catggccgtt gccattcccg atggactgat cgttccggtt
     1321 atccggtttg ccgatcagaa aacgctgagc cagattgccg ccgaagccaa ggaactgggc
     1381 ggaaaggcaa agtcgaaaaa gctgcagccc aatgaatttg ccggcaacac tttcaccatc
     1441 agcaacctcg gcatgatgga catcgatgaa ttcaccgcta tcgtgaatcc tcctgacagc
     1501 tgcatactgg cagtaggcaa gatcaaagag gaagtgtatc gcaatgagaa aggtgaattt
     1561 gcggtgcgca acataatgaa gcttaccctg agctgcgatc accgcagtgt ggatggtgcc
     1621 gttggtgccg cttttctgca aacgctgaaa gcctacctgg agaacccggt aaccatgctg
     1681 gtgtaatgca aacgcaaaaa atctagattc tgaataacgg ccggatggac atccggcctt
     1741 ttttgtgact ggtgtttttt atcggagagt acgacatctg tcaggttttg catttgcaca
     1801 aatggctaat ttgcctgcta ctaaactgca cagtatgaaa aaaatgcact tatggctggc
     1861 cgcatcgctg ttgctggccg catgcggacc ttcaatagac ccggaagcat acctggaaga
     1921 acg
//
LOCUS       DATIQF010000714         2189 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_56989, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000714 DATIQF010000000
VERSION     DATIQF010000714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56989"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..233)
                     /locus_tag="VLL95_12195"
     CDS             complement(<1..233)
                     /locus_tag="VLL95_12195"
                     /inference="COORDINATES: protein motif:HMM:NF014870.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39668.1"
                     /translation="MSDKQQMLIPSPLGDILLETDGSAITVVHFCDEPMTVTNADHPL
                     LMQAKSELEQYFAGERQTFSFPMAQTGTDFQQRV"
     gene            complement(230..562)
                     /locus_tag="VLL95_12200"
     CDS             complement(230..562)
                     /locus_tag="VLL95_12200"
                     /inference="COORDINATES: protein motif:HMM:NF007495.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-binding protein"
                     /protein_id="HSR39669.1"
                     /translation="MSISWNDFEKVDMRAGTVLEVQPFEKAKKPAYKLWIDFGELGVK
                     KSSAQITALYQPEDLVGRQVIAVVNFPPKQTADFISECLVLGVYNQNNDVVLLHPSEA
                     VQNGGKVG"
     gene            complement(679..1845)
                     /gene="mqnE"
                     /locus_tag="VLL95_12205"
     CDS             complement(679..1845)
                     /gene="mqnE"
                     /locus_tag="VLL95_12205"
                     /inference="COORDINATES: protein motif:HMM:TIGR03700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HSR39670.1"
                     /translation="MNNTLLTDPSLVSNDAELAHIAEKVNGQQRLTPAKGLYLFEKAP
                     LGWLGALANSVRERRHGHKTYFNRNFHIEPTKVCVFSCKFCSYSRLYKHKEEGWELSI
                     EDMLNIVKKYDGQPVTEVHIVGGVHPKMDMEFFMELLRQIKAHRPDLHIKGFTAVELD
                     YMFRKHKVSVEEGMRLLKEAGLQSLPGGGAEIFAPEVREKICADKVDGEGWLHIHKTA
                     HQLGMHSNATMLYGHIETYAHRIDHMERLRQLQDETGGFNTFIPLKFRNHDNEMSDVP
                     ESTLIEDMKVYAVARLYMDNFPHVKAYWPMLGRHNAQLSLGFGVNDIDGTIDDSTKIY
                     SMAGAEEQSPSMTTEELVALIHQAGRVAVERDTLYNEVKVFDRVAPAITDVSLN"
     gene            1982..>2189
                     /locus_tag="VLL95_12210"
     CDS             1982..>2189
                     /locus_tag="VLL95_12210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39671.1"
                     /translation="MKTRSAAVRFLPVLVTRTSAGYSFTFLGGRFLRSTVNQQPSTNH
                     SFTNFLVRFNPSYSNSRKYNPLGRL"
BASE COUNT          484 a          586 c          544 g          575 t
ORIGIN      
        1 accctttgct gaaaatcggt gccggtttgc gccattggga aactgaaggt ttgcctttcg
       61 ccggcaaagt attgttccaa ttcgctcttt gcctgcatca gcaacggatg atccgcattg
      121 gtcaccgtca tgggttcatc acaaaaatgc accaccgtga tagcactgcc gtcggtttca
      181 agcaggatgt ctcccagcgg agagggtatc agcatttgtt gcttgtcgct catcctacct
      241 tccctccatt ttgaacggct tcactgggat gcaacaacac cacatcgttg ttttgattgt
      301 atacgcccag caccaggcat tcgctaatga aatcggcagt ttgcttcggc ggaaaattga
      361 ccacggcaat cacctgacgg cctaccaaat cttccggctg gtacaaggcc gtgatttgtg
      421 cggaagattt tttcacgccc agctccccga aatcgatcca caatttgtac gccggctttt
      481 tagccttttc aaaaggctgc acttccagca cggtgccggc ccgcatgtcc actttttcga
      541 aatcattcca gctgatgctc ataccattgt ttactgccgt gaaactaatg gataatgcgt
      601 gttcattatt accactggta caaaagaaaa tgcctgcgca gtaagaaacc gcacaggcat
      661 tgccaggaaa aattgtaatc aattcaacga cacatcagtt atagcaggcg ccacgcggtc
      721 aaacaccttc acttcgttgt acagggtgtc gcgttctact gctacccggc cggcctggtg
      781 aatgagggcc accagttctt cggtcgtcat actgggactt tgttcttcgg ccccggccat
      841 gctgtagatc ttggtgctgt cgtcgatggt gccgtcaata tcattcacgc caaagcccag
      901 gctcagttgc gcattgtgac ggcccagcat tggccagtac gcttttacat gcgggaagtt
      961 gtccatgtac aaacgggcca cggcatacac tttcatgtct tcgatgaggg tgctctccgg
     1021 cacatcgctc atttcattat cgtggttgcg aaacttgagc gggataaagg tgttgaagcc
     1081 accggtctcg tcctgcaact ggcgcagcct ttccatatgg tcaatgcggt gcgcataggt
     1141 ttcgatgtgg ccgtacagca tggtggcatt gctgtgcatg cccagctggt gtgccgtttt
     1201 gtgaatgtgc agccatcctt cgccatccac tttgtcggca cagatcttct cccgcacttc
     1261 gggagcaaaa atttcagcgc cgcctccggg caatgattgc aggccggctt ctttcagcag
     1321 gcgcatgcct tcttccacac tcaccttgtg cttgcggaac atgtagtcca gttccaccgc
     1381 cgtaaatcct ttgatgtgga ggtcaggacg gtgggctttg atctggcgga gcagctccat
     1441 gaaaaactcc atgtccattt tgggatgcac gccgcctaca atgtgcactt cggtcaccgg
     1501 ctgcccgtcg tatttcttca ctatgttcag catgtcttca atgctcagct cccagccttc
     1561 ctctttgtgc ttgtacaggc gggagtaaga gcaaaacttg caactgaaca cacacacttt
     1621 ggtgggttca atatggaagt tgcggttgaa ataggttttg tgtccatgcc tgcgttcacg
     1681 aacactgttg gccagggcgc ccagccagcc cagcggggct ttttcaaaca ggtacaggcc
     1741 tttggcaggg gtcaggcgtt gttgcccgtt taccttttca gcaatgtggg ccagttcggc
     1801 atcgttcgac accagggatg gatcagtcag cagcgtattg ttcataatgg atgattcttc
     1861 aataaagtgc acaaaagtag ccaaatcaac acggcgaaat tcctgatgtt catcagttgg
     1921 ggaattataa cagggtggca acggaacaaa tgtaaaattg agaaagtgag tgtgccggcg
     1981 gatgaagaca aggtcagctg cggtgcgctt ccttccggtg cttgtgacac gcaccagtgc
     2041 tggttacagc ttcacctttt tgggtggacg cttccttcgg tcaactgtca accaacaacc
     2101 gtcaaccaat cacagcttca ccaatttcct ggtccgcttc aatccatcat attccaattc
     2161 gaggaaatac aatcctttgg gcaggctgg
//
LOCUS       DATIQF010000715         3212 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_87264, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000715 DATIQF010000000
VERSION     DATIQF010000715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3212
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87264"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..611
                     /locus_tag="VLL95_12215"
     CDS             <1..611
                     /locus_tag="VLL95_12215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39672.1"
                     /translation="EPNYVKHFNLVGFQSYFVNPNLLETIDKLRFDCYRVGKVQEKLE
                     EVEPSMRSSHLVSFDISALAHAYAPVNSLSPNGFTGQDACKLMQYAGMSTANRVCGVH
                     GFGGKDVHGLTAMQVAHMIWYFIDGMQKQLHESPLQDRSAYNEFHTICAEVDTLFLQS
                     RNTGRWWMQLPDHSFIPCTHTDYVIASHNDLPERWLRAQERL"
     gene            683..2932
                     /locus_tag="VLL95_12220"
     CDS             683..2932
                     /locus_tag="VLL95_12220"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HSR39673.1"
                     /translation="MSHLPLLITDLALILGAAGVITVLFRRLKQPMVLGYVLAGLLVG
                     PYFPLFPTVSDLEGVKIWAEIGVIFLLFSLGLEFSFKKLAKVGASAGITGIIEISLMT
                     LVGFTTGKALGWPLMDCLFLGGIIAISSTTIIFRAFEELGIKTQQFTSLVLGVLIIED
                     IVAVLLMVLLSTMAVSLEFEGTEMLLALGKLLFFLSLWILLGIFLLPSLLKKASRWLS
                     SESLLIVALGLCLGMVVLASNIGFSAELGAFVMGSVLSETVYGEKIQHMLAPVKNLFG
                     AVFFVSVGMLIDTKVLWQYIGPVLLLSSLVIAGKFLFVSTGALVSGRTLKQSVQAGTA
                     MTQIGEFSFIIATLGVSLKVTSSYLYPIAVGVSVLTTFTTPFLIKLADPLHRKLTTVL
                     PARWQEMLNQYSAGSQVLKSESEWKKFIGAYGQLMFVNSVFCIAAIMLSRYLLKPFLA
                     GLLENNTLASVLSVIISLAAMTPFIWALTMKKIEGNAYKILWLNNKYNRGPLVSLEIL
                     RNLLAVVFTGLLIGQYFSLRLTMLGTFLVLVVVLLIFRQRLQRFYHILEHRFLHNLHD
                     KERMESQHQGLVPWDAHLTNSRISASCTFIGRTLEELQLREQFGVNIAFIKRGNRLIY
                     APSRFEKLYPYDEVGVIGTDVQLKHFNALLESEADEVSTVDVDSEEIVLEKIIVDETN
                     QLRGQTIRNSGIREKTKGLVVGIERSGERLLNPASDTVFEWEDIIWLVGDRRKINANF
                     IKHTDHHTS"
     gene            complement(2945..>3212)
                     /locus_tag="VLL95_12225"
     CDS             complement(2945..>3212)
                     /locus_tag="VLL95_12225"
                     /inference="COORDINATES: protein motif:HMM:NF014171.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TrkA C-terminal domain-containing protein"
                     /protein_id="HSR39674.1"
                     /translation="MIPDVQEFLSMLSTSYNDRFQVAELEIREAINLGELNLWQTTGC
                     NVIGVKQTDGKYRRNPQPDYIALKGERLIVMGSKAVIDKARALL"
BASE COUNT          713 a          786 c          839 g          874 t
ORIGIN      
        1 gtgaacccaa ctacgtaaaa catttcaacc tggtgggctt ccagagttac ttcgtcaatc
       61 ccaatttgct cgagaccatt gataagcttc gctttgattg ctaccgggtg ggcaaggtgc
      121 aggaaaagct ggaagaggtg gaaccttcca tgcgttcgag ccatctggtg tccttcgata
      181 tcagtgccct ggcgcatgct tatgcaccgg taaattcctt gtcgcccaac ggctttaccg
      241 ggcaggatgc ctgcaagctg atgcaatatg ccggcatgag cactgccaac cgggtatgcg
      301 gtgttcatgg ttttgggggc aaagatgtgc acggccttac cgctatgcag gtagcccaca
      361 tgatctggta ttttatcgac ggcatgcaga aacaactgca cgaaagcccg ctgcaggata
      421 gaagcgccta caatgaattc catacgattt gtgcagaggt ggatacgctt tttttacaaa
      481 gccgcaatac cggtcgctgg tggatgcaat tgcccgatca ttccttcatt ccctgcaccc
      541 ataccgatta tgtaattgcc agccacaatg acctgccgga acgctggctg cgtgcccagg
      601 aaagattgta gtgcatttaa acctgtttcc tgttgcgggg gtctttaacc tcccatttca
      661 cccgtgctgt ttatttttgg gcatgtcgca tttgcccttg ctcattactg acctggcatt
      721 gatactgggt gccgccggcg taatcaccgt gttgtttcgt cgcctgaagc aaccgatggt
      781 acttggctat gtgctggcag gcttgctggt gggtccttat tttccattgt ttccaacggt
      841 ttccgatttg gaaggggtca agatctgggc agagatcggg gttatcttct tgttgttttc
      901 gctggggctg gaattcagtt tcaaaaagct ggccaaggtg ggcgcatctg ccggcattac
      961 cggcatcatt gaaatatcgc tgatgaccct ggtgggattc accaccggta aggcactggg
     1021 ctggccactg atggactgtc ttttcctggg tggcattatc gccatttctt ccactaccat
     1081 catcttcagg gcttttgaag aactgggcat caaaacccaa caatttacca gcctggtgtt
     1141 gggggtactc atcattgaag acatcgtggc ggtgctgttg atggtactgc tgagtacgat
     1201 ggcggtgagc ctggaatttg aaggaacgga aatgttgctg gcattgggca agttgttgtt
     1261 ctttttatcg ctctggattt tgctcggcat tttcctcttg ccctcgctgc tgaaaaaggc
     1321 ttcgcggtgg ttgagcagcg aaagcctgct gatcgtggcg ctgggtcttt gcctgggcat
     1381 ggtggtgctg gccagcaaca ttggattttc tgcagagttg ggagcttttg taatgggttc
     1441 ggtgttgagt gaaaccgtgt atggcgagaa aattcaacac atgctggcgc cggtgaagaa
     1501 tttgtttggc gccgtgttct ttgtatccgt aggcatgctc atcgacacga aagtgctgtg
     1561 gcaatatatt gggccggtac tactgctttc ttctttggtg atagcaggca aattcctgtt
     1621 tgtttccacc ggcgcattgg tatcaggccg aacgctgaaa caatcggtgc aggcaggcac
     1681 cgccatgacc cagattggtg aattttcttt catcattgcc acgctggggg tatcgctcaa
     1741 agtaaccagc agctatttgt acccgatcgc tgtaggggta tccgttctca ctactttcac
     1801 tacaccattt ctcatcaagc tggccgatcc tttgcatcgc aaactgacga ctgttttgcc
     1861 ggctcgctgg caggaaatgc tcaatcaata cagtgccgga tcgcaggtgc tgaagagtga
     1921 aagcgagtgg aagaaattca taggcgctta cggtcagctc atgtttgtca acagcgtatt
     1981 ctgcattgct gccatcatgc tcagccgcta tttgctaaaa ccctttctcg ccggcttgct
     2041 ggaaaacaat acgctggcca gtgtgctttc tgtcatcatc agcctggctg ccatgacgcc
     2101 tttcatctgg gcccttacca tgaaaaaaat tgaaggcaat gcttacaaaa ttttgtggct
     2161 caacaacaaa tacaatcgcg gtccgctggt gtcgctcgaa atactacgca acctgcttgc
     2221 ggtggtgttt accgggcttt tgattggcca gtacttttca ttgcgcctca ccatgctagg
     2281 caccttcctg gtgctggtgg tggtattgct cattttccgg cagcgcctgc agcggtttta
     2341 ccatatcctt gaacaccgtt tcctgcacaa cctgcacgac aaggagcgca tggaaagcca
     2401 acaccagggc ctggttccat gggatgccca cctcaccaac agccgcatca gtgcctcttg
     2461 tacgttcatt gggcgcaccc tggaagaact gcagctgcgg gaacaatttg gtgtcaacat
     2521 cgcatttatc aaaagaggca atcgcttgat ttatgcgcca tcgcggttcg aaaaattata
     2581 tccttacgat gaagtaggcg taattggcac cgatgtgcaa ctcaaacatt ttaacgcatt
     2641 gctggagtcg gaggccgatg aggtctccac ggtggatgtg gactctgaag aaatagtgct
     2701 cgaaaagata atagtggatg aaaccaatca gctgcgcggc caaaccattc gcaatagtgg
     2761 catccgggag aaaaccaaag gacttgtggt ggggatagaa cgttccgggg aacgcctgct
     2821 gaatcccgct tctgacacgg tatttgagtg ggaggatatt atttggctgg taggcgaccg
     2881 cagaaagata aatgccaatt ttataaagca caccgatcac catacgtctt aatgggcatc
     2941 atattcataa cagtgcccga gctttgtcga tgactgcttt gcttcccatt actatcaatc
     3001 gttctccttt cagggcaatg taatccggct gaggattccg gcggtatttg ccgtcagttt
     3061 gttttacgcc gatcacgttg cacccggtgg tttgccacaa attgagttcg cccaggttga
     3121 tggcttcacg tatttccaat tctgccacct ggaaccgatc gttgtacgag gtggacaaca
     3181 tcgacaaaaa ttcctgcacg tcaggaatca tc
//
LOCUS       DATIQF010000716         2433 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_163348,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000716 DATIQF010000000
VERSION     DATIQF010000716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2433
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163348"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            77..1174
                     /locus_tag="VLL95_12230"
     CDS             77..1174
                     /locus_tag="VLL95_12230"
                     /inference="COORDINATES: protein motif:HMM:NF026255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HSR39675.1"
                     /translation="MYAGGGLTFKENRNGWNYTVGAKAQQATLTSVVQGKSEPISQSF
                     FNILPSAQVQIGKNRYRNFRLFYNGSTQNPSVTQLQPIEDISDPLNITKGNPELKQAF
                     INNLRANYSVFDPYTQKSFFLFGNVRQQFNAIVNSDSIGTFGGRVTTFENANGVFNSN
                     LNMSIGMPLNIGQTRANLNFTTGGGYSRNVNYLNKEINEITNLSLSQGVNAFYAFKEL
                     FDFSLGGSVAWNRARYSLQSALNTNFFTYNANAETNIYLPKGFTLGSDITFTANTGRA
                     DGFNQNFWLWNAYLAKSFLKNKRGELRLKAYDMLNQNTGLSRVTTGNYVEDTRYTVLQ
                     RYFMLTFTYNLSKFGSPAGGGPRMMMMGMPR"
     gene            complement(1292..1696)
                     /locus_tag="VLL95_12235"
     CDS             complement(1292..1696)
                     /locus_tag="VLL95_12235"
                     /EC_number="1.20.4.4"
                     /inference="COORDINATES: protein motif:HMM:NF013607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030612 - arsenate reductase (thioredoxin)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HSR39676.1"
                     /translation="MSNKIKLLFVCVENANRSQMSQAFARIHGGDKVEAYSAGSKPSG
                     VVNPKAIAAMKELGYDLTSHDSKSLQEVEPFAPFDAVVTMGCGDACPWMPAKQFIDWQ
                     IPDPKHMEPAQFNEVRDYISGKVKALLQDLGV"
     gene            complement(1725..>2433)
                     /gene="arsB"
                     /locus_tag="VLL95_12240"
     CDS             complement(1725..>2433)
                     /gene="arsB"
                     /locus_tag="VLL95_12240"
                     /inference="COORDINATES: protein motif:HMM:TIGR00832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008490 - arsenite secondary active
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ACR3 family arsenite efflux transporter"
                     /protein_id="HSR39677.1"
                     /translation="ILIGIARCIAMVIVWNDLAGGDRIYAAGLVAFNSIFQVLFYSVY
                     AWLFITKLPPLFGLKGYEVDITIGQVAQSVFIYLGIPFLAGMIGRRLLIQWKGSEWYE
                     NKYLPAISPITLVALLFTIVVMFSLKGKLIVQIPGDVLTIALPLTVYFIIMFFSAFAL
                     SKRAGADYAKSTSLAFTAAGNNFELGIAVAISVFGINSGAAFAAVVGPLIEVPVLILL
                     VQFALKQQSKFTKPSCP"
BASE COUNT          637 a          633 c          598 g          565 t
ORIGIN      
        1 ctgggactac aacaaactca ccggcgctta tgacctgctc aaccagcggc tcaccaactt
       61 tttcgacaac taatacattt acgccggcgg tggtcttact ttcaaagaga accgcaacgg
      121 gtggaactac acagtaggag ccaaggcgca gcaggctaca ctgaccagcg tggtgcaggg
      181 taaatcggag cccatttcgc aaagcttctt caacattttg cccagtgccc aggtgcagat
      241 cggcaaaaac cgctatcgca acttccgcct gttttacaat ggctctaccc agaaccccag
      301 cgttacgcag ttgcagccca ttgaagacat cagtgacccg ctcaacatca ccaagggtaa
      361 tcctgagttg aagcaggctt tcatcaacaa tttgagggcc aactattcag tgttcgaccc
      421 ttacacacaa aaaagtttct tcctgttcgg taatgttcgc cagcagttca acgccatcgt
      481 gaacagtgac agcatcggaa cattcggcgg ccgtgttact acttttgaaa atgccaatgg
      541 tgtattcaac agcaacctca acatgagcat tggcatgcca ctgaacatag gacaaacccg
      601 ggccaatctc aacttcacca ctggtggagg ctacagccgc aatgtgaatt acctgaacaa
      661 agaaatcaac gagatcacca acctcagcct ttcgcaggga gtgaatgcct tctatgcctt
      721 taaagagttg ttcgatttca gcctgggcgg cagcgtggcc tggaaccgtg cccgctattc
      781 attgcaatca gcgctcaaca ccaacttctt tacctacaac gccaatgccg aaaccaatat
      841 ttacctgccc aaaggtttca ccctgggcag cgatatcact ttcaccgcca acaccggtcg
      901 ggccgatgga ttcaaccaga acttctggtt gtggaatgcc tacctcgcca agtctttcct
      961 gaaaaacaag cgtggagaat tgcgcctgaa ggcatatgat atgctgaacc agaataccgg
     1021 cctcagtcgt gtaactaccg gcaactatgt ggaagatacc cgctacaccg tgctgcagcg
     1081 ttacttcatg ctcaccttta catacaacct cagcaagttt ggaagccctg ccggcggtgg
     1141 tcctcgcatg atgatgatgg gaatgccgag ataaaggatt taggaatgat gaattatgaa
     1201 tgaggaatag ggaaagagaa attagatatg taaaaagccg gtgcagtggt tgcccggctt
     1261 tttgcataaa gagtctttac aatgagtggc gttacacgcc aaggtcttgc agcagcgctt
     1321 tcactttgcc gctgatgtaa tcacgtactt cgttgaactg cgccggttcc atgtgtttgg
     1381 gatcgggtat ttgccagtcg atgaattgtt tggcgggcat ccacggacag gcatcaccgc
     1441 aacccatggt cactacggca tcaaaaggag caaatggctc cacttcctgc aggctcttgc
     1501 tgtcgtgtga agtgaggtca tagcccagtt ctttcatggc ggctatggct ttgggattca
     1561 ccacgccact tggcttgctg ccggcgctgt aggcttccac tttgtcgccg ccgtgaatgc
     1621 gggcaaaggc ctggctcatc tggctgcggt tggcgttttc aacgcacaca aaaagtaatt
     1681 tgattttgtt actcatgctt gagaatgatt tttgggaacg ataattaagg acatgatggt
     1741 ttggtgaatt tggattgctg cttcagtgca aattgcacca gcagtatcag cacgggcact
     1801 tcaatgagcg gacctactac ggccgcaaag gcggcgccac tgttgatgcc aaaaaccgat
     1861 atggctaccg caatccccaa ttcgaaattg ttgcctgccg ccgtaaaggc cagcgaagtg
     1921 gatttggcat aatcggcacc ggcccttttg ctgagggcaa aggctgagaa gaacatgatg
     1981 atgaaataca ccgtcagcgg cagcgcaatg gtgagcacat cgccggggat ctgcactatg
     2041 agctttcctt tcaggctgaa catcaccaca atggtgaaga gcaaggctac caacgtaatg
     2101 ggactgatgg cgggcaggta tttgttttca taccattcgg atcctttcca ttgtatcagc
     2161 aaccttctgc cgatcatgcc ggccaaaaaa ggaatgccga ggtagatgaa cacactctgc
     2221 gccacctgcc cgatggtgat gtctacttca tatcctttca gaccaaacag gggcggcagt
     2281 ttggtaatga acaaccacgc atacacgctg taaaacaaca cctggaaaat ggagttgaag
     2341 gctaccaatc cggcggcata aatgcggtca ccaccggcga ggtcgttcca cacaatgacc
     2401 atggctatgc atcgggcaat gccaatgagg ata
//
LOCUS       DATIQF010000717         1934 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_284778,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000717 DATIQF010000000
VERSION     DATIQF010000717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284778"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..545
                     /locus_tag="VLL95_12245"
     CDS             <1..545
                     /locus_tag="VLL95_12245"
                     /inference="COORDINATES: protein motif:HMM:NF012920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HSR39678.1"
                     /translation="GESYLAKRRKLKMGADRSASIQFVPVKAAAGYLAGYNDPEFIDE
                     LNTFTLPMLGPGEYRAFEIIGDSMLPTPSGSVIVGEKVEDMESVKSNDAYIVVSRNDG
                     IVYKRIQKAPKTKATLTLVSDNPNYPPYTVNADEVAEIWKAQMVLSRPQEKPVWDVNQ
                     LASVVNTLQQQVSSMQKKAN"
     gene            complement(625..1674)
                     /gene="queA"
                     /locus_tag="VLL95_12250"
     CDS             complement(625..1674)
                     /gene="queA"
                     /locus_tag="VLL95_12250"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: protein motif:HMM:NF001140.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HSR39679.1"
                     /translation="MKLSQFKFDLPLNLIAQNPLKRREDSRLLVVNRKTGNMEDRHFY
                     EIMDFFNDKDVFVVNNTKVFPARMYGRKEKTGAKIEVFLLRELNRPNRLWDVIVDPAR
                     KIRVGNKLYFGDNDELVAEVIDNTTSRGRTIKFLWEESEESFRQMLDFLGETPLPKYI
                     KRKPDETDKERYQTVYAKYEGAVAAPTAGLHFSRELIKRCEIKGIRFAEVTLHTGLGT
                     FRPIEVEDLSKHKMDAEYYRIDETACRIVNKAKTDGHRICSIGTTTMRALESSFTAEK
                     LLKPSEGWTNMFIHPPYEFNIADALVTNFHLPKTSLLIMASAFAGYDLVMEAYKKAIK
                     DKYRFFTYGDAMLLL"
BASE COUNT          469 a          460 c          511 g          494 t
ORIGIN      
        1 agggagaaag ctacctcgcc aagcggagga aactgaaaat gggggcagat cgttcggcca
       61 gcatccagtt tgtacctgta aaggcagcgg ccggttacct ggccggttac aacgatcctg
      121 aattcattga tgaactgaac actttcaccc tccctatgct gggccccggc gaatacaggg
      181 ctttcgagat catcggcgat tcgatgttac ctacacccag tggaagtgtg attgttggtg
      241 agaaagtaga agacatggag tccgttaaat cgaatgatgc ctatatcgtg gtcagccgca
      301 acgacggcat tgtttacaag cgcatacaaa aagcgccaaa gaccaaggcc acgcttaccc
      361 tagtaagcga caatcccaat tatccgcctt atacggtgaa tgccgatgag gtggctgaga
      421 tctggaaagc ccagatggta ctcagcaggc cgcaggaaaa gccggtgtgg gatgtcaatc
      481 aactggccag cgtcgtgaat accttgcagc agcaagtaag ttccatgcag aagaaagcaa
      541 actagttcta atagagacct tcacaaatga aaaaaagcag ctggtgtcta ccatgctgct
      601 tttctttttt atgctttggc gcttttacaa caacaacatc gcgtcgccgt aggtgaagaa
      661 gcgatactta tccttgatgg ctttcttgta agcttccatt accaggtcgt agccggcaaa
      721 ggccgaagcc ataatgagga gactggtttt tggcaggtgg aagttggtca ccagcgcatc
      781 cgcaatattg aattcataag gcgggtgaat gaacatgttg gtccagcctt cggatggttt
      841 caacaatttc tctgcagtga aagaagactc cagcgccctc atggtagtgg tgccaatgga
      901 gcatatgcgg tgaccatcag tcttcgcttt gttcacaatg cggcaggcgg tttcatctat
      961 cctgtaatat tcggcatcca ttttatgctt gctcaggtct tccacttcaa tggggcggaa
     1021 ggtacccagg ccagtatgca gggtaacctc agcaaaacga attcctttga tctcgcagcg
     1081 cttgatcagt tcgcggctga aatgcaggcc ggcagtaggc gctgccaccg cgccttcgta
     1141 cttggcatat accgtctggt agcgttcttt atcggtttca tccggcttgc gcttgatgta
     1201 tttgggcagc ggggtttcgc cgaggaaatc caacatctgg cggaacgact cttcagattc
     1261 ttcccacaaa aatttgatgg tacggccacg gctggtggtg ttgtcaatta cttctgccac
     1321 cagttcatcg ttgtcgccga aatagagttt gtttccaaca cggatcttac gggcaggatc
     1381 tacaatcaca tcccacaggc ggttggggcg gttcagttca cgcaacagga acacttcaat
     1441 cttggcgccg gttttttcct tgcggccgta catgcgggca ggaaatacct tggtgttgtt
     1501 taccacgaaa acatccttgt cgttgaagaa gtccatgatt tcatagaaat gacggtcttc
     1561 catgttgcct gttttgcggt ttactaccaa caggcggctg tcttcgcgac gcttgagcgg
     1621 gttttgcgca atgagattga gggggaggtc gaacttgaac tgggagagtt tcatatcagt
     1681 acagcgtttt ttgaatagaa attactcgat aactactgta cctcgggcct tttgcctatc
     1741 ccgttcggga tgacaaagca ggttaagaat cacctgctgg ccttacggcg ccagtaggtt
     1801 atcgatgcca gctatttgcc ggcgaagcgc aaaggtaatg gtattgtggc ctgtttgacg
     1861 tcactggccc caaactgccg ggttaaaatt tcaggtggcg cacggtaagg ccatcattga
     1921 tcagctgttg gagc
//
LOCUS       DATIQF010000718         2011 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_239592,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000718 DATIQF010000000
VERSION     DATIQF010000718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239592"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..202
                     /locus_tag="VLL95_12255"
     CDS             <1..202
                     /locus_tag="VLL95_12255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39680.1"
                     /translation="FNPHSVKALFHHYAYSSEKAQRLLGLQFTPLDESLRNTIAFMKR
                     NEAAADQIITRHAKRFAYENAG"
     gene            186..1040
                     /locus_tag="VLL95_12260"
     CDS             186..1040
                     /locus_tag="VLL95_12260"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR39681.1"
                     /translation="MKMQDENITVITGASGGIGKEFVKYCAGLGHRLILLDKNEDELL
                     RLAIWLKKNFQVQVHPFAIDIASPVELAAVTDFLREQHFKIDWLINNAGNGHVALFKE
                     SKLDAIQRELNVNVLGTTLLTHELLPFMNNERKSYLLFMSSLACFYPLPLKNTYGAAK
                     AFVTNFAGALRFELAAENISVSVCCPGPVNSNIPQHLADKLLSWKEQLLVEEPEVIVQ
                     AAIGGMLKEKKIIIPGFFNKVLFHVTNLMPQWLRAQWTKRQYSSKRKLLKEQPLIPGE
                     PNAEWPLR"
     gene            1025..1693
                     /locus_tag="VLL95_12265"
     CDS             1025..1693
                     /locus_tag="VLL95_12265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HSR39682.1"
                     /translation="MALTLKTIWSVARSRVVINRTKLILFTVTPALLPLGAMVFMQWI
                     PVPLAKYFFFTKGWVAWTLTEYCLNRWGYHKMHKRSCAHQHRQATNDSINFAVRGLSI
                     FPMGAGLWTLWAAPVWFTYFSGWMCGLSLCWAMHHLVHHPAGLRFFPGLIRLHIWHHC
                     NNPDMCFGISTTLWDRIFKTAPAKGTTTATAWIHQYYAEQNLSEKEHHSIYRKLNPKQ
                     SLVL"
     gene            complement(1708..>2011)
                     /locus_tag="VLL95_12270"
     CDS             complement(1708..>2011)
                     /locus_tag="VLL95_12270"
                     /inference="COORDINATES: protein motif:HMM:NF024918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family protein"
                     /protein_id="HSR39683.1"
                     /translation="TCHGIITGGGFETPAEALYLQKRLMSIPIRGQYEQRCNAAALQQ
                     MGITVLQDADTDYFSNDIEQWLNASQPAIQQKAADIESILFKVVNMTRKNAMLSVA"
BASE COUNT          515 a          482 c          479 g          535 t
ORIGIN      
        1 cttcaacccc cattcagtta aggcgctgtt tcaccactac gcctattcat ctgaaaaggc
       61 ccaacgcttg ctgggcttgc agttcacgcc actggatgaa agcttgcgca acaccattgc
      121 cttcatgaaa cgcaatgaag ctgccgcaga tcagattatt acccgacacg caaaacgttt
      181 tgcctatgaa aatgcaggat gagaatatta cagtgatcac aggtgcttcc ggcggcattg
      241 gcaaagaatt tgtgaagtat tgcgctgggt tgggtcaccg gctcattttg ctcgataaaa
      301 atgaagatga attgctgcgc cttgccattt ggctgaaaaa gaatttccag gtgcaggtgc
      361 atccattcgc aatcgatatt gcctcacctg ttgaactggc tgctgtaaca gactttttga
      421 gggagcaaca tttcaaaatt gattggttga tcaacaacgc cgggaatggt catgtagcgc
      481 ttttcaaaga gtcgaaactt gacgccatcc aaagagagtt gaacgtgaat gtgctgggta
      541 ccaccctgct cacccatgaa ttgctaccct ttatgaacaa cgaaagaaaa agttacctgt
      601 tgttcatgag cagcctggca tgtttttatc cgttgccttt aaaaaatacc tacggtgccg
      661 ccaaagcttt tgttaccaac tttgccggcg ctttgcgctt tgaactggct gctgaaaata
      721 tttctgtttc ggtgtgctgc ccgggcccgg taaattccaa cattccccag catttggccg
      781 acaagctgct ttcatggaag gaacagttgt tggttgaaga gccggaagta atagtgcaag
      841 cggccatagg cggcatgttg aaagaaaaga aaatcatcat acccgggttc ttcaataaag
      901 tattgtttca tgttaccaac ctgatgccgc aatggctgag ggcccaatgg acaaaaagac
      961 aatacagcag caaacgaaag ctgttgaaag aacaacccct gatacccgga gagcccaatg
     1021 cggaatggcc cttacgctga aaacgatatg gtccgttgcc aggagccggg tagtgatcaa
     1081 cagaaccaaa ttgatcctgt ttaccgttac accggctttg ttgccgcttg gtgccatggt
     1141 ctttatgcaa tggatccctg ttcctttggc caagtacttt tttttcacca aaggttgggt
     1201 ggcatggacg cttacggagt attgcctgaa ccggtggggc tatcacaaga tgcacaaacg
     1261 atcatgtgct catcaacacc gccaggcaac aaatgacagc atcaactttg cagtgagagg
     1321 tctttccatc tttcctatgg gtgccggtct ttggacactc tgggcagcgc ctgtttggtt
     1381 cacctatttt tcagggtgga tgtgcggtct ttcgttgtgc tgggccatgc atcatttggt
     1441 gcatcatccg gcaggattgc gtttctttcc cggtctgatc aggttgcata tctggcatca
     1501 ttgcaataac ccggacatgt gttttggaat cagcaccact ttgtgggaca ggatcttcaa
     1561 aacggcgccg gccaaaggaa cgaccactgc aacagcctgg attcaccagt attacgccga
     1621 acaaaacctt tccgaaaaag aacaccattc catttacagg aaactgaatc cgaaacagtc
     1681 attggtattg taaaatgatt cttctcttca ggcaacagaa agcatggcat ttttcctggt
     1741 catatttaca accttgaaca aaatggattc aatgtccgct gccttttgct gtatggctgg
     1801 ctgtgatgca ttcagccatt gttcaatgtc attcgaaaaa taatcagtgt cggcatcttg
     1861 cagcactgtt atacccattt gttgcaaagc ggcggcgttg cagcgctgct cgtactggcc
     1921 acggatggga atactcatca atcgcttttg caggtacagt gcttcagccg gtgtttcgaa
     1981 cccgcccccg gttatgatgc catggcaggt a
//
LOCUS       DATIQF010000719         4037 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_148410,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000719 DATIQF010000000
VERSION     DATIQF010000719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4037
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148410"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..450)
                     /locus_tag="VLL95_12275"
     CDS             complement(<1..450)
                     /locus_tag="VLL95_12275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39684.1"
                     /translation="MMDVNKILNADFLDILFDGRNKEYGAYELRRSYNKRLTIAIAAM
                     IAIALMIFLGSVISKEAAKNKKAQVEVQDVKLEEVKEQKNEPPPPPPPPKLPEPPKVE
                     IAKFTPPKIVKDEEVKEDEKPPEVEKIEEAKIGTINQEGTKDEGIVAP"
     gene            complement(516..1058)
                     /locus_tag="VLL95_12280"
     CDS             complement(516..1058)
                     /locus_tag="VLL95_12280"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HSR39685.1"
                     /translation="MADIGEGGGGGGHKKGPGVKKGKKLSTRVDLTPMVDLGFLLITF
                     FIFTTTMSTPTAMKLYLPKDTEKPEEQNKAKESGALTLMLAKDRNVFYYEGILKDDGS
                     NFKSTNFKELRNVILDKKQRTDAKDLVIVIKPNKDCKFRDVVDALDEMTINDVKRFAL
                     VDISEAEQKLVEISQGTGGQ"
     gene            complement(1092..1706)
                     /locus_tag="VLL95_12285"
     CDS             complement(1092..1706)
                     /locus_tag="VLL95_12285"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HSR39686.1"
                     /translation="MTAFCDVAFLLLSFFILTTKFKPPEAIAVTTPNSVSSKTAEDKD
                     QVLFTISPEGKVFLSLSEENRRQEIVSDLNSRLNLQLTPDDIKKAARAEFFATPLSQL
                     KAYLNLPSDQRKGETLAGIPCVDSTNNEVTEWVNSAVTVFFGGKMNLMVKGDQNVPYP
                     VFKLVIDAFKKNDQMKFQVITNQAGIPEGTPLFEKQRAGEKLSD"
     gene            complement(1843..2703)
                     /locus_tag="VLL95_12290"
     CDS             complement(1843..2703)
                     /locus_tag="VLL95_12290"
                     /inference="COORDINATES: protein motif:HMM:NF013760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015252 - proton channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HSR39687.1"
                     /translation="MAENKPTATVAKAATSVQPKKSSNAISYIAPIACIVAGYVIWRF
                     VLGDPSNFTSPDPKGGFWPSHVGPKGALVRAYEGGIIVPLLIGLNLMVWTFAIERFLT
                     ISKATGKGNVNEFIRKVQYHLANKNIDAAIGECDKQKGSVGNVMKAGLRKYKEMTTVT
                     ELDTEQKVLAIQKEVEEATALELPMLEKNLVFLSTIVSLATLVALLGTVMGMIKSFAA
                     LGEEGGAAAATALAIGISEALYNTALGIGTSAIALVFYNIFTTRIDGITYGIDESGFT
                     LTQSFASLYK"
     gene            3027..>4037
                     /locus_tag="VLL95_12295"
     CDS             3027..>4037
                     /locus_tag="VLL95_12295"
                     /inference="COORDINATES: protein motif:HMM:NF028457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5117 domain-containing protein"
                     /protein_id="HSR39688.1"
                     /translation="MKKTNFKLLGVAVILAGMLQVNAQDRRPTTPPPQTPPTGSTQPA
                     GNGGQRPGAPAAQKGPKPYKEVITEKAKSQKGLFQVHQVEDKYYLEIPDNILGRDILV
                     VNRISRAAAANGNRQGAGYAGDIISESVIQFAKGPDDRLFINKMSYRERATDSVGGMY
                     KSVMNSNIQPIVYSFDIKALSKDSTGSVVEITPLITSDNDLLFFDASDKRAYNLGAIQ
                     NDKSYIVSVNTYPTNLNIKTVKTYGRTPSAPTQSIGGIRFGGAASTDPATYELNSSLV
                     LLPKEPMRSRIFDERVGYFASGYVDFDANPQGIKNVTVVRRWRLEPKPEDVEKYKRGE
                     LVE"
BASE COUNT         1054 a          965 c          921 g         1097 t
ORIGIN      
        1 aggggcaacg atgccttcgt cctttgtacc ttcctggttg atggtaccaa ttttggcttc
       61 ctcaattttc tctacttccg gtggtttttc gtcctctttc acttcctcat cctttacaat
      121 tttgggaggg gtgaatttgg caatctccac tttgggaggt tctggaagct tgggtggtgg
      181 aggtggtggg ggcggctcgt tcttctgctc tttcacctct tccagcttca catcctgcac
      241 ctcaacctgg gcctttttgt ttttggcggc ttccttggaa atcaccgaac ccaaaaagat
      301 catcagggct atggctatca tggctgcgat ggcaatggtc aaacgtttgt tgtaagacct
      361 gcgcagctcg taggcgccat attccttatt cctgccatca aaaagaatgt cgaggaaatc
      421 ggcgtttaaa attttgttta cgtccatcat agctgaaagt atttgctatt tagattctgt
      481 ttctgttcaa attgcacaag gagtgatcaa aaatattatt gacctcctgt accctgacta
      541 atctcaacca gcttctgctc agcttcagag atatctacca acgcaaaacg cttaacatca
      601 ttgatggtca tttcgtccaa cgcatcaacc acatcacgga atttgcagtc tttgttgggc
      661 ttgataacaa tcaccaggtc tttagcatcg gtgcgctgct ttttgtcaag gatcacgtta
      721 cgcaattctt tgaagttggt gctcttgaag tttgaaccat catccttcaa aatgccttcg
      781 taatagaata cattacgatc ttttgccaac atgagagtaa gcgcaccaga ttccttggct
      841 ttgttctgct cttccggctt ctcagtgtcc tttggcaggt acaacttcat tgccgttggc
      901 gtactcatgg tggtagtaaa gatgaaaaaa gtgatcagca ggaacccgag atccaccatt
      961 ggggtcaggt ccaccctggt cgacaacttt ttgcctttct ttacgccggg ccctttctta
     1021 tggccaccgc caccgccgcc ttctcctata tctgccatag cgattctttt ttaatgtgaa
     1081 ttatttgttt cctaatccga aagtttctca ccagcacgct gcttttcaaa aagcggtgtt
     1141 ccttcaggaa ttcccgcctg gttggtgatc acctggaact tcatctggtc gtttttcttg
     1201 aaggcatcaa tcaccagctt gaaaacagga taaggtacgt tttgatcgcc cttaaccatc
     1261 aggttcattt tgccaccaaa aaacacggtt actgctgaat ttacccattc ggtcacctca
     1321 ttattggtgc tgtcaacaca agggattccg gcgagggtct cacctttgcg ctgatcggaa
     1381 ggaaggttga gataagcctt caactggctc agcggcgtgg caaagaattc tgccctggca
     1441 gccttcttta tatcatccgg agtcaactgg aggttcaaac gggaattgag gtcactcacg
     1501 atctcctggc ggcgattttc ttctgaaagc gagaggaata ccttgccttc gggagaaata
     1561 gtgaacaaca cctggtcttt atcctctgca gtcttcgacg aaacggagtt cggcgtggta
     1621 acggctatag cctctggcgg cttaaacttc gtcgtcagga tgaagaatga gagcagcagg
     1681 aaggccacgt cgcagaacgc ggtcatatca acccaggtac ttttacgagg tattttggcc
     1741 ctacccatat tactagattc ttttggttaa ttgattgtga ttccactgaa ctcctgattc
     1801 cataaatggg accaggattt tttttgaaat acgcttgtgc tcttatttgt acaaagaagc
     1861 aaagctctgg gtcagcgtga atccagactc atcaataccg taagtaatac cgtcgatacg
     1921 ggtagtgaaa atgttgtaga ataccagggc gatggcagaa gtaccgatac ccaaagcagt
     1981 gttatacagg gcttcggaga taccaatagc cagggcagta gcggcagccg caccaccttc
     2041 ttcacccagg gcagcaaacg atttgatcat acccattacc gtacccaaca gggcaaccag
     2101 ggtagccagt gatacaatag tagacaggaa caccaggttc ttttcaagca tgggcagttc
     2161 cagggctgta gcttcttcta cttccttctg aatggccagt actttttgct cggtatccag
     2221 ttcggtaaca gtggtcattt ccttgtactt gcgcagacct gctttcatta cattacctac
     2281 gctgcctttt tgcttatcgc attcgccaat agcggcatca atgttcttgt tggccaggtg
     2341 atactgcacc ttgcggataa actcatttac gttgccttta ccggttgctt tgctaatagt
     2401 gaggaaacgc tcaatggcaa aagtccatac catcaggttc aagccaatca gcaggggtac
     2461 gatgatacca ccttcataag cacgtaccag ggcacctttg gggccaacgt ggctgggcca
     2521 gaagccgcct ttaggatcgg gcgaagtgaa attggaaggg tctcccaata caaaacgcca
     2581 aattacatac ccagcaacga tacacgcaat aggcgcgatg tagctgattg cattgctact
     2641 tttcttaggc tgaacagaag tggcagcctt ggccacagtt gcagtcggtt tgttttctgc
     2701 catgattgtt ggtttttagt ttaaaatctt agttgtgaaa tttttagcaa ttgggaagca
     2761 agtgtacaca aaaattgaat tcggcaatta atgagcaggt ttttttttgg tcttgtgccc
     2821 aaaattgacc cgccgcaaac gatagcagta attcaatagt ttgtttggac gtcaaaatca
     2881 gcaatacggt gtgtaattcc cttcatacaa caaagactat tttccaattg gtccaagaag
     2941 actggccgtt tgtataaaag attatcgtct aaacttaata acggtaagtt tgtttcccaa
     3001 ccttttattt taaatcctat cgtaagatga agaaaaccaa tttcaaactg ctgggagtag
     3061 cggtgatttt ggccggtatg ctgcaggtaa atgcacaaga cagaaggcca acaactcccc
     3121 cacctcaaac cccaccaacc ggttcaaccc aacccgccgg aaatggcggg caaaggccgg
     3181 gagccccagc agcgcaaaaa ggccccaagc cttacaaaga agtaattacg gaaaaagcca
     3241 aatcacaaaa aggactgttc caggtacacc aggtagaaga caaatactac ctcgagattc
     3301 ctgacaacat acttggccgg gatattttgg tggtaaacag gatttcaaga gcggcggcgg
     3361 ccaatggcaa ccggcagggc gccggttatg ctggcgacat catcagcgaa agcgtcatcc
     3421 agtttgcaaa agggccagat gatcgcctct tcatcaataa aatgagctac agggaaaggg
     3481 caaccgacag tgtggggggc atgtacaagt ctgtcatgaa ttcaaacatc cagcccattg
     3541 tttattcatt cgacatcaaa gcgctttcca aagacagcac ggggtcagta gtggaaatca
     3601 cccccctgat cacctcggac aatgatctgc tgttttttga cgcttctgac aaacgcgcct
     3661 acaacctggg cgctattcaa aatgataagt cttacatagt aagtgtgaat acttatccca
     3721 cgaacctgaa cattaagacg gtaaaaactt atggcagaac accttcagcc cccacccaat
     3781 caatcggagg cattaggttt gggggtgctg caagcactga tccagctact tatgagttga
     3841 acagttcatt ggtgttgctt cccaaagaac ccatgcggtc ccgcattttc gatgaaaggg
     3901 taggctactt tgccagcggc tatgtcgatt ttgatgccaa tccccagggc attaaaaacg
     3961 taacagtggt aaggcgctgg agactggagc ccaaacccga agatgtagaa aaatacaagc
     4021 gtggtgaatt ggtggag
//
LOCUS       DATIQF010000720         4103 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_284811,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000720 DATIQF010000000
VERSION     DATIQF010000720.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4103
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284811"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..437)
                     /locus_tag="VLL95_12300"
     CDS             complement(54..437)
                     /locus_tag="VLL95_12300"
                     /inference="COORDINATES: protein motif:HMM:NF025392.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4242 domain-containing protein"
                     /protein_id="HSR39689.1"
                     /translation="MRNKIQTQLLGIAALLLFCVAANAQASGAKTKTEPAMKTYLIEK
                     DIQGASALSPADLKGISQKSCTVLKEMGPRIQWQQSYIVGNKIFCVYKAENPELLREH
                     AKKGGFPITNITEISSVISPATAEQ"
     gene            complement(541..1176)
                     /locus_tag="VLL95_12305"
     CDS             complement(541..1176)
                     /locus_tag="VLL95_12305"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSR39690.1"
                     /translation="MLEGDYFIASFVNVADALAAAQSIAGQLAGIGGLHQFSVSLHAG
                     EAVEKAEKLFGETISLSKALCALHTPEKIRLSAAIKGMLTDDQLLHWCKQANILPLQD
                     EEMLAALFDRLESNYDNADFGVDQLTKEMAMSNSAMYRRCVAVTGYSPNDLLRDFRLA
                     KAAQFIRMQKDSLTSVAYKTGFASPSYFGKCFKKRYGLMPIRFAEWAKRSV"
     gene            complement(1240..1647)
                     /locus_tag="VLL95_12310"
     CDS             complement(1240..1647)
                     /locus_tag="VLL95_12310"
                     /inference="COORDINATES: protein motif:HMM:NF025392.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4242 domain-containing protein"
                     /protein_id="HSR39691.1"
                     /translation="MPIFMDLHIVPGVSAKDVAEAHRMDVYIEKDHHCTCLTYWVDEP
                     RGHVFCLIDAPSKESVVELHNRSHGLTPHKIIEVSPGLVQSFLGRIKDPELAQLTESG
                     LPIIDDGSFRILLTTLVEENYAMYEGMNSDQVR"
     gene            1772..2485
                     /locus_tag="VLL95_12315"
     CDS             1772..2485
                     /locus_tag="VLL95_12315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39692.1"
                     /translation="MQKNATHRPFYTHAWVFFLLAMAVIVAGFFPSFFTKLDTTDAWH
                     HLHGISATAWLVLLVTQPLLYSRNKMELHRKLGKTAYLFVPLLVIGGIKMIATMVQRR
                     DQYPPMEAFRLSFLDTVSLLFFVYFFAMAIKNVRITGLHARYMAATAILLVPPGLARL
                     LFNLFPNVITGFEINLHVCFLVLEAATLLLLVDDWRRDGKLSKPYITLAAVLVLLHAT
                     MPFSLHWAWWQHLVVNMFG"
     gene            complement(2529..2930)
                     /locus_tag="VLL95_12320"
     CDS             complement(2529..2930)
                     /locus_tag="VLL95_12320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39693.1"
                     /translation="MAQGQQKENAGKGKPEQAEKGSKENKGQKEAKDDKTQPDNKGQQ
                     MKELNEIYNQRKRAIMNDENLSKTEKQEKLKALNKQHNEDISRINGGKKEGDDREEKA
                     EKSKEKGEKGEKGDKGEKGEKDGKEKKKQKN"
     gene            3153..3887
                     /locus_tag="VLL95_12325"
     CDS             3153..3887
                     /locus_tag="VLL95_12325"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HSR39694.1"
                     /translation="MPALIPNISVDCVIFGFHEDTLSVLLTKRVLKDPKSRKIIFSDY
                     TLQGHHVLEGENLEQAAVRVLEEKTGLGNIYLEQFHTFGDTDRLANEKDWLWTRMQYP
                     EVHRHVFSVAYYSLVDSSRIKPDQKHPDAAWFPVKSLPPLGFDHNRMIVMALEFLQHK
                     LRREPVGFELLPEKFTVTQLQKLYETILDTKFDKRNFRKKMAQMPYVVPIREKLTGKA
                     HKPAQMYIFSKEVYEKTKTDNNSFIV"
BASE COUNT          976 a         1035 c          910 g         1182 t
ORIGIN      
        1 ttgccgatcc tggtgaatcg ggcaaggcag tgctccttgt tgaggttgag cggttattgc
       61 tcggctgttg ccgggctgat aaccgatgaa atttcggtga tgttggtaat gggaaatccg
      121 ccttttttgg catgttcacg gagcaactca gggttttcag ccttgtatac acaaaagatc
      181 ttgttgccca cgatgtagct ctgctgccat tgaatgcgag gccccatttc cttgagcacg
      241 gtgcaggact tctgcgaaat tcccttgagg tcggctggag acaaagcact ggcaccctga
      301 atatccttct caattaggta ggttttcata gcgggctcag ttttcgtttt ggcgccggag
      361 gcctgcgcat tggcggctac acagaaaagc agcagggctg caatgccaag aagttgagtc
      421 tggattttgt ttcgcatggc taaatgattt tttgggtgat tgataacgct aaactagtag
      481 ccacaccgcc catgctgtta gcacaaaaca ttcaaccttt ggtaatattc attcagtttt
      541 ttaaaccgag cgttttgccc attccgcaaa ccggattggc atgaggccat accttttctt
      601 gaagcatttt ccaaagtagg atggactggc aaagcccgtt ttgtaagcaa ccgaagtcag
      661 cgaatctttc tgcatcctga taaattgggc cgctttggcg aggcgaaagt cgcgaagcag
      721 gtcattgggc gaatacccgg tgacagcaac acatcgcctg tacatggccg aattgctcat
      781 ggccatttct ttggttaatt gatcgacgcc aaaatcggcg ttgtcgtaat tgctttccag
      841 cctatcgaac aaagcggcca gcatctcttc gtcctgcaaa ggcaggatgt tggcctgttt
      901 gcaccagtgc aataactggt catcggtgag catcccttta atggcagcgg aaaggcgtat
      961 tttttcaggc gtatgcaaag cacaaagggc cttagataag gaaatggttt ccccaaaaag
     1021 tttctcagct ttttcaacag cctccccggc atgaaggctc acactgaatt gatgcaaccc
     1081 gccgatgcct gccagctgcc ctgcaatgga ctgtgcggca gccaatgcat cagccacatt
     1141 tacaaaagag gcaataaagt aatcgccctc cagcattgcc tcgctaccaa gatgtgcagc
     1201 aattatcttt tgcagaaggt catacctttt ttggcgtacc taccgaacct ggtcactgtt
     1261 cattccttca tacatggcat aattctcttc caccagtgtg gtgagcagaa tcctgaagga
     1321 gccatcatca atgatcggga gcccgctttc agtcagttgt gccagttccg gatcttttat
     1381 gcgtccgagg aatgactgca ccaggcccgg gcttacttcg atgatcttgt ggggagtaag
     1441 cccatgcgac ctgttgtgca gttccaccac actctcctta gagggggcat caataaggca
     1501 aaacacatgt ccacggggct catccaccca gtatgtgagg caggtgcaat gatggtcttt
     1561 ttcgatgtat acatccatgc gatgggcctc ggccacgtct ttagcgctta cgccaggcac
     1621 gatatggaga tccatgaaga tgggcatagg tggggttttc caaataccaa gttaggcact
     1681 ctaacagaca atgccatatg aatgaagagc aggcaaacgg ttgttttgcc aagaacttgt
     1741 attatattat ctactcatta tcgaattcgc catgcaaaaa aatgcaaccc accgcccctt
     1801 ctacacccat gcatgggtgt tcttcctgct ggccatggcc gtcattgttg caggtttttt
     1861 cccgtccttt ttcacaaaac tcgacaccac tgacgcatgg caccacttgc acggtataag
     1921 cgccacggcc tggcttgtat tgctggtgac ccaacccctt ctgtacagca gaaataaaat
     1981 ggaactgcat cgcaagttgg ggaaaacagc ctacctgttt gtaccgctgt tggttatcgg
     2041 aggcattaaa atgattgcca cgatggtgca aaggagagac cagtatccgc ccatggaggc
     2101 atttcggctt tcttttttgg ataccgtttc gcttctgttt tttgtctact tctttgcaat
     2161 ggccataaag aatgttcgaa tcaccggctt gcatgcccgg tatatggcgg ctactgcgat
     2221 cctgctggta ccgccaggtc ttgcccgatt gcttttcaac ctgttcccca atgtgatcac
     2281 cgggttcgag atcaacctgc atgtttgctt cctggtgctg gaagcagcaa cgctcctgct
     2341 ccttgttgat gactggaggc gggacggcaa actcagcaag ccttacatca ccctggccgc
     2401 agtgcttgtt ttactccatg ccactatgcc tttcagtttg cattgggcct ggtggcagca
     2461 cctggtggta aatatgtttg gctgataaca aaatcgcccc ggtggtcacc ggggcgattt
     2521 tttcagcatc aatttttttg tttcttcttt tccttgccat ctttttcccc cttttcccct
     2581 ttgtcaccct tctctccttt ttcgcccttc tccttactct tttcagcttt ttcttcccgg
     2641 tcatctcctt ccttttttcc tccattgatc cggctgatat cttcgttgtg ctgtttgttc
     2701 agcgctttca gtttctcctg cttttccgtt ttgctcaggt tctcatcgtt cattatggcc
     2761 cgcttgcgct ggttgtagat ttcattcaac tctttcatct gctggccttt gttgtctggc
     2821 tgcgtcttgt catccttcgc ctctttctgc cctttgtttt ctttgcttcc cttctctgcc
     2881 tgctcaggct ttccttttcc ggcattttcc ttttgctggc cttgcgccat gcatacacta
     2941 catgccaaca acattgcgat acagattctg atagactttt tcattgtggt tcatttaatg
     3001 gtcgtgatca attgacaaat taagataaac aagtctgccg aaatgctgga gggcaactaa
     3061 atcatcaatg aaaaaacaat cttagtcaat cctttgcgat agaataaaaa atactttaga
     3121 ttcgccgtag tgtcttttat acactactaa aaatgccggc attaatacca aatatttcag
     3181 tggattgcgt gatttttgga tttcacgaag acactcttag tgtacttttg acaaaacgag
     3241 tcttaaaaga tccgaaatcc aggaaaatta tcttttcgga ttataccctc caaggccatc
     3301 acgttctgga aggagaaaac cttgagcaag cagctgttcg ggttctggaa gaaaaaacag
     3361 gccttgggaa tatctacctg gaacagtttc acacctttgg cgatacggac cgccttgcca
     3421 atgaaaaaga ctggctctgg acccgcatgc aatatcctga agttcaccgc catgtttttt
     3481 ccgtggctta ctattcgttg gtggacagtt cacgcatcaa acccgatcaa aaacatcctg
     3541 atgccgcctg gtttccggtg aaatcgttac cacccctggg ctttgatcac aatcgcatga
     3601 tcgtgatggc acttgaattc cttcaacaca agctacgccg tgaacctgtg ggatttgaac
     3661 tccttcctga aaaattcaca gttacacaac tacagaaact ttatgaaacc attctggaca
     3721 ccaaattcga taaacgcaat tttcgaaaga aaatggcaca gatgccatat gtagtaccca
     3781 tcagggaaaa gttgaccggc aaggcccata aacctgcgca gatgtacata ttcagcaaag
     3841 aagtgtacga gaaaaccaaa actgacaaca acagctttat agtgtagtct tcactatcac
     3901 aagttccctc tcataaatac caatggaaaa acaaactgct atatgaatgc aaattcaaaa
     3961 ctcccgctat cagaaaagat cggctatgcc ttgggagatg gcgccgccaa tattgcctgg
     4021 cgtggtaccg ccaccttcct gctcgttttt tataccgatg tattcggctt ggcccctgca
     4081 gtagtgggag tcttgctgct tat
//
LOCUS       DATIQF010000721         4331 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_224329,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000721 DATIQF010000000
VERSION     DATIQF010000721.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4331
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224329"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..392)
                     /locus_tag="VLL95_12330"
     CDS             complement(<1..392)
                     /locus_tag="VLL95_12330"
                     /inference="COORDINATES: protein motif:HMM:NF024221.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HSR39695.1"
                     /translation="MAIFKSSNPALSEKSFQGLSIAGTGGEVMTVRGTMNKLGFMLLL
                     LMAGAFYTWGAFAKGQNVSVWMWSGAIGGLVLALVMTFKKEWAPYLAPAYAIAEGLFI
                     GAISAMYNYALAEQMPNIITNAVGLTVGV"
     gene            488..673
                     /locus_tag="VLL95_12335"
     CDS             488..673
                     /locus_tag="VLL95_12335"
                     /inference="COORDINATES: protein motif:HMM:NF014026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HSR39696.1"
                     /translation="MIADFSSQDDIILDLIFGKFKPTGKLPFELPSSMEAVNKQKEDL
                     PYDSKDPLYRFGSGLGY"
     gene            complement(686..3166)
                     /locus_tag="VLL95_12340"
     CDS             complement(686..3166)
                     /locus_tag="VLL95_12340"
                     /inference="COORDINATES: protein motif:HMM:NF039501.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5686 family protein"
                     /protein_id="HSR39697.1"
                     /translation="MATPKRIIFLALLMFLLQWASAQKLLVQGVVRDSHNEEPIPFAS
                     VEIFPARQGVVTDSLGFFSIDVTGMKADSLFITYVGYARKALAIPSLINKENLIIDLE
                     RQVSGGVLVKHKADWGLILWRKVVRHKDHNDRSRFANYAYEVHNKLQLDLNKVNAEKL
                     REMKLLAPFAFVLENIDTSENGNPVLPIFLTETISDYWHSRSPSRSREEIKDSKTNGL
                     NNESVTKQLGAMYQNVNVYSNFIPVFDKQFVSPLSDNGDAYYQYRVADTVVLNGRRYF
                     HWLFTARRKGDNTFEGDAWIHDSTFAVQRIQLRIDGTSPVNYIENLSIYQDFRLINDT
                     TWFLSKDKFIADIYPIGKNKSGMKGRKTTTYRNVIVNSDSVLAALARNKLQEEVIVLP
                     GSEEKSDGYWSSSRHEELNKNEQSIYRMIDTLQQMPIFKKYYNTLSFLTTGYKPIGNF
                     EIGPWFNWLTVNAWEGLRMRFDLGTTPGFHKNMYLHGYLAYGFGDQRFKGKAEMYYFF
                     NKTPRKMLHVSYLNDIDNGQNYYDEVSLDNIFALAVRKSGIPIKFMQIRGQEIEYIHS
                     NLQGWSMKLEAKRRIYNPLQNLPDASNFKSGVGDSLNNFETSISVRFAYLEKFLEGNY
                     FRTSLGSDYPIAELRYSRGWSGVLNSNYDYHKINFRVNGFHKIAPWGTIDYSVYAGKI
                     FGTLPYMLLDVAPGNELYYYNKYAFNLMARFEFINDRYAGVAFEHNIGPGIFKYTGIT
                     RRLKWRQFWNLKTLWGGLTDANRALNFVPGHPFQDLQGRTYAEIGTGVDNILKVLRLD
                     LVWRLAPRPLPESWVSKFGVFGSFRLAF"
     gene            3293..>4331
                     /locus_tag="VLL95_12345"
     CDS             3293..>4331
                     /locus_tag="VLL95_12345"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSR39698.1"
                     /translation="MKSEYIAPALRVISGLTLFCLLTTNTATSQSKKERKAIAKANAL
                     TESNLRKHLSILASDSLEGRRTGTAGEEKAVQYIEQYYKQLGIAPAANGNYRQPFVVD
                     EGKAITSQTNLLLDDKALVVGEHYFPMPWSATGAVDAGSSVALQETGSPWWFDLKEDM
                     EANANNPHFATEQVVREKAIAAAGKGATALLVYNSGKADDGIKFNGKDRSDALAIPVI
                     YLTKKAVAEFAITTDASPHIKAAVSFEAKKRNGINVAAFINNNALQTIVLGAHLDHLG
                     YGEDANSRYTGAAAIHNGADDNASGTASVLELGRILKDRKDIPYNILLLHFSGEELGL
                     YGSKYFTDNPLI"
BASE COUNT         1109 a         1116 c         1039 g         1067 t
ORIGIN      
        1 acacccacgg taagacccac cgcgttggtg atgatattgg gcatctgctc agccagtgca
       61 taattataca tcgcagatat ggcgccaatg aacaggcctt ccgcgatggc ataagcgggt
      121 gccaggtaag gcgcccattc ctttttgaaa gtcatcacca aagccagcac caaaccacca
      181 atggcgccac tccacatcca aacgctcaca ttctgacctt tggcaaaagc accccatgtg
      241 tagaaggcgc cggccatgag caacagcagc atgaacccaa gcttgttcat ggtaccacgc
      301 acagtcatta cttcgccacc ggtaccggct atcgacaagc cctgaaaact cttttcactc
      361 aatgccgggt tgcttgattt gaaaattgcc ataaaacgaa aaattttagc tgctaaacta
      421 agggttttgc tgtgaaagtg atgttagggg cttgcccttc cccggcatca atcaacacag
      481 caaagcattg atcgctgact tttccagcca ggatgatatc attttggatc tcatcttcgg
      541 aaagttcaaa ccaaccggga agttgccgtt cgagttgcca tcctccatgg aagctgtcaa
      601 taagcaaaaa gaagatcttc cttacgattc aaaagacccg ttgtatcgct ttggatctgg
      661 cctgggatac taatgaccga tagcattaaa atgccagcct gaaactgccg aacacaccaa
      721 acttgctcac ccagctttcg ggcaatggac gtggtgccag gcgccacacc aagtcaagtc
      781 gcagtacttt caatatgttg tctacgccgg tacctatctc agcataggtg cggccctgca
      841 agtcctggaa aggatggccc ggcacaaaat tgagtgcacg gttggcatca gtgagtccac
      901 cccaaagcgt cttcaaattc cagaactgtc gccatttcag cctgcgggta atgccggtgt
      961 atttgaatat gccagggcca atattgtgtt caaatgccac gccggcataa cgatcattga
     1021 tgaattcaaa ccttgccatc aggttgaacg catatttatt gtagtaatag agttcattgc
     1081 ccggcgccac atcgagcagc atgtaaggaa gcgtgccaaa tattttgccg gcatacacgg
     1141 agtaatcaat cgttccccac ggcgcaatct tatgaaagcc attcacccgg aaattgatct
     1201 tgtggtaatc gtagttactg ttgagtacgc cactccagcc acgggaatac cgcagctctg
     1261 caatggggta atcgctgccc aggctggtgc ggaaatagtt gccttccagg aacttttcga
     1321 gatacgcgaa tcgcactgag atcgaagttt caaaattgtt gagcgaatcg cccacgcctg
     1381 atttgaaatt gctggcatca ggaaggtttt gcaatgggtt gtagattctt cgtttggctt
     1441 ccaacttcat actccatcct tgcaggttgc tgtgtatgta ttcaatttcc tggcccctga
     1501 tttgcatgaa tttgatgggt atacctgatt tgcgcactgc cagggcaaat atgttgtcga
     1561 gactcacttc gtcataatag ttctgcccgt tgtcgatatc gttcaggtac gaaacatgca
     1621 gcatttttcg aggcgtcttg ttgaagaagt aatacatctc ggccttgccc ttgaaccgct
     1681 ggtcgccaaa tccatatgcg agatagccat gcaggtacat gtttttatga aagcccggcg
     1741 tggttcccag atcaaaccgc atccgcaatc cctcccaggc attcacggtt agccagttga
     1801 accagggacc gatctcaaaa ttgccaatgg gcttgtaccc ggtggtaagg aaggataagg
     1861 tgttgtaata ctttttgaaa atgggcatct gttgcagcgt gtcgatcatc ctgtaaatgg
     1921 actgctcgtt cttgttcaat tcctcatgcc ttgaactgct ccagtagcca tcgctctttt
     1981 cctctgaacc gggcaacacg atcacttctt cctgcaactt gttgcgggca agggctgcca
     2041 gtaccgaatc gctgttgaca atcacattgc gatacgtggt ggttttgcgg cctttcatcc
     2101 cgcttttgtt tttaccaatg ggatagatgt cggcaatgaa cttgtctttc gacaaaaacc
     2161 aggtagtatc attgatcagt ctgaagtcct ggtaaatgga gagattctcg atgtagttaa
     2221 cgggagaggt gccatcgata cgcaactgta tgcgttgcac cgcaaaagtg gaatcgtgga
     2281 tccaggcatc gccttcaaag gtgttgtccc cttttcgtcg ggcggtaaac aaccagtgaa
     2341 agtagcggcg gccattcaac actaccgtat cagccacccg gtattggtaa taggcatccc
     2401 cattatcgct cagcgggctc acaaattgct tgtcgaatac cgggatgaag ttgctgtaga
     2461 catttacatt ctggtacatg gcgcccagtt gcttcgtcac actttcattg ttcaggccat
     2521 tggttttgct gtccttgatc tcctcacggc tgcggctggg gctgcggctg tgccagtaat
     2581 cgctgatggt ttcggtgaga aaaatgggca gcacagggtt gccattttca gaggtatcaa
     2641 tgttctccag tacaaaggca aaaggcgcca gcaatttcat ttcccgcagt ttctccgcat
     2701 tcaccttgtt caaatcaagc tgcagcttgt tgtgtacttc gtaagcataa ttggcgaaac
     2761 gcgaccggtc gttatgatct ttgtgtcgca ccactttacg ccagagaata agaccccagt
     2821 cggccttatg tttcaccagc accccacccg aaacttgccg ctccaggtct atgatcaggt
     2881 tttccttgtt gatcaacgat ggaatggcca aagcctttcg ggcataacct acataggtaa
     2941 tgaaaagcga atcggctttc atgccggtaa catcaatgct gaaaaatccc agtgaatcgg
     3001 taacaacgcc ctgcctggcc ggaaaaattt caaccgaagc aaaggggatg ggctcctcat
     3061 tgtgactgtc tctcaccacg ccttgcacca gcaatttctg cgccgatgcc cattggagca
     3121 ggaacatgag cagggctaga aatattatcc gcttcggtgt ggccatggct gcaaatgtag
     3181 gccaatgcct accaccggct tttttctgcc gaaggctggc attggttttg tcaatttatt
     3241 aaaaacaaag cagggaaggt gcggctggca tccagcactt aattttgcct ccatgaaatc
     3301 ggaatacatc gccccggctt tgcgggtaat atcaggactc acgctgtttt gcctgcttac
     3361 caccaatact gcaacttccc aaagcaaaaa agaacgcaag gccattgcca aagccaatgc
     3421 ccttaccgaa agcaatctgc gcaagcatct ttccatcctc gcttccgaca gcctggaggg
     3481 acgtcgcacc ggcactgctg gcgaggaaaa agctgtacag tatatagaac agtattacaa
     3541 gcaactgggc attgccccgg cagccaatgg caactaccgc cagccttttg tagtagatga
     3601 aggcaaggct attaccagtc aaacaaacct attgctggat gacaaagccc tggtggtggg
     3661 cgagcattat ttccccatgc cctggagcgc cacaggtgct gttgatgcag ggtcaagcgt
     3721 tgccctccag gaaacaggaa gtccctggtg gtttgatctg aaagaagaca tggaagccaa
     3781 tgccaacaac ccgcattttg caacagaaca ggtggtgcgg gaaaaggcca ttgccgccgc
     3841 tggcaaaggc gctaccgcat tgctggtata caacagtggc aaagccgatg atggcatcaa
     3901 attcaacggc aaagatcgtt cggatgcgtt ggccattccc gtgatctacc tgaccaaaaa
     3961 agcggtggct gaattcgcca ttaccaccga tgccagtcca cacatcaaag ctgctgtaag
     4021 ttttgaggca aaaaaacgca atggcatcaa tgtggcagcg ttcatcaata acaacgccct
     4081 ccaaaccatt gtactgggtg cacacctcga tcatcttggt tatggtgaag atgccaacag
     4141 ccggtatact ggggcagcag ccattcacaa cggcgccgat gacaatgcca gcggtacagc
     4201 ctcagtgctg gaactgggcc gcatcctgaa agacaggaaa gacattcctt acaatatttt
     4261 gctgctgcat ttcagcggtg aagagctggg attgtatggc agcaagtatt tcaccgacaa
     4321 cccgctgatc g
//
LOCUS       DATIQF010000722         1662 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_193852,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000722 DATIQF010000000
VERSION     DATIQF010000722.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193852"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..456
                     /locus_tag="VLL95_12350"
     CDS             <1..456
                     /locus_tag="VLL95_12350"
                     /inference="COORDINATES: protein motif:HMM:NF022588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2911 domain-containing protein"
                     /protein_id="HSR39699.1"
                     /translation="NDVVRVKAAVTTTQMKAETFTMQFQNITNNSCELHVRWENVMVA
                     MPIGMDVDGKVMAQIDQTMNKDNRPYFAAAQYYYDNGKDLKQAKAWADKAVEANPSAF
                     WMTLLNARICAKLGDKAGAKAMAEKTIDLATKAKNDEYIKMASELLKTL"
     gene            complement(516..>1662)
                     /locus_tag="VLL95_12355"
     CDS             complement(516..>1662)
                     /locus_tag="VLL95_12355"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR39700.1"
                     /translation="AVLGNKIIYAGEETGFEKSKPAGTTIVAVALANKTVLPGLIEGH
                     SHILLHPYDEVPWKTQVLEESRAERVARAVNHLDATLRAGFTTIRDLGTEGAAFDDVG
                     IKSAIEKGIIQGPRMLVATEAIVATGSYAPKSGSADIDFPKGAAEADGVEGLTKEIRR
                     QMGKGADVIKLYGDYRWGLHGEAQPSFTQAELNAAVEVAASAGRKVVVHAVTTEAMKR
                     AAMAGVSTIEHGDMGDEATFTLMKEKGVAFCPTLAATESVTKYRGWQKGTGSQPEGIT
                     YTKKTFAAALKSGVTIVMGGDVGVFAHGDNAMEMELMVEYGMPALQVLRSATSVNADV
                     FGIADKVGRIRSGLLADLLVVDGNPAENIANIRRVEKIMKDGKWIVR"
BASE COUNT          392 a          472 c          394 g          404 t
ORIGIN      
        1 aacgatgtgg ttagggtaaa agcagcggta acgactacac agatgaaagc cgaaaccttt
       61 accatgcaat tccagaacat aaccaacaac tcctgcgaac tgcacgtacg ttgggaaaat
      121 gtaatggtgg caatgcccat cggcatggat gtggatggca aggtgatggc acaaattgac
      181 cagaccatga acaaggacaa ccgtccttat tttgccgccg cccagtacta ctacgacaat
      241 ggcaaagacc tgaagcaggc caaggcatgg gctgacaagg ctgtagaagc caaccccagt
      301 gctttctgga tgacattgct gaatgcccgc atctgcgcca agctgggcga taaggctggt
      361 gccaaagcca tggctgaaaa gaccattgac ctggcaacca aagccaaaaa tgatgaatac
      421 attaaaatgg ccagcgaact cctgaagacg ctgtaattat tgcctgcaat attgaataag
      481 cacgaagcgc atccatccag atgcgcttcg tttttttagc gaacaatcca tttcccgtcc
      541 ttcattattt tttccacccg cctgatgttg gctatatttt cggcggggtt gccatccact
      601 accaacaggt cggccagcaa accgcttctt atgcgcccca ctttgtcggc aatcccaaac
      661 acatcggcgt ttacagatgt ggcagatcgc aaaacctgca atgccggcat tccgtattcc
      721 accatcagct ccatttccat ggcattgtcg ccatgtgcaa aaacacccac atcgcccccc
      781 atcacgatag tgacaccgga tttgagtgct gcggcaaaag tttttttcgt gtaggtaatg
      841 ccttccggct ggctgcctgt tcccttttgc caaccacgat attttgtaac ggactctgtg
      901 gcagccagtg tggggcaaaa cgcgacgcct ttttctttca tcagcgtaaa tgtggcttca
      961 tcgcccatgt cgccatgttc aatcgtactc acaccggcca tagcagcccg cttcatggct
     1021 tcggtagtaa cagcatgcac caccactttt ctgccggcac tggcagccac ttccacagcc
     1081 gcattcaatt cagcctgtgt aaaactgggc tgtgcttcgc catggaggcc ccaacggtaa
     1141 tcgccgtata gtttgatcac atccgcccct ttccccatct ggcggcggat ctctttggta
     1201 aggccttcca ccccgtcggc ttcggctgcg cctttgggaa aatcgatatc tgctgaaccg
     1261 cttttgggag catagctgcc ggtggccaca atagcctcgg tggcgaccag cattcggggg
     1321 ccttgaatga tacccttctc gatggccgat ttgatgccaa catcatcaaa agccgcccct
     1381 tcggtgccca ggtcgcggat ggtggtaaag cccgctctca aagtggcgtc caggtgattg
     1441 acggccctgg ccacccgttc tgctctcgat tcttccaaaa cctgggtttt ccagggcact
     1501 tcgtcgtatg gatgaagcaa aatgtgtgaa tggccttcaa tgaggccggg taaaactgtt
     1561 ttgttggcca atgccacagc cactatggtt gtccctgccg gtttgctttt ttcaaaacct
     1621 gtttcttcac cagcataaat gattttgttg cccagcacgg cc
//
LOCUS       DATIQF010000723         2202 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_224396,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000723 DATIQF010000000
VERSION     DATIQF010000723.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224396"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2202
                     /locus_tag="VLL95_12360"
     CDS             <1..>2202
                     /locus_tag="VLL95_12360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39701.1"
                     /translation="GLEKTRTIHRIIINAHNPDIVYVSALGTAWGETNERGVYRTKDG
                     GKTWERILFANDRTGAGDFVADPSNPNRMLVGMWEYRRWPWFFKSGGAGSGLYLTLDG
                     GDTWKKLTEKDGLPAGELGKIGFAWSRSNPAVVYALVESSKNALYRSDDGGFSWKMTT
                     NRNIGDRPFYYSDIHVDPSNENRLYNVFSNVTVSEDGGRNFGTLLGWDNIHGDHHAWW
                     IHPSDPNFMIDGNDGGLAITRDKGKTWSFSETLPVGQFYHVNVDDQVPYNVYGGMQDN
                     GSWRGPGYVWRTGGIRNQYWDEIAFGDGFDVVIEPNQRYGYAMWQGGNLLRVDFQSGA
                     SEPCKPYHPDGVFLRFNWNAGIGQDPLDPKTIFYGSQFLHKSSDGGKTWTIISPDLTT
                     NDTAKIKAHLSGGLTYDVTGAENHCTIIAISASQKKQGIIWVGTDDGNLQVTRDGGAT
                     WTNVAKNLPGVPAGSWIPQVHASRYNEGEAFVVVNNYRRNDWTPWIFRTRDFGKTWER
                     LVDEKQVSGYALSFVQDPVEPKLMFAGTEFGLYISVDEGKNWSRWTQGYPTVSTYDMV
                     IHPREHDLVIGTFGRALWILDDIRPLREVAAKGEANTVKNKLKAYPTPEAYLSNVREG
                     AGSHFSGNAMYKGDNRPYGAAVTFSLAELRSKDGKTPESDSVKVEIVNEQGRTVRKLN
                     LMANKGMNRFYWDLTNDGLRMPVQPKPKTEVQAPPGAYVIAGNYKVRIKYGT"
BASE COUNT          598 a          502 c          597 g          505 t
ORIGIN      
        1 gggactggaa aaaaccagga ccatccatcg tatcattatc aatgcacaca accccgatat
       61 cgtatatgta agtgcactgg gcactgcctg gggcgaaacc aatgaacgtg gtgtgtaccg
      121 aaccaaagat ggtggcaaga cctgggagcg catccttttt gcaaacgacc gtaccggagc
      181 aggtgatttt gtggcagacc catcgaaccc caaccgaatg ctggtaggaa tgtgggaata
      241 caggagatgg ccctggttct ttaaaagtgg cggtgcgggg tccggtttat accttaccct
      301 cgatggggga gatacctgga agaaactaac cgaaaaagat ggattgccag ctggtgaact
      361 cggaaaaata ggatttgcct ggtcaagaag caacccggct gttgtgtatg cattggttga
      421 gtcgtcaaaa aatgctttgt accgcagcga tgacggagga ttttcctgga aaatgaccac
      481 caaccgcaac ataggcgacc gcccatttta ttacagcgat attcatgtag atccttcaaa
      541 cgaaaaccgc ttgtataatg tgttcagcaa tgtaacggtg agtgaagacg gtggcaggaa
      601 ttttggcacc ctgctgggct gggataatat tcatggcgat caccatgcat ggtggataca
      661 tccttcagat cccaatttca tgatcgatgg aaacgatggt gggttggcca ttacccgtga
      721 taaaggcaag acctggagct ttagcgaaac acttcccgtt ggacagtttt accatgtgaa
      781 tgttgacgac caggttcctt acaatgttta cggcggcatg caggacaatg gcagctggcg
      841 tggtccgggc tatgtgtggc gcaccggcgg cattcgcaac cagtattggg atgaaattgc
      901 ctttggtgat ggatttgatg tggtgataga acccaaccag cgttatggtt atgctatgtg
      961 gcaggggggc aatttgcttc gtgtcgattt ccagtcgggg gcatcagaac cctgcaagcc
     1021 ttatcatccg gacggggtct ttttacgatt caattggaac gcaggtatcg gccaggatcc
     1081 ccttgatccc aaaaccattt tctacggcag ccagtttttg cacaaaagca gtgatggcgg
     1141 caaaacatgg accatcattt ctccagacct gaccaccaat gatacagcca agatcaaagc
     1201 tcacctgagc ggagggctta cctatgatgt taccggtgct gaaaatcact gcaccatcat
     1261 cgccatcagt gcaagtcaaa aaaagcaagg catcatttgg gtaggtactg atgatggcaa
     1321 cctgcaggtg acacgtgatg gtggtgctac ctggaccaat gttgccaaaa atctgcccgg
     1381 tgtgcccgca ggaagctgga ttccgcaggt gcatgccagc cgttacaacg aaggcgaggc
     1441 gttcgtggtg gtcaacaatt atcgcaggaa cgactggact ccctggatat tccgcacccg
     1501 tgattttgga aaaacctggg agcgcctggt tgatgaaaaa caggtgagtg gctatgcact
     1561 cagttttgtg caggatcctg tggaacccaa actcatgttc gcaggcactg aatttggatt
     1621 gtacatcagt gtggacgaag gcaaaaactg gagccggtgg acccaaggat atcctaccgt
     1681 aagcacttac gatatggtca ttcatccgcg ggaacatgac ctggtaattg gaacttttgg
     1741 tcgtgcatta tggatactgg atgatatcag acccttgcga gaagtggcgg ccaaaggcga
     1801 agcaaacacc gtgaagaata aactgaaagc ttaccccaca ccggaagctt acctgtcgaa
     1861 tgttcgcgaa ggcgccggtt cccatttttc cggcaacgcc atgtacaaag gagacaaccg
     1921 gccttatggt gcggcggtca ctttttcgct ggctgaactc aggtctaagg atggaaaaac
     1981 acccgagagt gattctgtaa aagttgaaat agtgaatgag caaggccgca ctgtcagaaa
     2041 actgaacctg atggccaata agggaatgaa ccgcttttac tgggatctta ccaatgatgg
     2101 tctcaggatg ccggtacagc ctaaacccaa aacagaagta caggcgcctc ccggtgctta
     2161 tgtgatagca ggtaactata aagtgagaat aaagtatggc ac
//
LOCUS       DATIQF010000724         1945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_178678,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000724 DATIQF010000000
VERSION     DATIQF010000724.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1945
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178678"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..426)
                     /locus_tag="VLL95_12365"
     CDS             complement(<1..426)
                     /locus_tag="VLL95_12365"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSR39702.1"
                     /translation="MQLTKKLEAEIQGKYLAYWDAYLKGDMKTFASFLGDDLSVYGTA
                     EGEVFKNKKQVVAFYTSTADQLTGQADFRNRRISLKAIGNTIVVNEQCDLYVLAGKEW
                     MFYGHVRLTAIFEQKGSTWKLVHQHGSFPDSRTEDGEQIA"
     gene            complement(430..567)
                     /locus_tag="VLL95_12370"
     CDS             complement(430..567)
                     /locus_tag="VLL95_12370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39703.1"
                     /translation="MKSINPRESVIQTSYDIVKGHAGELKVQTIAGEGGEFIMSLPVN
                     G"
     gene            complement(578..958)
                     /locus_tag="VLL95_12375"
     CDS             complement(578..958)
                     /locus_tag="VLL95_12375"
                     /inference="COORDINATES: protein motif:HMM:TIGR04256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HSR39704.1"
                     /translation="MAVELKHKDITEKIIGASFEVHKFLGNGFQEVIYQRALAWELSQ
                     AGLSFSREIEQDIFYKQLEEPIGTRRADFVVEGKVLVELKAIIELEDVHLAQVLNYLK
                     AYRLEVGLLINFGSKSLTFKRLVL"
     gene            complement(1001..>1945)
                     /locus_tag="VLL95_12380"
     CDS             complement(1001..>1945)
                     /locus_tag="VLL95_12380"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR39705.1"
                     /translation="EADKALEIASFKLDRTEKVKRTTAILLEETIQELELKRKAVEES
                     KDALQKSLEELKAAQQQLIQSEKMASLGELTAGIAHEIQNPLNFVNNFSDVSNELLEE
                     MLDELRKGKTDDAMAIAEDVKQNLEKILHHGKRADAIVKGMLQHSRSSSGQKELTDIN
                     ALADEYLRLAYHGLRAKDKTFNAAMKTDYDESIGLIRIIPQDIGRVILNLITNAFYAV
                     NERKKIGADGYEPIVSVATRKLPNSIEVRVKDNGTGIPQEIVDKIFQPFFTTKPTGQG
                     TGLGLSLSYDIVKAHGGELKVETRAGEGSEFIIQLPVV"
BASE COUNT          455 a          496 c          360 g          634 t
ORIGIN      
        1 tgcgatttgc tcgccatcct ctgttctgct gtctggaaat gaaccatgct gatgcaccaa
       61 tttccatgta cttccttttt gttcaaaaat ggcagtaagt cggacatgcc cataaaacat
      121 ccattctttg ccggccaata catacaaatc acattgttca ttcacaacta ttgtattgcc
      181 tatagccttc aggctgattc tcctgttgcg gaaatcagcc tggccggtaa gttggtctgc
      241 tgttgatgta tagaatgcaa ctacttgctt tttgtttttg aatacttctc cctccgctgt
      301 tccataaaca gacagatcgt cgcccaggaa tgaagcgaat gttttcatat cgcctttgag
      361 ataggcatcc cagtaagcaa gatattttcc ctggatttcc gcttcgagtt ttttggtcag
      421 ttgcatttcc tatccattta caggtaaact cattatgaac tcgcctccct ctcccgctat
      481 ggtttgcact ttcaactcgc ctgcatgtcc ttttacaata tcatagctcg tctgaatcac
      541 ggattcgcgg ggattgattg atttcacaga agggtgttta cagaacaagt cttttaaagg
      601 ttaagctttt acttccgaag ttgatcagca ggccaacttc gagtcgataa gcttttaaat
      661 aattcaatac ctgagcaagg tggacatcct ccaactcaat aattgctttc aactctacca
      721 gcacttttcc ttctacaaca aagtctgctc ttctggttcc aatcggttcc tctaattgct
      781 tataaaaaat atcctgctca atttcccttg aaaaagataa tccagcttgt gacaattccc
      841 aagccagtgc tctttgatag atcacttcct gaaacccatt tcccaggaat ttatgcacct
      901 caaatgaagc cccaatgatc ttctctgtta tatccttgtg cttcagttca actgccattt
      961 gaataatctc tgcaatcttt taatcaattt aatctgtgat tcagacaaca ggcaattgaa
     1021 ttatgaactc gcttccctcc cctgccctcg tttccacttt caactcacct ccatgcgctt
     1081 tcacaatatc atagctcaac gataagccca ggcctgtacc ctggccagtt ggcttggtgg
     1141 taaaaaatgg ctggaatatc ttatcaacga tctcttgcgg aatgccggta ccattgtctt
     1201 tcacccttac ttcaatgcta ttgggcaatt tcctcgtagc tacggaaaca atgggctcgt
     1261 agccatcagc gccaattttc ttgcgctcat tcacagcata aaaggcattg gtgatgaggt
     1321 tgaggatcac ccgtcctatg tcctgcggta tgatcctgat gaggcctatc gattcatcat
     1381 aatcggtttt catagccgca ttgaaagtct tgtctttagc acgtaagcca tgataggcca
     1441 atcgcaggta ttcatcagcc agcgcattga tatcggtgag ttctttttgc ccgctgctgc
     1501 ttctggagtg ttgcagcatg ccttttacaa tggcatcagc ccgcttgcca tgatgcagta
     1561 tcttttccag gttttgtttt acatcttccg ctatggccat ggcatcatcc gtttttccct
     1621 tgcgtagttc gtccagcatt tcctccagca actcattgct cacatcggaa aaattgttga
     1681 cgaagttgag cgggttctgt atttcatgcg caataccggc agtaagttca cccaggctcg
     1741 ccatcttttc agactggatc aattgctgct gtgccgcttt cagttcttcc aacgatttct
     1801 gcaaagcatc ttttgattcc tccactgctt ttcttttcag ttccagttcc tgaatggttt
     1861 cttcaagcaa tatggcagtg gtgcgcttta ctttttcggt acgatccagt ttgaaactcg
     1921 ctatctccag cgctttatca gcttc
//
LOCUS       DATIQF010000725         8110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_11512, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000725 DATIQF010000000
VERSION     DATIQF010000725.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8110
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11512"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(144..980)
                     /locus_tag="VLL95_12385"
     CDS             complement(144..980)
                     /locus_tag="VLL95_12385"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012705.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004659 - prenyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phytoene/squalene synthase family protein"
                     /protein_id="HSR39706.1"
                     /translation="MISLFHTISELCSKTTTEKYYTSFSSAIRLLHVDLRQPIHNIYG
                     FVRLADEIVDTFHEFNKEDLLREFKKDTYAAIDRGISLNPILHSFQRTVNQYKIDHGL
                     IEAFFNSMEMDLSKRTYDNFGYEEYIYGSAEVVGLMCLFVFCEGNKELYHELKAPARS
                     LGAAFQKVNFLRDVKSDFEGLDRMYFPDCDFRNFTEADKARIEKDIQDDFNAAYQGII
                     RLPLKSRFGVYVAYKYYLSLFNKIKKLEPQRILEERIRIPNYGKAFIVAKAGLRSQLN
                     IL"
     gene            complement(1063..2547)
                     /gene="crtI"
                     /locus_tag="VLL95_12390"
     CDS             complement(1063..2547)
                     /gene="crtI"
                     /locus_tag="VLL95_12390"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR02734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016166 - phytoene dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0016117 - carotenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phytoene desaturase family protein"
                     /protein_id="HSR39707.1"
                     /translation="MEKKAIVIGSGFAGMSAASFLAQSGWDVTVVEKHHTPGGRARQM
                     QVAGFSFDMGPSWYWMPDVFERYFGKFGKQVSDYYHLIRLDPSYRVYWPDDHWDIPAS
                     YAEFRQMLESMEPGAAKALDKVMAEAAYKYEVGINKLVFKPGQSVAEFLDADLLKGIF
                     RLDVFTSIKKHFGKHFKHPKIRELMEFPALFLGALPEDTPALYSLMNYADIKGGTWFP
                     EGGMYKIAEAMHQLAVSLGVNFLFAHEVNGIEVKQGKATGVHAVGPDGKEVFLNAEVV
                     ISGADYHFTETKLLDPAFRSYSANYWNSRVMAPSCLLYYVGLNKKIEGLKHHALFFDT
                     SFQPHARDIYATPRWPDDPLFYVSATSVTDKTQAPAGCENLFFLIPVASGLQGDEEAL
                     RERYFDQIIERFENRLGTPVKDSIVYYKSFGIADFQSEYNAFKGNAYGLANTLLQTAI
                     LKPSARSKKVSNLFYTGQLTVPGPGVPPSLISGEVVASLVNRFF"
     gene            complement(2627..3127)
                     /locus_tag="VLL95_12395"
     CDS             complement(2627..3127)
                     /locus_tag="VLL95_12395"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSR39708.1"
                     /translation="MSALEFDKMLLENADFLRPFAITLTRDHETANDLLQETMYRALA
                     NKEKYNIGTNIKAWLYTIMRNIFINNYRRKAKQNTIFDKTPNEFLLNYNQSVVANPAE
                     GNIKLKEINAALESLPEIFRKPFMLYFDGYKYHEIADMLEEPLGTIKSRIHFARKLLK
                     AHIERN"
     gene            complement(3398..4276)
                     /locus_tag="VLL95_12400"
     CDS             complement(3398..4276)
                     /locus_tag="VLL95_12400"
                     /inference="COORDINATES: protein motif:HMM:NF014646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HSR39709.1"
                     /translation="MDSFTIKDLENLSGIKAHTIRIWEQRYSFLSPQRTETNIRYYNN
                     AELKTILNVALLNKYGFKISHIDKMKPEEMREKILSLSQAQAQQERIINDLIQHMVDM
                     DLERFEDVLDNYIMARGIEKAISQIIFPFLEKIGILWMTNHINPAQEHLVTNIIRQKL
                     VVGIESAGSHLRSNKSLLLFLPEGEHHELGLLFIYYLLKSRGVRTYYLGANVPLRDVE
                     YLVKLKSPDVVYTHLTSVANNFNFEKFLSGFSIKMPKTECIISGRLTQQYKKKIPPTI
                     RFKHSLQEVIEFIATL"
     gene            complement(4426..5619)
                     /locus_tag="VLL95_12405"
     CDS             complement(4426..5619)
                     /locus_tag="VLL95_12405"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR39710.1"
                     /translation="MARIAIILGRLAVGGATAHAIDEALYLKDRHEVMLITGMPAEHE
                     WDASYLLNGEGTISHQMIPGFFRTRKMWMHWKTYVTVRKLLRQFKPDVVHTHTPVAGF
                     IGRIAASRIGVKCIIHTYHGLLFSGYFPPWQSKLLVFFERWLAGKSHLLLALSQGQKN
                     DLVYRYQIAPENKVGCVPVGVDVALFAQSNAELARAAFRYRYHIAPSEFVLGMVGRLV
                     PIKNHRLGLLAFRQLQASFPQVKLLIVGDGPLRQSLLAYCKELGLTYASGAMQSGNPA
                     SVLFVSWQKKMPEVMAALDVVLLTSESEGTPISVMEAMASAKPVVCTKVGGVPEMIDH
                     MVDGLLVEQGDVNGLVAALQHLISDTVLASKLGIQAQAKAAASFNKADGLKLIEERVN
                     DCRLS"
     gene            complement(5641..6702)
                     /locus_tag="VLL95_12410"
     CDS             complement(5641..6702)
                     /locus_tag="VLL95_12410"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase"
                     /protein_id="HSR39711.1"
                     /translation="MKILVTGAAGFIGFHLSKRLVNDGHEVIGLDSINDYYDVNLKFG
                     RLSAAGIEREKIEYGRLVQSIAHSNYAFVQLQLEEREAVMQLFAQHSFDAVVNLAAQA
                     GVRYSVTNPHAYVDANVVGFMNLLEGCRHHHVGHLVYASTSSVYGLNEKSPFSPKEAA
                     DHPISLYAATKKANEMMAHVYSHLYGLPTTGLRFFTVYGPWGRPDMALFLFTKAILEN
                     RPIDVFNYGKMQRDFTYVDDIVEGIVRVIQQPAKSNEHWDPQHPESDSSSAPYRIYNI
                     GNSAPVSLMEYIEAIESKLGRTAEKNLLPLQPGDVTSTYADTTSLEQDFGYKPETTVR
                     EGVSRFIDWYLSFFQPQSS"
     gene            complement(6793..7773)
                     /locus_tag="VLL95_12415"
     CDS             complement(6793..7773)
                     /locus_tag="VLL95_12415"
                     /inference="COORDINATES: protein motif:HMM:NF013255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR39712.1"
                     /translation="MEKGGKILVTGGAGFIGAHLLQAFAQWPLLVADVKSPDTQEPNQ
                     EFIKGDVRNIADMRSAFLRGPVSCIIHLAAAHKDFGIDQEEYFSVNEGGTEVICKLAS
                     EFGVKKIVFFSSVAVYGERNEPTNDQTVPNPTNDYGASKLAAEKLVIDWQRQNSNRTA
                     IILRPALVYGEGNEANMFRLIDQINKGMYFNVGKGDNIKSIAYVKNLVDAAYYLFDRL
                     PVGLHIYNYADEPHLKTSELGLTIAAELGKPKPKSFPLIVLLLLAKPFDIISKFTGRD
                     LPISTARVRKYASRTHHRAQDLFAQGFKPKFTTQEGLSRMVAWYKRKNQA"
     gene            complement(7812..>8110)
                     /locus_tag="VLL95_12420"
     CDS             complement(7812..>8110)
                     /locus_tag="VLL95_12420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39713.1"
                     /translation="IVITTSLAGSPIVGAVHGTHFFVEDYPQGMANRINEIVANRLPF
                     EEVGRNAKSLIRSAYTWLNYEEKLLGCMFGVVGQVAKEESGAESTTNQSVFPKP"
BASE COUNT         2126 a         1973 c         1798 g         2213 t
ORIGIN      
        1 cggtgcaaat ggggctggcg atgagcttcc attttttcca tggtaccaac aggctcatcc
       61 tgctcattta ccaacaccac ctcggttgca gaaatattca tgctgcaaac aaacagaatt
      121 tgattttgaa tgaagggatt cggtcacaaa atattcaact ggctgcgcaa acccgctttg
      181 gccactataa aggctttgcc gtaattgggg atgcggatcc tttcttcgag gatgcgttga
      241 ggctccagct tttttatttt gttgaacagc gagaggtaat atttgtaggc cacataaacg
      301 ccgaaccttg atttgagcgg cagcctgatt atgccctggt aagcggcatt aaaatcgtcc
      361 tgaatgtcct tttctatcct ggccttgtcg gcttcggtaa aatttcggaa atcgcagtcg
      421 gggaagtaca tacggtcaag accttcaaaa tcggatttca catcccgtaa gaaattcacc
      481 ttctgaaagg cagctcccag gctccgggca ggcgctttca gttcatgata gagttctttg
      541 ttgccttcgc aaaacacgaa caggcacata aggcccacta cctctgcact tccatagatg
      601 tattcttcat aaccaaaatt gtcgtaggtc cttttgctga ggtccatttc catgctattg
      661 aaaaaggcct cgatcaaccc gtgatcaatt ttgtattgat tgactgtgcg ctgaaaactg
      721 tgcagaattg gattgagact aatgccacga tcaatagcgg cataagtgtc tttcttgaac
      781 tccctcaaca ggtcttcttt gttgaattca tgaaaggtgt ccacaatttc gtcggccagg
      841 cgaacgaagc cgtaaatatt atgtatgggc tgccttagat cgacatgcaa caagcggatg
      901 gcactactga aagaagtata gtacttctca gtggttgttt tgctgcacaa ttcgcttatg
      961 gtgtgaaaca gggaaatcat tgctgattaa aaatattcta tttgttgata cactcgatcc
     1021 tttgtgcata acacaattca acaaatctgg tttgatgtga ggtcaaaaaa agcggtttac
     1081 gagtgatgcc actacctccc cacttatcaa actggggggc accccgggac ccggcaccgt
     1141 taattggcct gtatagaaaa ggttgctgac ctttttactc cttgcggatg gcttcagaat
     1201 ggccgtttgt aacagggtat tggccaatcc gtaagcattt cccttaaaag cgttgtattc
     1261 cgactgaaaa tcggcaatgc caaatgattt gtaatacaca atactgtctt taacaggggt
     1321 gccaaggcga ttttcaaagc gttctatgat ctggtcgaaa taacgttctc tcaacgcttc
     1381 ctcatccccc tgcaagcccg aagctaccgg gatcaggaaa aagaggtttt cgcagccagc
     1441 cggcgcttgc gttttatcag taacagaggt ggcactcacg taaaagagcg gatcatccgg
     1501 ccagcgggga gtggcataaa tatcccgggc atggggctgg aaggaagtat caaaaaacaa
     1561 tgcgtggtgc ttcagccctt caatcttctt gtttaagcct acgtagtaaa gcaaacaact
     1621 aggggccatt acccggctat tccaatagtt ggcgctgtag cttctgaaag caggatccag
     1681 caatttggtt tctgtgaaat gataatcggc accactaatg accacttctg cattaaggaa
     1741 cacctctttg ccatcaggtc ccacggcatg cacgccagtc gcctttcctt gctttacttc
     1801 aatgccgttt acctcatgtg caaataaaaa attcaccccc agcgaaacgg ccagttggtg
     1861 catggcctct gcaattttat acatgccgcc ttccggaaac caggtgccgc ctttgatgtc
     1921 ggcatagttc atgaggctgt aaagagcagg agtgtcttcg ggcaaggcgc ctaaaaacaa
     1981 agcgggaaac tccataagct ccctgatttt cggatgcttg aagtgcttgc caaaatgctt
     2041 tttgatagag gtgaacacat ccaaacgaaa aatccctttc aggaggtccg catccaggaa
     2101 ttcagctaca ctttggccgg gcttaaacac cagtttgttg atgcccactt catacttgta
     2161 ggcagcctct gccatcacct tgtccagtgc ctttgctgcg ccaggttcca ttgactccag
     2221 catttgacgg aactccgcat agcttgccgg aatgtcccaa tggtcatcgg gccagtacac
     2281 ccggtacgac ggatcgagac gaatgaggtg gtaatagtca gaaacctgtt tgccaaattt
     2341 gccaaagtac ctttcaaata catcgggcat ccagtaccaa ctgggtccca tatcaaaaga
     2401 aaacccagcc acctgcattt gacgggccct gccaccaggt gtatggtgct tttccactac
     2461 tgttacatcc catcccgatt gtgccagaaa gctggcggca gacataccag caaaaccact
     2521 tccaataact atcgccttct tctccaagag atcttcattt taaaataaaa gtcccggaaa
     2581 actttgttta acgggacgct gaatatagtc taaaatagtg cacaaactaa ttgcgctcaa
     2641 tatgcgcttt caggagcttt cgggcaaaat gtatccggct tttgatggtg cccaaaggtt
     2701 cttccagcat gtcggcaatt tcatggtact tgtagccatc gaagtaaagc atgaatggct
     2761 ttctgaatat ttcaggcagg ctttccagcg ctgcattgat ttccttcagt ttgatattgc
     2821 cctcggcggg attggcaact accgactggt tgtaattcaa caaaaactcg ttgggcgttt
     2881 tgtcgaaaat ggtgttctgc ttggctttgc ggcgatagtt attgataaaa atgttgcgca
     2941 tgatggtgta cagccatgcc ttgatgttgg taccaatatt gtacttctcc ttgttggcaa
     3001 gggcccggta catggtttcc tgcagcagat cattcgcggt ttcatgatcc ctggtcaggg
     3061 taatggcgaa cggacgtaag aagtctgcgt tctccagtaa cattttgtca aattccaatg
     3121 cagacataag attgtgttta agattatgag ggtaaagtta aacgcaagtg ttccatattt
     3181 ccaaacattt ttgtttaatt tttttttccg ttgcctaaac aaaatcgtgt tcaatgtacg
     3241 ctttctgaca cgtacacata tgtaaatcaa accgttaggc tcaatctgcc cattccacag
     3301 catcatctct gtaacatgac tttggtcaaa cttcaggcat aacaaaagcc gccccagttt
     3361 tccggggcgg cttttcaatc atggttattg attcagatca gagcgttgca atgaattcaa
     3421 tcacttcctg caggctgtgt ttaaacctta tagtaggagg aatcttcttt ttgtattgct
     3481 gggtaagtct tcccgaaatg atgcactctg ttttcggcat ttttattgaa aacccactga
     3541 ggaatttttc gaaattgaaa ttattagcaa ccgaggttag gtgcgtatac accacatccg
     3601 ggctcttcag ttttacaagg tattccacat ccctgagagg cacattggca ccgaggtaat
     3661 aggtacgaac gccgcgactc ttcagcaggt aatagataaa taataaaccc aactcgtggt
     3721 gctcaccttc gggcagaaag aggagcagcg acttattgga ccgcaggtgt gatcccgcac
     3781 tttcaatacc aactaccaac ttttgccgaa tgatattggt taccaggtgt tcctgggcag
     3841 gattgatgtg gttggtcatc cacagaatgc cgattttctc caggaagggg aagatgattt
     3901 gagagatggc cttttcaatt ccccttgcca ttatgtaatt gtccaacaca tcttcaaacc
     3961 gctccaaatc catgtcaacc atatgctgga tcaggtcgtt gatgatgcgt tcctgctgtg
     4021 cctgcgcctg cgacaacgaa agaatctttt cccgcatttc ttcgggtttc atcttgtcga
     4081 tgtgcgaaat tttgaaccca tacttgttca gcagcgccac attgagaatc gttttcagct
     4141 cagcattgtt gtaatagcga atattggttt ctgtgcgctg agggctcaga aaactgtacc
     4201 gctgctccca aatacgaatg gtgtgcgcct taatgcccga tagattttcc aaatctttta
     4261 tggtaaatga atccatgaca ttataagatt aataagtgtt ctgatttgta gcaaaatagc
     4321 ttagaaaaat gaatcattcg aggtctataa caacgcaaaa gttcattttg ttgcaaatta
     4381 gccaaggctc catttacagg aataaaagct taacaatcaa tgcattcaag aaagccggca
     4441 atcatttacc cgttcttcta tcagtttcag gccgtctgct ttgttgaaag aagcggcggc
     4501 ctttgcctgt gcctggatcc cgagttttga cgccagtacg gtgtcgctta tcaaatgttg
     4561 caaggcagcc acaaggccat tgacatcgcc ctgctccacc agcaaaccat ccaccatgtg
     4621 gtcaatcatt tccggtacac cccccacttt ggtacatacc actggcttag cggacgccat
     4681 ggcctccatt acacttattg gagttccttc cgactcagaa gtgagcaaaa ccacatccaa
     4741 tgcggccatt acttccggca ttttcttctg ccaggaaaca aataaaacgg atgccgggtt
     4801 gcccgattgc atggcaccgc ttgcataagt caatcctaac tctttgcaat aagcaaggag
     4861 tgactgcctc aaaggcccat ctcccacaat aaggagttta acctggggga aacttgcctg
     4921 caattggcga aatgccaata gtcctaagcg atggtttttg atgggtacca aacggccaac
     4981 catccctaac acaaattcag aaggcgcaat gtggtatcga tacctgaagg cggcccgggc
     5041 cagttccgca ttgctttggg caaaaagggc aacatccacc ccaacgggta cgcagcctac
     5101 cttgttttcc ggtgcaattt ggtatctgta taccaaatca tttttctgac cctggctgag
     5161 tgccagcaat aaatggcttt tgccggcgag ccatcgttcg aaaaaaacga gcagtttgct
     5221 ttgccaggga ggaaaatacc cactgaacag caacccatga tacgtatgaa tgatgcattt
     5281 tacgccaatg cgtgatgcag ctatccggcc aataaagccg gcgactggag tatgcgtatg
     5341 aaccacatcg ggcttgaact gacgcagcaa cttcctgaca gtgacataag ttttccaatg
     5401 catccacatt ttccgcgtcc ggaagaaccc ggggatcatt tggtgggaaa tagtaccctc
     5461 tccattgagc aggtaggagg catcccattc gtgttcagcc ggcatgcctg tgatgagcat
     5521 cacttcatga cggtccttta aatacaaagc ctcgtcaatg gcatgggcag tagcaccacc
     5581 aacagccaac cggcctaata tgatggctat tcgggccatg aatggggtga aatggcagtt
     5641 ttaacttgat tgtggctgaa aaaaactgag gtaccaatcg ataaatcttg acacgccttc
     5701 gcgaactgtg gtttcaggtt tatacccgaa atcctgctcc aaagaagtag tatcggcata
     5761 agtggaagtc acatcgccgg gttgaagggg caagaggttc ttttcggctg tcctgcccaa
     5821 tttgctttct atggcttcga tgtattccat aagagagacc ggtgcactgt tgccaatgtt
     5881 ataaatccgg tatggtgccg aactcgaatc gctctccggg tgctgcggat cccagtgctc
     5941 gtttgatttc gccggctgct gaatcaccct tacaatccct tccactatgt catccacata
     6001 ggtgaaatca cgctgcatct tgccataatt aaaaacgtcg ataggtcggt tttcaagaat
     6061 agccttggtg aaaaggaaca gggccatatc tgggcgaccc catggtccat acactgtaaa
     6121 aaaccgcaag cctgtcgttg gcaatccata caaatggctg tacacatggg ccatcatttc
     6181 gttggccttt ttggtagccg catacaatga gatgggatga tctgcagcct cctttggcga
     6241 aaaggggctt ttctcattga ggccatacac actgctggtg ctggcataaa ccaaatgtcc
     6301 cacgtgatga tgccggcagc cttccaacaa attcatgaaa cccaccacat tggcatctac
     6361 atacgcatgg gggttggtaa cactgtagcg aacccctgcc tgtgccgcaa ggtttaccac
     6421 cgcatcaaaa gagtgctggg caaataactg catgactgct tcccgctctt ccaactgcaa
     6481 ctgcacaaag gcataatttg aatgcgcaat gctctgtacc agtcttccat attcaatctt
     6541 ttctcgttca ataccggcag cggatagtcg gccaaatttg agattcacgt catagtagtc
     6601 gttgatggaa tcaagtccaa tcacttcatg gccgtcattc actagtcttt ttgaaaggtg
     6661 gaatccaatg aacccagcag cgcctgtaac gagaattttc atattggtgg agattcgcaa
     6721 aaataagggg agggctactt tttgctgcag gagacctgat gctgcaggaa atattttatt
     6781 tgtcaggata agctacgcct ggtttttcct tttataccag gctaccattc ggctcaatcc
     6841 ttcctgcgtt gtgaactttg gcttgaagcc ttgtgcaaaa aggtcctgag ccctatggtg
     6901 ggtacgactg gcatatttcc tgacccgagc agtggagatg ggcaagtccc ttccagtaaa
     6961 cttacttatg atatcaaaag gcttggcaag caacaacagt acaatcaagg gaaaactctt
     7021 cggtttgggc ttgcccaatt cagcagcaat ggtcaggcct aattcagatg tcttcaaatg
     7081 tggctcgtcc gcataattgt agatatgcaa gccaaccggc aatcgatcaa ataggtaata
     7141 ggcagcatca accaggtttt ttacataggc gattgatttt atgttatccc ctttccccac
     7201 attgaaatac atgcctttgt tgatctggtc aatcagcctg aacatgttgg cttcatttcc
     7261 ttctccgtac accagtgcgg gtcgcagaat aatggcagtt cggttggaat tctgccgttg
     7321 ccaatcgatt acaagttttt cagcagccag ttttgaagcg ccgtaatcat tagtggggtt
     7381 gggcaccgtc tgatcattgg tgggctcatt ccgctcgcca tagacggcaa ctgatgaaaa
     7441 aaagacgatt ttctttacac cgaattctga agccagtttg caaatcactt cagtaccccc
     7501 ttcatttacc gaaaaatatt cctcctggtc gattccaaaa tctttatggg cggcagcaag
     7561 gtggatgata caactgacag gacctctcaa aaaagctgat cgcatatcgg cgatatttct
     7621 cacatcccct ttaatgaact cctggttggg ttcctgagta tcgggcgact ttacatctgc
     7681 aaccaacaac ggccattgcg caaacgcctg aaggagatgc gcaccaatga aacctgcccc
     7741 acctgttaca agaatttttc cccctttttc cattccaata aactatttgt atggcctatg
     7801 ctttgtacgg ctcatggctt tggaaacacc gactggtttg tcgttgattc tgcaccgctc
     7861 tcctcctttg ctacctgtcc caccacacca aacatgcacc ccaaaagctt ttcttcataa
     7921 ttcagccagg tataagccga tctgatcagc gatttcgcat tgcggccaac ctcttcaaaa
     7981 ggcaatcgat tggctacaat ttcatttatc ctgttggcca tgccctgcgg ataatcttcg
     8041 acaaaaaaat gagtgccatg tacagcccct actattggac ttcccgccaa tgaagtggta
     8101 atcacaattt
//
LOCUS       DATIQF010000726         2421 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_72245, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000726 DATIQF010000000
VERSION     DATIQF010000726.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2421
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72245"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1472)
                     /locus_tag="VLL95_12425"
     CDS             complement(<1..1472)
                     /locus_tag="VLL95_12425"
                     /inference="COORDINATES: protein motif:HMM:NF020249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR39714.1"
                     /translation="MSLAKILWVDDEIDSLKSQILFLQNKGYEVASLTNGFDAIDYVK
                     EHPLDVVLIDESMPGISGLETLAKIKSIKSTLPVVMITKNEAENVMEDAIGSQISDYL
                     IKPVHPSQVLLSLKKILDNKRLVSEKTTSSYQQEFRNLFMALNSNPDTAEWRDIYRKL
                     VYWEMEMDKSDSPEMREVFQTQKDEANTEFFKFISRHYADWVKSGSKETPVMSHTLIR
                     DKVLPALEKGTPTFFVLIDNLRLDQWQAIQPIFAESFRILEEDSFYSILPTATQYSRN
                     AIFAGLLPLDIAKQFPQHWKNDEDEGSKNLHEEEFLKAQLKRLGKGDLKVSYTKILTN
                     EAGQQLVNNIHNMMGNDLNVIVYNFVDMLSHARTEMEVLKELASDERSYRSITKSWFE
                     HSPLHEALKKIADKKLKLVLATDHGSIRVKTPAKVVGDRLTTANIRYKHGRNLNYEAR
                     DVLAFRDPKEAGLPSPTINSSYIFAKEDGYLCYPNNYNHFV"
     gene            complement(1756..>2421)
                     /locus_tag="VLL95_12430"
     CDS             complement(1756..>2421)
                     /locus_tag="VLL95_12430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39715.1"
                     /translation="CHRMIGCARVQPPCLGTGGSVFIHSPIFITMKNIRIMVAMLFLA
                     CATHMAYSQPTPVNQDSLILDASGKPMLLGKQTRQALLQPPFAEWFLANYQAYTVDSF
                     TCTFVKPLLAGKQLTLFLGTWCGDSRREVPRLLKMLDCCGYPMDQLTLVMVSNHANLY
                     KQSPGHEEAGRNILRIPTLIVEEQGMEVGRLVEYPVASLEKDLLAILRRDGYVPRYST
                     AAK"
BASE COUNT          507 a          603 c          659 g          652 t
ORIGIN      
        1 acgaaatgat tgtaattgtt gggataacag agatagccgt cttccttcgc gaaaatgtag
       61 ctgctgttga tggttgggct gggcagtcct gcctccttgg ggtcgcggaa ggccagcaca
      121 tcacgggcct catagttcag gttgcgccca tgcttgtagc ggatgttggc agtggtcagt
      181 cggtcaccca caactttggc gggtgttttt acgcgtatgc tgccatgatc ggtagccagc
      241 accagcttca gtttcttatc agcgatcttt ttcagggctt cgtgcaaagg gctgtgctca
      301 aaccagcttt tggtaatgct gcggtagctg cgttcgtcgc tggccagttc tttcagcacc
      361 tccatttcgg tgcgggcatg gctcagcatg tccacgaaat tgtacacgat cacattcagg
      421 tcgttgccca tcatgttgtg gatattgttc acgagctgtt gcccggcttc gttggtgagg
      481 atcttggtgt aactcacttt caggtcgcct ttgccgaggc gcttgagctg cgcttttaag
      541 aactcttctt cgtgcaggtt cttgctgccc tcgtcttcgt catttttcca gtgctgcgga
      601 aattgtttgg caatgtccag cggcaggagc ccggcaaaaa tggcgttgcg ggaatattgc
      661 gtagcggtgg gcaggatgct gtaaaaactg tcctcttcca ggatgcggaa actctccgca
      721 aagatgggtt ggatggcctg ccactggtcg agccgcaggt tgtcgatgag tacaaagaaa
      781 gtaggggtgc ctttctccag tgccggcagc actttgtcgc gaatgagggt atggctcatc
      841 accggcgttt ccttactgcc tgattttacc caatcggcat aatgtcggct gatgaatttg
      901 aagaactcgg tattggcttc gtccttctgc gtttggaaca cttcccgcat ttcagggctg
      961 tcactcttgt ccatttccat ttcccagtac accagcttcc ggtaaatgtc gcgccactcg
     1021 gcggtgtcgg ggttgctgtt gagcgccatg aacaggttgc ggaattcctg ctggtaactg
     1081 ctcgtggtct tttcgctcac cagccttttg ttgtcgagta tttttttgag actcagcaaa
     1141 acctggctgg ggtgtaccgg cttgatgagg tagtcgctga tctggctgcc gatggcatct
     1201 tccatcacgt tctcggcttc gttcttggtg atcatcacca cgggcagcgt gcttttaatg
     1261 cttttgatct tggccagggt ttcgaggccg ctgatgccgg gcatgctttc gtctatcagc
     1321 accacatcca gcgggtgctc cttcacgtag tcaatagcat caaagccatt ggtcaggctg
     1381 gccacttcgt accctttgtt ctgcaaaaac aggatctggc ttttcaggct gtcgatttca
     1441 tcgtctaccc acaatatttt ggcgaggctc atgttgctaa gttcagaggt tcaaggttca
     1501 aaagttccgg agtcccaaag tttacaagtt gggggctggc aatatgataa acttttgtga
     1561 cgattggcgg gaagagtgat acatcatcag catcaataat tcagtcagga acttttttaa
     1621 cgaatgacaa aggcttgtta tccatcaaaa atgaaacacc tgcaccaggc gcctgcagac
     1681 agcaattgaa atgttgtgcc tgccatgtcc tggcgcaggt gcatgcatct tcaggcacct
     1741 gtgcagatac cgttgctatt tcgcggcagt gctgtaccgc ggcacatatc catcacgcct
     1801 cagaatcgcc aggaggtctt tctccaggct ggcaacgggg tattccacca accggcctac
     1861 ttccatgccc tgctcctcca caataagggt gggtatccgc aggatgttgc ggcctgcttc
     1921 ttcatgaccg ggactttgct tgtacaggtt ggcatggttg ctcaccatca ccagggtgag
     1981 ctgatccata gggtaaccac agcagtcgag cattttcaac aggcggggta cttcacggcg
     2041 gctgtcaccg caccaggtgc ccaaaaagag cgttagttgc ttgcctgcca aaaggggttt
     2101 cacaaaggtg caggtaaatg aatccacggt gtaggcctgg taattggcca aaaaccactc
     2161 ggcaaaagga ggctgcaaca atgcttgccg ggtttgtttg cccagcaaca tgggcttgcc
     2221 actggcatcc aggataagag agtcttgatt gacaggtgtt ggttggctgt aagccatatg
     2281 agtagcgcat gccaaaaaca gcatggctac catgatgcga atgtttttca tggtaatgaa
     2341 gattggggaa tgaataaata ccgatccccc agtgcccagg catggtggct gcacacgggc
     2401 acaaccgatc atgcgatgac a
//
LOCUS       DATIQF010000727         1981 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_163569,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000727 DATIQF010000000
VERSION     DATIQF010000727.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1981
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163569"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..981
                     /locus_tag="VLL95_12435"
     CDS             <1..981
                     /locus_tag="VLL95_12435"
                     /inference="COORDINATES: protein motif:HMM:TIGR00797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HSR39716.1"
                     /translation="APEVASIAKPYFIVMAWGLVPMTFFLSLKQFSDALEFTKTGMLL
                     ALLSLPLNAFLNWVLIYGHFGLPRWELFGAGVATLLSRVIVALVLLAIIMRHKAYALY
                     VSLRQKAWHLHKSSLRDLLHIGLPSGWQMVMEAGAFSISGIMVGWLGATAQAAHQIAL
                     NLASTTFMAALGLSMGASIRVAHSYGAQDVPKLQRIGKSTIIGGLLYGVITAIAFILF
                     RQQLPLLFNDDAMVIALSAQLILVAGIFQVSDSLQAIGAGLCRGIKDVKVPSVLVTVA
                     YWIIGIPVGYLLAFKLHMGASGIWWGFVVGLSIAALLLNTRFLKESRQLT"
     gene            1076..>1981
                     /locus_tag="VLL95_12440"
     CDS             1076..>1981
                     /locus_tag="VLL95_12440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39717.1"
                     /translation="MPIINFSIDLHAHPNYKAFARAFRDDSDAPDAQSTSPSHPNSLW
                     FYNPPSIVDKAINKMLGVTKFSQANLTAALYGRVMVIVVGLGTTEKYFFRPKGGDDLI
                     EDLVVDFASGFKMPRINALQAMQDYWPDFMQENDYLLEMHDKPVRIDGHWYAYRWVNH
                     FEELAACRAQNEHDMAGQKKDHPLVVALIPSIEGLHVLGTGTERSFEEEEIIQRTLLL
                     KQLPNAPWFVTFSHHFYNHLCGHARSLRGVIGKMANQEEGINAGFTPLGLKVLRLLLD
                     ETQGRRILIDIKHMSAEARKTFIQMR"
BASE COUNT          451 a          527 c          503 g          500 t
ORIGIN      
        1 gcacctgaag tagcatctat tgcaaagcct tacttcatag tcatggcctg gggcctggta
       61 ccgatgactt tctttctatc gctcaaacaa ttcagcgatg cgctggagtt caccaaaacc
      121 gggatgttgc tggccctgct cagtcttccg ctcaatgcct ttctcaactg ggtgctgatc
      181 tatggccatt ttggattgcc ccgttgggaa ctgtttggcg ccggtgtggc caccttgctc
      241 agcagggtta ttgttgcctt ggtactgctg gccatcatca tgcgccacaa agcctatgcc
      301 ttatatgtga gtctccgtca gaaagcatgg catctgcaca aatccagcct gcgtgatctg
      361 cttcacatcg ggctgcccag tggctggcaa atggtaatgg aggccggcgc tttcagcatc
      421 agcggcatca tggtaggttg gctgggcgct acggcacagg cggcccatca aattgcactc
      481 aacctggcca gcaccacgtt tatggctgca ctgggcctca gcatgggtgc cagcatacga
      541 gtggcccact cctatggcgc acaagacgtg ccaaagctgc aacggattgg caagagcacc
      601 atcattggcg gtttattgta tggcgtcatc accgccattg cattcatttt gtttcgtcag
      661 caactgcccc tgctgttcaa tgatgacgcg atggtgattg cactgtcggc gcagctgatc
      721 ctggtagccg gcattttcca ggtaagcgac agtctgcagg ctattggcgc cgggctttgc
      781 aggggtatca aggatgtaaa agtgccatcc gtgctggtga cagtagccta ttggatcatt
      841 ggcattccgg ttggctattt gcttgccttc aaacttcaca tgggagccag cggcatctgg
      901 tggggttttg tggtcgggct ttctatagca gccctcctgc tcaatacccg tttcctcaaa
      961 gaaagccggc aactgacctg agtttatcca aggcaacagg cttccagcat tttctgcaat
     1021 ggcttgcaag taccagggag agattgtagc ttaaaggtta ctaatcctct tactcatgcc
     1081 tatcatcaac ttctccatcg acctgcatgc ccaccccaat tacaaagcat tcgccagggc
     1141 ttttcgcgac gattccgatg cacctgatgc ccagagcacc agtccttctc atcccaacag
     1201 cctttggttt tacaatcctc cttctattgt cgacaaggcc atcaacaaaa tgttgggtgt
     1261 caccaaattt tcacaggcca atcttaccgc agcgctctat ggccgtgtga tggtcattgt
     1321 ggtggggctt ggtaccactg aaaaatattt cttcagaccc aaaggcggcg acgatcttat
     1381 tgaagacctg gtggttgatt tcgcttctgg gttcaaaatg ccacgcatca atgccctgca
     1441 agccatgcag gactactggc ccgatttcat gcaggaaaat gattacctgc ttgaaatgca
     1501 cgacaaacct gtgcgcatcg atggccactg gtatgcttac cgatgggtga accattttga
     1561 agaactggcg gcctgcaggg ctcagaatga gcatgatatg gcaggtcaga aaaaagacca
     1621 cccacttgta gtagccctga ttccttcgat tgaaggcctg catgtgctgg gcaccggcac
     1681 cgaacgcagt tttgaggaag aagagatcat acaacgcacc ctccttttga agcaacttcc
     1741 caatgccccg tggttcgtta cattcagcca tcatttttac aaccatctgt gcggccacgc
     1801 ccggagtttg cggggcgtga tcggtaaaat ggccaaccag gaagaaggga tcaatgcggg
     1861 cttcacgcct ttgggattaa aagtgctgcg cttattgctc gatgaaaccc agggcagaag
     1921 aatattgatt gacatcaaac acatgagtgc cgaagcccgg aagactttca ttcaaatgcg
     1981 g
//
LOCUS       DATIQF010000728         9381 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_224547,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000728 DATIQF010000000
VERSION     DATIQF010000728.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 9381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9381
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224547"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..251
                     /locus_tag="VLL95_12445"
     CDS             <1..251
                     /locus_tag="VLL95_12445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39718.1"
                     /translation="NYIWECSCLSGVVDLPVLHQQLSFIVHAAYYAYYGLHPQTAQVG
                     NLLAGQFLLIGSNSMLVFTGLMVAEKMEGRNGPFNCAI"
     gene            312..1529
                     /locus_tag="VLL95_12450"
     CDS             312..1529
                     /locus_tag="VLL95_12450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39719.1"
                     /translation="MMTFNASKWTKTTLYGLLVVAFLGALMRYKIAFEFPFFNQKNLQ
                     HGHSHFAFSGWVSQMLMIFLVHLIRQSTSRLQRYRQILILNLALAYGMLFSFMMQGYG
                     SVSIALSTASILLSFYFAYCYWKDLRNNPAVIQKFWFAIALACNLLSSAGTLVLAWMM
                     ATKSFDQHTYLASLYWYLHFQYNGWFFFSCMGLFVQYFHHLTGISITKNVGLLLGASV
                     LPAYGLSTLWLPLPWWLYLIIVLASITQFAGWMLFLKQTVSKKYYSTLVPLARWLLIY
                     LVIASTLKICLQLGSVIPAVSKFAFGFRPVVIAYLHLALLAITTIFLLTYSLLKEFIP
                     GNRLIRQGIILFAAGVLLNEGVLGIQGIASITYTVIPYANEILFAIALVMLMGLVMLI
                     RGWGKSVSTSALV"
     gene            1590..2156
                     /locus_tag="VLL95_12455"
     CDS             1590..2156
                     /locus_tag="VLL95_12455"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HSR39720.1"
                     /translation="MKRIFLGNVLLLALLAASCNSGGSETQATSTTTEAAPAPAVGQS
                     GVKDDVSKPNIVQIAVGSKDHTTLVTAVKAAGLVDALSNAGPFTVFAPTNAGFDKLPA
                     GTVEGLLKPEKKGDLENILGYHTYVGVLQGALLQDGMEYDMVFGGKVKITKQGDKTFV
                     NGKEIVASVPASNGIIHIINEVLLPPAK"
     gene            complement(2235..2612)
                     /locus_tag="VLL95_12460"
     CDS             complement(2235..2612)
                     /locus_tag="VLL95_12460"
                     /inference="COORDINATES: protein motif:HMM:NF013331.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group III truncated hemoglobin"
                     /protein_id="HSR39721.1"
                     /translation="MKKDITTKKDIKLLVDSFYDKVRPDPVIGHFFSRVVAVDWEKHL
                     PVMYSFWENVLFHKGSYSGNPMVQHQALHQKSKMTTEHFKRWLHLFNETVNDLFEGDN
                     AEIIKQRALSIATVMQIKIIHAS"
     gene            complement(2662..3429)
                     /locus_tag="VLL95_12465"
     CDS             complement(2662..3429)
                     /locus_tag="VLL95_12465"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HSR39722.1"
                     /translation="MKRITQFVLTDILRNRIIIGYAVLMAVLSWTVFNMEDSGNKGVL
                     TMLNTVLLVVPLVSILFSTIYIYNSSEFIELLLSQPVKRHQIWVSLFLGLSLSFVTAF
                     VIAVGLPLFLFAPLWQACLLLLTGCLVSVIFVAIAFLSAIFSRDKAKGIGISILLWLY
                     FALLFDGLVLFIIFQFSDYPIEKPMVLLSATSPLDLARILNLLQIDASAMMGYTGAIF
                     KDYFGTGAGFVLAIVVLVLWAVLPFWWSLRIFKRKDL"
     gene            complement(3426..4145)
                     /locus_tag="VLL95_12470"
     CDS             complement(3426..4145)
                     /locus_tag="VLL95_12470"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR39723.1"
                     /translation="MASLVTIERVSKKFGKLQVLDNIQLECRQGASIALIGPNGCGKT
                     TLIKCILNMVIPDSGIILFDGRDLKGDVQYRKHIGYMPQIGRYPENMNVGQVLETIRN
                     LRNDNSGIDEDLYHAYRMNDLLGKRMSTLSGGTRQKVSAVIAFMFDPKVLILDEPTAG
                     LDPLAADILKEKINVERKKNKLVLITSHLLSELDEIISEVIFMQDGVVRFHKHTDALK
                     ADTGKESISKAISHILKEELV"
     gene            complement(4130..5215)
                     /locus_tag="VLL95_12475"
                     /pseudo
     CDS             complement(4130..5215)
                     /locus_tag="VLL95_12475"
                     /inference="COORDINATES: protein motif:HMM:TIGR04247.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide reductase family maturation
                     protein NosD"
     gene            complement(5368..6387)
                     /locus_tag="VLL95_12480"
     CDS             complement(5368..6387)
                     /locus_tag="VLL95_12480"
                     /inference="COORDINATES: protein motif:HMM:NF017394.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide reductase accessory protein NosL"
                     /protein_id="HSR39724.1"
                     /translation="MKGNKLTLFSRLLALLGAVALLVAIFVPLWRIELDAPQYPEGLA
                     LLIYPHKLGGDVEIINGLNHYIGMQTLHAENFVEFTVLPYIIGFFALLFLSVAIISKR
                     RWLNVVFFTFVFFGIIAMVDFWRWEYNYGHELDPNAAIKVPGMAYQPPLIGFKQLLNF
                     GAYSIPDTGGWMFIAAGIFLLLAVLAEGGYLKKLGVRKNAVVILFFSALGFASCNSGG
                     PEPIAFNSDKCAHCRMTISDARYAAELQTVKGRINKFDDVVCMTRYLRENQSAPAKKL
                     WVSQYDGNHSLIDANEAFFVKLETLNSPMRGNMAAFADKRSAAELLNTSGAELVDWNE
                     LVKEP"
     gene            complement(6469..8487)
                     /gene="nosZ"
                     /locus_tag="VLL95_12485"
     CDS             complement(6469..8487)
                     /gene="nosZ"
                     /locus_tag="VLL95_12485"
                     /EC_number="1.7.2.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR04246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050304 - nitrous-oxide reductase activity
                     [Evidence IEA];
                     GO_process: GO:0019333 - denitrification pathway [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-dependent nitrous-oxide reductase"
                     /protein_id="HSR39725.1"
                     /translation="MKKQHLSLSVLALIMAATGFLFESCKPKNAGSVAVGDAAKAYVP
                     PGKHDEFYNFVSGGFSGQMSVYGLPSGRLFRVVPVFSVDPEKGWGYSEETKPMLNTSH
                     GFVPWDDLHHTELSQTNGEIDGKWVFANANNTPRLARIDLKTFRTAEIIELPNSGGNH
                     SSPFGTENSEYIVAGTRFSVPADDADGDVPINTYKQNFKGHISFVSVAKETGEMNLAF
                     QIKTPGVNFDLARAGKDKSHGWFFFSCYNTEQANTLLEVNASQRDKDFIMAVNWKKAE
                     EYLKAGKGRKAKVKYAHNKWNDETHSATSEIKNEVIVLDAAELKDICYFIPCPKSPHG
                     CDVDPTGEYIVGSGKLAALIPVFSFDKIQKAIAAKAFDGEYEGIPVIKYEEALYGEVQ
                     KPGLGPLHTEFDGKGNAYTSFFVSSEVVKWNIKDLKVVDRAPTYYSVGHLCIPGGNTR
                     KPSPKYLIAYNKITKDRYLPTGPELAQSAQLYDISGEKMQLILDFPTIGEPHYAQAAP
                     ADVIKNNGQLKIFPIEKNKHQHLAKGEAESKVVREGNKVHVYMTSIRSHFAPDNIEGV
                     RLGDEVYFHVTNLEQDWDVPHGFAIKGASNAELLIMPGETATLKWVPDRVGIFPMYCT
                     DFCSALHQEMQGYVRVSPAGSNVPLTWSVGTNQPKADAAAPAPAAPKK"
     gene            complement(8517..9008)
                     /locus_tag="VLL95_12490"
     CDS             complement(8517..9008)
                     /locus_tag="VLL95_12490"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HSR39726.1"
                     /translation="MKKLLQAGMVAGATILFFACGGGDTNPANENGGGSEPPKSMVAD
                     ASSYDPKRGEGKFNESNVTIGALDAAMAAKGEAISGTKCFSCHKTTDEKLVGPGWKGV
                     TERRTPFWIMNFITNPDPMIDKDPEVQAQLELCLVRMPNQSLTDEDARHVLEFMRKSD
                     GAK"
     gene            9187..>9381
                     /locus_tag="VLL95_12495"
     CDS             9187..>9381
                     /locus_tag="VLL95_12495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HSR39727.1"
                     /translation="MFFLHGTSSTDKLMVSIDLLLAYGATYRKVKRQEFIFKEGQMAS
                     FLYVIEEGRVKMFNINDEERE"
BASE COUNT         2345 a         2347 c         2125 g         2564 t
ORIGIN      
        1 gtaattacat ctgggaatgc agctgccttt caggagtagt agatcttccg gttctccacc
       61 agcagttgtc cttcatcgtg catgcggcgt actacgcgta ttacggtctc cacccgcaga
      121 ccgcacaggt cggcaatttg ctggcgggtc agtttttgct tatcgggtcc aattcaatgc
      181 tggtattcac gggattgatg gttgctgaaa aaatggaggg ccgcaatggc cctttcaatt
      241 gtgcaatatg actgcacgca tatcaggccc aattgagtgc ctgtagattg cacaaaaaag
      301 gcaacgcaac aatgatgacc ttcaatgcat caaaatggac gaaaaccacg ctatacggct
      361 tgctggtagt ggcattcctg ggagccctca tgcgctataa aatcgccttt gagtttccct
      421 tttttaacca gaagaacctg cagcacggcc actcacattt tgcattcagc ggatgggttt
      481 cgcaaatgct gatgattttc ctggtgcatt tgattcgcca atccaccagc cgactgcagc
      541 gataccggca aatactcatt ttgaacctgg cattggcata cggcatgctt ttctctttta
      601 tgatgcaggg atatggtagc gtttccattg ctctttctac cgcctccata ctgctttcct
      661 tttattttgc ctattgttat tggaaagacc tgcgcaacaa cccagccgtc atacaaaagt
      721 tctggtttgc catagcgctg gcctgcaacc tgctttcatc agcgggaact ttggttttgg
      781 cctggatgat ggctaccaaa tcattcgatc agcataccta cctcgcctcg ttgtactggt
      841 acctgcattt tcaatacaac ggttggttct ttttttcatg catggggcta ttcgttcaat
      901 attttcatca cctcaccggc attagcatca ccaaaaatgt cggcctgttg ctgggcgcca
      961 gtgtactgcc cgcttatggg ctgagcaccc tttggctgcc gctgccgtgg tggctttatc
     1021 tcatcattgt tttggccagc atcactcaat ttgccggatg gatgctcttc ctgaaacaaa
     1081 ccgtttccaa aaagtactat tctacgctgg tgccattggc acggtggctc ctcatttacc
     1141 tggttattgc cagtaccctc aaaatatgcc tgcaactggg atcagtcatt ccggccgtaa
     1201 gcaaattcgc ttttggtttc aggccagtgg tcattgctta cctgcacctt gccttgctgg
     1261 ccatcaccac catctttctg cttacctatt cgctgctcaa agaattcata cccggtaacc
     1321 ggctcattcg ccagggcatc attctttttg ctgcaggcgt tttgctgaat gaaggggtgc
     1381 tgggtatcca gggcattgcc tccattacat acacggtcat accctatgcc aacgaaattc
     1441 tttttgcaat agccctggtg atgttgatgg gccttgtcat gctgatccgg gggtggggaa
     1501 aatctgtctc tacaagcgca ttagtatgat tgcaatcata aagctggaat catgtgagaa
     1561 agtaggtttg acaaataaat gttaaccaca tgaaaagaat attcttagga aacgtgttgc
     1621 tgttggccct cctggctgcc tcatgcaaca gcggcggttc agaaacgcag gcaacctcta
     1681 ccaccaccga agcagcaccc gctccagcgg ttggccagtc gggcgtaaaa gacgatgtgt
     1741 ccaagcctaa cattgttcag attgccgttg gcagcaagga ccatacaact ttggtcacag
     1801 cggtgaaggc agcaggactg gtagatgcgc tcagcaatgc cggccccttc acggtttttg
     1861 cacccaccaa cgccggcttc gacaaactgc ctgcgggcac tgtggaaggc ctgttgaaac
     1921 cagaaaagaa aggagatctt gaaaatattc ttggctacca tacctacgta ggcgtattgc
     1981 agggggcttt gcttcaggac ggaatggaat acgacatggt ttttggcggc aaagtaaaaa
     2041 ttaccaaaca gggcgataag acatttgtaa acggcaaaga aatagtagcc agcgttcccg
     2101 cttctaatgg catcatacat atcatcaatg aagtattgtt gcccccagca aaatagttat
     2161 ttggattgtt cgtgattttt tggtgatgaa ggtgcgaatt tcaattcgca ccttttttca
     2221 tttcatggtt cacgctacga tgcgtgaatg atcttgattt gcatcaccgt ggctatgctc
     2281 aatgcccttt gtttgatgat ttcagcattg tcgccttcaa acaaatcatt cacggtttca
     2341 ttaaacaaat gcaaccagcg cttgaaatgt tcagtagtca ttttgctttt ttggtgcaaa
     2401 gcctggtgct gaaccatggg gttgccactg tagctgcctt tgtgaaacaa tacattctcc
     2461 cagaaagaat acatgaccgg cagatgcttc tcccaatcta ccgctactac tctgctgaaa
     2521 aagtgaccga tcaccggatc gggtcttacc ttatcgtaaa aagaatccac cagcaatttg
     2581 atgtcctttt ttgttgtgat gtcctttttc attttagttc agaaactgtt gagaactgtg
     2641 atcaaaatga aacaagtgtt tttacaaatc cttgcgttta aagatgcgga gcgaccacca
     2701 gaatggcagc accgcccaaa gcaccaatac cactattgcc agcacaaaac ccgcacccgt
     2761 tccgaaataa tccttgaata tggctcctgt gtagcccatc attgccgagg catctatttg
     2821 cagcaggttg agtatgcggg caaggtcgag cggactggta gccgacaaca acaccatggg
     2881 cttttcaatt ggataatcgg aaaactggaa aatgatgaat aacaccaacc cgtcgaacaa
     2941 caaagcgaaa tacaaccata gcaaaatgga tatgccgatg cctttggcct tgtcgcgact
     3001 gaagatggcc gacaaaaatg caatggccac aaatattacc gaaaccaggc accccgtcag
     3061 caaaagcaag caagcctgcc agagcggggc aaaaagaaac aatggcaaac ccactgctat
     3121 cacaaaagcg gtcacgaaac tgagtgaaag accaaggaag aggctcaccc agatttggtg
     3181 ccgcttcaca ggctggctca atagcagttc aatgaattcg gaactgttgt agatatagat
     3241 ggtagaaaac aaaatggaaa ccaaaggaac caccagcaaa acggtattga gcatggtgag
     3301 cactcccttg ttgccgctgt cttccatgtt gaacaccgtc cacgacagta ccgccatcag
     3361 taccgcatac ccgattatga tccggttgcg cagtatatct gtcagtacaa attgggttat
     3421 gcgcttcata ccagttcctc cttcagtatg tgtgaaatgg ctttggaaat actctccttg
     3481 cccgtatccg ctttaagcgc atcagtatgc ttatgaaacc tgactacacc atcctgcatg
     3541 aaaatgactt cagaaatgat ttcatccagt tcgctcagca agtgggaggt gatcagcacc
     3601 agtttgttct tctttcgttc cacatttatt ttttctttca ggatatccgc tgccaatgga
     3661 tcgagcccgg cggtaggctc atccagaatc agcactttcg ggtcgaacat gaaggcaatg
     3721 accgcactca ctttttgccg ggttcctccg ctgagcgttg acattcgctt gcccagcaga
     3781 tcgttcattc tataagcgtg atacagatct tcatcaatgc ctgagttatc atttctcaga
     3841 ttgcggatgg tttccagtac ctgccctacg ttcatgtttt cgggatacct tcctatttgc
     3901 ggcatatagc ctatatgctt ccggtattgt acatcgcctt tcaaatcacg accatcaaac
     3961 aaaatgatgc cactgtcagg gatcaccatg ttgaggatgc atttgatgag ggtggttttt
     4021 ccacatccgt tggggccaat cagggcaatg gatgcgcctt gccgacactc cagttgtatg
     4081 ttgtcaagca cctgcagttt gccaaacttt ttgcttactc tttctatcgt taccaatgat
     4141 gccatgcctt cattctgggt gattcgtcaa taaaattatc aggggtcagg ctgggaaata
     4201 tcttttcaga gcgatccagc aggctgacca aaaaacttcg aaacaacaac atggcagcag
     4261 ggttcttttc cactacgatg gcatacatgc tcagcggccg gtagggtaca tctcccaccc
     4321 cgtccctgtt caggtcgtat ccttcgtatt tgtcccaata gttggatgca aacttgttga
     4381 gcactacagt cccattggtg ccgatgtcga aagtattgcc caggaaattg ttggcgctaa
     4441 tggtattgtc catgcaactg gcttgcacct gcatggccca gccgttgttt tcaaattcat
     4501 tgcgctccag caatatcctg ttcgttcctt ccatccagat gcccgatgta tttctccgaa
     4561 aacggttgcc gctgatatga ctgtctgaaa tttctttcag cagcaaacca taagcggcat
     4621 cgccccagtt ttcttcaaag ctattgttca tcatggtcac tcgcttggta aacatcactg
     4681 ccacccctgc gccattggcc cgaaagatgt tggtgaagta actgtcattg ttggagaaca
     4741 tgaagtgcaa tccataacgg atgttgtggt gcgacaggtt tcgccaaata actgagttgg
     4801 ttacaaactc gaaataaatg ccgtcgcggt gacccgaaat attgttgtgt ataatgcgga
     4861 ggctgtcgct tttccagcag tggatgccat tgccgatctc ctgctccgct ttgccaaacg
     4921 ccaccagtgt attgtccttg attacgcagt gcttgccgta ctgcacataa atgccgaaga
     4981 aattatcgta cagcacattg ttttcaatta ctacataatt acagtcctgc actttgattc
     5041 cgccgggatc atcgagggtg gcatagcctg agtgctgtac atgcaaaccc tttatcaaaa
     5101 cgctgtcggc tttcacggta atgacttcaa attttcggtc accgtctatc accggcaggt
     5161 tgtgcccgat gagggcaatt ctcttgtcaa taacgatgtt gccttctttg taaacgccgc
     5221 cttttactta aaccgtatcg cccggccggg cggcagctat tgcagcctta atggtgcgga
     5281 atgcaccttg tttgcctacc accagttgcc ttgcaaaagc atgggtggct gaaaaaaaac
     5341 ataggaaaaa gaataatcgt tgcatcatca gggttccttc accaattcat tccaatctac
     5401 caactctgcg ccacttgtat tcaacaattc ggcggcggaa cgtttatcgg caaacgcagc
     5461 catattgccc cgcataggag aattcaaagt ttccagtttt acaaaaaaag cttcgttggc
     5521 atctatgagt gaatgattgc catcgtactg gcttacccag agttttttgg ctggtgccga
     5581 ttggttttcc cgcaggtacc ttgtcatgca caccacatcg tcaaatttat tgatgcgccc
     5641 tttcacggtc tgcaattcag cagcataccg ggcatcggaa atggtcattc tgcaatgggc
     5701 acatttgtcg ctgttgaagg cgatgggctc aggcccgcca ctgttgcagg aggcaaaacc
     5761 caatgcggaa aagaaaagga ttactacagc atttttgcgg actcccagtt tcttcaggta
     5821 ccccccttcg gccaacaccg ccaacagaag gaaaatacca gcggcaatga acatccaccc
     5881 accggtatca ggaatggagt aggccccaaa gttcagcaac tgcttgaagc cgataagagg
     5941 aggttgataa gccatgccgg gcactttgat ggcggcattc ggatccagtt catgcccata
     6001 attatattcc caacgccaaa agtcgaccat ggcgataatg ccaaaaaaaa cgaaggtgaa
     6061 gaacaccaca ttcagccacc tgcgtttgct gatgatggca acgctgagga acaacagagc
     6121 gaaaaaacct atgatgtatg gcaacacagt aaattcaaca aagttctcag catgcagggt
     6181 ttgcataccg atatagtggt tcaatccatt gatgatttcg acatcgcccc ccaatttgtg
     6241 agggtaaatc agaagggcca ggccttccgg atattgtgga gcatcgagtt caatacgcca
     6301 aaggggaaca aatattgcta ctaacaacgc tacagccccc agcaatgcca gcagcctgct
     6361 gaaaagcgtc aacttatttc ctttcataca aaaccatttt taaagaaagg ggaacaggaa
     6421 ccctgtttga gcgcctgttc cctctctcca ttgtcaattg ctccagcctt atttcttagg
     6481 tgctgcaggc gctggtgcgg ctgcatcagc ttttggctga ttggtaccca cactccaggt
     6541 caatggcaca ttgctgccgg caggcgatac tctcacatag ccttgcattt cctggtgcag
     6601 ggcgctgcag aaatcggtgc aatacatggg gaatataccc accctgtcag gcacccactt
     6661 caaagtagct gtttcgcccg gcataatcag cagttcggca ttgctggctc ctttgatggc
     6721 aaaaccatga ggcacgtccc aatcctgttc aaggttagtg acatggaaat atacttcatc
     6781 acccagcctg actccttcaa tgttatcggg ggcgaagtgc gaacgaatag aggtcatgta
     6841 aacatgtact ttattgcctt cacgtaccac tttcgattct gcttctcctt tggccaggtg
     6901 ctggtgtttg ttcttttcaa tcgggaagat ctttaactgg ccattgttct tgattacatc
     6961 agcaggagca gcctgcgcat agtgcggctc accaatggtg gggaaatcaa ggatcagctg
     7021 catcttctct ccactgatgt catacaattg tgcactttgc gccagttcag gacctgtagg
     7081 caggtagcgg tctttggtga tcttgttgta ggcaatcaaa tatttgggag aaggcttgcg
     7141 ggtgttgcca ccagggatac agaggtgacc cactgaataa tacgtaggag ccctgtccac
     7201 cactttcaaa tccttaatat tccactttac tacttcgctc gatacaaaga aagaagtgta
     7261 ggcattgcct ttgccgtcaa actcggtatg caaaggtcca aggcccggct tctgcacttc
     7321 accgtagagt gcttcttcat atttgatcac aggtatgcct tcgtattcgc catcaaaggc
     7381 ttttgcagca atggctttct ggattttgtc gaagctgaat accggtatca aagccgccag
     7441 tttgccgctg cccacgatgt attcacctgt aggatccacg tcgcaaccat ggggtgactt
     7501 ggggcaagga ataaagtagc agatgtcttt caattcggcc gcatccaaca ctatcacttc
     7561 attcttgatt tctgaagtgg cagaatgcgt ctcatcattc catttgttat gggcatactt
     7621 cacttttgct ttccttccct tgccagcctt caggtattcc tcggcttttt tccagttcac
     7681 tgccataatg aagtctttgt cacgctgcga tgcattcact tccaacaaag tattggcttg
     7741 ctcggtattg tagcagctga agaaaaacca tccatgcgat ttgtctttac cggcacgtgc
     7801 caggtcaaag tttacgccgg gtgttttgat ttggaaagca aggttcattt cgccggtttc
     7861 tttggccacg cttacaaagc tgatgtgacc tttgaaattt tgcttgtagg tattaatagg
     7921 cacatcacca tcagcatcat cggcaggaac gctgaaacgg gtacccgcta caatgtactc
     7981 agagttttca gttccaaaag gagaactgtg gttaccaccg ctgtttggca gctcaatgat
     8041 ctccgcagtg cggaaagttt tgaggtcgat acgagccaaa cggggcgtgt tgttcgcatt
     8101 ggcaaaaacc catttgccgt cgatttcacc attggtctgg gaaagttcag tatggtgaag
     8161 gtcatcccag ggcacaaaac catgtgaagt attcagcatg ggtttggttt cctcgctgta
     8221 gccccaacct ttttcgggat caaccgaaaa caccggcact acacgaaaca ggcgtccgct
     8281 gggcaaacca taaacgctca tttgcccact gaatccgccg gatacgaaat tgtaaaattc
     8341 gtcgtgcttg ccaggtggta cgtaagcctt agccgcatcg ccaacagcca cgctgcctgc
     8401 gttttttggc ttgcatgatt caaataagaa gcctgtggcc gccatgatca gcgccaacac
     8461 ggaaaggctc agatgttgct ttttcatatt gttgttttag atgggtaatt gcatgtttat
     8521 ttggcaccgt cgcttttgcg catgaattcc agcacatgac gggcatcttc atcggtaaga
     8581 ctttggttgg gcatgcgcac caggcacaat tccagttggg cctgcacctc cgggtctttg
     8641 tcaatcatgg gatctggatt ggtaatgaag ttcatgatcc aaaagggcgt tctgcgttct
     8701 gtaacacctt tccaacccgg ccctaccaat ttttcatctg tcgttttatg acatgaaaaa
     8761 cacttggtgc cggaaatggc ttcaccctta gcggccatgg cagcatccaa tgctcctatt
     8821 gtgacattgc tttcattgaa ttttccctcg ccccgcttgg gatcataaga agatgcatca
     8881 gcaaccatgc tcttgggtgg ttcggaaccg ccgccgtttt cattggcagg gttcgtgtcg
     8941 ccccctccac aagcaaaaaa caggatggtt gctccggcta ccattccggc ctgaagtagt
     9001 tttttcatgt tgattgttct ttttgtttga attgccgaca aagctatttt ggcctcatta
     9061 cctaccttta tgactgcaat cataataggg ctggcgcact ttcggattct gcctcacaaa
     9121 actgacataa gtcattcttt actcattcca gtttccactt attgccaagt ccaccaatac
     9181 gctcctatgt ttttcctgca cggaacatcc tctaccgata aactcatggt cagcatcgac
     9241 cttctgcttg cctatggtgc tacctacaga aaggtgaagc gccaggagtt tattttcaaa
     9301 gaaggacaaa tggcatcctt tctttatgta atagaagaag gacgggtaaa aatgttcaac
     9361 atcaatgatg aagagcgtga g
//
LOCUS       DATIQF010000729         3974 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_102583,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000729 DATIQF010000000
VERSION     DATIQF010000729.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3974
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102583"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            251..1129
                     /locus_tag="VLL95_12500"
                     /pseudo
     CDS             251..1129
                     /locus_tag="VLL95_12500"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
     gene            1141..2064
                     /locus_tag="VLL95_12505"
     CDS             1141..2064
                     /locus_tag="VLL95_12505"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HSR39728.1"
                     /translation="MSSIPKSNTARDNSADSPVKKGMPGWLKLLLKLVVSGGCLWYVG
                     QKIDWADTWRLLKTSNVLWLLFATLFFVLSKVVSSFRLNLYFRNIAVHLSEMVNLKLN
                     WLSLFYNLFLPGGIGGDAYKVILLNKRYPGTGARKLTAAVFLDRVSGVAGLGILAAVF
                     YFLVFQPAWHAWALVVSIVPGVFIFLFVVKKWFPSFVSSFFPTLWYGLAVQLLQVICV
                     FGIMQSIGIHHHFAEFQLLFLVSSIVSILPFTIGGLGAREVVFLWGSQQFSLVQSEAI
                     FISLLFYLITLVSSLVGIYWVYKSPFDDNEK"
     gene            complement(2088..2291)
                     /locus_tag="VLL95_12510"
     CDS             complement(2088..2291)
                     /locus_tag="VLL95_12510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39729.1"
                     /translation="MRKQTHHSGNPPTFTKTGKSNDMIKVENNQPLIKLTHAKAKERH
                     IVRHTFSRVRNAWEMNVNSLEFE"
     gene            complement(2405..3169)
                     /locus_tag="VLL95_12515"
     CDS             complement(2405..3169)
                     /locus_tag="VLL95_12515"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR39730.1"
                     /translation="MKKIVLITGATSGFGKAMAEAFARAGFDIIITGRRKERLDALQA
                     SIESPGQARCLSLCFDIRDRDACFEAISSLPADWQPIDILINNAGGAWGRDRVTDASL
                     DDWEIMMDTNVMGLMYITKAVLPMMTERRQGHIINIGSIAGKEPYEFGNGYNAAKFAV
                     EGLSKALRIDLLPFNIKVTHIAPGAAETEFSLVRFKGDESKAAAIYKGYQPLSAEDVA
                     GIVLYTATLPPHVCINDLVVTPTAQANSYNIYKSTT"
     gene            complement(3220..3399)
                     /locus_tag="VLL95_12520"
     CDS             complement(3220..3399)
                     /locus_tag="VLL95_12520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39731.1"
                     /translation="MNSNLFANSKDEFKSWTGLDASENPVAYVEFVKMLAQELVYETL
                     KEIKQELIAIKNKID"
     gene            complement(3474..>3974)
                     /locus_tag="VLL95_12525"
     CDS             complement(3474..>3974)
                     /locus_tag="VLL95_12525"
                     /inference="COORDINATES: protein motif:HMM:TIGR04131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type B sorting domain-containing protein"
                     /protein_id="HSR39732.1"
                     /translation="VYNQTLQFNAATNASQIRWSPATALSNPNIANPQAVFRQGILPA
                     GIDTIRYIITASTPEGCSATDQVLVKVFSTSPSIFVPNGFTPNNDGLNDVLRPSLPGM
                     RELVFFRIYNRYGQLVFETKQIGKGWDGRINGILQASATFVYQCQAVDFEGNNVSAKG
                     SFILIR"
BASE COUNT          832 a          984 c         1084 g         1074 t
ORIGIN      
        1 agccttgagc tggctggatt gcaactgcat cacgggttca agagctggca ttaatgtatt
       61 cgatcgtttt gttgtggtgg aaggagttgc ccgggcagct ccttcttttt ttacttcggt
      121 tttgctgtcg ctgccggcca atgtactgcc tgagcgcctt acactatctt tgccgcttat
      181 gagccaaacc taccagcggt acctgagtgt tgtggtgccg gtcatgaacg aggaggacaa
      241 tgtgcaaccc atggtgaaag ccgtggatgc tgccttgcag gggtatgact atgaattgat
      301 ttttgtggat gatggcagca ccgataaaac cagggagcgc atcaaagccc tgctcaccga
      361 tcgcatccgc ctgattgagc tgcgcaagaa ctatggccag agcacggcca tggcggctgg
      421 catcgaccat tgcacaggtt aattcatcac catgctcgat ggcgatctgc aaaacgatcc
      481 cagcgacatc ccgatgatgc tggaaaaact gctgcaggaa gaatgggatg tggtagccgg
      541 caaccgtgcc aaccggcagg atggcgcttt gctgcgcaag atccccagca aaatcgccaa
      601 cgccatcatt cgccgctgga ccggggtgta catcaaagat tacggctgca cgctgaaagt
      661 gttccgggca gagatagcac aggaactggg tttgtatgga gagttgcatc gcttcatccc
      721 ggtgctggct gccatgcagg gagcccgcat cacgcaggtg gatgtgaagc accatgcccg
      781 ccgttttggc aaaagcaaat acggcatagg ccgcaccacc cgtgtgatga gtgatttgat
      841 tacgatggtg tttttccgca aatacataca gcggcccatg cacctgtttg gtggtttggg
      901 ttttgccagc ctgttccttg gcattgtcat caacctgtac ctgctggtgg tgaaactgat
      961 gggccacgac attggcggca ggcccttgct ggtagccggc atggtgttcc tgttgggggg
     1021 tatccaactc atcaccattg gtattgtggc ggaggtaagc attcgcaatt atttcgaagg
     1081 cagtggccgc aagacctata acatccgcaa aatttacagc aaggactaac ccgcattgtt
     1141 ttgagttcga tcccgaaatc caatactgcc cgcgataaca gcgccgacag cccagtgaaa
     1201 aagggcatgc ccggctggct gaagctgctc ctcaaactgg tagtgtcagg cggttgtctt
     1261 tggtatgtgg ggcagaagat cgactgggcc gatacctggc gattgctgaa gaccagtaat
     1321 gtactctggc tgctttttgc tacgctgttt tttgtgctga gcaaagtggt atcctctttc
     1381 aggctgaacc tgtatttccg gaacatagcg gtgcacctgt ctgaaatggt gaacctgaag
     1441 cttaactggc tttccctgtt ctacaatctc ttcctgcccg gcggcattgg cggtgatgct
     1501 tacaaggtga tcctgctgaa caagcggtac cctggcaccg gcgcccgcaa actgaccgcg
     1561 gcagtgttcc tggaccgggt gagcggcgtg gcgggactgg gcatactggc agctgttttt
     1621 tactttcttg tatttcagcc ggcatggcat gcctgggcgc tggtagtctc cattgtaccg
     1681 ggcgtattca ttttcctgtt cgtggtgaaa aaatggtttc ccagttttgt gtcgagcttt
     1741 tttcctacgc tgtggtatgg attggcggtg cagttattgc aggtcatctg cgtgtttggc
     1801 atcatgcagt ccatcggcat ccatcatcat tttgccgaat tccaattgtt gttcctggta
     1861 agttctattg tatccatact tccctttacc attggcggcc tgggcgcccg ggaagtggtg
     1921 tttttgtggg gatcgcagca gttcagcctc gtgcaaagtg aggccatttt catcagcctg
     1981 ctgttttacc tgataacgtt ggtgtcttct ttggtaggaa tctattgggt gtacaagtcc
     2041 cctttcgatg acaacgaaaa atagaacaat gattcagtgc attgttttca ctcaaactcc
     2101 agtgagttta cattcatttc ccacgcattc cgaaccctcg agaatgtatg cctgacaata
     2161 tgcctttctt tcgctttggc atgtgtcagt ttgatcaaag gctggttgtt ttccactttg
     2221 atcatgtcat tcgatttccc agttttcgtg aaagtggggg gatttcctga atggtgtgtt
     2281 tgctttctca tacaataaaa aattacggcc aatggcttct ttaagataac caatgaaggc
     2341 cgtaattgtt actctttttg cgaataaatt tttgcccgac gggcatgccg caattccttt
     2401 tttcctaagt ggttgactta taaatgttat agctgttggc ctgggccgtt ggtgttacaa
     2461 caaggtcgtt gatgcacaca tgcgggggca gcgttgcggt atacaaaaca ataccggcca
     2521 catcttcggc cgatagcggc tgatagcctt tgtagatggc cgccgccttg ctctcatcgc
     2581 ctttgaaccg taccagcgag aattcggtct ctgctgcgcc gggagcgatg tgcgttacct
     2641 tgatattgaa gggcagcagg tcgatgcgca aagccttcga caggccttcc accgcgaatt
     2701 tggcggcgtt gtagccattg ccaaactcat agggttcttt gccggcaatg gagccgatgt
     2761 tgatgatgtg tccctgcctg cgctccgtca tcatgggcag cactgccttg gtgatgtaca
     2821 tgagccccat gacgttggta tccatcatga tctcccaatc atcgaggctg gcatcggtca
     2881 ccctgtcgcg gccccaggcg ccgccggcgt tgttgatgag aatgtcgatg ggctgccagt
     2941 cggcgggcag gctgctgatg gcttcaaaac aggcatcgcg gtcgcggatg tcgaagcaaa
     3001 gcgagaggca gcgggcctgg ccgggacttt cgatcgatgc ctgtaatgca tcgagtcttt
     3061 ctttcctgcg gccggtaata ataatatcaa aacctgcccg ggcaaaggct tccgccatgg
     3121 ctttcccaaa tcccgaggtg gcacctgtga tcagcacaat ttttttcatg gctgcaattt
     3181 gcagcattgc cattacaatt cctgcgctgg cggtggtcgt cagtcaattt tgttcttgat
     3241 ggctattaac tcctgtttga tttctttcag ggtttcgtat accagttcct gcgccagcat
     3301 ttttacaaac tccacatagg ccacaggatt ttcggaagca tcgaggccgg tccagctttt
     3361 gaattcgtct ttgctgttgg caaataagtt tgagttcatg gcaattgttt tttggtgtgc
     3421 aatgccaaaa gatacaacag ccgcttttga atgtaaagcg ccgcctgccg cctttaccgg
     3481 atgaggatga aacttccttt ggccgaaacg ttgttgccct caaaatccac cgcctggcat
     3541 tggtacacaa aagtggcact ggcctgcagg atgccattga tccggccatc ccatcccttg
     3601 cctatttgtt tggtttcaaa taccagctgg ccgtagcggt tgtatatgcg gaaaaagacc
     3661 agttcacgca tgcccggcag cgatggacgc agcacatcat tcaagccatc attgttgggc
     3721 gtaaagccat tgggcacaaa aatggagggg ctggtgctga atactttcac gagcacctgg
     3781 tcggtggcgc tgcagccctc gggggtgctg gcagtaatga tgtaccgaat ggtgtcgatg
     3841 ccagccggca aaatgccttg ccggaacacc gcctgcgggt tggcaatatt gggattgctg
     3901 agcgccgtgg ccgggctcca ccttatttgt gatgcattgg tggcagcatt gaattgcagg
     3961 gtttgattgt acac
//
LOCUS       DATIQF010000730         2075 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_27003, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000730 DATIQF010000000
VERSION     DATIQF010000730.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27003"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(117..761)
                     /locus_tag="VLL95_12530"
     CDS             complement(117..761)
                     /locus_tag="VLL95_12530"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HSR39733.1"
                     /translation="MNQSPLHPTSTSHSKAMIDVNLLLALGATFRDVAKGDFIFQEGA
                     HCRFYHQLVSGSVRWVNTDDKGKEYIQAFIEPGESFGEFPLFDDGPYAASAIANEDAV
                     IIRLKKDTFLQLIRDEPSIHLRFDKKLVERLRFKFLLLRMIANHTPEERVHNLLDFLK
                     GNQKHICPNCHQIKLTRQQIADLCGLRVETVIRVVRRMHDEGQLLVENRKIYYS"
     gene            complement(1161..2060)
                     /gene="groEL"
                     /locus_tag="VLL95_12535"
                     /pseudo
     CDS             complement(1161..2060)
                     /gene="groEL"
                     /locus_tag="VLL95_12535"
                     /inference="COORDINATES: protein motif:HMM:NF012346.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
BASE COUNT          485 a          519 c          517 g          554 t
ORIGIN      
        1 ggccctccat tttttcagca accatcaatc ccgtgaatac cagcattgaa ttggacacgg
       61 tgagcaaaaa ctgacagctg aaagggtgta attacatctg ggaatgcagc tgcctttcag
      121 gagtagtaga tcttccggtt ctccaccagc agttgtcctt cgtcgtgcat gcggcgtact
      181 acgcgtatta cagtctccac ccgcagaccg cacaggtcgg caatttgctg gcgggtcagt
      241 tttatctggt ggcagttggg gcaaatgtgt ttttgattgc ccttcagaaa gtcgagaagg
      301 ttgtgaactc tttcctcggg tgtatggttg gctatcatgc ggagcaacag gaatttaaac
      361 cgaagcctct ccaccaactt tttgtcgaaa cgcaggtgaa tgctgggttc atccctgatc
      421 aactgaagga atgtgtcttt cttcagccgg atgatgacag cgtcttcatt ggcaatggca
      481 gaagcagcgt aagggccatc gtcaaaaagc gggaattcgc caaagctttc gccgggttca
      541 ataaaggctt gtatgtattc cttgcctttg tcatcggtat ttacccaacg aacactcccg
      601 gaaaccaact ggtggtaaaa acggcaatga gccccttcct ggaaaatgaa atcacctttt
      661 gccacatccc tgaaagtggc tcccaatgcc agcaacaggt tgacatcaat cattgccttg
      721 ctgtggctgg tactggtggg atgtagcggt gattggttca taggcagaac tacgttttaa
      781 agccattcaa agctattgat ggcttgtaac cgtgttcaaa ttaatcaagt aatgttcaga
      841 taaagccttt gttgaacaaa atgatgagaa cttattacaa aaagaggcgg tctgttggcc
      901 cgctatagtt ttcaataaat gacaaatggg tcgtcccatc ctgatggatt gcgttttcga
      961 aataaacgct gccatgcatt tttcaaaagc ttcgttacaa aaaggcgatc gatgaatgtc
     1021 ttcataacat ttgcattttt gaaagttgtt tttgaaaaaa atgaccactc aaatggtgta
     1081 ggaaagaaaa ccccgcctgc ttgcacaaac ggggttttgt atttgcagtc aaccgtgaac
     1141 agtcaaccgt caacttaatt ttagtagtcc atgccaccca tgccaggatg accgccggca
     1201 ggagcggcag ccttaggctc gggcttgtcg gctaccacgg cttcagtagt caggagcata
     1261 ccggcaattg aagcggcatt ttccagggct acgcggctta ctttggtagg atcaattaca
     1321 ccagccttga acaggttttc gtaattctcc gtgcgggcat tgaaaccaaa gtcgcctttg
     1381 ccttcgcgga tcttctgcac cacgatagaa ccgtcgatgc cagcgttggc agtgagggtg
     1441 cggatgggct cttccaaagc acggcgtaca atctgcatac cggtttgctc atcagcgatc
     1501 tggcctttta ctttggcatc caggctttcg agtgcacgga tgtaagccac accgccacca
     1561 ggcacaatgc cttattctac agcagcacgg gtagcatgca gggcatcatc tacgcgatct
     1621 ttcttttcct tcatttccac ttcggtagcg gcacctacgt acagtacagc cacaccgccg
     1681 ctcagcttgg ccaggcgctc ctggagcttc tcacggtcgt agtctgaagt tgttgattca
     1741 atctgggcct tgatctggtt cacacgggca gtaatgtcct tcttgtcgcc cttgccacct
     1801 acgatggtgg tattgtcttt gtcgatggtt acgctgctgg cctggccgag gtagctgagg
     1861 tcagcattct ccagcttgta gccttgctct tcgctgatca caataccctt ggtgaggata
     1921 gcgatatcct gcagcatttc cttgcggcgg tcgccaaagc cgggcgcttt tacagcagcc
     1981 actttcaggg tgccacgcag tttgtttacc acgagggtag ccagtgcttc gccttcgagg
     2041 tcttcgctga tgatgagcag cggacgtcca ccctg
//
LOCUS       DATIQF010000731         2140 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_239849,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000731 DATIQF010000000
VERSION     DATIQF010000731.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239849"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(35..718)
                     /locus_tag="VLL95_12540"
     CDS             complement(35..718)
                     /locus_tag="VLL95_12540"
                     /inference="COORDINATES: protein motif:HMM:NF018749.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1349 domain-containing protein"
                     /protein_id="HSR39734.1"
                     /translation="MMRFNRFIVIRSLCLAAMICPVISMAQSTDSIRMKGLPYGMFWE
                     NKPKAYRISKDSLIIDSGPKTDMFRDPNVTYNTDNAPKLMFRADEHFVLTANIHHAFA
                     SKWDGGALVIKTDSLNWIKFCFEKDYTGARRIVSVATNNISDDANHVASSKNAAWFKV
                     AKADNVITLYVSDDGKKWLLVRHLQFNSSQKPLIGFLAQSPTGNNCRVTFSKIRYMAV
                     KIKDPYAGE"
     gene            817..1539
                     /locus_tag="VLL95_12545"
     CDS             817..1539
                     /locus_tag="VLL95_12545"
                     /inference="COORDINATES: protein motif:HMM:NF018446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005267 - potassium channel activity
                     [Evidence IEA];
                     GO_function: GO:0015252 - proton channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HSR39735.1"
                     /translation="MLHAFVRPQHQQHFRIRGKEILRIEALSDAVFAFAISLLVVALE
                     VPQNFHELKVILRGALKFFATVSLLFLFWYQQYTFFRHYALNDLPTILLNMAYLALIL
                     FYLYPLKFLFSLLLGSWLGVDLFPKATESGVAVLMPEEFPDLVLLFSIGYSLIWLLLF
                     LMHHRAVRQAVALQLSPYELLYTKSERRGAYWNVGVGLAAILLVLLGFAYVSGICYLC
                     IPLLLWLNSRRLRKDLRRMNIV"
     gene            1619..>2140
                     /locus_tag="VLL95_12550"
     CDS             1619..>2140
                     /locus_tag="VLL95_12550"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HSR39736.1"
                     /translation="MMKRFFAFVPMLAGLLMTVGCANKNGHSQIVNPADSTASVETNK
                     PNTDYMPAFAGQTRVRAVKTVTAYEVVPLADGIGRPWAVVPLPDGRLLLTEKSGYMEI
                     RDAQGKLLTKVTGFPAVDDRGQGGLLDVVPDPEFPQNKIIYWAYSEKYSSGNLTAIAK
                     GKLSADEKSIENPT"
BASE COUNT          495 a          489 c          555 g          601 t
ORIGIN      
        1 atgcttaccg catgcggttg ctgaatgttt gatcttattc gcctgcgtaa gggtctttga
       61 tttttactgc catgtagcgg atcttgctaa aggtgacacg gcagttattg cctgtgggcg
      121 attgtgccag gaaaccaatg agcggttttt gactgctgtt gaactgcagg tgacgaacga
      181 gtaaccattt ctttccatca tcagatacgt aaagcgtgat gacattgtcg gctttggcca
      241 ctttgaacca ggcagcattc ttactagacg caacgtggtt ggcatcgtcc gaaatattgt
      301 tggttgccac tgacacgatg cggcgggcac cggtataatc tttttcaaag cagaacttga
      361 tccagttgag gctgtccgtt ttgatcacca gggcgccgcc atcccacttg ctggcaaatg
      421 catggtgaat gttggcagtc agcacgaaat gttcatcagc cctgaacatc agtttgggtg
      481 cattgtccgt attgtaggtt acgttggggt ctcgaaacat atctgtcttc ggaccactgt
      541 cgatgatgag gctgtcttta ctgattcggt atgctttcgg tttattttcc caaaacatgc
      601 catagggcaa gcctttcata cggatcgaat cggtgctttg cgccatggaa atgaccgggc
      661 aaatcatggc agcgaggcat aaggagcgga tgacaataaa tcggttgaat cgcatcatga
      721 ggggatttac tatttcaaat tagcaatcct ttcaatttca tcctaatcca tgtcatggtt
      781 taggaaagtg ccgcattcta cattggcaaa aaaaagatgt tgcatgcatt cgttaggcca
      841 cagcaccaac aacacttcag gattcgtggc aaagagatac tacggataga ggcactgagc
      901 gatgccgttt ttgcttttgc catttcgttg ctggtggtgg cattggaagt accgcagaat
      961 ttccatgaat tgaaagtgat tctgcgaggc gctctgaaat tttttgccac cgtgtctttg
     1021 cttttcctgt tctggtatca gcagtataca ttctttcgcc attatgcgct caacgacctg
     1081 cccaccattc tgctgaacat ggcctacctg gcgctcattc ttttttacct gtacccgctc
     1141 aagttcttgt tctcgctgtt gctgggttcg tggctgggcg tggatttgtt tcccaaagcc
     1201 actgagtcgg gtgtggccgt gctgatgcct gaagaatttc cggacctggt attgctcttc
     1261 agcattgggt actcgcttat ctggctgctg cttttcctga tgcatcatcg tgcggtaagg
     1321 caggcagttg ccttacaatt gtcgccgtac gaattgcttt atacaaaatc agaacgccgt
     1381 ggcgcttact ggaacgtagg agtggggctg gctgccatcc tgttggtatt attgggcttc
     1441 gcctatgttt ccggcatttg ttatctctgc attcccttgt tgttgtggct caacagccgc
     1501 aggctccgca aggatttgcg acggatgaat attgtttgat ttcccggtca cctgtttctc
     1561 ctcatcgaaa cattattgct gcagaaagcg gtacatttag ccaatacctg cctgcaatat
     1621 gatgaagaga tttttcgctt ttgtaccgat gttggctgga ctgttgatga cagtgggatg
     1681 tgccaataaa aatggtcatt cgcaaatagt caacccagcg gatagcacag cttctgtaga
     1741 aaccaacaag cccaacaccg attacatgcc tgcctttgca ggccaaacaa gggtaagagc
     1801 ggtaaaaacc gtcactgcct acgaagtagt gccgctggcc gacggaattg gcaggccatg
     1861 ggcggtggtg ccactgcccg atggcaggtt gttgctgacg gagaaatccg gttacatgga
     1921 gatcagggat gcgcagggaa aactgttaac gaaagtgaca ggctttcccg cagtggatga
     1981 ccgtgggcaa ggcggcctgc tggatgtggt acccgatcct gaatttccac agaacaagat
     2041 catttattgg gcttacagcg aaaagtatag cagtggcaac ctgacggcta ttgccaaggg
     2101 caaattatcg gctgatgaaa agagcattga aaacccgacg
//
LOCUS       DATIQF010000732         6045 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_300550,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000732 DATIQF010000000
VERSION     DATIQF010000732.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6045
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300550"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..649)
                     /locus_tag="VLL95_12555"
     CDS             complement(<1..649)
                     /locus_tag="VLL95_12555"
                     /inference="COORDINATES: protein motif:HMM:NF015866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_process: GO:0055070 - copper ion homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HSR39737.1"
                     /translation="MTEKITPSLEVCAFTIQTCLIAERVGARRVELCDNPIEGGTTPS
                     YGVIRQVRQRVGIELYPIIRPRALNYFYDEDEWNIILDDVKMCRELGCDGISIGVQKQ
                     NGEIDADKMKRLVEVAYPMGVTCNRVFDAVPNPFEVLEILIDAGCERVLTSGQATAAP
                     DGAVMLRQLVEQAAGRISIMPGAGVKSANLAQLVEATGAWEYHTSAHKAVDNPVSF"
     gene            complement(691..2004)
                     /gene="der"
                     /locus_tag="VLL95_12560"
     CDS             complement(691..2004)
                     /gene="der"
                     /locus_tag="VLL95_12560"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HSR39738.1"
                     /translation="MGYTVAIVGRPNVGKSTFFNRLLESRKAIVDDVSGVTRDRQYGV
                     ADWNGKSFNVIDTGGFVPDSEDVFEREIARQVVIALEEANALIFMTDAATGVTNLDEA
                     MADVLRRSTKPVYLAVNKVDNYERQLQANEFYSLGFDNVFFISSMSGSGTGELLDAVA
                     TQITEDDSEEVVQQDALPKFAIIGQPNVGKSSLLNALVGQERTIVSDIAGTTRDTIHT
                     HYNLFQKEFILIDTAGIRRKTKVHEDLEFYSVIRAIKAIYEADVCLLLLDAEKGITAQ
                     DLKIYSLAASKGKGIVVLVNKWDVVEKETNTARDYEKELKEKLAPFNDVPILFVSAKE
                     KTRIFKAIEKGLEVFESKKRRIPTAKLNDAMLQAVAAYKPPMTRGNLIRIKYVTQLPT
                     AVPSFAFFSNHPDEIKTPYKNYLENQLRKQFDFCGVPIRIFFRKS"
     gene            complement(2017..2685)
                     /locus_tag="VLL95_12565"
     CDS             complement(2017..2685)
                     /locus_tag="VLL95_12565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39739.1"
                     /translation="MGTVMNAAGQPVSDGLMVYGAESLKKNVTYADVKGSPFLNDSFR
                     ISVVYDQNDKTIARVKSKINFYNFNLHFINQNGQELVVGPDLVKKIQYIDPFDEKKVL
                     QEFSSDVDALNQKFEKPVFVQVMNHGDARLLKYMNRYVGTYDSLMGQFKRYMFITRED
                     YYMQRQETVEPLRKLNRERVLAFTRYERELSEFATQNKLDFRKENDVVAILNHLNMIT
                     KKLK"
     gene            complement(2845..3720)
                     /gene="era"
                     /locus_tag="VLL95_12570"
     CDS             complement(2845..3720)
                     /gene="era"
                     /locus_tag="VLL95_12570"
                     /inference="COORDINATES: protein motif:HMM:NF000908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HSR39740.1"
                     /translation="MVFKSGFVSILGKPNAGKSTLLNALVGEKMAIVSKKVQTTRHRI
                     KAFLNSDQYQVIFSDTPGIIDPQYKLHERMMQQVKNAIEDADVALLIYDVSERNESEA
                     AAFFDGLKLRVPAILVLNKVDQASQSEVQKAIEFFSAGNYRKVIAISALKQLGLQELL
                     DSILELLPEGEPYFSTEDLSDLPTKFFVSELIREKIFELYHQEIPYHTAVVIQEFSEK
                     ATLTKIRADIVVQREMQKVIMIGDKGQMIKRLGTESRKEIEQFIGGKVFLELFVKVRP
                     KWRDQDIFLKEYGYE"
     gene            complement(3765..3839)
                     /locus_tag="VLL95_12575"
     tRNA            complement(3765..3839)
                     /locus_tag="VLL95_12575"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3805..3807),aa:Met,seq:cat)
     gene            complement(3968..4612)
                     /locus_tag="VLL95_12580"
     CDS             complement(3968..4612)
                     /locus_tag="VLL95_12580"
                     /inference="COORDINATES: protein motif:HMM:NF022441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head GIN domain-containing protein"
                     /protein_id="HSR39741.1"
                     /translation="MKYLTWMLAVILTFGYFQGHTQTTITDPNVVVRQTGPFNSIVVS
                     SAIDLIITQSKNVAVAVSASESKYVENITTEVRNNTLYIGYKGSNAGWGPKYMRAYVS
                     VPDLYKIGASGACNVKIDGSINGTDLEISLSGSSDFKGSVSVNNLKLVASGSSDIVIS
                     GKTTNLRVDVSGSSDLKGFDLSADYCDVSASGASDVNITVNKELKVSASGASDV"
     regulatory      4759..4863
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            4916..>6045
                     /locus_tag="VLL95_12585"
     CDS             4916..>6045
                     /locus_tag="VLL95_12585"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR39742.1"
                     /translation="MKRICSLVLLLAFMQLAQAQNVAELQLQVFSRDGSLLDGASAKL
                     SADKRTVNALSDASGRVIFKNAKYPARVTVSYAGFETFDTTLLNWDNKLVTVTLTPSR
                     SALQPVEVKGIRAGRNAPFAKTDISQATIEKNNTGRDIPFLLNQTPNVVVNSDAGNGV
                     GYTGIKIRGSDASRINMTINGIPYNDAESQGLFFVNLPDFLSSVSSIQVQRGVGTSSN
                     GAGAFGATMNFSTHSYNPEAYAELNNTVGSFETFKHTLKAGTGLLGKHFTVDARLSNI
                     RSEGFVDRAFSRLSSGQLTVGYWGDKTSVRFNTILGKERTYQAWYGITEDDKVNNRRV
                     NYAGTERPGEPYDNETDNYWQNHYQLLLNHEFSNKWVFNTAL"
BASE COUNT         1592 a         1474 c         1294 g         1685 t
ORIGIN      
        1 aaaaagaaac aggattgtca actgctttgt gggctgaagt atggtattcc catgcaccgg
       61 ttgcttcaac cagttgcgcc aggttagcag attttacacc ggcaccaggc attatgctga
      121 tgcgacctgc agcctgttct accagttggc gtaacatgac agcgccatcc ggcgctgctg
      181 tagcctggcc cgatgtgagc actctttcac acccggcgtc aattaagatt tccagcactt
      241 caaacggatt cggcacggca tcgaaaacac ggttgcaggt aacccccatt ggataggcta
      301 cctcaacaag ccgtttcatt ttgtcagcat caatttctcc attctgcttt tgaacgccaa
      361 tggaaatgcc atcacaacct aactccctgc acattttcac atcatccaat atgatgttcc
      421 actcatcttc atcgtaaaaa taattgagtg cccggggcct gatgatcggg tacaactcaa
      481 tgcccaccct ttggcgcacc tgcctgatca caccatagga tggagtagtg cccccttcta
      541 tgggattatc acacagttcc acacgcctgg cgcccactct ttctgctatc aaacaagtct
      601 ggatagtgaa agcacacact tccaatgatg gcgttatttt ctccgtcatg gttttaaagc
      661 aatgatgatt ctataaacaa agccatgcca tcagcttttc cggaagaata tcctgatggg
      721 cacaccgcaa aagtcgaatt gcttgcgcaa ctgattttcc aggtagtttt tgtaaggtgt
      781 ttttatttca tcgggatggt tgctgaaaaa agcaaacgac gggaccgctg taggcaactg
      841 cgttacatac tttatgcgga tcaggttgcc tcgcgtcatt ggcggcttgt atgctgccac
      901 cgcctgcaac atcgcatcgt tgagtttggc agttggaatt ctacgcttct tgctttcaaa
      961 aacttccagc cctttctcaa tggctttgaa aatacgggtc ttctctttgg cagaaacaaa
     1021 cagaatgggc acatcgttga atggcgccag tttctctttc agttcttttt cataatcccg
     1081 ggcggtattg gtctccttct ctaccacgtc ccatttattt accagcacca caatgccttt
     1141 gccttttgaa gcggccaggc tgtagatctt cagatcttgt gcggtaattc ctttttcggc
     1201 atccagcagc agcaggcaaa catctgcttc gtaaattgct ttaatggccc tgatgacaga
     1261 atagaattcg aggtcttcgt gcaccttggt tttgcggcga ataccagcgg tatcgatgag
     1321 aatgaattcc ttctgaaaca ggttatagtg ggtatggatg gtgtccctgg tagtgccggc
     1381 tatatcgctg acaatggtac gctcctgccc taccagtgca ttcaacaggc tgctcttgcc
     1441 tacgttgggc tggccgatga tggcaaactt gggcaatgca tcctgttgta ccacttcctc
     1501 ggaatcatct tcagtgatct gcgtagccac agcatccagc aattcgccgg taccactgcc
     1561 actcatgctc gaaatgaaaa aaacattgtc aaaaccaaga gagtaaaatt cattggcctg
     1621 caactgtcgc tcatagttgt caaccttgtt taccgccagg taaacaggct ttgttgaacg
     1681 acgcaacaca tcggccatag cctcatcaag attagtgacc ccagtggctg catcggtcat
     1741 aaaaatgagc gcattggctt cttccagcgc gatgacaacc tgccttgcta tctctctctc
     1801 aaacacatct tcgctgtctg gcacaaatcc gccagtatcg atcacgttaa atgattttcc
     1861 attccagtcg gccacgccat attgcctgtc gcgggttacc ccactaacat catcaacaat
     1921 cgcctttctt gattcaagaa gtcgattgaa aaaagtgctc ttgcctacat taggtcttcc
     1981 tacaattgct accgtatatc ccataatcag ctattctcac ttgagttttt tagttatcat
     2041 attcaggtgg ttcaaaatag caaccacatc gttttctttc cggaaatcaa gtttgttctg
     2101 tgtggcaaac tcagataatt ctctttcata cctggtgaag gccagtaccc tttccctgtt
     2161 cagtttacgc aagggttcaa cagtctcttg ccgctgcatg taataatctt cccgcgtaat
     2221 aaacatataa cgtttgaatt ggcccatcaa agaatcatag gtgcccacat accgattcat
     2281 atacttaagc aatcgtgcat cgccgtggtt catcacttga acgaaaaccg gcttttcaaa
     2341 tttctggtta agtgcatcta catcgctgct gaattcctgc agcacttttt tctcatcaaa
     2401 aggatcgatg tactgaattt tctttaccag gtcggggccc actaccaact cctgtccatt
     2461 ctgattaatg aagtgcaaat tgaaattgta aaaattgatc ttgctcttta ccctcgcaat
     2521 cgtcttgtca ttctgatcgt acacaacaga aatgcggaaa ctgtcgttga ggaaaggact
     2581 tccttttaca tctgcatagg ttacattctt tttcaatgac tctgcaccat acaccatcag
     2641 gccatcgctc actggctggc cggctgcatt cattacagtt cccatctcaa tggttaccgg
     2701 cggctggcta tatgaaaatt tcgaaaccag gcagcccata aagaacactg tataaaaaaa
     2761 gagtcttgcc atttgtacct ccgtagaaaa ggtgactttt attcatttgt aagataaaaa
     2821 atatggcgca cagccgtaac tgtgttattc atagccgtac tccttcagga aaatatcctg
     2881 atccctccat ttggggcgca ctttcacaaa caattccagg aatactttcc ctccgatgaa
     2941 ttgctctatt tccttccggc tttcagttcc aaggcgtttg atcatttgac ccttatcgcc
     3001 aatcattatt accttttgca tctcacgctg caccacaata tcagccctga tcttggtaag
     3061 ggtagctttc tctgaaaact cctggataac cacagcggtg tgataaggaa tctcctggtg
     3121 atacaattca aatatttttt cccggatcaa ctcactcaca aaaaacttcg taggcagatc
     3181 gctgagatcc tcggtactga aataaggctc accttccggc agtaattcca gaatggaatc
     3241 gagcaactcc tgcaatccca gttgcttcaa tgcagagatg gcaattactt ttctataatt
     3301 cccggcactg aaaaactcaa tggccttttg cacttcgctt tggcttgcct ggtccacttt
     3361 attcaaaacc aatatggcag gaaccctcag tttcaacccg tcgaaaaatg cggctgcttc
     3421 actttcattc ctctcagaaa catcgtaaat caacaaggca acgtctgcat cctcaatggc
     3481 atttttcact tgctgcatca tcctttcatg cagtttgtac tgagggtcga tgataccagg
     3541 ggtatcagaa aaaatgacct ggtattgatc actgttcaaa aaagccttga tgcggtgacg
     3601 ggtggtttgt actttcttgc tgacaatagc cattttctcc cccaccaatg cgttgaggag
     3661 ggtgcttttg ccagcgttgg gcttgcctaa aatgcttaca aagccagatt taaacaccat
     3721 acaatacaga acaaaaaaag gcttcatttg aagccttcct tttttggttg cgaagggagg
     3781 gatcgaacct ccgaccttcg ggttatgagc ccgacgagct accgctgctc tacttcgcgc
     3841 tgtttttggg agtgcgaaga taggggggcg agagtttcac tccaaaagat ttctgatttt
     3901 aacttctctt cttaacatca gaagcgccag aagatgaaat ctctttgatt actccattgc
     3961 ctttgtatta aacatcgctg gcaccggatg cacttacttt taattctttg ttgacggtaa
     4021 tgttaacatc gctggcaccc gaagcagata cgtcacaata gtcggcgctg agatcaaaac
     4081 ccttaaggtc gctgctgccg cttacgtcca ctctcaggtt ggttgttttt ccggaaatca
     4141 caatatcgct gctgcctgat gccaccaact tgagattatt tacagaaaca cttcctttga
     4201 aatcgctgga accactaagg gaaatttcga gatcggtacc attgatgctg ccatctattt
     4261 tcacattgca ggcgccagat gcaccgattt tatacagatc cggcactgaa acataggccc
     4321 gcatgtattt gggtccccaa ccggcattgc tgcctttgta cccgatgtaa agtgtgttat
     4381 ttcgcacctc agtagtgata ttttcaacat acttgctttc gctggcgctt actgctaccg
     4441 ctacgttttt gctttgggta atgatcaggt cgatagcgct gctgaccaca atactgttaa
     4501 atggaccggt ttgcctcaca acaacattag ggtcggtgat ggtggtttgc gtgtgtccct
     4561 ggaagtatcc gaaagtcagg attactgcca gcatccatgt caggtatttc ataatgcttc
     4621 aggtgttttt ttaaaagaga aaatggctaa taggttgaat aatttgagtt gatttaccgt
     4681 aagacgcatg attgtcttat ttgttacagg caacacaaag ttgttgttgg atcaaatcaa
     4741 accctaattt cgcccctgta acagtgcccg gggtgtttca ggaagattga cctgagactg
     4801 agaaatcacc cgttgaacct gatcaggata atacctgcga agggaaggct gccttccaat
     4861 ggccgttttt tggcgatgcg tctgagcatt ccgggcaaat tcaaaaagtg atggtatgaa
     4921 aagaatttgt tctttagtgt tgctcctggc attcatgcaa ttagcgcaag cacaaaatgt
     4981 tgctgaactt caattacaag tattttccag ggatgggtca ctgctggatg gcgcctctgc
     5041 aaaattgtcg gctgacaagc gaacggtgaa tgccttatcc gacgcaagcg gaagagtgat
     5101 tttcaaaaat gcaaaatatc cggccagggt taccgtttct tacgcgggat ttgaaacatt
     5161 cgataccacc ctactaaact gggacaataa actggtaact gtaacactta cgccatccag
     5221 gtcggctttg cagccagtgg aagtgaaagg aatcagggcc ggcaggaatg cgccatttgc
     5281 caaaacagat atctcgcagg caaccatcga aaaaaacaac acaggcaggg atattccctt
     5341 tttgctgaac caaaccccca atgtggtagt gaacagcgat gcagggaatg gtgtaggcta
     5401 tacaggcatc aaaatcagag gttcagatgc gtcgaggatc aatatgacca ttaacggcat
     5461 tccttacaat gatgccgaaa gccagggttt attcttcgtg aatttgccag acttcttatc
     5521 atcggttagc agtattcagg tacaacgtgg cgtgggcacc agcagcaatg gcgcaggcgc
     5581 ctttggtgcc accatgaatt tttcgacaca cagctacaac ccggaagcat atgctgaatt
     5641 gaacaatact gtgggcagct ttgagacatt caaacacacg ctgaaagctg gaacagggct
     5701 cctgggtaag cattttacag ttgatgcccg attgtcgaat atcaggagtg aaggatttgt
     5761 agacagggct tttagcaggt taagcagcgg tcagctgacc gttggatact ggggcgacaa
     5821 aacgtcggtg cgattcaata ccattcttgg taaagaaaga acctaccagg cctggtacgg
     5881 aattacagaa gatgacaaag taaacaaccg cagggtgaac tatgcaggca ccgaacgccc
     5941 gggtgaaccc tacgacaacg aaactgataa ctattggcag aatcactacc aacttttgct
     6001 caatcatgaa ttcagcaata agtgggtatt taatacggca ctatt
//
LOCUS       DATIQF010000733         6098 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_194038,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000733 DATIQF010000000
VERSION     DATIQF010000733.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6098
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194038"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1239..3458
                     /locus_tag="VLL95_12590"
     CDS             1239..3458
                     /locus_tag="VLL95_12590"
                     /inference="COORDINATES: protein motif:HMM:NF039534.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39743.1"
                     /translation="MNREIFTRELSYTFSRIRNDLKSTSLKSLFALFAFFLLFAGKSL
                     QAQIVIDGKPGDWANFRTNTLYATNAYAKDANNTNDNQFTQGSKDGDAISAWRWSNGQ
                     TNNKGDISNAAAILIGTNLYFSGDRAVNNGDAAIGFWFFKNEIAMTGTTSGGFTGEHA
                     NGDLLIVSHFTQGGGQADIYVYVWNGSGLTGPTTYSTAKVNDAAENVPAGFTYATAQY
                     PIGDFFEGMVDLTTLKVSPCFANFLLETRNSQSITASLQDLAFGSFTQTIPPPATTGA
                     QRCGDGEVTLQASGCTGGTLNWYTASIGGTLVNTGTSYTVNITQTTTYYVSCTSADGC
                     ISRRTAVTATKNPIPNVVAAASPAGPVSIASAPPHYNLSTTVDGVLNNSNFNYSWVQD
                     PPEAGNTGQLSSNTVANPSFTAYIAGEFKWTVTATDKTTGCYNTSYVIRQISAAAGCP
                     TVPRSPVCQGTTHTYTASVAPAATETWKWTVNNGATINGADNAQSVSVTAGSQSFTLT
                     LTKTYANSNLAPTVCTYPITVNPPDPAPATTYIPPTCTESTFSVQVNNPAVVSTYTLK
                     QLDGNTVNIGPYASGNLIFTGLHIGQGYSVMSTTSQGCISNPDECGNFAVPVTSKTSE
                     GLSPTIASKIEPTKVAPSVKISQPETVQQNPVVLAAPNPYNSYIRFTVTSPVAGKGSL
                     ELFNFYGQKMATVYQGYFEKGRTQNFEYKVPSTQVVNMIYLLRIGDQKVTGKLLGNR"
     gene            complement(3586..4719)
                     /gene="hppD"
                     /locus_tag="VLL95_12595"
     CDS             complement(3586..4719)
                     /gene="hppD"
                     /locus_tag="VLL95_12595"
                     /EC_number="1.13.11.27"
                     /inference="COORDINATES: protein motif:HMM:TIGR01263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003868 - 4-hydroxyphenylpyruvate
                     dioxygenase activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HSR39744.1"
                     /translation="METAVQSRLQAAAVNDFLPLQGTDYVEFYVGNAKQAAHYYMSAF
                     GFQALAYAGPETGVKDKVSYVVRQHKLTFMLTTPLRGGNPIADHVYKHGDGVKTLALR
                     VDDAKDAWHQTTSRGAVSCLEPITLTDAGGEVVLSGIHTYGDTVHVFVERKNYKGVFM
                     PGFRAWSNPYFAPAETGLLYVDHCVGNVGWNQMNKWVSFYEDVMGFRNILSFDDKDIS
                     TEYSALMSKVMSNGNGYVKFPINEPAEGKKKSQVEEYLEFYEGEGCQHVALATNNIVA
                     TVTELRNRGVEFLQVPTTYYDDLLDRVGHIDEDLEPLKELGILVDRDDEGYLLQLFSK
                     PVKDRPTLFFEIIQRKGAKSFGKGNFKALFEAIEREQEARGNL"
     gene            5050..5943
                     /locus_tag="VLL95_12600"
     CDS             5050..5943
                     /locus_tag="VLL95_12600"
                     /inference="COORDINATES: protein motif:HMM:NF024946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HSR39745.1"
                     /translation="MFLLITTSATSQDLDPRSYLRLPTRTTTMITGFSYSRGGVVTDP
                     TLPFTNVKADVLVGTAGVLQSFNFFGLSSSFLAVLPYSWAQASGDVGEQRSSVTRTGL
                     ADMRLRWSVLLRGGKAATVAELRNAPRKTILGFSINVIAPTGEFFPDKLVNLGTNRWS
                     FRPELAISQPIAKRWLLDAYAGVWLFTDNKTFYPGNAIRQQDPMGAFQFHLSYNIKPT
                     LWVAFNSTFYTGGQSTINGTVKDDRQSNVRLGFTAVVPTGKWSSLKLAVSKGAVIRIG
                     QDFTTFNLGWQRTWIGGMKKK"
BASE COUNT         1744 a         1526 c         1247 g         1581 t
ORIGIN      
        1 cccaaaactc aggtcagcac caatcaatcg tttcatcaaa ccagcctagt aaacaggacc
       61 aagactccaa tcttcaattg ttcaaacgcc aatgttgaac aaaaatttta gccagcaatg
      121 aaacaaaaat cataccagcc gcaaaagctt attacaaatc acccgggaat aacacttgca
      181 acaaacaaaa gtttacagta gtgttgaatt attccgacca atcacacttc ctaattcttt
      241 tgcaacaata gatcaaaagc acaaattgaa aatgaaaaaa ataattcatg aaacgatgct
      301 tcaaccttga tttaataatg tttcatccgg gattctgaca actatttata aaacaacaca
      361 ttattgcttt atcgaataaa cattgatgta atgacaacat ctgcgcctga tcatcaccga
      421 ttattttttc caccgggaca acatcaacca ttagcatcca aattgacgga atccatgcaa
      481 gaattccgat ttccaggaat tatgccaata ctgttactac acagaatgtt agaaaatgcg
      541 tccttccttc ctggttattt agattatcat aaatgcgttt cctgtgaata agaaataaaa
      601 ggcattctac acacagccag aaggatatac tacagttagt gacgctcact tcaaacatct
      661 gattgtttta taacagattg actggatgat acagtgaaca tatccatcaa cactcactga
      721 ttcggacatt ttcaatccac ctgcaaacac caaaattcaa acttcaatgt gacaatgatt
      781 tattcagaaa ctatgttgca ttaaaatacc ctacctactc atttttttac attaatatta
      841 tactctttct ctattttgtt tttaatttta taagagaagc tattggaccg ttttcctccc
      901 attaaattct gactcactgt cctttttcaa cacccctaaa cgcccacaga ggaaaaccaa
      961 tgcacacctt acttcaacaa tagcaatagc ctgaattggt tctggacaaa agaatagcaa
     1021 gaagagtata aatactcttg agttgttgtt cattcatgcc tgcaaaagtg tatgatttga
     1081 cacctgtaca tgaaactcaa tgattgcaac gctgccatca taaagttgcg caggcgggca
     1141 ccgctttgct ataaatattt gcgaagaatc aattccatcc gtttcagaat gaaatggagc
     1201 gtgaagcctt taccctaaaa catcaaaaac tcttttgtat gaatcgagaa atatttacac
     1261 gtgaactgtc atacacgttt tcacggatca gaaacgatct gaaatcgaca tcattaaaaa
     1321 gtctttttgc cttgttcgcc tttttcctgc tttttgccgg caaaagcctc caggcacaaa
     1381 tcgtaattga tggcaagccc ggcgattggg ccaatttcag aacgaatact ttgtatgcaa
     1441 caaatgccta tgcaaaagat gccaacaaca ccaatgacaa tcaatttacg caaggctcaa
     1501 aagatgggga tgcaatctcc gcctggcgct ggagcaatgg acaaaccaat aacaaaggcg
     1561 atatttccaa tgccgccgcc atcctgattg ggacgaactt gtatttcagt ggtgaccgcg
     1621 cagtgaataa cggtgacgca gccatcggct tctggttttt caaaaatgaa attgcaatga
     1681 ccggaactac cagtggtgga ttcacaggag aacatgccaa cggcgatttg ctgattgtca
     1741 gccactttac ccagggtggt ggacaagccg atatttatgt atatgtatgg aacggcagtg
     1801 gccttaccgg accaacaact tacagtacag caaaagtcaa tgatgccgcc gaaaatgttc
     1861 ccgctggttt cacctatgct actgctcaat acccgattgg agactttttt gaagggatgg
     1921 tagatttaac aacgctgaaa gtatcgcctt gctttgccaa cttcttactc gaaacccgca
     1981 actcacaatc tatcacagca tcattgcaag acctggcttt cggctccttc acacaaacca
     2041 taccgccacc tgctaccaca ggtgcgcagc gttgtggtga tggcgaagtt accctgcaag
     2101 cttctggctg caccggtggt acgctgaatt ggtacactgc ctccattggt ggcaccctgg
     2161 taaacacagg aacatcctat acagtcaaca ttactcaaac caccacttat tacgttagct
     2221 gcacttctgc agatggttgc atcagccgtc gaactgcagt aactgctacc aaaaacccca
     2281 ttccaaatgt ggtagccgct gcaagccctg caggcccggt ttcgattgcc tccgcacctc
     2341 cgcattataa cctgagcact acagtggatg gcgtattgaa caacagcaat ttcaactaca
     2401 gctgggtaca ggatcctccg gaagcaggaa atacaggaca actgagtagc aatactgttg
     2461 cgaatccatc atttaccgct tatatagctg gagaatttaa gtggacagtt actgccactg
     2521 ataaaaccac aggctgttat aatacaagct atgtaatcag gcaaataagt gcggccgccg
     2581 gatgtcctac agtaccacgt tctcctgtgt gccagggaac cacgcacact tatacagcaa
     2641 gtgtagcacc agcagccact gaaacatgga aatggactgt gaacaacgga gccaccatca
     2701 atggtgcaga caatgctcaa tccgtttcag tgacagccgg atcccagtcc tttacactga
     2761 cattgaccaa aacctatgcc aacagcaatc tggcgcctac cgtttgcact tacccaatca
     2821 ctgtgaatcc tccagacccc gcgccagcaa ccacctacat accgcctact tgtactgaat
     2881 caaccttcag tgttcaagtc aataatcctg cagtggtcag cacctataca ctcaagcaac
     2941 ttgatggaaa cacagtaaac ataggccctt atgcatcagg taacctgata ttcacaggtt
     3001 tgcacattgg tcaaggctat agtgttatgt ccactaccag ccagggttgt atctccaacc
     3061 ctgatgaatg cggcaacttt gcagtacctg ttacttcgaa gacttccgaa ggcttatcgc
     3121 caactatagc ttcgaaaata gaaccaacaa aagttgctcc atccgttaaa atctctcagc
     3181 ctgaaactgt tcagcaaaat ccggtggttc tggcagcacc caacccttac aatagttata
     3241 tcaggttcac tgtcacttct cctgttgccg gcaaaggatc gctagagttg ttcaactttt
     3301 atggccagaa aatggcgact gtctatcagg gctatttcga aaaaggacga acacagaatt
     3361 ttgaatacaa ggttccatcc actcaagtgg tgaatatgat ttatttactg cgcataggtg
     3421 accagaaagt aactggcaaa ctcttaggca atagatagac cgtattctat tggggttgat
     3481 agataagtaa aagggctgtc tcaaactgtt gagatagccc tttcatttat tttggtttag
     3541 aaacttcaat tgttacctag aaaccaaaat tgcagccctt atcatctaga gattccccct
     3601 tgcttcctgc tccctttcga tcgcttcaaa caacgcttta aagtttcctt tgccaaaact
     3661 cttggcgcct ttgcgttgaa tgatctcgaa aaacagcgtg gggcggtctt tcaccggctt
     3721 gctgaacaac tgcagcaaat agccctcatc atcacggtct acgaggatac ccagttcctt
     3781 gagcggctcc aggtcttcgt cgatatggcc gacacggtcc agcaaatcat catagtaggt
     3841 ggtgggtacc tgtagaaatt ccacgccacg attgcgcagt tcagtcactg ttgccacaat
     3901 gttgttggta gccaatgcca cgtgctggca accttctcct tcgtaaaatt ccaggtattc
     3961 ctccacctgg cttttctttt tgccttcggc aggttcgttg ataggaaact tgacatagcc
     4021 gttcccattg ctcatcactt tactcatgag ggctgagtat tcagtggaga tatccttgtc
     4081 gtcgaagctg aggatattcc gaaaacccat cacgtcttcg taaaacgaaa cccatttgtt
     4141 catctggttc catcccacat tgcccacaca gtggtctacg tacaacaaac cggtttccgc
     4201 aggggcaaag taaggattgc tccaggccct gaaacccggc ataaagacgc ctttgtaatt
     4261 tttgcgctct acaaaaacat ggacagtatc accataggtg tgaataccac tgaggaccac
     4321 ttcacctcct gcatctgtca gtgttattgg ttcaagacaa ctcactgctc cccggctggt
     4381 ggtttggtgc caggcatctt tggcatcgtc tacccgcaat gcaagggttt ttacaccatc
     4441 accgtgcttg taaacatgat cggctatggg gttgccgcca cgcaacggcg tggtgagcat
     4501 aaatgtgagt ttgtgctggc gcacaacgta gctcaccttg tctttcacac ctgtctccgg
     4561 gccggcataa gccaaggcct ggaaaccaaa ggcgctcatg taataatggg cggcctgctt
     4621 agcattgcct acataaaact caacataatc agttccctgc aggggaagaa aatcattaac
     4681 agcagcagcc tgtaaacggc tttgaacagc agtttccatg gtattgaaaa ttgaagtttt
     4741 gaatggagaa taaaaatcct gtgcttcaga acaaacaccc gcatagcgca ggcgctttgg
     4801 ggcacaagca ctgtaccctt gttattcacc gggccgcatc catggccagg gtgatcatga
     4861 gatagatata ttctctgttg gcaagcatat cgatgagcaa aagtaggcag ttcgccatta
     4921 actggcggcg cagtaagcag gtcgcccggt aaattgttac cttcatagcc tgaacattag
     4981 catttcctgt ttatggctga ccattcaagc aagagcactc atttatccaa acttcttcca
     5041 gtcggccttt tgtttctctt aattacgacc agcgcaacca gccaggacct ggacccccgc
     5101 tcctacctga ggcttccgac gcgaaccact accatgatca cagggttttc ttattccagg
     5161 ggtggcgtag ttaccgaccc caccttaccc tttaccaatg ttaaagcaga tgtattggtt
     5221 ggcaccgctg gcgtactgca atcattcaat ttctttggcc ttagttcgtc ttttttggca
     5281 gtattgccgt attcatgggc gcaggcttca ggagatgtgg gagagcaaag atccagcgtc
     5341 acccgcacag gacttgcaga tatgcgattg agatggtcag tgttattacg gggcggaaaa
     5401 gcagccacgg ttgccgaatt gagaaatgcg cccaggaaaa cgattttagg tttcagcata
     5461 aacgttattg cgcctacagg cgaatttttc cctgataagt tggtgaacct gggcaccaac
     5521 cgatggtcgt tccgtccgga actggcaatt tcccaaccca tagcaaagcg ctggctactg
     5581 gatgcgtatg caggtgtttg gctttttacc gacaacaaaa ctttttaccc cggcaatgcc
     5641 attcgccagc aagatcccat gggcgcattt caattccatt tgagctacaa catcaagccc
     5701 accttgtggg tagcgttcaa tagtacattt tatacaggag gccaatctac catcaacggt
     5761 acggtgaaag atgaccggca atcgaatgtc cgactgggct ttacagctgt ggtacccact
     5821 ggcaaatgga gttcgctgaa actggcggtc agcaaaggcg ctgtcatccg catcgggcag
     5881 gactttacca ctttcaacct gggctggcaa cgcacctgga ttggcggcat gaaaaagaaa
     5941 tagatgcctt gcgctcaagt cgtaccaaaa aaagccggct tcggctgaaa gaggtctcct
     6001 gctatatttg tcgacttaat ttttgaagcc cgttaacata gctcacccaa catgacaaca
     6061 caagaatggc tgcaaaccaa aattgctgaa gaagccgg
//
LOCUS       DATIQF010000734         1981 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_254833,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000734 DATIQF010000000
VERSION     DATIQF010000734.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1981
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254833"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(243..785)
                     /locus_tag="VLL95_12605"
     CDS             complement(243..785)
                     /locus_tag="VLL95_12605"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HSR39746.1"
                     /translation="MRWIKLALALFAAKFRHKISATETTRVDFRVWVTDIDVTVMNHA
                     AMMTVFEMGRIDYMVRTGFFRIATKNKCYFPNQAITVQFYRPLKMFQKEEVYTRMSFI
                     DEKLFYVEQKIMRHGKPIAACFANGMAKNGRETVPTADIIKALDYDPATLSFETHPLV
                     TTSQTQNDAMTERIINGWKV"
     gene            complement(893..>1981)
                     /locus_tag="VLL95_12610"
     CDS             complement(893..>1981)
                     /locus_tag="VLL95_12610"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HSR39747.1"
                     /translation="INTYLRSWKFPYDSMARNKKINSFQLLSHTAGLDIHGFPGYATT
                     DTLPTILQVLNGQRPANTKAVRSLFEPGLRFKYSGGGTTITQLLLADITQRNYADWME
                     EQVLRPLGMNNSSYQQPPSPAVHPQLATGYYGNGKPVTGRYHVYPEQAAAGLWTTPTD
                     LARYIIECQLALEGRSGKVLSPAMMKKRLTPYLDTSAALGVFINKRNGNAWFNHNGSN
                     EAFLCASYGSLQGGDGVVVMINGENFSVINELLNSVAQVYDWKGFYTPTFKKKIAPPK
                     DSLQQYVGNYKIMNDTITLSICGDQLCIQQNGQPPVGYKAIFTDTNTFTVAEVPNALF
                     SPFRNAAGKITGLTLRQNGATLQLPRIE"
BASE COUNT          426 a          444 c          573 g          538 t
ORIGIN      
        1 ggctgaaacc ttgcaggcat gcagccatca gcaggaaaaa gaaggtcttt ttcatgttcg
       61 tttgttttaa gcgtaataaa gaaaaacagg taccggtggg ttggaattcg aatcgctgag
      121 aatgtagggt tctgtgggta gagacaagta atgtatgtca aataatcatc aaatcaaagc
      181 aaagagttaa aacaaatgat tgatgactct tccaggctac ataaagcgga agccgttgcc
      241 gttcatactt tccagccatt gatgatcctt tcggtcatcg catcgttttg agtttgggaa
      301 gtggtcacca gcggatgtgt ttcaaaggac agggtggccg gatcatagtc cagcgctttg
      361 atgatgtcgg ccgtgggtac ggtttcgcgg ccatttttgg ccatgccgtt ggcaaagcag
      421 gcggcgatgg gtttgccatg ccgcatgatc ttctgctcta cataaaagag tttttcatca
      481 atgaatgaca tgcgggtata cacttcctct ttttgaaaca ttttgagtgg ccggtaaaac
      541 tgtacggtga tggcctggtt gggaaaataa catttgtttt tcgtggcgat cctgaaaaag
      601 ccggtgcgca ccatatagtc gatgcggccc atttcgaaga cggtcatcat ggcggcatgg
      661 ttcatcacgg tcacatcaat atctgtgacc caaacccgga aatccaccct tgtagtttcg
      721 gtcgcactga tcttgtgcct gaatttggca gcgaacagtg ccagcgccag tttgatccat
      781 ctcattgctt gttgtttttg ttcttacggg ccattgtgta cgaacaggga tactaattga
      841 ccttactaaa tcccggctgg cgaaaggtga tgccaggcgt gacattgttc cctcattcaa
      901 tccggggcag ttgcagggta gcaccatttt gccgcagggt gagaccggtt atttttccgg
      961 cggcatttcg aaacgggctg aacagggcat tgggcacctc ggcaacggtg aaagtgttag
     1021 tgtcggtaaa gatggctttg taccctaccg ggggctgtcc gttttgttga atgcagagct
     1081 gatcgccgca aatggataag gtgatggtgt cgttcatgat tttgtaatta cccacgtact
     1141 gttgcaggct gtctttgggt ggggctattt tctttttgaa ggtgggcgtg tagaaccctt
     1201 tccagtcgta tacctgcgcc acgctgttca acaattcgtt gatcaccgag aaattttcgc
     1261 cgttgatcat caccaccacg ccatcgccac cctgtagact gccataggaa gcgcatagaa
     1321 aggcctcgtt gctgccgttg tggttgaacc aggcattgcc gtttcgtttg ttgatgaata
     1381 caccgagggc cgccgaggtg tctaaatacg gtgtcagtct ttttttcatc atggcagggg
     1441 agagcacttt gccggagcgg ccttccagtg ccagctggca ttcaatgatg taccgggcga
     1501 gatcggtggg ggtggtccac aagcctgctg ccgcctgctc ggggtacaca tggtagcggc
     1561 cggtcacggg tttgccattg ccgtagtagc cggttgccag ttgcgggtgc acagccgggg
     1621 agggcggttg ctggtagctg ctgttgttca tgcccaatgg acgcagtact tgctcctcca
     1681 tccaatcggc atagttgcgc tgcgtgatat cggcgagcag aagttgcgtg atggtggtgc
     1741 caccgcccga atatttgaaa cgcaggccgg gctcgaataa ggatcgtacg gctttggtat
     1801 tggccgggcg ctggccattg agcacctgca ggatggtggg cagtgtatcg gtagtggcat
     1861 atccgggaaa tccatggata tcgagtcctg ccgtatggct cagcaattgg aagctgttta
     1921 tttttttatt ccgggccatg ctgtcgtagg ggaatttcca gcttcggagg taggtgttga
     1981 t
//
LOCUS       DATIQF010000735         2301 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_102633,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000735 DATIQF010000000
VERSION     DATIQF010000735.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2301
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102633"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..660
                     /locus_tag="VLL95_12615"
     CDS             <1..660
                     /locus_tag="VLL95_12615"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: protein motif:HMM:NF015647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HSR39748.1"
                     /translation="GEKLLFAQYPLLLNIGGIANVSASLGDEYIAFDICPANRVLNAW
                     AAQAGKAYDDGGKMAASGFVRDEVLSAMNSQPYYAQPFPKSLANDFGTDIIFPLLKNA
                     ALSVPDALRTMVEHIAIQTTRSVGRLLQRMPAEKPVSMLVTGGGAHNAFLIERLEASL
                     KPMGVQIVVPDAGIINYKEALIMALLGVLRWREENTVLHSVTGASRSSIGGAVWIGQE
                     A"
     gene            complement(932..1690)
                     /locus_tag="VLL95_12620"
     CDS             complement(932..1690)
                     /locus_tag="VLL95_12620"
                     /inference="COORDINATES: protein motif:HMM:NF014724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HSR39749.1"
                     /translation="MFFYASKIFFFFLNPVNWLLIMAASWLLVKNRVIKKRILIAAIL
                     FTVIFTNGALYGSLLMWWQPEAKPQRHSKKYDTAIMLTGISIGNSKKQRFFGSGVNDR
                     FIQAARLYHTGTVKHILISGGNGSLGKEELLEADFLYEEFQAMGIPKSALLMEKKSRN
                     TYESAVAAKPILDSLQAANSCLVVTSAMHMRRALATFHKAGIHADPHVANFEVLESRI
                     SVWSFLPDFSLLGIWKYLLKEMAGMAVYKMTGKA"
     gene            1795..>2301
                     /locus_tag="VLL95_12625"
     CDS             1795..>2301
                     /locus_tag="VLL95_12625"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSR39750.1"
                     /translation="MKFEKYQLLPAIKANLDAMGFKRPTDIQFRAIPSIMKGEDVLAI
                     AQTGTGKTAAFAIPIVQHIGSTKRRTEGIRALIMVPTRELAMQIHDVFCSIAKGTKVQ
                     VTAVVGGVEQDKQIQKLQAGIDILIATPGRMFDLIHQQYINISGTDILVLDEADRMMA
                     LGFMKDIKD"
BASE COUNT          572 a          570 c          625 g          534 t
ORIGIN      
        1 ggagagaaac tgttgtttgc gcagtacccc ttgctgctga acatcggcgg cattgccaat
       61 gtgtcggcca gcctaggcga tgaatacatt gccttcgaca tctgcccggc caaccgggtg
      121 ctgaatgcct gggctgccca ggcaggcaaa gcctatgacg atggtggaaa aatggcggct
      181 tccggttttg taagggatga agtactgagc gcaatgaaca gccagcctta ttatgcacaa
      241 cccttcccga aatctttggc caatgatttt ggcacggata ttattttccc tttgctcaaa
      301 aacgcagcat tgagcgtgcc tgatgccttg cgcaccatgg tggaacatat tgccattcaa
      361 accacccgca gtgtgggccg attgctgcag cggatgccgg cagaaaaacc ggtgtctatg
      421 ctggtaacag gcggcggcgc ccataatgcc tttctcatcg aaaggctgga ggcgtcctta
      481 aaaccaatgg gcgtacaaat agtagtgcca gatgccggca tcatcaatta caaagaagca
      541 ctcatcatgg ccctgctggg tgtattgcgc tggcgggaag aaaacaccgt attgcatagc
      601 gtcaccggtg ccagccgcag cagtattggc ggcgcggtgt ggatagggca ggaggcatga
      661 taatcacatt agagtgctcg gtaaacaact ttctatgtca gaatctcccg cagatttcgc
      721 gtatttgcca tgctgatccc gcagattttt ttcatctgcg tattctgcgc attcatctgc
      781 gccatctgcg ggaaaattaa tctgatagta tatatcaaat aaagactttc ggattaaaag
      841 tagcaagcga ctttcggaag gtaggtcgat tgtaatggca tcacacggtg tgatccatgc
      901 aactgcatca taccatgaat aaaaatggaa gtcacgcctt gccggtcatt ttgtacacgg
      961 ccatacccgc catttctttc agcaggtatt tccaaatacc cagcaggctg aaatcgggca
     1021 gaaagctcca gacacttatc ctgctttcca gcacttcgaa gttggctaca tgcggatcgg
     1081 catggatgcc agccttgtga aatgtagcca gtgcccggcg catgtgcatg gccgaagtca
     1141 ccaccaggca ggagttggca gcctgcaaag aatctaaaat gggtttggcg gccacggcac
     1201 tttcatacgt gttgcggctt tttttctcca tcagcagggc tgatttggga atgcccatcg
     1261 cctggaattc ttcgtacagg aaatcggctt ccagcagttc ctcttttccg aggctgccat
     1321 tgccgccgct gatgagtatg tgcttcacgg tgccggtatg atacagtcgt gccgcctgga
     1381 tgaagcgatc attgacccca ctgccaaaaa agcgttgctt tttgctgttg ccgatgctga
     1441 tgccggtgag catgatggcg gtgtcgtatt ttttgctgtg gcgttgtggt ttggcttccg
     1501 gctgccacca catgagcagg ctgccgtaca aagcgccatt ggtaaagatg accgtgaaga
     1561 ggatggcagc aataaggatg cgttttttta tcaccctatt tttcaccagc aaccaggagg
     1621 ccgccatgat cagcagccag ttgaccgggt tgagaaagaa gaagaaaatt ttcgacgcgt
     1681 agaagaacat ggggcgaaaa tagggtcaat tgccggggcg aaaaaggaga acgttgtggc
     1741 cccgcattgg tattaacagc ggtgcaagac gctgcaggcc tacctttgcg ccacatgaaa
     1801 tttgagaagt accaattgct gccggccatc aaagccaacc tggatgcgat gggtttcaag
     1861 cgccccaccg atatacagtt cagggccata cccagcatca tgaagggaga ggatgttttg
     1921 gccattgcgc aaacgggcac gggcaaaacc gcggcctttg ccattcctat cgttcagcat
     1981 atcgggagca caaagagaag aacagaaggg atccgggcac tcatcatggt acctacccgt
     2041 gaacttgcca tgcagattca cgatgtgttt tgcagcattg ccaaaggcac aaaggtgcag
     2101 gtgactgccg tggtgggtgg cgtggagcag gacaagcaaa tacaaaaact gcaggcaggc
     2161 attgatatcc tcattgccac gccgggccgc atgttcgatt tgatccacca gcagtacatc
     2221 aacatcagcg gcaccgacat actggtgctg gatgaagccg accgcatgat ggcgctgggt
     2281 ttcatgaagg atatcaaaga c
//
LOCUS       DATIQF010000736         4564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_27034, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000736 DATIQF010000000
VERSION     DATIQF010000736.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4564
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27034"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..734)
                     /locus_tag="VLL95_12630"
     CDS             complement(<1..734)
                     /locus_tag="VLL95_12630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39751.1"
                     /translation="MANLQKDDLFQLIKSLGKGEKRNFKLYMQRSTASGELKVVQLFD
                     ALDKMTEYDEGLLLKKNPSVSKQQLSNLKAGLYRHILASLRLIRDEENLDLQLHEMFG
                     NARLLYNKGLYMQALKVLERMKQLARDNYQFTYVQQAIFFERKIETMYITRSMEARAD
                     ELAHESDFVQARLSSVNKLSNLSLQLYGWYIKHGHARNTADEEAVDFYFETHCPPQAE
                     KLAGFYERLYLYQSYCWLSFIKQDFLT"
     gene            949..2112
                     /locus_tag="VLL95_12635"
     CDS             949..2112
                     /locus_tag="VLL95_12635"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: protein motif:HMM:NF002086.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HSR39752.1"
                     /translation="MAEKVLIFDTTLRDGEQVPGCKLNTEEKVELALLLEELGVDIIE
                     AGFPISSPGDFESVKQISQQITRSTVCALTRSVEKDIEAAAAALRYAKKPRIHTGIGT
                     SDLHIIHKFNSTREAILERAVAATKFARRFTDDIEFYCEDAGRSDNDYLARVVEAVIA
                     AGATTVNIPDTTGYCLPHQYGEKIKFLMDHVPNIDKAVLSCHCHNDLGLATANSIYGA
                     MAGARQIECTINGLGERAGNTSLEEVVMVLRQHKELGLYTDINPKLLNSISQKVSETM
                     RMPVQPNKAIVGSNAFSHSSGIHQDGFLKNASNYEIIAPEEVGAEGSKIVLTARSGRH
                     ALAYRFQNLGYSFNRDDVDALYASFLAVADRKKEVEETDLHELAMARMEVISQ"
     gene            2264..3664
                     /gene="leuC"
                     /locus_tag="VLL95_12640"
     CDS             2264..3664
                     /gene="leuC"
                     /locus_tag="VLL95_12640"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: protein motif:HMM:NF009116.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HSR39753.1"
                     /translation="MCQTLFDKIWNRHVVKTIPDGPSVLYIDKHFIHEVTSPQAFQGL
                     NKRGMKVFRPQQIVATADHNVPTLDQHLPIKEELSRKQVEALTKNCAEHGIDLYGLGH
                     QYQGIVHVIGPELGITQPGMTIVCGDSHTSTHGAFGSIAFGIGTSEVEMVMATQCLLQ
                     SKPKQMRITVDGDLQKGVVSKDIILYIISQISAAGGTGYFVEYAGSAIRSLSMEARMT
                     ICNMSIEMGARGGMIAPDETTFAYIKGREFAPQGEAWDKAVADWKTLHSDADGRFDVE
                     MHIDAADIEPMITYGTNPGMGIKVTATIPTESEVNPADKSGLSKALAYMGLEAGKAIK
                     DQPIDYVFIGSCTNSRIEDLRMVADMVKGKKKAAGVEVWIVPGSKQVEMQAREEGIDQ
                     VLEAAGFQLRQPGCSACLGMNEDKIPAGKYCISTSNRNFEGRQGPNARTFLASPLTAA
                     AAALTGKVTDVRDLLN"
     gene            3685..4335
                     /gene="leuD"
                     /locus_tag="VLL95_12645"
     CDS             3685..4335
                     /gene="leuD"
                     /locus_tag="VLL95_12645"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: protein motif:HMM:NF002458.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HSR39754.1"
                     /translation="MSEKVNGGMSEKVNEDNSKMKGIQHIRSTAVPLPVENIDTDQII
                     PARFLKATSRDGFGKNLFRDWRYSNDDEAQPKTDFVLNDTRYKGSILIAGKNFGCGSS
                     REHAAWAIKDYGFDVVISSFFADIFRNNALNNFLLPIHVSEEVLQQLLQAVFENPDTT
                     FEVDVAAQTLSVPALSLTISFELNQYKKTCLLNGFDDIDYLLSIREEIEAFEQTKH"
     gene            4355..>4564
                     /locus_tag="VLL95_12650"
     CDS             4355..>4564
                     /locus_tag="VLL95_12650"
                     /inference="COORDINATES: protein motif:HMM:NF012407.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HSR39755.1"
                     /translation="MFKRITTIFGDGIGPEVTQQSIKVLDTIAEVYGHEFAYDRALLG
                     AEAIDATGTALPQETVEKSLASDAVL"
BASE COUNT         1152 a         1147 c         1196 g         1069 t
ORIGIN      
        1 gtgagaaaat cctgcttgat gaacgagagc cagcagtagc tctggtagag atagagccgc
       61 tcgtagaagc cggccagttt ttcggcctgt ggcgggcaat gggtttcaaa ataaaaatcc
      121 actgcttcct catcggccgt attccgggca tggccatgtt tgatgtacca gccatacaat
      181 tgcaggctca ggttgctcag tttgttgaca ctcgaaagcc tggcctgtac gaaatcggat
      241 tcatgggcca gttcatcggc ccgtgcttcc atgctgcggg tgatgtacat ggtttcaatc
      301 tttctttcga aaaaaatggc ctgttgtaca taggtgaact ggtaattgtc gcgggccagt
      361 tgcttcatgc gctccagcac cttcagcgcc tgcatataga gtcctttgtt gtacagcaaa
      421 cgggcgttgc caaacatttc gtgcaattgc aggtcgaggt tctcttcgtc gcgtatcagg
      481 cgcaggctgg ccaggatgtg gcggtagagg cccgctttca ggttgctgag ctgttgcttg
      541 cttacgctgg gatttttttt gagcagcagg ccctcgtcat attccgtcat tttgtccagg
      601 gcatcgaata attgcaccac tttgagctcg ccggaggcgg tgctgcgctg catgtagagc
      661 ttgaaattgc gtttttctcc ctttcccagg cttttgatga gttgaaataa atcgtctttc
      721 tgcaggttag ccatcgtaat tctcccgtta ttgaaaccct tgtccacatt gcatttcagg
      781 ccgatgccgg ctggttggca ggcgtaaaac tgaccctact ttgatttcct ttttgcctga
      841 tatgcctgct attttcgagc cgcaggctgt ttttgttgga tatcaggcaa gcaacaacaa
      901 acttaaacag cctgcacttt tttatcctga aaattacgag gcagcaatat ggcagagaag
      961 gttttgattt ttgatactac ccttcgggat ggcgagcagg taccaggctg taaactgaat
     1021 actgaggaaa aagtagaact ggcgctgttg ttggaagagc tgggggttga catcattgaa
     1081 gctggtttcc ccatttcctc tcccggcgat tttgagtcgg tgaagcagat ctcccagcaa
     1141 attacccgtt ctacggtttg tgccctcacc cgttcggtgg aaaaggacat tgaagccgcc
     1201 gcagccgccc tgcgttatgc caaaaagcct cgtatccata cgggcatcgg cacttcggac
     1261 ctgcacatca ttcacaaatt caacagcacc cgggaggcca tcctggaacg tgccgtggct
     1321 gccaccaaat ttgcccgccg ttttaccgac gacatcgagt tttattgtga agatgccggc
     1381 cgcagcgaca atgactacct ggcccgtgtg gtggaagccg tgatagccgc cggtgccact
     1441 accgtgaata ttcctgatac cacaggctac tgcctgccgc atcaatatgg cgagaagatc
     1501 aaattcctga tggaccatgt gcccaatatc gacaaggctg tgctcagctg ccattgtcac
     1561 aacgacctgg gcctggctac tgccaattcc atttacggcg ccatggccgg tgcccgccag
     1621 atagagtgca ccatcaatgg cctgggcgaa agagccggca acacttcgct ggaagaagtg
     1681 gtgatggtgt tgcgccagca caaggaactg ggtttgtata ccgatatcaa cccgaagttg
     1741 ctgaacagca tcagccagaa agtgagcgaa accatgcgca tgcctgtgca gcccaataag
     1801 gccattgtgg gcagcaacgc tttctcgcat tcctccggta ttcaccagga tggtttcctg
     1861 aaaaatgcca gcaactatga gatcattgcg ccggaagaag tgggcgctga gggttcaaaa
     1921 atcgtactga ctgcccgaag cggtcgtcat gccctcgcct accgtttcca gaacttgggc
     1981 tactctttca accgcgacga tgtggacgct ttatacgcct ccttcctcgc cgtagccgat
     2041 cgcaaaaaag aagtggaaga aacagacctg cacgaactgg ccatggccag gatggaagtg
     2101 atcagtcaat gagtcaatgg gtcaatgagg cattggggtc aatgagtgaa taagtgaaag
     2161 ggtgatgggg tggatagggc ttcatcacga ttcaaaaaaa ttctcaaacg cattcggggt
     2221 attgcttcag aaccattatc cctctttata accgcaacaa ttaatgtgtc aaacactttt
     2281 tgataagatc tggaaccggc acgttgtgaa gaccatccct gatggtcctt ccgtgttgta
     2341 catcgacaaa catttcattc atgaagtgac cagcccgcag gctttccagg ggctgaataa
     2401 gcggggcatg aaagttttcc gaccgcagca aattgtggca acggcggatc acaacgttcc
     2461 cacgcttgac cagcatttgc ccattaaaga agagctgagc cgcaagcagg tggaagcgtt
     2521 gaccaaaaac tgcgctgaac acggcatcga cctgtacggc cttggtcacc agtaccaggg
     2581 cattgttcat gtgattggac ctgaactggg gatcacccag cctggtatga ctatcgtgtg
     2641 tggcgatagt catacttcta cccacggcgc ttttggcagc attgcctttg gcattggcac
     2701 cagtgaagtg gaaatggtaa tggccaccca gtgcctgctg caaagcaagc ccaaacaaat
     2761 gcgcatcacc gtagatggtg acttgcagaa gggcgtggta tccaaagaca tcatcctcta
     2821 catcatcagc caaatatcgg ctgccggtgg caccgggtat tttgtggaat atgccggtag
     2881 tgccattcgc agcctgagca tggaagcccg catgaccata tgcaacatga gcattgagat
     2941 gggcgcccgt ggcggcatga tcgctccgga cgagaccact tttgcataca tcaagggtcg
     3001 tgaatttgcg ccccagggcg aagcctggga caaggccgtt gccgactgga aaacactgca
     3061 cagcgacgcc gatggcaggt tcgatgtgga aatgcatatt gatgccgccg acattgaacc
     3121 catgatcacc tacggcacca atccgggcat gggtatcaag gtgactgcta ctattcctac
     3181 cgaaagcgaa gtgaacccag ctgacaaaag cggcctctcc aaagcattgg cctacatggg
     3241 gctcgaagcg ggcaaagcca tcaaagacca gccgatcgat tatgtattca ttggcagctg
     3301 taccaacagc cgtattgaag acctgcgcat ggtggctgat atggtaaagg gcaaaaagaa
     3361 agcagccggt gtggaagtat ggatcgtgcc cggcagcaag caggtagaaa tgcaggctcg
     3421 tgaagaaggc attgaccagg tactggaagc agcaggcttt caactgcgac agcccggatg
     3481 ctcggcctgc cttggcatga acgaagacaa aataccagcc ggcaaatatt gcatcagcac
     3541 ctccaacaga aattttgaag gcaggcaggg ccccaatgcc cgcaccttcc tggccagccc
     3601 gctcacggca gcggctgccg cacttacagg gaaagtgact gatgtgagag acttgttgaa
     3661 ttgaggcaat gagtgaatga gtcaatgagt gaaaaagtga atgggggaat gagtgaaaaa
     3721 gtgaatgagg ataatagcaa aatgaaaggc atacaacaca tacgatccac tgcagtaccg
     3781 cttccggttg agaatattga taccgaccaa atcattccgg cccgctttct gaaagccacg
     3841 agccgcgatg ggtttggtaa aaatcttttc cgcgattggc gatacagcaa cgatgatgaa
     3901 gcacagccga aaacggattt tgtgctcaat gatacccgtt acaaaggcag tatcctgatc
     3961 gccggcaaaa actttggttg tggttccagc cgcgaacacg ccgcatgggc catcaaggac
     4021 tatggttttg acgtggtcat cagcagtttt tttgccgaca ttttccggaa caatgccctc
     4081 aataatttcc tgctacccat acatgtaagc gaagaagtgt tgcagcaatt gctgcaggct
     4141 gtttttgaaa acccggatac cactttcgaa gtggacgtgg ccgctcaaac cttatcggtg
     4201 cccgccttgt cgctgacgat ttccttcgaa ttgaaccaat acaagaaaac ctgtttgctg
     4261 aacggattcg atgacattga ttacctgttg agcatccgcg aagagattga ggcctttgag
     4321 caaaccaaac actaaacgat tatagccata tcttatgttc aaacgtatta ccaccatatt
     4381 cggcgacggc atcggccctg aagtgaccca acaaagcatc aaggtgctgg acaccattgc
     4441 tgaagtatac ggtcatgaat ttgcctatga ccgggcattg ctgggtgctg aagccattga
     4501 tgccaccggc accgcattgc ctcaggaaac ggtagagaaa tcactggcct ctgatgctgt
     4561 tctg
//
LOCUS       DATIQF010000737         2445 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_163702,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000737 DATIQF010000000
VERSION     DATIQF010000737.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2445
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163702"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            309..1424
                     /locus_tag="VLL95_12655"
     CDS             309..1424
                     /locus_tag="VLL95_12655"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HSR39756.1"
                     /translation="MKRILVALTAIALLAACKSKDANSPDSGTVKIKGTIAGLDTGYL
                     EILIPSRENQKADSIKIDKGNFEYKVEIKEPELMAIRVAGVQSGELAFFADPGSIKIT
                     ANKDSMYSSKVEAGETQKLFKEAEGKVRSLMSKGQALYPAYMQAQQSQNMEELKRIES
                     ELIALQSEAKKYAVDFAKKHNNTVLAAYLGLVYLQEPGNEGEMKSLYDTLTPAIKKTY
                     FAKKMSEMISATASTAIGAPAPEFVLNDPNGKAVSLSSFKGQYVLLDFWASWCAPCRQ
                     ENPNVVKAYNTFKDKGFTILGVSLDKDRDAWVKAIADDQLIWTQVSDLQYWESPIARL
                     YQVSAIPANFLLDKEGRIIAKNLRGAELEARLAALLK"
     gene            1571..>2445
                     /locus_tag="VLL95_12660"
     CDS             1571..>2445
                     /locus_tag="VLL95_12660"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR39757.1"
                     /translation="MALIVELDNLVKHYGNIHALKGVTLEIPKGTVYGILGPNGSGKT
                     TMLGLIMNILQPTSGSIRLFGETPSAQHRKKIGTLLETPNFYHYLSAVRNLEIAAAIK
                     GVTHPDIDGILQKVNLLARKDSAFSTYSLGMKQRLAIASCLLGDPEVMVFDEPTNGLD
                     PVGIAEIRDLIKRLANEGRTIIMASHLLDEVEKVCTHVAILKKGTLIASGHVDEILAH
                     DDVVEAGGADADTLMRVLQSMPDQKHVVMGEQGRCLVHFAQCTANLSAVNQHCFNNGL
                     VLDHLLLKRRSLESK"
BASE COUNT          648 a          674 c          617 g          506 t
ORIGIN      
        1 cttgtcgccg gcaaagctcc actcggtggc gccttcgtag ttaaacactt ttgccttgaa
       61 atcggcggtg gtcattttta tggtggccat aataattgct cctttttggg ggatggttat
      121 tgatttggag tgcaatatta cgccatttgc caggggggta atgtgctgaa agtcactggc
      181 cagccggtgc cgataacgag gtttgcccac cccacaaaca ccccttccac ggcccggttg
      241 atgaaaccaa actttgaatg catcctaaca caattcacct tttctttgcc actcattaat
      301 cgatttatat gaaaagaatt ctcgtagcac tgacggccat cgccctgctg gcagcgtgca
      361 aaagcaagga tgccaacagc cccgacagtg gtacagtaaa gatcaaagga accattgccg
      421 gcctcgatac cggctacctg gagatcctga tcccttcccg cgaaaaccag aaggcagatt
      481 ccatcaaaat tgacaaaggc aacttcgaat acaaagtaga aatcaaggag cccgaactga
      541 tggccatccg tgtagccggc gtgcagagtg gtgaactggc cttttttgcc gaccccggca
      601 gcatcaagat cacggccaac aaagattcga tgtacagctc caaggtagaa gccggcgaaa
      661 cccagaagct gttcaaggaa gcggaaggaa aagtgcggag cctgatgtcg aaaggacaag
      721 cgctgtaccc tgcctacatg caggcgcagc aaagccagaa catggaagaa ctgaagcgca
      781 ttgaaagcga attgatcgcc ctccaatcag aagccaagaa atatgctgtt gattttgcca
      841 aaaagcacaa caataccgtg ctggcagcct acctcggcct ggtgtacctg caggagcccg
      901 gcaatgaagg agaaatgaaa agcctctatg atacgctgac accggccatc aagaaaacct
      961 atttcgctaa gaagatgagc gaaatgatca gcgccacagc ttctaccgcc attggtgccc
     1021 ctgcccccga gtttgtactg aatgatccca atggcaaagc ggtttcactg agttctttca
     1081 aaggccagta cgtgctgctc gatttctggg ccagctggtg cgctccctgt cgccaggaaa
     1141 accccaacgt agtaaaggcc tataatactt ttaaagacaa aggctttacc atcctcggtg
     1201 tgtcgctcga caaagaccgt gatgcctggg taaaagccat tgccgacgac cagctgatct
     1261 ggacacaggt aagcgacctg caatactggg aaagccccat tgcccgcctc taccaggtgt
     1321 ctgccattcc ggccaacttc ctgctcgaca aagagggccg catcattgcc aagaacctgc
     1381 gtggcgccga actggaagcc cgcctggcag cgctgctgaa ataatacagc cccacaggta
     1441 cagaaaagag gaatcatgat ggttcctctt tttttatgcc accagtaccg gcagttttcc
     1501 attgatcatc ggggcattca ttgtatcaca tttgcttgtg tgtttggggc catgccacta
     1561 aattcaccga atggcattga ttgtagaact cgacaacctc gtaaagcact atggcaatat
     1621 ccatgctttg aaaggggtaa cgctggaaat acccaagggc acggtatacg gcatcctggg
     1681 gcccaatggc agcggcaaaa ccaccatgct gggcctcatc atgaacatac tgcaacccac
     1741 cagtggcagc atccgtttgt ttggcgaaac gccttcggca cagcaccgca agaagattgg
     1801 caccctgctg gaaacgccca atttttacca ctacctgagt gcagtgcgca acctcgaaat
     1861 tgccgccgcc atcaaaggcg tgacgcaccc cgatatcgat gggatcctgc aaaaggtgaa
     1921 cctgctggcc cgcaaagaca gcgctttcag cacctactcg ctgggcatga agcaacgcct
     1981 ggccattgcc agctgcctgc tcggcgatcc tgaagtgatg gtgtttgacg aacccaccaa
     2041 cggcctcgat ccggtgggca ttgccgaaat acgcgacctc atcaaacgcc tggccaacga
     2101 aggcagaacc atcatcatgg ccagccacct gctggatgaa gtggaaaagg tttgtaccca
     2161 tgtggccatc ctgaaaaaag ggacactcat tgccagcgga catgtggatg aaatactagc
     2221 gcatgatgat gtggtggaag cgggtggcgc cgatgccgac acactgatgc gggtgctgca
     2281 atccatgccc gaccaaaagc atgtggtaat gggcgagcag ggacgctgcc tggtccattt
     2341 tgcacaatgc acagccaacc tgtccgcggt caaccagcat tgcttcaaca acggactggt
     2401 gctcgatcac ttgttgctca agcgccgcag cctcgaaagc aaatt
//
LOCUS       DATIQF010000738         2460 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_224654,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000738 DATIQF010000000
VERSION     DATIQF010000738.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2460
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224654"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..411
                     /locus_tag="VLL95_12665"
     CDS             <1..411
                     /locus_tag="VLL95_12665"
                     /inference="COORDINATES: protein motif:HMM:NF015047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018580 - nitronate monooxygenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HSR39758.1"
                     /translation="AAFCLGAEAVQVGSRFVATPEASSHHAFKEVVVNAKEGDTMLML
                     KELTPVRLLKNKFYMEVQAAEERAASKEELAALLGRGRAKKGMFEGDMNEGELEIGQV
                     SALINDIKPAAEIVQEIWQDFQQTIATLQQQLQQ"
     gene            467..1153
                     /locus_tag="VLL95_12670"
     CDS             467..1153
                     /locus_tag="VLL95_12670"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HSR39759.1"
                     /translation="MPIKVIAFDADDTLWVNEPYFRETEEKFCALLEDYMPLHSIQQE
                     LFKTEMQNLALYGYGIKGFMLSMVETALRVSNNTVSNVVMDKVLGFGKDLLGRPIELL
                     EDIESVLHALKPHYRLVVATKGDLLDQERKLKKSGLESYFHHIEIMSDKQVADYEKLI
                     RHLDIKPDEFMMIGNSLKSDVLPVLQLGGHAVHIPYHITWDHEKIDHHIEHENFRQME
                     HAGQLLRLLL"
     gene            complement(1236..>2460)
                     /locus_tag="VLL95_12675"
     CDS             complement(1236..>2460)
                     /locus_tag="VLL95_12675"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR39760.1"
                     /translation="AAVIFITVKSGKQERIVVADKSGQLKDYLKTNAKLEFSFDEAAD
                     TSLLAKGFSAVLLAPGNGINQSERYQIYTRKNLSVITEENIRRQINEAVETRLITASG
                     NISKEMYDSIRQTARGTGLDNMVVGEGEEIKAGNSAVAYGVGYGAGFLIYITLFLYGT
                     MVLRGVMEEKTNRIAEVVVSSVKPTQLMMGKIIGIGAVGVTQFLLWIILIGLLSTALG
                     ALIPADVMAQANEMNRNVPGAAMSAQTNESIAAIAKAKATLSSVNWWLITFCFLFYFT
                     FGYLFYAALFAAVGSAVNEDPQDAQSLMLPITMPIILAIIIMMNAITQPESQLATWSS
                     IIPFFSPIVMMARIPFGVPGTVPYWQLGLSMLLLVGGFLATTWLSGKIYRTGILLYGK
                     KVTMKEMWKWAFKKS"
BASE COUNT          662 a          628 c          606 g          564 t
ORIGIN      
        1 gcggcctttt gcctcggcgc agaagcagtg caggtcggaa gccgatttgt ggccacacct
       61 gaagcaagca gtcaccacgc tttcaaagaa gtagtagtaa atgccaaaga aggcgacacc
      121 atgctgatgc tgaaagaact gacaccggta cgccttctca aaaacaaatt ctacatggag
      181 gtgcaagcgg ccgaagaaag ggctgccagc aaagaagaat tggccgccct gctcggcaga
      241 ggccgcgcca agaagggcat gtttgaagga gatatgaacg aaggtgaact ggaaatcggc
      301 caggtcagcg ccttgatcaa cgacatcaag ccagccgcgg aaatagtgca agaaatatgg
      361 caggattttc agcaaaccat tgccacgctt cagcaacagc tgcaacaata aacccgtcaa
      421 cctgtgaacc cgtgaacttg tgaactttta aacttacagc acaaccatgc caatcaaagt
      481 aattgccttt gacgccgacg atacgctttg ggtgaacgaa ccttacttcc gcgaaaccga
      541 agaaaaattc tgtgccctgc tggaagatta tatgccgctg cacagcattc agcaggagct
      601 gtttaaaacc gaaatgcaaa acctggccct atacggctat ggtatcaaag ggtttatgct
      661 aagcatggtg gaaacagcgc tgcgggtgag caacaacacc gtgagcaatg tggtgatgga
      721 caaagtgctt ggctttggca aagacctgct gggcaggccc attgaattgc tcgaagacat
      781 cgaatcggtg ctgcatgcac tcaaaccgca ttaccgcctg gtggtggcca ccaagggcga
      841 cctgcttgac caggaacgca aactgaaaaa gagtggtctc gaatcctatt tccaccatat
      901 tgaaatcatg agcgataaac aggtggcaga ttatgagaaa ctgatccgtc acctcgatat
      961 caagcctgat gaattcatga tgataggcaa ctcactgaag agcgatgtat tgccggtgtt
     1021 gcagttgggc ggacatgccg tgcatattcc ttatcacatt acatgggatc atgaaaagat
     1081 tgaccaccac attgagcatg aaaatttcag gcagatggaa catgccgggc aattgctgag
     1141 gctgttgctt tgatggatgg aagaattcta acgcaagcgc tataagacaa ccgacgaccg
     1201 acgactgaca accgtcaacc gtcaaccatc aactgtcaac tctttttaaa agcccatttc
     1261 cacatttctt tcatggtcac tttcttgccg taaagcaaga taccggtcct gtagatcttg
     1321 ccactgagcc aggtggtggc gaggaaacct cccacgagca acagcatgct caatcccagt
     1381 tgccagtaag gcaccgtacc cggtacgcca aaaggaatgc gtgccatcat cacaatgggc
     1441 gaaaagaaag gaattatact cgaccaggtg gccagttgac tttcgggctg cgtgatggca
     1501 ttcatcatga taatgatggc caggattata ggcatggtga taggcagcat caggctttgt
     1561 gcatcctgcg gatcctcgtt cacggcactg cctactgctg caaacaaagc agcataaaac
     1621 aggtagccaa aggtgaaata gaacaggaaa cagaaagtga tgagccacca gtttaccgaa
     1681 ctcaatgtgg cttttgcttt ggcaatggcc gcaattgatt cattggtttg cgccgacatg
     1741 gctgctcccg gcacattgcg gttcatttca ttggcctgtg ccattacatc ggcaggtatc
     1801 agggcgccaa gcgccgtact caacagtcca atcaggatga tccacagtag gaattgcgtt
     1861 acacccacag cccctatgcc aatgatcttg cccatcatga gttgggtggg ctttacactg
     1921 cttaccacca cttccgctat acggttggtc ttttcttcca tcacgccacg cagcaccatg
     1981 gtaccataca ggaacagcgt gatgtaaatg aggaacccgg caccgtatcc cacgccatag
     2041 gccaccgcac tattgccggc tttgatttct tccccttcgc ccaccaccat attgtcgagg
     2101 ccggttccac gggctgtttg ccggatagag tcgtacatct cttttgaaat gttacccgat
     2161 gcagtgatca gtcgcgtttc cacggcttcg tttatctggc ggcgtatatt ttcttcggtg
     2221 atgacactca ggtttttgcg ggtgtatatc tggtaccgct cggattggtt gatgccatta
     2281 ccgggcgcca gcagcacggc agaaaatcct tttgccagca aagaggtatc agcggcttcg
     2341 tcaaatgaaa actcaagctt ggcattcgtt ttcaggtaat ccttcagttg cccgctttta
     2401 tcggccacca caatgcgctc ctgcttgccg ctctttactg ttataaaaat gactgcagca
//
LOCUS       DATIQF010000739         7713 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_194113,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000739 DATIQF010000000
VERSION     DATIQF010000739.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7713
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194113"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..630
                     /locus_tag="VLL95_12680"
     CDS             <1..630
                     /locus_tag="VLL95_12680"
                     /inference="COORDINATES: protein motif:HMM:NF024974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility-associated C-terminal
                     domain-containing protein"
                     /protein_id="HSR39761.1"
                     /translation="VYTSNGNRTIILEVSNGICTDSAIQVFSTAATRVKAAFDFPEFA
                     CPNDTVLFADKSTGPVVAWQWNFGNGFSSTLKNPPPQYYISAAALSSIPVKLVVYHAN
                     GCSDSVTNRIQVPNNCYIAVPSGFTPNGDGLNDYLYPLNAWKAKELHFRVYNRYGQLI
                     WETRDWTRKWDGRINGKPLETGTYVWMLEYVDGDSGKKISQKGTTVLIR"
     gene            920..1306
                     /locus_tag="VLL95_12685"
     CDS             920..1306
                     /locus_tag="VLL95_12685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39762.1"
                     /translation="MKRKQFLLWGAAGMAAVAVPTYWYYFTDADYDQAMARPEALSLI
                     WEDAAIRDIGKKYQALPAGESRQRGLVNALSTLKAKDSKATAEAIEQQIKKDFETGNT
                     VLVDGWILSKTEARQCALYSTTPQKQ"
     gene            1309..2856
                     /locus_tag="VLL95_12690"
     CDS             1309..2856
                     /locus_tag="VLL95_12690"
                     /inference="COORDINATES: protein motif:HMM:NF017050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HSR39763.1"
                     /translation="MHIDARQLPDNSLIEGDICIIGTGPAGSSIAMDWMNTRYKVILL
                     ESGGFEYDDKVQDLYKGKGTGQKYYPLRASRLSYFGGTSNHWAGMCAPFDNIDFMKRD
                     WVPHSGWPITRQDLDPYYARACEKLKLGPYNFDLQFWQNEKPNMNPFPLDPSIVWHKI
                     WQISGVSGFVGGFNKAYKETIVNARNIHLYTYATVVNINANDSVKEITSVTVKNHVGK
                     THTVKARHFILAGGTIQNARMLLASNTQAPKGLGNDNDLVGRFFMEHLEIDTAEMWLL
                     KPFPTDLFNWSPIWCEFAITEKVQFEKKITNGTCGPMPLAWAKHSKPRMETWQNEDPR
                     KSADNMFKNWDEAGKLAEKENKGAITRAFSFQTRIEQAPNPDSRITIGPEKDELGVPR
                     ANLNWALTDLDKRSIRTINKIIGEQIGRSGVGRVRLKDFIQDENDMSWPEGTNGGWHH
                     MGTTRMSDSPKTGVVDANCQVFGLSNLYVAGAACYTTSGAPNPTFTLVALSLRLSDFV
                     KSKMGVA"
     gene            2983..3966
                     /locus_tag="VLL95_12695"
     CDS             2983..3966
                     /locus_tag="VLL95_12695"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSR39764.1"
                     /translation="MIRFLQRISRKKAVRIVGISYLLIIAIGFTLDYYYQFRLSDEAT
                     LAYFHGKKQPINIRYYQTHGREMRYVYTGDNAAKPTILFIHGAPSSSSYFRDYLSDTL
                     LRQQANLFAVDRPGYGYSGFGDPVVDIQQQAAMIRPILDSLHQAHRPVILVAASYGTS
                     VASRIAMDYPQLIDGLVLLAPSLAPGEEKTYSISYVLETPLFSWVQPRMIHSANVEKL
                     SHEQQLKNMLPYWKNITVPVIYFQGDKDELIYTSNATFAKAHLVNSQCLTVKMLPDLG
                     HLIAFKAKSEITKAIAEMTGMAADYYASRTDAPQRMEARSKAIVSTRTSVQ"
     gene            complement(3935..4447)
                     /locus_tag="VLL95_12700"
     CDS             complement(3935..4447)
                     /locus_tag="VLL95_12700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39765.1"
                     /translation="MFTKAQAEAYFLAEKQESLVFLIIGIVAILSAIGFLAVVKTPFY
                     KGLSIPLIAIGIIQCTVGYTVYTRSDAQRKDIVYKMDMNTDALRKEELPRMKTVMKNF
                     AIYRWVEISLLAVGLMMIFWFRNQDNRHWLLGIGVGLAIQSALMLGADYFAEKRGHEY
                     FTGLKSWLKQ"
     gene            complement(4469..5053)
                     /locus_tag="VLL95_12705"
     CDS             complement(4469..5053)
                     /locus_tag="VLL95_12705"
                     /inference="COORDINATES: protein motif:HMM:NF012479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HSR39766.1"
                     /translation="MTIKQRLLKLVYPIFMLLQKKSGQTNMQSKPDAMPESPVSFFSL
                     SASNNAGKPFPFSDLKGRYVLIVNTASECGYTPQYTALEALHQQYRDKVAVIGFPANN
                     FGGQEPGSDDNIASFCQVNFGITFPLMKKADVVGAQMQPVYQWLTQPAQNGWNSKKPE
                     WNFSKYLVSPQGELLHYFPPGIDPLDEAITKYLS"
     gene            complement(5149..6180)
                     /locus_tag="VLL95_12710"
     CDS             complement(5149..6180)
                     /locus_tag="VLL95_12710"
                     /inference="COORDINATES: protein motif:HMM:NF024874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSR39767.1"
                     /translation="MIITYDSSTADMPRPTHNPSLPFIIDNWQGNPLNEKNQYINLDG
                     PSQRNYWQVLKWQAEKKPLKPLKKKQHHGIEITHDDQLTQNTDNGITWLVHASFLLSI
                     DGKQIITDPILGKLPVVVHQIKRYTPLPISYDKLKHIDYILLSHNHRDHCDQRSLQIL
                     TTLNPNAIILTGLGIAPMLRKWGIQNPIIEAGWFQRYNIEEDFSVTYLPAKHWNRRGL
                     TDLNEMLWGSMMIESKAGNIYFGADSGLGTHFDQIAALYPQIDYAMIGIGAYKPEWFM
                     HPSHTSPADALVVLQQLKARQLVPMHYGTFDLSDEPIFYPKQEMLRLQEENNISNVLH
                     LGIGGKHYF"
     gene            complement(6149..6601)
                     /locus_tag="VLL95_12715"
     CDS             complement(6149..6601)
                     /locus_tag="VLL95_12715"
                     /inference="COORDINATES: protein motif:HMM:NF019238.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1569 domain-containing protein"
                     /protein_id="HSR39768.1"
                     /translation="MAASIFNSADELKISARIANVQPISDRQWGTMTPEEMCWHCRRQ
                     LEFILDPQPAKVLNTMFRFQPFKYLAIFVIPWPKGSPTAPSLDVKKSNPQVGDMLTEK
                     QKLLNALQQVLMKHDINATHPLFGELKKHYWGRLIWKHLDHHLRQFNC"
     gene            complement(6630..>7713)
                     /locus_tag="VLL95_12720"
     CDS             complement(6630..>7713)
                     /locus_tag="VLL95_12720"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSR39769.1"
                     /translation="VQPEPRGVSLIIGPWNYPFLLVFQAIVNSIAAGNTIILKPSEES
                     CATEAVIKKLVEATFEPEYFAVVTGPGHLVSQHLIEKHHLDIVFFTGSTAVGQKVMLS
                     AAKQLTPVILELGGKSPCIIAPDAAIDYTARKVLFTTFLNKGQTCVAADYLLVHESIK
                     EKMVAALKKYIVQFYGEDPKQSPDYGRIINQKHFLRLQSYLTQGRILHGGECDINDLY
                     MAPTLMDNVSLDDPIMQDEIFGPIVPILTYQTNEEALEIIERNPYPLALYVYTSNSQT
                     EKFFMERIRFGGGCVNNGVIHLGNSHLPFNGVGFSGISGYHGKSGFDAFSHLKSIMRS
                     PTWVDVPLWYAPYKGWYVKVLRRLLR"
BASE COUNT         1962 a         1924 c         1888 g         1939 t
ORIGIN      
        1 gtctatacca gcaatggcaa tcgcaccatc attcttgaag tcagcaacgg catctgcacc
       61 gatagcgcca tccaggtatt cagcaccgca gccacccgtg taaaagcagc cttcgatttt
      121 cctgaattcg cctgccccaa cgacaccgtt ttgtttgcag acaaaagcac tggtcctgta
      181 gtggcctggc aatggaattt tggcaatggc ttcagcagta ccctcaaaaa tccaccaccg
      241 caatattata tcagtgcggc agcgctcagc agcatcccgg tgaaactggt ggtataccac
      301 gccaatggtt gttccgattc tgtaaccaat cgcatacagg tgcccaacaa ctgctacatc
      361 gctgtgccca gcggctttac acccaatggc gacgggttga acgactatct ctacccgctc
      421 aatgcgtgga aggcgaaaga actgcacttc agggtgtaca accgttatgg acaactgatc
      481 tgggaaaccc gcgactggac ccgcaaatgg gatgggcgca taaatggcaa accactcgaa
      541 accggcacct atgtgtggat gctggaatat gtggatggcg acagtggcaa aaagatatcg
      601 cagaaaggca ctacggtgct gatcaggtag cgcctttgca gttcacgttt ctctttcaac
      661 attttgcctc atgatcgcag tggactttcc ggttatcctg cttcgaaaaa gaattgcatg
      721 atctccttag ttctattcat tgtgcacaca ccaatgtaaa ttgggttgtg ataaataaat
      781 aaaaacttgt attcgttaga ttattaatct acattgaaag ggttaagcac aacggtatcg
      841 atcctacaag ccctttccca ataaccttaa tgtttgcttg cagcaataat tttctttttg
      901 accctgattc ccttgaacaa tgaagcgcaa gcaatttttg ttgtggggtg ctgccggcat
      961 ggctgccgta gcagttccaa cttactggta ctactttacc gatgcggatt atgaccaggc
     1021 aatggccagg cctgaagcct tatccctgat ttgggaagat gctgccattc gcgacattgg
     1081 taaaaaatac caggccctgc ctgcaggtga aagcaggcaa cgcggacttg taaatgcttt
     1141 atcgacgcta aaagccaagg atagcaaagc taccgctgaa gccattgagc aacagatcaa
     1201 aaaagacttc gaaaccggta atactgtatt ggtagacggg tggatccttt ccaaaactga
     1261 ggctcgccag tgtgccttgt attctaccac accccaaaag caatagtcat gcacattgac
     1321 gcaagacaac tccccgacaa ctcccttatt gaaggcgaca tttgtattat cggcaccggc
     1381 ccagcaggtt ccagcattgc catggactgg atgaatacca ggtacaaagt catcttgctg
     1441 gaaagcggcg gctttgaata cgacgacaaa gtgcaggatc tctacaaagg caagggtacc
     1501 ggtcagaagt actatccact cagggccagc cgcctcagct attttggggg caccagcaac
     1561 cactgggctg gcatgtgtgc gcctttcgac aatattgatt tcatgaaacg cgactgggtg
     1621 ccacacagtg gatggcccat cacccgccag gatctcgatc cctactatgc aagggcttgc
     1681 gaaaaactga aactaggccc ctataatttc gacctccaat tttggcagaa tgaaaagcca
     1741 aacatgaatc cttttccgct agaccccagc attgtgtggc ataaaatttg gcagatcagc
     1801 ggcgtatctg gtttcgtagg aggtttcaac aaagcatata aagaaacaat tgtaaatgcc
     1861 aggaatattc acctgtacac ctacgccact gttgtaaata tcaacgccaa tgatagtgtg
     1921 aaggaaatta cctcagtaac agtgaaaaac catgtcggca aaacgcatac cgttaaagcc
     1981 aggcacttta tactggcggg aggtaccatc cagaatgccc gcatgttgct ggcctccaac
     2041 acacaggcgc ccaaagggct gggaaacgac aacgaccttg ttggtcgatt tttcatggag
     2101 cacctcgaaa ttgataccgc cgaaatgtgg ttgcttaaac catttcctac ggaccttttt
     2161 aactggtcgc ctatctggtg tgaatttgcc attactgaaa aagtacaatt cgaaaagaaa
     2221 ataacgaatg ggacctgcgg acctatgcct ttagcatggg ccaaacattc gaaaccccgc
     2281 atggaaacct ggcaaaatga agatccgaga aagtctgccg ataacatgtt taagaattgg
     2341 gacgaagctg gcaagctggc tgaaaaagaa aacaaaggtg ctattacccg ggcattctct
     2401 tttcaaacac gcattgagca ggctcccaat cccgactcaa ggattacgat cggtcctgaa
     2461 aaggatgaac tgggcgtgcc gagggccaat ctcaactggg cccttaccga tctcgacaag
     2521 cgcagtatcc gcaccatcaa taagattatt ggcgaacaaa ttggccgatc aggagtgggc
     2581 agagtaagac ttaaggactt catccaagac gaaaacgaca tgagctggcc ggaaggcacc
     2641 aatggcggct ggcaccacat gggcactacc cgcatgagtg acagtcccaa aaccggtgtg
     2701 gtggatgcca actgccaggt gtttggtttg agcaacctgt atgtggcagg agcagcatgc
     2761 tataccactt ccggtgcgcc caatcctacc ttcaccctcg tggcgctctc gctgcgctta
     2821 tccgattttg taaagagcaa aatgggtgta gcctgaaccg gcaaatagtt gccgaatatt
     2881 caatgccgag tattcgcatt cttttatggt attgcaaaca ttgtgtttgc aacaatccgc
     2941 tgtcctttgc tgttctttca attttacaga acgacaaaga caatgatccg ttttctccaa
     3001 cgcatttcca ggaaaaaagc agtccgcatc gtgggcattt cctatttgct gatcattgcc
     3061 attggattca cccttgatta ttactaccag ttccggctca gcgatgaagc cactcttgcc
     3121 tacttccatg gcaagaagca acccatcaat atccggtatt accaaaccca tggccgcgag
     3181 atgcgctatg tgtataccgg cgataatgca gccaaaccca ccattctctt tattcacggg
     3241 gcacccagca gcagcagtta tttccgtgat tatttgtcgg ataccctcct gcggcaacag
     3301 gctaacctgt ttgctgtaga ccgcccgggc tatggctatt ccggctttgg cgatccggtc
     3361 gtggatatcc aacaacaggc agccatgata cggcccattc tcgatagcct gcaccaggcc
     3421 caccgcccgg taatattggt ggcagcttct tacggcactt cggtagcctc ccgcatcgcc
     3481 atggattacc cgcaattgat agacgggttg gtattgctgg ccccttcact ggcgccgggt
     3541 gaagaaaaga cctacagcat cagctacgta ttggaaacgc ccttgttcag ctgggtacag
     3601 ccccgcatga tccattcggc caacgtagaa aaactgtcgc atgagcaaca gttgaaaaac
     3661 atgctgcctt attggaagaa catcactgtc ccggtcattt atttccaggg cgacaaagac
     3721 gaactgatct ataccagcaa tgcaactttt gccaaagcgc atttggtaaa cagccagtgc
     3781 cttacggtga aaatgctgcc cgacctcggg cacctcattg cgttcaaagc aaaatctgaa
     3841 ataacgaaag ccattgcaga aatgaccggg atggctgcag actactatgc cagtcgcaca
     3901 gatgcgccac aacgcatgga ggccaggtca aaggctattg tttcaaccag gacttcagtc
     3961 cagtaaaata ttcgtggccc cttttttcgg cgaaatagtc agcccccaac atcagggccg
     4021 actgaatggc caagcccacg ccaatgccta atagccaatg gcgattgtcc tggtttcgaa
     4081 accagaagat catcatcaat ccaacagcga gcaggctgat ctccacccaa cggtaaatag
     4141 cgaaattttt catcacggtt ttcatccgcg gcaattcctc tttgcgaagc gcatcggtat
     4201 tcatgtccat cttgtacaca atgtctttgc gctgcgcatc gctgcgggta tacacggtgt
     4261 agccaactgt acactggata ataccgattg caatgagcgg aatggagagt cctttgtaga
     4321 aaggcgtttt caccacggcc agaaatccaa tggccgacag gatggcaaca atgcctataa
     4381 tcagaaagac aagactttcc tgtttttctg ccaggaaata ggcttcggcc tgtgctttgg
     4441 taaacatgac tgttgaaatg gtacagtcct aagataaata ttttgtgatg gcttcgtcca
     4501 gcggatcaat tccgggcgga aagtaatgca gcagttcgcc ctgcgggctc accaggtatt
     4561 tgctgaaatt ccactccggc tttttgctgt tccatccgtt ttgtgccggt tgggtcagcc
     4621 attggtaaac gggttgcatt tgtgcgccta ccacatccgc ctttttcatg agcggaaaag
     4681 tgatgccaaa attcacctgg caaaaactgg cgatgttgtc atcactcccg ggctcctgcc
     4741 cgccaaagtt gttggccgga aaaccaatca ccgcaacctt gtcgcggtac tgctggtgca
     4801 atgcttccag tgccgtgtac tgcggcgtat agccacactc gctggcggtg ttcacaatca
     4861 gtacgtaccg gcctttcaga tcgctgaacg gaaatggctt gccggcattg ttgctggcag
     4921 aaaggctgaa aaatgaaacc gggctttcag gcatagcatc aggtttggat tgcatattgg
     4981 tttggccgct tttcttctgc agcagcatga atataggata taccagtttg agtaatcgtt
     5041 gcttgatggt catggtacaa taacagggga ttcgaaaaaa agttagtgag gatctttcag
     5101 tcgtgcactt tcctttgtga atcttagtgc ccttggtggg aaacagtctt agaaatagtg
     5161 cttgccgcca atacccaaat gcagcacatt gctgatattg ttttcttcct gcagtcgcag
     5221 catttcctgt ttgggataaa agatgggttc atcactcagg tcgaaggtgc cgtaatgcat
     5281 gggcaccagc tgccgggctt tcagttgttg aagcaccacc aacgcgtcgg ccgggctggt
     5341 atgcgaggga tgcatgaacc actcaggttt atacgctcca ataccaatca tggcataatc
     5401 aatttgtggg tagagggctg ctatctggtc gaaatgcgtt cccagcccgc tgtcggcccc
     5461 gaaataaata ttgcctgcct tgctttcaat catcatgctg ccccaaagca tttcattcag
     5521 gtcggtgagg ccacgccggt tccagtgttt ggcaggcagg taggtcacac tgaaatcttc
     5581 ttctatgtta tagcgctgaa accaacccgc ttcaatgatc gggttttgga tgccccattt
     5641 gcgaagcatg ggcgcaatac cgaggccggt aagaatgatg gcattgggat tgagcgtggt
     5701 cagaatttgc aggctgcgct ggtcgcaatg atcgcgatga ttgtggctga gcaaaatgta
     5761 atcgatgtgc ttcagcttgt cgtaactgat gggcagtggt gtgtatcgct tgatctggtg
     5821 caccaccacc ggcagttttc ctaaaatagg atcggtgatg atttgctttc cgtcgatgct
     5881 aagaagaaaa ctggcatgga ccagccaggt gatgccgttg tcggtgtttt gtgtcagttg
     5941 atcgtcgtgg gtgatctcaa tgccatgatg ctgttttttc ttcagcggtt tcaatggctt
     6001 cttttctgcc tgccacttga gcacctgcca atagttgcgc tgcgaagggc catccaggtt
     6061 gatgtattga tttttttcat tcagtggatt gccctgccag ttgtcgataa tgaatggcaa
     6121 tgatggattg tgcgtaggcc ttggcatatc agcagttgaa ctgtcgtaag tgatgatcaa
     6181 gatgtttcca gatgaggcga ccccagtagt gctttttcaa ctcaccaaac aggggatgcg
     6241 tggcattgat atcgtgcttc atcaacacct gttgcaacgc attcagcagt ttttgttttt
     6301 cggtcagcat atctcccact tgcgggttgc ttttcttcac atccaggctt ggcgcggtgg
     6361 gtgagccctt tggccagggg atgacaaaaa tggccaggta tttgaatggc tgaaaacgaa
     6421 acatcgtgtt cagcactttt gccggttggg gatcaagaat gaattcgagc tgccgccggc
     6481 aatgccagca catttcttcg ggtgtcatgg ttccccattg ccgatctgaa atgggctgaa
     6541 cgtttgcgat gcgagcagaa attttcagct catcggcgct attgaaaata ctggctgcca
     6601 tgtagcgaat ttactgttgt gaggaataat caccgcaata gtcggcgcaa cactttcaca
     6661 taccatcctt tgtaaggtgc ataccacaag ggtacatcca cccaggttgg cgaacgcatg
     6721 atgcttttca ggtgcgaaaa agcatcaaag cccgacttgc cgtggtaacc actgatgccg
     6781 ctgaatccca cgccattgaa tggaagatga gaattgccca aatggatcac gccattgttc
     6841 acacagcccc cgccaaagcg aatgcgttcc ataaagaatt tctccgtttg gctgttgctg
     6901 gtgtatacat acaaggccaa cggatacggg ttgcgctcaa tgatctccaa cgcttcttca
     6961 ttggtttggt aggtgagtat gggaacaatg ggaccaaaaa tctcatcctg catgatggga
     7021 tcatcaaggc tcacattgtc catcagcgta ggcgccatgt acaaatcgtt gatatcgcac
     7081 tcaccgccat gcaggatgcg gccttgtgtc aaatacgatt gcagtcgcag aaaatgtttt
     7141 tgattgatga tgcgtccgta atcggggctt tgctttggat cctcgccgta aaactgtacg
     7201 atgtatttct tcaaagccgc caccattttc tccttgatgc tttcgtgcac cagcaggtaa
     7261 tcggcggcta cgcaggtttg tcccttgttc aggaaagtgg tgaacagcac tttgcgggcc
     7321 gtataatcaa tcgccgcatc cggggcgata atgcacgggc tcttgccacc cagttcgagt
     7381 attaccgggg tcagttgttt ggctgccgac agcattactt tttggccaac cgccgtactg
     7441 ccggtgaaga atacaatatc aaggtggtgc ttttcgatga ggtgctggct caccaaatgc
     7501 ccggggccgg taaccactgc aaaatattcc ggttcaaaag tggcctccac caattttttg
     7561 atcacggctt ctgtagcaca ggattcttcc gatggtttga ggatgatggt attgccggcg
     7621 gcaatgctgt tgacgatggc ttggaacacc agcaagaaag gatagttcca cgggccaatg
     7681 atcaatgaaa cgcctcgcgg ctcgggctgc act
//
LOCUS       DATIQF010000740         3995 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_72442, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000740 DATIQF010000000
VERSION     DATIQF010000740.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3995
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72442"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..654
                     /locus_tag="VLL95_12725"
     CDS             <1..654
                     /locus_tag="VLL95_12725"
                     /inference="COORDINATES: protein motif:HMM:NF019040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HSR39770.1"
                     /translation="LQRVSDAIKAFQDDLKFLGVEDRVVGMTFSEFGRRIKSNGSTGT
                     DHGAAAPLFLFGKNVNGGITGTSPQLPASATVNDNIAFQYDFRSIYGSILESWFCLDN
                     TTIQSLLLKNFQRLPVINGKGCGIEPVATGNGSVRNYPNPFESQTTIEFATNGGHTML
                     QVIDMTGRVIAVLVDKTYAAAMTDRVVFNGGTLPAGSYYARLQNESQTKVALMLKLR"
     gene            853..3108
                     /locus_tag="VLL95_12730"
     CDS             853..3108
                     /locus_tag="VLL95_12730"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR39771.1"
                     /translation="MVLSGKVTDDHTSLPLEGATVHIEGTDKNTTTASDGSYRFSNLC
                     AGSYRVRISHINCDPETFTVVLKSSQRRDVLMHHTKVELQGVTVQGLRVNNTQVIEKV
                     NTQDIANNRAMGLGDVVKNINGVTLLSTGSTITKPVIHGLHSNRILIMNNGVRLEGQQ
                     WGNEHAPEVDPYMAGRFQVIKGAAAVRYGADAIAGVVMVEPRPMPSQPGMQGEFNGAF
                     LSNNLMGVANAIVEQKLAKSPFAWRLQATAKKGGTTRIPGFWLANTGVQELNYSATMA
                     YKKERWGVEAFFSAFNTKLGLFPGAHVETVAGLDSALKSPVPLPSFRSDFTYRIERPR
                     QEVQHYTGKVSAFYKLGSTSRLNMLLAHQENMRDEYDSRAFIELPEMSLDLGTTSGEL
                     VFEKTFSQKHLLQVGSLVQRQENVNGAISARQFIRNYKSWMAGGFAIYQFTVNRFDIE
                     AGTRYDYRFFESYYRPAGSSVVEVQTRNFNNISGSVGVLYRLSPEMRLRANVASAWRP
                     PAPNELYANGVHQGLAAVEIGNPDFKAERALNMNIEWQYNHDSSFSATVTLYHNRISD
                     FIYLAPTPPAILTIRGYYPVFTYRQTDASFTGADLQTISRWGRLAWTAKASLLFARDL
                     KADDWLIFMPPNRLENSIDWSFRPAHSNSRYYQTYAGANWLWVSEQTRIPDADVAADY
                     APPPAAYHLFGLEAGTTHRSSGIELGLNITNLFNASYRDYLNRLRYFSDAAGINVQLR
                     ARIPFHFHKHS"
     gene            3132..3695
                     /locus_tag="VLL95_12735"
     CDS             3132..3695
                     /locus_tag="VLL95_12735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39772.1"
                     /translation="MMTMLRSSLIRFGYLLASTILLAACNKNSSNPAEDTDHAAVTTA
                     ILQFKQGGVVKFEYGFDDPDGIGGNAPTRFDKIVLDKGQTYTVDLVLQNKTGGSTKDM
                     TASIRSAGKYHEFFYLPQGFSMNITKDDKDELGFPLGLQSTWVSSAAPASGVLRFTLQ
                     HLLVKKPVNQPTDGHSDIAIDFPIEIK"
     gene            3767..>3995
                     /locus_tag="VLL95_12740"
     CDS             3767..>3995
                     /locus_tag="VLL95_12740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39773.1"
                     /translation="MKKIVMMICLVAGVASVAQAQARFGVKAGYTNSTWSGDLIDADE
                     KKSNNGFHAGLVAEWGLKNNFYFQPHLMFVRK"
BASE COUNT         1021 a         1024 c         1009 g          941 t
ORIGIN      
        1 ctgcagcggg taagcgatgc catcaaagcc ttccaggatg acctgaagtt tttgggtgtt
       61 gaagaccggg tggtgggtat gaccttcagc gaatttggcc gacgcatcaa aagcaacggc
      121 agcacgggaa ctgaccatgg agccgcggcg ccattatttc tttttggtaa aaacgtgaat
      181 ggcggtatca caggtacttc accacagttg ccggccagcg ctactgtaaa tgacaacatc
      241 gctttccaat acgattttcg aagcatttac ggcagcattc tggaaagctg gttctgcctc
      301 gacaacacta ccatacaaag cctgctgctc aagaattttc agcggctacc ggtcatcaac
      361 ggcaagggct gcggcataga gccggtggca acaggaaatg gctctgtgcg caattatccc
      421 aatccgtttg aaagccaaac caccattgag tttgctacca atggcgggca taccatgcta
      481 caggtcatcg acatgaccgg cagggtcata gccgtcctgg tcgacaaaac ctatgctgcc
      541 gccatgaccg acagggtggt ctttaatgga ggtacactgc cggctggaag ctactatgcc
      601 cgcctgcaga atgagtcgca aaccaaggtg gcgctgatgc tcaaactgag gtgatgccta
      661 gttttatctt catcggatta ataatggccg tcctaagaat gactgtatga ttgttgcaat
      721 tatttgacac aatgttgcaa tcgtttattc tacatttgca ccatgtgttc ttggcaaaaa
      781 atactgggaa gcctgctgtt cacggcagtt cttctgtggc aattgccggt tggtgcgcaa
      841 cagccttgct ccttggttct cagtggcaag gtgaccgatg accacaccag tttaccattg
      901 gagggagcca cggtgcacat tgaaggcaca gacaagaaca ccacaaccgc cagcgacggg
      961 agttaccggt tttccaattt gtgtgcaggt agctacaggg tgcgcatttc tcatattaat
     1021 tgtgatcctg aaacttttac tgtggtactg aagtcaagtc agcggcgcga tgtactgatg
     1081 caccatacca aggtagaatt gcagggagta accgttcagg gcctgagggt gaacaataca
     1141 caggtgattg aaaaagtgaa cacgcaggac atagccaata acagggcaat gggcctgggt
     1201 gatgttgtaa agaacatcaa cggggtgaca ctgttaagca ccggcagcac cattaccaaa
     1261 ccggttattc atggcttgca cagcaatcgt attctcatca tgaacaacgg cgtacgactg
     1321 gaagggcaac agtggggcaa cgagcatgct ccggaagtgg acccttacat ggcaggccga
     1381 ttccaggtaa ttaagggcgc cgccgcagtt cgttatggcg ccgatgccat tgccggtgtg
     1441 gtaatggtag agcctcgccc catgccttca cagcctggca tgcaaggtga gttcaacggt
     1501 gcattcctaa gcaacaacct gatgggagtg gcgaatgcga ttgtcgaaca gaaactggca
     1561 aaatcgccat ttgcatggcg cctccaggct actgccaaaa aaggtggcac cactcgcata
     1621 cctggctttt ggctggccaa taccggcgtg caggaattga actacagtgc cacgatggcc
     1681 tataaaaaag agcgttgggg cgtggaagcc tttttcagtg cattcaacac caaactggga
     1741 ttattcccag gggctcacgt ggaaacagtt gcaggcctcg acagtgccct taaaagcccg
     1801 gttcctttgc cctcctttcg atcggacttt acttaccgga tagaaagacc acgccaggaa
     1861 gtacagcatt ataccggcaa agtgtctgca ttttacaaat tgggatctac ttcacgtttg
     1921 aatatgttgc tggcccacca ggaaaacatg cgtgatgaat atgacagccg ggcatttatt
     1981 gaactgccag aaatgagcct ggacctgggt accacttccg gcgaattggt ttttgaaaag
     2041 acattctccc aaaaacacct gctgcaagta ggtagcctgg tacagcgcca ggagaatgtg
     2101 aatggtgcca tcagcgcccg gcaatttatc cggaattaca aaagctggat ggcgggtgga
     2161 tttgccattt accaatttac tgtaaaccgc ttcgacatcg aagccggcac ccggtatgac
     2221 taccggtttt tcgagagcta ttatcggcct gccggaagtt cggtggtaga agtacaaacg
     2281 cgaaacttca acaacatcag tggttcagtg ggtgtgttgt accggctgtc tcctgaaatg
     2341 cggctgcggg ccaatgtggc cagcgcctgg cgcccgccag cgcccaatga actctatgcc
     2401 aatggtgtac accagggcct ggctgccgta gaaatcggca atccggattt taaagcggaa
     2461 cgggcgctca atatgaatat tgagtggcag tacaatcacg attcatcctt ttctgcaacg
     2521 gttacgttgt accacaaccg gatcagcgac tttatttacc tggcacccac gccgcctgcc
     2581 atcctcacca tcaggggata ctatcctgta tttacctacc ggcaaaccga tgccagtttc
     2641 accggcgccg acctgcaaac catttcccgg tggggtcgcc tggcgtggac cgccaaggcc
     2701 agcctgctct ttgcccgcga tctgaaagct gacgactggc tcattttcat gccgcccaac
     2761 cggttggaaa acagtattga ctggtcattc agacctgccc acagcaacag ccgctattat
     2821 caaacttatg ccggggccaa ctggctttgg gtatccgaac aaacgcggat acccgatgct
     2881 gatgtagccg cagattatgc tccgccacca gccgcctatc atctcttcgg actggaagcg
     2941 ggtaccactc atcgctcttc gggcatcgaa cttggcctca acattaccaa cttgtttaat
     3001 gccagctacc gcgattatct caaccgcctt cgctattttt cggatgctgc tggcatcaac
     3061 gtacaattgc gggcaagaat tccattccat tttcacaaac attcctgacg tcttaatcat
     3121 ttaattgaca catgatgacc atgctacgtt cttcgctcat tcgttttgga taccttctgg
     3181 catccaccat cctgctggcc gcttgcaaca aaaacagcag caatcctgcg gaagacactg
     3241 accatgcggc ggtgaccacg gcgatcctgc agtttaaaca gggtggggta gtcaagtttg
     3301 aatatggctt tgatgatccc gatggaatag gaggcaatgc gcccacccgg tttgacaaaa
     3361 ttgtattgga caaaggccag acctatacag tggacctggt actgcaaaac aaaaccggcg
     3421 gtagcaccaa ggacatgaca gccagtatcc gcagtgccgg caagtaccac gaattcttct
     3481 acctgccgca gggcttcagt atgaatatca ccaaggatga caaggatgaa ctgggttttc
     3541 cattgggctt gcagtcaacc tgggtaagtt ccgcagcgcc tgccagcggc gtactgcgct
     3601 tcaccttgca gcacctgctg gttaaaaaac cagtgaacca gcctacagac gggcacagcg
     3661 atatcgccat tgatttcccg attgaaataa aataatcgcc gggtcaattt gatttttgca
     3721 acattgttgt tatatattcg catcattgtt tcaaaaaact atacctatga agaaaattgt
     3781 aatgatgatt tgcctggtag caggtgtagc atctgtggct caggcccaag cccgattcgg
     3841 tgtaaaagcc ggttatacca attcaacctg gagcggcgat ctgattgacg ctgatgagaa
     3901 aaaatcaaac aacggtttcc atgcaggcct cgtggctgag tggggactga agaacaactt
     3961 ctatttccag cctcatctga tgtttgttcg caaag
//
LOCUS       DATIQF010000741         2857 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_254906,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000741 DATIQF010000000
VERSION     DATIQF010000741.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2857)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2857
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254906"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(169..2418)
                     /locus_tag="VLL95_12745"
     CDS             complement(169..2418)
                     /locus_tag="VLL95_12745"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HSR39774.1"
                     /translation="MKRIFIGEKCIVIAGILLLNSLAVLAQRKTPAQRADSLLRLMTL
                     EEKVGQLNQLSSDFATGPITPDGDKQGQVRRGEVGSLLNLMGVARTRQLQEMAMQTRL
                     KIPLLFGQDVIHGYRTTFPIPLAEAASWDLKAIEQSARIAATESAAAGIHWLFAPMVD
                     ISRDPRWGRVMEGAGEDPYLGAQIAAARVKGLQGKGIGHTDAVMACVKHFAAYGAATG
                     GRDYNSVDLSERMLWETYLPPFKAALDAGAATFMNSFNDLNGVPATGNAYLQREILKG
                     KWKFSGFVVSDWGSIGEMVEHGYSKDLKQAAAQAITAGNDMDMESRAYKQHLAQLVKE
                     GKVPMAQVDDAVRRILIKKFELGLFEDPFRFSNEQREKEQYDNAAHKAFARSMAAKSM
                     VLLKNDTINSRPLLPLNRNQKIALIGPLVKSQKDNLGFWSFDFEDDSVRLVSLYQGIA
                     NKLGGLSSLLYAKGCDIADADTSGFGEAVSVAAQADVVVMQVGEARDWSGEAKSKSNI
                     QLPAHQEALIKAVMRTGKPVVVLISAGRPLIFNWTADNVPAILYSWWLGIEAGNSMAD
                     VLFGDYNPSGKLPMSFPRTEGQIPIYYNHYNTGRPAANDDQRFYVSAYIDLPNSPKYP
                     FGYGLSYSAFEYGAMQLSKTKLKGDEKLTVTVSVTNRSNRAGEEVVQLYLRDLSGSVV
                     RPVKELKHFAKLMIPPGVTRQVRFTVTTADLKFYNSRLEHVWEAGEFDIMVGSSSKQL
                     QTKRVEWSK"
     gene            complement(2469..>2857)
                     /locus_tag="VLL95_12750"
     CDS             complement(2469..>2857)
                     /locus_tag="VLL95_12750"
                     /inference="COORDINATES: protein motif:HMM:NF015000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase family
                     protein"
                     /protein_id="HSR39775.1"
                     /translation="LVLEIKPTGQGKERAVKMVDAVVKLVKELKAEPWIVYISFDYNM
                     MLRLKQLAPQAPMQYLEGDKSPEELKKDGIMGIDYHYSVFEKNPDWIRNARQLGMALN
                     AWTVNDADKMDWLLEQGFDFITTNEP"
BASE COUNT          660 a          823 c          622 g          752 t
ORIGIN      
        1 agcaagcgat aaggcaacgt atcggtgccg caatacaagt acttcttttc atacacagcc
       61 gattgctgcg cagccaaaag cgccaccatg ctgatacaac caatcaataa gagcaacctc
      121 tttttcatgc cattatattt attcgtttcc atgcatcgat ttcaattatc atttgctcca
      181 ttccaccctt ttcgtttgca actgtttcga actgctcccc accatgatgt cgaattcacc
      241 cgcttcccaa acatgttcca accggctgtt gtaaaacttg agatcagcag tagtaacggt
      301 gaaacgcacc tgccgggtta cgccgggggg tatcatcagt tttgcaaaat gcttcagttc
      361 tttcacgggg cgcaccaccg aaccactcaa atcgcggagg tacaactgca ccacttcttc
      421 gccagccctg ttgctcctgt tggtgacaga taccgttacc gtgagttttt catcaccctt
      481 caattttgtt ttcgacaact gcatagcacc atattcaaac gctgaatagg acaggccata
      541 gccaaaagga tatttcggac tattgggcaa gtcgatataa gccgacacat aaaaccgctg
      601 gtcatcgttg gctgccgggc gaccggtgtt gtaatgattg taatagatgg ggatctgtcc
      661 ttctgtcctg ggaaagctca ttggtaattt tccggaagga ttgtaatcgc caaacaacac
      721 atcagccatg gaattgcctg cttcaatgcc cagccaccag ctgtaaagaa tggcaggcac
      781 gttgtctgct gtccagttga aaatgagcgg acgtcctgca ctgatgagta ccaccacagg
      841 tttgccggtg cgcatcaccg ctttgatcaa tgcttcctgg tgggcaggca attgaatatt
      901 cgatttgctt ttggcctcgc cactccagtc gcgggcctcg cccacctgca ttaccaccac
      961 atcagcctgc gcagccaccg acacggcctc accaaaacca ctcgtgtccg catcagcaat
     1021 atcacatccc ttggcataca gcaaggacga tagaccgccg agtttatttg cgatgccctg
     1081 gtaaagcgaa accaaccgaa cgctgtcatc ctcaaaatca aaagaccaga aaccaaggtt
     1141 atccttctgc gatttcacca acggcccgat caatgcaatt ttctggtttc gattcaaagg
     1201 aagcaacggc ctgctgttga tagtatcatt cttcaacagc accatgcttt ttgcagccat
     1261 gcttcgtgca aacgctttat gcgctgcatt gtcatactgc tctttctccc gttgctcatt
     1321 cgaaaacctg aaaggatctt caaacaagcc caactcaaat ttcttgatga gaatacgccg
     1381 taccgcgtcg tccacctggg ccatgggtac tttcccttct tttaccaatt gggccaggtg
     1441 ttgtttatag gcccggcttt ccatgtccat gtcattgcca gccgtgatgg cttgtgcggc
     1501 agcctgcttc aggtctttgc tgtagccatg ctccaccatt tcgccaatgc tgccccaatc
     1561 gctgaccaca aatccgctga atttccattt acccttgagt atttctcttt gcaaataggc
     1621 attgcccgtg gcgggcactc cattcaggtc attgaagctg ttcatgaagg tggctgctcc
     1681 tgcatcaagt gccgctttga agggaggcaa ataggtttcc cacaacatgc gttcactcag
     1741 gtcaacactg ttgtagtcgc ggccgcctgt tgcggcgcca taggccgcaa agtgtttcac
     1801 gcaggccatc accgcatcag tatggccaat gcctttgcct tgcaaaccct ttaccctggc
     1861 agccgctatc tgtgcaccga gatagggatc ttcaccggcg ccttccatta ccctgcccca
     1921 gcgtggatca cgactgatat caaccatcgg cgcaaataac cagtgtatac cagcggcggc
     1981 tgattcggtg gcggcaatac gggcagactg ctctattgcc ttcaaatccc agctcgccgc
     2041 ttctgccaag ggtatgggaa aagtggttcg ataaccatgt atcacatcct gcccaaagag
     2101 caacggaatt ttcaaccttg tctgcatcgc catctcctgc agttgccggg tgcgtgccac
     2161 gcccatcagg ttcagcaggc tgcctacctc gccccgccgc acctggccct gtttatcgcc
     2221 atcgggtgtg atgggcccgg tggcaaaatc actgctcagt tgattcaact ggcccacctt
     2281 ttcttccagt gtcatcaggc gaagcaagga atcagcccgc tgtgcaggcg ttttgcgttg
     2341 cgccaaaaca gccaggctgt tgagaagcaa aatgcctgcg atgacaatgc atttctcacc
     2401 aatgaaaatt cttttcaatg cgatgcagtt ttttatttac ctctttcctt cagttttttc
     2461 aacaacagtt acggctcatt ggtggtaatg aaatcaaaac cctgctcgag cagccaatcc
     2521 attttgtcgg catcattcac cgtccatgca ttcaacgcca tgcccaattg cctggcattc
     2581 ctgatccagt ccgggttctt ttcgaaaacg gaatagtgat agtcgattcc catgatgcca
     2641 tccttcttca attcttccgg cgacttgtcg ccttcaaggt actgcatggg agcctgtggt
     2701 gccaactgtt tcaagcgcag catcatgttg tagtcaaaac tgatgtacac gatccatggt
     2761 tcggccttta gttcctttac cagtttcacc acggcatcca ccattttcac agcccgctct
     2821 ttaccctggc cagttggttt gatttccaaa accagcc
//
LOCUS       DATIQF010000742         1600 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_239952,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000742 DATIQF010000000
VERSION     DATIQF010000742.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239952"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..238)
                     /locus_tag="VLL95_12755"
     CDS             complement(<1..238)
                     /locus_tag="VLL95_12755"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HSR39776.1"
                     /translation="MFANREEAAIRLADELQEYAGPDTIVLGIPRGGVPVGFAIAQRL
                     QVPFDLVLTKKIGHPMNPEYAIGAVGLEDSYIIPH"
     gene            complement(249..893)
                     /locus_tag="VLL95_12760"
     CDS             complement(249..893)
                     /locus_tag="VLL95_12760"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta family hydrolase"
                     /protein_id="HSR39777.1"
                     /translation="MHPHEIHLRVGSIQLNGAYCPLPDMHGMIVFAHGSGSSHRSPRN
                     QMVASWLQREGFGTLLFDLLTPEEDTFYENRFNIDLLTQRLIGATRWLHHQTEAHEVP
                     VGYFGASTGAAAAICAAAQTPGIAAVVSRGGRPDLARQALRQLDSPTLLIVGSLDEEV
                     LQLNQMAFDSMHCEKQMAIVEGATHLFEETGKMQEVCRLAAGWLHAHLDHVNAT"
BASE COUNT          392 a          389 c          446 g          373 t
ORIGIN      
        1 cgtgcggaat gatgtagctg tcttcgagcc caactgcccc aatggcatat tctgggttca
       61 tggggtggcc tatctttttg gtcaatacca ggtcgaaggg tacctgcagg cgttgggcaa
      121 tggcgaagcc caccggtacg ccaccgcggg gtatccctaa aacgatggtg tcgggaccgg
      181 catattcctg gagttcatct gccagtctga tggctgcttc ttcccggttg gcgaacatgg
      241 ttttgcgatt aggtggcgtt cacgtgatcg aggtgcgcat gcagccagcc agcagccaac
      301 ctgcatactt cctgcatttt tccggtttct tcaaacaaat gggtggcgcc ttccacaatg
      361 gccatttgtt tttcgcaatg catgctgtcg aaagccattt ggttcagttg cagcacttct
      421 tcatccaggc tgcccactat cagcagggta gggctgtcca attgcctcaa cgcctgcctg
      481 gccaggtcgg gtcgtccgcc ccggcttact acggctgcga tgcccggcgt ttgggcagcg
      541 gcacagatgg ccgcggcggc gccggtgctg gcgccaaaat agcctactgg cacctcatgc
      601 gcttccgttt gatgatggag ccaccgggtg gcgccgatca aacgctgggt aagcaaatcg
      661 atattgaagc ggttttcgta aaaggtatcc tcctctggtg tcagcaaatc gaagagcagg
      721 gtgccaaatc cttcgcgttg caaccaggaa gccaccattt gattgcgggg gctgcggtga
      781 ctgctgccac tgccatgggc aaacacaatc atgccgtgca tatcgggaag cgggcagtag
      841 gcaccgttga gctgaatgct tcccaccctg agatgtattt catggggatg cataacaatt
      901 gttttagggt tcgaaaatag ttcgaatacc agccgtcata cccgacttcc ctcactggaa
      961 cggcatgcta ttggtgctca gaatttacga aaaaaatgcc ggatggcagc catcaaaaat
     1021 cattgcagag gatattgtgt ccatttactt ttgcctcaga tcgatgtggt acaggtcggt
     1081 tggataggag aggcagagat agctgctgta aaaggccgtg aaactgcttc gctgaagcga
     1141 cagaaaaaaa gatgtgagcc aaccaggata gcgaacaccg gtcaagcaaa cgacagagac
     1201 agctgctgca aaaggcagtg aaactgttgc gaacggcgaa ggcgggaact gataattccg
     1261 ccttcgtttt tttttgtgca tcatggcagc agtatggcgc ttttatgagg gcgaatgaaa
     1321 tacagtcgat atgtactcaa aaacacttgc gcaaaggatg cgtttaatca tgtttttgaa
     1381 gattaaggaa acatagttta ggtgtcagaa gatccgactc gggtcagttg gctcggtatc
     1441 ccggaaataa ccgcttcagg agcggcaaca ctgcaggacc gaaagaattg tacactacaa
     1501 gcaaactcgc cagcaaacct gagcgaagta tgttcggatc agttgacgtg ttgcccgtaa
     1561 aggcaacaat atcgttggca acaaggaata aaggcggcat
//
LOCUS       DATIQF010000743         4068 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_41979, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000743 DATIQF010000000
VERSION     DATIQF010000743.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4068
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41979"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..471)
                     /locus_tag="VLL95_12765"
     CDS             complement(<1..471)
                     /locus_tag="VLL95_12765"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HSR39778.1"
                     /translation="MNLSYEHSVTCIPDNNATTPCDPRVVDAMVPYFTSHFGNAASRN
                     HPFGWAAEEAVDYAREQVAQLIGADPKEIIFTSGATEGDNLAIKGVFEMYASKGNHII
                     TMNIEHKAVLDTCKHLEKQGAEVTYLEVKPDGRIDLAELEAAIRPTTILIAIMYA"
     gene            647..1057
                     /gene="mce"
                     /locus_tag="VLL95_12770"
     CDS             647..1057
                     /gene="mce"
                     /locus_tag="VLL95_12770"
                     /EC_number="5.1.99.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR03081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA epimerase"
                     /protein_id="HSR39779.1"
                     /translation="MNKIEHIGIAVSSLQEAIPLFEALLNTPCYKTEEVESEKVKTAF
                     FQNGPNKIELLESTDPEGVIAKYIAKKGEGLHHIAFDVTDIHAEMERLKAAGFVLLNE
                     QPKQGADNKLVCFLHPKGTRGVLVELCQERKAEE"
     gene            complement(1124..1834)
                     /gene="rnc"
                     /locus_tag="VLL95_12775"
     CDS             complement(1124..1834)
                     /gene="rnc"
                     /locus_tag="VLL95_12775"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR02191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HSR39780.1"
                     /translation="MSWSLPFFEKNKARENFRKSLQNVLGFKPGKLELYTTALSHRSV
                     KDTAEENNERLEYLGDAILSAVVADYLFMRYPKKGEGFLTEMRSKMVNRQMLNDIAVK
                     MGVKKITQFNKIDSSLKNSQIFGNTLEALVGAIYLDKGYKATLKWVTKRIILPHLLLD
                     DLEAQDINIKNQLIGWANKQNRAIDFETLEEKQERGRRLFIVGVKLDGEVIAAGRGFN
                     KKDASQMAALQAVEKLGL"
     gene            complement(1895..3148)
                     /gene="fabF"
                     /locus_tag="VLL95_12780"
     CDS             complement(1895..3148)
                     /gene="fabF"
                     /locus_tag="VLL95_12780"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: protein motif:HMM:NF005589.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HSR39781.1"
                     /translation="MSHKRVVVTGIGALSALGNTVNDMWTNMVNGVSGAGPITLFDAS
                     KFKTRFACELKNFDPQDYLDRKEARKIDRYCQLALVVSDQAMAQSGINKDNINVDRAG
                     VIFASGIGGLITFQEEVINFAKGDGTPRFNPFFIPKMILDIAAGQISMRHGLRGPNFA
                     VTSACASSTNAIGVAMDLIRAGKADVILAGGSEAVISEAGVGGFNAMKALSERNDSPE
                     TASRPYDKDRDGFVMGEGAGALVLESLDHALARGANIICELAGSGASADAHHITAPHP
                     EGLGAKHVMLAALADAGMQASDIDYINTHGTSTPLGDGAEVKAIQDVFGSHAYKLNIS
                     STKSMTGHCLGAAGVIEAIACIQAVLHDIIPPTINHFTDDPELDPQLNFTFNKAQQRQ
                     VNAALSNTFGFGGHNACVIVKKYMA"
     gene            complement(3239..3475)
                     /locus_tag="VLL95_12785"
     CDS             complement(3239..3475)
                     /locus_tag="VLL95_12785"
                     /inference="COORDINATES: protein motif:HMM:NF002148.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HSR39782.1"
                     /translation="MSDIATRVKKIIVDKLGVDEAEVTNEASFTNDLGADSLDTVELI
                     MEFEKEFNISIPDEQAETITTVGQAVTYLEEHAK"
     gene            3802..>4068
                     /locus_tag="VLL95_12790"
     CDS             3802..>4068
                     /locus_tag="VLL95_12790"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HSR39783.1"
                     /translation="MKAIIPVAGAGTKLRPHTYTQPKALIPIAGKTILSFIVDQLQEA
                     GITEYIFIVGYLGEKIQDYVHNAYPHLTTHFVYQNERHGTGHAIR"
BASE COUNT         1008 a         1010 c          992 g         1058 t
ORIGIN      
        1 ggcatacatg atggcaatga ggatagttgt gggcctgata gccgcttcca gttcagccag
       61 gtcaatgcga ccgtcgggct tcacttcgag gtaggtaact tcagcaccct gcttttcgag
      121 gtgcttgcag gtatcgagca cggccttgtg ctcaatgttc atggtgatga tgtgattgcc
      181 tttgctggca tacatctcaa acacgccttt gatggccagg ttgtcgcctt cggtagcgcc
      241 gctggtgaaa atgatctctt tgggatcggc accaatcaac tgggccactt gctcacgggc
      301 ataatcaaca gcctcttcag ctgcccagcc aaaggggtgg ttgcggctgg cggcgttgcc
      361 aaaatggctg gtaaaatagg gaaccatcgc gtctaccacc cttgggtcgc agggcgtggt
      421 agcgttgttg tcaggtatac aggtaactga atgctcatat gataaattca actttttttc
      481 aggaatgttg cgggaagtca tgtgttgcct cagcacatta tcccaatttt gaacaacaca
      541 aatgtagacg cttttgttgc cctcaggaat ggagaaaccg gcttcgaagc cctttttccc
      601 caaatcgtaa ggtcaaaaac ggtgtttaac aattttccaa agtcaaatga acaagataga
      661 acacattggg atagccgttt cctccctgca ggaggctatt cccctgtttg aagcattgct
      721 gaataccccc tgttacaaaa cggaagaggt ggaaagcgaa aaagttaaaa cggcgttttt
      781 tcaaaatggt cccaacaaaa tagagttgct ggaaagcacg gacccggaag gggtgattgc
      841 caaatacatt gccaaaaagg gggaaggcct gcaccatatt gccttcgatg tcaccgatat
      901 ccacgccgaa atggagcgat tgaaagccgc aggctttgtg ctgctgaacg aacaacccaa
      961 gcagggcgcc gataataaac tggtatgctt cctgcacccg aaaggaacaa ggggggtgtt
     1021 ggtggaactg tgccaggaaa gaaaggcgga agaatgatga atagggaatg atgaattagg
     1081 aatggggaat taggagtagt atctgttttt cccgactacc tgattacaaa ccgagttttt
     1141 ccacggcctg cagcgcagcc atctggctgg cgtctttttt gttgaaacca cggccggcgg
     1201 ctattacttc gccatccaac ttcaccccaa ctatgaacag gcgccgtccc cgttcctgtt
     1261 tttcttctag ggtttcaaag tcgatggccc gattttgctt gttggcccag ccaatcagct
     1321 ggtttttgat attgatatcc tgcgcctcca aatcgtcgag cagcaggtgc ggcaaaatga
     1381 tccgtttggt cacccatttc agcgtggcct tgtatccctt gtcgaggtaa atagccccca
     1441 ccaaggcttc cagcgtattg ccgaatattt ggctgttttt gagggaggaa tcaattttgt
     1501 tgaactgggt gatcttcttc acccccattt tcacggcaat gtcgttcagc atctggcggt
     1561 tcaccatttt gctgcgcatt tccgtcagga agccttctcc ctttttgggg taacgcatga
     1621 acaggtaatc ggctaccaca gcgctgagga tggcatcacc caaatactcc aggcgttcat
     1681 tgttttcttc ggcggtatct tttacggatc gatgactgag ggccgtcgtg tataactcca
     1741 gtttgcctgg cttaaaaccg agcacatttt gcaatgactt acggaaattc tcccgtgcct
     1801 tgtttttctc aaaaaatggt aaggaccaac tcacacaata cgctatcgtt agtttcggct
     1861 tctaagaacg gaaaatactt ccattccggt tcgatcaggc catatacttc ttcacaatca
     1921 cgcaagcatt gtgcccacca aaaccaaaag tattgctgag agcagcattt acctggcgtt
     1981 gctgagcctt gttgaatgtg aagttcagtt ggggatccag ttcaggatcg tcggtgaagt
     2041 ggttgatggt gggaggtata atatcgtgga gcacggcttg tatacaggcg atggcttcaa
     2101 taacgccggc agcacccagg caatgacctg tcattgattt ggtgctgctg atgttgagct
     2161 tgtaagcgtg actgccaaat acatcctgta tggcttttac ttcggctcca tcgcccaacg
     2221 gcgtggaagt accatgcgtg ttgatgtaat caatgtcgga ggcctgcatg cctgcatcgg
     2281 ccagggcagc caacattaca tgcttggcgc ccagtccttc aggatgggga gccgtgatgt
     2341 ggtgcgcatc ggcactggca ccactgccag ccagttcgca aatgatattg gcaccacgag
     2401 ccagggcgtg atccaggctt tcgagcacca gcgcaccggc gccttcgccc atcacaaaac
     2461 catcgcggtc tttgtcgtaa ggacggctgg ctgtttcggg gctgtcgttt ctttcgctca
     2521 gtgccttcat ggcattaaat ccacccacac ccgcttcaga tataacggct tcagaaccac
     2581 cggccaggat cacatctgct tttcctgcac ggatcaggtc catggccacg ccaatagcgt
     2641 tggtactgct ggcgcaggcg ctggtcaccg cgaagttggg tccccgcaat ccatggcgca
     2701 tgctgatttg accggcagcg atgtcgagga tcattttggg aatgaagaag ggattgaagc
     2761 gaggggtacc atcgcccttg gcaaaattta tcacttcttc ctggaaggtg atgagaccac
     2821 cgataccact ggcaaaaatg acaccagcac gatctacgtt gatgttgtct ttgttgattc
     2881 cagactgcgc catggcctga tcgcttacca ccaatgccaa ttggcaatag cggtcaatct
     2941 tccgggcttc cttacggtca aggtagtcct ggggatcaaa atttttcagc tcacaagcga
     3001 agcgtgtctt gaatttggat gcatcgaata atgtaatcgg accagctcca ctcacaccat
     3061 tgaccatatt ggtccacatg tcgtttactg tgttgccaag cgcactaagc gctccaatgc
     3121 cggttactac tactcttttg tgactcatac aaaggcaatt ctacataaaa aataaggaac
     3181 acacccttgt ggctgatgcc taaccaggta tgttcccaat aaggtcaaag aaataatctt
     3241 acttagcgtg ctcttccaga taggtaacag cctgtcctac agtagtaatt gtttctgcct
     3301 gctcgtcggg gatggaaata ttgaattctt tttcaaattc catgatgagc tctacagtgt
     3361 ccaaagaatc ggcaccgaga tcgttggtga aggaagcttc gttggttact tcagcttcgt
     3421 caacgccaag cttgtcgaca attattttct ttactcgagt tgcgatgtcg ctcatggtat
     3481 gaggttttta gtaccgcgca aaaatagagt ttttgcgaaa ctgacaaaga ttgccttgtt
     3541 ttttgtgggt aagtggcaat aatggctatc taaatgtgac tgactgcaca acctaccgtt
     3601 gttgcaacac ttcattagaa ttcacgtcat atgttgcatc cgtcaaatcc tctattttcg
     3661 caaccccggt aaaatttcct ccgtttgctg aacacacctt cctaccgata gcaccacttc
     3721 cgggaaaaaa tgagccttgt cgtgatgggc atcaaagaat cgaaagatgc cgcattcacc
     3781 gctcaataaa caatttacaa ggtgaaagca attatacctg ttgcgggcgc cggcaccaag
     3841 ctgagacccc atacatatac acagcccaaa gcgctgatac ccattgcggg caaaaccatc
     3901 ctcagcttca tagtcgacca gttgcaggaa gccggtatta ccgaatacat atttatagta
     3961 ggctacctgg gagaaaagat ccaggactat gtgcacaatg cctacccgca ccttaccacc
     4021 cattttgtgt accagaatga gcgccatgga acaggtcatg ccattcgc
//
LOCUS       DATIQF010000744         1506 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_300673,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000744 DATIQF010000000
VERSION     DATIQF010000744.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300673"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..345
                     /locus_tag="VLL95_12795"
     CDS             <1..345
                     /locus_tag="VLL95_12795"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSR39784.1"
                     /translation="ISKLQSSPNEGVSVLSRLAAMASLKDQQFVSDYTAKNQAARTYT
                     ISELEKLHFSCVPSQTNFIYFSLAAYPKDYFQQLKDHHIEGTGIYEEDGKWTRITVGT
                     MDEMKTFIKALQ"
     gene            582..1112
                     /locus_tag="VLL95_12800"
     CDS             582..1112
                     /locus_tag="VLL95_12800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39785.1"
                     /translation="MKKIIMAFAACWLCLFISCDKDIPIQPTAKPKQQTLTDNLENNQ
                     VVSLTYSTGRTTLCPMSRFTLVTYAGTGESLLNIVSCYQINILNPDGPGNYSFGTNNT
                     PGTRTATMIATPAEFAILPYDPGTITIESIDTHLVKGSIDARLYNTSEAIWEGVDTIF
                     LRISGNFEAKLHRVAR"
     gene            1247..>1506
                     /locus_tag="VLL95_12805"
     CDS             1247..>1506
                     /locus_tag="VLL95_12805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HSR39786.1"
                     /translation="MQPAIRQYNEQLAESEKKICDLLADIIDQELAASVSKVWHGHPV
                     WFIEDNPIVGYSKQKKGIKLMFWSGADFEEDKLNIRGEKFKDA"
BASE COUNT          455 a          361 c          325 g          365 t
ORIGIN      
        1 ataagcaaac tgcagtcgtc gcccaacgaa ggcgtaagcg tgttatcgcg gctggcagca
       61 atggcttcct tgaaagacca acaatttgtt tcggactaca cagccaaaaa ccaagctgcc
      121 agaacctaca ccattagtga actggaaaag ttgcatttca gctgcgtccc ttcgcagacc
      181 aacttcattt atttttcgct ggccgcctac ccaaaagatt atttccagca attgaaagac
      241 catcatattg aaggcaccgg catttatgaa gaagatggca aatggacgag gatcacagtg
      301 ggaacaatgg atgaaatgaa aacgtttata aaggccctgc aataaacagg ttgcaaccat
      361 ttgccgttaa taaatacagt atgtgggagc cttatttagg gttgccattt ctcttcgctt
      421 ttgtaaggct gggaatgggg gttgttctta ggaaagccac ccctgttttg tacctttgta
      481 ttaacaaaag atccttgaca atgtaacagc tattgccctt gcatgaatga attctgaaac
      541 cccaaaaccc tactcaaaaa acgaattcaa aatcatgctt tatgaaaaag ataatcatgg
      601 cctttgccgc atgctggctg tgtttattca tttcctgtga caaggatatt cccatacagc
      661 caactgcaaa accaaagcag caaacactga ccgataacct cgaaaacaac caggtggtga
      721 gccttaccta tagcacgggg cgaactacat tatgtcctat gtccaggttc acgctggtta
      781 cttacgccgg cacaggcgaa tcgcttctga acatcgtcag ttgctaccaa atcaatatcc
      841 tgaacccgga tggaccgggc aactattcat ttggcaccaa caacactccc ggaacacgaa
      901 ccgccaccat gatcgccaca cctgccgagt tcgcgatact gccctacgat cctggcacta
      961 tcaccattga atcaatagac acccatcttg taaaaggatc cattgatgcc aggctgtata
     1021 acacatcaga ggcgatttgg gaaggagtgg atacgatttt cctgcgcatc agcggcaatt
     1081 ttgaagccaa acttcacagg gtggcaaggt gatgaatgat tctcaaggta gcgttgtcgc
     1141 tttctagttt gcaatagaaa cccgaattag ttgcccatat cgcaaacaag gctcctgtgg
     1201 gcagtttttc tcttgacagc atggtatcat ttatgatatt tggatcatgc aacctgccat
     1261 cagacaatac aacgaacaat tggctgagtc cgaaaaaaaa atctgtgatc tactcgccga
     1321 cataattgac caggaattag ccgcctcagt gagcaaagta tggcacggcc acccggtatg
     1381 gttcattgaa gacaacccca tcgtgggcta tagcaaacaa aaaaagggca tcaaactcat
     1441 gttctggagc ggcgctgatt ttgaggaaga taaactgaac atccggggcg aaaaattcaa
     1501 ggatgc
//
LOCUS       DATIQF010000745         3525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_178947,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000745 DATIQF010000000
VERSION     DATIQF010000745.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3525
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178947"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..538
                     /locus_tag="VLL95_12810"
     CDS             <1..538
                     /locus_tag="VLL95_12810"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HSR39787.1"
                     /translation="TNEVMQKVVTDERGNYLVTLPVGNNYSFTVNRQGYLFYSDRFDL
                     SGQPADSTYEKNIALQPIQVNASLELKNILYETNSFKLNPSSFIELDKLVQLLKDNPS
                     IKVQINGHTDNVGKPADNLLLSANRAKSVVEYLISKGIDKTRLTAKGFGATQPVADNG
                     TETGRAKNRRTELLVVGL"
     gene            585..1685
                     /gene="dprA"
                     /locus_tag="VLL95_12815"
     CDS             585..1685
                     /gene="dprA"
                     /locus_tag="VLL95_12815"
                     /inference="COORDINATES: protein motif:HMM:TIGR00732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HSR39788.1"
                     /translation="MPTELEYQIALTLTPQIGCVAAKTLALHFGNASDVFKAKKQTLS
                     KIEGIGEIRAQSIKSFSDFSLCESEAAFITKHEIQPMFLTDAQYPQRLLNCYDSPTLL
                     YYKGSANLNASRIAAVIGTRRNSDYGKHCVAELMTALSAHDVLILSGLAFGIDTLAHR
                     EAVKNKLPTVGVLAHGLQTIYPPENKKLAKQMIEEGGGLLTEFMSGTPPDKHNFPTSN
                     RIVAGMADVTIVVETDIKGGSMITAELANNYNRDVLAYPGKATDDKSRGCNHLIKTNK
                     AALVTSGQDVMEFMNWLPVKEKPKVQRSLFIELSPDEKVIFDLLNGSDGLHIDEINLR
                     SQLTSSSAAAALLTLELQGVVVSLPGKMYKVV"
     gene            1731..3224
                     /gene="guaB"
                     /locus_tag="VLL95_12820"
     CDS             1731..3224
                     /gene="guaB"
                     /locus_tag="VLL95_12820"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: protein motif:HMM:NF012690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HSR39789.1"
                     /translation="MATKKSPLTKSVDKFFGEGLTFDDVLLVPAFSQVLPREVDTRSR
                     LTKSITLNIPIISAAMDTVTEWQLAIALAREGGIGILHKNMSIEQQAEQVRKVKRSES
                     GLIIDPVTLHDDATIADALKLMAENKIGGIPIVNGTNKLVGILTNRDLRFEDNPRKKV
                     KQVMTSENLITAPEGTDLVGARKILSKYKVEKLPVVKKDGTLVGLITYRDIQKVQNYP
                     NAVKDGFGRLLVGAALGITGDMLDRAEALMKIGVDVVTLDSAHGHTRGVMDALKMLKK
                     NFKNLQVIAGNVGTAAGAKALAEAGADCVKVGIGPGSICTTRIVAGAGVPQITAVMEA
                     SNALKAKGIPVIADGGIRYTGDMVKALAAGASTLMMGGVFAGTEESPGDTIIYEGRKF
                     KQYRGMGSIGAMQQGSSDRYFQDVEEGIKKLVPEGIEGRVPYKGYLSEVVHQFTGGLR
                     AGMGYCGASDIKALQEQAQFVRITNAGMKESHAHDIEITREAPNYSR"
BASE COUNT          960 a          910 c          931 g          724 t
ORIGIN      
        1 caccaacgaa gtgatgcaga aggtggtgac cgatgaaaga ggcaactacc tggtaacgct
       61 gcccgtgggc aacaattact ctttcaccgt aaaccgccag ggctatttgt tttacagcga
      121 tcgatttgac ctgagtggtc agccggccga cagcacttat gaaaagaaca ttgcgctcca
      181 acccatacag gtaaacgctt cgctggaact gaagaacatc ttgtatgaga ccaattcttt
      241 caaattgaat ccttcttcgt tcatagaact ggacaaactg gtgcagttgc tgaaagacaa
      301 tccatccatc aaggtgcaga tcaacgggca caccgacaat gtaggcaagc ccgccgacaa
      361 cctgctgctg agcgccaacc gcgccaaaag cgtagtggaa tacctcatca gcaaaggcat
      421 tgacaaaaca aggcttacgg caaaaggctt tggcgccacc cagcctgtgg ccgacaatgg
      481 aaccgaaacc ggccgggcca aaaacagaag aacggaatta ttagtggttg gtttgtagtt
      541 tttcgttttt ggttgttaag ttcaacttgt gaactactaa taagatgccg accgaacttg
      601 aataccagat tgccctcacg ctcacgccgc aaattggatg cgtggctgct aaaacgctgg
      661 cgcttcattt tggaaatgct tccgacgttt tcaaggccaa aaaacagaca ctgtccaaaa
      721 ttgaaggcat tggtgaaata cgggcacaaa gcatcaagtc cttttccgat ttcagccttt
      781 gcgaaagtga agccgccttc atcaccaaac acgagatcca accaatgttt cttactgatg
      841 cgcagtatcc ccagcgactg ctcaactgct acgattcgcc cacgctgctc tattacaaag
      901 gcagcgccaa tctcaatgct tcccgcatcg ccgcggtgat tggcacccgg cgaaatagtg
      961 actatggcaa acactgtgtg gctgaattaa tgactgcact ttcagcgcat gatgtactca
     1021 tcctgagtgg cctcgctttt ggtattgata ccctggcaca ccgcgaagcg gtgaaaaaca
     1081 aactgcctac ggttggcgtg ctggcgcatg gtttgcaaac catttacccg cccgaaaaca
     1141 aaaagctggc gaagcaaatg atagaagaag ggggtggttt gcttaccgaa ttcatgagcg
     1201 gcacaccgcc tgataaacac aattttccaa ccagcaaccg cattgtagcc ggcatggccg
     1261 atgtgaccat tgtagttgaa accgacatca agggcggcag catgatcact gccgaactgg
     1321 ccaacaatta caaccgcgat gtgctggcct accccggcaa agccaccgat gataagagcc
     1381 gcggatgcaa tcatctcatc aaaacgaata aggcggcact ggtgacgagc ggccaggatg
     1441 tgatggaatt catgaactgg ctgccggtga aagaaaagcc caaagtgcag cgaagtttgt
     1501 tcattgaact gagccctgat gaaaaggtga tttttgattt gctcaatggc agcgatggcc
     1561 tgcacatcga cgagatcaac ctgcgtagtc agctgacatc ttcctccgcc gcggcggccc
     1621 tgctcacgct ggaactgcag ggggtggtgg tgagtttgcc ggggaaaatg tataaagtgg
     1681 tgtgatggcc accatttgga ccgaatatat ccatccccct acctttgccc atggcaacaa
     1741 aaaaatctcc ccttaccaag tcggtcgata agttttttgg cgaaggactc accttcgacg
     1801 atgtattatt agtgcctgcc ttcagccagg tactgccccg tgaagtggac acacgcagcc
     1861 gcctcacgaa aagtattacc ctcaatattc ccatcatcag tgccgctatg gacaccgtta
     1921 ccgagtggca gctggccatt gcgctggccc gcgaaggcgg catcggcatc ctgcacaaaa
     1981 acatgagcat tgagcagcag gccgaacagg tgcgcaaggt gaaacgcagc gaaagcggtc
     2041 tcatcattga ccccgttacc ctgcacgacg atgccaccat agccgatgcg ctgaaactga
     2101 tggcggaaaa caagattggc ggtattccca ttgtgaatgg aaccaacaaa ctggtaggca
     2161 tccttaccaa ccgcgacctg cgcttcgaag acaatccccg caaaaaagtg aagcaggtga
     2221 tgacgagtga aaacctcatc accgcccccg aaggcaccga cctcgtgggc gcccgcaaga
     2281 tcctgagcaa gtacaaagtg gagaaactgc ccgtagtgaa gaaggacggg accctggtgg
     2341 gcctcatcac ctaccgcgat attcagaaag tgcagaacta ccccaatgcg gtgaaagatg
     2401 gcttcggccg cctgctggta ggcgcagcgc tgggcatcac aggcgatatg ctcgacaggg
     2461 ccgaagcact catgaaaatt ggtgtggacg tggtgaccct cgacagcgcc catggacaca
     2521 cccggggtgt gatggatgcg ttgaaaatgc tcaagaagaa tttcaagaac ctgcaggtaa
     2581 tagccggcaa cgtgggcacg gccgctggtg ccaaagcttt ggcagaagcc ggggccgact
     2641 gcgtgaaagt aggcatcggc ccgggcagta tttgcaccac ccgtattgtt gccggtgccg
     2701 gtgtaccgca gatcacagcg gtgatggaag ccagcaatgc cctgaaagca aaaggcattc
     2761 cggtgattgc agacggtggc atccgctata ccggcgacat ggtgaaggca ttggcagcag
     2821 gtgccagcac cttgatgatg ggtggcgtat ttgccggcac tgaggaaagt cccggtgata
     2881 ctattattta cgaaggccgc aaattcaagc aataccgcgg catgggcagc attggcgcca
     2941 tgcagcaggg cagcagcgac cgctacttcc aggatgtgga agaaggcatc aaaaagctgg
     3001 tacccgaagg cattgaaggc cgggtgccct acaaaggcta cctgagcgaa gtggtgcacc
     3061 agtttaccgg cggcctgcgg gcaggcatgg gctactgcgg cgcatcagat atcaaagcgc
     3121 tccaggagca ggcccagttt gtgcgcatta ccaatgccgg catgaaagaa agccatgcac
     3181 acgacattga gatcacaagg gaggcaccga actatagccg ataagaaagt tggtggtttg
     3241 gtgtttttcg ctggtggttt atcaaggtgg ggccctgtgc aaaatggcaa gcatcgatga
     3301 gggcagaaat catcccatac atgctcgtct atcaactgag attattcaat cctgcaacca
     3361 tggttgcagg attttctttt gcattacgta ggcgggcaaa tgactaaaat cagcaggcga
     3421 ggaaactttt accatcacat ttggtttagt aaatcgatct ttcacgccga aaaaagaaac
     3481 aaatgaaaat actattggta tcagctaccc aacttgaaat acagg
//
LOCUS       DATIQF010000746         7056 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_148789,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000746 DATIQF010000000
VERSION     DATIQF010000746.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7056
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148789"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..252
                     /locus_tag="VLL95_12825"
     CDS             <1..252
                     /locus_tag="VLL95_12825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39790.1"
                     /translation="GSQLQIKQLDASVYGAAYTELFKNLEMARYQFLNDVPLLQVIDE
                     ARYPMKRIKPGRLKTGIIVAFIFGFSAILILGIAYNRRN"
     gene            481..1572
                     /locus_tag="VLL95_12830"
     CDS             481..1572
                     /locus_tag="VLL95_12830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39791.1"
                     /translation="MSHIYLVVGLLLIGALSIITKWDLTLLGNSVFKWLQFAFSAIVC
                     VVSAAVFMHAGKDVAGRLLGFFLIFIVVGCLFERLGLIRPLTEAFRLVYSETKGGGDI
                     DADRELELAGFARPYFFTAEPSLVGLGYFSIACCFSFLNRRLLYDILLLIGVVLMLSL
                     LGSPTVLLTIFPVGIFMLVKYRISGRKILAILLLIIIPTVILLRFPPVFEAAERVITR
                     VATETMVENSSMYGRVYVPYFITLPKVLPVYPLFGVGLGNFGYVNLLFGYNADYYELD
                     SLFIHGSNGFVTMIVYLGIAGTLLVYLLIRWFHKSLSIPYWWMTVFFMVVSGQITGSV
                     STPRFWAFTGIAIACLQVGSKRIEKHDAN"
     gene            1559..2569
                     /locus_tag="VLL95_12835"
     CDS             1559..2569
                     /locus_tag="VLL95_12835"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSR39792.1"
                     /translation="MMPTEVSVIIVAYRSSDLVNNCIASVIQFTKSVSIEIIVVDNAA
                     GTNEAFNLQADCGSVPVSIIKMPYNAGFARANNQAFKVARGQALLLLNPDTELVSDAI
                     GICFHALMSGSAVACGTQLIFADGTFQMSGWHFTTGNLGFFLKLPYLKKLYDKIRRRP
                     AQLKVEGNEPREVDWINGAFLMVKASVVERCGGLDEEFFLYAEEPELCARIGRAGKLV
                     VYPFARVVHHVGGVTSQAFESDAQGYFYIFDKRGLQMMVSELLRTRKQHGIGWLLFHY
                     VIFFLYIPVFWMLNAVDFIWNRRAAAYGRKELWGYTRNTWKAGYYVWRILQGKPFFYK
                     VL"
     gene            2576..3853
                     /locus_tag="VLL95_12840"
     CDS             2576..3853
                     /locus_tag="VLL95_12840"
                     /inference="COORDINATES: protein motif:HMM:NF014051.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HSR39793.1"
                     /translation="MNPLTVIRKNAGWYGLNIFVTGSSAFVGIILSKQLLSPEDFLQF
                     NLLANGVTLLNNFLIGWFVQSIIRFYHSYHLFFRIRNILLITAANFLVISIPVFFLWR
                     SFIGIGEPVIQPIVFMFINALYTILLALYQATHQAKTVAASETLRSSIIIIGLLAPFL
                     STVSIGASYFWILWIVSCLLPALFLFVRRKKLYQSRELKEGTAPAIAMHNSRTAIKNV
                     LQFGLPLSGWMFVSFLLLNSDKWYLYKCGLPPQMVANYVALSDIMMRGVGFLFSPIVT
                     STYPVISKMFDDGRYSEVQFVMKRVVTWELLLSTAAVAGFVISHRLIFALLRINDSPK
                     MFLWIGLLLIVVHTLWQISAMFHKIGELRLKTAQLLLALLLATALVYIAFYKLVVPAS
                     LPGVMAVFSSGFVVYFIYSFLLFKTFKWNKIDE"
     gene            3846..4688
                     /locus_tag="VLL95_12845"
     CDS             3846..4688
                     /locus_tag="VLL95_12845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39794.1"
                     /translation="MNNFDLAIALRVYPQISKQPLGNFETKFDLFKVGLKSLLASLGP
                     IRAKFFVILDSCDDSYAAFVSGLVPSHSLQIERVDNAGNAKTFLMQMQWLQNQTNAEM
                     VFLAEDDYLYQPGMFGRMMDLIKQCGDNVHFVSPHNHWHYYSNSIHREAGTRLLFENG
                     ENWHMPVSTCLTFLTTKKILIETSGVFATYAKGNFDFSIFVSLVRPSIFRFPPAKLLA
                     NSFFLKSLLKAIRHTAGQVYFGRPYVLAVPLVPVATHMQIDELGPGVNWAGLVENFKN
                     ELSL"
     gene            4722..5387
                     /locus_tag="VLL95_12850"
     CDS             4722..5387
                     /locus_tag="VLL95_12850"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HSR39795.1"
                     /translation="MNYTDKSENYFGNARHDLLRILPNNPDARLLEIGAAGGYTLLAA
                     KALGKCGYCAGIELFSLPGRAQQDPRIDAFYVGNIEKDTFPFESEMFDVILFPDVLEH
                     LVDPWAVLQQCTAWLKPGGICIISVPNFQFFKIVFQVFIGGNFAYAKDGIMDRTHLRF
                     FCKPNVMSLANTHPLELSRIYSSFDLQNQWKLKWMNRLTLGLLRRYLTIQFITLSVKA
                     NVG"
     gene            5377..6612
                     /locus_tag="VLL95_12855"
     CDS             5377..6612
                     /locus_tag="VLL95_12855"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR39796.1"
                     /translation="MSDDAHIINATVWILAPHFRHPAISGGDVYILGVATGLSYKYAR
                     VELVGADAQHSIRLGRITAATTVGSQMRSKWLASVRTLLFRSSYQRERFVTKKYLAVV
                     KRLVIHNGDLVFVSFIASHSVLQCMDVPSCERFILTHNFDPDYFDLMANSTRNPVARL
                     VFRMSADYSLRQLKEMDGNVQLVHINEHDLSKYAGIANNVRHHLFEAGVLYDERRLNN
                     FAQARKKDLAGMNAPVLGFVGSLWATQNVAGLMHFAEAYWPVIRATFPDVQLRVIGSS
                     PGLVVKDLCQRNGWQLFPDLIQEDFDEAVAGCHFSILPFELSAGTKIKILSSLQCLVP
                     VIGTRCSQPTGFHLPPTSLFSDDVADWVHHISAYISQVTQEESAGGLKAMLQAQSWQN
                     KATSLVKTIHPSIQGKLNT"
     gene            6614..>7056
                     /locus_tag="VLL95_12860"
     CDS             6614..>7056
                     /locus_tag="VLL95_12860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39797.1"
                     /translation="MNKPDQSVVLLMTRIPFPPVGGDRVKSYHMVKLLHARFHLRIVI
                     VSDEKASPEQIKFLEDHCETFKLFCFSPFRCRLNLVKVFWKHSMPLQVAYYQFGKVSR
                     FLESFIHKDDIVISTLIRSAEYARSFPNHKVLDIVDSIYLNYKRS"
BASE COUNT         1709 a         1454 c         1761 g         2132 t
ORIGIN      
        1 ggttcccagt tacaaatcaa acaattggat gcttcggtgt atggtgccgc gtacactgag
       61 ttgtttaaga atcttgaaat ggccaggtac cagttcctga atgatgtgcc attgctccag
      121 gtcattgatg aggcacggta ccctatgaaa aggataaagc ccgggcgcct caaaaccggt
      181 attatcgttg ccttcatttt tggtttttct gcaatcctca tactgggcat agcctacaat
      241 aggcgtaatt gaataccgcg aatgacgcca gagaatgtaa taccgaagcg ccatccgctg
      301 acattggtca gaggatacat gctcagtcag ccgttgttgc tgacggtgtt tcttttcgtt
      361 tggttgttta ttatttactc cgaattgcca ttgccggttg caccgggtat cagtcttcct
      421 tgcatgtacc tgttgtttat gattccattt gtctggccgg tgttaatgaa gtcagtgagg
      481 atgagtcaca tatacctggt ggtaggtttg ctgctcattg gcgctctaag tattattacc
      541 aaatgggatt tgacattgct ggggaatagc gtcttcaaat ggctacagtt tgcattctca
      601 gccattgttt gtgttgtttc agcggcagtg ttcatgcatg cgggcaagga tgtggcaggc
      661 aggttgctcg gattctttct catttttata gtagtgggat gtctcttcga gagacttggc
      721 cttatcaggc cgcttacgga ggccttcagg ttggtataca gcgaaacaaa gggaggcgga
      781 gatatagacg ccgaccggga gttggaactt gccggatttg caaggcctta tttctttaca
      841 gcggagcctt ctttggtggg actggggtat ttttcgatcg cctgttgttt ctcattcctc
      901 aatcgccggc ttctttatga catccttttg ttgattggtg tagtgttgat gctctccctg
      961 ttgggtagcc ctacggtatt gttaaccatt tttccggtag gcatttttat gcttgttaag
     1021 tacaggattt caggcaggaa aatactggcc attctgctgc tgattatcat ccccacggtg
     1081 atattactgc ggtttcctcc ggtgtttgag gcggcagaaa gagtcataac aagagtggcc
     1141 actgagacaa tggtggagaa cagtagcatg tatggaaggg tatatgtgcc ttattttata
     1201 acgcttccca aagtgctgcc cgtctacccg ctgtttggcg taggcttggg taattttgga
     1261 tatgtcaatt tattgtttgg gtacaatgct gattattacg agttggattc attgtttatt
     1321 catgggtcca atgggtttgt aaccatgata gtatacctcg gtattgcggg aacattgttg
     1381 gtttatttat taatacgatg gtttcataag tcattgtcta ttccctactg gtggatgaca
     1441 gtgtttttta tggtggtgag cgggcaaatt acaggcagcg tttccacgcc tcgtttttgg
     1501 gcctttacgg gcatagctat tgcatgcctg caggtaggaa gcaaacgaat cgaaaagcat
     1561 gatgccaact gaagtttcag taattattgt agcctaccga agcagcgatt tggtaaataa
     1621 ctgtattgca tctgtaatcc agtttacaaa aagcgtttcc attgaaataa ttgtggttga
     1681 taatgccgcg ggtaccaatg aggcttttaa ccttcaggcg gattgtggta gtgtgcccgt
     1741 atccatcatc aaaatgccat acaatgcagg ctttgcacgg gccaacaacc aggcttttaa
     1801 agtagcgaga ggtcaggctc tgttattact caatccggac acagaactgg tgagtgatgc
     1861 cattggcatt tgcttccatg cattgatgtc cggatcggcc gtagcctgtg ggacacagtt
     1921 gatatttgcc gatggcacat tccaaatgtc cggatggcac tttacaacgg gaaatctcgg
     1981 gtttttcctg aagttgcctt acctgaaaaa actctatgac aaaatcaggc gccgaccagc
     2041 acaactgaaa gtagaaggga atgaaccaag ggaagttgat tggatcaatg gcgctttcct
     2101 gatggtaaag gcgtcagtgg ttgagcgttg cggaggattg gatgaagaat tttttcttta
     2161 cgcggaggag cccgagttgt gtgccaggat tggcagggca ggcaaattgg ttgtttaccc
     2221 gtttgcgaga gttgttcatc atgtaggggg cgttaccagc caggcatttg aaagcgatgc
     2281 gcaggggtac ttttacatat ttgacaaaag aggcttgcaa atgatggtca gcgaactgtt
     2341 gcgcacccgc aagcagcacg gcataggctg gttgttgttt cattatgtga ttttcttttt
     2401 gtacatccct gttttttgga tgctgaacgc cgttgatttt atttggaaca gaagggctgc
     2461 tgcctacggg cgtaaggaac tgtgggggta tacacgtaat acttggaagg ctggatacta
     2521 cgtttggcgt attttgcagg gcaaaccttt cttctataag gtgttgtaaa agcgcatgaa
     2581 tcctttgaca gtaatccgga aaaatgccgg ttggtatggc ctgaacatct ttgtaaccgg
     2641 tagttcggca tttgtaggaa ttatcctttc aaagcagttg ctaagtcctg aagatttttt
     2701 gcagtttaat ttgttggcga atggggtaac cctgctcaat aatttcttga taggatggtt
     2761 tgtgcagagc atcattcgtt tttatcactc gtatcatctt ttttttcgca tcaggaacat
     2821 attgttgatt acagcggcca attttttggt cattagcatc ccagtgtttt ttttatggcg
     2881 aagttttata gggataggtg agccggtaat acagcccatc gtcttcatgt ttatcaatgc
     2941 gttatacacc attttgctgg cgctgtacca ggccacacac caggctaaaa cagtggccgc
     3001 ttctgaaacg ctgaggagta gtattatcat cattgggctg ctggcgccat ttctttcaac
     3061 cgtatctatt ggggcgtcat acttttggat actttggatt gtttcatgct tattgccggc
     3121 ccttttcttg tttgttcgcc gcaaaaaatt gtatcaaagc cgggaattga aggaaggaac
     3181 tgctccggcg attgcgatgc acaatagccg tacagccatc aagaatgttt tgcaattcgg
     3241 gcttcccctg tcgggatgga tgtttgtttc gtttcttttg ctcaattccg ataagtggta
     3301 tttgtacaaa tgcggattgc caccacaaat ggtggcaaat tatgtagccc tttctgatat
     3361 catgatgcgg ggtgtagggt ttctgttttc gcccattgtt acttctacct atcccgtgat
     3421 ttcaaaaatg tttgacgatg gcaggtacag cgaagtccag ttcgtgatga aacgggtggt
     3481 gacatgggaa ttgctattgt caacggctgc cgtagcaggg tttgtgattt cgcacagatt
     3541 gatttttgcc ttactgcgca ttaatgactc gcccaaaatg ttcctttgga tcgggttgtt
     3601 gctcatagta gtgcataccc tttggcaaat aagcgccatg tttcataaaa ttggcgagtt
     3661 gcgtttgaaa acagcgcagt tgctgctggc actgctgctg gctacagcat tggtatatat
     3721 tgccttctat aagttggtag taccggccag tcttcctggg gtaatggcgg tattcagctc
     3781 agggtttgta gtctacttta tttatagttt tctattgttt aaaactttta agtggaataa
     3841 gatcgatgaa taatttcgac ctggccattg cgcttcgggt ttatccccaa atttcaaaac
     3901 aaccgctggg aaatttcgaa acgaaatttg atctgttcaa ggttgggctt aaatcattgt
     3961 tggcttccct ggggccaata cgcgccaagt tttttgtcat tttagacagt tgcgacgaca
     4021 gctatgccgc atttgtaagc ggtttagtac catctcacag cctgcagatt gaacgggttg
     4081 acaacgcggg gaatgccaaa acctttctga tgcaaatgca atggctgcaa aaccagacta
     4141 atgccgaaat ggtatttctg gccgaagacg attatctata tcagcccggc atgttcggtc
     4201 gcatgatgga tcttataaag caatgtggtg acaatgtgca ttttgtatcg cctcacaatc
     4261 attggcacta ttactcaaac agcatacaca gggaagcagg cacccggctg ttgtttgaaa
     4321 atggagaaaa ctggcatatg ccggtgagca cttgtcttac ctttcttacc accaaaaaaa
     4381 tactgattga aacgagtggt gtatttgcaa cttatgccaa aggaaatttc gatttttcaa
     4441 tatttgtttc gctggtgcgt ccatccattt tcaggtttcc accagcgaag cttttggcaa
     4501 atagcttttt cctgaaaagt ttgctgaagg ctattcggca tacggcaggg caggtctatt
     4561 ttgggcggcc atatgtattg gcagtgcctt tggtgcctgt ggccacacac atgcaaatcg
     4621 atgaattggg gccaggtgtc aattgggctg ggctggttga gaattttaag aatgaactat
     4681 cattgtaaaa ccagttttac aatgatggca tgcgagcaat aatgaattac actgataagt
     4741 cagaaaacta ctttggtaat gcgaggcatg atttgttgcg tatcctgccg aacaatcctg
     4801 acgccaggct tttggaaata ggagcagccg gcggatatac cttgctggct gccaaggcgc
     4861 tggggaaatg tggctattgc gccggcattg aattgttttc acttccgggg agggcgcagc
     4921 aggatcccag aattgatgca ttttatgttg ggaatattga aaaagatact ttcccttttg
     4981 aatctgagat gtttgatgtg attctttttc cagatgtgtt agagcatttg gttgatccct
     5041 gggcagtact gcagcaatgc acggcatggt tgaagccagg aggtatttgt ataattagtg
     5101 ttccgaattt tcaattcttc aaaattgtat tccaggtttt tattgggggc aattttgcat
     5161 atgctaaaga tggtattatg gaccgcacac atttgcggtt cttttgcaaa cccaatgtaa
     5221 tgagccttgc caatacccat cccctcgagc taagccggat ctactcatcc tttgatttgc
     5281 aaaatcaatg gaagctaaag tggatgaacc ggcttacact gggcctattg agacgatatc
     5341 ttaccataca gttcattact ctatcagtaa aggcgaatgt cggatgacgc acatataatc
     5401 aatgccacgg tatggatatt agccccacac ttcaggcacc ccgccattag tggtggtgat
     5461 gtgtacattt tgggagtggc cacggggttg tcttacaagt atgccagggt ggaactggtt
     5521 ggagctgatg cgcagcacag tatcaggctt ggccgcatta ctgcggccac caccgtaggc
     5581 agccaaatga ggagcaaatg gctggcatcg gttagaacat tgctttttcg atcatcgtac
     5641 caacgggaac gctttgttac caaaaaatac ctggctgtag taaagcgcct tgtgatacac
     5701 aacggcgacc tggtattcgt tagttttatt gcgagtcatt ctgttttgca atgcatggat
     5761 gtgccctctt gtgaacgctt tatcctcaca cacaatttcg accccgatta ttttgatctt
     5821 atggctaatt ccacccgcaa cccagtagcc aggttggtat tcagaatgag tgccgactac
     5881 agtttgcggc aattgaaaga aatggatgga aatgtgcaac tggtccatat aaatgaacat
     5941 gacctgtcta agtacgctgg cattgccaat aatgtgcggc atcacctgtt tgaagccgga
     6001 gttttgtacg atgaacggcg gctaaacaat tttgcccagg cgcggaagaa ggacttggcc
     6061 ggcatgaatg cacctgtcct cggatttgtt gggtcgcttt gggcaacgca aaacgtggca
     6121 gggctcatgc actttgccga ggcctactgg cccgtcattc gtgccacttt ccccgatgta
     6181 caactaaggg tcattgggag cagcccagga ttggtagtga aagatctttg ccagagaaat
     6241 gggtggcaat tgtttcccga cctcatccag gaggattttg atgaagcggt ggcaggctgt
     6301 catttttcaa tattgccgtt tgagctctct gcgggcacaa aaatcaaaat cttatcctca
     6361 ttgcaatgcc ttgttccggt aataggcacc aggtgcagcc agccaaccgg gtttcatctg
     6421 ccgcccactt cattgttttc cgatgatgtt gctgattggg tgcatcatat ttcggcatac
     6481 attagtcagg tcacccagga ggaatcggca ggcggtttaa aagcaatgct tcaagcgcaa
     6541 agctggcaaa acaaagcgac ctcattggtg aaaacgattc accccagtat tcaaggaaaa
     6601 ttaaacacct gagatgaata agccggacca atcagtggtg ttgttgatga cgcgtattcc
     6661 tttccctccg gtgggcggcg acagggtgaa atcgtaccac atggtaaagc tgctgcatgc
     6721 tcggttccat cttcgcattg taattgtcag cgatgaaaag gcatcgcctg agcaaataaa
     6781 attcctggaa gaccattgcg aaacttttaa gctcttttgt ttttctcctt ttcgttgcag
     6841 gctaaacctt gtaaaggttt tttggaaaca ttccatgccg ctgcaggttg cctattacca
     6901 gtttggaaaa gtttcgcgtt tcctggaatc ctttattcat aaagatgata ttgttatttc
     6961 caccctcata agaagtgcgg aatacgcccg gtcttttccc aaccacaaag tgctcgatat
     7021 cgttgattct atttatctga actacaagcg ctccat
//
LOCUS       DATIQF010000747         2361 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_41995, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000747 DATIQF010000000
VERSION     DATIQF010000747.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2361)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2361)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2361
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41995"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            196..1047
                     /gene="mreC"
                     /locus_tag="VLL95_12865"
     CDS             196..1047
                     /gene="mreC"
                     /locus_tag="VLL95_12865"
                     /inference="COORDINATES: protein motif:HMM:NF010532.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HSR39798.1"
                     /translation="MRNFFLLLRRFYVLLLFLLLQVISITLLVRYNKSQQAKYMELAY
                     DFTGRINKKYTDVIGYFSLRDNNKALSEENTRLRNMLAENFTSIDTGAVLKRDTVLVD
                     SSKVIRKYLWRHARVINNSVSSQFNFITIERGRLQGVAPEMAVVSANGIVGLVTDVSD
                     NMAVVKSLLHRKSTTSVMLKKSGTTGLLEWDGKNAGLLQLKGIPKSTELKVGDTVLTS
                     NISLNYPAGLMVGTIAKVEKESEGNNYRLQIKPGTNFYSVDFVDVIENLFLKEQREIE
                     QRIKRDQ"
     gene            1084..1611
                     /locus_tag="VLL95_12870"
     CDS             1084..1611
                     /locus_tag="VLL95_12870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39799.1"
                     /translation="MSEPVKQIVRFILFILAQALVLNNVPPLHQFVAPLLYFLFLIWL
                     PFTVSRSWMLILGFITGFSLDMFSKTPGLHASACLMLAYLRTPMIALLVPKETAELKS
                     GSPSIRSMGFASYAFFVVILTIVHHAWLVMLEWMTFASFTYFLGKVFFTTLMSLLLIA
                     TTELLFRPIKKRRIE"
     gene            1648..2238
                     /locus_tag="VLL95_12875"
     CDS             1648..2238
                     /locus_tag="VLL95_12875"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HSR39800.1"
                     /translation="MDMHDALAQLRQVVMQIAPLSQEDWDAFAAIWSPFEAKRKTLLT
                     TTGDTERYLYFVIEGIQRIYYVKPDGKEATLLFTYAPSFGGVLDSFLMQRPSAYHLET
                     LTQSVFLRAHYNQWQALLQQHRAIEQLAQVAVVNAMSGLLRRMAELQCFTAEERFKAL
                     LSRSPHVLRLIPHKYLANYLALDATTFSKLLGTVRL"
BASE COUNT          614 a          618 c          571 g          558 t
ORIGIN      
        1 ccgatgatcc gctgaagagt gtggtgcgtg gcactggcat tgcgctgaag aactacgaca
       61 agtatccgtt cattatgcga tagaaccctg acctgctgag ggacgattgg tctcacagca
      121 ggtttgaggc cgaccctttg aaatccacac cagccagaat cttctcctcc ccacagggag
      181 gccgggaggg gccctatgag aaacttcttc cttctacttc gccgctttta tgtgttgctg
      241 ctgtttttac tgctgcaggt tatcagtatc acattgctgg tgcgctacaa caaaagccaa
      301 caggccaagt acatggaact ggcctacgac ttcacgggcc gtatcaacaa gaagtatact
      361 gatgtgatag gctatttcag cctcagggat aacaacaaag ctttatcaga agaaaatacg
      421 cggctgcgca acatgctggc cgaaaacttt acttccattg atacaggggc tgtactgaaa
      481 cgcgacaccg tgctggtcga ttccagcaaa gtgatccgca aatacctgtg gcgccatgca
      541 cgggtgatca acaactcagt ttcatctcaa ttcaatttca taaccatcga acgtggacgc
      601 ctgcaaggtg tagcccccga aatggcggtg gtaagcgcca atggcattgt ggggctggta
      661 accgatgtga gcgataacat ggccgtggtg aaaagcctgc tgcaccgcaa atcaaccacg
      721 agtgtgatgc tgaagaaaag cggcaccacc ggccttttgg aatgggatgg taagaatgcc
      781 ggcttgctgc agttgaaagg cataccgaaa agcaccgagc tgaaagtggg cgataccgtt
      841 ttgaccagca atatctcttt gaactaccct gccggcctca tggtaggaac gatagccaaa
      901 gtggaaaaag aaagtgaagg caacaactat cggctgcaaa taaagcccgg caccaatttt
      961 tacagtgttg acttcgtgga tgtcattgaa aaccttttcc tgaaagaaca aagagaaata
     1021 gagcagcgca ttaaaaggga tcaataaaaa aaccaaccac aacaaagcaa gcacaaccaa
     1081 tacatgagcg aaccggtaaa gcaaatagta cgattcatcc tgttcatact ggcccaggcg
     1141 ctggtactga acaacgtgcc gccgctgcat cagtttgtag ctccattgct gtacttcctc
     1201 ttcctgatct ggcttccgtt taccgtctct cgcagctgga tgctgatatt gggttttatc
     1261 actggcttca gcctcgacat gttcagcaaa acgccgggct tgcacgcatc ggcttgcctg
     1321 atgctggcgt acctgcgcac cccaatgatc gccctgctgg tacccaaaga aaccgcagaa
     1381 ctgaaaagtg gcagccccag cattcgctcc atgggatttg cctcctacgc attcttcgta
     1441 gtgatactca ccattgtaca ccacgcctgg ctggtgatgc tggagtggat gacatttgcc
     1501 agttttacct atttcctggg caaagtattt ttcaccactt taatgagcct tttgctcatc
     1561 gccactaccg agcttttgtt ccgccccatc aaaaagcgaa gaatagaata agcgctttgc
     1621 tttacttttc gttttcaacc atctgacatg gacatgcacg atgccctggc ccaattgagg
     1681 caggtagtaa tgcagattgc accgctcagc caggaagact gggatgcctt tgccgccatt
     1741 tggtcgccat ttgaagcaaa gcgtaaaacc ctgctcacca ctaccggcga tacggagcgt
     1801 tacctgtatt ttgtgatcga gggcattcaa cgcatttatt acgtgaagcc cgatggtaaa
     1861 gaagccactt tgttgtttac ctacgcccct tcatttggtg gtgtgctgga ttcattcctg
     1921 atgcaacgcc cctccgctta ccacctggaa acactgacgc agagtgtttt cctgcgggca
     1981 cattacaacc aatggcaggc gttgctgcag cagcaccggg ccattgagca attggcgcag
     2041 gtagccgtgg tcaatgccat gagcggcttg ctcaggcgaa tggccgaact gcaatgcttc
     2101 acggccgagg aacgattcaa agccttgctg agccgtagcc cgcatgtgct gcgattgata
     2161 ccgcacaaat acctggccaa ttacctggca ctggatgcca ccacgttcag caaattgctg
     2221 ggcacggtgc gtttgtgaaa aatcttggtc tgtaccaaga ttgttttggc cgcaagctgg
     2281 caagtttgca ttacaaaaca tcactaccat gaacaaacgc acacttctga accaacttgc
     2341 tgaacaaaca gaagcccatt t
//
LOCUS       DATIQF010000748         1582 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_300764,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000748 DATIQF010000000
VERSION     DATIQF010000748.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300764"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..410
                     /locus_tag="VLL95_12880"
     CDS             <1..410
                     /locus_tag="VLL95_12880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39801.1"
                     /translation="ENEAYDPQTDHYYIVGWKTRFPAAMKDVELNGSYEQPVMNMKMG
                     NAHRLRLINIAPAGDVVLRMTMDSTAVPVKCLAKDGTDLPTLQQAMVKQSQLFGVGET
                     GDFEFKPLKPGTYTLWVMYNEELSWKQKWVVTR"
     gene            478..666
                     /locus_tag="VLL95_12885"
     CDS             478..666
                     /locus_tag="VLL95_12885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39802.1"
                     /translation="MEQAYIIARLKEMTLPELLDALAEAHAGKRIDIYEQLDPLLIDT
                     TTDAVWAFIEAVQQLKKL"
     gene            complement(776..>1582)
                     /locus_tag="VLL95_12890"
     CDS             complement(776..>1582)
                     /locus_tag="VLL95_12890"
                     /inference="COORDINATES: protein motif:HMM:NF014066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HSR39803.1"
                     /translation="NTIIWEVIHPETNKRSVIVGTYHHIGNSFVDSLPIIKTALLNAD
                     AAIFESIDEEAHLTEILQKRKEQTDLSKLFNEEDYNRLIAISKEWKTSVFQLRPVEIL
                     ITLKREFEVSKCKTVKPTDKWDHFDNYLIDIARKNNKYLVGLETDTQQLDILNEIETS
                     WGTEKICQEISFWISKLSGEEASYEECHTVEQYLRFEIDYEFGSDCEDDILVTDRNRV
                     WMEKLTTLLAQKNCFLAVGLLHLKYSCGLLESLRRKGFIVRPLPISQAIP"
BASE COUNT          400 a          345 c          401 g          436 t
ORIGIN      
        1 aagaaaatga agcctatgat ccccagacag atcattacta tatcgtgggt tggaaaacca
       61 ggttcccggc cgcgatgaag gatgtggaac tgaatggtag ctatgaacag ccagtcatga
      121 acatgaagat gggcaatgcg catcgcctcc ggttaatcaa cattgctccg gccggagacg
      181 tggttctgcg aatgacgatg gacagtacgg cagtgcctgt gaaatgcctc gccaaggacg
      241 gtaccgacct gccgacgttg caacaggcca tggtgaagca aagccagcta tttggtgtag
      301 gcgaaacggg tgattttgaa ttcaaaccct taaaaccggg cacctacaca ttgtgggtga
      361 tgtacaatga ggagctgagc tggaagcaga aatgggtggt gacgcgatga tgcagttggg
      421 ttgatgcagc atggttggaa ccagcattac tataatgaaa atgttatcag gaagcatatg
      481 gaacaagctt acatcattgc aaggttgaaa gaaatgactc tgcctgaact gttggacgct
      541 ttggctgaag cccatgccgg caaaaggatc gatatctatg aacagttgga tcctttgctg
      601 attgatacca ccacggatgc cgtatgggcg tttattgagg cggtgcagca gctgaaaaag
      661 ttgtagtgaa ttcaaaagcg ttatagggaa ataaaaacgc cgtgtccctg aggagacacg
      721 gctgtaacat cgttgttggt gaaaacggca acaacggcga atgatgattg cactttcaag
      781 gtatggcctg gcttattggc aggggcctta caataaaccc ttttcttcga aggctttcca
      841 gcaagccgca actgtatttc aggtgcagca gcccaacggc gaggaagcag tttttttgag
      901 ccagcagggt tgtcagtttt tccatccaca cccggttgcg gtccgttacc aggatgtcat
      961 cttcacagtc gcttccaaat tcgtagtcaa tttcaaaacg caggtattgc tccacggtgt
     1021 ggcattcttc gtaagaagcc tcttcacctg aaagttttga gatccagaaa ctgatctcct
     1081 ggcaaatctt ttctgttccc catgaggttt ctatttcgtt caggatgtcc agttgctgcg
     1141 tgtcggtttc cagccccacc aaatacttgt tgtttttcct ggctatatct atcaggtagt
     1201 tgtcgaaatg atcccatttg tcggttggct ttactgtttt gcatttcgat acctcgaatt
     1261 cccgcttcag cgttatcaat atttcaactg gccgcagttg aaagacgctg gttttccatt
     1321 ctttactgat ggcgataagt ctgttgtaat cttcttcatt aaagagtttg ctgagatccg
     1381 tttgttcttt tcttttctga aggatctcgg tcaaatgcgc ctcctcatct atggattcga
     1441 aaatcgccgc gtcagcgttc agcaaagccg ttttaatgat cgggagggaa tcgacgaatg
     1501 agttccctat atggtggtag gtccctacaa taacggagcg cttattggtt tcaggatgta
     1561 tgacctccca aataatcgtg tt
//
LOCUS       DATIQF010000749         2538 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_179046,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000749 DATIQF010000000
VERSION     DATIQF010000749.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2538
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179046"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..999
                     /locus_tag="VLL95_12895"
     CDS             <1..999
                     /locus_tag="VLL95_12895"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSR39804.1"
                     /translation="IGRLKLDAAALGGSKRSTSIAVEYANTREQFKQPISNFGAIKHK
                     LAEMAIRCWADESELYRTSKLIQDKEEALMAAGKPLAEALLSAAEEYAVECAVMKVHG
                     SEVLDFVVDEGVQIHGGNGYSDEYPISRAYRDSRINRIYEGTNEINRLLSVDMVLKRA
                     MKGKIDLMGPAMNVMKELMSIPDFGNEDEGMFAAEVKAIANMKKAILMVAGGAVQKLM
                     MKLEQEQEVLMHIADMAIKTYVAESCLLRVQKLAALRGENAVQLDADMLRCYLNDAVD
                     TVNKHGKEAINAFADGDEQRMMLLGLKRFTKYGPFNSKDARRRIADKMISEGKYCF"
     gene            complement(1366..>2538)
                     /locus_tag="VLL95_12900"
     CDS             complement(1366..>2538)
                     /locus_tag="VLL95_12900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39805.1"
                     /translation="FKRTAIVSIPEDQPVYENFNCSYANGMFWFFDKDNRQWTGYKPV
                     PDGSASTSKTGGGGKTSPTVVPVTTNTGGGQNNSGGSKPTVIVNSGELYSTADLNASD
                     GQLLAYWKTKYGAEKVEELVKRSKESGWPEKISTFSGRSEVRPQLANYKAYRVAALND
                     DKSLLLIPAAENRHMPVGMIDNYDFYFVIGDKGLQIGDMLDPFSKGGAGGKDPMKGGG
                     AVSVAPVQAGNDFASQLNAIVADYANGFKNIKGDLVPKENDLDVTTKYRSKIALRGTS
                     RSYLSAGFGFGNSPLSYIAVFGEPAEKEDIRKRFNSIVSQVDNVKFGCCTFAKSKEIV
                     SDNMITQAYLPFDINGKMGKDFDGIVLEVAMTKYLSMDADKQNYWSLVLRLYKMED"
BASE COUNT          665 a          624 c          639 g          610 t
ORIGIN      
        1 attggtcgcc tgaaactgga tgcagcggca ctgggtggca gcaaacgcag cacatccatt
       61 gcggtggaat atgccaatac ccgtgagcag ttcaagcaac ccatcagcaa ttttggcgcc
      121 atcaaacaca aactggccga aatggccatt cgctgctggg ccgatgaaag tgaattgtac
      181 cgcaccagca agctgataca ggacaaagag gaagcactga tggcagccgg caaaccattg
      241 gccgaagcat tgctcagtgc tgccgaagaa tacgcagtgg aatgtgcggt aatgaaagtg
      301 cacggcagtg aagtgctcga ttttgtagtg gatgaaggcg tgcagataca tggcggcaac
      361 ggctacagcg atgaatatcc tatcagccgc gcctaccgcg acagccgcat caaccgtatt
      421 tacgaaggca ccaacgaaat caaccgtttg ctgagcgtgg acatggtgct gaagcgtgcc
      481 atgaaaggaa aaattgattt gatgggtcct gcgatgaacg tgatgaagga actgatgagc
      541 attccggatt ttggcaatga agacgaaggc atgtttgctg cggaagtgaa agccattgcc
      601 aatatgaaga aagccatcct gatggtggct ggtggcgccg tgcaaaagct gatgatgaaa
      661 ctggagcagg agcaggaagt gctgatgcat atagccgaca tggccattaa gacctacgtg
      721 gcggaaagct gcctgctgcg ggtgcaaaaa ctggcagcct tgcggggaga aaatgcggta
      781 caacttgatg ccgacatgct gcgctgctac ctgaatgatg ccgtagatac ggtgaacaaa
      841 cacggcaaag aagccatcaa tgcttttgct gacggcgatg aacaacgcat gatgttgctg
      901 ggcctgaagc gtttcaccaa atacggcccc ttcaacagta aggatgcccg ccgtcgcatt
      961 gccgacaaaa tgatcagcga aggaaaatat tgtttttagt acacagccgg atgaaacaat
     1021 gccggactcc aggccccgaa ttttgattcg gggctttttt attgtcccgt ttctgagggt
     1081 cgcaatgacg gctctgaaat cgaaggattc aatgcctttg tcgccaattg cacattggta
     1141 tcacaattat cgccatcgca gcagggcaaa gcattggtgc cacaaacgct gcactggtag
     1201 tgcccgtgca catggatcaa gggggcagga tgaccgcaaa actggcaaac ttgcatgcgg
     1261 caaatctata ggcctccatg gtttattagc atacacaaaa aatccacagg catgcacatg
     1321 cacaatacat ggcagattta aatgaaaacg caattgccag tattcctaat cttccatttt
     1381 gtaaagccgc aataccagcg accaataatt ttgtttgtcg gcatccatag acaggtactt
     1441 tgtcatggcc acttctagta caatgccgtc aaaatccttt cccattttgc cattgatgtc
     1501 gaaaggcaaa taggcctggg taatcatatt atctgataca atctccttgc ttttggcaaa
     1561 agtgcagcag ccaaatttta cgttgtccac ctggctgaca atgctgttga atcgcttcct
     1621 gatgtcttcc ttttcagcag gttcgccgaa aacagcaatg tatgaaagag ggctgttgcc
     1681 aaaaccaaag ccagcactga ggtatgaacg ggaagttccc cgcaaagcaa ttttcgacct
     1741 gtatttggtg gttacatcca ggtcattctc cttgggaacc aggtcgcctt tgatgttctt
     1801 aaacccattg gcataatcgg caacgatagc gttgagttgt gatgcgaaat cattgccggc
     1861 ttgtacaggt gctaccgaaa cggcaccacc gcccttcatg gggtctttac cgccggcacc
     1921 tccttttgaa aaaggatcta gcatgtcgcc aatttgcagc cctttgtcgc cgatcacaaa
     1981 atagaaatcg tagttgtcaa tcattcccac gggcatgtgc ctgttctcag cagctggtat
     2041 caacaagagc gacttatcgt cgtttagggc agccacccgg taagccttgt aattggccaa
     2101 ttgggggcgc acctcgctcc tgccgctgaa agtggagatc ttctcaggcc agcccgactc
     2161 cttggaacgc ttcaccaatt cctccacctt ttcagcgcca tactttgttt tccaataagc
     2221 caacaactga ccatcgctgg cattcaagtc agcagtagaa taaagttcgc cgctattaac
     2281 aatgacggtg ggtttgctgc ccccgctgtt gttttgccct ccgcctgtat tggtggttac
     2341 aggtaccact gttgggctgg tttttcctcc tccgccggtt tttgaagtag aagcgctgcc
     2401 atccggcaca ggtttgtagc ccgtccattg ccgattgtcc ttgtcgaaaa accaaaacat
     2461 accattggca taactgcagt tgaagttttc gtaaacaggc tggtcttccg gtatggacac
     2521 aatggctgtt cgtttgaa
//
LOCUS       DATIQF010000750         1666 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_27269, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000750 DATIQF010000000
VERSION     DATIQF010000750.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27269"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..988)
                     /locus_tag="VLL95_12905"
     CDS             complement(<1..988)
                     /locus_tag="VLL95_12905"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HSR39806.1"
                     /translation="MKNLPVITEPVYQKPEHFSRYQSFWLKYLFTSKDLPFIRLMTVI
                     HLTVIPISILLYTPLLQGGWWWLLCALHFFISGIRLRGPFGLFYHQVAHRPFFKKQYN
                     WLNNYVTWVVSPFFGHTPESYISHHIGMHHVENNNAEDKSSTLYYQRDKFSDFLRYYL
                     RFLTIGFAELFWYLFKRRKPKYYVPFSWGEITYYVVLTALCFVNLKATIMVFVFPYVT
                     GRLIMMLGNWTQHAFASPDDPDNVYTNTYNCLNTNYNHKCWNDGYHLIHHLKPGLHYT
                     EMPVEYLRLKDKLAAEKSFTFEGVHYLHLFAWLMTKRYDKMAEHLVNVNNQFS"
     gene            complement(1107..>1666)
                     /locus_tag="VLL95_12910"
     CDS             complement(1107..>1666)
                     /locus_tag="VLL95_12910"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSR39807.1"
                     /translation="YNVLFIADEIQTGLCRIGKMLACDHENVRPDILVLGKALSGGVL
                     PVSAVLCDDFIMMNIKPGEHGSTYGGNPLACAVAMEALQVLKDERMAENAETMGQLLR
                     SELEKLQSPHISLIRGKGLLNAIVINHSNPEAAWDLCLELKQLGLLAKPTHGDKIRFA
                     PPLTITHDQILESVSIIAKALRVLD"
BASE COUNT          444 a          377 c          433 g          412 t
ORIGIN      
        1 tgctgaattg attgttgaca tttacgaggt gctcagccat tttatcgtag cgtttggtca
       61 tcagccaggc aaacaaatgc aggtaatgta ccccctcgaa ggtaaatgac ttttcggccg
      121 ccagtttgtc cttgagccgc aggtattcga cgggcatttc ggtgtagtgc agcccgggtt
      181 tcaagtgatg gatcaggtgg tagccatcgt tccagcattt gtgattgtaa ttggtgttga
      241 ggcaattgta ggtattggta tacacgttgt cgggatcatc gggcgacgca aaggcatgct
      301 gtgtccagtt gcccagcatc atgataagcc ggccggtaac ataagggaat acaaagacca
      361 ttattgtggc cttaaggtta acaaagcaaa gagcggtaag cacaacataa taagtgatct
      421 cgccccatga aaacggaaca tagtatttcg gtttccttcg tttaaagagg taccagaaca
      481 attcggcgaa accgatggtg agaaagcgga gataatagcg caggaaatcc gagaacttgt
      541 cacgctggta atacagtgtg ctgctcttgt cttcggcatt gttgttttct acatggtgca
      601 tgccaatgtg gtggctgata tagctttcgg gggtgtggcc aaagaatggt gacacaaccc
      661 aggtgacata attattcaac caattgtact gcttcttgaa aaaggggcgg tgcgctacct
      721 ggtgataaaa caagccgaaa ggcccgcgta acctgatgcc tgaaatgaaa aaatggaggg
      781 cacaaagcag ccaccaccaa ccaccctgca acaacggcgt gtacaacaat attgaaatag
      841 gaatgacggt aagatgaatg accgtcatca ggcgaatgaa aggaaggtct ttgctggtaa
      901 agagatactt cagccaaaaa ctttgatatc gggagaaatg ttcgggtttt tgataaacag
      961 gttcagtaat caccggtaaa ttcttcatac actacaattc cattacgcag aacagcgatg
     1021 aaattatcgg atatatgcat acgatcacgc atctattttg aaagcaagca agccatccga
     1081 cagaggatgg cttgccattg atagcgttaa tccagcaccc gcaaggcttt ggcaatgatg
     1141 ctgacagatt ccagtatttg gtcatgggta atggtgaggg gaggggcgaa acggatttta
     1201 tcgccatggg tgggcttggc cagcaaaccc agttgtttca gttccaggca aagatcccag
     1261 gctgcttcgg ggttgctgtg gttgatcacg atggcattga gcaagccctt gcccctaatg
     1321 aggctgatgt gcgggctctg caacttttcc agttcgctgc gcaacaattg acccatcgtt
     1381 tcggcattct ccgccatccg ctcgtctttc aatacttgta atgcctccat ggccactgca
     1441 caggccagcg ggttgccgcc gtaggtgctg ccatgttcgc ccggtttgat gttcatcatg
     1501 ataaaatcgt cgcacaatac agcgctgacc ggcaatacgc cgccactgag cgccttgccc
     1561 aaaaccagga tgtcggggcg tacattctca tggtcgcagg ccagcatttt gccaatgcgg
     1621 caaagaccgg tctgaatttc atcggcaata aacagcacat tgtact
//
LOCUS       DATIQF010000751         4655 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_285335,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000751 DATIQF010000000
VERSION     DATIQF010000751.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4655
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285335"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(375..2099)
                     /locus_tag="VLL95_12915"
     CDS             complement(375..2099)
                     /locus_tag="VLL95_12915"
                     /inference="COORDINATES: protein motif:HMM:NF012592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HSR39808.1"
                     /translation="MSQRIVVDPVTRIEGHLRVEAEIEGGKIKDAFSSGTMVRLLEEI
                     LKGRDPRDAWAFVGRVCGVCTSVHSLTSVRCVEDALGITIPPNAEMVRNIMFCAQYMH
                     DHVVHFYHLHAMDWVDVVNALKADPKATSELAQSISPWPKSSVGYFSDLQKRIKAFVD
                     SGQLGIFANGYWGHPAYKLPAEVNLIGLAHYLEALEWQKEIVKVHTIFGGKNPHPNYL
                     VGGMACAIGIDDVSGINAERLAYVHQLLKQGKEFIEQVYIPDLMAIASFYKDWGAIGG
                     GLGNFMAYGDLSANGSKDPASFLFPPGVILNKDLSNIFEPDLRKEDEVQEFITHSWYD
                     YDGGRDKGLHPWKGESKINYTGPKPPFEHLDTTQPYSYLKTPRWKGHPVEVGPLARVL
                     IGYAKGKDGYKQVVDKALTDLNVPVEALFSTLGRTAARGLESVLVAEWSLQFYDQLIA
                     NIKNGDTRMANTDKFDPESWPAEAKGVGFSEAPRGALAHWIQIKDKKIANYQLVVPTT
                     WNASPRDGKGARSAYEAALVDTPVHDPKLPLEILRTIHSFDPCLACSVHIYDEEGKHI
                     SRVSVLGD"
     gene            complement(2130..3254)
                     /locus_tag="VLL95_12920"
     CDS             complement(2130..3254)
                     /locus_tag="VLL95_12920"
                     /inference="COORDINATES: protein motif:HMM:TIGR00391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HSR39809.1"
                     /translation="MPSFPTKEMPTYYDEVLRKGYSRRDFVKFCTMMAAFMGLESAGV
                     SQVVKAMETKRRLPVIWLHFQECTCCSESFIRSSHPIVADLLLDQISLDSSETLMAAS
                     GFQAEEAMRHTMEQHKGNYILCVEGSVPTAADGVYCMIGGKTSMQILEEAAAGAKAVI
                     AWGSCASNGCVQSAKPNPTSSTPIHKLVKGKPVIKVPGCPPIGEVMAGVIMHVVTFDR
                     IPELDNIGRPKAFYSKRVHDSCYRRPYYDAGLYVQSFDDENAKKGYCLYKVGCKGPST
                     YNACGVMRWNNGVSFPIQSGHGCFGCSEENYWDNGRIYERAAAFPGIGIEHDADTVGK
                     VALGVTATALAAHAIATNLRKQKLVANLEKEGKQSEKDLE"
     gene            3482..3685
                     /locus_tag="VLL95_12925"
     CDS             3482..3685
                     /locus_tag="VLL95_12925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39810.1"
                     /translation="MKKSFASTLLALTALPQLLLAHEGHGFTQGHSALHYIAEPYHAL
                     VFLIVVAGIAGLIYHFRKQSRKS"
     gene            3689..4030
                     /gene="hypA"
                     /locus_tag="VLL95_12930"
     CDS             3689..4030
                     /gene="hypA"
                     /locus_tag="VLL95_12930"
                     /inference="COORDINATES: protein motif:HMM:TIGR00100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008901 - ferredoxin hydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HSR39811.1"
                     /translation="MHELSIVESIIELATTEAQAANGTSIESIELDIGTLSGIEMNSF
                     WFAWQHATPQTMLANAQTNINTIEGKATCLICNAHFDISHYADPCPQCGSHFIQIQQG
                     KELRVKAITIT"
     gene            4060..>4655
                     /gene="hypB"
                     /locus_tag="VLL95_12935"
     CDS             4060..>4655
                     /gene="hypB"
                     /locus_tag="VLL95_12935"
                     /inference="COORDINATES: protein motif:HMM:TIGR00073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HSR39812.1"
                     /translation="MCTTCGCDAGTSVSIQKVTNDGHGEHHHHHHHGHHHHTHGHSHD
                     HDHHHDHDHHSHSHDHGHDHHHHEPARAHTIQLELDILNHNNKLAERNRGYFEAKSIL
                     ALNLVSSPGSGKTTLLEKTLATILPQQACAVIEGDQQTQNDARRIAATGAPVVQINTG
                     KGCHLDAEMINKAMKQLTLAENSILFIENVGNLVCPAM"
BASE COUNT         1188 a         1251 c         1071 g         1145 t
ORIGIN      
        1 acatttcata gcggcctaca tcttcctgtt caatttcctg ttcaggattt attggggctt
       61 tgttggaaat aagtatgcag attggaagaa ttttattcct accaacagga agatgtaggc
      121 cgctatgaaa tgtatcagcc gcatatagcc catgttgaat agctcggcgg cttccttttt
      181 gctttgtaca gccagcgggt taccaatata caacccggta aacaccagta ccaggatggc
      241 agcggcgttc aaccagtgat aaatgcgcac cggtaattcc caaacaaaaa cccggcgaag
      301 acgcttcacc cggcttttcc cattttgaat tgctacttgc atatcgttca aataacaggg
      361 taaacaataa ttgctcaatc acccagtaca ctcactcttg aaatgtgctt gccttcttca
      421 tcatagatgt ggacgctgca agccaggcag ggatcgaagc tgtgaatggt acgaaggatt
      481 tccagcggca gtttgggatc atgcaccggt gtgtccacca atgctgcctc gtatgctgag
      541 cgggcacctt tgccatctct tggcgaagca ttccaggtgg taggcactac cagttggtag
      601 ttggcgattt tcttatcctt tatctggatc cagtgtgcca atgcgcctct tggggcttcg
      661 gaaaatccga cgcccttggc ttcggcaggc cagctttcag gatcgaactt gtcggtgttg
      721 gccatgcggg tatcgccatt cttgatgttg gcaatcagtt ggtcgtaaaa ctgcaatgac
      781 cattcagcca ccaatacact ttcgaggcca cgggctgcgg tgcggcccag ggtggaaaac
      841 aaggcttcca ccggcacatt caggtcggtc agtgctttgt ctaccacttg cttgtatccg
      901 tcttttcctt tggcatatcc gatcagcacc cttgccaatg gacctacttc cacaggatgg
      961 cctttccagc gtggtgtctt cagatagctg tagggctgcg tggtgtcgag gtgttcaaac
     1021 ggcggtttgg gaccggtata attgattttg ctttcgcctt tccacggatg cagaccctta
     1081 tcacggccgc catcgtaatc gtaccacgaa tgcgtaatga actcctgcac ttcatcttcc
     1141 ttgcgcagat cgggttcgaa aatgttcgac aggtctttgt tcaggatcac gcccggaggg
     1201 aacaagaaac tggccggatc cttgctgcca ttggcactca gatcgccata cgccatgaag
     1261 ttgcccaagc cgccgccaat ggcgccccag tctttgtaga aagaagcaat ggccatcaga
     1321 tcaggaatat acacctgctc aataaattct ttgccctgct tcagcaattg atgcacgtaa
     1381 gccaaacgtt ctgcattaat gccactcacg tcatcgattc cgatggcaca ggccatgcca
     1441 cccaccaggt aattggggtg agggttcttt ccaccaaata tggtgtgcac tttcacgatc
     1501 tccttctgcc attccaaggc ttccaggtag tgggccagcc ctatcaaatt cacttcagca
     1561 ggcagtttgt aggcggggtg tccccaatag ccattggcga aaatacccaa ctggccactg
     1621 tctacgaagg ctttaatccg cttttgcagg tctgagaaat atcccactga actcttgggc
     1681 cacggcgaaa tgctttgcgc caattcagaa gttgcctttg gatcagcttt cagcgcattg
     1741 actacatcta cccaatccat ggcatggagg tggtaaaagt gtacaacgtg gtcgtgcatg
     1801 tactgggcgc aaaacatgat gttgcgtacc atttcagcat tgggcggaat ggtaatgccc
     1861 aaggcatctt ccacacaacg taccgaggta agcgagtgca cagaagtgca cactccgcat
     1921 acccgcccta caaaggccca ggcatcacgg ggatcacgtc ctttcagtat ttcttccagc
     1981 aggcgaacca tggtaccact gctgaatgcg tcttttatct tgccgccttc tatttcggct
     2041 tctacccgta aatgaccctc tatgcgggtg accgggtcga caactattcg ctggctcata
     2101 tatcagaata atatatttag taattaaggt tactcgagat ccttttcact ttgtttgcct
     2161 tctttctcca ggttggcaac caatttttgc ttgcggagat tagtggctat agcatgtgcg
     2221 gccaatgccg ttgcagtaac gccaagggcc actttaccaa cggtatcggc atcatgctca
     2281 atgccgatgc ctggaaaagc cgcggctcgt tcataaatgc ggccattgtc ccagtagttt
     2341 tcttcgctgc aaccaaagca gccatgtccg ctttgaatgg ggaaactcac gccattattc
     2401 cagcgcatca caccgcaagc gttgtaagtg ctggggccct tgcatcccac cttatacaaa
     2461 cagtagcctt ttttggcatt ctcatcatca aacgattgca catacaaacc ggcatcgtag
     2521 tatggacgac ggtagcaact gtcgtgcact ctcttgctgt agaaagcttt gggtcggcca
     2581 atgttatcca gttccgggat gcgatcgaac gtaaccacat gcatgatcac gccggccatt
     2641 acttcgccta ttggcgggca gcccggcact ttgatcaccg gctttccttt caccagcttg
     2701 tgaatcggtg tagatgaagt ggggttgggc ttggccgact gtacgcagcc attgctggca
     2761 caactgcccc aggcaatgac agctttggcg ccggctgccg cctcttccag tatttgcatg
     2821 gaggtcttac cgccaatcat gcagtagacg ccatcagctg cggtgggcac actgccttcc
     2881 acacacaata tatagttgcc tttgtgctgc tccatggtat ggcgcatggc ctcttctgcc
     2941 tggaagccag aagccgccat cagtgtttca gaagagtcaa gtgaaatctg gtcgagcagc
     3001 aggtcggcta caatggggtg cgacgacctg atgaagcttt cgctgcagca ggtgcactcc
     3061 tggaagtgca gccagatcac aggcagacgg cgcttggttt ccatagcctt cactacctgc
     3121 gaaacaccgg cagattcaag acccatgaaa gccgccatca tggtacagaa ttttacaaaa
     3181 tccctgcggg aatagccttt gcggagcacc tcatcgtaat acgtaggcat ctccttggtt
     3241 ggaaaagatg gcatatgcaa tggttgaaaa gagaaaaaat cagcagtata atgctaccca
     3301 atcctttacc ccatagcgat gacaacaatc aaaatgaaac atgacaattg tcaagaaaca
     3361 ccgaaatcta agctgctaat ttggaatccc tactgccagc attggtttgc ccacaccgct
     3421 caaggcaagg tgcctgccat cagcagttgc ttcaaatatt taaaaaacaa atgctttccg
     3481 gatgaaaaaa tcatttgcat caacactatt ggcacttaca gcactcccgc aattgctatt
     3541 ggcccacgaa gggcatggct ttacccaggg ccacagcgcc ctgcactata tcgccgagcc
     3601 ttaccatgcg ctggtgttcc taattgttgt ggctggtatt gcggggctga tttaccactt
     3661 ccgaaagcag tctcgcaagt catagcttat gcatgaatta tcgattgtag aaagcatcat
     3721 tgaactagcc accacagaag cccaggctgc caatggaacc agcatcgaat cgattgagtt
     3781 ggacatcggc acattaagtg gtattgaaat gaattccttc tggtttgcct ggcaacatgc
     3841 caccccgcaa accatgttgg ccaatgcaca aaccaatatc aataccatcg aaggaaaagc
     3901 cacctgcctg atctgcaacg cccacttcga catcagtcat tatgcagacc cctgcccgca
     3961 atgtggtagc catttcattc aaatacaaca aggaaaggaa cttcgggtaa aggcgatcac
     4021 cattacctga tcattaaatc cacaataaaa aatcatttta tgtgtactac ctgcggttgc
     4081 gacgccggca cttccgtttc catccagaaa gtaacgaatg atggacatgg cgaacatcat
     4141 caccatcatc atcatggcca ccatcatcat actcatgggc attcacacga tcatgatcac
     4201 catcacgatc atgaccatca ttcccattca catgatcatg ggcatgatca tcaccaccac
     4261 gaaccggcaa gagcacatac catccaactg gaactggaca tcctcaacca caacaacaaa
     4321 ctggccgaaa gaaaccgcgg atattttgaa gcgaaaagta tactggccct caatcttgtc
     4381 agttctcccg gcagcggaaa aaccaccctg ctcgagaaaa cactggcaac catattgccg
     4441 caacaggcct gtgccgtgat agaaggcgat cagcaaacac aaaacgacgc ccgacggata
     4501 gcagctaccg gagcccctgt tgttcaaatc aacacgggca aaggatgcca cctcgatgct
     4561 gaaatgatca acaaggctat gaagcagttg accctggcag aaaacagcat tttatttata
     4621 gagaatgttg gcaacctggt ttgccctgcc atgtt
//
LOCUS       DATIQF010000752         2830 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_285361,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000752 DATIQF010000000
VERSION     DATIQF010000752.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2830
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285361"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            350..>2830
                     /locus_tag="VLL95_12940"
     CDS             350..>2830
                     /locus_tag="VLL95_12940"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSR39813.1"
                     /translation="MRKPVLVLAGFLLLFLQIALAQNVDVSGTVLDEKGNPIVGATVQ
                     ERRTKQGTSTDEKGAFKLAAPKGAVIDISFVGYENKSFVVTEVSGPVRIQMIAGQSSA
                     LNEVVVTALGIKREKKALGYAVASVGKKDLELRPESDVVRIMQGKAPCVDIMAASGMS
                     GSGTNIIIRGVNTISGNSTPLFIVDGVPFDASTNEQASFVYGNTTSSRFLDLDPNNIE
                     TIDVLKGLSATTLYGELGRNGVVVVTTKNGSTKRTNKKMEMSMNQSFFWNNVANLPDY
                     QYSYGGGFDQSLGLAFFSNWGAKFTEPAALVAHPYDRAALRGAFPEFVGAKYEYKPYK
                     GSVENFFRTGLISTTSVNAAGSSQNANFNINYTYMDDKGFTPGNQVIKNTFGMGGTAR
                     LANKFTVSGSLNYAITDFKTPPTSTSFGSNPSSSSVFGNLIYTPVAINLMGSPADGNN
                     YLPWENPVDRSSVYYRAGNDIQNPRWTVANAFAGQKINRVFGNMSAKYDILNNLSLMY
                     RVGLDHYSDYNFLSQNKGGTVGGAQYQLGIHRTVNGYNTIWNHDLIANYNTNFGKDWR
                     LNVDAGFQSQERIYEQNGMKSTQQLVYGLFNHNNFIVHENFSEGGNRLDFISRTQSIG
                     LFAQATAAYKEYLFATIGGRNSWSSNLERENRSIFYPSASVSFIPTSAFASLKDNRTL
                     NYLKVRAGYATSANFGFPYTTRNQLNISTNRFEDRTGTVINTNSIDNRLANPNLKPEL
                     LSEVELGIEGKFFNNRVNLDFTVYNRDSRDQILDRDLDPATGFTVTSINAGSVRNRGI
                     EIGAGYTVIRNKDWRWQIDGNFTLNRSLV"
BASE COUNT          748 a          705 c          651 g          726 t
ORIGIN      
        1 cagcatgagc aggcaaaaga cgccttgcat tgggcagcca tgacctatgt ggtagcggcg
       61 gtagcttcta ttgccaccct ggttcagtac atcttcatat ttctgggcaa ccaggacaga
      121 gattaaaggg tgattattta tcactttttt taaaaatccc tgcccaaaaa tggcagggat
      181 tttttatgcc aaaattttcg ccggaaccct agtaaaatca gctatttaag gcatttttta
      241 taacctgtga ttatacccaa aggcgatgga ttgttgcaaa aaaatccttc ggcaatttgt
      301 ttgttaaatt tccttaacac ctatattcga ggcctaaact aacaactgta tgagaaaacc
      361 agtacttgta ttggctggct ttctgcttct ttttttgcag atagcattag cccagaacgt
      421 ggatgtttcc gggacagtac tcgacgaaaa aggcaaccct attgtgggcg ccactgttca
      481 ggaaaggaga accaaacaag gtaccagcac agacgaaaaa ggagctttca agcttgctgc
      541 tcccaagggg gcagtgatcg acatttcgtt tgtagggtac gaaaacaaaa gcttcgtggt
      601 aacagaagta tctggcccgg tacgcattca aatgatagcc ggccagtcat ctgcattgaa
      661 cgaagtggta gtgacagcgc ttggtatcaa gcgtgaaaag aaggccctgg gctatgcagt
      721 agcatccgta ggcaaaaagg atttggaact gcgtcctgaa agtgacgtgg ttcgtatcat
      781 gcaaggaaag gcaccttgtg tggacatcat ggccgccagc ggtatgagcg gcagcggtac
      841 caacatcatc atccgtggtg taaatactat ttccggtaac tctactccct tgttcattgt
      901 agacggtgtg ccctttgatg cctccaccaa cgaacaagcc agctttgtgt atggtaacac
      961 tacttccagc cgcttccttg atcttgatcc caacaacatc gagaccattg acgtattgaa
     1021 aggtttgagc gctaccaccc tgtatggtga attgggccgc aatggtgtgg tggtagtgac
     1081 caccaagaac ggttctacca agcgcaccaa caagaaaatg gaaatgagca tgaaccagtc
     1141 cttcttctgg aacaacgtag ccaacctgcc cgactatcag tatagctatg gtggtggttt
     1201 cgaccagagc cttggtttgg ccttcttctc taactggggt gccaagttta cagagcctgc
     1261 cgcattggtg gctcaccctt atgaccgtgc cgcattgcga ggcgctttcc ccgaatttgt
     1321 aggtgccaag tatgaataca agccgtataa gggttcagtt gaaaacttct tccgtaccgg
     1381 ccttatcagc actacctcag taaacgctgc tggttcgagc cagaatgcaa atttcaacat
     1441 caactatacc tacatggatg acaaagggtt cacaccgggc aaccaggtga tcaagaatac
     1501 ctttggcatg ggtggtactg cacgtttggc caacaagttc accgtgagcg gttcactgaa
     1561 ctatgccatt accgatttta aaacgcctcc tacttctacc agctttggta gcaacccctc
     1621 ttcttcctct gttttcggta accttattta tactccggtt gccattaacc tgatgggtag
     1681 ccctgctgat ggcaacaact acctgccctg ggagaacccc gttgatagat cttctgtgta
     1741 ctatcgcgct ggcaacgaca ttcaaaaccc aaggtggact gtggccaatg cgtttgctgg
     1801 tcagaagatc aaccgtgttt ttggtaacat gagcgccaag tacgacatcc tcaacaacct
     1861 gtcgctgatg tatcgtgttg gtttggacca ttattcagat tacaacttcc tgagccagaa
     1921 caaaggcggt accgtgggtg gtgcccagta ccaattgggt atccatcgta ctgtaaatgg
     1981 atacaatacc atttggaacc atgacctgat agccaactac aacaccaatt ttggcaaaga
     2041 ctggcgcctg aatgtggatg ccggtttcca aagccaggag cgtatctatg agcaaaatgg
     2101 tatgaagagc acacaacagt tggtgtatgg tttgttcaac cacaacaact ttatcgtgca
     2161 tgagaatttc agcgaaggcg gcaaccgtct cgattttatt tcccgtactc agagcatcgg
     2221 tttgtttgcc caggcaactg ccgcttacaa agaatatctc tttgcaacca tcggtggtcg
     2281 taacagctgg tcttctaacc tggaaagaga aaaccgctcc atcttctatc ccagcgccag
     2341 cgtttctttc attcccactt ccgcttttgc cagcctgaaa gacaaccgta ccctcaatta
     2401 cctgaaagtg cgtgccggtt atgctacatc ggccaatttt ggtttcccct atacaaccag
     2461 gaaccaactg aacatcagca ccaacaggtt tgaggacaga actggaactg ttatcaatac
     2521 caacagcatc gataaccgcc tggccaaccc caacctgaag ccggaactgc tgagtgaagt
     2581 ggaactgggt atcgaaggca aattcttcaa taaccgtgtt aacctcgact tcaccgtata
     2641 caaccgcgac tcaagggacc agatcctgga tcgtgacctc gatcctgcta ctggttttac
     2701 tgttacttct atcaatgccg gttctgtacg caaccgcggt attgaaatcg gcgcaggtta
     2761 taccgtgatc cgcaacaagg actggcgctg gcagattgat ggtaacttca ccctcaaccg
     2821 cagcctggtt
//
LOCUS       DATIQF010000753         5696 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_57648, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000753 DATIQF010000000
VERSION     DATIQF010000753.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5696
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57648"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..824)
                     /locus_tag="VLL95_12945"
     CDS             complement(<1..824)
                     /locus_tag="VLL95_12945"
                     /inference="COORDINATES: protein motif:HMM:NF013974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39814.1"
                     /translation="MASKDKMIATIDGNEAAAYVAYRINEVCAIYPITPSSTMAELAD
                     EWASKGTKNIWGNIPDVIEMQSEGGAAGTVHGALQTGSLTTTFTASQGLMLMLPNMYK
                     IAGELTPAVFHVAARSLAAQGLSIFGDHQDVMAARTTGFAMLSSASVQEAHDFALIAQ
                     AASLRSRIPFVHFFDGFRTSHEVSKLELIPDEVLRQLIPDDLVIAHRQRSLNPANPFI
                     RGTAQNPDVYFQGRETVNNFYNATPGIVAAVMDEFASLTGRRYSLYEYSGAADAERV"
     gene            complement(814..2466)
                     /locus_tag="VLL95_12950"
     CDS             complement(814..2466)
                     /locus_tag="VLL95_12950"
                     /inference="COORDINATES: protein motif:HMM:NF009410.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HSR39815.1"
                     /translation="MAISFNDITKPVDMLQHATGTGHLRSQRPLYMDFMPPCNSACPA
                     GENIQAWLSYAQAGDFETAFQKILEDNPFPAVMGRVCVKPCETGCNRNHVDETINIHA
                     VERFIGDKAVEESWTVKYDAKPSGKKVMVVGAGPSGLAAAYHLARLGHSVTIFEASGQ
                     PGGLLESGIPEYHLPRATLYAEIDRILRMGVELKVNYKVEDLLQEKANGGFDAVYLAI
                     GAYVGKVPQWDGKPGIPVLQAVDFLQQFRANKTPQIGQKVLIYGGGKLAMYLARVLKR
                     LGKVSTILYPGDRKLMPAYDFEADDAIAEGVEIEFLRNIKSIEGNQLTVEVMEMVKGK
                     PVPTGEEVVMESDSIILALGQEVDNSLYGNIEGVQCKADGGIVINNERMAGYPGIFAG
                     GDMLPGEQRSTTIAIGNGKKAARYIDAYLRGEAYQKPAKPLTAGYKRLHMWMKTDAPQ
                     KEQEKLAPEVAVRSFDEVMAGISDQEALYEAKRCLSCGNCFECDGCFGACPEDAIIKL
                     GKGKRYQFNYDACTGCGICYEQCPCHAIEMIPEPVNNNSNGQ"
     gene            2733..3320
                     /locus_tag="VLL95_12955"
     CDS             2733..3320
                     /locus_tag="VLL95_12955"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSR39816.1"
                     /translation="MANSLTDTEIIEKILRGEQQLFAVLVERYQNMVFSVAFRFANNR
                     EDAEELAQSAFVKAYQNLANYRGDAKFSTWLYTVVNSICLTFLRKRKLEVHSLDNEKV
                     FERADNLDSGMRANQVETKSKVQMVQQAIGMLAPDDAQVLTLFYQGEQSLEEIGKIMG
                     IDPNTAKVKLHRARQRLKTTLEKNFAAEVKDWREL"
     gene            3335..3841
                     /locus_tag="VLL95_12960"
     CDS             3335..3841
                     /locus_tag="VLL95_12960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39817.1"
                     /translation="MNKQATMEERLWDWIDGLCSAEEAAEVQHLVATLPEWKEKHGEL
                     LAIHQSLKADIELMQPSMRFTKNVMEQIAALSIKTTTRTYLNNKIVYGIGGLFVAMLS
                     AVVLYAIAMVDWAAGGSSFKMPSSQIDTINWGGLLQGPAGTAAVIIISVLSMVLLDQY
                     LRPKLLKR"
     gene            complement(3883..4743)
                     /locus_tag="VLL95_12965"
     CDS             complement(3883..4743)
                     /locus_tag="VLL95_12965"
                     /inference="COORDINATES: protein motif:HMM:NF041634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAEPLYID family protein"
                     /protein_id="HSR39818.1"
                     /translation="MKPVFISCFCWVIANAILNDVIGQNTDSLHYRHDSAYIANAEKL
                     KPTQRPKVLHAEPIFIDLMRDLGAHKGEKEWNVGVGMQDNLDYNAYKSLVEYEWAPVE
                     RLGLEVELPFTFYSGNSPQKPASRLESLKLAAQYTFLVAPKAHTSLAVGYIHELLTPS
                     FDRMGVDPWLQGHLATPFLVAAKRWGTYFHTLLYTGPMFEYNRNTQQWKSGGQYHFNL
                     HFMLPGTRHFMGVETNMYSGEIKNGITLRPQMRLEINEQWLVGVVAGIPVTKGQERLS
                     SFCRIIYEPH"
     gene            complement(4866..>5696)
                     /locus_tag="VLL95_12970"
     CDS             complement(4866..>5696)
                     /locus_tag="VLL95_12970"
                     /inference="COORDINATES: protein motif:HMM:NF016041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HSR39819.1"
                     /translation="FNSLEGRPLVRASIIVIPILALWFVENGFPLVTMRYRNSKSRHA
                     LVNFGFMFMHLVVHGSLAFLLVMVSDWCQRHQFGLVHWLGIQSVGGIIMAGLLSMDFF
                     GGWLVHWVEHKVPLFWRIHIVHHADNNIDVSSGLRHHPFEALNRWIFFIGGVFFMGLP
                     VYAIMIGQTVMSILTTVAHANIRLPEVLDKAISWVLVSPNMHKVHHHWKQPYTDSNYG
                     IVFSLWDRALGTYRYLPPAEIHYGLDRYYDNNRDEEIGALLKSPFEDATEVHQPVSLK
                     "
BASE COUNT         1398 a         1492 c         1453 g         1353 t
ORIGIN      
        1 accctttccg catcggcggc tccgctgtat tcatacaaac tgtagcggcg gccagtcaat
       61 gaggcgaatt catccatcac tgcagccaca atacccggag tggcattata aaagttgttg
      121 acggtttcac gtccctggaa atacacatca gggttttgtg cagtaccgcg aatgaaagga
      181 ttggcaggat tcaacgaccg ttgacggtga gcgatcacca ggtcatcggg tatcaattgg
      241 cgcagcactt catctggaat cagttccagt ttgctcactt cgtgagaagt ccggaaacca
      301 tcaaagaagt gcacaaaagg aatgcgtgaa cgaagcgaag cggcttgtgc tatcaaggcg
      361 aagtcgtgag cttcctgcac ggaagcgctg ctcagcatgg caaagccagt agtacgggct
      421 gccatcacgt cctggtgatc accaaaaatg gagagaccct gcgctgccag tgagcgggct
      481 gccacatgaa ataccgcagg tgtcagttca ccagcgatct tatacatgtt gggcagcatc
      541 agcatcaggc cctgggaggc ggtgaacgtg gtagtgagtg aaccggtttg caaagcaccg
      601 tgtacggtac cggctgcacc gccttcactt tgcatttcaa tgacatcagg aatattgccc
      661 cagatgtttt tggttccttt cgatgcccat tcatcggcca gttcagccat ggtgctgctg
      721 ggcgtaatgg ggtagatggc acaaacttcg ttgatcctgt acgctacgta agcagcggct
      781 tcgttgccat caattgttgc tatcatttta tccttactgg ccattgctat tgttgtttac
      841 aggttctgga atcatttcga tggcatggca ggggcattgc tcatagcaaa taccacagcc
      901 cgtgcaggca tcgtagttga attggtagcg tttgcctttg cccagtttga tgatggcatc
      961 ttcggggcat gcgccaaagc agccgtcgca ttcgaagcag ttgccacagc tcaggcatcg
     1021 cttggcttcg tacaaagcct cctggtctga aatgcctgcc attacctcat caaagcttct
     1081 tacggctact tccggagcca gtttttcctg ctccttctgg ggcgcatcgg ttttcatcca
     1141 catgtgcagg cgcttgtagc cggcagtcag tggtttggct ggtttctggt aggcctcacc
     1201 acgcagataa gcgtcgatgt atcgtgctgc tttcttgcca ttgccaatag cgatggtggt
     1261 actgcgctgt tcgccgggca acatatcgcc gccggcaaaa atgcccgggt aaccagccat
     1321 gcgttcgtta ttgatgacaa tgccgccgtc ggctttgcac tgaacgcctt caatattgcc
     1381 atacaggctg ttgtctactt cctggcccag tgccaaaatg atagagtcgg actccatcac
     1441 cacctcttca ccagtaggga ccggcttgcc cttcaccatt tccattactt ctacagtcag
     1501 ctgattgcct tcaatggatt tgatgttccg caggaattca atttcaacgc cttctgcaat
     1561 ggcatcatcg gcttcgaaat cgtaggcagg catcagtttg cgatcgccgg ggtacaatat
     1621 ggtggatact tttccaagac gcttcaacac ccttgccagg tacatggcca attttccgcc
     1681 accatagata agcaccttct ggcctatctg tggggttttg ttggcacgga attgctggag
     1741 aaaatcaaca gcctgtaaca caggaatacc cggtttgcca tcccattgtg gcactttgcc
     1801 cacataggcg ccaatggcga ggtatacggc atcaaatccg ccgtttgctt tttcctgaag
     1861 caggtcctct actttgtaat tcactttcag ttccactccc atgcggagta tgcggtctat
     1921 ttcggcatac agggtggcac ggggaaggtg gtactcggga atacccgatt ccagcaaacc
     1981 accaggttgc cctgaagctt caaaaatggt aacgctgtgc cccagacgtg ccaggtggta
     2041 cgctgctgcc aggccactgg gtccggctcc taccaccatc actttcttgc cgctgggctt
     2101 ggcatcatac ttcacggtcc agctttcttc cactgccttg tcgccaatga aacgctccac
     2161 agcgtggatg ttgatggttt catccacatg gttgcggttg caccccgttt cacatggctt
     2221 cacacatacg cgacccataa cggcagggaa aggattgtct tccaggattt tctggaaagc
     2281 cgtttcaaag tcgcccgctt gtgcgtagct cagccaggcc tggatgtttt cacctgcagg
     2341 gcaggcgctg ttacagggcg gcataaaatc catgtacagc ggtcgctggc tgcgcaggtg
     2401 gcctgtaccg gtggcatgct gcaacatgtc aacaggtttg gtaatgtcgt tgaaggagat
     2461 tgccatggtt attagtgtct tttatgggca taaaaaaagc ccctgatgga tgaggcaaat
     2521 tagaaacccg cctatgggca gatactgaca taagtcagga aggaacatga attatataag
     2581 gcgccttttg taaatacaac ggaaacgagg cccacgaact ggagcctccc aatccaaact
     2641 ggcagccaca acaggcgcaa ttacccgatt tctgttctac attacacagc ggtgtaacca
     2701 cgacaccctg cctgtagtct tataaccgga atatggccaa tagcctaacg gatacagaga
     2761 taatcgaaaa gatcctgcgg ggcgaacaac agttgtttgc cgtgctggtg gagcgttatc
     2821 aaaacatggt attctccgtc gctttcaggt ttgccaacaa ccgggaggat gcagaggagc
     2881 tggcgcaaag tgcctttgtg aaagcctacc aaaacctggc caactaccgc ggcgatgcca
     2941 aattcagcac ctggctgtac acggtggtca attcgatatg cctcactttt ctgcgcaagc
     3001 ggaagttgga ggtccattcg ctggacaacg aaaaggtatt cgaaagggca gataacctcg
     3061 acagcggcat gcgtgccaac caggtggaaa ccaagtcgaa ggtgcaaatg gtgcaacagg
     3121 ccatcggcat gctggccccc gacgatgccc aggtgctgac gcttttttac cagggcgagc
     3181 agagcctgga ggaaattggg aagatcatgg gcattgaccc gaatactgcc aaggtaaaac
     3241 tgcaccgggc ccggcaacgg ttgaagacga cgctggaaaa aaactttgcc gccgaagtaa
     3301 aagattggcg tgaactttaa aagcaatttg gattatgaac aagcaagcta ccatggaaga
     3361 aagattgtgg gattggatcg atggtttgtg ctccgccgaa gaagcggctg aagtgcagca
     3421 tttggttgcc accctgcccg aatggaaaga aaaacacggg gagctactgg ccatacacca
     3481 aagcctgaaa gccgatatcg aattgatgca gccctccatg cgcttcacca aaaatgtgat
     3541 ggaacaaata gctgcgctca gcatcaagac caccacccgc acttatctca acaacaagat
     3601 cgtgtacggc ataggcggcc tgtttgtggc catgctcagc gcggtggtcc tgtacgccat
     3661 tgccatggta gactgggcgg ctggtggcag cagtttcaaa atgccatcca gccaaatcga
     3721 tacgatcaac tggggcggac tgctgcaagg ccctgccgga acagctgctg ttatcatcat
     3781 cagtgttttg agcatggtgc tgctcgatca atacctgcgt cccaaactgt tgaagcggta
     3841 acccacagcg gcgcaccctg cgagggtgca gacaaaaagt ggttagtgcg gctcgtaaat
     3901 gatccggcag aacgagctca gtcgttcctg ccctttggtg accggtatgc cggccactac
     3961 tcctaccagc cattgctcat tgatctcaag gcgcatttgt ggccgaaggg taattccatt
     4021 cttgatttct cctgaataca tattggtttc cacccccatg aaatggcggg tgcccggcag
     4081 cataaaatgc aggttgaaat gatactgtcc gccggatttc cactgctggg tgtttcggtt
     4141 gtattcaaac atggggccgg tatagagcag ggtatggaaa taggtacccc aacgcttcgc
     4201 ggctaccaaa aaaggagtgg ccagatgtcc ctgcaaccat gggtcgacac ccatgcgatc
     4261 aaaggaaggg gtaagcaatt cgtggatgta cccgacggcg agagaggtgt gggcctttgg
     4321 tgccacaaga aatgtatact gcgccgccag tttcagactt tcgaggcgac tcgccggctt
     4381 ttgagggctg ttgcccgaat aaaaagtaaa aggcaattcc acctccagtc ccaggcgttc
     4441 cacgggagcc cattcatatt ccaccaggct tttgtaggca ttgtaatcca ggttgtcctg
     4501 catgcccacc cctacgttcc attccttttc ccccttgtgt gcacccaggt cccgcatcag
     4561 gtctatgaaa atcggttcgg cgtgcaacac cttggggcgc tgtgtgggtt ttagtttttc
     4621 agcattggct atgtaggcgc tgtcgtgcct gtagtgcagg ctgtcggtat tttggccaat
     4681 tacatcattc agaattgcat tggcaatcac ccaacaaaag caggaaatga aaacaggttt
     4741 catggggtga aaatatcaga aaccagcaaa acgaaggcaa ggttttcatt ttggacgccc
     4801 acggcataac cttgtatggt tgctttgcgt tttgcccgac accctttggg tgtaccgaat
     4861 gaaggctatt tcaacgaaac cggctggtgc acttctgtcg catcttcaaa aggacttttt
     4921 agcaacgcgc ctatttcttc atctctattg ttgtcgtaat acctgtcaag tccataatgt
     4981 atctctgccg ggggcaggta gcgataagta cccagtgccc ggtcccaaag gctgaataca
     5041 atcccgtaat tgctgtcggt ataaggctgc ttccagtggt gatgcacctt gtgcatgttg
     5101 gggcttacca atacccaact aatggctttg tccaagactt cgggcagcct gatattggca
     5161 tgcgccaccg tagtaagaat gctcataaca gtttggccaa tcatgatggc ataaaccggt
     5221 aatcccataa aaaatacccc tccaataaaa aatatccagc ggttcaatgc ctcaaacggg
     5281 tgatgtcgca gaccactgct gacatctatg ttattatcgg cgtgatgcac aatgtgaatg
     5341 cgccagaaca aaggcacttt gtgctccacc caatgcacca gccagcctcc aaaaaaatcc
     5401 atgctcagca aaccggccat tataatgccg cctacggact gaatgcccag ccagtgaacc
     5461 aacccaaact ggtgccgctg gcaccaatcg ctgaccatca ccaacaggaa tgccaatgag
     5521 ccatgcacca ccaggtgcat gaacataaaa ccaaaattca ccagcgcatg gcgacttttg
     5581 ctgttgcggt aacgcatggt caccagcgga aacccatttt ccacaaacca cagggcaaga
     5641 ataggtatca ctatgattga agcccgcacc aacggacgac cctcaaggct attgaa
//
LOCUS       DATIQF010000754         2491 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_149005,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000754 DATIQF010000000
VERSION     DATIQF010000754.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2491
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149005"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1602)
                     /locus_tag="VLL95_12975"
     CDS             complement(<1..1602)
                     /locus_tag="VLL95_12975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39820.1"
                     /translation="MRKWLLLLIIGFAGANKLDAQAFGGNPSSMKWFQVNNEAAKVVY
                     PKGMDSAAARVAAVIDYLYRNDSANIGARHRKISVVLQPDVNFSNAYVQLGPWRSEFF
                     LMPPQNPFTLGTIRWEDNLAIHEFRHVQQYNNFNVGISKVMGILGGENGRALANGGSV
                     PDWFFEGDAVWNETVFTEQGRGRLPFFMSSYKTVFNAGRNYSYMKMRNGSLRQYVPNH
                     YELGYLLVAYGRQQYGDSVWKNIARQAASYRSLFYPWQGAFKKNIGISYQQFVNAAMT
                     DFRQKSSQQVSADPKWLTASSSKNVINYQYPYPAGDGSIIALKTSFRDIPRFVRIDAN
                     GKEKMIAIKHIGYDDYFSYRNGRIVYAALQPDARWGNRDYSVLRMLDTKSGQTFTITR
                     KTRFFSPDINEEGTTLVAVEIVPGKASQWVLVDTEGNIQKRFSADSSFIYSHPKFINA
                     GKDVLSAVRQPDGKMGWLIWTPANNESRWLLPIADRLVGFPVVQDDYISFTASEGGTD
                     ALYRMNWNSGQRELLQQYSTGVYQGF"
     gene            complement(1705..>2491)
                     /locus_tag="VLL95_12980"
     CDS             complement(1705..>2491)
                     /locus_tag="VLL95_12980"
                     /inference="COORDINATES: protein motif:HMM:NF042789.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase"
                     /protein_id="HSR39821.1"
                     /translation="LFIHEGAGKLHTQYGSVPFSYGDYVVVPRGTIYQIEFAGENNRL
                     FIVESFSPVTPPKRYLSKYGQLLEHSPYCERDIRPPQDLQTFDETGDFLIKTKKKSKL
                     YGIHYGHHPFDVVGWDGCCYPYALSIHDFEPITGRVHQPPPVHQTFDAHNFVICSFVP
                     RLYDYHPEAIPAPYNHSNIDSDEVLYYVDGDFMSRKNVTRGMITLHPAGIPHGPHPGA
                     VEKSIGKKETQELAVMVDTFHPLQLTKQALTIENEGYVMSWAE"
BASE COUNT          626 a          633 c          573 g          659 t
ORIGIN      
        1 aaaaccctgg taaactccgg ttgagtattg ctgtaataat tcacgttgac cgctgttcca
       61 gttcatgcgg taaagtgcat cagttccacc ctccgaggct gtgaagctga tgtagtcatc
      121 ctgtactacc gggaacccca ccagcctgtc agcaatggga agcagccagc ggctttcatt
      181 gttagcggga gtccagatca gccatcccat tttaccatcc ggctggcgaa cggcagacag
      241 cacatccttg cctgcgttga tgaatttggg atgagaataa ataaaactac tgtcggcaga
      301 gaaacgcttt tgaatatttc cttccgtgtc aaccaaaacc cactgcgatg ctttgccggg
      361 tacaatttct actgccacca atgtggtgcc ctcttcgttg atgtcgggtg aaaaaaacct
      421 ggttttgcgg gtgatggtga aagtttgccc agactttgtg tccagcattc tcagcacact
      481 gtaatcccgg ttgccccacc tggcgtcggg ctgcagcgca gcatacacaa tcctgccatt
      541 gcgataactg aaatagtcat catatccaat gtgcttgatg gcgatcattt tctcctttcc
      601 gttcgcatcg attcttacga acctgggaat atcacgaaag cttgttttca aggcaataat
      661 gctgccatcc ccggcaggat atggatattg gtagttgatc acattttttg aggaagaggc
      721 tgtcagccat tttggatcgg ccgacacttg ctggctggat ttttggcgga aatcagtcat
      781 ggcagcattc acaaactgct gatagctgat gccgatattt tttttgaatg ctccctgcca
      841 tgggtaaaac aatgaccggt aagaagctgc ctgcctggca atatttttcc aaactgaatc
      901 gccatattgt tgcctgccat acgccaccag caaataaccc agttcgtaat ggttgggcac
      961 gtactgccga agcgaaccat tcctcatttt catgtaagaa taattcctgc cggcattgaa
     1021 tacggttttg tagctgctca tgaaaaaggg caaccggccc ctgccctgtt ccgtgaaaac
     1081 agtttcattc caaacagcat cgccttcaaa aaaccaatcg ggtaccgagc cgccattggc
     1141 aagtgccctg ccattttcac caccaagaat tcccatcact ttggaaatcc ccacattgaa
     1201 attgttgtat tgctgtacat ggcggaactc gtggatagcg aggttgtctt cccaacgaat
     1261 ggttcccagt gtaaacggat tttgcggtgg catcaggaaa aactcacttc gccagggccc
     1321 caactgtaca taggcatttg aaaaattgac atctggctgt aacaccacac tgattttcct
     1381 gtgcctggcg ccaatgtttg ccgaatcatt cctgtacaaa taatcgatca cggcagccac
     1441 ccttgccgcg gcactgtcca tcccttttgg atacaccact ttagcggctt cattattcac
     1501 ctggaaccat ttcatggaag aagggttgcc tccaaatgcc tgtgcatcca gtttgtttgc
     1561 gcctgcaaaa ccaatgatca ataaaagaag ccatttcctc acccggcgga agattttttc
     1621 aataatacga aagcaattga tcaggacaca aatgaaaatg acaaccgatg gttgccattt
     1681 cctattcact tgaataaagg atcctcactc cgcccaactc atcacatacc cttcattttc
     1741 aatggtcaat gcctgttttg tcaactgaag cgggtgaaaa gtatccacca tgaccgccag
     1801 ttcctgggtt tcctttttgc caatcgattt ttcaacggca cccggatgcg gcccatgtgg
     1861 gataccagcc ggatgcaggg tgatcatgcc acgggtcaca ttcttgcggc tcatgaagtc
     1921 gccatccacg tagtacaaca cttcatcgct gtcgatattg ctgtggttgt aaggcgccgg
     1981 aatggcttcg ggatggtagt cgtacaggcg gggcacaaag gagcagatca cgaaattgtg
     2041 ggcatcgaaa gtttgatgca ccggtggtgg ctggtgcaca cgacctgtaa tgggttcaaa
     2101 atcgtgaatg ctcaaagcat aaggataaca acatccatcc cagcctacca catcaaacgg
     2161 atggtggcca taatggatgc cgtatagctt cgatttcttt tttgtcttga tgaggaaatc
     2221 gccggtttca tcaaatgtct gcagatcctg cggtggcctg atgtcacgtt cgcaataagg
     2281 actgtgctcc agcaattggc cgtatttgct caggtagcgt ttgggcggcg ttacggggct
     2341 gaagctttct acaatgaaca ggcgattgtt ttctcccgca aattcaattt ggtaaatcgt
     2401 tccccggggc accactacat aatcgccata cgaaaatgga acgctgccgt attgtgtatg
     2461 cagtttgccg gcaccttcat gaataaacaa c
//
LOCUS       DATIQF010000755         1584 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_27351, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000755 DATIQF010000000
VERSION     DATIQF010000755.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27351"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1028
                     /locus_tag="VLL95_12985"
     CDS             <1..1028
                     /locus_tag="VLL95_12985"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR39822.1"
                     /translation="QMQDLLEKDIKAGSLGLSTGLEYEEGFYSSRHEVVELARTASKM
                     SARYISHLRSEDVRLDDALDEIIAIGREAKLPVQISHFKIALKDQWAKAGSYITQLER
                     ARAAGVNITADVYPYDFWNSTPRVLFPTKEFTSMKAAQYACDHLFDPAGSVMVRFAPN
                     KAYEGKTVAAIASLRGQSEAQTLLYIIAAADSFRQRYPDASGVATIMGKSMSDDDVAK
                     LLLWEGTNVCSDGGDGGHPRGYGSFTRVLDRYVKQQRIMSWETAIHKMTGQAAEHTGI
                     RNRGLLAPGYFADMVLIDPATVKDNASIEQSKALSDGISMVWVNGVLVYKDKQSTRQY
                     PGMFVGK"
     gene            1065..>1584
                     /locus_tag="VLL95_12990"
     CDS             1065..>1584
                     /locus_tag="VLL95_12990"
                     /inference="COORDINATES: protein motif:HMM:NF036581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1611 domain-containing protein"
                     /protein_id="HSR39823.1"
                     /translation="MVTEKPLAIVLTDGLLQHTDAKTAHGLIRGTDRFTIAAVIDIMH
                     AGKDAGEVLDGQHRNIPVLPDVATAFGQIPGIQFCIIGVATVGGVLPAHFLPVIEACI
                     RHGISIVNGLHDFLNDRPDLAALAARHGVSLIDIRRPKQRSELHFWDASIFSVTAPVI
                     AVLGTDCALGKRT"
BASE COUNT          391 a          386 c          457 g          350 t
ORIGIN      
        1 agcaaatgca ggacctgctg gagaaggaca tcaaagcagg ctcgctgggt ctttccaccg
       61 gtcttgaata cgaagaaggt ttctacagca gccggcacga agtggtggaa ttggccagga
      121 cggcttcaaa aatgagcgcc cggtacatca gccacctgcg cagcgaagat gtgagacttg
      181 atgatgcact ggatgagatc attgccattg ggagagaagc caaattgccg gtgcagatct
      241 cgcatttcaa aattgccttg aaagaccagt gggccaaagc gggcagctac attacacaac
      301 tggaaagggc aagggctgcc ggggtgaata tcacggccga tgtgtatccc tacgattttt
      361 ggaacagcac gccgagggtg ttgttcccga ccaaagaatt caccagcatg aaagccgcac
      421 aatatgcctg cgatcacttg tttgatcctg ccggctcggt aatggtgcgg tttgccccca
      481 acaaagcata cgaaggaaaa acagtggcag ccattgcttc tttgcgtggt caaagtgagg
      541 cccaaacgct gctgtacatc attgcggcag ccgacagttt tcgccagcgt tatcccgatg
      601 catcgggtgt agctaccatc atgggaaaat ccatgagcga cgatgatgtg gccaaactgc
      661 tgttgtggga gggcaccaat gtttgttccg acggcggtga tggcggacat ccccgtggtt
      721 acgggagttt cacccgggtg ttggatcggt atgtaaaaca gcagcgcatc atgagctggg
      781 aaacggccat tcataaaatg accgggcagg ctgctgaaca taccggcatc aggaatcgag
      841 gcttgttggc gcccggctat tttgccgata tggtgctgat tgacccggcc accgtgaaag
      901 acaacgccag cattgagcaa tcgaaagcgc tgagcgatgg catcagcatg gtatgggtaa
      961 atggcgtgct ggtgtacaag gataaacaat cgaccaggca gtatcccggt atgtttgtag
     1021 gcaaataatt gttcgggtaa aaagagaaaa gcattttgaa aaacatggtt acagaaaagc
     1081 cactggccat cgtactcacc gatgggttgc tgcagcatac cgatgccaaa acagcccatg
     1141 gcctgatcag gggcaccgac cggttcacta ttgcagccgt gattgatatc atgcatgccg
     1201 gaaaagatgc cggcgaggtg ctcgatggcc aacatcgcaa cattcccgtg ttgcccgatg
     1261 tagccaccgc tttcgggcaa atacctggca tacagttttg catcattggt gtggccaccg
     1321 taggaggcgt attgcctgcg catttcctgc cggtgattga agcctgcatc aggcatggca
     1381 tctccattgt aaacgggctg catgattttt tgaatgaccg acccgacctg gctgcattgg
     1441 cggcacggca tggcgtttcg cttatcgaca tcaggcgccc caagcagcgc agcgaattgc
     1501 atttttggga tgcatctatt ttttcggtga cggcgccggt gattgccgtg ttgggcaccg
     1561 attgtgcatt aggcaagcgg acta
//
LOCUS       DATIQF010000756         3425 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_102921,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000756 DATIQF010000000
VERSION     DATIQF010000756.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3425
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102921"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..605)
                     /locus_tag="VLL95_12995"
     CDS             complement(<1..605)
                     /locus_tag="VLL95_12995"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSR39824.1"
                     /translation="MKIEQIYTGCLAEAAYYIESNGEAVIIDPLRETTPYIERAKKDG
                     ATIKYILETHFHADFVSGHIDLAKATGATIVYGPTAEPNFKAHVAKDGEVLKVGALEI
                     VVLHTPGHTMESSTFLLRDEKGRDVAIFTGDTLFIGDVGRPDLAVKSNLSREDLAGYL
                     YQSLQEKILPLADEVIVYPGHGAGSACGKNMSKETTDTLGH"
     gene            886..2097
                     /locus_tag="VLL95_13000"
     CDS             886..2097
                     /locus_tag="VLL95_13000"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HSR39825.1"
                     /translation="MKHHQIVVVGGGNAGLSVASKLLLKNSKLDIAIIEPSEKHYYQP
                     AWTLVGAGTFDVNETIKNEGDYIPKGATWIKDAAASFSPDTNTMTCASGESYSYDVLI
                     VVPGIQLDWKKIEGLTETLGQNNVTTNYQFKTAPYTWELIKNFKGGTAVFTNPPTPVK
                     CGGAPHKIMWLACDYWRKKGILDKCDVHFVSGGSILFGVPEYRKTLEEKVKEYGVKVH
                     LKQTITKIDGPGHKIWFEGPADDTVGGAKEKTMMEFDMLHVVPPQSAPDFVKQSPLAD
                     AASPLGWVEVNKNTFQHTRYANVFSCGDVCNAPASRTGAAIRKQAPVMVDHILAFING
                     TKATSSYDGYSACPIPTEYGKLMLAEFDYENKPKMTFPFDQAKPRQTMWILKKYVLPW
                     LYWHRILQGKA"
     gene            2400..>3425
                     /locus_tag="VLL95_13005"
     CDS             2400..>3425
                     /locus_tag="VLL95_13005"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HSR39826.1"
                     /translation="MKQNYLFLALTCCMYMLACQKQLEPIDNSKNGIAPQSLLNIKNN
                     SGHIKLAVLSDIHYMHPSLIVNNGISGTEFQKMLDLNPNKALLEYSVPIFESVLDAIL
                     IEKPDILLIAGDLTKDGELVGAQAVAEKLKALKDAGIKIYLVPGNNDINNNSSFLYDG
                     NTRTPVPNTSPAQYEEIFSDFGFASAISRDASSLSYVAEPFEGLRILAIDAAKYSPTY
                     SRSGKIKPATMQWIIQQMNEAKEQNITVLGMMHHNLIEHLTDQTKVMPGTVVDDWSTK
                     SDNADMLIAAGLKVIFTGHNHSNDITMRVTNGDTLYDVETGSLVAAPSPYRIMTLKNK
                     ELDIETRY"
BASE COUNT          977 a          829 c          768 g          851 t
ORIGIN      
        1 tggtggccca atgtatcggt ggtttccttg ctcatgttct tgccacaagc gctgcctgca
       61 ccatgaccgg gatacacaat cacctcatcg gccaacggca gaattttctc ctgcaatgat
      121 tggtacaggt aaccagccag gtcttcgcgg cttaggtttg acttcaccgc caggtcggga
      181 cgccctacat cgccaataaa gagtgtgtcg ccggtgaaga tggccacgtc cctgcctttt
      241 tcatcacgca gcaaaaaagt ggaggattcc atggtatgac cgggtgtgtg cagcactaca
      301 atttccaacg ctcctacttt caacacctcg ccatctttgg ccacatgggc tttgaaattg
      361 ggttcggcag taggtccata tacaatggtg gcaccggttg ctttggccag gtctatatga
      421 ccactcacaa agtcggcatg aaaatgcgtc tccaggatgt atttgatggt agcgccgtct
      481 tttttcgctc tttctatgta gggtgttgtt tcccgcaagg gatcaatgat cactgcttcc
      541 ccgttgcttt cgatatagta ggcagcttcg gccaggcagc cggtatagat ctgttcaatt
      601 ttcatacaga tgttttttga tggttgaaaa tggatttaag cgacctcgtg ccaggaaggc
      661 acaggcaaac aattctgtat tacaaatttg gcaatgaagg ggggctaccc tcaatgatgg
      721 cagtcaccgg aatgcatgat taaaatcagc cattccggct gctgaaagtg actattgtcc
      781 tgaggcagcg gatgtattga aagtagtttt acaccgaaaa acgacacagg aaaaccaaac
      841 gtttgtctaa ccagccacgc cccggcgcgg cgcaattttt accaaatgaa acatcatcag
      901 atcgtagtag taggtggcgg caatgccggc ctttctgtgg ccagcaaatt gctgctcaaa
      961 aattcaaaac tggatatcgc cattattgaa cccagcgaga agcattatta ccagcctgca
     1021 tggaccctag taggcgccgg cacatttgat gtcaatgaaa ccattaagaa tgaaggcgat
     1081 tatatcccca aaggagctac ctggatcaaa gatgctgctg ccagcttttc cccggatacc
     1141 aataccatga cctgcgccag tggcgaatca tactcgtacg atgtattgat tgtagtgcca
     1201 ggcatccaac tggattggaa aaagattgaa gggcttacag aaacactggg acagaataat
     1261 gtaaccacca actatcaatt caaaacagcg ccctacacct gggaactgat caagaatttt
     1321 aaaggtggaa ccgcggtgtt taccaaccct cctacgccgg taaaatgtgg tggcgctccg
     1381 cacaagatca tgtggctggc ctgcgattat tggcgcaaaa aaggcatcct cgacaaatgt
     1441 gatgtacact tcgtttcggg tggcagcatc ctgtttggcg tacccgaata ccgcaaaaca
     1501 ctcgaagaga aagtaaaaga atacggcgtg aaagtgcatc tcaaacaaac catcaccaaa
     1561 attgacggcc ccggtcataa gatctggttt gaaggacctg ccgatgatac cgtgggcggc
     1621 gccaaagaaa aaaccatgat ggagtttgac atgctgcacg tagtgccgcc gcaaagcgcc
     1681 cccgattttg tgaagcaaag tccattggct gatgccgcct ccccgctggg atgggttgaa
     1741 gtgaacaaga atacattcca gcacacccgc tatgccaacg tgttcagttg cggcgatgtg
     1801 tgcaatgctc ccgcctcccg cacaggtgcg gccatacgca agcaggctcc cgtgatggtg
     1861 gatcatattc ttgcctttat caacggcacc aaggctacca gcagttatga tggctacagc
     1921 gcctgcccca tccctaccga gtacggcaaa ctgatgctgg cagaatttga ctacgaaaac
     1981 aagcctaaaa tgacattccc gttcgaccag gcaaagcctc ggcaaacaat gtggatcctg
     2041 aaaaagtatg ttcttccctg gttgtattgg catcgcattc tccagggcaa agcataggtt
     2101 agatttggtt tggtgtttct gcaaaaaggc ggccggatgg ctgccttttt ctttttaacc
     2161 catactcgtt gaaccaacat tagttcacaa attcaataaa taccctacac acacattata
     2221 atttaattca ttttagttac tttttttatg acgcggggtc ataaactgct aaatgccacc
     2281 gattattttt gcaacaaact ccaaccctat ggacaaaatg ctgcctacct caatctacga
     2341 ggcatgctaa gttttcattt cgaaacaaat aggttgattc acaattaatt ttcatagcca
     2401 tgaaacagaa ttatttgttc ctggcattaa catgttgcat gtacatgctc gcatgccaaa
     2461 aacaacttga accaattgac aatagtaaaa atggtatcgc cccacaatca ctgttaaaca
     2521 tcaaaaacaa tagtgggcat ataaaactcg ctgtcctgtc tgatattcat tacatgcacc
     2581 catccctgat cgtgaataat ggaatttcag ggactgagtt tcaaaaaatg ttggacctta
     2641 atccgaataa ggcattgctg gagtatagcg tgcccatatt cgaaagtgtg ctggatgcta
     2701 tcctgataga aaaaccggac atcctcctga ttgctggcga cttgaccaaa gatggtgaat
     2761 tggttggcgc acaggccgtt gcagaaaaat taaaagcgct aaaggatgcc ggcattaaga
     2821 tttacctggt gcccggcaac aatgatatca acaacaacag ttccttcctg tacgatggca
     2881 ataccagaac tccggttccc aatacgagtc cagcgcaata cgaggaaatc ttctctgatt
     2941 ttggcttcgc atctgccatc tcaagggacg cttcatcctt gagttatgtt gctgagcctt
     3001 ttgaagggct aaggatcctt gccattgatg ctgccaaata ttccccaacc tatagcaggt
     3061 caggaaaaat aaagccagct accatgcaat ggatcattca acaaatgaat gaggcaaaag
     3121 aacagaacat taccgtgtta ggcatgatgc accataattt aatagaacac ctcaccgacc
     3181 aaaccaaggt gatgcctgga acagtcgttg atgactggag tacaaaatca gataatgctg
     3241 acatgctaat cgcagcaggg cttaaggtca ttttcactgg ccataaccat tcgaacgata
     3301 tcaccatgag agttactaac ggcgacacgt tgtatgatgt ggaaacaggt tctttagttg
     3361 ccgcaccttc cccctaccgg ataatgacac tcaaaaacaa agaattggac attgaaacca
     3421 gatat
//
LOCUS       DATIQF010000757         2488 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_164022,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000757 DATIQF010000000
VERSION     DATIQF010000757.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2488
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164022"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..397)
                     /locus_tag="VLL95_13010"
     CDS             complement(<1..397)
                     /locus_tag="VLL95_13010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39827.1"
                     /translation="MNLIIFGGLLGVIMMFTGLLVRNKRQVTLVATALMAVLLLLNTW
                     EMVSAQPVFDVNTASMLATSRFGLLLNEVMLAAGFIYLLLSGRDIEKVGNHTAEYYAL
                     IFFIYCGIGISTSYINLLMLFLGIEIISIP"
     gene            complement(435..1871)
                     /locus_tag="VLL95_13015"
     CDS             complement(435..1871)
                     /locus_tag="VLL95_13015"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HSR39828.1"
                     /translation="MILSSFIFIPLLAGLLLFFVKQEQLAKGIGLVAGLATLAAVIYA
                     IGLPAGSPALFVSKTWLGSINSNFSLLLDGPAKITTLLTAVSFVIIYIATWSNSYQNA
                     HQYHALMMLTMSGLMGVFLSADALLFYFFWELALVPVYFLCSIWGGERRIPVTFKFFI
                     YTFVGSVIMLIGIIYLYNKTPDTSFAWKSFTSVVLTAKEQAYFFWFFFIAFAIKMPIF
                     PFHTWQPDTYETAPTGTTMVLSGVMVKMGLFAVIRWLLPVFPEMSAKMANYVILLSII
                     GILYASLIAIRQDNIKRLIAYSSIAHIGLMSAALFVRNDLAYNGALIQLFNHGINIIG
                     LWIVVDIIEQQTGIRKMSELGGLAQQAPRLAIMLVIVALANIALPLTNAFIGEFLMFS
                     GLFKMNIWYAVIAGISIILAAVYTLGMIQKVFYGNKNEAIKVADLNATQWLALAAIVV
                     MIFVMGVYPAPLMKLGETTAQAVAALIK"
     gene            complement(1901..>2488)
                     /locus_tag="VLL95_13020"
     CDS             complement(1901..>2488)
                     /locus_tag="VLL95_13020"
                     /inference="COORDINATES: protein motif:HMM:NF013198.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39829.1"
                     /translation="SYRGDAHHHPHESPKAMTIPLILLAMLSVVGGLVGIPELFMSNG
                     HRLEEFLAPVFENSKSFMEHHNHPSHSTEWMLLGVSVSLILVAIVLALRVFSKYEKTD
                     ADATGLGKLLQNKWYVDELYDALIVKPVLALGNVLGNVIEKSGIDRLVNGVGKGIQYS
                     SRQLRLMQNGNVGAYLLMMVVALILLIRLVFYIKM"
BASE COUNT          679 a          639 c          579 g          591 t
ORIGIN      
        1 gcggaataga aatgatctcg ataccgagaa acaacataag caggttaatg tagctggtgg
       61 agattcctat gccacaatag atgaagaata tcaaggcgta atactccgcg gtgtggttgc
      121 ccactttttc aatgtccctt ccgctgagga gcaggtaaat gaacccggca gccagcatca
      181 cttcgttcag cagcaatcca aagcggctgg tggccagcat gcttgccgtg tttacgtcaa
      241 atacgggctg ggcacttacc atctcccagg tgttgagcag tagtaatacc gccatcaacg
      301 cggtggcgac cagggttacc tgccgcttgt tgcgcaccag caagccggtg aacatcatga
      361 ttacgcccag taaaccacca aaaatgatca ggttcatatc ttgagtttcg ttagttagtg
      421 attcgcttct ttagttactt gattaaagcg gctaccgcct gcgctgttgt ttcacccagt
      481 ttcatcaggg gtgccggata aacacccatc acaaagatca ttacgactat tgccgccaaa
      541 gccagccatt gggtagcgtt caggtctgct acttttatgg cctcattctt gtttccgtaa
      601 aacactttct ggatcatgcc cagtgtgtat acagcagcca ggatgatgct gataccggca
      661 ataaccgcat accaaatatt cattttgaaa agcccgctga acatcaggaa ttcgccaatg
      721 aatgcattgg tgagaggcag cgcaatattg gccagcgcta caatcaccag catgatcgcc
      781 agtcggggtg cctgctgcgc cagtccgccc agttcactca ttttcctgat accggtttgc
      841 tgttcaataa tgtctaccac aatccacaaa ccaatgatgt tgatgccatg gttgaacagt
      901 tggatcaacg cgccattata agcgaggtca ttccgtacaa acaatgcggc actcatcagt
      961 ccaatgtggg caatggaaga ataggcgatc agtcgcttga tattgtcctg cctgatggcg
     1021 atgagcgaag catacaaaat gccaatgatg ctgagcagga taacgtagtt ggccattttg
     1081 gcgctcattt cggggaacac gggcaacaac cagcggatca ccgcgaaaag ccccattttc
     1141 accatcacgc cactcagcac catggttgta ccggtcggtg cagtttcgta agtgtcgggc
     1201 tgccaggtat ggaaagggaa aatgggcatt ttgatggcaa atgcgatgaa gaagaaccag
     1261 aagaaatagg cctgctcttt ggcagtaagc accacactgg taaaactctt ccacgcaaag
     1321 ctggtatcgg gtgttttgtt gtacaggtaa atgatgccaa tgagcatgat gaccgaacct
     1381 acaaatgtgt agatgaaaaa cttgaacgta accgggatgc ggcgctctcc tccccaaatg
     1441 ctgcagagga aatacacagg caccaatgcc agttcccaga aaaagtagaa caacaaagcg
     1501 tcggcactca aaaacacacc catcaatccg ctcatggtaa gcatcatgag tgcgtggtac
     1561 tggtgtgcat tttgatagct attgctccag gtggcaatgt aaatgatgac aaagcttacc
     1621 gccgtcagca aagtggtgat cttggcgggc ccatccagca gcaacgagaa attactgttg
     1681 atgctgccca gccaggtttt tgaaacgaac aatgcagggc tgccagcagg caatccgatc
     1741 gcataaatga cagcggccag cgtagccaat ccggccacca gtccgattcc ctttgccaat
     1801 tgttcctgct ttacaaaaaa cagcaacaag cctgccaaca gcggaatgaa tatgaatgaa
     1861 gagaggatca tcacgtaatc tttttaaacc ttttgttcgt ttacattttt atgtagaata
     1921 ccaggcggat cagcagtatc aaggccacta ccatcatcag caggtaggca cccacgttac
     1981 cattttgcat caaccgcaat tgacggctgc tgtactgaat gcctttccct accccgttta
     2041 ccagcctgtc aataccactc ttttctatca cgttgcccag cacattgccc aatgcaagta
     2101 caggcttcac aataagggcg tcatacagtt catccacgta ccacttgttc tgaagcaatt
     2161 tgcccagccc cgtggcatcg gcatcggtct tttcgtattt gctgaacaca cgcaatgcca
     2221 gtactatagc caccaagatg agggagacac ttacacccag cagcatccat tccgtgctgt
     2281 ggctgggatg attgtgatgc tccatgaacg attttgaatt ctcaaatacc ggcgccagga
     2341 actcttccag cctgtggcca ttgctcataa acaattcagg gatacctacg agtccgccaa
     2401 ccacactcaa catggccagc agtatcaaag gaatggtcat ggctttggga ctttcatgcg
     2461 gatgatggtg cgcatcacca cgataact
//
LOCUS       DATIQF010000758         1682 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_57742, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000758 DATIQF010000000
VERSION     DATIQF010000758.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57742"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1529
                     /locus_tag="VLL95_13025"
     CDS             <1..1529
                     /locus_tag="VLL95_13025"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR39830.1"
                     /translation="VNNGDVWQGTGLDSLGNTLTWSAVRTKEATPKSDSAAKKAAPQM
                     GANLFPFVGFGAKEMPKQETLLIKNAMVWTSEKEGVLKETDVLVKNGKIAAVGKNLSD
                     ASARVIDGTGKHLSAGIIDEHSHIATASINEGGQSVTSEVRIKDNLDPDDINIYRQLS
                     GGVTTSHILHGSANTIGGQTQLIKLRWGANDEGLMFQNWDPFIKFALGENVKRTTATT
                     GNTRFPDTRMGVEQVLVDAFTRAKDYEAAMKANKAGTRRDLELDALVEIMNQKRFITC
                     HSYVASEIVNTMRVAEQFGFKINTFTHILEGYKVADKMKAHGANASTFSDWWAYKLEV
                     QDAIPYNAYIMNKVGLNVAINSDDAEMARRLNQEAAKSVKYGGLTEEEAMNMVTINPA
                     KMLHVADRVGSIKVGKDADLVLWSDNPLSIYAKSMYTIVDGTVFFDREKDMQVRKQVQ
                     DERTRLIRKMVGEKGAGRPTIAAQPSYKLVHTCGDHSHKMGLLELDEYDLETSVAEMK
                     "
BASE COUNT          467 a          391 c          464 g          360 t
ORIGIN      
        1 gtgtgaacaa tggcgatgtg tggcagggta ccggtctcga cagcctgggc aatacactga
       61 catggtctgc agtgcgcacc aaagaggcca ccccaaaatc ggatagtgcc gctaaaaagg
      121 ctgctccgca aatgggcgcc aacctgtttc cttttgtagg attcggggcc aaggaaatgc
      181 cgaagcagga gacactgctg atcaaaaatg ctatggtatg gaccagcgaa aaagaaggcg
      241 tgctgaaaga aaccgatgtg ctggtgaaga atggtaagat tgctgccgtg ggtaagaacc
      301 tgagtgatgc cagtgcccgt gtgatagatg gtaccgggaa gcacctgagt gccggcatca
      361 ttgatgagca cagccacatt gccacggcca gcatcaacga aggcggacag agtgttactt
      421 ctgaagtgcg catcaaagac aaccttgatc cggatgatat caatatctat cgccagttga
      481 gtggtggtgt tactacctca cacattctgc atggcagtgc caataccatt ggtggtcaaa
      541 cccaactcat caagttgcgt tggggtgcca acgacgaagg cctgatgttc cagaactggg
      601 atcccttcat caagtttgct ttgggtgaaa acgtgaagcg caccacagcc actaccggca
      661 atacccgctt ccccgatacc cgtatgggcg tggagcaggt gctggtagat gctttcaccc
      721 gtgccaaaga ttatgaagcc gccatgaagg ccaataaagc cggcacccgt cgcgacctgg
      781 aactggatgc gctggtggag atcatgaacc agaagcgctt tatcacttgc cacagttatg
      841 tagccagtga aattgtaaac accatgcggg tggccgagca gtttggattt aagatcaaca
      901 ccttcaccca cattttggaa ggctataaag tggctgataa gatgaaggca catggtgcca
      961 atgcatccac cttcagcgac tggtgggcct acaaactgga agtgcaggat gccattcctt
     1021 acaatgctta tatcatgaac aaagtgggac tgaatgttgc catcaacagt gatgacgctg
     1081 aaatggcccg ccgcctgaac caggaagccg ccaagagtgt gaagtatggt ggattgaccg
     1141 aagaagaagc aatgaacatg gtgaccatca acccggctaa aatgttgcat gtggctgatc
     1201 gtgtgggttc catcaaggtg ggcaaggatg ctgacctggt attgtggagc gacaacccgc
     1261 tgagcattta tgccaagtcg atgtacacca ttgtagatgg aacggtgttc ttcgatcggg
     1321 aaaaggatat gcaggtgcgc aagcaggtgc aggacgaacg tacccgtctc atcaggaaga
     1381 tggtgggcga gaaaggcgcc ggccgtccta ctattgcagc ccagcccagc tacaaactgg
     1441 tacacacttg cggcgatcac agccacaaga tgggcctgct ggaattggat gagtatgatt
     1501 tggaaacctc tgtagcagaa atgaaataat agttcacaag ttccaaagtt cactcgttca
     1561 caagttctga aaacgttcat caaagcttca atgcgatggc aactattaag cgcttcgaag
     1621 acatactatc atggcaaaag gcaagggagt tgaacaggat tctaggttcc ttgattgaca
     1681 gt
//
LOCUS       DATIQF010000759         1869 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_285460,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000759 DATIQF010000000
VERSION     DATIQF010000759.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285460"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            297..812
                     /locus_tag="VLL95_13030"
     CDS             297..812
                     /locus_tag="VLL95_13030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39831.1"
                     /translation="MPAADKPVAAQNQLIGLSRKAIDVLIIGSLYVLLVLSVGYAGYQ
                     LIFDVVENFVKHPARDEFPFILTFSEHIFLYFLPVFILFGLMNYYKFELRTYLLNNYE
                     SSKSGEKPLHLSKKLFFSNVLSYTSLKLIEELFFDFSKTNAMQLIAIGVFYFLLVAFV
                     LLQAAGSKSEK"
     gene            980..>1869
                     /locus_tag="VLL95_13035"
     CDS             980..>1869
                     /locus_tag="VLL95_13035"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR39832.1"
                     /translation="MRILVLFFSMLPIAFLGQAQKLKALVGGTMIDGYGGKPLRNSII
                     VVEGERIKAIGQVGTMTIPKGAEVISTEGMTVMPGMWDMHVHLMINGHSDYAHWDSTY
                     LNDFEKVIMPSSAHQLLMAGVTSARDLGGPLEPSLRVRDRVNKGEIPGPTLYMSGPFI
                     QKKPYPGTEAFRWGVNGVEDAREKIRTLAKAGVDLIKLIDQDEMTMEEVMAVVDEAHK
                     HQLKVVGHAHRPEEIRRGLKAGVDCFEHTGLAAAPEYPADIIEMIRERTAKMNLGPLF
                     WTPTVEGLYNYEYVINNPEHL"
BASE COUNT          463 a          424 c          483 g          499 t
ORIGIN      
        1 tatattttga tggttccaaa atcaagcagg gttggagaga agtctttctt cagtttgtcg
       61 ctggcctttc gctggctttt gatggctgat ataagtgaac tgcggtaaaa aacaggaacg
      121 ttgaattgct tcatggaaca aaagtaacca gcaattctgt taggcaatcg ctatttattg
      181 cggcggcgcg gtcattaatc tcaagccggt gtccatccta ttctttattt ttagatggga
      241 taagtgattt gggcactttt cccgatttac caccctcaat gcaaatgaat atggaaatgc
      301 cagctgctga taagcctgtc gccgcacaaa accaattgat aggtctttcc cggaaagcca
      361 ttgatgtcct gatcatcggg tcgctttacg ttttgttggt cttatcggtg ggctatgccg
      421 gctaccagtt gatcttcgat gtggtagaga attttgtcaa gcatccggcc cgggatgagt
      481 ttccattcat cctcaccttt tcagagcata ttttcctcta tttcctcccg gtgttcatct
      541 tgtttgggct catgaattat tacaagttcg agttgcgtac atacctgctg aataattacg
      601 aatcaagcaa gagcggcgaa aaacccctgc acctcagcaa aaaacttttt ttctccaatg
      661 tattgtccta cacatcgctc aaattgattg aagagttgtt tttcgatttt tcaaaaacca
      721 atgccatgca gttaattgcg attggtgttt tctattttct gttggtagct tttgtactgc
      781 tgcaggcggc cggcagtaaa tcagaaaaat aattgcatcg cggcgtgtct cacactgcgc
      841 ccctggccta atttcaggag agtcctggtc ccgtttatcg gttggcaggt ttttggacaa
      901 ttgaccggcc attcgccggt agtgtttgtg aacatatgtt caggaaaacc tatattgaat
      961 tcaattcaat tgcattgcca tgagaatact ggttcttttt ttcagcatgc tgccaatcgc
     1021 ttttttgggg caggcacaaa aactcaaagc cctggtgggc ggcaccatga tcgatggtta
     1081 tggcgggaag cctctgcgca acagcatcat agtggtggaa ggggagcgca tcaaagccat
     1141 tggacaggtg ggcaccatga ccattccgaa aggcgccgaa gttataagca ccgaaggcat
     1201 gacggtgatg cccggcatgt gggacatgca cgtgcatctc atgatcaatg gccacagtga
     1261 ttatgcgcat tgggacagca cctacctcaa cgattttgag aaagtcatca tgccttcatc
     1321 ggctcaccaa ttgctgatgg caggggtaac cagtgcccgt gacctgggcg gcccgctgga
     1381 accgagcctc agggtgcgtg accgtgtgaa caagggagaa atcccgggcc ccactttgta
     1441 catgagcgga ccgttcattc agaaaaagcc ctaccccggt acagaagcgt ttcgctgggg
     1501 cgtaaatggg gtggaggatg cccgggaaaa aataaggacg ctggccaagg caggtgttga
     1561 tctgatcaaa ctgattgacc aggacgaaat gaccatggag gaagtgatgg ctgtggtgga
     1621 tgaagcccac aagcatcaat tgaaggtggt ggggcatgct cacaggcctg aagaaattcg
     1681 ccgcggcctg aaagccggtg ttgactgctt cgagcatacg ggtttggccg cagcgccaga
     1741 gtatcctgcc gatatcattg aaatgatcag ggaacgcacc gctaaaatga atcttgggcc
     1801 gctgttttgg acgcctactg tagaaggcct ttacaattat gagtacgtga tcaacaaccc
     1861 ggagcatct
//
LOCUS       DATIQF010000760         2607 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_209941,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000760 DATIQF010000000
VERSION     DATIQF010000760.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2607
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209941"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..826)
                     /locus_tag="VLL95_13040"
     CDS             complement(<1..826)
                     /locus_tag="VLL95_13040"
                     /inference="COORDINATES: protein motif:HMM:NF017072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39833.1"
                     /translation="MSKPIISGSFNYETLEETLDVKSKGAELFIGVPKEHAFQENRVG
                     LIPEAAGVLVANGHDVWVETKAGAESGYTDKDYAEAGAKIKYDHKEIYNCDVLVKSAP
                     VVDEDLSLLKPNQFIISPIHLSVMKASILESMMEKKITGLSFENLKDDSGTYPIVRSM
                     SEIAGSASMLIGGHYLSQGGHGKGILLGGISGIPPTKVIILGAGVVGEFAARAALAMG
                     SSVKVFDNNVYRLKRLQDTLGHRVWTSVIEPRILAKQLKTCEIAVGALGSESGRTPV"
     gene            complement(895..1314)
                     /gene="tsaE"
                     /locus_tag="VLL95_13045"
     CDS             complement(895..1314)
                     /gene="tsaE"
                     /locus_tag="VLL95_13045"
                     /inference="COORDINATES: protein motif:HMM:TIGR00150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HSR39834.1"
                     /translation="MVFDYQHHQIQEAAQWVLQHAGHARVIAFYAPMGAGKTTLSGAV
                     MHALGSTDHAASPTFSIINEYLLPNGDTLYHMDWYRLKDEEEALAAGVEDALYSGHRC
                     LVEWPEKAEALLPPDTCMMAIDITGPETRQLKVMNEQ"
     gene            1487..>2607
                     /locus_tag="VLL95_13050"
     CDS             1487..>2607
                     /locus_tag="VLL95_13050"
                     /inference="COORDINATES: protein motif:HMM:TIGR01494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HSR39835.1"
                     /translation="MVKKIEWKVDGITCANCALSINKALTNQGMQNVSVNAITGDVSF
                     ELVEGEASETAAARKVESLGYAVKSSEAAPVEVVKNFRISKYMLRFWITLPFTLLLML
                     HMVPGLHWHWLMNPWVQFGLALPVYVVGMEFFGRSAINSIRSGIPNMNVLIALGSTAA
                     FLYSTYGLFTHRPEDFLFFETAASILTIVFFGNWMEDFSVARTQREIKKLTRQQKVMA
                     NMIAYDDKHQEQVFPVDSASLRVGDLVLIRTGEQVPAYCKLLSGDAEVSEALLSGEAT
                     PVFKKQGDALIGGSVVVNGNVKAYVTAVGKDTVMSGIQEMMKKAQTEKPPVQQLADRI
                     SAWFIPAVLAVAAITLLGNLFIGGHSFTESLMRSVAVLV"
BASE COUNT          622 a          638 c          690 g          657 t
ORIGIN      
        1 ccaccggggt gcggccactt tctgaaccca aagcccccac cgcgatttcg caggttttga
       61 gttgcttggc cagtatgcgg ggttctatca ccgaagtcca aacccggtgg ccaagtgtat
      121 cctgcaggcg tttcagccgg tacacgttat tgtcgaaaac cttaacactg ctacccattg
      181 ccagtgcggc ccgggcggca aactctccta ccacaccagc ccccaggata atgaccttgg
      241 taggcgggat gccactgatg ccacccagca aaatgccttt gccatggcct ccctggctca
      301 ggtaatgccc gccaatgagc atgctggcgc tgcctgctat ttcgctcatg ctgcgaacga
      361 tgggataagt accgctgtcg tctttgaggt tttcaaaact caagccggtg atctttttct
      421 ccatcatgct ttcgaggatg gaagccttca tcacactcag gtgaatgggc gaaatgatga
      481 actggttggg cttcagcaat gaaagatctt catccaccac cggcgcactt ttcaccagca
      541 catcgcaatt ataaatttcc ttgtgatcgt attttatttt ggcgcctgcc tctgcataat
      601 ctttgtcggt atagccgctt tcagcacccg ccttcgtttc cacccataca tcatggccat
      661 tggctaccag cacgccggca gcctccggaa taaggcctac cctgttttcc tggaaagcat
      721 gctctttagg cacaccaata aacaattcag ctcctttaga ttttacatcc agggtttctt
      781 ccagcgtttc gtagttgaat gatccactga tgattggctt cgacatgagt aagactgaga
      841 attaatgtta cgggaatact gttattacag aagaaaatgg aatggaggct aaagttactg
      901 ttcgttcatc actttgagtt ggcgggtttc cggtccggtt atgtcaatag ccatcatgca
      961 ggtgtccgga ggcaacaagg cttctgcttt ttctggccac tccaccaggc agcggtggcc
     1021 gctgtacagg gcatcttcca caccggcagc cagggcttct tcttcatctt tcagccggta
     1081 ccagtccata tggtacaagg tgtcgccatt gggaagaagg tattcattga tgatagaaaa
     1141 agtggggctg gcagcatggt cggtactgcc caatgcatgc atgacggcgc ccgaaagcgt
     1201 ggtcttgccg gcacccatgg gggcataaaa ggcaatgacc cgggcatgtc cagcatgttg
     1261 gagtacccat tgggcggctt cttgtatttg atgatgttgg tagtcgaaaa ccatggggtc
     1321 gcaagttagc atttctcttc caaatgctga ttttcaatgc ctcatgcctc ccattctccc
     1381 tgcattttcg aaaagcagaa aagcggggtt cgttgcagcg gagttgcagt aataccagaa
     1441 ttgcaacaga atttttgcaa cagagagggg taaatttgca acatctatgg taaagaagat
     1501 cgaatggaag gttgatggta ttacctgcgc caactgtgcg ctcagcataa ataaagccct
     1561 caccaaccaa ggcatgcaaa atgtatcagt gaacgccatt acaggcgatg tgagttttga
     1621 attggtggaa ggcgaagcat ccgaaacagc ggcggcccgg aaagtggaaa gcctcgggta
     1681 tgcagtcaaa agttcggagg ccgctcccgt ggaagtggta aagaatttca ggatatcgaa
     1741 gtacatgctt cgtttctgga tcacgctgcc atttaccttg ttgctcatgc tgcacatggt
     1801 gccgggcttg cactggcact ggctcatgaa tccttgggtg cagtttggac tggcattgcc
     1861 cgtttatgtt gtagggatgg aattctttgg aaggagtgcc atcaattcca ttcgcagcgg
     1921 cattccaaac atgaatgtgt tgattgcact tggttccacc gctgcctttt tgtacagtac
     1981 ctacggattg tttacgcacc gccccgaaga cttcctgttt ttcgaaaccg cggccagcat
     2041 cctcaccatc gtgttttttg gcaactggat ggaggatttc agcgtggcaa gaacacaacg
     2101 cgaaatcaaa aaactgacca ggcagcagaa ggtgatggcc aacatgatcg cctatgatga
     2161 caagcaccag gagcaggttt tcccggtgga cagtgcttca ttgcgtgtag gtgacctggt
     2221 actcattcgc actggtgagc aagtgccagc gtactgcaaa ttgctgagcg gcgatgcgga
     2281 agtgagtgag gctttgctga gtggtgaagc gaccccggtt ttcaaaaagc aaggcgatgc
     2341 attgattgga ggaagtgtag tggtgaacgg caacgtgaag gcctatgtaa ctgctgtggg
     2401 caaagacact gtaatgagtg gcatccagga aatgatgaaa aaggcgcaga cggaaaagcc
     2461 tccggtacag caattggccg acaggatcag cgcttggttt attccggcag tgctggctgt
     2521 ggcagccatt accctgctgg gcaatctctt tattggcgga cacagtttta cagaaagcct
     2581 gatgcgcagc gtagccgtat tggtgat
//
LOCUS       DATIQF010000761         2013 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_133895,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000761 DATIQF010000000
VERSION     DATIQF010000761.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2013
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133895"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            198..572
                     /locus_tag="VLL95_13055"
     CDS             198..572
                     /locus_tag="VLL95_13055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39836.1"
                     /translation="MLAIFLLTVYMISTTEAYQLLKVPALVVHFIQHAQEDPELDVVN
                     FLRMHYAEDQRMTLDWQQDMQLPFKTHEDGMSLLPLCYEPMMFQVLVQHPATDKERIQ
                     NDYYLNSAPGIYAADIFQPPKV"
     gene            750..>2013
                     /locus_tag="VLL95_13060"
     CDS             750..>2013
                     /locus_tag="VLL95_13060"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSR39837.1"
                     /translation="MVLGLIIAGIIQLKKLPIDALPDITSNQVQIITVSPALAAPEVE
                     RLVTFTIEQFCSNIQGITEMRSISRFGLSVVTLVFDDHSDIYRARQQVAERLTYIKDE
                     IPQGAGSPTLAPLTTGLGEVYQYIVKPAPGYESKYSLADLRSIQDWVIRKQLLGTPGV
                     ADVSSFGGHLKQYEVAFKTEKLNSMGLTVSDVFAALQKNNQNSGGAYIEKAGQILFIR
                     TEGLIKDLSQIENIVLKNSANGTPVFVRDVATVQLGKAVRYGALVDGSRGEVSGAVVL
                     MLKGANGMEVVETVKKRMEVIKKTLPEGVIVETFYERSKMVQRSIDTVSKNLLEGALI
                     VLFVLVLFLGNVRAGLIVASVIPLAMLFAIIMMNFFGVSGNLMSLGALDFGLIVDGAV
                     IIVEAVLHQLHHKKIPNEVTVLPQNQLDH"
BASE COUNT          558 a          454 c          486 g          515 t
ORIGIN      
        1 ggcacagagg acacctgtcc gtacggagat atttccgggt tcaggccttg ctgggcaaat
       61 acgggaaatg agaagaacag caggctggct ataaacaaaa ggcctttcat aacatgatga
      121 tttgcccgta aagtaggcaa taattgaaat cctgatcaca tcagcgcaaa gcgttaattt
      181 tggcaactat gcgaagaatg ctggcgatat tcctcctgac agtttacatg ataagcacta
      241 cagaagctta ccaactgctc aaggtgcctg cattggtggt tcatttcatt caacatgccc
      301 aggaagaccc ggaacttgat gtggtcaatt ttctgcgcat gcattatgcc gaagatcaaa
      361 gaatgacact tgactggcaa caggacatgc aattaccatt caaaacgcat gaagatggca
      421 tgtctttact gcctctttgt tatgaaccca tgatgttcca ggtgctggta cagcaccccg
      481 caaccgataa ggagcgtatt caaaatgatt actacttaaa cagcgctccg ggaatttacg
      541 ctgccgacat tttccagcct ccgaaggttt gaaaaaagaa tgaaaaagcc tttggattct
      601 gcccgctttt tcaggctgtt tccttttcta catactatca attttatgat acacagtaac
      661 gtcgtgcttc acgaggttac catcgcatac ctattatgct aaacgcaatc atccattttt
      721 ctatccgcaa caaattgatt gtgggtctga tggttctcgg attgatcatt gccggcatca
      781 tacaactgaa aaagttgccc attgatgcgc ttcccgacat tacgagcaac caggttcaga
      841 ttattacggt aagccctgca ctggctgctc ccgaagttga acgtttggtg actttcacca
      901 ttgagcagtt ttgctccaat attcagggca ttactgaaat gcgctccatc tcaaggtttg
      961 gcctttcagt agtcaccctg gtttttgatg accattcgga catttaccgg gcaaggcagc
     1021 aggtggccga acgcctcact tacattaaag acgaaatacc gcagggggca ggcagtccca
     1081 cattggctcc gctaaccacc ggactgggag aagtatatca atacatcgtg aaacccgctc
     1141 ccggttatga atccaaatat tctctggcag acctgcgctc catacaggac tgggtaatac
     1201 gcaaacaact cctcggcaca ccgggagtgg cagatgtgag cagctttggc ggtcatctga
     1261 agcaatacga agtagcattc aaaacggaga aactcaacag catggggctg acagtatcgg
     1321 atgtttttgc tgcccttcaa aagaacaacc agaactctgg aggcgcctac attgaaaagg
     1381 ccggtcagat attattcatc cgaaccgaag gactcatcaa ggacctgtcg cagattgaaa
     1441 acatagtatt gaagaattcc gcgaacggca ctcccgtttt tgttcgtgac gtagccacgg
     1501 tgcaattggg caaggcagtt cggtatggcg cactggtaga tggatcaaga ggagaggtat
     1561 caggagcggt ggtgctcatg ctgaaaggtg ccaatggcat ggaagtggtg gaaaccgtga
     1621 agaaaagaat ggaagtaatc aagaaaacac ttcctgaagg cgtgatcgtt gaaacctttt
     1681 atgaacggag caaaatggtg cagcgctcca tcgacaccgt aagcaagaac ctgctggaag
     1741 gtgcactgat agtgttgttt gtactggtgt tgttcctggg taatgttcgg gcaggattga
     1801 ttgtggcatc cgttattcca ttggcgatgc tattcgccat aatcatgatg aatttctttg
     1861 gcgtcagcgg caaccttatg agtctggggg cgcttgactt tggattgatt gtagacggtg
     1921 ctgtaattat tgtggaagct gttttacatc agctgcacca taaaaaaata cctaatgaag
     1981 tcaccgtttt gccacaaaat caattggacc atg
//
LOCUS       DATIQF010000762         2894 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_103005,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000762 DATIQF010000000
VERSION     DATIQF010000762.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2894
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103005"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(32..436)
                     /locus_tag="VLL95_13065"
     CDS             complement(32..436)
                     /locus_tag="VLL95_13065"
                     /inference="COORDINATES: protein motif:HMM:NF015180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerC domain-containing protein"
                     /protein_id="HSR39838.1"
                     /translation="MMSDPFFKINWDRLGIAASVACAIHCAVVPLFFTSLPLFGINIV
                     NNKGFEFFMIGVALVVGVLALRHGFRWHHHRYIPMAMFVLGIGLLVGKEFVWGHPLWM
                     VLAAVSCIVGAHFLNYRLCRKANHCHTGDCNH"
     gene            510..1169
                     /locus_tag="VLL95_13070"
     CDS             510..1169
                     /locus_tag="VLL95_13070"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HSR39839.1"
                     /translation="MSAKGKLLFYGVMFLAILAGFYFFLFRGTDNWKSQLPVISYVQP
                     FRFVNQSGDTLNQEALNGKVYVANYFFVTCKGVCPNMNGKLKTVYEAFRSEPGFAIVS
                     HTCQPEVDSLPQLKFYCDSIGADGKQWQFVTGNKLALYKMARESYHIDDPANNVGDIN
                     DQFLHSQFLALVDRQGRVRGIYDGLKQKEVNELKNDIADLLKEKDRGNFVNNLFGNNP
                     Q"
     gene            1194..1613
                     /locus_tag="VLL95_13075"
     CDS             1194..1613
                     /locus_tag="VLL95_13075"
                     /inference="COORDINATES: protein motif:HMM:NF013629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HSR39840.1"
                     /translation="MKDQVADILRKNNLSVTDSRRNILNLFLSHDNSALRHSDIEHSL
                     QGLDRVTIYRTLQAFAEKGIIHSIPGSDGAARYAICRSGCEEGHHHDDHVHFVCVKCG
                     STQCLEDVHVPFVRMPDGFEATKTEMVVSGICANCRR"
     gene            complement(1701..>2894)
                     /locus_tag="VLL95_13080"
     CDS             complement(1701..>2894)
                     /locus_tag="VLL95_13080"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HSR39841.1"
                     /translation="LQSKDRAEREAVYRKIQERRLQDKEGLNELYSKLVEKRQQVAVN
                     AGFANYRDYKFKELGRFDYTPDDCTQFQEGVKQQVLPLVNEIYKHKQQQLGVDTLRPW
                     DLEAEPAGVEPLRPFKTGAELLEKSIAVLERLNPFFADCFRTMQRMGHFDLESRKGKA
                     PGGYNCPLAESGAPFIFMNAAGQMDDVTTMVHEGGHAVHSFLAHPLELTAFKEYPMEI
                     AEVASMAMELFTMDHWEPFFDNADELKRAKLYQLERAITIFPWIATIDKFQHWVYTHP
                     QHSLEERQQAWVAILNEFSTEVLDVSGLEGYRQYSWQRQLHLFEVPFYYIEYGIAQLG
                     AIGLWMQYKQSPQQALSNYMTALSLGGTRTLPELYEAAGLRFDFSPSHIKTLMEFVKE
                     EMDKL"
BASE COUNT          680 a          763 c          745 g          706 t
ORIGIN      
        1 gggccaaata ccaccacgac cctttttccc tttagtgatt gcaatcgccg gtatggcaat
       61 gattggcttt ccggcaaagg cggtaattga ggaaatgcgc tcccactatg caggagacag
      121 cggccagcac catccacaaa ggatgacccc acacaaattc tttgcccacc agcaagccaa
      181 tccccaatac gaacatcgcc atgggtatgt accggtgatg gtgccatctg aatccgtgcc
      241 ggagcgccag cactcctact accagtgcca ccccgatcat gaaaaactca aatcccttgt
      301 tgttgacgat gttgatccca aacaatggga ggctggtaaa aaacagcggc accactgcgc
      361 agtgtatggc acaagccacg gaggcagcaa ttcccaggcg gtcccagttt atcttgaaga
      421 aaggatcgga catcatttaa gcaactattt tgcaacagta ttgcaaatgt agtgttttta
      481 ctgcgaccta aaggataact ttgtgcatca tgagtgcaaa agggaagtta ttgttctatg
      541 gggtgatgtt tctggccata ctggccggct tttacttttt cctgttcaga ggtaccgata
      601 actggaagag ccagcttccg gtgatcagtt atgtacagcc attccggttt gtcaaccagt
      661 cgggcgatac gctgaaccag gaagcgctga acggcaaagt atatgtggcc aactactttt
      721 tcgtgacctg caaaggcgtt tgccccaaca tgaacggcaa actgaaaacc gtatatgaag
      781 cttttcggtc cgaacccggg tttgccattg tgagccatac ctgccagccc gaagtggaca
      841 gcctgccgca gctcaaattt tattgcgaca gcattggcgc cgacgggaaa caatggcagt
      901 ttgtgaccgg caacaaactg gcgctgtaca aaatggcccg cgaaagctat catattgacg
      961 accctgccaa caatgtaggc gacatcaatg accagttcct gcattcccag tttttggcgc
     1021 tggtagaccg gcaaggcagg gtgcgtggca tttatgacgg actgaaacaa aaggaagtga
     1081 atgaactgaa gaatgacatc gctgatttgc tgaaggaaaa agaccgtggt aatttcgtca
     1141 acaacctttt cgggaataat ccccaataaa cctcctgaac aggcacccac cccatgaaag
     1201 accaggtagc ggatatactg agaaagaaca acctgagtgt gacggacagc cggcgcaaca
     1261 tcctcaatct cttcttgagc catgacaaca gtgcgttgcg ccacagcgat atcgagcatt
     1321 cgctgcaggg actcgaccgg gttaccattt accggaccct gcaggccttt gccgaaaaag
     1381 ggatcatcca ttccatcccg ggatcggatg gggcggcgcg ttatgccatt tgccggagtg
     1441 gttgcgaaga agggcatcac cacgatgatc atgtgcattt tgtttgtgtg aaatgcggat
     1501 ccacccaatg cctcgaggac gtgcatgttc cttttgtacg catgcccgat ggatttgaag
     1561 ccaccaagac tgaaatggta gtgagtggca tttgtgccaa ttgccggcga tagatgaaag
     1621 cattgaaagt atcataagaa aaaggcgcaa gaccggttgg tcatgcgcct tttcaattct
     1681 tgctattgca gttccttttt ttacaatttg tccatttctt cttttacaaa ttccatgagc
     1741 gttttgatgt ggctgggtga aaagtcgaaa cgcaaaccgg ccgcttcgta caactccggc
     1801 agtgtcctgg tgcctcccag gctcagggcg gtcatgtagt tgctgagtgc ctgttggggg
     1861 ctttgcttgt attgcatcca caggcctatg gcaccgagct gcgcaatacc gtattcgatg
     1921 taatagaagg gcacttcaaa caaatgcagc tgtcgctgcc agctgtactg ccgataccct
     1981 tcgaggccgc tcacatccag cacttctgta ctgaattcgt tcaggatggc cacccaggcc
     2041 tgctgtcttt cttccaggct gtgttgcgga tgggtataca cccagtgctg aaacttgtcg
     2101 atggtggcga tccatgggaa gatggtaatg gctctctcca gctggtacag cttggcccgc
     2161 ttcagttcat cggcattgtc gaagaagggt tcccaatgat ccatggtaaa cagttccatg
     2221 gccatgctgg ccacttcggc tatttccatc ggatattctt tgaaggccgt aagttccagc
     2281 ggatgcgcca ggaagctgtg cacagcgtgt ccgccttcgt gcaccatggt ggtcacgtca
     2341 tccatctgcc ctgccgcgtt catgaagatg aacggagcgc cgctttcagc cagtgggcaa
     2401 ttataaccac cgggggcttt ccctttcctg ctttcgaggt cgaaatgccc catgcgctgc
     2461 atggtacgga agcaatcggc aaagaaagga ttgaggcgtt ccaacaccgc gatgctcttc
     2521 tccagcaatt cggcaccggt cttgaatggt cgcaacggct ccacgccggc gggctccgct
     2581 tccaggtccc aggggcgcag ggtatcgacg cccaactgct gttgcttgtg cttgtatatc
     2641 tcgttcacca atggcagcac ctgctgcttc acgccttcct ggaactgtgt gcagtcgtcg
     2701 ggcgtatagt cgaagcggcc gagttccttg aacttgtaat cgcggtagtt ggcaaagccg
     2761 gcgttcaccg ctacctgctg gcgtttttcc accagtttgc tgtacagctc gttgagtccc
     2821 tctttgtcct gcaaacggcg ttcctgtatt ttacgataca cagcttcccg ttcagcccgg
     2881 tctttgcttt gcaa
//
LOCUS       DATIQF010000763         1803 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_103017,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000763 DATIQF010000000
VERSION     DATIQF010000763.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1803)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1803)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103017"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            410..1279
                     /locus_tag="VLL95_13085"
     CDS             410..1279
                     /locus_tag="VLL95_13085"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase family protein"
                     /protein_id="HSR39842.1"
                     /translation="MMKVPSVLVIGGTTFDHIVYLNELPTGVPATIHQCRFQETTGST
                     GTGKAVALHQLGVPVHLVSACGKDSWGSEIETYLQSTGLSFHLFEDPKGTERHVNLMD
                     KEGKRISIFITNSAEEIELPENYLQQQLAAHDVIVLNIIAYCRPWAAVVAKCGKPVWT
                     DLHDYDGVSSYHQPFIDAAQYIHLSSDNLVDHRSLMEQLVDSGKKLVVCTHGKAGASL
                     LSKETGWIEVAAEQVPIVDTNGAGDNFFAVFVYGWLKGKDLVSCLQFGTRAAATCVQS
                     SYIVSPALDARLL"
     gene            1350..>1803
                     /locus_tag="VLL95_13090"
     CDS             1350..>1803
                     /locus_tag="VLL95_13090"
                     /inference="COORDINATES: protein motif:HMM:NF012593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HSR39843.1"
                     /translation="MNKNRLTYYILGAMIAGIIAGLIVNKSASPEFVTSFSTNIKLLA
                     TIFIRLVQMIIAPLVFTTLVVGIAKLGDLKAVGRVGGKALLWFITASLISLLIGMVMV
                     NFFQPGAGMNLGSVDASGVADVVGKTKGFSLQNFVEHIVPKSVIEAMAT"
BASE COUNT          484 a          423 c          431 g          465 t
ORIGIN      
        1 cgatctccaa atgaccgtgc agaaaacgca taccgtgttt tgctacattt tgggttagta
       61 aaatatcccg agcaggcaat caaacattac ctggcaggaa aaactcagtt ttgaaagtag
      121 gaaagggtgt aaggtgtgcc aatcacgttt atatatcctg gaccaacatt aaggtccatg
      181 aattccaatc gatgcgaaat taatgttatc acaacaataa cagcaaaaaa atcttttccg
      241 actttattac ctgtccccgc agatatcttt cttgcagaag ggagtcgcac tttaagtaaa
      301 tgcaaagaac agtgcaactg gaggtcattc aatacaaaat gatgtctttg attttcactt
      361 tgcatctccg agattgatta ttttgattgg gttttgaagc caaaaaaaaa tgatgaaagt
      421 tccttctgtt ctggtgatag gcggcaccac tttcgaccac atcgtttacc tcaatgaatt
      481 gcctaccggc gtacctgcca ccattcatca atgccggttc caggaaacta ccggaagcac
      541 cggcaccggg aaagcggttg ccctgcacca gttgggcgtg cccgtgcacc tggtaagtgc
      601 ctgcggaaag gatagttggg gaagtgaaat agaaacctac ctgcagtcaa ccggtttgtc
      661 gttccatcta tttgaagacc cgaaaggcac agagcggcat gtaaacctga tggataagga
      721 gggcaagcgc atttccattt ttattaccaa cagcgctgaa gaaattgaac tgcctgaaaa
      781 ttacctgcag caacaactgg cagcccacga tgtaattgtc ctcaacatta ttgcttattg
      841 ccggccttgg gcagcagtcg tggccaaatg tggcaaacct gtttggaccg acctgcacga
      901 ttacgatggt gtcagcagtt accaccaacc ttttattgat gctgcccaat acatccacct
      961 cagcagcgat aatctagttg atcaccgttc gctcatggag caacttgtgg attcaggcaa
     1021 aaaactggta gtatgtaccc atggcaaggc aggcgccagt ttattatcta aagaaacagg
     1081 gtggatagag gtggcggcag aacaggttcc gatagtagac acgaatggcg ctggcgataa
     1141 tttttttgcc gtctttgtgt atggatggct gaaaggcaaa gacctggtca gctgcctgca
     1201 atttggcaca agagccgctg ccacttgtgt gcaatcttcg tacatcgttt caccagcgct
     1261 ggatgcccgc ttgctgtaat gcacagccaa ttgtggttca aaaagcctaa agccttactt
     1321 tcaccgccat attgcttgcc tcttatatta tgaataagaa ccgcctcacc tactacattc
     1381 tcggagcgat gattgccggc attatcgcag gcctgattgt gaacaaaagc gccagccccg
     1441 aatttgtaac cagtttcagt accaatatca agttgctggc caccatcttt atcaggctgg
     1501 tgcaaatgat cattgcgccg ctggtgttca ctacactggt ggtaggaatc gccaaactcg
     1561 gcgaccttaa agcagttggt cgtgtgggtg gcaaagcctt gctgtggttc atcaccgcat
     1621 cgctgatatc attgctcata ggcatggtga tggtcaactt tttccagccg ggtgccggca
     1681 tgaacctggg cagtgtggat gccagtggcg tagctgatgt agtgggcaag accaagggct
     1741 tttcgttaca gaattttgta gagcacattg tacccaaaag tgtcattgag gccatggcca
     1801 cca
//
LOCUS       DATIQF010000764         2586 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_240328,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000764 DATIQF010000000
VERSION     DATIQF010000764.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2586
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240328"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..311
                     /locus_tag="VLL95_13095"
     CDS             <1..311
                     /locus_tag="VLL95_13095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39844.1"
                     /translation="EGLGFFADSVMLLFPDGNSVHATKDSVMAMTKAYRNSYSSLHNE
                     VDAVIPLKENKNGERWVLVWGEEYHEKNGKKDSVLLHELWRFNKDGKINMMQQFAGKD
                     "
     gene            complement(634..1218)
                     /locus_tag="VLL95_13100"
     CDS             complement(634..1218)
                     /locus_tag="VLL95_13100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39845.1"
                     /translation="MMIKRKQLLLFSLLWITALPVWAQQNAPAAPAEHTKPFKPFHSL
                     GVAIGHAHSFKGVDENGGRKNMALPYFGLDYNYQFAPKWALGLHTDFINETFVVEKTE
                     HDGTVEELERSRPIAPALMAMYNLSHRWKLGFGVGGEFAKEGNFWLNRAAIEYACPIR
                     KGWEVFGAFQYDIRWSAYDTWTIGLGIAYGFGEE"
     gene            complement(1351..>2586)
                     /locus_tag="VLL95_13105"
     CDS             complement(1351..>2586)
                     /locus_tag="VLL95_13105"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HSR39846.1"
                     /translation="PGTPEGMKKEDPTIATLLKAQGYTTGQFGKNHLGDRDDMLPTAH
                     GFDEFFGNLYHLNAEEEPENPDYPKDPAFKKQFGPRGVIHSFADGRMEDTGPLTKKRM
                     ETIDEEVNTKAMDFMERSAKAGKPFFLWWNSTKMHIFTHLKEGVDGKTGLGIYADGMV
                     EHDRQIGLLLAKLKELGLDENTIIMYSTDNGAETFTWPDGGTTMFRGEKNTQWEGGFR
                     VPTLIKWPGTIKPGTVVNDISAHEDVLATLVAAAGDKTAKEDLLKGRTINGRNYKVHL
                     DGYDLGPALRGEAEWPRKEFIYWTDDGSVAALRYGNWKITFLEQQAEGLKVWQEPFVT
                     LRAPKITNLRMDPFERAEEENAMGYQRWYMERMFMIAPAGAYVARWLQSFKEFPPRQK
                     PGSFNLERVMEAVMQPQGN"
BASE COUNT          584 a          664 c          694 g          644 t
ORIGIN      
        1 aagaagggct cggctttttt gcggatagtg tgatgctcct ttttcctgat ggcaacagcg
       61 tgcatgccac aaaggatagt gtaatggcca tgacaaaagc ctaccgaaat agttacagca
      121 gcttgcacaa cgaagtggat gcggtaattc cactgaagga gaacaagaat ggtgaacgtt
      181 gggtattggt atggggcgaa gaataccatg aaaaaaatgg caagaaagat tctgtattac
      241 tgcatgaact gtggcggttc aacaaggacg gcaagatcaa catgatgcag cagtttgccg
      301 gcaaagacta aataccgtct ttcaatggtg tcataaacca ggaagagcag tcttacacaa
      361 aggctgctct ttttgttgat gactgtatct gcgtccatct acgccatctg cgggaaattt
      421 ttccagcgcc tccctcaaac aattcttaat ggcattgatc ccggtgattc ttccaccatt
      481 gaaccacaac gccagcacga cacagaggtg cacaacgccg tgatacactg tgtcgcacag
      541 tgtatctgtg gtttatgcag ttaaaagcgg cttcatttta cgggcatcgg ctattgaaag
      601 cagttttggc tcatggagtt ggaaaagaca ttttcactct tccccaaacc cgtacgcaat
      661 gcccaggcca atcgtccagg tatcataagc gctccagcgg atatcgtatt gaaaagcgcc
      721 aaacacttcc caaccttttc ggatggggca ggcgtattca atggcagcac ggttgagcca
      781 gaagttgcct tccttggcaa attcgccacc cacgccaaaa cccagtttcc agcggtggct
      841 caggttgtac atggccatca gcgccggggc aatggggcgg ctgcgttcca gctcttccac
      901 ggtaccgtca tgttcagtct tttctaccac aaaggtttca ttgatgaaat cggtatgcag
      961 tcccagcgcc catttgggag caaactggta attgtagtcg aggccaaaat agggcagcgc
     1021 catgttcttg cggccgccat tttcatccac ccctttgaaa gagtgggcat gcccgatggc
     1081 aacgccgagg gaatgaaatg gcttgaaggg tttggtatgt tcagccggtg ctgcaggggc
     1141 attttgttgt gcccatacag gaagcgccgt gatccacagc agtgaaaaca gaagcagttg
     1201 tttgcgtttg atcatcatcg ggaggatttg ataacagaag gtaggattaa cttttggaaa
     1261 cgcagggtga ttgcccttaa aaagaatccc ctgcagctgc acaagcaaca acaagggatt
     1321 ccttttcaaa cggaaccatt tacctataca ttaattaccc tgtggttgca tcaccgcttc
     1381 catcactctt tcgaggttga agctgccggg cttttgccgc ggagggaatt ctttaaagct
     1441 ttgcagccac cgggccacat aggcaccggc gggagcaatc atgaacatgc gctccatata
     1501 ccagcgctgg tagcccatgg cattttcttc ttcggcccgc tcaaaggggt ccatgcgcag
     1561 gttggtgatc ttgggtgccc ggagtgttac gaaaggctcc tgccaaactt tcaatccttc
     1621 agcctgctgc tccaggaagg tgatcttcca gttgccataa cgcagggcgg ccacgctgcc
     1681 atcatcagtc cagtagatga actctttgcg gggccattcg gcttcgccac gcagggcagg
     1741 gcccaggtcg tatccatcca ggtgcacttt gtagttgcgg ccattgatgg tgcggccttt
     1801 cagcaggtct tccttggcgg ttttgtcgcc ggcagcggct accagggtgg ccagcacatc
     1861 ttcatgagcg ctgatatcgt ttaccacggt gcccggcttg atggtgcccg gccatttgat
     1921 gagggtgggc acccggaaac caccttccca ctgggtattc ttttcgccac ggaacatggt
     1981 ggtgccaccg tcgggccagg taaaggtctc ggcgccatta tcagtagaat acatgatgat
     2041 ggtattttca tccaaaccca gttctttcag cttggccagc aacagcccga tctggcggtc
     2101 gtgttccacc atgccatcgg cataaatgcc caggccggtc ttgccatcca cgccttcttt
     2161 caggtgggtg aagatgtgca tcttggtgga gttccaccac aagaagaaag gcttgcccgc
     2221 cttggccgaa cgctccatga aatccatggc cttggtgttc acttcttcgt caatggtttc
     2281 catgcgcttt ttggtcaatg ggccggtgtc ttccatgcgg ccatcggcaa agctgtggat
     2341 cacaccacgg ggtccgaact gctttttaaa ggccgggtct ttgggatagt cggggttttc
     2401 gggttcctct tccgcattga ggtggtagag gttgccaaag aattcatcga agccatgggc
     2461 cgtgggcaac atgtcatcgc ggtcgcccag gtggttcttg ccaaactgtc cggtggtata
     2521 gccttgcgcc ttcagcaggg tggcaattgt ggggtcttct tttttcatcc cctcgggggt
     2581 accggg
//
LOCUS       DATIQF010000765         1837 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_210011,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000765 DATIQF010000000
VERSION     DATIQF010000765.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210011"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1837
                     /locus_tag="VLL95_13110"
     CDS             <1..>1837
                     /locus_tag="VLL95_13110"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HSR39847.1"
                     /translation="TMTKWFTLLVAGLGMTANLEAQDIRNNPTSNHGNKFEQLGTILP
                     TPNEYRTASGAPGPRYWQQRADYKISCELDEAKLELRGKETITYFNNSPDVLTYLWLQ
                     LDENEHDPNSDNNVFDESGLRPVMSTAELNMINRRALLEGHGDKIDYIKDAAGKPLKY
                     TINQTMMRIDLPAPLKPGQQYVLNIGWHYKIPDRMTLGGRGGYEYFPKDGNHVFTMAQ
                     WFPRLCVYIDYQGWQNHQFTGRGEFALVFGNYDVEMTVPADHVVGGTGECQNYQQVLS
                     PAQFTRWQQAQTAKDVVEVVTLDEAKKAEPNKATAKKTWKYKASMVRDFAWTSSRKFI
                     WDAMPTYVEGKKVMAMSYYPKEAYNLWRKYSTKVVAHTLKSYSKFSIPYPYPVAISVE
                     ASNGMEYPMICFNNGRCAKDGTYTEATKYAMIGVIIHEVGHNFFPMVVNSDERQWSWM
                     DEGLNTFLQYLAEELFDNKYPSRRGPAWAIVDYMKLPKDQLEPIMTNSENIIQFGPNA
                     YSKPATGLNILRETIMGRDLFDFSFREYARRWAFKHPTPADLFRTMEDASSVDLDWFW
                     RGWFYSIDPCDISLDTVKSYKVNVENPTATMGRRGGSDTIRVAKP"
BASE COUNT          481 a          527 c          466 g          363 t
ORIGIN      
        1 gaacaatgac aaaatggttt acgctgctgg tcgctggcct tggaatgacc gcgaacctgg
       61 aagcccagga catccgcaac aatcccacca gcaaccacgg caacaagttt gaacaattgg
      121 gtaccatcct gcccacgccc aatgaatacc gcacagccag cggggcgccg ggtcccaggt
      181 attggcaaca acgggccgat tacaagatca gttgcgaact cgacgaagcg aagctcgaac
      241 tgcggggcaa ggaaaccatc acctatttca acaacagccc ggatgtactc acctacctgt
      301 ggctgcagct cgatgaaaac gagcacgatc ccaactccga caacaacgtg tttgatgaga
      361 gcggtctgcg gcctgtgatg agcacagccg aactgaacat gatcaacagg cgtgccttgc
      421 tcgaaggcca tggtgacaaa atcgattaca tcaaggatgc cgccggcaag ccgctgaagt
      481 ataccatcaa ccaaaccatg atgcggattg acctgcctgc cccgctgaag cccggtcagc
      541 aatacgtgct caacattggc tggcattaca aaatccctga tcgcatgacc ctcggtggcc
      601 gtggcggtta tgagtacttc ccgaaagatg gcaaccatgt tttcaccatg gcgcagtggt
      661 tcccccgcct ttgcgtgtac atcgattacc agggctggca aaaccaccag ttcaccggcc
      721 gtggtgaatt tgccctcgtg tttggcaact acgacgtgga aatgaccgtt cctgccgacc
      781 acgtggttgg cggcaccggc gaatgccaga attaccagca ggtgctgagc cccgctcaat
      841 ttacccgctg gcagcaagca cagactgcca aggatgtggt agaagtagta acactggacg
      901 aagccaaaaa agcggaaccc aacaaggcca ctgctaagaa gacatggaaa tacaaagcca
      961 gcatggtgcg tgattttgcc tggaccagca gccgcaaatt catttgggat gccatgccca
     1021 cctatgtgga aggcaagaaa gtgatggcca tgagctatta ccccaaagaa gcctacaacc
     1081 tgtggcgcaa atacagcacc aaggtggtag cgcatacgct gaagtcgtac agcaagttct
     1141 cgatcccata tccctatcct gtggccatca gcgtggaagc cagcaatggc atggaatacc
     1201 ccatgatctg cttcaacaat ggccgctgtg cgaaagatgg cacctatacc gaggccacca
     1261 agtatgccat gatcggcgtg atcattcacg aagtgggcca caacttcttc cccatggtcg
     1321 tgaacagcga cgaacgccag tggagctgga tggacgaagg cctcaatacc tttttgcaat
     1381 acctggccga agagttgttt gacaataaat accccagccg ccgcggtccg gcctgggcta
     1441 ttgtggacta catgaagctc ccgaaagatc aactggagcc catcatgacc aacagcgaaa
     1501 acatcataca gtttggcccc aatgcttaca gcaaacccgc cactggcctg aacatccttc
     1561 gcgaaaccat tatgggtcgc gacctgtttg atttctcttt cagagaatat gcccgtcgct
     1621 gggccttcaa gcaccccact cctgctgatc tcttccgcac catggaagat gccagttccg
     1681 tagacctcga ctggttctgg cgtggttggt tctacagcat cgatccctgc gacatatcgc
     1741 tggatactgt gaagagttac aaggtgaatg ttgagaatcc aacggccacc atgggtcgtc
     1801 gtggtggttc tgacaccatc cgtgtagcca agccaca
//
LOCUS       DATIQF010000766         2397 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_103074,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000766 DATIQF010000000
VERSION     DATIQF010000766.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2397
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103074"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..771)
                     /locus_tag="VLL95_13115"
     CDS             complement(<1..771)
                     /locus_tag="VLL95_13115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39848.1"
                     /translation="MFRLFLLLLLVANSNMSLLAQLIEPVLQTGHKQDITLVDVAFEK
                     SVYLTGNKTELILWNSRNGWQLRKIAPGLAIIGASFTNDGNEIAVMCYEYGKISALLF
                     YDVASGAFKDSVSFEETQMWGKRYPPLDELIVSADRTTMMLRSFDKIFLVNCLSRSLT
                     GHFKIPSYDSRLAFINDSTAMVASGDNKTIVQQLRLPQGEILATKELHSSASPLAVKA
                     YTNGILVLLKNKKLLQLDEMWQPKEEIALPENTSVSSYK"
     gene            complement(826..2082)
                     /locus_tag="VLL95_13120"
     CDS             complement(826..2082)
                     /locus_tag="VLL95_13120"
                     /inference="COORDINATES: protein motif:HMM:NF037982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HSR39849.1"
                     /translation="MSRKRKTLSKKLLSKLRQFGPGLITGASDDDPSGIATYSQAGAR
                     FGPQLLWTALATYPLMVAIQEMCARIGLVTDRGLTGIIRQYYPRPLLYLILLVSFPSI
                     TMNIGADIAGMGAVANMMLPAVPAPAFSIFFTLLLMYLIVQWNYRRIATVLKWLCLSL
                     FTYLLIPFFADTNWWSALVHTILPTIQWNAGFLFALVGILGTTISPYLFFWQASMEVE
                     EENDLHLVVNNRVIKAMNTDVKGGIAFSNLVFYFIILATGTVLFNAGLHNIETVDDAA
                     KALQPLAGPMAGWLFAIGVLGTGMLAIPVLAGSLSYMMAETFGWEEGMSKKFHEAKGF
                     YITLIVSLGVGLGILFTGLSPIKALLYTAVLYGTIAPILIGIILHICNNKKIMGRYTN
                     TRWQNIAGICAMVLMTASAIALFLLY"
BASE COUNT          651 a          587 c          584 g          575 t
ORIGIN      
        1 tttgtaactg ctgacagaag tgttttccgg taaggcgatt tcttcttttg gctgccacat
       61 ctcatccaat tgcagcagct tcttgttttt cagcagcacc aaaatgccat ttgtataagc
      121 ctttacagcc aatggcgatg cagaggaatg cagctctttg gtggccaaga tttcgccttg
      181 cggcagtcgc aattgctgaa cgatggtttt gttgtcgcca ctggccacca tggcggttga
      241 atcattgatg aaggccaggc gtgaatcgta ggaagggatt ttgaaatgac cagtgagtga
      301 gcggcttagg caattcacca ggaagatttt atcgaagctg cgcaacatca tggtcgttct
      361 gtctgcactc actatcagtt catcaagcgg tgggtatcgc ttgccccaca tttgtgtttc
      421 ttcaaaactg acggaatcct tgaaggcacc actggccaca tcataaaata gcaatgcaga
      481 aatcttgccg tattcataac acatcacggc tatttcattg ccatcgttgg tgaagctggc
      541 accaatgatc gccaaacctg gtgctatttt ccggagttgc cagccgtttc gactgttcca
      601 taaaatgagt tccgttttat tgccggtgag ataaaccgat ttttcaaaag ccacatccac
      661 caatgtgatg tcctgcttat gaccggtttg cagcaccggt tctatcaatt gtgcaagtag
      721 cgacatattg ctgttggcca ccagcagcaa tagcaggaat aaacgaaaca tgctttgaaa
      781 ataagggaaa tatccttcgc cgttttccag gagggaagct gcctgctaat agagcaggaa
      841 taacgcaatg gccgatgccg tcatcaatac catggcacaa atgccggcaa tgttttgcca
      901 gcgggtgttg gtatagcggc ccattatttt tttgttgttg caaatgtgaa ggatgatgcc
      961 aatgagtatg ggggcaatgg tgccatataa caccgctgtg tacagcaatg ctttaatggg
     1021 agagaggccc gtaaacaata tgcccaaccc aacacccagc gaaacgatca gtgtgatgta
     1081 aaagcctttc gcttcgtgaa actttttact catgccttcc tcccagccaa aggtttcagc
     1141 catcatgtaa ctcagggagc cggccagcac gggaatggcc agcatgcccg tacctaaaac
     1201 acctatggca aacaaccagc ccgccatcgg accagccagc ggctgcaatg ctttggctgc
     1261 atcatctacg gtttcaatat tgtgaaggcc ggcattgaac aaaacagtgc cggtggccag
     1321 aatgatgaaa tagaaaacaa ggttgctgaa agcgatacca cctttcacat ctgtattcat
     1381 cgctttgatg acgcgattgt ttaccacgag gtgcaagtcg ttttcttctt ccacttccat
     1441 gctggcctgc cagaaaaaga ggtagggtga aatggtggtt cccaaaatac ccaccaatgc
     1501 aaaaagaaaa ccggcattcc attgaatggt gggaaggatg gtatgcacca gtgcactcca
     1561 ccagttggtg tcagcaaaaa agggaatgag caggtaggtg aacaaactga ggcaaagcca
     1621 tttcaacacc gtggcgatgc gccggtaatt ccactgcaca atgaggtaca tcagcagcag
     1681 ggtgaagaaa atggaaaaag cgggagccgg cacagcaggc agcatcatat tggccacggc
     1741 gcccataccg gctatgtcag cgccaatgtt catggtgatg gaaggaaaac tcaccagcaa
     1801 tatcaggtac aacaagggcc tgggataata ctgcctgatg atgccggtaa gtccacgatc
     1861 ggttaccaac ccaatgcggg cacacatttc ctggatggcc accatcagcg ggtaagtggc
     1921 cagggccgtc cacaacaact gcgggccaaa ccgggcgcct gcctgcgagt acgttgcaat
     1981 gcccgatggg tcatcatcgc tggcgccggt gatcaggccg ggaccaaatt gtcgcagctt
     2041 gctcaacagc ttctttgaca gtgttttacg cttgcggctc atggaagctc ctttccttat
     2101 gaaagataag cgcaaccggt gcattcaaac atgaccgcgg gcatgctaca tagtttatgc
     2161 tatcacagca ttgatattga tcatatttca cccaatatgg ctggcatagt tttgagccat
     2221 ctcactgaaa tcagaagccg attgtagggg tgcggaaacc atgccactac aacggcttcc
     2281 gttattctga tacttatctt atatggctac cattaccgct gttgcgggtg ccgaaaaacc
     2341 caaaacagat ccccgcctca agctcattgc agcaaaaatc aaaaaggaaa attacaa
//
LOCUS       DATIQF010000767         1570 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_285595,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000767 DATIQF010000000
VERSION     DATIQF010000767.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285595"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..322)
                     /locus_tag="VLL95_13125"
     CDS             complement(<1..322)
                     /locus_tag="VLL95_13125"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSR39850.1"
                     /translation="MQERSNIQQILKETFGYDSFRPGQEAIIQSVLEGNDTLALLPTG
                     GGKSVCYQVPALAMEGICLVITPLIALMKDQVRQLRKRNVAAMALHSGMNFFEVKKVL
                     EIACE"
     gene            complement(365..>1570)
                     /locus_tag="VLL95_13130"
     CDS             complement(365..>1570)
                     /locus_tag="VLL95_13130"
                     /inference="COORDINATES: protein motif:HMM:TIGR01525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HSR39851.1"
                     /translation="DTVMSGIQEMMKKAQTEKPPVQQLADRISAWFIPAVLAVAAITL
                     LGNLFIGGHNFTESLMRSVAVLVIACPCAMGLATPAAIAVGLGRAAKHGILYTDVKRM
                     ELFRNIRQMVFDKTGTLTTGKFSIAAFEAVEGDEEDFKKLVFSLEKYSNHPIAKSITE
                     AWRSKDALRLQKVEEIKGEGMKAEDKDGNVYRLGSKKILTQEPQVLHSLYVTKNNEVI
                     GWIDIADEIRQEAAAVIDYCKSQGIKTILLSGDSEEKCAIVANQLGIDVVYAAKSPSE
                     KLQIIDDLAAEQPTVMVGDGINDAPALAKATISVSLSEASQLAIQSASVVLTNNGLKN
                     LPKAMQLGKLTYGTVKSNLFWAFFYNVIAIPVAALGFLHPTIGALIMGGSDVVLALNS
                     LYLGVRKLK"
BASE COUNT          368 a          426 c          357 g          419 t
ORIGIN      
        1 cttcgcaggc aatctccagc acttttttta cctcgaaaaa attcatgccg ctgtgcaacg
       61 ccatggccgc cacattgcgc ttgcgcaact gtcgtacctg gtctttcatc aaagcaatga
      121 gcggcgtgat cacgaggcaa attccttcca tggccagtgc aggcacctgg tagcaaaccg
      181 acttgccccc accggtagga agcagggcca gggtatcatt gccttcgagc acggactgaa
      241 taatcgcttc ctgcccgggc cgaaaggaat cgtaaccgaa ggtttctttg agtatttgct
      301 gaatattgct gcgctcctgc actgcaagat gtggttaatg ctgaataaat gttgcaggtg
      361 aaaactactt caactttcgc acaccgaggt acaaactatt cagtgccagc accacatcac
      421 tgccgcccat gatcaatgct ccaatggtag gatgcaaaaa accaagagca gccaccggaa
      481 tggcaattac attgtaaaaa aatgcccaga acaaattgct ctttaccgtg ccgtaggtga
      541 gtttgcccag ttgcatggct ttgggcagat ttttcaagcc attattagta agcaccacac
      601 tggcactctg aatggccagc tgtgaagctt cggacaagga aacactaatg gtagccttgg
      661 ccagtgccgg tgcatcgttg atgccatctc ccaccatcac tgttggttgt tcggccgcca
      721 ggtcgtcaat gatctgcaat ttttcggaag gacttttggc agcgtatacc acatcaatcc
      781 ccagctggtt ggctactatg gcgcatttct cttcgctgtc gccgctaagc aaaatggttt
      841 tgataccctg cgatttgcag tagtcaatca ccgcagccgc ctcttgtctt atttcatccg
      901 caatatcaat ccagccaatg acctcgttgt ttttggtaac gtagagacta tgcagcacct
      961 ggggttcctg cgtcaatatt ttctttgaac cgaggcgata cacattgcca tccttgtctt
     1021 cggctttcat gccttcccct tttatctctt ccaccttttg caggcgcaag gcatctttgc
     1081 tgcgccacgc ttcggtaatg cttttagcaa tcgggtggtt tgaatacttt tccagggaga
     1141 ataccagctt cttaaaatct tcttcatcac cttccactgc ttcaaaggcc gcgatggaga
     1201 attttccggt agtgagggta cctgttttat cgaacaccat ttgcctgatg ttgcgaaaca
     1261 attccatgcg ttttacatca gtgtacaaga tgccatgttt ggctgcacga ccaagcccta
     1321 ccgcaatggc agcaggcgtt gccagcccca tggcgcatgg gcaggcaatc actaatacgg
     1381 ccacgctacg catcaggctt tctgtaaaat tgtgtccgcc gataaaaaga ttgcccaaca
     1441 gggtaatggc tgccacagcc agcactgccg gaataaacca ggcgctgatc ctgtcggcca
     1501 attgctgtac cggaggtttt tccgtctgcg cctttttcat catttcctgg atgccactca
     1561 ttacagtgtc
//
LOCUS       DATIQF010000768         1888 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_72935, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000768 DATIQF010000000
VERSION     DATIQF010000768.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72935"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..435
                     /locus_tag="VLL95_13135"
     CDS             <1..435
                     /locus_tag="VLL95_13135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39852.1"
                     /translation="NGSIWFSQAVNCEGRYAVQWHQVNAGNGKMIQTGLIKSEGSNYI
                     QTTIAVNKRNDVLIGFQQVDSTMFISPRFAYRLANDKPGTVRNIISAGEGQGATDGTS
                     WGDYSGSMVDGDNLLDLWTIQSIANEKGRGETRIVKVPLRKN"
     gene            634..1242
                     /locus_tag="VLL95_13140"
     CDS             634..1242
                     /locus_tag="VLL95_13140"
                     /inference="COORDINATES: protein motif:HMM:NF020295.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HSR39853.1"
                     /translation="MIQTGNPVISIYTEMTPNPETMKFVANKLLYPGKSIDFPDEASA
                     GPSPLAKELFTFPFIKSVFIASNFVTLTKTSDTEDWMDVIPTVKQFLKEYLENGGMVV
                     NDDEVAAAKSQKAAASNTVAADDDDVVKRIKELLENYVKPAVEMDGGAIQFKSYSEGV
                     VNLALQGSCSGCPSSMITLKAGIEGMMKRMIPEVQEVVADAE"
     gene            complement(1513..>1888)
                     /locus_tag="VLL95_13145"
     CDS             complement(1513..>1888)
                     /locus_tag="VLL95_13145"
                     /inference="COORDINATES: protein motif:HMM:NF025227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4199 domain-containing protein"
                     /protein_id="HSR39854.1"
                     /translation="QATLTNLFIIPAVVIYWLALKEKRTSLGGIISFKQAFISGLVIT
                     LVVTLFTPLQQYITQTFISPDYFKNVSAYAVETKMMTSEEAAGYFTLNNYIMQSLVFA
                     PLAGVITSLLVGWLVSRKKKTA"
BASE COUNT          504 a          440 c          498 g          446 t
ORIGIN      
        1 aatggaagca tctggttttc gcaggcagtg aattgtgaag gccgctatgc tgtgcagtgg
       61 caccaggtaa atgccggcaa tggaaagatg atacaaaccg ggctgatcaa aagtgagggg
      121 agcaactata tccaaaccac aattgctgta aacaaaagga acgatgtgct cattggcttt
      181 cagcaggtgg atagcacgat gttcatcagc ccaagattcg cctacaggct ggcaaatgac
      241 aaaccgggca ccgtccgcaa cattatttct gcaggcgaag gccagggcgc taccgatggc
      301 acttcctggg gcgattacag cggcagcatg gtagacggcg acaacctgct ggacctctgg
      361 accattcaaa gcattgccaa cgaaaaaggc cggggcgaaa cccggattgt gaaggtgccg
      421 ttgaggaaaa actaagccgc aacatccttc actggctgcg atggtccggg aattatggaa
      481 ctgtcgccgg cctctatctt tcgaataccg gaaaaatacc cccgtttccg ggagcttcac
      541 aaggcattac aaccgattgg ccccctggct tgttactttt gtggctgttt tttgtagccc
      601 gaatgggcaa atactctgaa attcgaacgc attatgatac aaacaggcaa ccccgttatc
      661 agcatttata ctgaaatgac gcccaacccg gagaccatga agtttgtggc caacaaactg
      721 ttgtaccccg gcaagagcat cgattttccc gatgaagcca gtgcaggccc ttcgccgttg
      781 gccaaggaat tgttcacttt ccccttcatc aaaagcgtgt tcatcgccag caattttgtg
      841 accctcacca agacttcgga cactgaagac tggatggacg tgatccctac cgtgaagcag
      901 tttttgaagg aataccttga aaacggcggc atggtggtaa acgatgatga agtggctgcc
      961 gccaaatcgc aaaaggcagc tgccagcaat acggtagcgg ccgacgatga tgatgtggtg
     1021 aagcgcatca aagaactgct cgaaaactat gtgaagccgg cggttgaaat ggatggcggc
     1081 gctatccagt tcaagagcta cagcgaaggc gtggtaaacc tggccctgca gggaagctgc
     1141 agcggatgcc ccagcagcat gatcacactg aaggcaggca ttgaaggcat gatgaaacgc
     1201 atgatacctg aagtgcagga agtagtggcg gatgcggagt aaaaccccat cccggtagct
     1261 atcgggaccc taaagggggc tttgagtttc gtttttgatt gtaaccgaat attgaaaaac
     1321 ctgtgaggca gaagcccaca ggttttttat tttgtgccaa tgaatgtttc tcgtttgcta
     1381 ttgcaggtag ccgataccac tagtaccagt tacaaagtag gttactacat tggttcgtgg
     1441 ctgccgtttg ggctattggt gttgctggct tttgttgtca tattcatcat cggccgaaaa
     1501 agaaaataaa tgtcaggcgg ttttcttttt tcggctcacc agccagccaa ccaaaagtga
     1561 agtgatgaca cctgccaatg gtgcaaacac caatgactgc atgatgtaat tgttcagtgt
     1621 aaaataaccg gccgcttctt cactggtcat cattttggtt tctactgcgt aagcactcac
     1681 atttttgaaa tagtcggggg aaatgaatgt ttgtgtgatg tactgctgca gcggcgtgaa
     1741 caaggtgacc accagcgtga tgaccaggcc gctgatgaat gcctgcttga aactgataat
     1801 gccacccagt gaagttcttt tttctttgag cgccagccag tagatgacca ccgccgggat
     1861 gataaacaaa ttggtaagtg ttgcctgt
//
LOCUS       DATIQF010000769         1501 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_225166,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000769 DATIQF010000000
VERSION     DATIQF010000769.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225166"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..356
                     /locus_tag="VLL95_13150"
     CDS             <1..356
                     /locus_tag="VLL95_13150"
                     /inference="COORDINATES: protein motif:HMM:NF028180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39855.1"
                     /translation="GPAGIKKVLFCSGKIYFELLEKKLADQRDDVAIVRLEQIYPLPT
                     HQLVQLNKKYNNATWFWVQEEPMNMGAAAFLKMNLQSINFGVISRKASAATATGYSKV
                     HAKEQAEIIDTAFSI"
     gene            504..>1501
                     /locus_tag="VLL95_13155"
     CDS             504..>1501
                     /locus_tag="VLL95_13155"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HSR39856.1"
                     /translation="MKKLFSSVVLLGIAFGFAIAQSNQYPYRNKSLPIEKRVADLLSR
                     MTVEEKAGQLSQLNGGAFTGPAANDPGQKVKMDLVKKGLVGSMLNVTGVEETRTIQEL
                     AVKESRLGIPVIFAYDVIHGYKTIFPIPLADACAWDPALSEQAARIAAKEASAEGLHW
                     TFAPMMDISRDPRWGRVMEGGGEDPYLGGVLSAARVKGFQGNSGNDNLMATVKHFAVY
                     GALEAGREYNHVNVDRYHLWNLYLPPYKAAVDAGAATVMNSFNVFEGVPASGNSYLVN
                     DILKKRWGFKGFLISDWNSFGEMIQHGYAKDNKDVAMKAINAGSMMDMKTLDDAVAR"
BASE COUNT          387 a          360 c          408 g          346 t
ORIGIN      
        1 cgggtccggc cggcatcaaa aaagtgttgt tctgcagcgg caagatctac ttcgaactgc
       61 tcgagaaaaa actggctgac cagcgtgatg atgtagccat tgtgcggctg gagcagatct
      121 atccgctgcc cacccatcaa ctggtgcagt tgaacaagaa atacaacaat gccacttggt
      181 tctgggtgca ggaagagcca atgaacatgg gtgctgcggc cttcctgaaa atgaacctgc
      241 aaagcatcaa ttttggcgtg atcagccgca aggccagcgc cgccacagcc accggctaca
      301 gcaaggtgca tgccaaagag caggcagaga tcattgatac cgcattcagc atttgagcgg
      361 atgaatcggt aagggtaaga tttgcgatac atgaaatggc cgggaactaa ccggccattt
      421 tttattgccc tttatcaggg gtctaatgat tcgttatgaa tatctttcat ccttcattct
      481 cattgatcaa cccgtttatc cgtatgaaaa agctgttttc ttctgttgtg ttattgggca
      541 tagcatttgg ttttgctatc gcacaaagca accagtatcc gtatcgcaat aaatcacttc
      601 ccattgagaa aagggtagcc gacctgctct caagaatgac agtggaagag aaggccggcc
      661 agctcagtca actgaatggc ggtgccttca ccgggccggc agccaatgac ccgggacaaa
      721 aagtgaagat ggatttggtg aagaaaggat tggtgggttc aatgcttaat gtgaccggtg
      781 tggaagaaac ccgcaccatc caggaactgg ccgtgaaaga aagccgcctg ggcatccccg
      841 tcatttttgc ctacgatgtt attcatgggt ataaaaccat ctttcccatt ccgctggccg
      901 atgcctgtgc ctgggatcct gccctgagtg agcaggcagc tcgcatagct gccaaggaag
      961 ccagcgctga agggttgcac tggacttttg cccccatgat ggacatcagc cgcgaccccc
     1021 gctggggccg tgtaatggaa ggcggcggtg aagatcctta tctcggtggt gtgctttcag
     1081 ccgccagggt aaaagggttc cagggcaact cgggtaatga caacctaatg gctaccgtaa
     1141 aacactttgc ggtatacgga gccctggaag ccgggcgtga gtacaatcac gtaaatgtgg
     1201 atcgttacca cctgtggaac ctgtacctgc cgccttacaa agctgctgtt gatgccggtg
     1261 ccgcaacggt catgaacagc ttcaatgtgt ttgaaggtgt gcctgccagt ggcaacagct
     1321 atttggtaaa tgacatcctg aaaaagcgct ggggcttcaa aggatttttg atcagcgact
     1381 ggaactcgtt tggcgaaatg atacagcatg gctatgccaa agacaataag gatgtggcca
     1441 tgaaagccat caatgctggc agtatgatgg atatgaaaac cctcgatgat gcggtagccc
     1501 g
//
LOCUS       DATIQF010000770         9990 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_134028,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000770 DATIQF010000000
VERSION     DATIQF010000770.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 9990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9990
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134028"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..313)
                     /locus_tag="VLL95_13160"
     CDS             complement(<1..313)
                     /locus_tag="VLL95_13160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39857.1"
                     /translation="MKRIAIIASSLALFAVACTDVKRKPGSIYVPDMAYSRAYETYAD
                     HSNLKEKGINYNNMPVAGTVGRAEDYVYHLAKDKDDDTTNYFASRLTPNPVTSLGKAE
                     MD"
     gene            complement(349..942)
                     /locus_tag="VLL95_13165"
     CDS             complement(349..942)
                     /locus_tag="VLL95_13165"
                     /inference="COORDINATES: protein motif:HMM:NF023249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3341 domain-containing protein"
                     /protein_id="HSR39858.1"
                     /translation="MDVRKFVVGCFDDEKVLFPAVKQVRKAGFRIHDVYTPFPIHGLD
                     KAMGLRETSLHTAGFIYGITGTTIALSFMSWVFTSNWPLNIGGKPHLPLPAFIPVTFE
                     FTVLCAAVGMVLTFCYLCQLAPGVKKHHFHARATDDKMVMVIECTGPTTEADATALLN
                     AAGAHEVHTQIAETGWWLGTYDKEQKLYDESYVKVPH"
     gene            complement(1034..2479)
                     /gene="nrfD"
                     /locus_tag="VLL95_13170"
     CDS             complement(1034..2479)
                     /gene="nrfD"
                     /locus_tag="VLL95_13170"
                     /inference="COORDINATES: protein motif:HMM:NF015851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NrfD/PsrC family molybdoenzyme membrane anchor
                     subunit"
                     /protein_id="HSR39859.1"
                     /translation="MSVLKYESAVRPPLVDGHKTYHQVTEDIIKPIEVAPSRLWKIGF
                     SISVALLLFGVYSVYREVTYGIGQWNLNKTIGWGWDITNFVWWVGIGHAGTLISAILL
                     LFRQGWRTGVNRAAEAMTIFAVMCAGQFPIFHMGRVWMAFFVLPYPNSRGPLWVNFTS
                     PLLWDVFAISTYFTVSLLFWYTGLLPDLATVRDRAKIKWRKRLYGLLSFGWTGSTKHW
                     QRHESLSLVLAGLSTPLVLSVHTIVSFDFATSVIPGWHTTIFPPYFVAGAIFSGFAMV
                     QTLMLVTRKVLNLQDYITLEHIEVMNKVIVLTGSIVGVAYLTELFMAWYSQNPYEGYT
                     FWYSRANLFSPYGWSYWGMMACNVLSPQIFWFKKLRRNITVTFFMSVIVNIGMWFERF
                     VIIVTSLYRDYVPSSWSYYYSPTIWEIGFYLGTFGLFFTCYFLFAKWFPVIAVAEIKH
                     ILKRSGESYKAEEQKVLEDKNLQEFEHVMAH"
     gene            complement(2631..5837)
                     /locus_tag="VLL95_13175"
     CDS             complement(2631..5837)
                     /locus_tag="VLL95_13175"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAT-variant-translocated molybdopterin
                     oxidoreductase"
                     /protein_id="HSR39860.1"
                     /translation="MSNKIWQNFGALNKTESHQAKVEDEFNEDLPIEADDKGLLNAKA
                     PRRDFLKYLGFSTAAATVAASCEMPVKKAIPFVNKPDNIVPGVANYYATTYVQDGDVQ
                     SVVAKVRDGRPIKIEGNELCPITQGGSSARAQASVLDLYDTSRLRFPAQIKEGKLVEV
                     STFEAFDKMIAEGLAGLNGAPVVILTSTITSPSSKQLVGEFLAKYPGSRHVTYDAVSY
                     SGMLLANEATYGKRAIPSYHFDNAKVIVSLGADFLGTWLSPVEFAKQYSKGRKIDEKN
                     IELSKHYHFESILSMTGANADERFTHKPSEAGVVAAALYAAVTGGSVSVADAKLKAGI
                     EKAAKDLKAAGGAALVVSGSNDANVQVVVNAINEAIGAAGKTINWAVTSNYRQGVDSE
                     FETLVADMNAGKVGALFVVGANPAYSYAKADQFKAGLAKVKLSVSFNAKFDETTELCK
                     YVIPDSHFLESWGDAEPKSGYVSFIQPTIAPLFKTRQWQDSLLTWMGGTKEATTSAAG
                     DTAKAAAPVMAAGTNWVNYLKNFWAGKLGGQEAWDKALRDGVVCPAEMPLGTSAFNAA
                     AVAGAVSAVSTAAKGGAWEVVLYEKTTIGSGAQASNPWLQEAPDPVTKATWDNYAMIS
                     AAAAKELLDIDLTDNGDTDSYEVNPKKPVLKIKANGKEIDLPVIIVPGTQKNTIGIAL
                     GYGRSEKVGVAVRGAGKNAYPMTAVVNGAISYAAYDATVTATGELYEVAQNQTHNSYE
                     GRMEVVKETSLATFKKNPEMFKAQRDALVKDYASKTGDYRNEGSLYDPRLNDRPGVHW
                     GMSIDLNTCTGCAACVVACNAENNIPVVGKTEVLRGHDMHWMRIDRYYVTDEKNPDEL
                     KDVVFMPMMCQHCDNAPCENVCPVAATNHSSEGLNQMTYNRCIGTRYCANNCPYKVRR
                     FNWADYTGADSFPDNQVGHVSDVTLEMNDDLYRMVLNPDVTVRSRGVIEKCSFCVQRL
                     QAGKLEAKKQGRPLKDGEVKTACQQACPTNAISFGDSNDKSSLVRTQRDHSPLRMYYA
                     LEQIHVLPNVNYMAKIRNTDEMLEVDAAHTPADKEHHG"
     gene            complement(5947..7182)
                     /locus_tag="VLL95_13180"
     CDS             complement(5947..7182)
                     /locus_tag="VLL95_13180"
                     /inference="COORDINATES: protein motif:HMM:NF014176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HSR39861.1"
                     /translation="MMNTSKASKLLFFGLTLAALVGFSNLNAQDGKALFNANCASCHK
                     IDKYLTGPALQGVEDRWPSKDLLKVWIKNWSAAVATGDGYAAKMKDWSPAAMNQFPNL
                     SDADVDAILTYIKDWKPATPAPAAGAVAAPAEEGDNSLLFGVITLVLALLALILLQVN
                     SNLRKLADEKDGIHSPEPVAFWKNKTYLAFATVFLFVLAGVYISKGAVNLGRSKDYQP
                     ERPIYYSHKVHAGVNQINCLYCHGGAQEGKHANIPSINVCMNCHMAINEYKGEPLYAE
                     DGTEINGTNEIKKLYEYAGFTPGQAWDPSKAKPIEWIKIHNLPDHVYFNHSQHVVAGK
                     VACQTCHGEIQKMGEVKQFADLSMGWCINCHRQTKVQFTENGFYSIYEKFHEDMKNGK
                     LDSVTVEKIGGTECQKCHY"
     gene            7504..8280
                     /locus_tag="VLL95_13185"
     CDS             7504..8280
                     /locus_tag="VLL95_13185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39862.1"
                     /translation="MDTWLNQQPLVTIGLYLVTGMVLALLLGRRLEVWFVKRFGDLPE
                     GTTTLISAIFALTAFLLGFAFNMSNNRYEQRRQSIVEEANAIGTAMLRIDLYPDSLRP
                     VFKGHFDDYLAKRIAFFKAGPQYDSAMYWEAEAGKSGDQLWQMATRYGRDTKDIIATS
                     QMIPALNAMFDAATTRRFGIIAKVPEPILYLLFLLAFTSAFLAGFNSPKEKVNYFVST
                     IFCLMTVLVILLVFDLDRPRRGLVRFDDTHKAIESLQTTK"
     gene            8342..9220
                     /locus_tag="VLL95_13190"
     CDS             8342..9220
                     /locus_tag="VLL95_13190"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HSR39863.1"
                     /translation="MFNRLQQKWKVSGWQLFLILSTFALGGSLCGFFTREIITPLAIE
                     NDFIYGTLYFVFLTLLWPLCVIIISIPLGQFRFFSNYLRKMGSRLGIGKGPKPDHTPH
                     ARTRLAIFASGSGSNARKMMERFSKHPRIEVALLVSNKPGIGALHHAADFGISTLVIE
                     KEQFFRGDAYVNELRSHGIDFIILAGFLWKVPSPLIAAFQGKILNIHPALLPKFGGKG
                     MYGKFVHEAVLAAHETESGITIHLVDEQYDHGATVFQASCPVLADDTPDTLAARIHAL
                     EHQHYPEVVEQFVTSH"
     gene            9286..>9990
                     /locus_tag="VLL95_13195"
     CDS             9286..>9990
                     /locus_tag="VLL95_13195"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HSR39864.1"
                     /translation="MKQRLLIALSLLLLLNTSFSQNTLVEAPANEAGMNAARLNLIDD
                     LVKQYTDSQWVAGGTCIVARNGKIVYYKAFGVSNWDTKKPSQKDDIFRIASQTKAITS
                     TAIMLLFEEGKLLLDDPVSKYIPAFAGQQVIDKFNEADTTFTTVKAKRGITIRDLLTH
                     TSGLGYAQIGSPQANAMYAKAGVTGQIGSPNASLKEQVMKIASLPLQHQTGERWTYGL
                     NTDVLGYLVEVLSGKSL"
BASE COUNT         2396 a         2617 c         2549 g         2428 t
ORIGIN      
        1 catccatctc cgcctttccc aaagaggtaa cagggttggg ggttaaccgg ctggcaaaat
       61 agttggtggt atcgtcatct ttgtccttag ccaggtggta cacataatct tcagcacgac
      121 ccaccgttcc ggcaacaggc atgttgttgt agttaatgcc cttttctttc aggttgctgt
      181 ggtcggcata tgtttcatag gcgcggctgt aggccatgtc tggaacataa atgctgccgg
      241 gtttacgctt tacatcagtg catgcaacgg caaacaatgc caatgacgat gctatgattg
      301 ctattctttt catttcaaaa aattcggttc gtttcgttgc gtagaaaatt aatggggcac
      361 tttcacgtat gattcgtcgt acagcttctg ctctttgtca taagtaccca gccaccagcc
      421 ggtttcggct atttgggtat gtacttcatg agcacctgct gcattcagca aagcggtagc
      481 atcggcttca gtggtaggac cagtgcactc aatgaccatc accattttgt cgtcggtagc
      541 acgagcatgg aaatgatgct tttttacacc cggagccagc tggcacaggt agcaaaaagt
      601 aagcaccatg cctaccgccg cacacaatac ggtaaactcg aaagtaaccg ggatgaaagc
      661 aggcaaaggc aagtggggct taccaccaat gttcaggggc cagttggaag tgaacaccca
      721 gctcatgaag ctcaatgcga tggttgtacc ggtaatgcca taaatgaaac ccgcggtgtg
      781 caaactggtc tcacgcaaac ccatggcctt gtcaagaccg tgaatgggaa acggcgtata
      841 cacatcatgg atgcggaaac cggctttgcg cacctgcttc acggcaggga acaatacctt
      901 ttcgtcatcg aaacagccaa caacaaattt tctaacgtcc atattttcaa ttttgactac
      961 cgcttccagg ctcgctttct tcggtagctt tttgcattat tattttttgc accaagcagg
     1021 agttcatcgc tgcttagtgt gccattacat gctcaaattc ctggaggttc ttgtcttcca
     1081 acaccttctg ctcttcagcc ttgtagcttt cgccactgcg cttcaggatg tgcttgattt
     1141 cagccacagc aattaccggg aaccacttgg cgaaaaggaa atagcaggtg aagaacaatc
     1201 cgaacgtacc aaggtagaaa ccgatttccc agatggtggg gctgtagtag tagctccagc
     1261 tggatggaac atagtcgcgg tacaaagagg tcacgatgat cacgaaacgc tcgaaccaca
     1321 taccaatgtt cacgatcaca ctcatgaaga aggttacggt gatgttgcgg cgcagcttct
     1381 tgaaccagaa gatctgcggg ctcagcacgt tacaggccat catgccccag tagctccagc
     1441 cataggggct gaacaggttg gcacggctgt accagaaagt atacccttca tatgggttct
     1501 ggctgtacca ggccatgaag agctcggtca ggtaggccac ccctactatt gaaccagtca
     1561 acacgatcac tttgttcatc acttcgatgt gctccagcgt gatgtagtcc tgcaggttca
     1621 gcactttacg ggttaccagc atcagggttt gcaccatggc aaaaccggag aagatggcac
     1681 cagccacgaa gtaaggcggg aagatggtgg tatgccagcc ggggataaca gaagtagcga
     1741 agtcgaacga tacgatggtg tgtaccgaaa gtaccagggg agttgacaaa cctgccagta
     1801 caaggctcag gctttcatga cgctgccagt gcttggtgct gcctgtccag ccaaaagaaa
     1861 gcaggccata caaacgcttg cgccacttga tcttggcacg gtcacgaacg gtagccagat
     1921 cgggcaacaa gccggtgtac cagaacaaca acgataccgt aaagtaggta gagatcgcaa
     1981 acacgtccca caacagtggt gaggtaaagt ttacccacaa aggaccacgg ctgttggggt
     2041 aaggcagtac gaagaaggcc atccatacac gacccatgtg gaagatgggg aactggcccg
     2101 cacacattac cgcaaagatc gtcatggctt cagcggcgcg gtttacaccg gtgcgccagc
     2161 cctggcggaa aagcaacaag atggcagaga tcagcgtacc ggcgtgaccg atacctaccc
     2221 accacacgaa gttggtgatg tcccaacccc agccgatggt cttgttcagg ttccactgac
     2281 cgataccata ggttacttcg cggtatacac tgtacacacc aaacagcagc aacgccactg
     2341 aaatgctgaa gccgatcttc cacaaacggg aaggagccac ttcaatgggc ttaatgatgt
     2401 cttcagttac ctggtggtag gttttgtgtc catctaccag cgggggcctt acggcacttt
     2461 cgtactttaa tacagacata tgtgcttcgc ttttcgcttt cggccaatgg cctcagctat
     2521 tgtttctttt atcttttttc tggtcaacca acaacgccgc ttgttccggc ctcgtggtgt
     2581 ctcccgataa ctatcgggac acttcaactt tctgattcgc tattcagcta ttatccgtga
     2641 tgctctttgt cggcaggtgt atgggctgcg tctacttcca gcatctcgtc ggtgttcctg
     2701 atcttggcca tgtagttcac attgggcagt acgtggatct gctccagtgc atagtacatg
     2761 cgcagcgggc tgtggtcacg ctgggtgcgt accaggctgc tcttgtcgtt gctgtcacca
     2821 aagctgatgg cgttggtagg acaagcctgc tgacaagcag tcttcacttc accatctttc
     2881 agggggcggc cctgcttctt ggcttccagc ttaccagcct gcaaacgctg cacacagaaa
     2941 gaacacttct cgatcacacc gcggctgcga acagtcacgt cagggttcag caccatgcga
     3001 tacaggtcat cgttcatttc caaagtcaca tcgcttacat ggcccacctg gttgtcaggg
     3061 aagctgtcag cgccagtgta gtcggcccag ttaaagcgac gtactttata aggacagttg
     3121 ttggcgcaat aacgggtacc aatacaacgg ttgtaggtca tttggttcag gccttcgctg
     3181 ctgtggttgg tagcagccac cgggcatacg ttttcgcaag gagcgttgtc gcagtgctgg
     3241 cacatcatcg gcatgaacac gacatccttc agttcatcag gattcttttc gtcggtcaca
     3301 tagtagcggt cgatgcgcat ccagtgcata tcgtggccac gcagtacctc ggtcttaccc
     3361 actacaggaa tattgttctc ggcattacaa gccaccacgc aggcagcaca gccggtgcag
     3421 gtattcaggt cgatgctcat gccccagtgt acaccaggac gatcgttcag gcgtggatca
     3481 tacagcgaac cttcgttgcg gtagtcgccg gtcttgctgg cgtaatcttt caccaaagcg
     3541 tcgcgctgcg ccttgaacat ttcaggattc ttcttgaaag tagccagtga ggtttctttc
     3601 accacttcca tacgaccttc ataggagttg tgcgtttggt tctgggccac ttcatacaac
     3661 tcgccggtgg cagtaacggt ggcatcataa gcagcatagc ttatggcacc atttaccact
     3721 gcggtcattg ggtaagcatt cttaccagcg ccacgcacag ctactcccac tttttcgctg
     3781 cggccataac caagtgcaat accgatggta tttttctggg tgcccggaac gatgatcaca
     3841 gggagatcaa tttccttgcc gttggccttg atcttgagaa ccggcttctt cggatttact
     3901 tcgtagctgt cggtatcacc attgtcagta aggtcaatat ccagcaactc tttggcagcc
     3961 gccgcagaga tcatggcgta gttgtcccag gtagctttgg tcacggggtc tggtgcttcc
     4021 tgcaaccagg ggttgctggc ctgtgcgcct gaaccgatcg tggttttttc gtacagtacc
     4081 acttcccacg caccgccttt ggcagcagta gaaacggcgc ttacggcacc tgccactgcg
     4141 gcagcattga aggcagaagt acccaagggc atttctgccg ggcaaaccac gccatcacgg
     4201 agggctttgt cccaggcttc ctggccgccc agtttgccgg cccagaaatt cttcaggtag
     4261 ttcacccagt tggtaccggc tgccatcaca ggagctgctg ccttcgcagt atcacctgca
     4321 gctgaagtag ttgcttcttt ggtgccaccc atccaggtca acaggctgtc ctgccactgg
     4381 cgggttttga acaagggagc aatggtgggc tgaatgaacg atacataacc gctcttgggc
     4441 tcggcatctc cccagctttc gaggaaatgg ctatcaggaa ttacgtattt gcagagctca
     4501 gtggtttcgt caaacttggc attgaacgaa acagagagtt tcactttggc caaaccagcc
     4561 ttgaactggt cagccttggc gtagctataa gcaggattag cgccaacaac gaacagggca
     4621 cccactttgc cggcattcat gtcggctacg agtgtttcaa attcgctgtc aacaccctgg
     4681 cgatagttgc tggtcacagc ccagttaatg gttttgccgg cagcaccaat ggcttcattg
     4741 atggcgttta ccaccacctg cacgttggcg tcattgctgc cgctcactac cagggctgca
     4801 ccaccagcgg ctttcaggtc tttggccgct ttttcgatac cagctttcag cttggcatcg
     4861 gccacgctta cggaaccacc ggttacagca gcatacaaag cagcggctac cacacctgct
     4921 tcagaaggct tgtgcgtaaa gcgttcgtcg gcgttggcac ctgtcatgct caggatgctt
     4981 tcgaaatgat agtgcttgct gagttcaata tttttctcgt cgatcttgcg gcctttggag
     5041 tattgcttgg caaactccac agggctcagc caggtaccga ggaaatcggc gccgaggctt
     5101 acgatcactt tggcattatc gaaatgatac gaaggaatgg cacgcttgcc ataggtggct
     5161 tcgttggcca gcagcatgcc gctgtagcta accgcatcgt aggttacatg acggctgccg
     5221 ggatatttgg ccaggaattc tcccaccagt tgcttagatg aaggagaagt gatggtagaa
     5281 gtcaggatca caacaggagc gccgttcaaa ccagccagac cttcagcaat cattttgtcg
     5341 aaggcctcga aggtggatac ttccaccagt ttgccttctt tgatctgggc ggggaaacgc
     5401 aaacggctgg tgtcgtaaag atccagtacg gaagcctggg cacgggcact ggaaccgcct
     5461 tgggtaatgg ggcacagttc gttgccttca atcttgatgg gacgaccgtc acgaaccttg
     5521 gccaccacgc tttgtacatc gccatcctga acataggtag tggcgtaata attggccaca
     5581 cccggaacaa tgttgtcagg cttgtttaca aaggggattg ccttttttac aggcatttcg
     5641 cagctggctg caacggtagc ggcagcagtg ctgaagccga ggtacttcaa aaagtcgcgg
     5701 cggggagctt tggcattcag cagccctttg tcgtcggctt caataggaag gtcttcattg
     5761 aattcatctt ccacctttgc ctggtgactt tcagtcttgt tgagggctcc gaaattttgc
     5821 cagattttat tgctcatact atactaaatg tgagaatttg aaattttatg tgccaattcg
     5881 ctaaagggca ggtccaggcg ggattttgat tcatggggct tcccccctcc cgcacaaccg
     5941 gtcaaattag taatggcatt tctgacattc tgttccaccg atcttttcaa cggtcacgct
     6001 gtcaagcttg ccgttcttca tgtcttcgtg gaacttctcg taaatgctgt agaaaccatt
     6061 ttcagtaaac tgcaccttgg tttggcggtg acagttgata caccaaccca tgctcaggtc
     6121 ggcaaactgc ttcacttcac ccatcttctg gatttcacca tggcaggttt ggcaggctac
     6181 cttacccgct accacgtgct gggagtggtt gaaataaaca tggtcaggca ggttgtggat
     6241 cttgatccac tcaatgggct tggcctttga aggatcccat gcctggccgg gcgtaaatcc
     6301 tgcgtattcg taaagtttct tgatctcgtt ggtgccattg atctctgtac cgtcttctgc
     6361 atacaggggc tcacccttgt actcattaat ggccatgtgg cagttcatac acacattgat
     6421 agaagggata ttggcgtgct tgccttcctg ggcgccgcca tggcagtaca aacagttgat
     6481 ctggttgaca ccagcgtgca ccttgtggct gtaataaata ggccgctcgg gctggtaatc
     6541 tttgctccgg ccgagattta cagcaccctt agaaatataa acacccgcca gtacaaacag
     6601 gaatacagta gcaaaagcga ggtaagtttt gtttttccag aaagcaaccg gctcaggaga
     6661 gtggatgcca tctttttcat cggccagttt gcgcaggttg ctgttcacct gcaacaggat
     6721 cagggccagc agtgccagca ccagggtaat tacaccaaaa agcaacgaat tgtcgccttc
     6781 ctcggcaggg gcagccaccg caccggcagc cggggcaggg gtagctggtt tccagtcttt
     6841 gatataagta agaatggcgt caacatccgc atcgctgagg ttggggaatt ggttcatggc
     6901 tgcaggactc cagtccttca ttttggcagc gtatccgtcg ccggtagcca cggctgcaga
     6961 ccagtttttg atccaaacct tcagcaggtc tttgcttggc cagcgatcct caacgccttg
     7021 caaagcagga ccagtaagat acttgtcgat tttgtggcag gaagcacaat tggcattaaa
     7081 aagcgccttg ccgtcctggg cattaaggtt ggaaaaccca accaaggcag caagcgttaa
     7141 tccaaaaaaa agcagtttgc tggctttgct agtattcatc ataactcact gaaattgaac
     7201 agcaggtgga aagatatccg ctatttggcg ggcaaaaata tgacgtcagc gtgacaatta
     7261 ccgggaaacg aaaaaaaaaa tttcccctac tgccacaagg gtttcagcga attgtgggca
     7321 agtcgcggag cggttggtgc aggaaaccgc aggcctgtgg gaggagctgt tcgcctccgc
     7381 cattcagtgg ttttttcgaa gcgtgcaccg aatggggagg tgccaaattt gtgtggcagc
     7441 aagccggtca actgaaactt cgagtcaata atgcagtaaa ttcatgaaaa ggattaacag
     7501 catatggata cctggctcaa tcaacaacca ctggttacaa tcggcctgta tttggtgacc
     7561 ggcatggtgc tggcattatt gcttggcagg cgccttgagg tatggttcgt aaaaaggttc
     7621 ggcgaccttc ccgaaggaac caccaccctc atctctgcca tatttgccct cactgccttt
     7681 ttgctgggct tcgctttcaa tatgagcaat aaccgatacg aacagcggcg gcaaagcata
     7741 gtggaagaag ccaacgctat cggaacagcc atgttgagga ttgatttgta ccccgattcc
     7801 ctgcggccgg tcttcaaggg ccatttcgac gattacctgg caaagcgcat cgcttttttc
     7861 aaggcagggc cccaatacga ttctgccatg tattgggagg ctgaggctgg caaatccggg
     7921 gaccagctgt ggcaaatggc cacccgctac ggccgcgaca ccaaagacat catcgccaca
     7981 agccaaatga tacctgcact caatgccatg ttcgatgcag ccaccacacg gcggtttggc
     8041 atcatagcga aagtgccgga gccaatattg tatttactct tcctgctggc attcaccagt
     8101 gccttcctgg caggcttcaa cagcccaaag gaaaaagtga actactttgt gtccaccatc
     8161 ttctgcctga tgacggtact ggtaatattg ctggtattcg atttggacag gccgcggcgc
     8221 ggtttggtcc gtttcgatga cacgcacaag gccattgagt cgcttcaaac cacaaagtag
     8281 ccagggaaag taggaggctg ctgcgcagca gccctttcgc aattttgccc atcttcgcag
     8341 catgttcaac aggcttcagc aaaaatggaa agtatccggg tggcaactgt tcctgatcct
     8401 gagcactttt gccctgggcg gcagtttgtg cggatttttt acccgggaga tcatcacccc
     8461 ccttgccatt gagaatgatt tcatttacgg caccctctat tttgtattcc ttaccctgct
     8521 gtggccgctg tgtgtcatta ttattagtat accattgggc caattccggt ttttcagcaa
     8581 ttacctccgc aaaatgggca gccggctggg aattggcaaa ggcccgaaac ccgaccatac
     8641 cccgcatgcc cggaccaggc tggccatatt tgccagcggc agtggcagca atgcccgcaa
     8701 aatgatggag cgcttcagca agcacccccg gatagaagtg gcattgctgg taagcaacaa
     8761 accgggaata ggcgccttgc accacgccgc cgactttggc atttcaaccc ttgtcatcga
     8821 aaaggaacaa ttcttccgtg gcgatgccta tgtgaacgaa ttacgcagcc acggcattga
     8881 tttcatcatc ctggcaggtt ttctctggaa ggtcccctct ccgcttattg cggccttcca
     8941 gggcaagatc ctgaacattc acccggcatt gctgcccaag tttggcggca agggcatgta
     9001 tgggaaattt gtgcatgaag ccgtgttggc cgctcatgaa actgaaagcg gcataaccat
     9061 ccacctggtg gacgaacaat acgaccacgg cgccactgtc ttccaggcca gctgcccggt
     9121 attggctgat gacaccccgg atacactggc agcccgcatt catgcgctgg aacaccagca
     9181 ttatcccgaa gtggtggagc aatttgtaac ctcccactag tctttgccag gttgattggc
     9241 aggcataggt caaattgaat tagattgaac cctaaaaaaa tgccgatgaa gcaaagacta
     9301 ttgattgcct tatccctact tctgctgctg aatacatcct tcagccaaaa cactttggtg
     9361 gaagcgcctg ctaatgaagc aggcatgaac gcagcccggc tgaacctgat tgatgatttg
     9421 gtaaagcaat ataccgacag ccaatgggtg gcaggtggca cctgcattgt agcccgcaat
     9481 ggcaagatcg tttactacaa agcgtttggt gtcagcaatt gggacactaa aaagccttcg
     9541 caaaaggatg acatattccg gatcgcctcg caaaccaaag ccatcaccag taccgccatc
     9601 atgctgttgt ttgaagaagg caaactattg ctcgatgacc cggtttccaa atacatccct
     9661 gcatttgccg gtcagcaggt gatcgacaaa ttcaacgaag ccgataccac ttttaccaca
     9721 gtgaaagcaa aacgcggcat caccattcgc gacctgctca cccacacatc ggggttgggt
     9781 tatgcgcaaa taggcagccc gcaggccaat gccatgtatg ccaaagcagg agtaaccgga
     9841 caaataggga gccccaacgc cagcctgaaa gagcaagtga tgaaaatagc gagcctgcca
     9901 ttgcagcacc agaccggcga aagatggacc tatggcctga acactgatgt actgggatac
     9961 ctggtggaag tgctgagtgg caaaagcctg
//
LOCUS       DATIQF010000771         1681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_73018, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000771 DATIQF010000000
VERSION     DATIQF010000771.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1681
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73018"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..1204)
                     /locus_tag="VLL95_13200"
     CDS             complement(83..1204)
                     /locus_tag="VLL95_13200"
                     /inference="COORDINATES: protein motif:HMM:NF023828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3667 domain-containing protein"
                     /protein_id="HSR39865.1"
                     /translation="MSHAKERKEKNCLNCGAQVHGRYCHICGQENIETHETMWGLITH
                     FVYDITHFDGKFFSTLKYLLLKPGFLSQEYMRGRRASYLHPIKMYVFTSALFFFVFFA
                     MRNEEDFIKSDGNELVQKRTAIIKRLVTATDQALIDSLKRELRISDTAIVQLEEMKMV
                     EKDPSIPDSVRAAIKPHLNNHRNNVNLVSFEGMPATEAKYDSIQNALPEQKRDGWLKH
                     YIIKKNLQLNAKFKYDSKSVLKAVMSKFLHSLPKMMFISLPFVAIFISLLYIRQRQSN
                     YVHHGILAIHNYIAMYIFILITILLGTLKGKLHWQLFTWLIVLLQLYMIYYNYKSFRN
                     FFGQKRGRTILKFTILSFLVMILFAILSAVFVINSLLSI"
     gene            1322..>1681
                     /locus_tag="VLL95_13205"
     CDS             1322..>1681
                     /locus_tag="VLL95_13205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39866.1"
                     /translation="MRFIMALILALFCYQLQAQYFLQHLVVAERSAEQFRQMKRNYIS
                     RMKAQSIEPDGQPSESFLIEQKVDASRNTVTTSTSSNFTGQSVMTSIYNGKGQVLEVS
                     DSSSSVVNHISYTYNQQG"
BASE COUNT          468 a          398 c          370 g          445 t
ORIGIN      
        1 cccatgggca ttgttcccgc aactcatcca ttattttagt cagccgctca aattgttcac
       61 ctgatcccat aatccgaaat ttttaaatac tcaacaatga attgatcaca aaaactgccg
      121 acaatatggc aaacaggatc atcaccagga aactcaggat agtgaatttc aggatggtgc
      181 gtcctcgttt ctgcccaaag aaatttcgga aactcttgta gttatagtaa atcatgtata
      241 actgcagcaa tacgatcaac caggtgaata gctgccaatg cagtttccct ttcaatgttc
      301 ccaacagtat ggtgatcaaa atgaaaatat acatggcgat atagttgtgg atcgccagta
      361 tgccatgatg tacatagttg gattgccgct gtcgtatgta caaaagcgag atgaatattg
      421 ccacaaacgg aagggagatg aacatcattt tgggcaggga atgcaggaat tttgacatga
      481 cggccttcag aacagatttg gagtcgtact tgaattttgc attcaattgg aggttcttct
      541 tgatgatgta atgcttcagc cacccgtctc gcttttgctc tggcaatgca ttctggatcg
      601 aatcatattt tgcttctgtt gcgggcatcc cttcaaaaga aacgaggttc acgttgtttc
      661 ggtgattgtt gagatgcggt ttgatggcag cccgaacaga atccgggata gatggatcct
      721 tctccaccat tttcatctct tccaattgca cgatggcagt atcagagatg cgcagttccc
      781 ttttcaagga atcgattaat gcctggtcag tggctgttac cagtcgtttg atgatggcag
      841 tccgcttctg caccaattca tttccatcag acttgatgaa atcctcttca ttgcgcatgg
      901 caaaaaacac aaaaaagaaa agcgccgaag tgaacacata cattttgatg gggtgcaggt
      961 aactggcccg tcggccccgc atgtattcct gcgaaagaaa gcccggcttc agcaagaggt
     1021 atttcagcgt gctgaagaac ttgccatcga agtgggtgat atcatataca aaatgcgtga
     1081 tcaggcccca catggtctcg tgggtttcaa tattttcctg cccgcaaatg tggcagtagc
     1141 ggccatgcac ctgggcaccg cagttcaggc aattcttctc ttttctttct ttggcgtgcg
     1201 acacgaaaca acaatgatta gtcccggaaa agtattacaa attacacagc ctttcagtgg
     1261 gaataattaa caacccgaaa ccaaccggca ccagctattt ttggcaaaat ttccccgact
     1321 gatgcgattt ataatggcac tgatcctggc gctgttctgc taccaactgc aggcccaata
     1381 ctttctgcaa cacctggtag tagcagagcg atctgccgag cagttcaggc aaatgaagcg
     1441 caactacata tcacgaatga aggcccagag cattgaacct gatggtcaac cgtcagaaag
     1501 cttcctgatt gagcaaaaag tggatgccag tcgcaatacc gtgaccacct ccacatcttc
     1561 caacttcacc ggccaatcgg ttatgaccag tatctacaat ggaaagggcc aggtactgga
     1621 agtgtctgat tcttcctcct ccgtagtcaa tcacatttca tacacctaca atcagcaggg
     1681 g
//
LOCUS       DATIQF010000772         2458 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_57974, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000772 DATIQF010000000
VERSION     DATIQF010000772.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2458
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57974"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..208
                     /locus_tag="VLL95_13210"
     CDS             <1..208
                     /locus_tag="VLL95_13210"
                     /inference="COORDINATES: protein motif:HMM:NF014416.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39867.1"
                     /translation="VFLTILILFIVGGEVTRGFAFAMLIGVVTGTYSSIFVAAPILVD
                     FAKGRPLGENAPAPAKAKPAAGKA"
     gene            362..769
                     /locus_tag="VLL95_13215"
     CDS             362..769
                     /locus_tag="VLL95_13215"
                     /inference="COORDINATES: protein motif:HMM:NF025589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4332 domain-containing protein"
                     /protein_id="HSR39868.1"
                     /translation="MSYKIVDIEGIGETYGHKLNLQGISTTGDLLDKCGTKQGRTAMA
                     AATHIPESLILTWVNHADLMRINGIAGQISELMEASGVDSVVELRTRNAANLHQKMLE
                     VNEQYGLSGKVPSEHELVQMIEQAKKMEPKVQH"
     gene            complement(778..2007)
                     /locus_tag="VLL95_13220"
                     /pseudo
     CDS             complement(778..2007)
                     /locus_tag="VLL95_13220"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
     gene            2210..>2458
                     /locus_tag="VLL95_13225"
     CDS             2210..>2458
                     /locus_tag="VLL95_13225"
                     /inference="COORDINATES: protein motif:HMM:NF024240.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSR39869.1"
                     /translation="MLSEISLHQDVLKDLRLTRVLLAVMIRIFLFVALITTAVSVCAQ
                     GNPLKADVLVVGGGTGGTAAAIASARAGAKTILVEEGPW"
BASE COUNT          630 a          591 c          572 g          665 t
ORIGIN      
        1 ggtgttcctt accatcctca tcctgttcat tgtgggtggt gaagtaaccc gtggattcgc
       61 cttcgcgatg ttgataggtg ttgttactgg tacctactct tccatttttg ttgccgcccc
      121 catcctggtt gacttcgcga aaggccgacc acttggcgaa aatgctcctg caccggccaa
      181 agcaaagccg gctgccggca aagcgtaaac cgactgcttg cttataggca tgaaaccact
      241 ctccttgcgg gagtggtttt tgcattacca gcaaattggc aggtcataat gatttgtaat
      301 cgtcatgatc tgaatatcca aaatgctgta cattggcatt aaaccagaaa caacgaggta
      361 tatgtcgtac aagattgtag atatcgaagg cattggagag acctacgggc acaaattgaa
      421 tttgcaggga atcagtacca ccggcgattt gctggacaaa tgcggaacca agcaaggccg
      481 tacggccatg gcagcggcaa cccatatacc ggaatcactg atcctgacct gggtgaacca
      541 tgccgacctg atgcgcatta acggtatagc tggccagata agcgaactga tggaggcatc
      601 gggtgtggac agcgtagttg aattgcgcac ccggaatgcg gccaacctgc accaaaaaat
      661 gctggaggta aatgagcaat atggtttgag tggcaaagtg ccatcagaac acgagttggt
      721 gcagatgata gaacaggcca aaaaaatgga acccaaagtt cagcactaat caataattta
      781 ctggatagtc ttcagcagtt tgtgacgggc cagcagggct cctcccacta cgccggcagt
      841 ttcacccatg cgtgacatgc gcaattgcgt atcgttgttc accaaaccaa gtgacagttt
      901 attgatggta ctgcgcatgg gcagtcgcag gtaatcgcct gtttgactga gcgtgcctcc
      961 tacgatcacc atttccgggt tgaaaatatt gatgaggaat gccatggccc tgcccagctt
     1021 ttcgcccagg ttggagagca gttctatgca aagtacatct tagttcaagg caccttctac
     1081 aatatcttcc aactgcacct cttcgacctt ttcaattttc tgcatcacca gtgagcttac
     1141 accactcgct actttttccc tgaattgccg gatcaatgcc caccccgaag cctctgtttc
     1201 caggcaaccc tttttgccgc agtggcaaat gatttcattc tggaacatgg gcacatggcc
     1261 tatttcacca ctgaaacctg atttgccata atacattttg ccatccgtca gaacacccag
     1321 tcccaggcca tagtccatat tcacaaaaag cgcattcgac acgtcatacg acgtactgcc
     1381 aaaaaactca ccataggcca tggcacggga atcgttttca atgaaagtgg tgataccaat
     1441 gtctttcttg aatgactcgg ccaatggcat ttcattgagg tggaaatagc tgtagctgta
     1501 gcccgtttgg gtattgatgc gaccgctgag gttgatgccc atggaaatga tggcgctggt
     1561 gtccactttc aggctgtcaa tgaattgcct gatgatacca atcaactgtt gataggctgc
     1621 ttcggtattg gtaagttcaa aagggatccg ttcatcaatc cggaccgtgc ttttcttgaa
     1681 atcgagcagg cctatattga tatggtaacg cctcacatcc actcccagga aatagcagga
     1741 ggatgccacc aggccaaata tgctggccct gcggcccccg gtgctgtcaa tcttcccctg
     1801 ctctgccagc aatccatcct ctatcagttc atttaccatg gaggtggttt tgggaatact
     1861 gatccctgaa aaggcactca aatcgggtat ggtactggat ccaaatgcat cgaggtagtt
     1921 gatgatctgc cgcttgagtg ccttgttttt gtaggcaact cccaccgaat cgtcgtcaag
     1981 aaatacttgt aaaacagtgt ttttcatgct gatgctgagc gccaatttcc ccaaacttca
     2041 ggtaacattt tcaggccgag tggcgcaatt ctttaaattt tttgatatta ctattattca
     2101 aaaatatttt tttatcattt tctgacactt tgtaaatact ttaattaagt ttacactgtt
     2161 aagtaacgtt ttttatttta acgacgaaaa caaatgggct gaaaaatctt tgctttctga
     2221 aatttccctg caccaggatg ttttgaaaga cctgcgattg acccgtgttt tgcttgctgt
     2281 tatgattaga atattcctct ttgtagcact cattacaacc gctgtaagtg tgtgcgcaca
     2341 aggaaaccca cttaaagcag atgtattggt agtgggtggt ggtaccggtg gaacggccgc
     2401 tgccatcgcc agtgcccgtg caggtgccaa aaccattttg gtggaagagg gtccctgg
//
LOCUS       DATIQF010000773         2866 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_255547,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000773 DATIQF010000000
VERSION     DATIQF010000773.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2866
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255547"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..751)
                     /locus_tag="VLL95_13230"
     CDS             complement(<1..751)
                     /locus_tag="VLL95_13230"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HSR39870.1"
                     /translation="MYLNCKTYFSWRYGTFATEALVQHAVEQGASALALTNINSTADV
                     WDFVDFCGQHGIRPIAGVEVRNSFDDTTPASEKLLYILLAKNNDGFQAINHWLSVHLQ
                     GKQPFPAEAPLLDHVWALYPLGAKAVDVLQAHELIGVLPAEVNKLYNVPVAKHASKFV
                     IRQPVTFKDKTFYNLHRLLRAIDQNTLLSKLDAKYTASPDEILLPPAKLMEAFRQYPS
                     LITNTLQLMDTCSIDIEFHTDKNKQCFSATKE"
     gene            1008..1568
                     /locus_tag="VLL95_13235"
     CDS             1008..1568
                     /locus_tag="VLL95_13235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39871.1"
                     /translation="MANRHTIQSAISIFIFMAAGYLTKAQKTDRFLELRGGDSVWVIK
                     TSLLSRSKFFIGNQRVNFTIWQDHLQEEDVEISKFIKKGTGLRRASTGIVLGGLAAIT
                     AGIIIQSNSQASGNVNEEKRTVGRVTTGLGIAATGVALLLGQQAWAFYHKAMRLYNNK
                     VLQPPKQQLSINLLIDLSMASIQIRW"
     gene            1627..2217
                     /locus_tag="VLL95_13240"
     CDS             1627..2217
                     /locus_tag="VLL95_13240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39872.1"
                     /translation="MLAGNKIVMHIRQIVHFSLLSIIMMAYGQVAKAQKKTDKFLKYR
                     DADSVWSVTEGFWFPSRFYIGDTRVKFRTWRDHLKLADEEVGTLMKKGMATQRTGNWI
                     GISGFAVTLAGLRMAQVNSRSWGVPNEQKQTIGYIIAGVGTIATIVGLEMNFKAYRLY
                     ASGERLFNNKVRQGKLQPITLQLRAGPTQSSIIVGW"
     gene            complement(2270..>2866)
                     /locus_tag="VLL95_13245"
     CDS             complement(2270..>2866)
                     /locus_tag="VLL95_13245"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HSR39873.1"
                     /translation="PNTGGPGFVSFNRYYFAQQDKEGAVIDERFNGGGLLDDYMVDLM
                     TRSLRAALTNEVPGGKPMKLPAGILGPKVLLINELGGSGGDFFPWVFRQQKAGPLIGA
                     RTWGGLVKSSVHYALVDGGALTAPDNAVFDPINRKWVAENEGVPPDIEVRQDAKSLQA
                     GRDPQLERAVKEVLQMLSKQPGIEVKPPPFSTPVKTKN"
BASE COUNT          812 a          664 c          687 g          703 t
ORIGIN      
        1 cttctttggt agcgctgaag cattgcttgt ttttatcggt atgaaattcg atgtcgatgc
       61 tgcaggtatc catcagctgc agcgtgttgg taatgaggga aggatattgc cggaaggcct
      121 ccatcagttt ggccggtggc agcagtattt catcgggcga agcagtatac ttcgcatcga
      181 gcttgctgag caatgtattc tgatcaatgg cccgcagcag gcggtgcagg ttgtaaaagg
      241 ttttgtcttt aaaagttacc ggctggcgga tcacaaattt ggaagcatgc tttgctaccg
      301 gcacgttgta caatttgttg acctcggcgg gcaatacacc aatcaattca tgcgcctgca
      361 atacatctac cgccttcgcc cctaatggat aaagggccca aacatgatcg agcagcggcg
      421 cttcggccgg aaagggttgc ttgccttgca aatgcacgct cagccaatgg ttgatggcct
      481 gaaagccatc attgtttttg gcgagcaaaa tgtacagcag cttttcgctg gccggtgtcg
      541 tatcgtcaaa actgttgcgc acttccacgc cggcaatggg cctgatgcca tgttgcccgc
      601 agaagtccac aaagtcccac acatcggccg tgctgttgat attggtaagc gccagcgccg
      661 atgcgccctg ctccaccgca tgctgcacca atgcctcggt ggcaaacgtg ccatagcgcc
      721 agctgaaata ggttttacaa ttgagataca tacttactcc ccatggctcc cgggagccac
      781 attgcaaagg tgatacttta ctaacttatt tagcattttg gggataacaa aaaaatccag
      841 ttacccgttc agttaaaata aacacgagcc caatgggctg ccgggcgtat gcggggtgct
      901 tataaggctt cccccacagc acgatattta gatgagtcgg aaaataagca ctccgaaaaa
      961 cagttactgc atatatagag aggcatattt tcatcaaaat atcttcgatg gcaaaccgtc
     1021 atacaatcca aagtgcaata tcaatattca tttttatggc cgccggatac ctgacaaaag
     1081 cccaaaaaac cgaccgcttt ttggagttga ggggtggaga cagtgtttgg gtaataaaaa
     1141 ccagtctatt atctcgtagc aaatttttta ttggcaacca gcgggtgaac ttcactatct
     1201 ggcaagatca tttgcaggag gaagatgtgg aaattagcaa attcattaaa aaaggtacag
     1261 gtttaagaag ggcaagtacc ggaatagttt tgggtggatt ggcagccatt acggctggca
     1321 tcattataca atcaaatagc caagcatcgg gaaatgtaaa tgaagaaaaa cgaacggtcg
     1381 gcagagtaac cacaggcttg ggaatagccg ctaccggtgt agccctgttg ttggggcaac
     1441 aggcatgggc attctatcac aaagcgatgc gattatacaa caacaaagtg cttcaaccac
     1501 caaaacagca actatccata aatctgctta tagatctttc catggcatcg atacaaataa
     1561 gatggtagat actaaagcaa aatatcacga ccacccattt actcattagc acaaattgga
     1621 agcaacatgt tagctggaaa taaaattgta atgcacattc gccaaatagt tcatttctcc
     1681 ttgttatcca ttataatgat ggcttacgga caggttgcga aagcccaaaa aaaaaccgac
     1741 aagtttttga agtatagaga tgcagacagc gtttggtcgg ttaccgaagg attttggttc
     1801 ccgtcgcgat tttatatagg agatacccgg gtgaaatttc gaacctggcg cgaccacctg
     1861 aagctggcag atgaggaagt aggtacgctg atgaaaaaag gaatggctac tcaaagaaca
     1921 ggtaactgga ttggcataag cggctttgcc gtcacacttg caggactaag aatggcacag
     1981 gtaaatagcc gatcctgggg tgtaccaaac gaacaaaagc agacaattgg ctacataatt
     2041 gccggtgtag gtacaatagc cacgatagtt ggtttagaaa tgaattttaa agcctacagg
     2101 ctttatgcca gcggagaacg cttgttcaat aataaggtgc gacaaggaaa actacaaccc
     2161 attactcttc agctacgggc aggcccaact cagtccagca tcatagtagg gtggtaaaga
     2221 aatattttag aaaaaaatgc aggctacaaa aacctgcatt tttttatccc taattctttg
     2281 ttttcacggg tgttgaaaat ggaggaggtt tcacctcaat accaggttgt ttactcagca
     2341 tttgcagcac ttcttttact gctctttcca attgcggatc gcggccggcc tgcaggcttt
     2401 tggcatcctg gcgcacttca atatccggcg gcacgccttc attctcagcc acccacttgc
     2461 gattgatggg atcgaatacc gcattatcag gagcggtaag cgctccgcca tcaaccaatg
     2521 catagtgtac acttgacttt accaggccac cccaggtacg ggcaccaatc aatggccctg
     2581 ccttttgctg gcgaaatacc caggggaaga aatcgccacc ggaaccgccc agttcattaa
     2641 tgagcaacac tttgggtccg agtatgccgg caggcaattt catgggcttg ccaccgggca
     2701 cttcgttggt aagggcggca cgaaggctgc gggtcatcag gtccaccatg taatcatcga
     2761 gcaaaccacc gccattgaag cgttcatcaa ttacagcgcc ttctttatcc tgctgcgcaa
     2821 aatagtaacg gttgaagctt acgaatccag gaccaccggt attggg
//
LOCUS       DATIQF010000774         4129 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_285744,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000774 DATIQF010000000
VERSION     DATIQF010000774.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4129
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285744"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1210
                     /locus_tag="VLL95_13250"
     CDS             <1..1210
                     /locus_tag="VLL95_13250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39874.1"
                     /translation="SGSRTDTLQLYRDSLHFKVSFRNLSAVAYADSLQVQVQLEDSLG
                     NITPVTSYKARALAGGDSIQVYAYMPLTNQQMVGSRKLRVSVNGQGQQPETELSDNTL
                     YYDFFVSWDGAIPGYKIYNGTGNWSEDAKWLPVGQPTCNDKVIINGNCTVDIATAVSD
                     TLLVNASGLLQLSQPVAKLNIGCSEVGGNKLATIKGSLVVTAGTLHLNGGLLIESGAS
                     LQQSGGTIILDPNADNQCNSLNIGQSTLASAPTPYATLCIGGPDPVNGSYTLGTPFST
                     GSVSFSGGSLVFVDPPISPDALSLYWNQAGAGSITYDPAHTTIFGGNQLSAINTGSAS
                     HFRVMNSATSSLGQASMGSVIIRTALVPQREVVMEGSSAYILWVIGQLFVEENSILRV
                     KAPVDLRVNQ"
     gene            1314..2414
                     /locus_tag="VLL95_13255"
     CDS             1314..2414
                     /locus_tag="VLL95_13255"
                     /inference="COORDINATES: protein motif:HMM:NF033709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PorV/PorQ family protein"
                     /protein_id="HSR39875.1"
                     /translation="MRFLGLLLLASLTMLSPAKAQFRKYSNEFLNIGAGARALGMGGA
                     NITSSKDATAGYWNPANLTGVKDHPNLALMHAEYFSGIGKYDFGSLAIPLQNNSRTLG
                     LTFLRFGIDDIPNTLYLIEPDGTPNYNNIETFSSADYAFMVSYAQTLKETEDSKLSLG
                     GNVKVIHRNVGSFAKAWGFGIDLGVNYQRKNWSLAAVLRDATTTFNMWSFNFSEREKE
                     ALYLTRNEIPQSSTEITAPRLLLGGTYRFSFSEKVKLLAELQLDNTFDGKRNTLIKTD
                     FISIDPRLGIELDVSDMFFVRGGVSNFQQALKDGDTTNLQKTWIFQPSAGAGFRINNV
                     HVDYAFTNLANQTAPLYTHVISIAFAIRKKEK"
     gene            2434..>4129
                     /locus_tag="VLL95_13260"
     CDS             2434..>4129
                     /locus_tag="VLL95_13260"
                     /inference="COORDINATES: protein motif:HMM:NF013524.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C25 family cysteine peptidase"
                     /protein_id="HSR39876.1"
                     /translation="MQLRSLTISMFALFVSLGSKAQFNNEWIDYSKPYYKFYIAQAGI
                     YRINKSTLDAAGIGATPAEHFQLWRNGKQLPLYTSILQGPLTSSDYIEFFGDKNDGVI
                     DKALYRNPNDHITDQTSLFTDTAAYFLTVNPNTASNLRYSTITNDAGSSALTPLPNVW
                     KLVRHDYKNIVNGVHRNYVNRGTAVDFGELVYSSSYELGEMMSSGDIFPSTANQAAVF
                     SNLLPYTAGSSQAKVRVSIAGSANNNRTVRIDLNGAPIFDRNYNRFQARIDSANIAVG
                     LLNNANTVIGVTNLSANPNDRVVAGFAEIDYARLPDAANSSLFDFYLPPAAQPSLVEI
                     ANFNHGNQPPTLYDVGTGLRMQGQLAPDGKVRFLLPASSTTRKCWLVSNAASRNINAL
                     VQKTFTAFTSGSNQANYIIITNRVLTQGNNNAVEQYRQYRSSATGGGFTTRIYFIDEL
                     VDQFAFGIKMHPLSIKNFLRFARARFSPAPQYCLLIGKGVTYDEYRFYENHPLANTLN
                     LVPTFGYPASDVLLSSEDLTAAQTTIGIGRINAVNASEVSTYLEKIKEFEAAQANPS"
BASE COUNT         1104 a         1057 c          959 g         1009 t
ORIGIN      
        1 aagtggttcc aggactgata cactccaatt gtatcgtgac agcctgcatt tcaaagtatc
       61 tttccgcaac ctcagtgctg ttgcctatgc cgacagcctg caggtacagg tacagttaga
      121 agactccctg ggcaatatca caccggtaac atcttacaaa gccagggctt tggctggagg
      181 agattccata caggtgtatg cttatatgcc acttaccaat cagcaaatgg tgggcagtag
      241 aaaactccgt gtctcagtaa atggacaagg acagcagccg gaaactgagt tgtctgacaa
      301 tacactttac tacgactttt ttgtgagttg ggatggtgcg ataccggggt ataaaattta
      361 taatggaacc ggcaactgga gcgaggatgc caaatggctt ccggtgggac agcccacttg
      421 caatgacaaa gtgatcatca atggcaattg tactgttgac atagccacgg cagtttcaga
      481 caccttgttg gtgaatgcca gcggcctgtt gcaactcagc caacctgtgg ccaaactaaa
      541 tattgggtgc agtgaagtgg gcggcaacaa attggcaaca ataaaaggct cactggttgt
      601 gaccgcagga accctgcacc tgaacggtgg attgttgatt gaatcaggtg ccagcctgca
      661 gcaaagtggt ggcaccataa tactcgatcc gaatgccgac aaccagtgca attcgctcaa
      721 cattgggcaa tcaactctgg cctctgcccc tactccttat gcaactttgt gcattggtgg
      781 ccccgaccct gtgaatggct cctatacatt gggaacgcca tttagtacag gttcggtcag
      841 tttcagcgga ggctcgctgg tgtttgttga tcctcccata tcgccggatg ctttgagttt
      901 gtactggaac caggccgggg caggaagcat cacctacgat ccggcacata ccaccatttt
      961 cggaggcaac cagctatcgg ccatcaatac aggcagtgct tcccatttca gggtgatgaa
     1021 cagcgctacc agttccttgg ggcaggcatc catgggaagc gtcatcattc gtacggcatt
     1081 ggtgccgcaa agggaggtgg tgatggaagg cagctcagcc tatatcctct gggtgatcgg
     1141 tcaactgttt gtggaagaaa attccatcct ccgggtgaaa gcgccggtgg acctgcgtgt
     1201 gaaccaatag ccagtttgtg tataatatgc tgtccaaaaa aagctgggct tgcattcaag
     1261 aatatagctt taaccgcgtt aacgaattga tacgaataaa acaaaatcgc agcatgagat
     1321 tcctgggcct tctgctattg gctagcctca ccatgttgtc gccggcaaag gcacagtttc
     1381 gcaaatattc caatgagttc ctcaacatag gtgcaggagc aagggcattg ggtatgggcg
     1441 gcgccaatat aacttcctcc aaagatgcca ctgcaggtta ctggaacccg gccaatctta
     1501 ccggcgtaaa agatcatccg aacctggcat tgatgcatgc tgagtatttc tccggcatcg
     1561 gcaagtatga ttttggcagc ctggccattc cgctacaaaa caacagccgg acattgggcc
     1621 tgacctttct tcgtttcggt attgacgaca ttcccaacac cctttacctc attgaacctg
     1681 atggcacgcc gaattacaat aacatcgaaa ccttttcctc ggcggattac gctttcatgg
     1741 tcagctatgc ccaaacgctg aaagaaacag aggattcaaa actctcgctg ggtggtaatg
     1801 taaaagtgat ccaccgcaat gtgggttcct ttgcaaaggc ctggggattt ggcatcgatc
     1861 ttggggtgaa ctaccagcgc aaaaattgga gccttgccgc tgtactgcgt gatgccacca
     1921 ccaccttcaa tatgtggtca ttcaatttca gcgaaagaga aaaggaagcc ctgtacctca
     1981 cccgcaatga aataccacaa tcgagtaccg aaataacagc tccaagattg ctcctcggag
     2041 gtacttaccg gttttcattt tccgaaaaag tgaaactgct ggcggaacta caactggaca
     2101 acacgtttga tggcaaaaga aacacgctga tcaaaactga cttcatcagc attgaccccc
     2161 ggcttggaat tgaactggat gtgtcagaca tgttttttgt acgaggcggt gtaagcaatt
     2221 ttcaacaagc gctgaaagat ggagacacca caaaccttca aaagacctgg attttccaac
     2281 cttcagcagg tgctggcttc cgcatcaata atgtgcatgt cgactacgcc ttcaccaacc
     2341 tggccaacca aacagcacca ctgtacacac atgtcatctc cattgctttt gctattcgca
     2401 aaaaagaaaa ataacgctat tgatacctgc attatgcaac tccgaagtct gacgatatcg
     2461 atgttcgctc tgtttgtttc actgggtagt aaggcccagt tcaacaatga gtggattgac
     2521 tacagcaaac cctattacaa attctatatt gcccaggctg gcatttatcg catcaacaaa
     2581 tccacccttg atgccgctgg tattggcgct acaccggccg agcattttca attgtggcgc
     2641 aatggcaaac aattgccgct gtataccagc attttgcaag gaccactgac cagcagcgat
     2701 tacatagaat tttttggcga caagaatgac ggcgttatcg acaaagccct ctatcgcaac
     2761 cccaatgacc atatcacaga tcagacaagt ttgtttaccg ataccgccgc ctatttcctt
     2821 acagtaaatc ccaacacggc ttccaacctg cggtacagta cgatcaccaa cgatgccggc
     2881 agttctgcat tgacgccgtt gcccaatgtg tggaagttgg ttcgacacga ttataaaaac
     2941 attgtaaatg gtgtacaccg taattatgtg aacaggggca ctgctgttga cttcggcgaa
     3001 ttggtttatt cttcctctta cgagttgggt gaaatgatgt caagcggcga catttttccc
     3061 agcacggcca accaggctgc agtattcagc aatttgctgc catacacggc aggtagcagc
     3121 caggccaaag tgcgggtatc tattgccggc tcggccaaca acaaccgaac cgtccgcatt
     3181 gacctaaatg gcgctcccat ttttgatcgc aactacaaca ggttccaggc cagaattgat
     3241 tcagccaaca ttgcagttgg tcttttgaac aatgccaata cagtcattgg tgttaccaac
     3301 ctttctgcca atcccaacga ccgtgtggta gctggttttg cagaaatcga ctatgcccgt
     3361 ttgcccgatg ctgccaacag cagcctgttc gatttctatt tgccaccggc agcgcaacca
     3421 tcgctagtag aaattgccaa ctttaaccac ggcaaccagc caccaaccct ttacgacgtt
     3481 ggcactggcc tgcgaatgca agggcaactg gcgccggatg gcaaagtgcg ctttttactt
     3541 cctgcctcat ctacaacccg gaaatgctgg ctggtgagca acgcagcgtc gcgaaacatt
     3601 aatgccctgg tacaaaaaac atttacagct ttcacatcag gcagcaacca ggccaactac
     3661 atcatcatca ccaatcgtgt tttaacacaa ggcaacaaca atgcagttga gcaataccga
     3721 caatacagaa gcagtgcgac gggtggaggt tttaccaccc gtatttactt cattgatgaa
     3781 ttggtagatc agtttgcctt tggcataaag atgcacccgc tgtcaattaa gaactttctt
     3841 cgttttgcaa gggcccgatt ctctcctgcc cctcaatatt gtttgctcat tggaaagggt
     3901 gttacctatg atgaataccg gttctatgaa aatcacccct tggccaatac gctcaacctc
     3961 gttccgacct ttggctatcc ggcatccgat gtattgctgt cgagcgaaga ccttactgct
     4021 gcccagacca cgattggcat tggcaggatc aatgcagtga atgccagtga ggtgagtacc
     4081 tacctcgaga agataaagga atttgaagct gcgcaggcca accccagca
//
LOCUS       DATIQF010000775         5849 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_210232,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000775 DATIQF010000000
VERSION     DATIQF010000775.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5849)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5849
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210232"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2159)
                     /locus_tag="VLL95_13265"
     CDS             complement(<1..2159)
                     /locus_tag="VLL95_13265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39877.1"
                     /translation="MKKLIASSALLLSQLAWSQSEALWLRYPSISPDGSTIVFTYKGD
                     LYKVSSRGGTATPLTLHAAHDYMPVWSPDGKQIAFASDRYGNFDIFVMPATGGEAKRL
                     TYHSANESPFSFTADGNAVLFGAARMDAASNRQFPTGSMPELYSVPAAGGRASQVLTT
                     PAEDVKSSADGKLLFYHDKKGGENAWRKHHVSAITRDVWVYDAAAGSHKKLTSFAGED
                     RNPVLADGGKSIYYLSEASGSFNVYKMNADGSNAQAVTNFKTHPVRFLSGANDGTLCF
                     SYDGSLYTLNNGKSQKLSVTIAADVHSSNETNVPVGGNVSDMRLSPNGKEVAFIYRGD
                     VFVSNADGSGTKQVTKTPQPEKEITWHADGRILAYSSERNGKWAIYKSEIVRKEEPYF
                     FASTLIKETLLVGGDKSVLNPEFSPNGKELSYTENFNTLKVLTLAGNQSRTLIAPKEW
                     LSWGDGGHEVSWSPDSKWLLVSFAEQGIGNGEVGILSADGKTKLTNISQNGFGDGNPK
                     WMMGGKMMLWFSDRDGLAAKANSGGSQMDAYGLFFTQDAWDNFRLSKEEAALAKEMKE
                     KAEKADTSKKAKPAKDSVIIDWAGLDQRKARLTIHSSSMNDALVDKDGENLYYLARFE
                     RGLNLWTTNLRTRETRILAPLGAMGAGNMQWDKDGKKIFLQTDGGIAKIDAASGKVDR
                     ISISGDMQLNAAAEREVMFDHVWRRTNDIFYKSGFHG"
     gene            2336..3190
                     /locus_tag="VLL95_13270"
     CDS             2336..3190
                     /locus_tag="VLL95_13270"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HSR39878.1"
                     /translation="MDQRIINLYDEYTHKPLNRSVFLKRLATLVGSTTAALAILPQLE
                     GNYAIAQTLEGDAELETERITYKVEGGDMKAYLAKPKKKGKFPGVIVIHENRGLNAHI
                     EDVTRRAAKAGYIAIGVDALSLLGGTPANEDEARAMFQKLDAKQTIANFAAAVPYLKS
                     RKDCTGKVGCVGFCWGGAMANNLAVNAPDLKAAVAFYGRQPEAADVPKIKAAVQLHYA
                     SLDERINAGIPAYEAALKANNIPYELYQYEGVNHAFHNDTSAARYNAAAAKLAWERTL
                     AFWKKHLS"
     gene            complement(3260..3877)
                     /locus_tag="VLL95_13275"
     CDS             complement(3260..3877)
                     /locus_tag="VLL95_13275"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSR39879.1"
                     /translation="MELCGHCQPIPGNDGGEGIEEFGGADVNDVLNLLPLLDKHPKAD
                     TSRIGIEGTSRGGMMTYLTLKRSCRFKAAAVTAGMANAFLNTKARPEMDKNVFGELVP
                     GYASNREEALKQRSAVFWAEQLCKTTPLLLLHGSSDWRVLPEESLELVQKLYQARHPL
                     RFIFFEGADHGINEWRGERMLQMKRHFDYYVRDRNSWPSMEKHGN"
     gene            complement(3820..4209)
                     /locus_tag="VLL95_13280"
     CDS             complement(3820..4209)
                     /locus_tag="VLL95_13280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39880.1"
                     /translation="MKSLLSMLFTIICLLAYAQDGSIVQKTALTIHDSTWNRLQNADA
                     ALAQRIRDSVAFYKITYMSDGLKVTAYMAEPKAAGVYPCIISNRGGNRDFGQWNPWSI
                     TRFLGHMASWNYVVIASQYRAMMAVKE"
     gene            complement(4234..4587)
                     /locus_tag="VLL95_13285"
     CDS             complement(4234..4587)
                     /locus_tag="VLL95_13285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39881.1"
                     /translation="MAEDQPKLPDPEGEKQESSPPGSPVAADATESPLSEPGMETESQ
                     PNQTLHENVEVHHHAHHDHGKKSWKSYFWEFLMLFLAVFCEFLAECQREHKLEKERGR
                     QSTCMGPCLIIIPAQ"
     gene            complement(4619..5596)
                     /locus_tag="VLL95_13290"
     CDS             complement(4619..5596)
                     /locus_tag="VLL95_13290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39882.1"
                     /translation="MDAKAPAGNLNTNQIAPLNNCNMTEEQPKEPLPGEEPGNNSSSE
                     NRGAGSDSYLSSTEAESEEPSISNESSSTESAMEVHHHAHHDHGKKSWKSYFWEFLML
                     FLAVFCGFLAEYALEHKIEHDREEQFMSSLVEDLLKDTTQMNEVIGLGRNQRSKLDSL
                     LQLLNADEQENGFIEKVYMLQANSTRVVNMEFENRTSSQLKNAGGMRLIRQAAVVDSI
                     LRYWANTAVADNISARLERLNKVRGDISAKLFHQKYLIRNSEHPFSPIQGVRTDARLI
                     DDNPALLAEFANRSSSRRTVLENYLRILTVMKEQATQLARQIQQAYDLN"
BASE COUNT         1344 a         1516 c         1453 g         1536 t
ORIGIN      
        1 atgccatgga aaccactctt gtaaaaaata tcattggtcc tgcgccacac gtgatcaaac
       61 atcacttcgc gttcagcagc cgcattcagt tgcatatcgc cgctgatgct gatgcgatca
      121 accttgccgc tggccgcatc aattttggca atgccgccat ccgtttgcag gaagatcttc
      181 ttgccgtctt tgtcccactg catattgccg gcgcccatgg cacccagcgg cgccaggatc
      241 ctggtttcgc gggtacgcag gttggtggtc cacaaattca aacctctttc aaagcgggcc
      301 aggtaataca ggttctcgcc atccttatcc accagtgcat cattcatgct gctgctgtga
      361 atggtaagac gtgccttgcg ttggtcgaga cccgcccaat cgatgatcac actgtctttg
      421 gcaggctttg cttttttgct ggtgtcggct ttttcggctt tctctttcat ttccttcgcc
      481 agcgcagctt cttctttgct cagccggaaa ttgtcccatg catcctgcgt aaagaacaga
      541 ccgtaggcgt ccatttgcga gccgccgctg ttggccttgg cggccaaacc atcgcggtcg
      601 ctgaaccaca acatcatttt gccacccatc atccacttgg ggttgccatc gccaaaacca
      661 ttttgagaaa tgttggtgag tttggttttg ccatcggcgc tcagaatgcc tacttcacca
      721 ttgccaatgc cttgttcggc aaagcttacc agcagccatt tgctgtcggg gctccagctt
      781 acttcgtggc cgccatcgcc ccagctcagc cattctttgg gggcaatgag ggtgcggctt
      841 tgattgccgg ccagggtcag cactttgagc gtattgaaat tctctgtgta ggaaagttct
      901 ttgccattgg ggctgaactc aggattcagc acactcttgt cgccacccac caacaatgtt
      961 tctttgataa gcgtgctggc gaaaaagtag ggttcctctt tgcgaacgat ttcgcttttg
     1021 tagatggccc atttgccatt gcgttcgctg ctgtaagcca gtattctgcc atcggcatgc
     1081 caggtaattt ccttttcagg ctgaggcgtt ttggttacct gcttggtacc gctgccgtcg
     1141 gcattgctta caaacacatc gccacggtaa atgaaggcga cttctttgcc attgggcgac
     1201 aagcgcatgt cgcttacatt gccgcccacc ggtacattgg tttcattgct gctgtgtaca
     1261 tcggcggcaa tggttacact cagcttctgg cttttgccat tgttgagcgt gtacagagag
     1321 ccatcgtagc tgaagcaaag ggtgccatca ttggcaccgc tcaaaaagcg caccgggtgc
     1381 gttttgaaat tcgtaacggc ctgcgcattg ctgccgtcgg cattcatttt atacacgttg
     1441 aagctgccac tcgcctcgct gagatagtaa atgcttttgc caccatctgc cagcacgggg
     1501 ttgcggtctt caccggcaaa gctggtgagt tttttatgcg aacccgcagc ggcatcgtat
     1561 acccatacat cacgggtgat ggcgcttaca tggtgtttgc gccaggcatt ctcgccacct
     1621 ttcttatcgt ggtaaaaaag cagcttgcca tcggcactgg atttcacatc ctcggcggga
     1681 gtggtgagca cctgcgaggc gcggccacca gctgcgggca cgctgtacaa ttcgggcatg
     1741 ctgccggtgg gaaactgccg gttgctggca gcatccatac gggcggcgcc aaacagtacc
     1801 gcgtttccat ctgctgtaaa actgaacggc gattcgttgg cactgtggta ggtgaggcgc
     1861 ttggcttcgc caccggtggc cggcatcacg aaaatgtcga agttgccata gcggtcgctg
     1921 gcaaaagcga tctgtttgcc atcggggctc cacacaggca tgtagtcgtg ggcggcgtgc
     1981 agggtaaggg gcgtggcggt accaccacgg ctgctcacct tgtacaaatc gcctttgtag
     2041 gtaaagacaa tggtgctgcc atcgggcgaa atactgggat agcgcagcca caaagcttcc
     2101 gattgcgacc aggcaagctg gctcaacagc aaggcagaag aggcaatgag ttttttcata
     2161 tgaataatag cagtttgtag aacggtaaat gtaaggcaag gctccctgtg cagaatggat
     2221 tgtgctattc cattatgata agcggcggga tggtaaattt ttatgggcca tgcaagcatt
     2281 ccatttgcag atggcgtcta aatgtttcat cttgttcatt ctaaaaccaa ttgccatgga
     2341 ccaacgcatc atcaacctct acgacgaata cacccacaaa ccactgaacc ggtcggtatt
     2401 tctgaaacgg ctggctacgc tggtgggcag taccaccgcc gccctggcca tactgccgca
     2461 gttggaaggc aactacgcca tcgcccaaac cctggagggc gatgccgaat tggaaacgga
     2521 gcgtattacc tacaaagtgg aaggcggcga catgaaggcc tacctggcaa agcctaagaa
     2581 aaaaggcaag ttcccgggcg tgatcgtgat ccatgaaaac cgcggactga atgcgcatat
     2641 tgaagacgta acgcggaggg ctgccaaagc cggttacatt gccattggag tggatgcttt
     2701 atcgctgctg ggtggaacgc ctgccaatga agatgaagcg agggccatgt tccaaaagct
     2761 ggatgccaaa caaaccattg ccaattttgc cgcggcggtg ccctacctca aaagccgcaa
     2821 ggactgcacg ggcaaagtgg gttgtgtggg cttctgctgg ggtggcgcca tggccaacaa
     2881 cctggccgtg aacgcacctg accttaaagc cgctgtggca ttttatggcc gacagcccga
     2941 ggctgccgat gtgcccaaaa taaaagccgc cgtacagctg cattatgcca gccttgacga
     3001 aagaatcaat gccggcatcc cggcttacga ggcggcgctc aaagccaaca acatacccta
     3061 cgaactttac cagtatgaag gcgtgaacca cgcttttcac aacgacactt ctgcagcccg
     3121 gtacaatgca gccgcggcta aactggcctg ggaaaggaca ttggcttttt ggaagaaaca
     3181 tttgtcctga aaccatattc attcttcgcc taaaaaaatc cgctccaaac cgggcggatt
     3241 tttttaggcc aattcatttc tagtttccat gcttttccat agatggccat gagtttcgat
     3301 ccctgacata gtaatcaaaa tgccgcttca tttgcagcat ccgctccccc cgccattcat
     3361 tgatgccatg atctgcacct tcaaaaaata tgaagcgtaa tggatgtctg gcttggtaga
     3421 gcttctgcac cagttcgagg ctttcttccg gtaaaactct ccagtccgaa cttccatgca
     3481 acaacagcag cggagtggtc ttgcatagtt gctctgccca gaatactgca gatctttgct
     3541 ttaatgcctc ctcccggttg ctggcatagc cgggcaccaa ctcgccaaac acatttttat
     3601 ccatttcggg ccttgctttg gtattaagaa atgcattggc cattccggca gtaactgctg
     3661 cagctttgaa gcggcaagaa cgcttgagcg ttagataggt catcatacca ccccgactgg
     3721 taccttctat tcctattcgc gaagtgtcgg ctttgggatg cttgtctaac aatggcaata
     3781 agttgagtac atcattcaca tcggcaccgc caaattcttc tattccttca ccgccatcat
     3841 tgcccggtat tggctggcaa tgaccacata gttccaactg gccatatggc ccaaaaaacg
     3901 ggtaatgctc catggattcc actgcccaaa atcgcggttg cctccacgat tggaaatgat
     3961 acaaggataa acgccagccg ctttgggctc ggccatgtag gccgttacct tcagcccatc
     4021 ggacatatat gtgatcttgt aaaaggcgac gctgtccctg attctttgcg ccaatgcggc
     4081 atcggcattt tgcagcctgt tccaggtact gtcgtgtatg gttagtgctg ttttctgcac
     4141 aatgctgcca tcctgtgcat aggcaagaag gcaaatgatc gtaaaaagca tgctcagtaa
     4201 agatttcata ccatcaggat tttggtgacc ggatcattga gccggaatga tgatcaaaca
     4261 agggcccatg caagtcgatt gccggcctct ttccttttct agtttatgct cccgttggca
     4321 ctctgccagg aattcgcaga acacagccag aaacaacatg aggaattccc agaaataaga
     4381 tttccagctc tttttgccat ggtcatgatg ggcgtggtga tgtacttcca cattttcatg
     4441 aagtgtttgg ttgggttgtg attctgtttc catgccgggt tcggataaag gcgactccgt
     4501 agcatcagct gcaactggtg aaccaggtgg agatgattcc tgcttttctc cttccgggtc
     4561 aggaagtttt ggttgatctt cggccatgag tccaacagat taatgcaatt tctaatggtc
     4621 agttcaaatc gtatgcttgt tgaatttgtc ttgctaattg tgttgcctgt tccttcataa
     4681 cagtaaggat gcgcaggtaa ttttccaaca ctgttcgccg gctggaactc cggtttgcaa
     4741 attctgccag aagtgccggg ttatcgtcta tcagcctggc atcggttctt acgccttgaa
     4801 tgggactgaa cggatgttcg ctgttgcgta ttaaatactt ctggtgaaaa agttttgccg
     4861 aaatatcacc cctcaccttg ttgagacgct caagccttgc tgaaatattg tctgcaactg
     4921 ctgtgttggc ccaatacctg agaatcgaat caacgacagc ggcctgtctg ataaggcgca
     4981 taccgccagc attttttaac tgactcgagg tgcggttttc aaactccatg tttaccactc
     5041 ttgtggaatt ggcctgcagc atgtaaacct tttcgataaa tccattttcc tgctcatcgg
     5101 cattgagcaa ctgcaaaagt gaatccagct tggatctttg attcctgccc aaacctatta
     5161 cttcattcat ctgggtagta tcctttagta aatcttccac caggctggac atgaattgct
     5221 cttcccggtc gtgctctatt ttgtgctcta gggcgtattc cgccaaaaag ccacagaaca
     5281 cggcgaggaa aagcatcagg aattcccaga aataagattt ccagctcttt ttgccgtggt
     5341 catgatgggc gtggtgatgt acttccatag cagattccgt tgatgatgat tcgttagata
     5401 ttgaaggctc ttcgctttca gcttcagtgc tggataaata ggagtcgcta cctgcccccc
     5461 tgttttctga agaagagttg ttaccaggtt cctctccagg caatggttct ttcggttgtt
     5521 cctcagtcat gttgcaatta ttaagtgggg caatctggtt agtattcaga ttgcctgcag
     5581 gggctttcgc atccaatcta cttgatatac aggaaagttg caatagaaga aatgattcag
     5641 cgtcacatac cagatggcaa gcaatcaaaa aaaggcgccg attgatcagc gcctttcaca
     5701 aaaaattcaa tggattatcc tcacttccct gccggcttat ccgccttggt attcggtgtc
     5761 agcaactgga agaactgatc gagctcggga agcaccacaa tgcgggtacg gcggttggca
     5821 gcacggccag tagcggtacc attgctgct
//
LOCUS       DATIQF010000776         4263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_27721, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000776 DATIQF010000000
VERSION     DATIQF010000776.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4263
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27721"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..530)
                     /locus_tag="VLL95_13295"
     CDS             complement(<1..530)
                     /locus_tag="VLL95_13295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39883.1"
                     /translation="MKSIIQPLLIVSALSLLVACRKGISDRSQEFPALNPAKTDINAG
                     TWKTMLLTAPDEVAVTAPAAPTGPDYTAQINEIKSLQARLDDRGRDQLNYWSAGAVLR
                     WNEITRELVAKYNLPPVNNPDGSYPVPDANNPLAYPLFPFANPPYSARAYAYVSAAVY
                     DALVACYHYKKLYNRAA"
     gene            complement(570..1505)
                     /locus_tag="VLL95_13300"
     CDS             complement(570..1505)
                     /locus_tag="VLL95_13300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39884.1"
                     /translation="MKKVSIAALLLLLFAAPQRLWAQLDVDALFMDKGDLCTGPMYSY
                     SAWKNYWEGTLKRENLNLGTVSTQTIGLMGMYGIKKNLAVFYNAPYVITNASAGQWKG
                     QQGFQDLSLWLKYKPHTWDMGDGKLSVIGLLGVSTPMSNYSKDMLPFSIGLGSTNLST
                     RLMADYINHNWFVTASATYVWRSNVTLDRTAYYTTSMHYSDEVEMPNATQWNLRMGYR
                     TSKLVAEAVIDNWTTQGGNDITRNNMPFITNRMNATRVGFHFKKEEVLLKPLTVLAGG
                     NYVVAGRNVGQSTTVYAGLAWIFHFAKQKPAADKK"
     gene            complement(1626..1919)
                     /locus_tag="VLL95_13305"
     CDS             complement(1626..1919)
                     /locus_tag="VLL95_13305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39885.1"
                     /translation="MLQTPAFPEYTCGHSTVSSAAAEALTKVFGDNFSYTDSTELEFG
                     IESRSFKSFRHAAEENNLARFYGGIHFHPSCLVSTDYGKQVGELVVTRLKMKK"
     gene            complement(1926..2951)
                     /locus_tag="VLL95_13310"
     CDS             complement(1926..2951)
                     /locus_tag="VLL95_13310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39886.1"
                     /translation="MKKIFAGLLAIVVLAASCKKSTEYKSYLNDPLLFSQTVHELNTV
                     VMGNNFPPIVASRNYTYAAIAAYEVVAAAHPDKYQSLAGQIKDLKAMPQPQGDKVNFP
                     LAALLAFIHVGDAVTFPEGSMQLYRDSILNVARDKGLPEDEEAQSKAFADTVAKTLIA
                     WSKGDNYAKTRGAQKYTVMDVPGRWVPTPPMYADAVEPNWGKIRPLVMDSSSQFVPPA
                     PIPFNMTDSSSEYYQQVKAVKEARENLTKEQEHIAWFWDDNPFKLNVSGHVMFSTKKF
                     SPPGHWMGIVGIAAQKAKSDFAETVYAYAITAIASFDAFIQCWESKYRYETVRPETVI
                     NKYLDAE"
     gene            complement(3058..3612)
                     /locus_tag="VLL95_13315"
     CDS             complement(3058..3612)
                     /locus_tag="VLL95_13315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39887.1"
                     /translation="MRKLTAICVLAILFFNSVGYRVLTHYLQQQADSRTQAMIDAGEF
                     RPSNLIELSVPLDLPYTTTWTGWEHFEGDIEIDGIHYRYVERKLEEGRMYVRCLPNTE
                     KTQVLTARDEFSKLVNSFNKQTDSKKSAPVFVSNYLGDYDDAFDQWSLMAPWLETKVT
                     TLLMHAATQQGHAAIALPPPEMLA"
     gene            3790..>4263
                     /locus_tag="VLL95_13320"
     CDS             3790..>4263
                     /locus_tag="VLL95_13320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39888.1"
                     /translation="MKSSLLKRVGVGASVFLLPVLLKAQMPDSAVKQTHIGGTITLTQ
                     NGISLIPSFSLGKPAVMFDLNVGGKKLTFEPFFRFGLDGKPWSFIFWWRYKAINSQRF
                     RMSVGAHPSYVFRSIAELSNGAATTNIQVSRFVAMDLTPTFVISKSVSAGIYYLYS"
BASE COUNT          942 a         1031 c         1148 g         1142 t
ORIGIN      
        1 gccgccctgt tgtacagttt tttgtaatgg tagcaggcta ccaatgcatc gtatacagcc
       61 gcacttacat aggcataggc acgggcagaa tagggtggat tggcaaaggg aaacagtgga
      121 taggcaaggg gattgttggc atcgggtacc gggtaggaac catccggatt gtttaccggt
      181 ggcaggttgt atttggctac cagttcacgg gtgatttcat tccagcgcag tacagcacca
      241 gcactccaat agttcaactg gtctctgccg cggtcatcaa gccgggcctg aaggctcttg
      301 atttcattga tctgcgcggt atagtcgggg ccggtggggg cggcaggcgc tgttacggcc
      361 acttcatccg gagcggtgag cagcatggtt ttccaggtgc cggcattgat atcggttttg
      421 gcaggattga gtgccgggaa ttcctggctt cggtcgctga tgccttttct gcaggccacc
      481 agcaaggaga gggcgcttac gatgaggaga ggttgtatga ttgatttcat gagtagcagg
      541 attggtgatt tcaaataagt gagctgtaac tattttttat ccgcagcagg cttttgtttg
      601 gcgaaatgga atatccaggc caggccggca tatacggtag tgctctggcc aacgttgcgg
      661 ccggcaacta cgtagttgcc accggccagt acggtcaatg gtttcagcaa gacctcttct
      721 ttcttgaaat gaaaacccac cctcgtggca ttcattcggt tggtgatgaa aggcatgttg
      781 ttgcgggtaa tgtcattccc accttgtgtc gtccagttgt cgatgacagc ttcggccacc
      841 aatttgctgg tgcggtagcc cattcgcagg ttccactgtg tggcattggg catttccacc
      901 tcatcggagt agtgcatgct ggtggtgtaa taggctgtac ggtccagtgt cacattgctg
      961 cgccacacat aggtagcgct ggcagtgaca aaccaattgt gattgatata gtcagccatt
     1021 aggcgggtgc tgaggttggt actgcccagc ccgatgctga agggaagcat gtctttgctg
     1081 taattgctca tcggggtgct cacgcccaac aggccaatga cactgagttt gccatcgccc
     1141 atgtcccagg tatggggttt gtatttcagc caaaggctca ggtcctggaa accctgctgg
     1201 cctttccatt ggccggcact ggcattagtg atgacataag gggcattgta aaacaccgcc
     1261 aggttctttt tgatcccgta catgcccatc agcccgatgg tttgagtact tacggtgcca
     1321 aggttcaggt tctctctttt cagggtgcct tcccaatagt tcttccaggc gctgtagctg
     1381 tacatggggc cggtgcacag gtcacctttg tccatgaaga gggcatctac atctaattgt
     1441 gcccaaagac gctggggggc ggcaaacaac aataataaca atgctgctat gcttactttt
     1501 ttcattgtgg agattctttt ctgatgattg gtgggcacat acgtataccg gcatcagcca
     1561 atcagtatgc atgaattgcc tactgaatag gacaggttaa ccagtgtaaa cttgtgccgc
     1621 ttgggttatt tcttcatttt caaacgggtc accaccaatt ctccaacctg cttaccgtaa
     1681 tcggtgctta caaggcagga aggatggaag tggataccac cataaaaacg ggccaggttg
     1741 ttttcttcgg ccgcatgacg aaatgatttg aagctgcggc tttcaatgcc gaattccagc
     1801 tccgtgctgt ctgtataaga aaaattgtcg ccaaacactt tggtaagcgc ttctgctgct
     1861 gcagatgata ccgtgctgtg accgcaggtg tattccggga aggcaggggt ttgcaacaaa
     1921 ggcctctact cggcgtcgag gtacttgttg atcacggttt cgggccttac ggtttcgtag
     1981 cggtatttgc tttcccagca ttgaatgaac gcgtcgaatg aagcgatggc agtgatggca
     2041 taggcataca cggtttcagc aaaatcggat ttcgcttttt gtgcggctat gcccacgatg
     2101 cccatccagt ggccgggagg ggagaatttc ttcgtgctga acatcacgtg tccgctcaca
     2161 ttcagtttga acgggttgtc atcccagaac caggcaatgt gctcctgttc cttcgtaaga
     2221 ttctcccggg cctctttcac tgcttttacc tgctggtaat attcactgct gctgtcggtc
     2281 atgttgaacg ggataggcgc gggtggtaca aactggctgg agctgtccat caccagcggc
     2341 ctgatctttc cccaattggg ctctacggca tcggcataca tggggggcgt aggcacccag
     2401 cggccgggca catccattac ggtgtacttc tgggcgccgc gggtcttggc gtagttatcg
     2461 cccttgctcc atgcaatcag cgtcttggcc accgtgtctg caaatgcctt gctttgcgct
     2521 tcttcatctt ccggcaaacc cttgtcacga gctacgttca ggatgctgtc gcggtacagt
     2581 tgcatactgc cttccgggaa ggtaactgca tcacctacgt gtatgaaagc cagcaaagcc
     2641 gccagcggaa aattcacttt gtcgccctgc ggttgaggca tggctttcag atcttttatc
     2701 tgcccggcca gcgattggta cttgtccgga tgcgctgctg ccactacttc gtacgcagca
     2761 atggcggcat acgtatagtt gcgggaagcc acaatgggcg ggaagttgtt gcccatcacc
     2821 accgtattca gttcatgaac ggtttggctg aacaacagcg gatcattcaa atatgacttg
     2881 tattcagtac tctttttgca ggaagcagca agtacaacaa tggccaacag gccggcaaat
     2941 atttttttca ttgcaaatca ggctcgaaat aaatgactgg atcaaaacag caatcacggc
     3001 aaacctctgt aaacaggagt ttgcggcaca tgattttcat caagtgatgg cgaataatca
     3061 ggccagcatt tcgggcggag gcaaggcaat ggcagcatga ccctgctggg tggctgcatg
     3121 cataagaagg gtggttactt ttgtttccag ccagggcgcc atcagcgacc actggtcgaa
     3181 tgcatcatcg tagtcgccga ggtagttgct cacaaaaacc ggcgccgatt tcttggaatc
     3241 cgtttgttta ttgaaactgt tgaccagttt gctgaattca tcacgggctg tcagcacctg
     3301 tgttttctcg gtgttgggca ggcagcgcac atacatgcgg ccttcttcca gtttgcgctc
     3361 cacatagcgg tagtggatgc catcaatttc gatgtcaccc tcaaaatgct cccagccagt
     3421 ccaggtagtg gtgtaaggca ggtcgagcgg tacgctcagt tctatcaggt tggaaggacg
     3481 gaattcaccg gcatcaatca tggcctgggt acggctatca gcctgctgtt gcaggtaatg
     3541 cgtcagcact ctgtatccca cgctgttaaa aaacaggatg gccaatacac atatggcagt
     3601 tagtttcctc aaggcacggc aaaatattgt tttttgggca aatctgccga gaccggtaaa
     3661 atttagaaat tgttcaatgc cctgccaaac gggcagaaac tgctacccgt tgcctccctg
     3721 tttgaaattt gtaatccttt gggtgaaaag cgtaaggcag ggtcgaagcc tggctcttgc
     3781 tttgtatgca tgaaatcaag tttgctgaaa cgggtaggcg taggagcttc cgtttttttg
     3841 ttgccagtgc ttttgaaggc gcaaatgccc gacagtgcag tgaagcaaac acatattggt
     3901 ggaacgatca cccttaccca aaatggcatt tcactcattc cttcattttc gcttgggaaa
     3961 ccggctgtta tgtttgattt gaatgtaggc ggcaaaaagt tgacttttga accctttttc
     4021 cgttttggcc tggatggtaa gccctggagt tttattttct ggtggcgcta caaggccatc
     4081 aactcacaac gattccggat gagtgtgggg gcgcaccctt cttatgtatt ccggtctatc
     4141 gccgagcttt ccaatggcgc cgccaccacg aacatccagg taagccggtt tgtagccatg
     4201 gaccttacgc caacattcgt gatttccaaa agcgttagtg ctggcattta ttatttgtac
     4261 tcg
//
LOCUS       DATIQF010000777         4111 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_12384, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000777 DATIQF010000000
VERSION     DATIQF010000777.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4111
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12384"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VLL95_13325"
     CDS             <1..192
                     /locus_tag="VLL95_13325"
                     /inference="COORDINATES: protein motif:HMM:NF018452.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1214 domain-containing protein"
                     /protein_id="HSR39889.1"
                     /translation="PNLKRNADSSITLYIQHESPGKDKEKNWLPAPNGPFFFVNRLYW
                     PKPEAFNGTWKPKPLVRVQ"
     gene            complement(356..1033)
                     /locus_tag="VLL95_13330"
     CDS             complement(356..1033)
                     /locus_tag="VLL95_13330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39890.1"
                     /translation="MKKNLLYSLVILMTLSACGPSTEITRSWTSPNKNSGGYTNLFLA
                     AVIPDMAKRQSFENDVQKNLANIGINSTTSSSTIQPNFWMSTDLDKNAMMRIINEKGN
                     DAIMTMTLIDVQNEQRYIPGTMMMGGPMMAGPGMWGPGWGMAGAGGFGGFWGMHHGMM
                     MTPGQIVNDRKYFVEINVYDVKSELLVWTGQSKTINPSNMERFSREFADVVLKRMQRE
                     NVVQKKG"
     gene            1594..2001
                     /locus_tag="VLL95_13335"
     CDS             1594..2001
                     /locus_tag="VLL95_13335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39891.1"
                     /translation="MKKHLIAAAVTSIVLLVFAYLCLLIMPRLPEAMLEDYFSPAFVN
                     DENRNLFYFVQPVVLAFALSWFWTRFKESFAGNWALKGLELGVVYVLVASLPAMILLF
                     SAINVSAATVGTWLLYSFAQATIAGEISARIDP"
     gene            2100..2981
                     /locus_tag="VLL95_13340"
     CDS             2100..2981
                     /locus_tag="VLL95_13340"
                     /inference="COORDINATES: protein motif:HMM:NF013247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HSR39892.1"
                     /translation="MKQKRMSYINGLLVDADNASIGIEDLALTRGFGVFDFFRVRDGI
                     LIHPEAHIHRLFHSAKQMHLPLHISEQELVALAHQLVQLNCESECGVKLLLTGGYSAN
                     GYLPGNPNLIISTYDLPHQDPKQYETGISLITHEYRKEFPAVKTTNYAMGIWLLPEIF
                     QAKADDVLYCWQDEVHECPRSNVFIVNGQNEVLTPIHGILHGITRRNVLHLSRELFPT
                     HETDITREMLYNASEIFITSTTKRIMPVTKLDGALVGDGRPGPVTQKLIEVFEEDEIK
                     YLQEKQTVRPSHSTTYP"
     gene            complement(2958..3701)
                     /locus_tag="VLL95_13345"
     CDS             complement(2958..3701)
                     /locus_tag="VLL95_13345"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSR39893.1"
                     /translation="MGVKDLFSKHAADYASFRPQYPPELIRHLASLVNYRGVAWDCAA
                     GNGQLAVQLERFFNLVCASDISAAQIKEAPARGGIHYSVQPAESTDYPDHFFDLITVG
                     QAIHWLNRDAFYKEAKRVLRPGGVLALIGYGLCRVNAEIDPWIDHFYHEVVGAYWEPE
                     RKIIDSGYAMLEFPFENIAVPHFGMSAMWSADQFLKYLGTWSACKKYREEVGHDPVGA
                     NENSLRSHWPAGSVLEVNFPLLLRVGRAV"
     gene            complement(3719..>4111)
                     /locus_tag="VLL95_13350"
     CDS             complement(3719..>4111)
                     /locus_tag="VLL95_13350"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HSR39894.1"
                     /translation="LLAFIALATVGFSQPGSKSNEPKEKPKYEMKQYWFVMLTRGKDR
                     DKITDTAVINKLQAGHMANIQAMADMGKLIVAGPFGDDGNWRGIFIFDAASKEEVEKL
                     LQTDPAIKAGRMDYEIHPWWTAKGTVFK"
BASE COUNT         1074 a         1020 c          895 g         1122 t
ORIGIN      
        1 cccaacctga agcgcaatgc agacagcagc attacgctgt atatccagca tgaatcacct
       61 ggcaaggaca aggaaaaaaa ctggctgccc gctcccaatg gtcccttctt tttcgtaaac
      121 aggttgtatt ggcccaaacc cgaagccttc aacggaacct ggaaaccaaa gccattggtt
      181 cgggtgcaat aatgcaaaca aacgaggtcc gttcgaaaca gcgaacatct gcaaccgcat
      241 ccaaacaata aggctggcta aatgccggcc ttattgtttg gatttcaatc tctgtagaaa
      301 acgaaaggga ccggcccaac gacccgatcc cttttgcttt tgtgcaggag caaggttacc
      361 ctttcttctg tactacgttt tctctttgca tccttttcaa tactacatca gcaaattccc
      421 ttgaaaatct ttccatgtta gaaggattga tcgttttgga ttgccctgtc caaaccagga
      481 gttcagactt cacatcatag acattgattt ctacaaagta tttgcggtca ttcacaattt
      541 gtccgggagt catcatcatg ccatggtgca tgccccagaa accaccaaaa ccaccggcac
      601 ctgccatgcc ccaacccggg ccccacatgc ctggtcctgc catcatgggt ccacccatca
      661 tcatggtacc gggaatataa cgctgctcat tctgcacatc aatcaaggtc attgtcatga
      721 tggcatcgtt gcctttttca ttgatgatgc gcatcatggc gttcttgtcc aaatcggtgc
      781 tcatccaaaa atttggctga atggtagaac tgctcgtggt ggaattgatg ccgatgttgg
      841 caaggttctt ttgcacatca ttttcaaaac tctggcgttt tgccatatcc gggataaccg
      901 cagccaaaaa caaattggta taacctccgg aattcttatt cgggctggtc catgaacggg
      961 taatttctgt ggaaggccca caggctgaca aggtcataag gatgaccagg gaataaagca
     1021 ggtttttttt catagtgagg tctgatttgt gtttatggta ttttgatcga tgaaaaagtt
     1081 ggcgtgaaag atacaaccaa aacggtattc tcacacgcat gacctgtatc acaaattgtt
     1141 atgtttaaag gaattttgat agaatgaatg cagaataaat ttcaatagta ggaacaaatg
     1201 gcaaaaaatg ccccataggt gccttagttt cactggcttg tcttgtgacg cctacactat
     1261 ttaggaagat gtttggcttt tgacatttgg gtttgcctgt tacctcctca ggggcattcg
     1321 agtcttttga ctcttttcaa atttttattc acccatttcg ggttcccgat aggaatttga
     1381 ttttttagtc atggagaata catccactta aagctttcat tgacaggatt cggtgctttt
     1441 ttgaacaact gacagaagtc atggattaca aattgcactg acatttagat ttgtacggtc
     1501 attaaacata accctcccaa gcatagagtg catttcaaat atgtttagcg gagcattaga
     1561 atgtcgatca ttaccgaaca ataaaatcaa cccatgaaaa aacatctgat tgcagcagcc
     1621 gtaaccagca ttgtattact ggttttcgcc tatttgtgtt tgcttattat gcccaggctt
     1681 cccgaagcca tgttggaaga ctatttcagc ccggcattcg taaatgacga aaacaggaac
     1741 ttgttctact ttgttcagcc tgtagtactg gcatttgcat taagttggtt ctggacccgt
     1801 tttaaagaat catttgccgg caactgggcg ctgaaagggc tcgagttggg tgtcgtttat
     1861 gtattggttg catcgctacc cgccatgatt ttattgttca gtgccatcaa tgtgtctgcc
     1921 gccactgtag gaacctggtt actgtacagc tttgcgcagg ccactattgc tggagaaatt
     1981 tcagcacgaa ttgatcctta ataacaactt tttggtcgat taataaaccc tcggagcgtt
     2041 tagcagccgc tttgggggtt catttatttt tatcgagggc agacaatgag gaggtaatta
     2101 tgaaacagaa gagaatgtct tacatcaacg gattgctggt ggatgcagac aatgcaagta
     2161 ttggcatcga agacctggca ctcacccggg gattcggcgt cttcgatttc ttccgcgtca
     2221 gggatggcat tctcattcac cctgaagcgc atatccaccg tttgtttcat tctgccaaac
     2281 aaatgcattt gcccttgcac atttctgagc aggaattggt ggcactggcc caccaactgg
     2341 tgcagctgaa ttgtgaatca gaatgcggcg tgaagttact cctcactggc ggctactctg
     2401 ccaacggtta cctccccggc aatcccaatc tcatcatcag cacttacgat ctgccccacc
     2461 aggatccgaa acaatatgaa accgggatca gcctgatcac gcatgaatac aggaaagaat
     2521 ttcctgctgt gaaaaccacc aattatgcga tgggcatttg gctgcttcct gaaattttcc
     2581 aggccaaagc cgatgatgtt ttgtattgct ggcaggatga agtacacgaa tgcccccgca
     2641 gtaatgtttt tattgtaaat ggccagaacg aagtgctgac gcctattcac ggcattctgc
     2701 acggcatcac ccggcgcaat gtactgcacc tgagcaggga actgttccca acgcatgaaa
     2761 cggatattac ccgggaaatg ctctacaatg ccagcgaaat atttattacc agtactacca
     2821 aacgcataat gccggtaacc aaattggacg gcgcgttggt tggtgatggc aggcccggcc
     2881 cggtcaccca aaaactgata gaggtcttcg aggaagatga aataaagtat ttgcaggaaa
     2941 agcaaactgt tcgtccatca cacagcacga cctaccctta gcaacaaagg aaaattcacc
     3001 tctaatacac tccctgcagg ccagtggctg cgcagggagt tttcattggc acccaccgga
     3061 tcatgaccga cctcctcccg gtatttcttg caagcgctcc aggtgcccag gtatttcaaa
     3121 aactggtcgg cactccacat cgcactcatg ccgaagtgag gaacagctat gttttcaaat
     3181 ggaaattcca gcattgcata cccactgtca atgatcttcc tttccggctc ccaataagct
     3241 cctactacct catgatagaa atgatctatc catggatcga tttcagcatt caccctgcaa
     3301 aggccatacc caataagggc aagcactccg cctggtctca atacccgctt tgcctctttg
     3361 taaaaggcat ccctgttgag ccaatggatg gcctgaccca ctgtgatcaa atcaaaaaaa
     3421 tggtcgggat agtcggttga ttctgcaggt tgcacactgt agtggatgcc tcctcttgcc
     3481 ggcgcctcct ttatttgagc tgcactgata tctgaggcac ataccaggtt gaagaaacgc
     3541 tccaactgca ctgccaactg tccatttcct gctgcacaat cccacgccac accacggtaa
     3601 tttaccagtg aggccaaatg cctgatcagt tcaggcgggt actgaggcct gaaactggca
     3661 taatcagcag cgtgtttcga aaacaaatcc ttcactccca tgccggaaag gtatcaactc
     3721 acttgaatac ggtacccttg gctgtccacc agggatgtat ttcatagtcc attcttcctg
     3781 ctttgatggc aggatctgtc tgcagcagtt tttctacctc ctctttgctg gcggcatcaa
     3841 aaatgaaaat accccgccag ttgccatcat cgccaaaagg tccggctaca atcaatttgc
     3901 ccatatcagc catggcctgg atgttggcca tgtggcctgc ctgcaatttg ttgatgactg
     3961 ccgtgtcggt gatcttatca cgatccttgc ccctggtaag cattacaaac cagtattgct
     4021 tcatctcata tttgggcttt tccttgggtt cattgctttt gcttccgggt tggctaaacc
     4081 caactgtcgc taatgcgatg aatgccaaca g
//
LOCUS       DATIQF010000778         2332 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_149445,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000778 DATIQF010000000
VERSION     DATIQF010000778.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2332
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149445"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(94..810)
                     /gene="truB"
                     /locus_tag="VLL95_13355"
     CDS             complement(94..810)
                     /gene="truB"
                     /locus_tag="VLL95_13355"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HSR39895.1"
                     /translation="MTQQELLEGKVLLVNKPLRWTSFDVIGRLRKIFKIKKIGHAGTL
                     DPLATGLLIVCTGKFTKKINEYMGMEKEYTGTITVGATTPTYDLESEPENFKEFQHLT
                     MDAIEAILPQFIGNIQQIPPAHSAIKIDGKRVYELARQGKEVELKARNVTISEFEITR
                     MELPQIDFRVVCSTGTYIRSLANDVGAVLGTGGYLSALCRTRIGPFTLHEANEVEDFE
                     TLFDKTTIAEKPPRHNHQKG"
     gene            complement(887..2224)
                     /locus_tag="VLL95_13360"
     CDS             complement(887..2224)
                     /locus_tag="VLL95_13360"
                     /inference="COORDINATES: protein motif:HMM:NF013998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HSR39896.1"
                     /translation="MTTAFYNQLYFTTRFYIACLGAAGLFVFAWLFHWPLIIPQVFLV
                     AIGFAILADFAYLFLVGYRFTCSRLSALRFSNSDYNAVSLQLWHSYPYPLQLTLIEEL
                     PEQFQARTNQHHIVAASRTRTSVNYSIRPVHRGDYQFGYTICLLRSQLGFLQRRLKGS
                     SPSVVKVYPSFLQLRQHQLLAPTATTHDKGAIKLRKIGQSMEFETIKDYITGDDVRAV
                     NWKATARKANLMVNHYMEERSQQVYCIIDKGRLMKMPFNGLALMDYAINSTLVLASVA
                     LHRQDRFGMLSFSHKEGDHVMADKKPGQLKALQESLYRMSTGFYETDFEKLYLQARKS
                     IKQRSLLIIFTNFESVTGMRRQLPYLRQLSKHHLLLVVFFQNTELAELSDMPAPTLED
                     VYTHTVAGKFVFEKKAIVKELMHHGILALLTKPGDLTIAAVNKYLELKAKQAW"
BASE COUNT          583 a          557 c          551 g          641 t
ORIGIN      
        1 aggcaatgga tggctcgaca catttgaatg gaaaagcacc aaccgccttg gtaccaacaa
       61 acgaagcaat ttagcgattc aatttggcat gggttatccc ttctgatgat tgtgccgtgg
      121 aggcttttca gcaatggtcg ttttgtcaaa cagggtttca aaatcctcca cctcatttgc
      181 ttcatgcaac gtgaagggcc caatgcgtgt tctgcacaag gcgctcaggt aaccaccggt
      241 gcccaacacc gcccccacat catttgccag gcttcgaata taggtgccgg tactgcacac
      301 caccctgaag tctatttgtg gcaattccat tcgggtaatt tcaaattctg aaattgtaac
      361 attccttgcc ttcaactcaa cctccttgcc ctgcctcgcc agttcataca ctctcttccc
      421 atcaattttt atggccgaat gagcaggtgg tatttgttga atattgccta tgaattgcgg
      481 caggatcgct tcaatggcgt ccatggtcaa atgctgaaat tccttaaagt tttcaggttc
      541 actttccagg tcataggtcg gcgtggtagc tcccacagta atggtgcctg tgtattcttt
      601 ttccatgccc atgtattcat tgatcttctt ggtgaacttt cccgtgcata caatgagcag
      661 cccggttgcc aatggatcca gcgtgccggc atgtccgatt tttttgatct taaagatctt
      721 gcgcaatcgc ccgattacgt cgaaagatgt ccaacgcaaa ggcttgttta ccagcaatac
      781 cttgccttcc agtaattcct gttgtgtcac gaaactcaga ttatttgcaa aaatcaaggc
      841 cgcaaaggta gccataacac gccagagcag catgatggat tgtgtattac caggcttgct
      901 tggctttcaa ctccaggtat ttgttcacgg cagcaatagt aagatcccct ggtttcgtta
      961 agagcgctaa tatgccatga tgcatcagtt cttttacaat ggcctttttt tcaaacacga
     1021 atttcccggc cacggtatgc gtgtatacat cttccagggt aggcgcaggc atgtctgaaa
     1081 gctcagccaa ctcggtgttt tgaaaaaaga ctaccaggag caggtgatgt ttggatagct
     1141 ggcgcaaata gggcagttgc ctgcgcatgc ctgtaaccga ttcaaaattg gtgaagatga
     1201 tcagcaggct tcgttgcttg atcgattttc ttgcctgcaa gtacagcttt tcgaaatcag
     1261 tttcgtaaaa gcccgtactc attcggtaaa gggactcttg aagcgctttc agttgcccgg
     1321 gctttttatc tgccatgaca tggtcgcctt ccttatgcga aaaagataac attccaaacc
     1381 tgtcctggcg atgcagggcc acgcttgcca aaaccagcgt actgttgatg gcgtaatcca
     1441 tcagggcgag cccgttgaaa ggcattttca tcaatcggcc cttgtcgata atgcaataaa
     1501 cctgttggct tcgttcttcc atgtagtggt ttaccatcag gttggctttg cgggcagtcg
     1561 ctttccagtt cacggctctt acatcgtcac cggtaatgta gtccttgatg gtttcaaact
     1621 ccatgctttg cccgatcttc ctcaatttga tggccccttt atcgtgggtg gttgccgttg
     1681 gggccaatag ctggtgttgg cgcaactgca aaaaagaggg atatactttt acaactgaag
     1741 ggctgctgcc tttcagcctt cgttgcagaa atcccagttg actgcgaagt aggcaaatgg
     1801 tgtatccgaa ttgataatct ccccggtgga ccggccttat ggagtaattc actgatgtcc
     1861 tggtgcggga agccgccact atatgatgtt gattggtgcg ggcctggaat tgctccggca
     1921 attcctcaat caaagtaagt tggagcggat aggggtagct gtgccacagt tgcagcgata
     1981 ccgcattgta atcactattt gaaaaccgga gtgctgatag cctggaacaa gtgaagcgat
     2041 acccgaccag gaagagatag gcaaagtctg ctaggatggc aaacccaata gcaacaagaa
     2101 atacctgcgg aatgatgaga ggccaatgaa acagccaggc aaaaacaaat aaccctgctg
     2161 caccaagaca tgcgatgtaa aatcgggtgg taaaatagag ctggttgtaa aacgccgtgg
     2221 tcaatgatct tgcatttcag gcaaaataat catttcagcg catcaggatc gtacttgaac
     2281 ctgacaagag cattcttttg ttcattgctc gaaagcctca cggcatatcg tt
//
LOCUS       DATIQF010000779         4003 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_119093,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000779 DATIQF010000000
VERSION     DATIQF010000779.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4003
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119093"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1035
                     /locus_tag="VLL95_13365"
     CDS             <1..1035
                     /locus_tag="VLL95_13365"
                     /inference="COORDINATES: protein motif:HMM:NF027666.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase/phosphatase domain-containing protein"
                     /protein_id="HSR39897.1"
                     /translation="TKVGMTIRWPKGIKAKGELRSQFAHVIDVAPTILEAAGLPEPTM
                     VNGVKQRPMDGISMLYTFNDANAKERHTTQYFEMFGNRAIYQDGWYARTIHKAPWEAN
                     PRRPLSEDIWELYDLKTDFSLTNDLAKQQPEKLKELQALFMKEAEKNFALPIDDRTME
                     RLNGDNVGRPSLMGKRTSLTLAEGMTGMTENVFLNIKNRSKTITADIEIPEGKTANGI
                     LIAQGGRFGGWALYVKNGTLAYDYNFIGIERYTVAASEKLKPGKYTVKLDFAYDGGGP
                     GKGGMATLYINDKKVGEGRVNRTQPGIFSADETADVGIDLATPVVEAIGSERKSRFNG
                     HIPRITVAVK"
     gene            1161..2384
                     /locus_tag="VLL95_13370"
     CDS             1161..2384
                     /locus_tag="VLL95_13370"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HSR39898.1"
                     /translation="MIAPAQTQVADSLCPQRDLSDVIRKARHKPPKAPRESSSSLIAF
                     PIIGSNPATGFMVGLGAQYAFRMPESNHYSMMSGSLQATTKNQYLVIFKNNIYNRKEK
                     IFFTGDWRFQVFSQSTYGLGTNAPIGGILYYQFGLLGLETTIDSLAQPMQYNFLRIHQ
                     TMALRIKKNIYLGAGLQLDGYSKIKDLKLNLTPGEELFTAHYAYSKKYNFDTARYYSS
                     SLHASFVIDKRDNMIQPYTGYFLSVGWRGDLKILGSTKNANMLKVEWRSYHNLSVQKP
                     AHLLAFWFIGEFSPEGQFPYMTLPATAYDQRSRSARGYTQGRFRGNQYAYGEAEYRFP
                     ISKCGGIWSGVAFINATTANNPTQQLGLFQSIKPGYGFGLRILMDKATRTNLALDWGF
                     GHKSSGFYLAVSETF"
     gene            2456..3031
                     /locus_tag="VLL95_13375"
     CDS             2456..3031
                     /locus_tag="VLL95_13375"
                     /inference="COORDINATES: protein motif:HMM:NF024879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper family protein"
                     /protein_id="HSR39899.1"
                     /translation="MKKMISRLRIPGLLMLLATLLFAQLAWAQQPQPAAPATPALPDT
                     SKMSYNQISQQAKLYVYPAKGQNKQQQKSDEFECYKWAVEQSGIDPLNLPKVEAPPPQ
                     SGPTGSAVVGAAKGAAAGAAIGSISGDMGKGAAYGAMAGAIVGRRQGKQAQAQANQQS
                     QQQASAKQKEMEDSFKKAFSVCLESKGYSIK"
     gene            3079..3582
                     /locus_tag="VLL95_13380"
     CDS             3079..3582
                     /locus_tag="VLL95_13380"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSR39900.1"
                     /translation="MKYSILLAALAISMMACQSSKEKQQAENVALVENYIKAVEALNF
                     EAMGNYLADNYMGNGPSYGDTIYKAAAISNWKDNVENLYESIHYNRSKLAPITITEGD
                     NQGDWVINWAELEIKYKNNGGKVIIWAVTSYHVENGKIVKSITVYNEADALRQLGYQI
                     VPAGTQP"
     gene            3616..>4003
                     /locus_tag="VLL95_13385"
     CDS             3616..>4003
                     /locus_tag="VLL95_13385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39901.1"
                     /translation="MKQKLFVSLLIYAAGISLVNAQVFTNKAVGKKSADLRDSLKTAE
                     YPYSLPIWGQKATNAGFDLPYSAGISTQYFWQQSDIVIDNLRVGFNGGPMYDLDGLVR
                     FDKAVATAGAVSVRPDIWLFPFLNVYA"
BASE COUNT         1121 a         1050 c          962 g          870 t
ORIGIN      
        1 accaaagtgg gcatgaccat acgctggccc aagggcatca aagccaaggg agaattgcgt
       61 tcgcaatttg cccatgtaat tgacgtggcg cctaccatcc tggaagcagc cggcctgccg
      121 gaacccacca tggtgaacgg tgtgaagcag cgccccatgg atggtatcag tatgttgtac
      181 actttcaacg atgccaatgc caaagaacgc cataccacgc agtactttga gatgtttggc
      241 aaccgggcca tttaccagga tggctggtat gcccgcacca ttcacaaggc gccctgggaa
      301 gccaaccctc gcaggcctct ttcagaagac atatgggaat tgtatgacct gaaaacggat
      361 ttcagcctta ccaatgatct tgccaagcaa caacctgaaa aactgaagga attgcaggcc
      421 ctattcatga aagaagcaga gaagaatttt gccctgccta ttgatgaccg taccatggaa
      481 cgcttgaatg gcgacaatgt gggccgtccg tcgcttatgg gcaagcgcac ttcccttacc
      541 ctggccgaag gcatgaccgg catgacagaa aatgtattcc tgaacatcaa gaaccgctcc
      601 aaaaccatta ctgccgacat cgaaataccc gagggtaaaa ccgcaaatgg catcctcatt
      661 gcccagggcg gacgctttgg tggctgggcc ctttatgtga aaaacggaac cctggcctat
      721 gactataatt tcataggaat agaacgctat accgttgccg cttctgaaaa actgaagccc
      781 ggtaagtaca ccgttaagct cgactttgcc tatgatggcg ggggccccgg aaaaggcggc
      841 atggctaccc tgtatatcaa cgacaagaaa gtgggcgaag gacgcgtaaa tagaacacag
      901 ccgggaattt tttctgctga tgaaaccgcc gatgtgggca tagacctggc cacgcctgtg
      961 gtggaagcca ttggatctga gcgcaagtcc aggttcaatg gtcatatacc gcggataacg
     1021 gtagcggtaa aataaccgga cagcatacgg gcctgccgcc aggcagaccc gtatctgaac
     1081 cactcaatta agtgatgtat tcgcgtggtc gcacatataa gatgttggcc ttgttgatgg
     1141 ctttaaccgt tggcatggtt atgatcgccc ccgctcaaac gcaggtagca gacagccttt
     1201 gtccgcagcg agacctctcg gatgtgatcc gcaaagcccg gcacaagccg cccaaagcgc
     1261 cacgggaatc atcgagttca ttgatcgctt ttcccattat aggttccaac ccggctaccg
     1321 gtttcatggt ggggctcggc gcccagtatg cctttcgcat gccggaaagc aaccattact
     1381 ccatgatgag tggcagcctg caggccacca ccaaaaacca atacctggtc attttcaaaa
     1441 acaatatcta caaccgcaaa gagaagatct tttttaccgg cgattggcgc ttccaggtat
     1501 tctcgcaatc tacctacggg ttgggtacca acgccccgat tggaggaatc ctctattacc
     1561 agtttgggtt gctgggcctg gaaaccacca tcgattcact ggcccaaccc atgcagtaca
     1621 atttcctccg cattcaccaa accatggccc tcagaatcaa aaagaacata tacctcggtg
     1681 caggactgca attggatggg tactcgaaga tcaaggacct gaaactcaac ctcacacccg
     1741 gcgaagaatt gttcacagcg cactatgcct acagcaagaa atacaatttc gataccgcca
     1801 ggtattattc ttcctctctg catgcatcgt ttgtgattga caaacgggat aacatgatac
     1861 aaccctacac aggctatttt ttgtcagtgg gctggcgggg cgatcttaaa atcctgggat
     1921 ccaccaagaa cgccaatatg ctgaaagtgg aatggcgcag ttatcataac ctgtcggtcc
     1981 agaagcccgc tcacctgctt gccttctggt tcatagggga attttcgccc gaaggacaat
     2041 ttccttacat gacactgccg gctactgctt atgaccagcg cagccgcagc gcccggggct
     2101 atacacaggg tcgcttccgg ggcaatcaat acgcgtatgg cgaagccgaa taccggttcc
     2161 ccatttccaa atgcggcggc atctggagcg gcgtggcctt cattaatgcc actaccgcca
     2221 acaaccccac acaacaattg ggcctgtttc aatcaatcaa acccggctat ggatttgggc
     2281 tgaggatttt gatggataag gccacccgca ccaacctggc cctcgactgg ggctttggtc
     2341 ataaatcaag cggattttac ctggcggtat ccgaaacttt ttagccgcca gtttttgaaa
     2401 acaacaaaac gaaaagaaaa tacaaatgaa ccaacaatta aaaacctcaa gcaaaatgaa
     2461 aaaaatgatt tcccgactcc ggatacccgg tttgctcatg ctgttggcca ccctgctctt
     2521 tgcacagctt gcatgggcgc agcaaccaca gcccgcagcc cctgccacgc ctgcactgcc
     2581 cgatacttcc aaaatgagct ataaccagat ttcgcaacag gcaaagctgt atgtatatcc
     2641 tgccaaggga caaaacaaac agcaacaaaa gagtgatgaa ttcgaatgtt acaaatgggc
     2701 ggtggaacag tctggcatag acccgctgaa cctgccgaag gtggaagcgc cgccaccaca
     2761 atcaggcccc actggttcag ctgttgtagg ggctgccaaa ggtgctgctg ctggcgccgc
     2821 tattggttcc atttcaggcg acatgggtaa aggtgccgcc tacggtgcca tggcaggcgc
     2881 tatagttgga agacggcagg gtaaacaagc ccaggcccag gctaatcagc aatcgcaaca
     2941 acaggccagt gccaaacaaa aggaaatgga ggacagcttc aagaaggcct tcagcgtatg
     3001 cctggaaagc aaaggataca gcataaaata gcattccgtt gagtacaaat accttttaaa
     3061 aaacacaaca cgataaatat gaaatattct attctgctgg cagccttagc tatttcaatg
     3121 atggcttgcc aatccagcaa agaaaaacag caggctgaaa atgtggcatt ggtagagaac
     3181 tatatcaaag cggtggaagc tctgaatttt gaagcgatgg gcaactacct ggccgacaat
     3241 tacatgggca atggtccttc gtatggcgac accatttaca aggcggcagc tatttccaat
     3301 tggaaggaca atgttgaaaa cctctacgaa agcatccatt acaatcgctc aaaactggca
     3361 ccaataacca ttacggaagg cgataaccag ggcgattggg tcattaactg ggccgaactg
     3421 gaaatcaaat acaaaaacaa cggaggcaag gtgataatct gggcggtcac cagttatcat
     3481 gttgaaaacg gcaagattgt gaaatccatt acggtttaca atgaggcaga tgctttaagg
     3541 caattgggct accagatagt gcccgcagga actcagccat aacgatttac tccaaaacct
     3601 ttgaagaagc gcatcatgaa acagaaatta tttgtatcgc tacttatcta tgcagctggc
     3661 atatcattgg tcaatgccca ggtattcacc aacaaagcag tcggcaaaaa atcggcagat
     3721 ctcagggaca gcctcaaaac ggccgaatat ccctattcat tacccatctg gggccaaaag
     3781 gccaccaatg ccgggtttga cctgccgtac tcagccggca ttagcaccca atacttttgg
     3841 cagcaatccg atattgttat cgacaacctg cgggttggct tcaacggagg ccccatgtat
     3901 gatttggatg gcctcgttcg gtttgacaaa gctgttgcca ctgccggggc tgtttccgtg
     3961 cggccagaca tttggctttt ccccttcctc aatgtttatg cca
//
LOCUS       DATIQF010000780        16694 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_103291,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000780 DATIQF010000000
VERSION     DATIQF010000780.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 16694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16694
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103291"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2927)
                     /locus_tag="VLL95_13390"
     CDS             complement(<1..2927)
                     /locus_tag="VLL95_13390"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HSR39902.1"
                     /translation="MWFYRFKNKSIVVFIAVVGMAGYGCKKTPAMFEQLSASNTGIRF
                     ENKLLKKDLLNILYYLYYYNGGGVAAGDINNDGLTDLYFTGNNVAANKLYLNKGNFEF
                     EDITEKAGVAGTAEWCTGATMADVNGDGLLDIYVCAVSKQFGLEGRNMLFINKGNNTF
                     QDEAITYGLNFAGLSTQAAFFDYDHDGDLDCYLLNHSKKPHSNVVDTINRRKVDEYAG
                     DRLYRNNLSEGQSAFTDVSAQAGIYQSSLGYGLGLAVADFNNDGWEDIYVGNDFHEND
                     YYYLNNRNGTFSESSAAHFGHYSRFSMGNDAADFDNDGQIDVVTVDMLPPDEKTLKTY
                     GSDENPNMYKAKLTMNGYQDQFSRNCLQRNNGNGVSFSDVALLAGVSSTDWSWSPLFA
                     DFDNDGNKDLFISSGIVKRPVDMDYVLFVSAMQQNKGLEQTDKYDEETIAKMPDGSSH
                     PFFFKGQGNLQFSEVSKDWGTAKMKGYFNGASYADLNNDGKLDVVINCIDAPAVILRN
                     NNTAANQLTISFKGEAGNKFGVGAKAYVFSGGKMQYQQLMPTRGFMSAGENRLYFGLG
                     NAAKADSVLLVWPDQRFQVLKNIPAGKPLIAAQQQDLDSFQYEQYFPAAKPSWQDVTA
                     STGISWKHNEDPFVDFNRQYLIPHMQSTRGPKLAVADVNKDGLEDFYVCGAAGQAGAL
                     MMQTAGGAFANKTSPAFIQNTGAEEVDATFFDANGDGAPDLYVVSGGNEFDDGHQALA
                     DHLYLNDGRGNFIESTDALPVPKTNKSAVAAADVDADGDTDVFVGGLSNAAKYGYPQD
                     AYLLLNDGKGKFALAPENIINLKQLGVVTAAAFADVNGDGKPDLLAAGEWMPLIVFTN
                     QGGKFVRNDVPGSTGLWQSLLVTDFNSDGKPYVLAGNWGLNNKLVSRKNGPVKMYVKD
                     FDKNGSTEQIVCYTIDGKEYTFLAKDELERPLPVLKKAYLTYSEVAGETVQFMFYDLF
                     KDY"
     gene            complement(3026..3886)
                     /locus_tag="VLL95_13395"
     CDS             complement(3026..3886)
                     /locus_tag="VLL95_13395"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG domain-containing protein"
                     /protein_id="HSR39903.1"
                     /translation="MKRNIWHKLLPGAGILAAVALLSACQKMDQPALGDYPKDANPPG
                     GPLKFYVAFDGTTANPLMNAVDSIKASFASDNPFTTVDGVSGKALQGVNKKYIKYAKP
                     NDWASKAESFSISFWYKKDGQTKNNTGGNGPEHVMSFKANNGHWSGSSMLLFLEGNNS
                     ACAVKVMIADKKVADNWFTWEGGNTIAGLLDNKWHHLVLTYNAANSTMTLFVDGLANP
                     NTRSWGTHGPIGFDEGAISEMRVGAGPSNGFDSDDWLAGSFKGSLDQIRMYTSVLSTS
                     EISALYTGKK"
     gene            complement(3953..5497)
                     /locus_tag="VLL95_13400"
     CDS             complement(3953..5497)
                     /locus_tag="VLL95_13400"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSR39904.1"
                     /translation="MKKSILKWSSAALVLAIALTIAGCQKFLDRKPLTATLDDLNQGG
                     LEGQIYGLYGAIRNGDVAGQAFGGIPWLAINNFRSDDSEKGSSQADGADWGVIYDQFQ
                     YVKDHWSNTIYWDQHYVLIGLANTALQIADSLQLNDPASAINRGEARFFRAFAYFDLV
                     RVFGEVPKIDFRIYKLSDGQKPKASVAEIYALIDSDLQFAIANLPLNWKNPSGANKFP
                     GRLTKGAAYALAAKTKLYRKNWSGALSDCQAVISTGEYALTSNFGSIWTNAGENNPES
                     VYEIQASIGQNGADNFFSWHAIAQGVRGSGDWDLGWGWNTPTDKLVTDWTAFGGGQDT
                     DPRMKATILYSGQPDGSFGRQVPDFPTIPRKYWNKKVYPEPNMQTFTGERQGGWINQR
                     MIRYSDVLLMAAEAANEVGGAANNKLAEDYLEMVRARARGGNNAILPKVAWSSQAQMR
                     TAIQNERRFELAMEGDRFFDLVRWGLGESVLGSLGYTNKHRFYPIPQQAIDNSGGKLV
                     QNPEWN"
     gene            complement(5510..8794)
                     /locus_tag="VLL95_13405"
     CDS             complement(5510..8794)
                     /locus_tag="VLL95_13405"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR39905.1"
                     /translation="MKMMIVLMLFAGLHTYADGFSQKRISIRLESTEMKQALQQIEKK
                     SQYRFLYNQEVLKNTGKVSLNANNELLVNVLNQLFEGTGISYKLLESELIVLSTNEIE
                     EPAPQTIRGKVTDADGKPVAGASVLIKGTKTGTAADAEGNFSISVDDKDILVISAVGF
                     VTQEIAVLGRSNYNITMMASTTAGLNEVVVIGYGTAQKRDLTGSIVKIAGKEVADKPN
                     PNPVSSLQGRVAGLSVVNSGTPGAEPDIRIRGTSSINGVKPLYVVDGIFQDNINYVNP
                     NDIESIEILKDPSSLAIFGVRGANGVIAITTKKGKGGALTVNFNTNMGFKKLTRKIDM
                     VNAQEFKELFDEEQKNIGVPPNLMFDYTPWTGNTNWVDEMTRTAVFSNSNLSVNSSTE
                     KNRFYMGLGYTLDQGVIKYQELQRMMLALSDELKVSKGIKLGFTFNYSRDRAPFSQAN
                     GLLFDARRVLPITPVKDPSGQYFTELAIQAAQIGNPMMNLENKWDKEITYENRYVGSV
                     YADITFLKHFNWRSTFFADQSNVDQRTYNPIIYTWNPALGQGGTVYVDRNNRQTSVNQ
                     NNQRWNKYQQDHILTYKNSFGDHNLTALAGFTTYYGDYRGLFASVRQNANGDPIPNDP
                     RFWYIDNGFGDASTKRSGSSQWERATVSTLIRALYNFRNKYYLNASFRRDGSSQISPE
                     NRYKNFYSVGAGWEVTREDFMANQKIFDFLKIKGSYGVLGSQNVPGDNPYPFFPGLIT
                     GNTAVFGSILAPAYSQAYLPNRNLTWESISAWEAGFEANMFRNRLHVEAAYYYKETSD
                     ILSFQAIPGSSQPALNNVAKMQNKGFELTASWTQQFSKDLTLVVGGNLTTFNNKVLEA
                     ETLRASEERPNQTEKGYPIGYFYGYVVEGLYQSYADKLASPVVVGYDYGPGDFKYKDI
                     NNDNRIDATDRTMIGNPTPDLIYGLNARLTYKRLDFSIDFNGVYGNEIYRYWGSSELP
                     FTTFNYPQFKMNRWRGEGTSNWDPILGANRAINRLPSTYGIEDGSYIRLRNVQLGYNF
                     ALKAQNKMKVQSLRLFANAQDLFTWQNNSGYTPEFGGSATSFGIDNGNNPLPMVVTFG
                     LNVNFQ"
     gene            complement(9020..10147)
                     /locus_tag="VLL95_13410"
     CDS             complement(9020..10147)
                     /locus_tag="VLL95_13410"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR family protein"
                     /protein_id="HSR39906.1"
                     /translation="MENRVWLLFGKKLTGEATNAEISELNDLLTSVPTMQQDLNTVEA
                     IWKGDQTSRDQISDTDYDRLVSRMLRSGLDISGAHTAPVASTKRPSVRKQLWYWAAAA
                     AVLVLSIALWPAKSNTEEKPAVSMLPKSPEANQVSTRSGSRSKIQLPDGTQVWLNADS
                     RLTYGNDFGAKTRDVTLSGEAYFDVVPNKAVTFFIHTSKMTIKVTGTAFNVRAYPNED
                     LSETSLVHGKVEVTLNGQPDKTYYLQPSEKLVIAGASVKQNNPLLNASPKSTAKIPPM
                     AVAHISKMVLDDEMQLPVETAWVNNRLVFVDESCRDVANKMERWYGVTVQFAETALED
                     IHFTGRFENETIQEALEAMQLTAKFGFQVNGNTITITKTSK"
     gene            complement(10227..10865)
                     /locus_tag="VLL95_13415"
     CDS             complement(10227..10865)
                     /locus_tag="VLL95_13415"
                     /inference="COORDINATES: protein motif:HMM:TIGR02985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-70 factor"
                     /protein_id="HSR39907.1"
                     /translation="MYLTVSSLQRLPTMYEDLHISELQHRIAAFEDALAFKELFRRFQ
                     PGLKKFAFSISHSTEEAEEAVDDVFMRVWMKRKTLDHIHNLKLYLYIATRNFSINQLK
                     SHRQFQPLQIEQLRTEIEAISADPQQLMMSRELENRLLEAVNSLPPQCKTIFKLVKED
                     GLKQKEVAELLHLQPKTVENQIAIALKKIAMVLSDYQQEHMIDIAPGRPKKA"
     gene            11104..11180
                     /locus_tag="VLL95_13420"
     tRNA            11104..11180
                     /locus_tag="VLL95_13420"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11138..11140,aa:Ile,seq:cat)
     gene            11266..12018
                     /locus_tag="VLL95_13425"
     CDS             11266..12018
                     /locus_tag="VLL95_13425"
                     /inference="COORDINATES: protein motif:HMM:NF024957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HSR39908.1"
                     /translation="MRQLTALFLLLVCATAFGQQKDSAQVSKKELYSKKFDFKNRAND
                     HFMLQFGYDGWVSKPDSINVTGFSRHFNAYVFIDKPFKTDPRWSAAIGAGVGSSNIFF
                     DKMSVRLAANNQQQQVVFKDLADTNHFRKFKLTNVWLEAPIELRFAANPLNTNKSFKV
                     ALGAKVGLMVSGYTKGRDFRNSDGQSIYSNKYILKEKDRSFFNSTRLAATFRVAYGIF
                     GIHGAYQILNLFRESSGPPVRPWSIGITISGL"
     gene            12101..13285
                     /gene="hflX"
                     /locus_tag="VLL95_13430"
     CDS             12101..13285
                     /gene="hflX"
                     /locus_tag="VLL95_13430"
                     /inference="COORDINATES: protein motif:HMM:TIGR03156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HSR39909.1"
                     /translation="MIEKKQIKEQEKAILVGLVHQNQTEAQTKEFLDELAFLAETAGA
                     ESIKRFWQKLPHPDKATFVGKGKLEEIGTYAKLKGADLLIFDDELSGSQISNIEKATG
                     IKTIDRSDLILDIFARRAKTAQARAQVELAQYQYLLPRLRGMWKHLERQGGGIGTRGP
                     GETEIETDRRIVRDKISLLKNKLKDYDKQAFTQRKERGEFIRVALVGYTNVGKSTIMN
                     LLSKSDVFAENKLFATLDTTTRKVVFENTPFLLSDTVGFIRKLPHHLVESFKSTLDEV
                     READVLLHVVDIGHPQYEDQYAVVNKTLQELGAHDKPVITIFNKLDLYEQHTFDKWLD
                     EEVKQQLLRDLEARWQRETHYNAVFISATEKRNIEGLRKTILDKVRQHYAVRYPYKTN
                     FY"
     gene            complement(13282..14484)
                     /locus_tag="VLL95_13435"
     CDS             complement(13282..14484)
                     /locus_tag="VLL95_13435"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSR39910.1"
                     /translation="MHTASIKPILRKLIRTGVGKFRFLMGTVGLGVAVLFILLAVQTF
                     MNFNELLHGKRNENETADFLVINKEVTAATQTKKELSAFTAAEIDSLKAQAFVEKLGI
                     LTSSNFNVNVSSYSSAIPFYTDAYFESVPDEFIDVTSSDWKWTAGQRDLPVIIPTFFI
                     DLYNTGMAMSQQNFPQLSLDALKAIPLKVMLRGNGREVEMVGHIVATSDRLNSILIPQ
                     SFMDYANAQLGYSDKKVTTRIVIKTNDPSDPRLVKYLADRGWRTNTDKTRFSKVRVIV
                     NWIVGIVGGIGLVMLLFGMLVFSLFIQLTIASSKNDIELLTTLGASPRNLQAFLMQQF
                     MPVNGLVMAAVIAGLSAVQWVLHQLLMGQQMYISPFISWVTLLAMLLVLALIWLTNRS
                     TVRRYLRA"
     gene            complement(14494..15144)
                     /locus_tag="VLL95_13440"
     CDS             complement(14494..15144)
                     /locus_tag="VLL95_13440"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSR39911.1"
                     /translation="MIISLHKVVPAPIREKVLSRESDIWNRELSLQPGEWIKVKAPSG
                     TGKTTLMHVIWNLRKDFEGRVDYDGQPVNTLDAETLALYRQTRMSIIFQDLRLFGQLT
                     ALENIELKLKMPRQPLYGLDKVKAMAEQLGVSHVLQQQTSTCSYGEQQRIAIIRALVQ
                     PFEWLLMDEPFSHLDRANAQKAAQLINEECRSRGAGLLITDLDDDELFPYHKHLNL"
     gene            complement(15258..>16694)
                     /locus_tag="VLL95_13445"
     CDS             complement(15258..>16694)
                     /locus_tag="VLL95_13445"
                     /inference="COORDINATES: protein motif:HMM:NF027446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4836 family protein"
                     /protein_id="HSR39912.1"
                     /translation="LVAVPALDVTAGSVSFQLVAGLKDPSKLEAFIAKQKDAPKIEKE
                     GSLSMVDMNGVVLGWTKEAVMLVGAQSTPSYDLLNDSSDAPIGAIPGAEGEKALLKKY
                     FDLKKDESVLSLDEFGQLMEEPADVAVFTNSESMTGTQVSPLMATMQSKLKDLLQGMY
                     STTKINFEQGKIVVESNSFIGTKMGDLLKKFAGPVVDMSLVERYPSANMNGVAAFSFK
                     PELIPAFLQETGFDALAGIAMAEAGVTVDDVIKAFKGDFAIMFSDFSIQHVDQGKDAA
                     FKAHTPFAKVLMAVRIGDKAAFEKLLNTAASKNLIRREGNRIYPGGEELNAAVGNSVF
                     VGIENDLLVVASDSAIYAGYAAAKSGGALKPAAASAIKGKSLGFYVDASSILQGISND
                     VFDSTDVHMKNILDRSRGTFKEMWFNTSNFDGKKISSYGELVLADQKNALPQLVRFLM
                     YAADEVKLQEKMEEDMYERMEGRPSIHD"
BASE COUNT         3980 a         4335 c         4014 g         4365 t
ORIGIN      
        1 taatagtctt tgaaaaggtc atagaacatg aactgcaccg tttctccggc cacttcactg
       61 taggtgagat atgctttttt cagcactggc aatgggcgct ccaattcatc tttcgccagg
      121 aaggtatact ccttcccgtc aatggtatag cagactattt gctcagtgga tccgtttttg
      181 tcaaagtctt tcacgtacat ttttaccggg ccgttcttcc gggaaaccag tttgttattc
      241 agtccccaat tgccggccag tacgtagggc tttccgtcac tgttgaaatc tgttaccagc
      301 agcgattgcc acaaaccagt actgccgggt acatcattgc gtacaaactt tccgccttgg
      361 ttggtgaata cgatcaatgg catccattca cctgcagcga gcaaatcggg tttgccatca
      421 ccgtttacat cggcaaatgc tgcagccgtt actacaccca gttgtttgag gttgatgata
      481 ttctccggtg ccaatgcaaa ctttcctttg ccatcattca gcaacaggta ggcatcctgc
      541 ggatagccat atttcgcggc attgctcaat ccccccacaa atacatcggt atcgccatcc
      601 gcgtccacat ctgcagcggc tacagccgac ttgttggttt tgggcacagg caatgcatcg
      661 gttgattcaa taaagttgcc acggccatca ttcaggtaca aatgatcggc cagcgcttgg
      721 tgaccatcgt caaactcgtt gccgccgctc accacataca aatcaggtgc accatcgcca
      781 ttggcatcaa agaaagtggc atccacttct tcagcccctg tattttgtat aaatgccgga
      841 gatgttttat tggcaaaggc cccgccggca gtttgcatca tcaatgcgcc ggcctggcct
      901 gcagcgccac acacataaaa atcttcgagg ccatccttgt tcacatcggc caccgcgagt
      961 ttgggtccgc gggttgattg catatgcggg atcaggtact gccggttgaa atcaacaaaa
     1021 ggatcttcgt tgtgcttcca actgatgcct gtggatgccg tcacatcctg ccaggaaggt
     1081 tttgcggcag gaaaatattg ttcatattgg aatgaatcga ggtcctgctg ctgcgctgcg
     1141 atcaaaggct ttccagccgg gatattcttc agtacctgga agcgctgatc gggccaaacc
     1201 agcagcacac tatccgcctt tgctgcgttg cccaggccaa agtacaaccg gttttcaccg
     1261 gccgacatga agcccctcgt tggcatcagc tgctggtact gcattttgcc accggagaaa
     1321 acataggcct tggcacccac gccaaacttg ttgcccgctt cgcctttgaa agatatggtg
     1381 agttgattgg cagcggtgtt gttgttcctg agtatgacag cgggtgcatc aatacaattg
     1441 atcaccacat ccagtttgcc gtcattgttc aggtcggcat aagaggcgcc attaaagtag
     1501 cccttcattt tggctgtgcc ccaatccttg ctcacctcgc tgaactgcag gttgccctgc
     1561 cctttgaaga agaaaggatg cgaactgcca tcaggcattt tggcgatggt ttcctcatcg
     1621 tacttgtcgg tttgctcaag gcccttgttc tgctgcatgg cactcacaaa caacacgtag
     1681 tccatatcca ccggccgctt cacaatgccg cttgaaatga acaggtcttt gttgccatca
     1741 ttgtcaaaat cggcgaacaa aggcgaccag ctccaatctg tggacgatac acctgccagc
     1801 aaggccacat cgctgaagct gactccattc ccattattgc gctgcaggca gtttctcgaa
     1861 aactggtcct ggtagccatt catggtaagc ttggccttgt acatgttggg gttttcgtcg
     1921 ctgccgtagg ttttcaaagt tttttcatcc gggggcagca tgtccaccgt caccacatct
     1981 atctggccgt cattgtcaaa gtcggccgca tcattgccca tgctgaagcg gctgtaatgg
     2041 ccaaagtgag cagcgctgct ttcactgaaa gtgccattcc ggttattgag ataatagtaa
     2101 tcgttttcgt ggaaatcgtt ccctacgtaa atatcttccc atccgtcatt gttgaaatcg
     2161 gccactgcca ggcccaggcc atacccgagg ctgctttgat agatgcctgc ttgtgcactt
     2221 acatctgtaa aagcagattg tccttcgctc aggttgttgc ggtaaagcct gtcgcctgca
     2281 tattcatcca ccttgcggcg gttgatggtg tccaccacat tggaatgcgg ctttttggaa
     2341 tggttgagca ggtagcagtc aaggtctcca tcgtgatcgt aatcgaaaaa agcagcctgc
     2401 gtggacaagc cggcaaaatt caacccatag gtgatggctt catcctggaa agtattgttg
     2461 cccttgttga taaacaacat attcctgcct tcaaggccaa attgtttact gacagcacac
     2521 acataaatgt cgagcaggcc gtcaccgtta acgtcggcca tagtagcgcc ggtacaccat
     2581 tctgcggtgc cggccacacc cgccttttca gtaatgtctt caaactcaaa attgcctttg
     2641 ttgaggtaca gtttgttggc agcaacattg ttgccggtaa agtacagatc agtgaggccg
     2701 tcgttgttaa tatcccccgc cgctacaccg ccaccattgt agtaatacaa gtaatagagt
     2761 atgttgagca gatccttttt cagcagcttg ttttcaaacc ggatgccagt gtttgatgct
     2821 gatagctgct caaacatggc gggtgtcttt ttacaaccgt atcctgccat tccaacaacg
     2881 gcaataaaaa caacgatgct cttattcttg aatcgataga accacatgcc tggcagaaat
     2941 tgtaaactga acaaagaata aaaagggctg tacattgctg tatcagccct ttgaccaaaa
     3001 ctaactgctt atgaaaatgc ttatgttatt ttttgccggt gtacagtgct gatatctcag
     3061 aagttgaaag cacactggta tacatcctga tctgatccag tgaacctttg aacgatcccg
     3121 ccagccagtc atccgaatcg aacccattgg aagggccggc gcctacacgc atctccgata
     3181 tagcgccctc atcaaaacca attggtccgt gtgttcccca cgaacgggtg ttgggatttg
     3241 caaggccatc tacaaatagc gtcatggtgc tattggcagc attgtaggtg agcaccaaat
     3301 gatgccattt gttatccagc aacccggcga tggtgttacc gccttcccac gtaaaccaat
     3361 tgtcagccac ttttttatca gcaatcatca ccttaacggc gcaagcgctg ttgttgcctt
     3421 ccaggaaaag caacatgctg ctgccagacc agtgaccatt gtttgccttg aaactcatga
     3481 catgttcagg tccattgccg ccggtattgt tcttggtctg accatccttc ttgtaccaga
     3541 aagaaatgga gaaactttct gctttactgg cccagtcgtt gggcttggca tatttaatat
     3601 acttcttgtt tacgccttgc agcgctttgc ccgatacccc atctacggta gtaaatggat
     3661 tatctgatgc aaagctggct ttaatactat ccactgcatt catcaggggg ttggctgtgg
     3721 tgccatcaaa cgctacgtag aacttgagcg gaccaccggg agggttggca tctttgggat
     3781 aatcacccaa ggccggttga tccattttct ggcaggccga cagcaaagcc acggcagcca
     3841 atatgcctgc tcccggcagc agtttgtgcc aaatatttct tttcatgatc atgctgattt
     3901 tgttttgttc atttgaaatt tcagaatcac tgaaagccat cacgtaaccg gcttagttcc
     3961 attcgggatt ttgtaccagt ttgccgccgg aattgtcgat agcctgctgc gggatgggat
     4021 agaagcgatg cttattcgta tacccaagtg agccaagtac ggattcaccc aatccccaac
     4081 ggacaaggtc gaagaaacga tcgccttcca tagccaattc aaacctgcgt tcattctgga
     4141 tggccgtccg catttgcgcc tggctgctcc aggccacttt gggtaaaatg gcattgttgc
     4201 caccccgcgc cctggctctt accatttcaa ggtaatcttc tgccagtttg ttgttggctg
     4261 cgccacccac ttcgttggct gcttcagccg ccatcagcaa tacatcggag tagcggatca
     4321 tgcgctggtt gatccagcct ccctggcgtt cgccggtgaa ggtttgcatg tttggttccg
     4381 ggtatacttt cttgttccag tacttgcggg gaatggttgg gaagtcgggt acctggcgcc
     4441 cgaaggaacc atccggctga ccactgtaca aaatggttgc tttcatgcgg ggatcagtat
     4501 cctggccacc accaaaagca gtccagtcgg taaccaactt atcagttgga gtattccaac
     4561 cccatcctaa atcccaatcg ccgctgccac gcaccccttg tgcaatggca tgccagctaa
     4621 agaaattgtc ggcgccattc tgcccgatgc ttgcctggat ctcgtatact gattctggat
     4681 tgttctcccc ggcattggtc cagatgctgc cgaagttgga cgtgagggca tattcgccgg
     4741 tgctgatcac agcctggcag tcggacaaag cccccgacca gtttttgcga tacaacttgg
     4801 ttttggctgc caatgcatac gccgcaccct tggtcaaacg tccggggaac ttgttggcac
     4861 ccgatgggtt cttccagtta aggggcaggt tggcaatagc gaactgcaaa tcagaatcga
     4921 tcaaggcgta gatctcagct acgctggcct ttggcttctg gccatcagac agtttgtaaa
     4981 tgcggaaatc aatcttcggt acttcgccaa aaaccctcac caagtcgaaa taggcaaagg
     5041 cacggaagaa acgggcctca cccctgttga tggcggatgc aggatcattc aactgcaatg
     5101 agtcggcgat ctgcaatgcc gtgttggcca aaccaatcaa tacatagtgc tggtcccaat
     5161 agatggtatt gctccagtgg tctttcacat actggaactg atcatagatc acgccccagt
     5221 cggcaccatc ggcctggctg ctgccttttt cactgtcatc actacggaaa ttgttgatag
     5281 ccagccatgg aataccgcca aaagcctggc ctgccacgtc accattacgg atggcaccat
     5341 acaagccata tatctgacct tccaggccac cctggttcag gtcatccaat gtggcggtga
     5401 gaggcttgcg gtccaaaaac ttttggcatc cggcaatagt caaagctatc gccagcacca
     5461 gtgccgcact gctccatttt aaaattgact ttttcatacg cactatagtt tattggaagt
     5521 ttacgtttaa tccgaaggtc acgaccatcg gcagtggatt gttgccattg tctataccaa
     5581 atgaagtggc ggaaccacca aattcagggg tgtaacctga gttgttctgc caggtgaaca
     5641 ggtcctgcgc attggcaaac aacctgaggc tctgcacttt cattttgttc tgtgctttca
     5701 aggcaaagtt gtaaccgagc tgcacattac gaagccggat gtaactgccg tcttcaatac
     5761 catatgtgct gggcaggcgg ttgatggcac ggttggcccc caaaatggga tcccagttgg
     5821 aagtgccttc cccacgccag cggttcattt tgaactgcgg atagttgaaa gtggtaaacg
     5881 gcaattcgga actgccccag tagcgataaa tttcattgcc atacaccccg ttaaagtcaa
     5941 tcgagaagtc caaacgctta taggtgagtc gggcattcaa tccgtaaata agatcggggg
     6001 tggggttgcc aatcattgta cgatcggtgg cgtcaattct gttatcgttg ttgatatcct
     6061 tgtatttaaa atcaccaggg ccataatcat aacccaccac tacgggagaa gccagtttgt
     6121 cggcatagct ctggtacaat ccttccacaa cataaccata gaaatatcca atggggtatc
     6181 ccttttcggt ttggttgggt ctttcttcgc tggcacgcaa tgtttcagct tccagcacct
     6241 tgttgttgaa ggtggtgagg ttgcctccta ccacaagggt gaggtctttg ctgaattgtt
     6301 gtgtccaact ggccgtgagt tcaaagccct tgttctgcat tttggctacg ttgttaagtg
     6361 ctggttgcga tgaacccggg atagcctgaa aagacaaaat gtctgaggtt tccttgtagt
     6421 aatacgcggc ttcaacatgc aacctgtttc tgaacatatt ggcttcaaaa cctgcttccc
     6481 atgcgctgat agattcccag gtcaggttgc ggttgggaag atatgcctga gaataagccg
     6541 gagccaggat agaaccaaat acagccgtgt tgccggttat caaaccaggg aagaacgggt
     6601 atggattgtc gcccggcacg ttttggcttc ccagcacacc gtacgaacct ttgatcttga
     6661 ggaagtcaaa gattttctgg ttggccatga agtcttcacg tgttacttcc cagccggcac
     6721 ctacagagta gaagttctta tacctgtttt cgggagatat ctgtgacgaa ccgtctctcc
     6781 tgaatgaggc gttcaggtaa tacttgttcc tgaagttgta caaggcacga ataagggtag
     6841 aaaccgttgc acgctcccac tggctgctgc cggaacgctt ggtagaggca tcgccaaaac
     6901 cattgtcgat gtaccagaag cggggatcgt tgggaatggg atcgccattc gcattttgac
     6961 ggaccgaagc aaacaagccc ctgtaatcgc cgtagtaggt agtgaaaccg gccagagctg
     7021 tcaggttgtg atcgccaaaa ctgttcttgt aggtaagaat atgatcctgc tgatacttgt
     7081 tccagcgctg gttgttttgg tttaccgaag tctggcggtt gttgcggtcc acgtacactg
     7141 tgccaccttg tcccaaagca ggattccagg tgtaaatgat ggggttgtaa gtccgctgat
     7201 caacattgct ttggtcggca aaaaatgtac tgcgccagtt gaagtgcttg aggaaagtaa
     7261 tgtcggcata cacgctgccc acgtaacggt tttcgtaggt aatttctttg tcccatttgt
     7321 tttcaaggtt catcatgggg ttacctatct gcgccgcctg gatggccaat tcggtgaagt
     7381 actggccgga aggatctttc actggtgtaa tgggcaatac cctgcgggca tcaaacaaca
     7441 aaccattggc ctggctgaaa ggagccctgt cgcggctgta gttgaaggtg aaaccaagtt
     7501 tgatgccttt gctcactttg agttcatcac tcaaggccag catcatgcgc tgcagttcct
     7561 ggtacttgat cacgccctgg tcaagggtgt agccaaggcc catgtaaaag cggtttttct
     7621 cggtactgga gtttacgctg aggttgctgt tgctgaatac cgccgtcctt gtcatttcat
     7681 ctacccaatt ggtatttccg gtccaagggg tataatcaaa catcaggttg ggaggtacgc
     7741 caatattctt ctgctcttca tcaaagagtt ctttgaactc ctgcgcattc accatgtcaa
     7801 ttttccgggt cagctttttg aaacccatat tggtattgaa gttgacggtg agtgcaccgc
     7861 ccttgccttt tttggtggta atggcaataa caccgttggc gccacgcacc ccgaagatgg
     7921 cgagtgaaga ggggtctttc agtatttcga tggactcaat atcgttgggg ttcacgtagt
     7981 tgatattgtc ttggaagata ccatctacta catacaaagg ctttaccccg ttgatgctgc
     8041 tggtaccgcg aatacggata tcgggttctg ccccgggtgt accgctgttt actacgctca
     8101 agccagctac cctgccttgc agagatgata ccgggttggg gttgggcttg tccgccactt
     8161 ccttaccggc aattttcacg atggaaccgg tcaggtcacg cttttgagcg gtaccataac
     8221 caatcactac cacttcgttc aggccggcgg tggttgaagc catcatggtg atattgtagt
     8281 tgctgcgacc gagaacggca atttcctggg tcacaaaacc aacggcagaa ataacaagaa
     8341 tgtctttgtc gtctactgaa atggagaagt tgccttcggc atcagcagcg gtacctgttt
     8401 tggtgccctt gatcaatacc gaggcccctg ccaccggctt gccatcagca tcggttactt
     8461 taccgcggat ggtttgtgga gcaggttctt caatttcatt ggtggaaagc acgatcagtt
     8521 cgctttccag caatttgtag ctgatgcctg tgccttcaaa caactggttc agcacattta
     8581 ccagcaattc attgttcgca ttcagcgaca ctttgccagt gtttttcagc acttcctggt
     8641 tgtacaagaa gcggtactgg ctctttttct caatttgctg aagggcctgc ttcatttctg
     8701 tggactcaag ccggatggag attctctttt gagaaaatcc gtctgcatag gtatgaagcc
     8761 ccgcaaacag catcagaacg atcatcattt tcataacaag cagcgtttgc accaccaaag
     8821 gcttttgaac ctttaggtgc cttaattggt ttactttcat ggctctaata caaatagggg
     8881 gttaatgaat cgaacaatga ggaccttgcc gggaaatcat tgtggttaac tttctgattg
     8941 tcaaaaaggg ggggtgttgc cgcatcctcc tttttttatc cttaacctga atgcaatttg
     9001 tttttcatag tcaagcagtt tatttggatg tttttgtaat ggtgatcgta tttccgttga
     9061 cctggaatcc gaatttggcg gtcagttgca ttgcctccag tgcctcctgg atggtctcgt
     9121 tttcaaacct gcctgtaaag tggatgtctt ccagtgctgt ttccgcaaat tgaacagtca
     9181 ccccgtacca ccgttccatc ttgttggcaa catcgcgaca tgactcatcg acaaaaacca
     9241 gcctgttgtt tacccatgcg gtttctacgg gcagttgcat ttcatcgtcg agcaccattt
     9301 tagaaatgtg ggccacggcc atcggcggaa tttttgcggt tgatttcggc gatgcattca
     9361 gcagcgggtt gttctgtttt acagaggctc ctgcaatcac cagcttttca ctgggttgga
     9421 ggtagtaggt tttatcaggc tgcccgttca gggtcacttc cactttgcca tgcacaaggc
     9481 tggtttcaga aagatcttca ttgggatagg cccttacgtt gaaggcagtg ccggtaacct
     9541 tgatggtcat tttggaggta tgaatgaaaa atgtcaccgc cttgttgggc accacatcaa
     9601 aataggcctc accgctcagt gtaacgtccc gggtcttggc accaaaatca ttgccgtacg
     9661 taagcctgct gtcggcattg agccatacct gtgtgccatc cggaagctgg atcttggacc
     9721 tggagcccga ccgggtggat acctggttgg cttccggact tttgggcaac attgaaactg
     9781 ccggtttttc ttcagtattg cttttggctg gccataaagc aatcgacaaa accagcactg
     9841 ctgcggcggc ggcccaatac catagttgtt tgcgaacgga aggtcttttg gtggaggcaa
     9901 cgggagcggt atgggctccg ctgatatcca gtccagaccg gagcatgcgg ctgaccaggc
     9961 ggtcataatc agtgtctgag atctgatcac ggctggtttg gtcgcccttc cagatggctt
    10021 caaccgtgtt aagatcctgc tgcatggtag gtaccgaggt gagcaagtcg ttcaactcgc
    10081 tgatctcagc attggttgct tccccggtaa gctttttgcc aaaaagtagc caaacacgat
    10141 tttccataag cagcaatgcc actatggaca acaaaacctt gtgaatcccc caagagatgc
    10201 taaaaaaaac ttaagagaac attcgatcag gcctttttgg ggcggccggg agcaatgtca
    10261 atcatgtgct cctgttggta atcgctcaac accatggcaa tttttttgag cgcaatggca
    10321 atctggttct ccactgtttt gggctgcaaa tgcagcaatt ccgctacttc tttctgcttc
    10381 aggccatcct cttttaccaa tttgaatatg gtcttgcact gcggcggcaa gctattcaca
    10441 gcctcaagca agcggttctc caattcgcga ctcatcatca gttgctgcgg atcggcggat
    10501 atggcctcaa tttcggtacg cagctgctct atttgcaaag gctggaattg ccggtgcgat
    10561 ttgagctggt tgatgctgaa attgcgggtg gctatgtaga ggtagagttt caggttgtgg
    10621 atgtggtcca gcgttttgcg cttcatccaa accctcatga acacgtcatc taccgcttct
    10681 tctgcttcct cagtggaatg actgatagaa aaagcaaatt ttttaagccc gggttgaaac
    10741 ctgcggaaca gctctttgaa tgccagcgca tcttcaaagg ctgcgatcct gtgctgcaat
    10801 tccgatatgt gcaggtcttc gtacatggtg ggcaaacgtt gtaacgaaga taccgtcaaa
    10861 tacattctta aaatttctga tttatgtcat ggttcaaaga atcacgggtt cgggcccttg
    10921 catgcgcctc ccggcgcatt tatctccgaa aaaatcgaag gcagctgagc ggcctgactt
    10981 tcggaaaggt tgcaaatgct gctcaatcag ccccacattc aatgaacagt aaggcttcac
    11041 ccattttgac gtcgctcttt tcaccccaaa tctcctacat ttgccgccgc agaatccact
    11101 gcaggactct tagctcaggt ggttagagcg gctgactcat aatcagcggg tcgggggttc
    11161 aagtccctca gagtccacca gtcaaaaagc ccggataaca cgggcttttg ttttaactaa
    11221 tccttattga agccactttt accttagcca actttaatat cccatatgcg ccagctgacc
    11281 gctttgttcc tgcttcttgt ttgtgccact gcatttggcc agcaaaaaga cagtgcccaa
    11341 gtctccaaaa aagaactcta ctccaaaaag tttgatttca aaaaccgggc aaacgatcat
    11401 ttcatgttgc agtttggcta cgatggctgg gtgagcaaac cggatagcat caacgttacc
    11461 ggcttcagcc gtcacttcaa tgcatacgtt ttcatcgaca agcccttcaa gaccgaccct
    11521 cgctggagcg ccgccattgg tgccggcgta ggcagcagca acatcttttt tgataaaatg
    11581 tcggtgcgac tggcagcgaa caaccagcaa cagcaggttg tgtttaaaga cttggcagac
    11641 accaatcatt tcagaaagtt caaactgacg aatgtatggt tggaagcccc gattgaactg
    11701 cgctttgccg ccaacccgct caataccaac aaaagcttca aagttgcttt gggcgccaaa
    11761 gtgggcctta tggtatcagg ctataccaag ggccgcgact ttcggaatag tgacgggcaa
    11821 tccatctatt ccaacaagta catcctgaag gaaaaagacc gatccttctt taacagcacc
    11881 cgtctggctg ctacattcag ggtggcctat ggcatatttg gcatccacgg cgcctaccag
    11941 attcttaacc tcttcaggga atcaagcggc cccccggttc gcccctggag tataggcatc
    12001 accatcagtg gtttgtaagt gtgtctctta ccattataat attgaaacct tgccacgctg
    12061 gtaaggtttt atttttgccg ctacaaatac ccgccagacc ttgattgaaa aaaaacaaat
    12121 aaaagaacag gagaaagcca ttctagtagg attggtgcat caaaaccaaa ccgaggcaca
    12181 aaccaaggaa ttcctcgatg aattggcctt cctggctgaa accgccggag ccgagagcat
    12241 caagcgtttt tggcaaaaac tgccgcaccc ggataaggcc acatttgtgg gcaaaggcaa
    12301 actggaagaa ataggcacct atgccaaact gaaaggggcc gacctgctca ttttcgacga
    12361 cgaactgagt ggatcacaaa tcagcaacat cgaaaaggca acgggtatca aaaccattga
    12421 tcgcagcgac ctgatcctcg acatattcgc ccgccgtgcc aaaacagcgc aggcccgtgc
    12481 ccaggttgaa ctggcacaat accaatacct gcttccccgc ctgcgtggca tgtggaagca
    12541 cctcgaacga caagggggtg gcattggtac ccgcggtccc ggtgaaaccg aaattgaaac
    12601 cgaccgccgg attgtacgcg acaaaatatc attgctcaaa aacaagctca aagactacga
    12661 taagcaggct ttcacacagc gcaaggaaag aggcgaattc atccgggtgg cattggtagg
    12721 ctacaccaac gtgggcaaaa gcaccatcat gaacctgctg agcaagagcg atgtgtttgc
    12781 cgaaaacaaa ctgtttgcca cgctggatac caccacccgc aaagtagtgt tcgaaaacac
    12841 gcccttcctg ctgagcgaca cggtgggctt tatccgaaag ctgccgcacc acctggtgga
    12901 aagctttaag agcacgctgg atgaagtgcg ggaagcggat gtgttgctgc acgtggtcga
    12961 cattggccac ccgcaatacg aagaccaata cgcggtggta aacaaaacac tgcaggaact
    13021 gggcgcccac gacaagcccg tcatcaccat cttcaacaag ctggatctat acgagcagca
    13081 tactttcgac aaatggctgg atgaagaagt gaagcagcaa ctgctgcgtg atttggaggc
    13141 ccgctggcaa cgcgaaacgc attacaacgc ggtgttcatt tcggcaactg aaaaaagaaa
    13201 tatcgaaggg ctgcgcaaaa ccatcctcga caaagtgcgc cagcactatg cggtgcgcta
    13261 cccttacaaa accaatttct attaagcccg caggtacctg cgaaccgtcg agcggttggt
    13321 gagccagatc agggccagta ccaacaacat ggccagcagc gttacccaac tgataaacgg
    13381 gctgatgtac atctgctgcc ccatcaacaa ttggtgcaat acccactgca ccgccgacag
    13441 gccggcaatt accgctgcca tcaccaatcc gtttaccggc atgaactgtt gcatcaggaa
    13501 tgcctgcaag tttcgcggtg aggcgcccag tgtggtcagc agttcaatat cgtttttgct
    13561 gctggcaatg gtaagctgaa taaacaggct gaacaccagc atgccaaaca acagcattac
    13621 caggccaatg cctcccacaa tgcctacaat ccagttcaca atcacccgca ccttgctgaa
    13681 ccgggtcttg tcggtattgg tgcgccagcc gcggtccgcc aggtatttca ccaaccttgg
    13741 gtccgaaggg tcattcgttt tgatgacaat gcgggtagtc acttttttat cgctgtagcc
    13801 cagttgtgca ttggcatagt ccatgaacga ctgcggaatg aggatagaat tcaaccggtc
    13861 ggaggtggcc acaatatgcc ccaccatttc cacttcgcgg ccgttgccac gcagcatcac
    13921 tttcaatgga atggctttca gtgcatccag cgacaattgc ggaaagtttt gctggctcat
    13981 ggccatgccg gtgttgtaca ggtcgatgaa aaaagtggga atgatcacgg gaaggtcccg
    14041 ctggcccgct gtccacttcc aatcgctgct ggtcacatct atgaattcat cgggcacact
    14101 ttcaaaatac gcatcggtgt aaaatggaat ggccgagctg taactgctca cattgacatt
    14161 gaaattggaa gaagtgagaa tgcccagctt ttcaacaaat gcctgtgcct tcaggctgtc
    14221 gatttctgct gccgtgaaag cactgagttc ctttttggtt tgcgtggcgg cggtcacttc
    14281 cttattgatc accaggaaat cggccgtttc attctcattc cttttgccat gcaacagttc
    14341 gttgaagttc atgaaggttt gcactgccag caggataaac aacaccgcca cccccaaacc
    14401 cacggtgccc atcaaaaagc ggaacttacc gacgccggtt ctgatcagct ttcttaatat
    14461 gggtttgata ctcgccgtgt gcatggtcgt tctttacagg ttgagatgct tgtgatacgg
    14521 gaacagttca tcatcgtcga ggtcggtaat gagcaggccg gcgccccggc tcctgcactc
    14581 ctcgtttatc agttgagccg ccttttgcgc attggcccgg tcgaggtggc tgaaaggctc
    14641 atccatcagc agccattcaa aaggctgcac caatgcccgg atgatggcaa tgcgctgctg
    14701 ctcgccatag ctgcaggtag aggtttgctg ctgcaacaca tgcgatacac ccaactgttc
    14761 ggccatggcc ttcaccttat ccagcccgta cagcggctgg cggggcattt tcagcttcaa
    14821 ttcgatgttc tccaacgccg tcagttgccc aaacaaacgc aggtcctgga atatgatgct
    14881 catccttgtc tggcggtata aggccagtgt ttcagcatcc agggtgttca ccggttggcc
    14941 gtcatagtct acccgccctt caaaatcctt tcgcaaattc cagatgacgt gcatcagcgt
    15001 ggttttaccc gttccgctgg gcgccttcac tttgatccac tcaccgggtt gcaaagaaag
    15061 ttcacggttc cagatgtcgg attctctgga aagtactttc tccctgatgg gagccggaac
    15121 caccttgtgc aatgaaatga tcatgaacca gattaatact aagtcactcc gaatgaagcc
    15181 agaggcaata tctcaaaaaa aacattgcca caactcttct gtgtggcaat gatattcacg
    15241 ttgtgcacat ctcaatgcta atcatggatt gacggacgac cctccattct ctcgtacata
    15301 tcttcctcca tcttttcctg cagcttcact tcatcagcgg catacatcag gaatcgaacc
    15361 aattggggca aggcattttt ctggtcggcc agcaccaact ctccgtagct ggatattttc
    15421 ttgccatcga agttggaagt gttgaaccac atttccttaa aggtgcccct tgagcgatcc
    15481 aggatgtttt tcatgtgcac atcggtgctg tcgaaaacat cattgctgat gccttgcagg
    15541 atactggaag catccacata gaatccgagt gattttcctt tgatggccga ggctgctgca
    15601 ggcttcaaag ctccacctga tttggctgcc gcatagccgg cataaatcgc actgtctgat
    15661 gccaccacca gcaaatcgtt ttcgatgcct acaaacacgc tgttgcccac cgctgcattc
    15721 agttcttcac cgccgggata aatccgattg ccttcgcggc gaatgagatt tttgctggct
    15781 gccgtattca acaatttttc gaatgccgcc ttgtcgccaa tgcgcaccgc catcaacacc
    15841 ttggcaaacg gcgtgtgtgc cttgaaagca gcatccttgc cctggtctac atgctgaata
    15901 gaaaaatcgc tgaacatgat ggcaaagtcg cctttgaatg ctttgatcac atcatctact
    15961 gttacgcctg cctctgccat ggcaatgcct gccagcgcat cgaacccggt ctcctgcaaa
    16021 aatgcaggga tcagttcggg cttgaagctg aaagccgcta caccgttcat gttggcactg
    16081 gggtatcttt ccaccaggct catatctacc acggggccgg caaacttctt cagcaggtct
    16141 cccatttttg ttccgatgaa tgaattgctt tccaccacaa ttttcccttg ttcaaagttg
    16201 atcttggtgg tgctgtacat gccttgcagc aaatctttca atttgctttg catggtggcc
    16261 atcaatgggc ttacctgtgt gcctgtcatc gattcgctgt tggtgaaaac agccacatcg
    16321 gcaggttctt ccatcagttg gccgaactca tccagcgaca atacgctttc atcctttttc
    16381 aggtcgaaat atttcttcaa caacgccttc tctccttccg cacctggtat ggcgccaatc
    16441 ggagcatccg aactgtcatt gagcaaatca tagcttgggg tggattgagc ccctaccagc
    16501 atcactgctt ccttggtcca acccaacacc acaccattca tatccaccat cgaaaggctt
    16561 ccttcttttt cgatcttggg ggcatccttt tgcttcgcaa taaaggcttc cagttttgac
    16621 gggtctttca atccggctac cagttgaaag ctcacgctgc cggcggtaac atcaagggca
    16681 ggcactgcta ccag
//
LOCUS       DATIQF010000781         7034 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_240630,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000781 DATIQF010000000
VERSION     DATIQF010000781.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7034
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240630"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..934
                     /locus_tag="VLL95_13450"
     CDS             <1..934
                     /locus_tag="VLL95_13450"
                     /inference="COORDINATES: protein motif:HMM:NF022466.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2851 family protein"
                     /protein_id="HSR39913.1"
                     /translation="LMLDQYQQWISSKRSLPCAGQIKNVPAIVLSSWLDRMLTERLQS
                     KTERISFHLQQTNNHWEEVCWRMVCRYFGTNINADSFEQIAVTVPLSVLAKHKNQIHQ
                     LEALLLGQAAIVHKNLPDDYGQMLYKEYQFLQKKYGLRVVNKPPLFLRLRPVNFPSIR
                     LAQLAMLIHQRVHLFSRLLEATALKDVYDLFDVSANDYWNYHFKPGVPAEFMQKHIGR
                     QTIDIVIINAIAPLLFAYGKWHGEEAQVDKAMNWLQLLSTEKNNITQLFRLAGVAPKS
                     AAHSQALLHLKEEYCDALRCLECAVGNAILKSKQ"
     gene            complement(948..1355)
                     /locus_tag="VLL95_13455"
     CDS             complement(948..1355)
                     /locus_tag="VLL95_13455"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HSR39914.1"
                     /translation="MTASIIYNGALRCSAVHKQSGSQIESDAPTDNRGKGERFSPTDL
                     TCTSLGLCIITTMAIKATDMGIEMAGATVDVQKFMSTEPPRRIVKIVVDVKLPKLELE
                     SKAMEILEATGNACPVARSLHPDIEQLISYEWA"
     gene            1401..2252
                     /locus_tag="VLL95_13460"
     CDS             1401..2252
                     /locus_tag="VLL95_13460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39915.1"
                     /translation="MTISQIAKKVAFALLVVALFPTLAMAQTNRDDRRAAKADRKAKK
                     MDEVNKMIRAEEEGTIVYNKEWSMGLRLYNDGWGAFYQKGKMKTVTKTNWWSLELGER
                     KHPKEEKLSKVDNSGFLFGNPLVYGKQNVFLFTKVGFGQQLLLGGKGNKNGVAVSAQY
                     GGGLTLGLLKPYYVEAQDPLTGITSSIRFRGDNSRTDTLFLDPASVQSRSGFFKGFNE
                     AQIVPGLFARGGFRFDYGRYNELVSAIQIGVNMEYYFKEMPIMALNDADKLFVNIYVA
                     LEFGRRK"
     gene            2297..3220
                     /gene="lipA"
                     /locus_tag="VLL95_13465"
     CDS             2297..3220
                     /gene="lipA"
                     /locus_tag="VLL95_13465"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF009544.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HSR39916.1"
                     /translation="MSCITDSSLSKTKKPSWLRVKLPIGESYRHVRGLVDTHKLHTIC
                     ESGNCPNMGECWGAGTATFMILGNTCTRSCGFCAVATGRPDPVDWDEPQRVAEAIHLM
                     KVKHAVITSVDRDELKDGGSIIWYNTIKAVKALNPETTLETLIPDFKGEKENILRVAE
                     ARPEVISHNIETVERLTRQVRIQAKYWRSMEVLRTLKEAGIRTKSGIMLGLGETKEEV
                     LQTLEDLRYANVDVITIGQYLQPTSKHLPVDRFVHPDEFAELREAGYAMGFDYVESGP
                     LVRSSYHSENHVFAGYGRKVWEQEKKGLAIA"
     gene            3331..4293
                     /locus_tag="VLL95_13470"
     CDS             3331..4293
                     /locus_tag="VLL95_13470"
                     /inference="COORDINATES: protein motif:HMM:NF021507.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HSR39917.1"
                     /translation="MKFSAGVFLLLFVNSTLHLLGQTEMKWHNVDGIYQPLPAGMHVF
                     RSTTPIDGKPNRAFYIVAELKNKSLHFTTQVGNGKRFTPQQYFQQEGNPVVVVNGTFF
                     SFADNRNLNLVMRDGQMKAYNVPAVPKGKDSSQYYYVTRSAIGISKKREADVAWVYSD
                     TGARWPIATESGPVTSTGANPDPTWRDLKVLGVKGGKWKMQTAIAGGPALVYDGKKQL
                     SHKEERMFVNGENDRHPRTAMGYTAEGKLIILAVEGRNPGVAEGASLHHLAEMLVQLS
                     CSEGLNLDGGGSSCLLINGKETIKPSDKEGQRPVPAVFMIYSQK"
     gene            4423..4893
                     /locus_tag="VLL95_13475"
     CDS             4423..4893
                     /locus_tag="VLL95_13475"
                     /inference="COORDINATES: protein motif:HMM:NF025679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4382 domain-containing protein"
                     /protein_id="HSR39918.1"
                     /translation="MLRIYLGDNLRAIPFNAEALNIEIQGVKIKYQGPVADANSNDPG
                     NSEDWVWLNTKPGVYNLVDLFKGNVLQISSGPVPGATVKEIRFVLGRNNSVKMDGVTI
                     PINLPANSEYGFKIPAVMDLAVPIDSLTIDFNTAKSLQRTSSGQFALNPAFAIR"
     gene            complement(4954..5961)
                     /locus_tag="VLL95_13480"
     CDS             complement(4954..5961)
                     /locus_tag="VLL95_13480"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HSR39919.1"
                     /translation="MAAPKNPVSEVASVSKSQQYAIGVDIGGTNTKFGIVDTRGDIFY
                     RGAISTKKHKSVDKFIDDLYEAVYPAIETVGGIAEVKGIGVGAPNGNYYKGTVEYAPN
                     LPWKGVIPLADLIGDRFGLATSLTNDANAAAVGEMMYGAARGMKDFIMITLGTGVGSG
                     IVANGQLIYGHDGFAGELGHTIIIPDGRLHWGTGAYGSLEAYASATGIRLTALELLEK
                     HHNKTSLLRNVPTEELESYHVHECALQGDEIACEVFEYTGKILGMALANFVMFSSPEA
                     IILFGGPTKSGDLLMKPVREHMEANLLPIFRNKVKLLFSLLKESDAAILGASALVWEK
                     K"
     gene            complement(5997..>7034)
                     /locus_tag="VLL95_13485"
     CDS             complement(5997..>7034)
                     /locus_tag="VLL95_13485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39920.1"
                     /translation="YLIVAAVFAAVALVFLFSKLPDGKNDEPFEKANKASGALLAMTG
                     IIIGIIVVGQFTSLSKLTLLIATMVAVIAILFYGNHQAEKNDFGWGAMKYPQLIYGML
                     GIFVYVGVEVTIDNNFGALLKQPGYFNETGLDESQISQYISLYWGSLMIGRWTGAISV
                     FNLKPMAKKIATIIVPFVAFGIILTVNYLYGSKIDNLLPYAICIAVAIAAFFFGQEKP
                     VKTLLTLSILAAIAMVVGVFTTGIVSVFAFISGGLCCSIMWPCIFSLGVGGLGKYTSE
                     GSALLIMMILGGAVIPPLQGAVGDGAIGLHNSYLVAAACFAFLAFLALKLRSVLKKQG
                     LDFDQTVAASH"
BASE COUNT         1933 a         1697 c         1696 g         1708 t
ORIGIN      
        1 actcatgctc gatcaatatc agcaatggat cagcagcaag cgaagcctgc cttgtgcagg
       61 acaaataaaa aacgtacctg ccattgtgct ttcttcgtgg ctcgaccgga tgttgaccga
      121 aaggctgcaa tctaaaaccg aacgcatcag ctttcattta cagcaaacca ataatcattg
      181 ggaagaagtg tgctggcgaa tggtatgccg ctattttggc accaatatca atgcagacag
      241 ttttgagcaa attgcggtaa cggtacccct cagtgttctt gccaaacaca agaatcaaat
      301 acaccagctg gaagctttgc tgttggggca agccgccatt gtacacaaaa acctgcccga
      361 tgattacggg caaatgcttt acaaggaata ccagtttctg cagaaaaaat acgggctccg
      421 cgtggtgaac aagccccctt tgtttttgcg tttgagacca gtgaatttcc cttccatcag
      481 gctggcgcaa ttggccatgc tcatccacca gcgagtgcac ctgttttccc gattgctgga
      541 agccaccgca cttaaggatg tttacgattt attcgatgtg agcgccaatg attactggaa
      601 ctatcatttc aaacctggtg tgccggctga gttcatgcaa aaacatattg gcaggcaaac
      661 gatcgatatt gtcatcatca atgccattgc acccctcctt tttgcctatg gcaaatggca
      721 tggtgaagag gcgcaggtag ataaagcaat gaactggctt cagttgctct ctactgagaa
      781 aaacaacatt acgcaactgt tcaggttggc aggtgtggca cccaaatcgg cggcccatag
      841 ccaggccctg ttgcatctga aagaggaata ttgcgatgcc ttgcgatgcc ttgagtgtgc
      901 ggtgggtaac gctattctca agagcaagca ataatctcag cgcattctca agcccattcg
      961 tagctgatca gttgttcaat atcaggatga aggctgcggg ctaccgggca ggcgttgccg
     1021 gtggcttcca gtatttccat cgccttcgac tccagttcaa gctttggcaa ttttacgtcc
     1081 accacaattt tcacgatgcg gcggggcggc tcggtactca tgaatttttg aacatccact
     1141 gtggcccctg ccatttctat ccccatatct gtggctttaa tggccatagt ggtaattatg
     1201 catagcccca atgaggtaca ggttaggtct gttggtgaaa acctttcccc ctttcccctg
     1261 ttatcggttg gggcatcact ttctatttga gagccacttt gcttatgaac agcagaacac
     1321 cttaacgcgc cattgtagat tattgatgca gtcatcccct taattttggg ctaatttaga
     1381 ggtacaatca ttatttcgac atgaccattt cacaaatagc caaaaaagta gcttttgccc
     1441 tgctcgtcgt cgccttgttt ccaacattgg ccatggcaca aaccaatcgt gacgacaggc
     1501 gagcagccaa agctgataga aaggctaaga aaatggacga ggtgaacaag atgatcagag
     1561 cagaggagga aggcaccatt gtttacaata aggagtggtc catgggcttg cggttgtaca
     1621 acgatggttg gggtgcattt taccaaaagg gtaaaatgaa aacagtgacc aaaaccaact
     1681 ggtggagcct cgaactgggt gaacgcaaac accccaagga agaaaaactt tcgaaggttg
     1741 ataattccgg gttccttttc gggaatcccc ttgtgtatgg aaaacaaaac gtattcctgt
     1801 ttaccaaagt aggcttcggc cagcaattgc tgttgggtgg caaaggaaac aagaatggtg
     1861 tggcggtttc tgcacaatat ggcggcggct tgacgctcgg attgctcaaa ccttattacg
     1921 tggaggccca ggatccactc acgggaatta cgtcatccat caggttcagg ggcgacaaca
     1981 gcagaacaga tactttgttc ctggatcccg cttctgtgca aagcaggtct ggatttttca
     2041 aaggattcaa tgaagcacaa atagtgcccg ggctgtttgc ccgcggagga ttccgttttg
     2101 attatggtcg gtacaatgaa ttggtaagcg ccatccagat tggagtaaac atggaatact
     2161 atttcaagga aatgcccatc atggccctga acgatgcaga caagttattt gtaaatattt
     2221 atgtggctct tgagttcggt cggagaaaat aggctgggtt cacgaagcac caatttcatt
     2281 taacagagaa gatcaaatga gttgtataac agattcatca ttatctaaga ccaaaaaacc
     2341 ttcctggctg cgggtgaagc tccccattgg agaaagttat cgccatgtac gcgggttggt
     2401 ggatactcat aaacttcata ccatttgtga aagcggcaac tgcccgaaca tgggcgaatg
     2461 ctggggcgca ggtactgcca ccttcatgat tttgggaaac acctgtaccc gcagctgcgg
     2521 attttgtgcc gtagccaccg gccgtcctga tcctgttgat tgggatgaac cgcagcgggt
     2581 tgccgaagcc attcacctga tgaaggtgaa gcatgcggta ataacctcgg tagatcgtga
     2641 tgaactgaaa gacggcggca gcatcatctg gtacaatacc atcaaggcag tgaaagcctt
     2701 gaatcctgag acaacgctgg aaacgctgat tcctgatttc aagggagaaa aggaaaatat
     2761 cctgcgggtg gccgaagcca ggcccgaagt tatcagtcac aatattgaaa ccgtagagcg
     2821 cctgacacgg caagtacgca ttcaggcgaa atactggcgc agcatggagg tacttcgcac
     2881 attaaaggaa gccggcatcc gcaccaagag cggtatcatg ctgggccttg gcgaaaccaa
     2941 agaagaagtg ttgcaaaccc tggaggacct ccgatatgca aacgttgatg tcatcaccat
     3001 cgggcagtat ttgcagccta cttcaaaaca tttgcccgtt gaccgtttcg ttcaccccga
     3061 tgaatttgca gaactccgcg aagccggtta tgcaatgggt tttgattacg tagaaagcgg
     3121 tccattggtg cgcagttcat accacagcga aaaccacgtg tttgccggct atggccgcaa
     3181 agtatgggag caggaaaaga aaggattggc tattgcctga gcatatttct ggaaccagaa
     3241 gaaaaagaca cctgcactgg cgggtgtttt ttattgcaca tgttcacaat catgatttgc
     3301 cggctgaaac tggtactaac tttcccgatc atgaaattct ctgcaggcgt tttcttattg
     3361 ctgtttgtga attcaacatt gcatttgttg ggccagacag aaatgaaatg gcacaacgta
     3421 gatggtattt accagccgct gcctgctggc atgcatgtgt tccgcagcac cactcctatt
     3481 gatggaaagc ccaaccgggc attttacata gtagcagaac tgaaaaacaa atcccttcat
     3541 tttaccaccc aggtgggcaa tggcaaaaga ttcacccctc agcaatattt tcagcaggaa
     3601 ggaaatccag tcgtggtggt aaatggcacc tttttctcat tcgccgacaa caggaacctg
     3661 aacctggtaa tgcgagatgg ccaaatgaaa gcttataatg tacctgctgt gcccaagggc
     3721 aaggacagca gccaatatta ttatgtcacc cgcagcgcta ttggaatcag taaaaaaagg
     3781 gaagccgacg ttgcatgggt ttattccgac acgggcgccc ggtggcccat tgccactgaa
     3841 agcgggcctg tgaccagcac aggtgccaac cccgacccga catggaggga cttgaaagtg
     3901 ttgggcgtga aaggaggaaa gtggaaaatg caaactgcta tcgccggtgg tcctgcattg
     3961 gtttatgatg ggaaaaagca attgtcccac aaagaagaac gcatgtttgt aaacggggag
     4021 aatgaccggc acccgcgaac tgccatgggc tatactgcag aaggcaagct gatcatactg
     4081 gcggtggaag gccgaaatcc aggggttgct gaaggcgcct cccttcacca cctggccgaa
     4141 atgcttgttc aactgtcctg ctctgaaggc ctgaacctgg atggaggagg aagcagttgc
     4201 ctgctcatca atgggaaaga aaccataaaa ccttccgaca aagaagggca acgaccggtg
     4261 cctgccgtct ttatgattta ttcccaaaaa tgatgtttaa acaaatttgg cacggttttt
     4321 agtgttatat caatgaattg ctcaatgcgg aacttgttaa ccctcatact aagctgcgct
     4381 ttacttgcct cctcgtgcaa aaaagaggag cgaggcgata ccatgctgcg catctacctg
     4441 ggtgacaatc tcagggcaat ccccttcaat gccgaggcat taaacattga aattcagggc
     4501 gttaagataa aataccaagg ccctgttgca gatgcgaaca gcaatgaccc cggcaatagt
     4561 gaggattggg tttggcttaa taccaagccc ggggtttata acctcgtaga tctttttaaa
     4621 ggcaatgttt tacaaatctc cagtggacca gtgcctggtg ccactgttaa ggaaatacga
     4681 tttgtactag gcagaaacaa ttcggtgaag atggacggcg ttactatacc gatcaatctt
     4741 cccgcgaaca gcgagtatgg cttcaaaata ccagcagtaa tggatttagc tgtaccgatt
     4801 gactcgctga ccattgattt taataccgcc aaaagtttac aacgaaccag tagcggtcaa
     4861 tttgcactca acccggcgtt tgctatcaga taagaacgac aagggacctg cttctgcggg
     4921 tcccttaatt ttttcagccg tttcttttgt cctttatttc ttttcccaaa cgagggcact
     4981 agcccccagg atagctgcat cactttcctt cagcaaactg aacagcagct tcactttatt
     5041 gcggaatatg ggcaacaagt ttgcctccat atgttccctc acaggcttca tcagcaggtc
     5101 tcccgacttg gtgggccctc caaataaaat aatggcctca ggcgaagaga acattacaaa
     5161 attggcaagc gccattccca ggatttttcc tgtgtattca aatacctcgc aagcaatttc
     5221 atcgccttgc aatgcgcatt cgtgcacatg atagctttcc aactcttccg ttggaacatt
     5281 ccgaagcaag gaggttttgt tgtgatgctt ttccagcaat tccaatgcgg taagccttat
     5341 tccggtggcg gaggcatagg cttccaaaga accataagcg ccggtgcccc agtggaggcg
     5401 tccatcggga atgattatgg tatgccccaa ttcacctgcg aagccatcgt gtccgtatat
     5461 cagctggccg ttggccacaa tgccgctgcc tacccccgtt cccagcgtga tcatgatgaa
     5521 atctttcatg ccacgggccg cgccatacat catctctcct actgcagctg cattggcatc
     5581 attggtaagc gatgtagcca atccaaaacg atcaccaatc aaatcggcca ggggaatcac
     5641 gcctttccag ggaagattgg gtgcatactc aacggttccc ttgtaatagt tgccgttggg
     5701 cgcacctacg ccaatgcctt tcacctctgc tataccgcca acggtttcga tggcaggata
     5761 aacggcttca tataaatcat caatgaactt atctaccgac ttatgctttt tagtgctgat
     5821 ggctccacgg taaaaaatat ctccacgggt atcaacgatt ccaaattttg tattggtacc
     5881 tcctatgtca acgccaatgg catattgctg cgatttcgaa acggaggcca cttcactcac
     5941 ggggttcttt ggtgctgcca atttgtatct ttttagatgt atgaacagaa ttcgatttag
     6001 tgcgatgcgg caacagtctg atcaaagtca agaccttgct ttttcaacac agaccttaac
     6061 ttaagtgcaa ggaatgcaag gaacgcgaaa caagccgcag ctacaaggta ggagttgtgc
     6121 aggccaatag cgccatcacc aacggcaccc tgcaacggag gaataacagc gccgccaagg
     6181 atcatcatga taagcaaggc ggagccttcg ctggtgtatt tgccaaggcc acctacgccc
     6241 agcgagaaaa tacagggcca cataatggag caacaaagac cgcctgaaat gaatgcgaac
     6301 acagaaacga tgccggtggt aaacacaccc accaccatgg caatggcggc cagaatgctc
     6361 agtgtaagca gggttttaac cggcttttcc tgtccaaaga aaaatgctgc aatggctaca
     6421 gcaatgcaaa tggcataggg aagcaggttg tcgatcttgc tgccatacag gtaattcact
     6481 gtcaatatga tgccgaaagc cacaaagggc acaatgatgg tagcgatctt tttggccatg
     6541 ggtttaaggt tgaaaacact gatggccccg gtccagcgac caatcattaa actgccccag
     6601 tacaaggaaa tgtattgaga tatctggctt tcgtccaacc cggtttcatt gaaatagccc
     6661 ggctgcttca gcaaggcgcc aaaattgtta tcgatggtaa cctctacgcc cacatacaca
     6721 aaaatgccaa gcatgccata aatcaactgc ggatatttca tggcgcccca gccaaaatca
     6781 ttcttttcag cctggtgatt gccgtagaac agaatagcaa taacagccac catggttgct
     6841 atcagcaacg taagctttga aagcgaagtg aactgcccca ccacgatgat gccgatgata
     6901 attcccgtca tggccagcaa tgcaccggat gccttattgg ctttttcaaa tggctcgtca
     6961 tttttaccat cgggcaattt agaaaacagg aagacgagtg caaccgcggc aaacacagcg
     7021 gctacgatca ggta
//
LOCUS       DATIQF010000782         4537 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_119110,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000782 DATIQF010000000
VERSION     DATIQF010000782.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4537
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119110"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..557
                     /locus_tag="VLL95_13490"
     CDS             <1..557
                     /locus_tag="VLL95_13490"
                     /inference="COORDINATES: protein motif:HMM:NF013460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HSR39921.1"
                     /translation="FIAAYIFLFNFLFRIYWGFVGNKYADWKNFIPTNRKFLREFWHV
                     IKMDILMLKGKEHMSVGHNAVAGFTYFLMFIAFLVQCLTGFGLYSSMSQWWFPKLFAW
                     VPAVFGGDIVVRQIHHWATWFFVLFTIVHVYLVFYHDYVEGRGEISSMGGGWKFIEEE
                     YFEHHKDQKAQSGNAPASDQATPA"
     gene            596..1093
                     /locus_tag="VLL95_13495"
     CDS             596..1093
                     /locus_tag="VLL95_13495"
                     /inference="COORDINATES: protein motif:HMM:TIGR00072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HSR39922.1"
                     /translation="MERFDESTAPKILVLGIGNYLMGDEGVGVHLARHLQQIQLPDCV
                     DVLDGGTGGFHLLEYFEKYQHIIMIDAALDDNAPGTINTIRPKFAADFPRAMSTHDIG
                     MRDLVNALQLLGRMPDVWLITVSIESLQQQGIELTPAIKEVLPCLEKKTSQLIESLAC
                     KEVAF"
     gene            complement(1102..2430)
                     /locus_tag="VLL95_13500"
     CDS             complement(1102..2430)
                     /locus_tag="VLL95_13500"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSR39923.1"
                     /translation="MNKKQIFCGILATLLQLAMVQAYSQAISGSPLKKLNRIITATEV
                     ERIETALSSDAMEGRKTFSPGIDKAAAFIAESFKSSGVKAGGNNGGYLQSFEMYVASL
                     VSASVTTDGVRIPKENIICQTNAEKLVITHADNYEVVSINASDNFIASYRPLRNKTNN
                     LVVFIDTAHKAIFNRLKSFSGPRFPSNTNQIYVLTSAAKPSVFSIDLDIKLAEQKLAN
                     VVAVIPGKSKPDEIVIFSGHYDHIGYGKPNEKGDSLYNGANDDASGTTAVITLAKYFQ
                     KVGGNERTLVFAAFTAEEVGGFGSQYFSKQYDPAKVVAMFNIEMIGTESKWGTNSAYI
                     TGYEKTDMGKILEKNLEGTAFKFHPDPYPDQQLFYRSDNATLARLGVPAHTISTSKMD
                     NEPHYHKASDEIGTLDMKNMTEVIKSIALSSRSIISGKDTPSRVKVDELR"
     gene            2461..>4537
                     /locus_tag="VLL95_13505"
     CDS             2461..>4537
                     /locus_tag="VLL95_13505"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR39924.1"
                     /translation="MAAYECACLDKRYRYQNMVNVYCDFLELVPSKEKCFILTMAPFS
                     KTDKMKSLFKSLIMLFACIYSGIAEGQDFDAFIRQGDEFSDKRMYAEAADSYTDAIRL
                     KPKNGFAYNRRGNAFLLNKQYDLAIEDHTTAIGLDPKDAYAYGNRGAAWRAKGAFDLA
                     ISDFDMALNLNPKNTWAYNSRGLAYQGKKDYASAIENFSACLAIDPNSAWAYLNRGTS
                     YQYLKQFDLALNDLTNAIKIDGSNGSAFAWRGYVYGRMNNFEAAIEDYSTSIKLNAKD
                     PISFNNRGLFYNRLGEYEKAVADYKACIEIDPQYGMAYIGVISPLLRLRHFDEAVGYY
                     NAYIEKKLTSFLESGNNQYYQHYLKGLMLLQEDKNEDALESLLSASDAFGETFNEETK
                     RSYIDILFLQGVALEKLNRTTDAQILYEQSLVIDSRQPDLEVVLQRLHELDSKTVQSD
                     QSIPEISVITPSSSNVELASGTIEVVGRAKDVSGIEYVKINGEPVEKLEEDGLFISKV
                     KLTPGENTWVITASDKNGNIASQSMVLNVTGGNSRGTAIVGSGDGKTSVVMETEPVYH
                     AILIAEQNYDDPKIPDLQHPKRDALELGTILEKNYGFLAANIDTLFDKSREDIMMAIV
                     KKSSSLNENENLIIFYAGHGIAEKDKFGDVDGYWIPSTARSGLSATYISTDDINKAIK
                     RSNAKHILII"
BASE COUNT         1213 a          912 c         1122 g         1290 t
ORIGIN      
        1 atttcatagc ggcctacatc ttcctgttca atttcctgtt caggatttat tggggctttg
       61 ttggaaataa gtatgcagat tggaagaatt ttattcctac caacaggaag tttttgaggg
      121 aattctggca cgtgatcaag atggacatcc tgatgctgaa aggcaaggag cacatgagtg
      181 tgggccacaa cgctgtggca ggatttacct atttcctcat gttcatagcc ttcctggtgc
      241 aatgccttac cggttttggg ttgtattcca gtatgagtca atggtggttc cccaagttgt
      301 ttgcctgggt gcctgctgtg tttggcgggg atatcgtggt gaggcaaatt caccactggg
      361 ctacctggtt ctttgttctt tttaccatcg tacatgtgta tcttgtattc taccacgatt
      421 atgtggaggg gcgtggtgag atttccagca tgggtggagg ctggaaattt atcgaagaag
      481 aatactttga acaccataaa gaccagaagg cgcagtccgg caatgctcct gcttctgatc
      541 aggctactcc ggcataagcc gtgtccttct tgtggactta aaaacaatgg gtacaatgga
      601 gcgatttgat gaatcaaccg caccaaagat tttggtgctg ggtatcggca attacctgat
      661 gggcgacgaa ggggtggggg tacacctggc ccgtcaccta cagcaaatcc agttgccgga
      721 ttgcgtggac gtattggatg gtggtacagg aggattccat ttgctggaat acttcgaaaa
      781 gtaccagcac attattatga ttgacgctgc gctggatgac aatgcgcctg gcaccatcaa
      841 tactatccgt ccaaaatttg cggctgattt tccaagggcc atgagcactc acgacattgg
      901 catgcgtgac ctggtgaatg cgcttcaatt actggggcgc atgcccgatg tatggctcat
      961 tacggtgagc attgaatcgt tgcagcagca agggatagaa ctgacgccgg ctattaaaga
     1021 agtgttgcct tgcctggaga aaaaaacaag ccagctgata gaatcgctgg cttgcaaaga
     1081 ggttgctttc tagcaacttg cttagcggag ttcatccacc tttaccctgc ttggggtgtc
     1141 tttccctgaa attatgctcc ggctgcttaa agctattgac tttattactt cggtcatgtt
     1201 tttcatatcg agggtgccta tttcatcgct ggctttgtgg tagtgcggct cattatccat
     1261 cttgctggta ctgatggtgt gcgccggaac acccaaacgt gccagggtgg cattgtcgct
     1321 tctgtaaaac agctgctgat cagggtaagg atcgggatgg aatttgaagg cagtgccttc
     1381 gaggttcttt tcgaggatct tgcccatatc cgttttttcg taaccggtga tatatgcgga
     1441 gttggtaccc catttgcttt ccgtgccaat catttcaata ttgaacatgg ccaccacttt
     1501 agcggggtcg tattgcttcg aaaaatactg tgaaccaaaa ccaccgacct cttcggcagt
     1561 gaaggctgcg aaaaccagtg ttctttcatt gccgcccacc ttctggaaat atttggcgag
     1621 ggtaatgact gctgtagtgc ctgaagcatc gtcattggcg ccattgtaaa gcgaatcgcc
     1681 tttttcattg ggcttgccgt atccaatgtg atcgtaatga ccactgaaga tcactatttc
     1741 atcgggcttg cttttgccag ggataaccgc taccacgttg gccagttttt gctcagccag
     1801 tttaatatcg agatcaattg aaaaaactga tggctttgct gcggaggtca gcacatagat
     1861 ttggttggta ttgctgggga accgcggtcc tgaaaaactt ttcagccggt tgaaaatagc
     1921 cttgtgggct gtatcaataa acacaaccag gttattggtc ttattacgaa gcggtcggta
     1981 ggaagcgatg aaattgtctg aagcgttgat ggaaactact tcataattgt cggcatgggt
     2041 gatcaccaat ttttcggcat tggtttggca tataatgttc tctttcggaa ttcgaacccc
     2101 gtcggtggtg acagaagcgc tgaccagtga ggctacatac atttcgaatg actgcaggta
     2161 ccctccattg tttccaccag ccttcactcc ggaggattta aatgattcag caataaatgc
     2221 agctgcttta tcaataccag gggagaaagt ttttcgcccc tccatggcat cgctgctcag
     2281 ggcagtttca atgcgctcta cttcggtagc agtaattatt ctattgagct ttttgagggg
     2341 agagccagaa attgcctggg aataggcctg caccatagct aactgcagca gtgtggcaag
     2401 tatgccgcaa aagatttgtt ttttattcat gtgtttgctt aatggcttca aatgtatcga
     2461 ttggccgctt atgaatgtgc ctgtttggat aagcgataca gataccaaaa catggtaaat
     2521 gtttattgcg atttccttga attggttcct tccaaagaaa aatgctttat tttaacgatg
     2581 gctccctttt caaaaacaga taaaatgaaa tcgctattca aatcgctgat catgctgttt
     2641 gcatgcattt atagcggcat tgccgaaggc caggattttg atgcctttat caggcaaggc
     2701 gatgagtttt cggataaacg aatgtatgcg gaagcagctg atagttatac cgatgccatt
     2761 cgtttgaagc ccaagaatgg gtttgcttat aacagaagag ggaatgcatt ccttttgaac
     2821 aagcagtatg atcttgccat tgaagatcat actactgcca tcgggctgga tcccaaagat
     2881 gcctatgctt atggcaacag gggcgccgcc tggagggcaa agggtgcttt tgatttggcc
     2941 ataagtgatt ttgatatggc actgaacctg aacccgaaaa atacctgggc gtataattca
     3001 agaggtttgg cataccaggg gaaaaaggac tacgcctccg ctatcgagaa tttttctgcc
     3061 tgtttggcca ttgatccaaa ttctgcctgg gcctacctca accggggaac aagttaccaa
     3121 tacttgaaac agttcgactt ggccttgaat gatcttacca atgctattaa gattgacgga
     3181 agcaatggat cggcttttgc atggaggggt tatgtttatg ggcgcatgaa caactttgaa
     3241 gcagcaattg aagactattc tacttctatt aaattaaacg caaaggatcc aataagtttt
     3301 aataaccggg gattgtttta caataggctc ggtgagtatg aaaaagcagt ggctgattat
     3361 aaagcatgca tagagataga cccgcaatac ggaatggctt atatcggtgt tatttctccg
     3421 ctgcttcgtt tgcggcactt tgatgaagcg gttggatact acaacgcata catcgaaaaa
     3481 aaattgactt cttttcttga atctggcaac aatcagtatt atcaacatta ccttaaaggt
     3541 ttgatgcttc tgcaggaaga taaaaatgag gatgcgcttg aatctctgtt gagtgcttct
     3601 gatgcttttg gtgaaacgtt taatgaagaa accaaacgtt cctatattga tatacttttt
     3661 ttacaaggtg ttgcgctgga gaaactaaac cggacaacag atgcacaaat actgtatgaa
     3721 caatcgctgg tgatagattc gcgccagcct gatttggaag tggtgctgca aagactgcac
     3781 gaacttgact caaagaccgt gcaaagcgat caatcaattc ctgaaatatc cgtcattact
     3841 ccttcatctt ccaatgtgga actggcatcc ggaaccatcg aagtggtggg cagggcaaaa
     3901 gatgtttcgg gtattgaata tgtaaaaatc aatggggagc cagttgaaaa attagaggaa
     3961 gatgggttgt ttatttcgaa ggtaaaattg acaccaggag aaaacacatg ggtgataaca
     4021 gccagtgaca aaaatggaaa tattgcctct caaagcatgg ttctgaatgt gacgggtggt
     4081 aatagcaggg gaacagcaat tgttggcagc ggcgatggaa aaacttctgt tgtgatggaa
     4141 actgagccag tgtatcacgc cattttgatt gccgagcaga attatgatga tccgaaaatt
     4201 cctgacctcc aacatcctaa aagggatgcg cttgagttgg gtacgattct tgaaaagaat
     4261 tacggctttc tggccgcaaa tattgataca ctttttgata agagcaggga ggatatcatg
     4321 atggctattg tgaaaaagtc gagttctctt aatgaaaacg agaacctgat cattttttat
     4381 gctggacatg gcatagcaga aaaggacaaa tttggcgatg tagatggtta ctggattcca
     4441 tccacagcca ggagtgggct gagtgccaca tatatttcaa ctgatgatat caacaaagcc
     4501 ataaagcgca gtaatgccaa acacatttta ataatcg
//
LOCUS       DATIQF010000783         3291 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_42678, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000783 DATIQF010000000
VERSION     DATIQF010000783.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3291
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42678"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..345
                     /locus_tag="VLL95_13510"
     CDS             <1..345
                     /locus_tag="VLL95_13510"
                     /inference="COORDINATES: protein motif:HMM:NF022441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2807 domain-containing protein"
                     /protein_id="HSR39925.1"
                     /translation="ADNKLDFSVAGSGDIEADIDCPQVDADIAGSGTIKLSGQTREVK
                     IDIAGSGDFKAVDLLSERTKINIAGSGSAWVFASTNLDISIAGSGDVYYKGNPGNIKR
                     SVAGSGNIKPVE"
     gene            479..1642
                     /locus_tag="VLL95_13515"
     CDS             479..1642
                     /locus_tag="VLL95_13515"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR39926.1"
                     /translation="MILLAALNFTHILDFMIMMPLGNYLMPYFKVNARQFSFAVSAYN
                     YAAFVSGILAAFVVDRYDRKSVLIFGYVGFLVGTLFCALAPSFLLLGLARLVAGLFGG
                     LISAQVLSIVADTFPYEKRGRAMSWLMTAFSFASIVGVPLSLYLARFFEWHAPFYFIV
                     LLGVVVLPAIIRYVPSVKSHINTKHSGVNIVRTLSNVFSVPAQRAAMLFSGTLMLGHF
                     LIIPFINPYMEFNNGFSKTQTPMIYLVGGLTTLGSAVVWGRLADHYGKLRIFTIAGFL
                     SVIPVLIVTNLPHWPFGLVLVPFAFWFAMTNGRTISAQAMVSQVVPPQTRGSFMSFNS
                     SMQQLFTGAASTFAGFIVSSDQQNRILHYEWLGFISVAIILICLLLARRLKVE"
     gene            1729..2703
                     /locus_tag="VLL95_13520"
     CDS             1729..2703
                     /locus_tag="VLL95_13520"
                     /inference="COORDINATES: protein motif:HMM:NF040105.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HSR39927.1"
                     /translation="MEEMFESRTDLGQLREAVERIRQSIGGVIVGQSQMVELMLVGLL
                     CDGHILIEGVPGVAKTLAAKLLARSISVPFSRLQFTPDLMPSDVLGTSIFNPKDLEFQ
                     FKPGPVFSSIVLIDEINRAPAKTQSALFEVMEERQATVDGNTYKMATPFIVLATQNPV
                     EQEGTYRLPEAQLDRFLFKISVGYPSLEEEVLILQQQQHNTTAEMLEAVQPVLHAGEI
                     AWFREQVKQMVVEPKLLEFIAAIVAGTRNNASLYLGASPRASLAILKASKALAAIRGR
                     DFVVPDDIVEVVPHVLRHRIILAPEKEMEGITADELIRQMIDKVPVPR"
     gene            complement(2711..>3291)
                     /locus_tag="VLL95_13525"
     CDS             complement(2711..>3291)
                     /locus_tag="VLL95_13525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39928.1"
                     /translation="GELVKDAESCLSLGFMRTMEDLEGDYFYNYYNKNGDLITGDTDD
                     RVPVDSSRVDVGWLRRPTDRRINLGLFFSDYLTTNKDFKVNMQLLYGSNLPYNIPGSV
                     RYRNALEIPAYLRVDVGFTYQIVGGEKSMRRSHDPFRNFESILVGLDVFNLLDRANVI
                     SYNLIKDFDNNTFAIPNRLTPRLINLKLMARW"
BASE COUNT          781 a          785 c          858 g          867 t
ORIGIN      
        1 gccgacaata aactggattt ttcagtggcc ggtagtggag atattgaagc ggatattgat
       61 tgccctcaag tggatgcgga tattgccggc agcggcacca tcaaactcag cggacaaacg
      121 cgggaagtga aaattgacat agccggcagc ggcgatttca aggcagtgga tttgttgagt
      181 gagcgaacaa aaatcaatat tgccggtagc ggcagcgcct gggtatttgc ttccaccaac
      241 ctggacattt ctattgccgg cagcggtgat gtttattaca aaggcaaccc cggcaacatc
      301 aaaagaagcg ttgccggatc tggaaacatc aagcctgttg aataagaatt tttagtcagc
      361 acaaaacttc ggaggctggc aactgtttat cagtgccagc ttctttttta taatcctacc
      421 tttcaatcca tagcatttgc tgttttagaa gaaaatgacc cgggctgaaa aaatactttt
      481 gatcctttta gcggcgctca actttacgca catcctcgat ttcatgatca tgatgccgtt
      541 gggcaattac ctcatgccat actttaaggt gaatgcccgc cagttttcat ttgcagtatc
      601 agcctataac tacgcggcat ttgtatcagg catcctggct gctttcgtgg tagaccgcta
      661 cgacaggaaa tcggtgctca ttttcggtta tgtcggcttc ctggtgggta cacttttttg
      721 tgcactggcg cccagctttc tgcttttggg attggcgagg ttggtagccg gcttgtttgg
      781 cggattgatc agtgcgcagg tattgagcat tgtggccgac acttttccat atgaaaaaag
      841 aggtcgtgcc atgagctggc tgatgacggc attttctttt gcttccatag tcggtgtgcc
      901 gctcagtttg tacctggccc gcttttttga atggcatgct cctttctatt tcattgtgct
      961 gttgggtgtt gtggtgttac ctgccatcat ccggtatgtt ccttcagtaa aaagccatat
     1021 caataccaag cattccgggg tgaatattgt gaggacactc agcaacgtgt tcagtgttcc
     1081 ggcgcaaagg gccgccatgc tgttcagcgg aacgcttatg ttggggcatt tcctgatcat
     1141 cccctttatc aatccctaca tggaattcaa caatggattc agtaagacac aaacacccat
     1201 gatctacctg gtagggggcc tcaccacact gggtagcgcc gtggtatggg gaaggctggc
     1261 ggatcattat ggcaaactcc gcattttcac cattgccggt tttctatctg tcatacccgt
     1321 tcttattgtc accaatttgc cacactggcc attcggcctg gtgctggtgc cgtttgcctt
     1381 ttggtttgcc atgaccaacg ggcgcaccat cagtgcccag gccatggtaa gccaggtggt
     1441 gccgccgcaa acccgtggca gtttcatgag tttcaattct tccatgcagc aattgtttac
     1501 tggggcagcc agcacgtttg caggcttcat tgtttccagc gaccagcaaa accgcatcct
     1561 gcattacgag tggctgggat tcatcagtgt ggccatcatt ctcatttgcc tgctgctggc
     1621 acgccggctg aaagtggaat gacaattggt tgcttacagg caaaatctgc tgttcatcat
     1681 tgatcctttc tgaataaatt gccttcttaa accagtaagc ataagtgcat ggaagaaatg
     1741 tttgagtcaa gaacggattt gggacagctt cgtgaagcgg tggaaaggat caggcagtcc
     1801 attggtgggg tgatagtagg ccagagccag atggtggaac tgatgctggt gggtttgctc
     1861 tgtgatgggc acattttgat cgaaggcgtg ccgggtgtag ccaaaacact agccgccaaa
     1921 ttgttggctc gcagcatttc cgtgcctttt tcgcgtttgc agtttacccc cgacctgatg
     1981 ccaagcgatg ttttgggtac ctcgatattc aatcccaaag acctggagtt tcaattcaaa
     2041 ccaggcccgg ttttttccag cattgtgctc attgatgaaa ttaaccgggc accggccaaa
     2101 acgcagtcag cgttattcga agtaatggaa gagcgacagg cgacggtgga tggcaacact
     2161 tataaaatgg cgacgccctt cattgtactg gctacgcaaa acccggtgga gcaggaggga
     2221 acctaccggc tgcccgaggc gcagttggat cgtttcttgt tcaagatcag cgtggggtat
     2281 ccatcgctgg aagaggaagt attgatactg cagcaacagc aacacaacac cacggccgaa
     2341 atgctggaag cagtgcaacc cgttttgcac gccggcgaaa ttgcctggtt cagggagcag
     2401 gtaaagcaaa tggtggtaga gcccaaactg ctggagttca ttgccgccat tgtagccggt
     2461 acccgcaaca atgcatcgct ttacctggga gcctctcccc gggcatcgct ggccatattg
     2521 aaagcatcca aggcgctggc agctattcgc ggccgcgatt ttgtagtgcc cgatgatatt
     2581 gtggaagtgg tgccgcatgt attgcgtcat cgcatcatac tggcgccgga aaaagaaatg
     2641 gaaggaatta cagctgatga attgatcagg cagatgattg acaaggtgcc ggtaccccgc
     2701 tgatgggaaa ttaccacctg gccatcagtt tcaggttgat gagacgtggg gtaagacggt
     2761 tgggaatggc aaacgtgttg ttgtcaaaat ctttgatcag gttgtagctg atgacatttg
     2821 ccctgtccag taagttgaaa acatccagtc ccaccaaaat gctttcgaaa ttgcgaaagg
     2881 gatcgtgact gcgacgcatg cttttttcac cgccaacaat ctggtaggta aaccctacat
     2941 ccaccctgag ataagcaggt atttccagcg cattccggta gcgaacactg cctggaatat
     3001 tgtagggcaa attgctgccg tacaacaact gcatgttcac cttgaaatct ttgttggtgg
     3061 tgaggtaatc gctgaagaat aaacccaggt tgatgcgcct gtcggtaggg cggcgcagcc
     3121 agcccacatc caccctgctg ctgtctacag gaacccggtc atctgtatca ccggttatga
     3181 ggtcgccatt cttattgtaa taattgtaga agtaatcgcc ctcaaggtct tccatggtgc
     3241 gcataaaacc gaggctcaga cagctttcgg catctttcac caattcgcca a
//
LOCUS       DATIQF010000784         1877 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_119132,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000784 DATIQF010000000
VERSION     DATIQF010000784.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1877
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119132"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..331)
                     /locus_tag="VLL95_13530"
     CDS             complement(<1..331)
                     /locus_tag="VLL95_13530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39929.1"
                     /translation="MQKALASLSLLLWVLVAQAQWPDSLMKSLRFRFIGPDGNRAIAV
                     AGEPGNPMVSYVGAASGGIFKTTDGGISWRPIFDDMDNSTIGAIALAPGKPEHVWVGT
                     GETFLIRP"
     gene            complement(350..1843)
                     /locus_tag="VLL95_13535"
     CDS             complement(350..1843)
                     /locus_tag="VLL95_13535"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase (NADP(+))"
                     /protein_id="HSR39930.1"
                     /translation="MPGYNDATIAQVNEIMQAAATAAIAFRKVPPPRRAAFMKAIADG
                     LENSGDELLHITMAETNLPEARLRGERMRTVFQLRSYADACARGDWQEIRIDTAIPDK
                     VPPKPDIRKMLVPLGPVVVFGSSNFPYAYSTAGGDTASALAAGCPVVVKAHPAHPETS
                     ERVAQIILQAAAVTNMPGNVFAHVHGAAFEVGQALVMHPQTKAVGFTGSYAGGKALFD
                     LANTRREPIPVFAEMGSVNPVYLLPEKLANDAAGIAAQYAGSITLGVGQFCTNPGLII
                     GTMSEGLSRFVQVLAEEIGKIPAAHMLHGGILKSYVSKRADALAQQGVMLVAKGLEGK
                     SDDQAVATIATVDAAVFLSNPLLHQEVFGPYSLIIQCEDESQMLEVARHMEGQLTTTL
                     MATDKDVISNIALLDAVGEKCGRLILNGVPTGVEVCPSMHHGGPFPATTDSRFTSVGV
                     DAIKRFARPLALQNWPDHFLPTELQDANLAGLLRMVNGVMTTEAVIR"
BASE COUNT          475 a          521 c          450 g          431 t
ORIGIN      
        1 cagggcgaat gagaaatgtt tctcccgttc ctacccatac atgttcaggc ttgccaggcg
       61 ccaatgcgat ggcaccaatt gtggaattgt ccatgtcatc gaaaatgggc cgccaggaaa
      121 tgcccccatc tgtcgttttg aaaataccac cagaagcggc accaacatac gacaccatcg
      181 ggttgccggg ttcgccagcc actgcaatgg cacggttgcc atccggacca ataaaacgaa
      241 aacgcaaact cttcatcagg ctatcgggcc attgtgcctg ggcaaccaat acccacagca
      301 aaagagaaag ggatgcaagt gctttttgca taatgcggtt atttagacat tatcggataa
      361 cagcttcagt agtcattacg ccattcacca tgcgcagcag cccggcaaga ttggcatcct
      421 gcaattcggt gggcaggaaa tgatcgggcc aattctgcaa cgccaatggc cgggcaaaac
      481 gcttgatggc atccacccca accgacgtaa atctgctgtc agtggtagcg gggaacggac
      541 cgccatgatg catggatgga cacacttcta ccccggtagg taccccattc aggatcagtc
      601 ttccacactt ttcacccacc gcatccagca aggcaatatt gctgatcacg tccttatcag
      661 tagccatgag tgtagtagtt aattgtcctt ccatgtgccg ggccacttcc agcatttgcg
      721 attcatcctc acattgtata atgagtgaat atggaccaaa cacttcctgg tgcaacaaag
      781 gattcgacaa gaaaacagcg gcatccacgg tggcaattgt agcaacggcc tggtcgtctg
      841 attttccttc cagccctttt gcaaccagca ttacgccttg ttgcgccaaa gcatcggcac
      901 gcttgcttac gtacgatttt aaaatgcctc catgcagcat atgagcagca gggattttgc
      961 cgatctcctc agccaacacc tggacaaacc gggacaatcc ctcactcatg gtaccgatga
     1021 tcaaaccagg gttggtacaa aactgcccta cacctaacgt gatagaaccg gcatattgcg
     1081 cagcaatacc ggccgcatca ttcgccaatt tttcgggcaa caaatacacg gggttaacgc
     1141 ttcccatttc tgcaaacacc ggaatgggtt cccggcgggt gttggccaaa tcaaacagtg
     1201 ccttgccgcc ggcataagaa cccgtgaagc caacggcttt ggtttgcgga tgcattacca
     1261 aagcctgccc tacttcgaat gcagcaccat gtacatgcgc aaacacgttg cccggcatat
     1321 tggtgacagc ggctgcctgc aaaatgatct gtgccactct ctcactcgtt tctggatgcg
     1381 ccggatgcgc tttcaccacc accggacaac cagcagccaa tgcactggcc gtatcgcctc
     1441 ctgctgtaga gtatgcatag ggaaaattgc tggagccaaa taccaccacc ggacctaatg
     1501 gcaccagcat ctttcggata tcgggcttgg gtggcacctt atcgggaatg gctgtatcaa
     1561 tcctgatttc ctgccaatcg ccacgggcac aggcatcggc ataactgcgc aattgaaaaa
     1621 cagtgcgcat tcgttcgcca cgcagtcgtg cttccggcaa attggtttca gccatggtga
     1681 tgtgcagcaa ctcgtcgccg ctgttttcaa gaccatcggc aatggccttc atgaaagcag
     1741 cccggcgggg aggtggcact tttctaaatg caatggcagc cgtggcggct gcttgcatta
     1801 tttcattcac ttgtgctatg gtagcgtcgt tataacctgg catagattgt tttgattaaa
     1861 tggaaatgga aagataa
//
LOCUS       DATIQF010000785         4227 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_179689,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000785 DATIQF010000000
VERSION     DATIQF010000785.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4227
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179689"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..471)
                     /locus_tag="VLL95_13540"
     CDS             complement(<1..471)
                     /locus_tag="VLL95_13540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39931.1"
                     /translation="MNSLQPVYCIAGLGADFRIFENLRIPNATLYPIAWEEPLHNESL
                     PDYAKRLSSQILHEDAMLLGVSFGGMIATEISKHKPIKQTIIISSCKSYSELPYYLRL
                     AGMLRLHQVVPYWVVTRNSTLNRIIFDTRSEREELLLKQLMLKHSNPTWLKRFVN"
     gene            complement(509..1519)
                     /locus_tag="VLL95_13545"
     CDS             complement(509..1519)
                     /locus_tag="VLL95_13545"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR39932.1"
                     /translation="MPADNILLQVDQVSFNLPGHFELAPVSFSLTGNEKLVIAGETGS
                     GKSTLLKLIAGLLQPAAGSISFAHKRVEGPLEKLIPGHPGIAYLSQHYELRNNYIVYD
                     LLDYGSEMSQAEAEQLFRVCEIDHLLQRKTNSGLSGGERQRIALAKLLATKPRLLLLD
                     EPFSNLDSIHKSHIKQVLYNIGQAYPVSMILVSHDPQDMLSWADKIMVMRNGGVLQQA
                     SPEDIYLKPVNSYVAGLFGPFNTVSASWLVANGYPGFSEKLAKMFMLREEHIFIGDNH
                     KQLMATPTRCVFTGPAYRVTLEAGGGTFTCLHHQPVPAGIPVAISIDTDKLWPLQEDA
                     SD"
     gene            complement(1614..2306)
                     /locus_tag="VLL95_13550"
     CDS             complement(1614..2306)
                     /locus_tag="VLL95_13550"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSR39933.1"
                     /translation="MNYGYTPSDTEPPLELPPQEVYHRYPLQLYHYLATKVPVAGKDL
                     LEVGSGRGGGSRYIAQYHSPHSMIGMDLAQNAVDFSNRVHHAPNLKYVQGNAENLPFA
                     DNSFDVVINVESCHAYGSVSKFLAEVKRVLRPGGYLCITDMRGVPGLEKLNAELNSAG
                     MNKIFEDDITEQVVAAIELDETNKWNQIKEAVPARYHKMFGEFAGVAGSQIHLQLKER
                     KLIYCRWVFQKQ"
     gene            complement(2650..>4227)
                     /locus_tag="VLL95_13555"
     CDS             complement(2650..>4227)
                     /locus_tag="VLL95_13555"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HSR39934.1"
                     /translation="AVVEYFGEGATAMSCTGKGTICNMGAEIGATTSTFGYDESMSRY
                     LKATGREEVAALADGIAEHLTGDAEVYANPEQYFDQVIEINLSELEPHLNGPFTPDLA
                     TPISKMKEAAAANNWPTKVEVGLIGSCTNSSYEDISRAVSLAKQVAQKGLKTKAEFTI
                     TPGSEQVRYTIERDGFLDTFAQIGAKVFANACGPCIGMWDRMGAEKQERNTIVHSFNR
                     NFAKRADGNPNTMAFVASPELVTALAIAGDLTFNPITDTLTNEKGEQVKLDPPSGDEL
                     PVRGFAVEDAGYQAPAEDGSGVTVAVSPTSNRLQLLDPFAAWEGTDLKGLKLLIKAKG
                     KCTTDHISMAGPWLKFRGHLDNISNNMLIGAVNYFNEKTDSVKNQLTGAYGPVPATQR
                     AYKAAGVGSIVVGDENYGEGSSREHAAMEPRHLGVRAVLVKSFARIHETNLKKQGMLA
                     LTFADKADYDKIQEDDSIDIMGLTEFAPGKPLTLVLNHADGSKDEISVNHTYNEQQIE
                     WFKAGAALNIIRKQFGA"
BASE COUNT          968 a         1042 c         1084 g         1133 t
ORIGIN      
        1 gttcacaaat cgtttcaacc atgtcgggtt gctgtgtttc agcatcagtt gtttcaataa
       61 caattcctct ctttcgctcc tggtgtcaaa tatgatgcga ttgagcgtac tgttcctggt
      121 taccacccaa tagggtacca cctggtgcaa acgaagcatg cccgctaagc gcagatagta
      181 gggaagttca ctataggatt tgcagctgct tattatgatg gtttgcttta ttggcttgtg
      241 tttgctgatt tccgtggcaa tcattcctcc gaacgaaacg cccaacagca tggcgtcctc
      301 gtgcaatatt tgcgaggaca atctctttgc gtaatccggc agcgattcgt tgtgaagtgg
      361 ctcctcccag gctatggggt acagggttgc attgggaatc cggaggttct caaagatcct
      421 gaaatccgca cccaggccgg caatgcaata aactggctgc aacgaattca ttgggtggta
      481 tacttgaaga atacaaagtt aggcgccatc agtctgaagc atcttcctgc agcggccaaa
      541 gtttgtcggt atcaatggag atggccactg ggattcctgc cggtactggt tggtgatgca
      601 ggcaggtaaa tgtgccgcca cctgcttcga gggtgacccg gtaggccggg ccggtgaaga
      661 cacagcgggt aggggtggcc attaactgct tatgattgtc gccaatgaaa atgtgttctt
      721 cacgaagcat gaacatcttt gccaactttt cggaaaaccc gggatatcca tttgctacca
      781 gccatgaagc actcacggta ttgaagggac caaacagacc ggccacataa ctgttgaccg
      841 gcttaaggta aatgtcttcc ggcgatgctt gttgcagtac gccgccgttt cgcatcacca
      901 ttattttatc cgcccaactc agcatatcct gcggatcgtg tgacaccagt atcatgctta
      961 ccgggtatgc ctgcccgatg ttgtaaagca cctgtttgat atggcttttg tgaatgctgt
     1021 caagattgga gaacggttca tccagtaaga gcagccgggg cttggtggcc agcagtttgg
     1081 ccagggctat cctttgtctt tcgccgccac ttaagccgct gttggttttt cgctgcagca
     1141 aatggtcgat ttcacaaaca cggaatagtt gttcggcttc ggcctggctc atttcactgc
     1201 cgtaatcgag caggtcgtac acaatgtagt tgttcctgag ttcgtaatgc tggctgaggt
     1261 aggcgatgcc cggatgcccg ggtatgagtt tttcgagtgg cccttctacc cgtttgtggg
     1321 caaaagaaat ggagcctgca gcgggctgca gcaaaccggc tatcagtttg agcagtgtgc
     1381 tcttgccgga accggtttcg ccggcaatca ccagtttttc attgcctgta agagaaaacg
     1441 aaaccggggc cagttcaaag tggcctggca agttgaagct aacctggtcc acttgaagca
     1501 atatgttgtc agcaggcata aaattccggg tatcccggcg aatgtaactc ttacagggca
     1561 aaggcttttg atagcgatgc cgatgtggtt attctgccgg agcgcacaat catttactgc
     1621 ttttgaaaaa cccagcggca ataaatcaat ttccgttctt ttagttgtaa atggatttgg
     1681 cttccggcta ccccggcaaa ctcgccaaac atcttatgat acctggcagg aacggcttct
     1741 ttaatctggt tccacttatt tgtttcatcc agttcgatag ccgccaccac ctgctcggtt
     1801 atatcatctt caaaaatttt gttcatgcca gcggaattca gttcggcatt gagtttttcc
     1861 aatcccggca caccccgcat atcggtaata cacaagtatc ctccaggtcg aagcactcgt
     1921 tttacttcag ccaggaattt agaaacagaa ccataagcat ggcaactttc cacattgatg
     1981 acaacatcaa aactgttgtc ggcaaaaggc aggttctccg cattgccctg cacatatttc
     2041 aagttgggtg catggtgtac ccggttggaa aaatctacag cattttgcgc caggtccatg
     2101 cctatcattg agtgaggcga atggtattgg gcaatgtacc tggatccgcc gccacgacca
     2161 ctgcccactt ccagcaagtc tttgccggca acaggaactt tcgtggcaag ataatggtaa
     2221 agctgcaagg ggtatcggtg gtaaacttct tgcggcggaa gttcgagggg gggctctgta
     2281 tctgacggcg tatagccgta attcatgaaa tgccaattgg aaacggggta tttcctggca
     2341 agggtttcat aaatgggttt ccaaaccaat ctgcgaaacc atgggtattc agtaagttca
     2401 agaaacagcc aggatagcat ggtaaatact ttgtccttaa aaatagggga gtttcattaa
     2461 taagcattgg gttacttttt ctgggaatct tggtcatgca aagtttcgat taattggcac
     2521 ctgccgtgat gcgacaggga tgacaggagc tctattttag atgaactgga acaataaaaa
     2581 aatcctgcca ccttacggca gcaggatttc cttttaacgt gcgatcggat tattctcctc
     2641 ttgcaggcat caggcgccaa attgcttacg gatgatattc aatgccgcac cggccttgaa
     2701 ccactcaatc tgctgttcat tgtaagtgtg gtttacgctg atctcatctt tgctgccatc
     2761 ggcatggttg agcacaaggg tgagcggctt gccgggggca aactcggtaa gacccattat
     2821 gtcaatgctg tcgtcttcct ggatcttatc gtaatcggct ttgtcggcaa aagtgagtgc
     2881 cagcatgccc tgctttttca agttggtttc gtgtatacgg gcaaaactct ttaccaaaac
     2941 agcacgaaca ccaaggtggc gcggttccat tgcggcatgt tcacgagatg aaccttcgcc
     3001 atagttttca tcacctacta caatgctgcc aacgccagcg gctttgtagg cccgctgtgt
     3061 agctggcaca ggtccgtatg caccagtcag ctggttcttt acgctgtctg tcttttcatt
     3121 gaagtagttc acagcaccaa tcaacatgtt gttgctgatg ttgtcgaggt gaccgcggaa
     3181 cttcaaccag ggtcctgcca tgctgatatg gtcagtcgta cacttgcctt ttgccttgat
     3241 caacagcttc aagcctttca ggtcggtacc ttcccaggcg gcaaagggat caagcagttg
     3301 caggcgattg ctggtagggc taacggctac agtaacaccg ctgccatctt ctgcaggagc
     3361 ctgataacca gcgtcttcaa ctgcgaaacc tctaacagga agttcatctc cggaaggagg
     3421 gtccagcttc acctgttcgc ccttttcgtt ggtgagggta tccgtgatcg ggttgaaagt
     3481 caggtcgccg gcaatggcca gggcagttac cagttcaggg ctggccacaa aggccattgt
     3541 attggggttg ccatcggcac gcttggcaaa gttgcggttg aagctgtgca cgatggtgtt
     3601 cctttcctgc ttttcggcac ccatacgatc ccacatcccg atgcaaggac cgcaggcgtt
     3661 ggcaaatacc ttggcgccaa tttgggcgaa agtatccagg aaaccatccc tttctatcgt
     3721 gtaacgaacc tgctcagagc cgggagttat cgtgaattct gccttggttt tcaatccttt
     3781 ctgcgctact tgtttagcaa gacttacagc ccggctgatg tcttcataag aagagttggt
     3841 acagctgcca atcaaaccta cttccacttt ggtaggccag ttattggcgg cggcggcctc
     3901 cttcattttg ctgataggcg tggccaggtc cggggtgaaa gggccgttca ggtgcggctc
     3961 cagttcgctg aggttgattt cgattacctg gtcgaagtat tgctcggggt tggcatacac
     4021 ttccgcatcg ccagtcaggt gctcggcgat gccatcagcc agggcagcca cttcttcgcg
     4081 gccggtggct ttcaggtagc gactcatgct ttcgtcgtag ccaaatgtgg aggtggtggc
     4141 gccaatttcg gcacccatat tacaaatggt tcccttacct gtacaactca tggcagtggc
     4201 gccttcgcca aaatattcca ctacagc
//
LOCUS       DATIQF010000786         3695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_194880,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000786 DATIQF010000000
VERSION     DATIQF010000786.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3695
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194880"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1921)
                     /locus_tag="VLL95_13560"
     CDS             complement(<1..1921)
                     /locus_tag="VLL95_13560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39935.1"
                     /translation="MKQSLYKALNIHEEEAPLVFRLLLLQFSLGLATSFLVTASYSFL
                     LTKYNIQQVPLVYVVVALIMFPANGIYVRLDLKLSARKLLELVIGIAVFSIPVLVSVW
                     QVTQAPWMPMLIVAWNVSLYMLVGYAYWGMASLLFNVRESRRIFSVIGSGDLPAKIIG
                     YLAISVFAPKVGIESTMLFSLVFYALAFFITRHYFATGKIDWENFESHQHTHTHEHHD
                     KWWMRIFESSLIMRIAMLSMLAYAVTHLSEFTFISEIKGRYDSSSDIMKFISTFLALG
                     RMLALVMKLLLSSRIINGLGLTRSLVSTPAFILLMAVTIIILSVFGNQAQLNLYGFGV
                     LFIVSELLRSVIQEPTFFILFQPLNIHLRLKGHVVAKGYVYPPVLFVLGIALWWWMNQ
                     YHAVSIPLVLGIIIAIGVLWIFIIPFIAKAYQKAVEGSIKKGFFSGVSLFLQNDKVEK
                     LLLEKVAFGKEDERIHALHLLQKSDYAGMEKLVMAMFPTASHNTKLQLIGIIADKNYK
                     AAIPMLHQIQQSEQPSSIETAVFATLCKIDPDFLQQTIQRFSALPVQQKRAMLEAFPQ
                     QYHILPQHHFDEMLTAATENETAAANLMAVLEFGPKEWQQKVFQTLFHLPLSVPVRCM
                     LIRMTGKLELTEYLPQ"
     gene            complement(2089..>3695)
                     /locus_tag="VLL95_13565"
     CDS             complement(2089..>3695)
                     /locus_tag="VLL95_13565"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR39936.1"
                     /translation="TGSVANGFESIAGQINVEMKKPENAERLYANVYVNSMGKTDLNL
                     NLTQKVGKQWSTALLLHNAFLYNKMDFNDDGYRDLPTGNLFTAMNRWKYEGLNGWMTQ
                     FGFKILTDRKTGGENSFDPNQHKGSTDIYGLGINTNRYEGFAKIGYVFPEKKYQSIGL
                     QLSGFNHQQNSYFGLTNWDATQRNFYSNLIYQSIINNTAHKFRTGLSLVSDQYRETLN
                     QRAFNRNEVVPGAFFEYTYDYLTKFTVVAGMRVDHNSIYGWFATPRLHVRYAPFTNTS
                     IRLSVGRGQRTANIIAENSSVLVSARQFEIVGAQDGKAYGLDQEVAWNKGISIDQKFK
                     MFGRDANISADYFRNDFNNQVVVDMEDPRKTSFYNLDGKSYSNSFQVEWHASPIYKLD
                     VRLAYRLFDVNTTFDGVLLQKPLLSRHRGFLNLAYETGGWKFDYTLNYNGTKRVPSTA
                     SNPPDLVQPTASPTYFLMNAQISKTLGKVHPVEVYLGGENLGNFIQQVNIIDPRNPFG
                     SYFDASLVWGPVTGRMIYAGFRFKLK"
BASE COUNT          908 a          885 c          954 g          948 t
ORIGIN      
        1 cctggggcag gtattctgtc agctccagct ttccagtcat tcttatgagc atgcaacgaa
       61 caggcaccga cagcggcaga tgaaacaagg tctgaaacac tttttgctgc cattctttgg
      121 ggccaaattc cagcacagcc atcaggtttg ctgcggctgt ttcattttcg gtggctgccg
      181 tcagcatttc atcaaaatgg tgctgcggca ggatatgata ttgttgtggg aaggcctcca
      241 gcatggcacg cttttgctgc accggcaatg ctgaaaatct ttgaatggtt tgctgcagaa
      301 aatcaggatc gattttgcag agcgtggcaa atacagcggt ttcaatggag gagggttgtt
      361 ccgactgttg tatttggtga agcattggaa tggccgcctt ataattcttg tcggctatga
      421 tgccaatcag ctgcaacttg gtgttgtgcg aggccgttgg aaacatggcc attaccaatt
      481 tttccatgcc ggcatagtcc gatttctgca gcaggtgcaa tgcatgtatg cgttcgtcct
      541 cctttccaaa ggccactttc tccagcaata gtttttccac cttgtcattt tgcagaaaaa
      601 gcgatacgcc actgaaaaat ccttttttga tggaaccttc caccgccttc tggtatgctt
      661 ttgcaataaa tggaatgatg aagatccaga gcactccaat ggcaatgata atgcccagca
      721 ccaacggaat ggaaacggca tgatattgat tcatccacca ccacaaggcg atacccagca
      781 cgaagagaac cggcgggtac acatagcctt tggctaccac gtgtcccttc aggcgcaggt
      841 gaatattgag cggttggaaa agaatgaaaa aggtaggctc ctggatcacg gaacgcagca
      901 gttcgcttac gataaaaagc actccaaatc catacaggtt cagctgggcc tggttgccaa
      961 aaacactgag gataatgatg gttactgcca tcagcaggat aaaagccggt gtagaaacca
     1021 ggctcctggt cagccccagt ccattgatga tgcgactgct cagcaataat ttcatcacca
     1081 gtgccagcat ccggccgagg gccaggaagg tggaaatgaa tttcatgatg tcggatgaag
     1141 aatcgtaccg cccttttatt tcgctgatga aggtgaattc actgaggtgc gttaccgcat
     1201 aggccagcat ggaaagcatg gcaatacgca tgatgagcga tgattcaaaa atgcgcatcc
     1261 accatttgtc gtggtgctca tgcgtatgcg tatgctggtg gctttcaaaa ttttcccagt
     1321 ctattttccc ggtggcaaaa tagtggcggg tgatgaagaa ggccaaagcg taaaacacaa
     1381 ggctgaagag catggtgctt tcaatgccca ccttgggagc aaaaacggaa atggccaggt
     1441 agccaatgat cttggcaggc agatcgccgg aaccaattac ggaaaatatt cttcggctct
     1501 cccgcacatt gaaaagaagg gaagccatgc cccagtaagc atagcctacc aacatgtaca
     1561 gcgatacgtt ccatgccact atcaacatgg gcatccatgg ggcctgtgtt acctgccaaa
     1621 ccgataccaa aacagggatg ctgaataccg caatccctat gaccagttca agcagtttgc
     1681 gggccgacaa cttaagatcc agccttacgt aaatgccatt ggccggaaac atgatgagcg
     1741 ccactaccac atacaccaat ggcacctgtt gaatattgta cttggtcaag aggaaggagt
     1801 aggaggccgt aaccagaaag gaggtggcca gacccagtga aaactgaagc agcagcagcc
     1861 tgaataccaa tggggcttct tcttcatgaa tattcagggc tttgtacagg ctttgcttca
     1921 tagattaatc caggaaaagt ggggggtgaa gttcaaggcg tgaaattaag gccttcactc
     1981 gtatgaatct ttggtaatgg cacccttggt catttgttgt ttctggtttg catggtccac
     2041 aaaaaaagga tgcgtttcaa tgtcatcctt ttcctgtcat gggtgcggtt acttcaactt
     2101 gaaccggaat ccggcataga tcatacgccc ggtaaccggt ccccagacca gcgaagcatc
     2161 gaaatagctg ccaaacgggt tgcgggggtc aatgatgttt acctgctgaa tgaaattgcc
     2221 caggttctct ccgcccaaat acacttccac cgggtgcact ttacccaggg tcttgctgat
     2281 ctgggcattc atgagaaaat aagtaggtga agccgtgggt tgcaccaggt cgggtggatt
     2341 ggacgccgtg gatggcaccc gcttggtacc gttgtagttc agcgtgtagt caaatttcca
     2401 gcctcctgtt tcataggcca ggttcaggaa accccggtgg cggctcagca gcggcttctg
     2461 cagcagtacc ccatcgaaag tggtattcac atcaaacaag cggtaggcca gtctcacatc
     2521 cagtttgtaa atgggtgaag catgccattc cacctggaaa ctgttggaat aagattttcc
     2581 gtccaggttg taaaaactgg ttttgcgggg atcttccata tccaccacca cctggttgtt
     2641 gaaatcgttg cggaaataat cggcgctgat gttggcgtcg cggccaaaca ttttgaattt
     2701 ctgatcgatg ctgatgcctt tgttccacgc cacttcctgg tcaagaccat aggccttgcc
     2761 atcctgggca cccacaattt caaactggcg ggcactcacc agtacgctgc tgttttcagc
     2821 aatgatgttg gcagtgcgtt gcccacgtcc tacactcagc ctgatggagg tattggtgaa
     2881 tggagcatac cggacatgca ggcgtggtgt ggcaaaccag ccataaatgc tgttgtgatc
     2941 tacacgcata ccagccacca ctgtgaattt ggtcaggtag tcgtaggtat actcgaagaa
     3001 ggcgccgggc accacttcat tcctgttgaa tgcccgctgg ttcagggttt cgcggtattg
     3061 gtcgcttacc aggctaaggc ctgtcctgaa tttgtgggca gtgttgttga tgatggattg
     3121 atagatcagg ttgctgtaaa agttgcgttg cgtggcatcc cagttggtaa gaccaaagta
     3181 ggagttttgc tggtggttga aacccgacag ttgcaggcca atgctctggt atttcttttc
     3241 cgggaataca tagccgattt tcgcaaagcc ttcgtagcgg ttggtattga tccccaaacc
     3301 gtatatatcg gtactgcctt tgtgctggtt ggggtcaaat gagttctcgc cccctgtttt
     3361 tcggtcggtg agaattttga agccaaactg cgtcatccac ccgttgaggc cttcatactt
     3421 ccaccggttc atggcggtga acaaattacc ggtgggcaaa tcgcggtaac catcgtcatt
     3481 gaagtccatc ttgttgtaga ggaaggcgtt gtgcagcagc agggcggtgc tccattgctt
     3541 gcccaccttt tgcgtaaggt tcaggttgag atcggttttg cccatgctgt ttacgtacac
     3601 gttggcatac aggcgttccg cattctccgg ctttttcatt tctacgttga tctgtccggc
     3661 aatgctttca aaaccattcg ctacgcttcc ggtac
//
LOCUS       DATIQF010000787         2908 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_210388,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000787 DATIQF010000000
VERSION     DATIQF010000787.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2908
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210388"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..525
                     /gene="fabZ"
                     /locus_tag="VLL95_13570"
     CDS             <1..525
                     /gene="fabZ"
                     /locus_tag="VLL95_13570"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: protein motif:HMM:NF000582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HSR39937.1"
                     /translation="ANVEFAKLVKQYIKKNKHTKDVPTYDPALPPVYDLAGIEKTLPH
                     RFPFLLVDKIIELTSTSIVGVKNVTFNEWYFQGHFPNNPVMPGVLQIEALAQTGGILC
                     INAMPEGQYDTYFLKIENCKFKAMVKPGDTMLLKLELLEPIRRGICMMRGTVFVGNKV
                     CTEAEMVAQLVKRS"
     gene            671..1465
                     /gene="lpxA"
                     /locus_tag="VLL95_13575"
     CDS             671..1465
                     /gene="lpxA"
                     /locus_tag="VLL95_13575"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: protein motif:HMM:NF003657.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HSR39938.1"
                     /translation="MIHPLAYIHPDARLADNVKVDPFTVIHGNVSIGEGTWIGSNVTI
                     MEGARIGKNCRIFPGAVIAAIPQDLKFQGEKTTVEVGDNCTIREFVTINRGTVDRGKT
                     QVGNNCLIMAYSHIAHDCVIGNNCIMSNNTQMAGHVTMGDWAVVGGVSAIHQYVKIGQ
                     HAFVSGGSLVGKDVPPYIKAGRTPLSYAGVNSVGLKRRGFSNQQINQILDVYRCIYNK
                     GMNTTQALEYIEEELPITDERDEILTFIRDSGRGIIKRFTKGALDD"
     gene            1512..2135
                     /locus_tag="VLL95_13580"
     CDS             1512..2135
                     /locus_tag="VLL95_13580"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR39939.1"
                     /translation="MYIRLQQLGKRYNRHWVFRKLDAELRAGQSVAITGPNGSGKSTL
                     LQVIAGALQPSEGTMTWAGTEGEDIPAENHFKSVSVCAPYLELIEELTLAEFLRFHEK
                     FKTWLPGLSLEKAIELTGLQEARNKQIRDFSSGMKQRVKLAQAILSNSPVLLLDEPTS
                     NLDQKGIEMYHRWMQEFAKGRLVVIASNDETEIGFCQQRIHITDHKN"
     gene            2143..2478
                     /locus_tag="VLL95_13585"
     CDS             2143..2478
                     /locus_tag="VLL95_13585"
                     /inference="COORDINATES: protein motif:HMM:NF024375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSR39940.1"
                     /translation="MPEGFFHSLADIQIKEIAPGFLSKLVHTSGNTINFIEVKAGNAV
                     PLHTHMHEQSSFVLEGQFEMTIAGETQVLEPGTYCIIPSMVQHGGKAITDCKLLDIFN
                     PVREDYRAL"
     gene            2532..2840
                     /locus_tag="VLL95_13590"
     CDS             2532..2840
                     /locus_tag="VLL95_13590"
                     /inference="COORDINATES: protein motif:HMM:NF012305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39941.1"
                     /translation="MNLFVAGLPYDVDNAELEEIFEKFGPVRSAKVAMDKETGKSRGF
                     GFVDMQNAEDGRQAIDFLNGIQLGRNAKALTVKEADDRSSGGGNSGGGYRGSGRGGYR
                     "
BASE COUNT          798 a          687 c          740 g          683 t
ORIGIN      
        1 gccaatgtgg agtttgccaa actggtaaag caatacatca agaaaaacaa acacaccaaa
       61 gacgtaccca cttacgatcc ggccctgcct ccggtgtacg acctggccgg cattgaaaaa
      121 acactgcctc accgtttccc attcctcctg gtcgacaaga tcattgaact tacaagcacg
      181 tccattgtgg gcgtgaaaaa cgtgaccttc aatgagtggt atttccaagg gcactttcct
      241 aacaacccgg tgatgccggg ggtactccaa atagaagcgc tggcgcaaac tggcggcatc
      301 ctttgtatca atgccatgcc ggaaggtcaa tacgacacct atttcctgaa aattgaaaat
      361 tgcaagttca aggccatggt aaaacccggt gataccatgc tcctgaaact ggaattgctg
      421 gagcccatcc gcaggggaat atgcatgatg cggggaaccg tatttgtagg gaacaaagta
      481 tgcaccgagg cggaaatggt ggcccaattg gtgaagcgtt cctgatgcaa ggaggccacc
      541 tgttcattgt taaaaaagtt tacgtatcgc cgggtgtgct atttttgctg caatctttta
      601 atcacagcca taataagcgg ttgaaaaata atgacttata aaatttcgac tgcttgacac
      661 aaaccacctt atgatccatc ccctagccta tatccatccc gatgcccgcc tggctgacaa
      721 tgtgaaagtg gacccgttca ccgtcatcca tggcaatgtt tccataggcg aaggcacctg
      781 gattggcagc aatgtaacca tcatggaggg tgcccggatc ggcaaaaact gccgcatttt
      841 ccccggcgcc gtgattgccg ccattccgca ggacctgaaa ttccagggtg aaaaaaccac
      901 tgtggaagtg ggtgacaact gcaccattcg tgagtttgtg accatcaatc gtggtacggt
      961 tgaccggggc aaaacacagg tgggcaacaa ttgtctcatt atggcctaca gccatattgc
     1021 ccacgattgc gtgatcggca acaactgcat catgagcaac aatacccaga tggcaggcca
     1081 tgtcaccatg ggcgattggg cagtggttgg tggcgttagt gccattcacc agtatgtaaa
     1141 aattggtcag catgcctttg tttccggcgg ttcgctggtt ggcaaagacg tgccccctta
     1201 tatcaaagcc ggccgcaccc ctttgagcta tgcgggtgta aactcggtag ggttgaaacg
     1261 caggggtttc agcaatcagc agatcaatca aatcctggat gtgtaccgtt gtatctacaa
     1321 taagggcatg aacaccaccc aggcgctgga gtatattgaa gaagagctgc ctatcactga
     1381 cgaacgggat gaaatactca ctttcatccg ggacagcggc aggggcatta tcaagcgttt
     1441 tacaaaagga gcgctagacg attaaaataa aatttgatcc tccggtgccg gaggattttt
     1501 tttgtgctgt tatgtatatc aggctgcaac aattgggcaa gcgctacaac cgtcactggg
     1561 ttttccgcaa actggatgcg gaactgcgtg ccgggcaatc agtagccatc accggcccca
     1621 acggctcggg caaaagcacg ttgttgcaag taatagccgg cgcattgcaa cccagtgaag
     1681 gaaccatgac ttgggcagga actgagggcg aggacatacc agcagaaaat cattttaaaa
     1741 gcgtgtccgt ctgtgctcct tatcttgaat tgatagaaga gctcaccctg gcggagtttc
     1801 ttcgttttca tgaaaaattc aagacctggc tgccgggtct ttcactggag aaggccattg
     1861 aactgaccgg tttgcaggaa gcccggaaca agcagatccg cgacttcagc agcggcatga
     1921 agcagcgggt aaaactggca caggctattc tgagcaattc cccggtgctg ttgctggacg
     1981 aaccaacctc caacctcgat cagaaaggca tcgaaatgta tcatcgatgg atgcaggaat
     2041 ttgccaaggg aaggctggtg gtgattgcca gtaacgatga aacggaaatt ggtttctgcc
     2101 agcagcgtat tcacattaca gaccataaaa attaatcata ccatgcctga aggatttttt
     2161 cactccctgg cagatattca gatcaaggaa atcgccccgg gctttttatc aaaactggta
     2221 catacctcgg gcaataccat taattttatt gaggtaaaag ctggaaatgc cgtgccgctt
     2281 catacgcata tgcatgagca aagctctttt gtattggagg gccagtttga aatgacaata
     2341 gcgggtgaaa cacaggtact ggagcccgga acctattgca tcattccatc catggttcag
     2401 catggcggca aagcgattac cgattgcaaa ctgctcgata ttttcaaccc ggtaagggaa
     2461 gattaccggg cattgtaaaa acaattaatt ctctttattt caggctcacc agtctgttca
     2521 atctccttct tatgaaccta tttgttgctg gtcttcccta tgatgttgac aacgcggaac
     2581 tggaagaaat ttttgaaaaa ttcggaccgg taagatccgc caaagtggct atggataaag
     2641 aaaccgggaa aagccgcggc tttggttttg tagatatgca gaacgcagag gacggtaggc
     2701 aggcaattga cttcttgaat ggcattcaac tgggccgcaa tgcaaaagcg ctgacggtaa
     2761 aagaggctga tgatcgttca tccggtggcg gcaatagtgg cggtggctac cgcggcagcg
     2821 gaagaggcgg gtaccgctaa tatcggtgca atgccattct acttttgcga agcttaccaa
     2881 gtacttggga gaggagaaaa tcaacggc
//
LOCUS       DATIQF010000788         4818 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_42762, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000788 DATIQF010000000
VERSION     DATIQF010000788.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4818
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42762"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(301..1008)
                     /locus_tag="VLL95_13595"
     CDS             complement(301..1008)
                     /locus_tag="VLL95_13595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39942.1"
                     /translation="MGGASPTGVAIYGFSASGGTALRGVSPTGYALNTSGNVRISGGN
                     TNPSEGAVLTSVDASGNAVWVNNPKVAFKVTGVSSGHEDLPENSARRIQYGTESFDLS
                     NNYALLTSGATPTSNSSVFTAPVDGIYHFDVGCRIMQNNANNFLNDIEYGTLSLMRNR
                     NGVETTLIWVSGKRTFRVVGGAEVSDNASFNISVAESLQAGDRIYVNIIQSSGTEVVI
                     NGGVNNWFSGVLVTPLQ"
     gene            complement(1057..1467)
                     /locus_tag="VLL95_13600"
     CDS             complement(1057..1467)
                     /locus_tag="VLL95_13600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39943.1"
                     /translation="MKHLIYLLTLINIGSSLQAQNNIGIGTQAPHNSSVLDISSTTRG
                     LLAPRMTTAQRNAIASPAKGLLVYDTDLNGLYHYNGSAWASIAGGGFALPFAESVAHS
                     GPVFSISNSGTGSAISGTSSNNSTAAIQGTTNGV"
     gene            complement(1702..2685)
                     /locus_tag="VLL95_13605"
     CDS             complement(1702..2685)
                     /locus_tag="VLL95_13605"
                     /inference="COORDINATES: protein motif:HMM:NF025253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098024 - virus tail, fiber [Evidence
                     IEA];
                     GO_process: GO:0019062 - virion attachment to host cell
                     [Evidence IEA];
                     GO_process: GO:0046718 - viral entry into host cell
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber domain-containing protein"
                     /protein_id="HSR39944.1"
                     /translation="MKNLLSLIPLLVFADLLLAQNVGIGTNTPNYPLTVIANGNGRGF
                     VQKMDLVEMGIYPFSFTGLGKGATIGTLTDNPVGISVGNKNPAIVIIPDGRVSVGPGA
                     TSNISPYDFAVFGSSGLYGSLYVGGEMEVKNNVGFGVSNPAYRLDIAGRIRIRSGGTS
                     STSAGIWLNKIDNSGLLGFVGVDGNNDIGIYSNTSGWSFLVDDATGNVTVKGTVKANG
                     VTLTSDERLKKDITPLDEAMPLLEKLNGYQYHWKDASWDASLQTGLLAQEVEKVLPEL
                     VKTDDKGMKSVNYLGLIPYMLEAVKEQQAVNITQQKQIEELKKLVTELLKK"
     gene            3077..3484
                     /locus_tag="VLL95_13610"
     CDS             3077..3484
                     /locus_tag="VLL95_13610"
                     /inference="COORDINATES: protein motif:HMM:NF019135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HSR39945.1"
                     /translation="MAILFCIQALLNGLPPAHGQASPFLFHHLGNLNENGINFVSDIL
                     FDSKKRVWLAAQSGFYRYDGQHYIPYRKTKDSSSIPDNFVHALCEDRQGNIWGGTEAG
                     IFRFNPSTQQFKQYLTPDAYSDQGVNNICIDAN"
     gene            3611..>4818
                     /locus_tag="VLL95_13615"
     CDS             3611..>4818
                     /locus_tag="VLL95_13615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39946.1"
                     /translation="MLPSPDGKHLWLATRQGLWAYHIASNTLLNPVTQPRNPFFANVN
                     TSALTESAGGMFLYFDNTHKDIVQFDPARMTITKRISLARAMPEAAGATLFEAKDGSI
                     WFCSWSNQVLLIDQRNNNRIYDLNGKLDEPLGLLSNYFWQARQDEDGSVWLATPEGVF
                     VCNEPKNLFKIHRLNTVIKELNPQVFIDVFAENPNDQTWWMTTSGNRGIHFITPKQQS
                     NPPKTKTLSHVIIHYDPRLGSYETIDYSNAPPNKWGLRPNGINHISFFDHNPVIITYN
                     GAWLWQATTKQWQTLETATGIHFPFNISGMVGDDKQGYYISDYQQLAYYNYTQKTVQN
                     IVISGAKPSAINVLKLFPRQQFKPNIYGSIGVTGLLKLQSDSAYFIPLVQNIRIDNIG
                     YIDDIDVDSRG"
BASE COUNT         1325 a         1198 c         1052 g         1243 t
ORIGIN      
        1 ccaggtgttt catgcgtttt cactttagga gccttaaaaa tccgcagccg gcggggcgtt
       61 ttaaaacttg aaatggtgat atgcagaaaa caattgtcag catgtagaat agatctgttt
      121 aaatgcaagc agataggtat cgaaatgcga agagaatatg gatgattctc acagcagctg
      181 tcagaaaggc ccaaagaaaa cgcccctgga aaggaggcgt tttgtaatca ggtcctgaca
      241 attcagaaat actttatcag agattactta attagctgag gagggttaga agcttctcgc
      301 ttattgcagg ggcgtaacca gtactccact gaaccaattg tttactcctc cattgatgac
      361 aacttcggtt ccggatgatt gaattatatt gacataaatc ctgtcgccag cttgtaatga
      421 ttctgcaacc gaaatgttga aggaagcatt gtcggatact tctgcgccac ccacaactct
      481 aaatgttctt ttaccactaa cccaaataag ggtcgtttca acaccattgc gatttcgcat
      541 taatgacaat gttccatatt caatatcatt caaaaaatta tttgcattat tctgcatgat
      601 tctgcaccca acatcaaaat ggtaaatacc atcaacagga gctgtaaata cactactgtt
      661 tgaagtagga gtagcccccg atgtcagcaa tgcgtaattg tttgaaaggt cgaaggactc
      721 tgttccgtat tgaatacgcc ttgcagaatt ttctggaaga tcctcatgtc cggatgaaac
      781 gccggttacc ttaaaagcca ctttcggatt atttacccat accgcgttgc cgctggcatc
      841 cacactggta agcacagcgc cttccgaagg attagtatta cctcccgaaa ttcgcacatt
      901 accgctggta ttgagtgcat atcccgtggg agaaactcct ctcagggcgg taccgccgct
      961 tgcactgaaa ccgtatatgg ctacaccggt agggctggca ccacccacgc caaagctgcc
     1021 ggcagtggtt ccaaggccaa aaataccata cccaccctaa actccgttgg ttgtaccttg
     1081 aatagctgcc gtactattgt tggaggaagt gccagatatt gcagaaccag ttccggaatt
     1141 agaaatacta aaaaccggtc cggaatgggc cacactttcc gcaaaaggta aggcaaagcc
     1201 gccaccagct attgaagccc atgccgagcc attataatgg tagaggccgt tcagatcggt
     1261 atcatatacc aacaacccct tagccggcga ggctatcgcg ttgcgctgtg ccgtagtcat
     1321 tcggggcgct agcaatcccc tggtggtgct gcttatgtca agtacagaac tgttgtgcgg
     1381 cgcttgtgtg ccaatgccta tgttgttttg cgcctgtagg ctgctgccaa tattaatcag
     1441 cgtgagtaaa tagatcaggt gtttcattca ttttcgcttt tggagccata aaattctaca
     1501 gccgccgggg cgttttaaaa cttgaaaagg tgatatgcag aaaacagttg tcagcatgta
     1561 gaatagctct gtttaaatgc aaacagacgg gtgtcaaaat gtaaagagta agaggagtga
     1621 tgcaagccac atgtgtcata caggaccaaa caaaacgccc cctgtaaagg aggcgcttga
     1681 ttttggtaaa tagtgggtgt gttatttttt gagaagctca gtcaccagtt ttttcaattc
     1741 ttcaatttgc ttctgctggg taatgttaac tgcttgttgt tctttaaccg cctccagcat
     1801 atacggtata aggcccaagt agtttacgct cttcataccc ttatcgtccg tctttaccag
     1861 ttcaggcagc actttttcca cctcctgtgc cagcagaccg gtttgcaggc tggcatccca
     1921 cgatgcatct ttccaatggt attggtagcc attcaacttt tccagcaatg gcatagcctc
     1981 atccaagggg gtaatatcct ttttcagtcg ctcatcgctg gtaagcgtaa cgccgttggc
     2041 tttcacagta cctttcacgg ttacgttgcc ggtagcatcg tccaccaaaa aactccagcc
     2101 actcgtattg ctgtagatcc caatgtcatt gttgccatct actcctacaa aacccagcaa
     2161 accgctgttg tcaattttgt tgagccagat gcctgcactg gtgctgctag tgccgccgct
     2221 gcggatgcga atacggccgg caatgtccag gcggtaagcg gggttggaca caccaaagcc
     2281 cacattgttt ttcacttcca tttctccacc cacgtaaaga gaaccataca aacctgagga
     2341 accgaataca gcaaaatcat agggggagat attggaagtt gctcctggcc ctactgaaac
     2401 tctgccatcc ggtataatga caattgcagg gtttttattt cctacagaaa taccaacagg
     2461 gttatctgtt aacgtaccga tggtagcccc tttacccaat ccggtaaaag aaaatggata
     2521 aatacccatt tctactaaat ccatcttctg aacaaatccc ctcccgttac cgttcgcaat
     2581 taccgttagg gggtaattgg gtgtattggt accaatgccc acattttggg ccaatagcaa
     2641 atcagcaaaa accaacagtg ggataagtga caataggttt ttcatggtaa ccaatttgcc
     2701 cctaaaactc tttcagcaga aaaagctttc gaaatgtaag taaatgacct gccgaaaaat
     2761 gcaggtcaaa tgcgctttgt gccgtgtaaa atgcaaaacg gaacgccgca tcagcagcat
     2821 tgggaacagc cattaccagt gaattaccgg tgaatgcgcc ctgcattcac gtactcatgt
     2881 gggccgatgg atattttgta tggtgaccgc atccaactgg cccgggcata cagttcagac
     2941 ttcatttccg tcattttgcc ttcataaaat tccctttacc caacaggttc acttagtttg
     3001 ctacaccaac aggaattgcc gggaacttta cccgtgccat ctttgagagg atattcgaac
     3061 catgaggcat ctgatattgg ccatactatt ttgcatacag gctttgctca acggcctgcc
     3121 gcctgcccat ggccaggcct cgcctttcct gtttcaccac ctcggcaacc tcaacgagaa
     3181 cggcattaat ttcgtcagcg acatcctgtt tgactcaaag aagcgggtat ggctggctgc
     3241 acaatccggc ttttaccggt acgatggcca gcattacata ccctatcgca aaaccaaaga
     3301 cagcagttcc attcccgaca acttcgttca tgccttgtgc gaagacaggc agggcaatat
     3361 ttggggcggt actgaagcag gcatcttccg tttcaatccc tccacccagc agttcaaaca
     3421 atacctgacg cccgatgctt attcggacca gggggtaaac aatatttgca tcgatgccaa
     3481 ttgaagactg tgggctgcta ccacctatca actgctttta tacaatgtcg ctgccgattc
     3541 atttgaatca cgtcttgatg taaaagccgg caccaatggc cagcctgtaa acgacatcag
     3601 aaagcggggc atgcttcctt cgccagatgg taagcatctg tggctggcaa ccaggcaggg
     3661 tctttgggca taccatattg ccagcaatac tttactcaac cctgtcaccc aaccacgaaa
     3721 tccttttttt gccaatgtaa atacctcggc gcttactgaa agcgcaggtg gcatgttcct
     3781 gtatttcgac aatacccata aggacattgt acaattcgat ccggcaagga tgacgatcac
     3841 caagcgcatc tcccttgccc gggccatgcc cgaagcggca ggggccacgc tgtttgaagc
     3901 caaagatggc agcatttggt tttgcagttg gtcgaaccag gtattgctga tagaccagcg
     3961 aaacaataac cgcatttatg atttgaacgg caaactggat gaaccgcttg gattgctgtc
     4021 caactatttc tggcaggccc ggcaggatga agatggcagc gtttggctgg ccacccccga
     4081 aggcgttttt gtttgcaatg aaccaaagaa cctgttcaaa atacaccggc tcaatacggt
     4141 gatcaaggaa ctgaatcccc aggtttttat tgatgtattt gccgaaaacc ccaatgacca
     4201 aacctggtgg atgacaacat caggcaatag gggtattcat ttcattacgc caaaacaaca
     4261 aagtaatccg cccaaaacaa agacattgtc ccatgtcatt atccattatg atccacggtt
     4321 ggggagttat gagaccattg actatagcaa cgcgccgcca aataagtggg gactacgacc
     4381 taatggaatt aatcatatca gctttttcga ccacaacccg gtaatcatta cctacaacgg
     4441 cgcatggctg tggcaagcca ccaccaaaca atggcaaact ctggaaacgg caaccggcat
     4501 ccatttccca ttcaacataa gtggaatggt gggcgatgat aaacaaggat actatatctc
     4561 cgactaccaa cagctggctt actacaacta tacccaaaaa accgttcaga acattgttat
     4621 ttctggtgca aaaccctccg ctattaacgt cttaaaactc ttcccacgtc agcaattcaa
     4681 gcccaacata tatggttcaa taggtgtgac gggtctgttg aaactgcaat ctgattcggc
     4741 ctactttata ccactcgttc aaaatatcag gatcgataat atcggctata tcgatgatat
     4801 tgatgtggac agccgggg
//
LOCUS       DATIQF010000789         3317 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_12533, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000789 DATIQF010000000
VERSION     DATIQF010000789.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3317
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12533"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..632
                     /locus_tag="VLL95_13620"
     CDS             <1..632
                     /locus_tag="VLL95_13620"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSR39947.1"
                     /translation="YIPSNIADRVKAKLVAEVESMKRGSVEDFGNFINAVIDEKSFDK
                     LKKYIDNAKKDRKAKILVGGNCSKKDGFFIEPTVIEVRDPRYITMCEELFGPVLTIYT
                     YKADEFEKAMDLVDTTSPYALTGSIIAQDRSAVEAATKRLRHAAGNFYINDKPTGAVV
                     GQQPFGGARASGTNDKAGSMLNLYRWLSARTIKETYNPPTDYRYPFLQS"
     gene            complement(714..1955)
                     /locus_tag="VLL95_13625"
     CDS             complement(714..1955)
                     /locus_tag="VLL95_13625"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HSR39948.1"
                     /translation="MKKLIAAALAIGTGLFAVGQPSEKGIRFEHGTTWQAVLAKAKRE
                     NKYIFVDAFTTWCGPCKAMAKNIFPQEEVGRFFNANFINLKVQLDTTVNDNIEVKLWY
                     KDAHDIMVNYQVKVFPTYLFISPNGMLAHRAVGASDAATFIQKGKNALDPAKQYYTLL
                     QHYKAGDQGPGLLKMLAEAATEAYELEAASEFAGKYLRTQSDLFTAENVAFLNKFTNN
                     TSDTGFILMLKHPEKFEAVLGKAEARTKVRFMILGNDLLPKIFNAPGAPQWEEITTNA
                     EKLYGPAGKEAVASAKLYYYQREGLWNEFSEALLTYTPAYPDNLRPLELNYFARSVLE
                     NCDDRACLERAVEMGKKAAEVSDPAYKDTYANLLYKAGKKVEAIKAQEEAIALAKSTN
                     HSNTSGFESNLQKMKKGERTW"
     gene            2104..2628
                     /gene="pyrR"
                     /locus_tag="VLL95_13630"
     CDS             2104..2628
                     /gene="pyrR"
                     /locus_tag="VLL95_13630"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: protein motif:HMM:NF003549.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HSR39949.1"
                     /translation="MKQILSDKEIPLIIKRLAYQIVEDHPDPDKIVFVGVQPRGVHLS
                     DRMVPELNKLYKQDVAYGILDITFYRDDVRNEIMVPNQTRLDMSLENKEVILIDDVLY
                     TGRTTRAALDALLDFGRPSKVTLCVLIDRRFNREIPIQPDYSGKTIDTIFSQKVKVLW
                     NENDGKDQVVLLDQ"
     gene            complement(2695..>3317)
                     /locus_tag="VLL95_13635"
     CDS             complement(2695..>3317)
                     /locus_tag="VLL95_13635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39950.1"
                     /translation="SGDLTNGKKEVDVPFGTISSISESPLRFGLLYAGTDDGNVHVSK
                     DGGYSWTSINTGLPKDLCVSRVFASHHKEGRVYVTLNGYRNDHFKAYVFVSEDYGTTW
                     KSISSNLPLEPVNVIREDHKFENILYVGTDGGLYVSKDRGTSWNIWKNGLPHAIPVHD
                     LAVQERENEILVGTHGRSIYVADLNEMHGLEPKKEAPVRRNPWEDD"
BASE COUNT          846 a          808 c          775 g          888 t
ORIGIN      
        1 cctacattcc cagcaacatc gccgatcgcg tcaaagccaa actggtggcc gaggtagaga
       61 gcatgaagag gggtagtgtg gaagactttg gcaacttcat caatgccgtt attgacgaaa
      121 agagcttcga caaactgaag aagtacattg ataatgccaa aaaggatcgc aaagcgaaaa
      181 tcctggtggg tggcaactgc agcaaaaaag atggattctt tattgagcct acagtcattg
      241 aggttcgcga cccccgatat atcaccatgt gcgaagagtt gtttggcccg gtgcttacca
      301 tttatactta caaagccgat gagtttgaaa aggctatgga tctggtggac acaacttcgc
      361 cgtatgcact caccggttcc atcatcgcac aagatcgttc tgcagtagaa gctgctacca
      421 aacgtctacg tcatgcagcg ggcaatttct acattaacga taaaccaaca ggagcagtag
      481 ttggtcagca accttttggt ggcgcccgtg ccagtggtac caacgataaa gcaggcagca
      541 tgctcaacct gtaccgttgg ctgagtgccc gcactattaa ggaaacctac aatcctccga
      601 ccgattacag gtatccattc ctgcaatcat aatctgcaaa tatttgttgt ggtacaaaaa
      661 gagccggttg cattcttgca ccggctcttg tatttggtaa ggttgtaaat attctaccag
      721 gttctttctc cctttttcat cttctgtaag ttggactcaa acccacttgt attgctgtgg
      781 ttggttgact ttgccaaagc aatggcctct tcctgtgctt ttatggcctc cacttttttg
      841 cctgctttgt aaagcaggtt ggcataggtg tccttgtatg ctgggtcact tacttccgct
      901 gcttttttgc ccatttctac tgctctttcc aggcaggcac ggtcatcgca attctctagc
      961 accgacctcg caaaataatt caattccagg gggcgtaaat tatcggggta tgccggcgta
     1021 taggtcagca aagcctccga gaattcattc cacagccctt cgcgttgata gtagtacaat
     1081 ttagcactgg ccactgcttc ttttcctgct ggtccgtaga gtttttcagc gttggtcgta
     1141 atttcttccc actggggagc accgggagcg ttgaaaattt tgggcaaaag gtcattgccc
     1201 aaaatcatga agcgtacttt ggtgcgggcc tccgctttgc cgagcaccgc ttcgaacttt
     1261 tcgggatgtt tcagcatcag tataaaaccg gtatcactcg tgttgttggt gaatttgttc
     1321 aggaatgcaa cgttctccgc tgtaaacaaa tccgactgtg tccgaaggta tttgccggca
     1381 aattcactgg cagcttccag ttcgtatgcc tcggtggcag cctccgccag cattttgagc
     1441 aatcctggcc cttgatcgcc agccttgtag tgctgcaata aagtgtaata ctgtttggcg
     1501 gggtctaaag catttttccc tttctggatg aaagtggccg cgtcggaagc gcccacggca
     1561 cgatgcgcca acatcccatt gggcgaaatg aagaggtagg taggaaacac tttgacctgg
     1621 taattgacca tgatgtcgtg ggcatccttg taccataatt tcacctctat attgtcattg
     1681 accgtggtgt ccaattgtac tttgaggttg atgaaattgg cattgaaaaa ccggccaacc
     1741 tcctcctgcg gaaagatgtt cttggccatg gctttgcatg ggccgcacca ggtggtaaag
     1801 gcatcaacaa agatgtactt gttttccctt ttggcctttg ccaacacagc ttgccaggta
     1861 gtgccgtgtt caaaacgaat gcctttttcg gagggctgac ctacagcaaa aagcccggtt
     1921 ccaatggcca atgccgccgc aattaacttc ttcatgaatg gaattcaatt gtaatcgtaa
     1981 aactaacagt tcaaccccag caagggttgc caaaaggaag ctaacttttg tgtacaactc
     2041 accaaatcct tggctttaca caactatatt tggctaactg attgggcaca aacaagtaac
     2101 ctaatgaagc aaattctcag cgataaagaa atacctctga tcatcaaaag gctggcctac
     2161 caaatagtgg aagaccaccc cgatccggat aagatcgtgt ttgtgggcgt gcagccgagg
     2221 ggtgtgcacc tgagcgaccg catggtgcca gaactgaaca aactgtacaa acaggatgtg
     2281 gcttatggca ttttggacat caccttttac cgcgatgatg tacggaatga gatcatggtt
     2341 cccaatcaaa cccggctgga tatgagcctt gaaaacaagg aagtcatact gatagatgat
     2401 gttttgtaca cggggcgcac cacacgggct gcactggatg cgctgctcga ttttggtcgc
     2461 ccgtccaaag tgaccctttg tgtgctgatc gacaggcgat tcaacaggga gatccctatt
     2521 caacctgatt actccggtaa gaccatcgac accatctttt cccaaaaagt gaaagtgctg
     2581 tggaacgaaa atgatggaaa ggatcaagtg gtactacttg atcaataagg tagaacttat
     2641 tacaagaaaa aagccggtga tgaagccggc ttttttcgta tcgcttgcat tgcatcaatc
     2701 atcttcccag ggattgcgac gaacaggcgc ttctttcttt ggctccagcc cgtgcatttc
     2761 gttcaggtcg gcaacataaa tgctgcggcc atgcgtaccc actaagattt cgttttctct
     2821 ttcctgcacc gctaagtcat gcacaggaat ggcatgtggc aagccattct tccagatatt
     2881 ccatgaagtg ccacggtctt tggaaacgta gagtccgcca tcagtaccta cgtacaggat
     2941 gttctcaaac ttatggtctt cgcgtatcac attcacgggt tccaacggaa gattgctgct
     3001 gatgcttttc caggtagtac cataatcttc gctcacgaaa acataggctt tgaaatgatc
     3061 attgcgataa ccattcagtg ttacatacac tcttccttct ttgtggtggc tggcaaacac
     3121 ccggctcaca caaaggtctt tgggtaaacc agtgttgatg gaggtccagc tataaccacc
     3181 atccttgctc acgtgtacat tgccatcatc ggtacctgcg tacaacaaac caaaacgcaa
     3241 aggactctcg ctgatgctgg aaatggtgcc aaaaggaaca tcgacttctt ttttgccgtt
     3301 ggtcaggtcg ccactca
//
LOCUS       DATIQF010000790         5307 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_12543, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000790 DATIQF010000000
VERSION     DATIQF010000790.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5307
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12543"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2080)
                     /locus_tag="VLL95_13640"
     CDS             complement(<1..2080)
                     /locus_tag="VLL95_13640"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSR39951.1"
                     /translation="MRKHLKRIMAACLMLATMLAHAQEKTVTGKVTDARDGSPMVGVT
                     IYSTKNDRRAQTNAEGQFTIVAGVGDPIRFTYVGYNTKTVVVPASGVLNVQMEIGVSE
                     MGDVVVTALGIKRQKRGLGYSTQELKGEQIVETQRENFINSIQGRVAGATVNSTSGAP
                     GASAQIVLRGFNSLTGNNSPLFIVDGLPINNDAFRQGLLASDRPNRDNDYTNRGIDLN
                     PDDIESLTVLKGPEATALYGIEAGSGAIVITTKKGRAGKMKVSYDNHFRLEKLTRYPD
                     IQTEFSTGTNGVFDSTIRSRFGPRWPAGTQLYDNAEVFFETGFSQKHNVNLDGGNAKM
                     TYRANATFQDQQGIIPNTRFTRFAPRVTLVNNFSKQFRMTNSLAYSHTKNVKAFRGAG
                     GFLNSLLLWPNNKDVRNWQDEFGNREKIVDDPLFSEVDNPFWDVNRNRKEDVNDRYFY
                     NLELSYDPLKWLNVTGRGSMDYYNQWGQTMWSPQSNSYLSVGGFMEYYSMRYMGLSGN
                     VIATAKKDFGNFKTTFRLGSSVDQFRTESWSERAEDIGDFFDFQMATRPEKRFNSRLT
                     GRDTLRIKRLVGYFGEIGVSYKDVIYLSATGRNDFTSTLSSDLNSFFYPSVSTSIVLS
                     DLFFPESRTVTFAKLRGSIAGTAKDLQPYRSQSVYTPQLTSGAGYLYGFTNNNPYISP
                     ERQRTYEIGTE"
     gene            complement(2262..3008)
                     /locus_tag="VLL95_13645"
     CDS             complement(2262..3008)
                     /locus_tag="VLL95_13645"
                     /inference="COORDINATES: protein motif:HMM:NF012669.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HSR39952.1"
                     /translation="MLKQERHAFILQQLNIHNRVMSNDLLHTLGVSEDTIRRDLQELA
                     EEGQLVKVHGGALSKGFHFTLSTNDVYFAEGKKSIACKAATLVDDGMLVLLSGGTTIR
                     ELVKALPAELKATFVTPSLPIALELTNHPSSELIFVGNRINKSSQMAVGAEVMKQLGS
                     FHADICFLGTNAIDEMAGITESTWEVLEVKKEMIRLSDKLVSMVISEKLNTKQPLKVC
                     AAEEVHTLITELNPHHPMLESYRSKGMQIL"
     gene            complement(3114..4298)
                     /gene="nhaA"
                     /locus_tag="VLL95_13650"
     CDS             complement(3114..4298)
                     /gene="nhaA"
                     /locus_tag="VLL95_13650"
                     /inference="COORDINATES: protein motif:HMM:NF018648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HSR39953.1"
                     /translation="MPIGFLRRRFINYLQEFIHDSRAIGIILLSCTVVSLLVANTEFG
                     PVINEWLVAAWHPLESMHLPHSILHLINDGLMAIFFFLVGMEIKRELVVGELSSVKRA
                     LLPIAAAAGGMVMPAIIFLLFNKGTFFQNGWGIPTATDIAFSLGVASMLGKRFPNSLK
                     IFLTALAIIDDLGAILVIAFFYGDAVKLVWLLAAGGIVLVLYWLNKKRYRFGLIQLFL
                     GFLLWYAVFNSGIHATIAGVVFAFMVPAHELTNWEHKLHNPVNFLILPLFALANTVIV
                     LNASVLGEVWTSTLGLGVMAGLVLGKPLGIFFACRTLVRNKVADLPKGINWYQLFGAG
                     IVAGIGFTMSIFITGLAYSDLQYQDISKIAILFAALISIVAGVVWFRAIKNPASIDHN
                     LR"
     gene            complement(4358..>5307)
                     /locus_tag="VLL95_13655"
     CDS             complement(4358..>5307)
                     /locus_tag="VLL95_13655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39954.1"
                     /translation="FYNLKSGKAVFSKRSTIIDSASSIVADDIAFDDKEGLGQFSGNV
                     VFVDTANGLTVLSNKLFANRKTSSFLATVLPLMILKQQEDSLFVTADTLFAGRLTDIK
                     NRKVPLLIDTAGKNYIAPDLNGKDSSMNRFFEAWHHVRIFSDSVQAVCDSLFYAGTDS
                     VFRLFNDPLVWSSESQVSADTMYLFTKDKKADRLLAYYNGFIINKVSGVYNQVKGNTL
                     NALFDKGNIQYVRAKGRAESIYYAQDDKDKFIGMNRSSADAIDMFFENKKAQKVKFIN
                     DLKGITYPMRQIPPDEDKLKGFNWQEGRRPKSRFELLGR"
BASE COUNT         1347 a         1308 c         1249 g         1403 t
ORIGIN      
        1 cttcggttcc aatttcatag gtccgctggc gttcggggga gatgtaaggg ttgttgttgg
       61 tgaaaccata caggtacccg gcccccgaag taagctgcgg cgtgtatacg ctttggctgc
      121 gatatggttg aaggtccttg gcggttcccg caattgaacc acgaagtttg gcaaatgtaa
      181 ccgtacgaga ttcggggaag aacaaatcgg acagcacaat tgaagtactt acgctgggat
      241 agaaaaatga gttgagatca ctggacaagg tagaggtgaa gtcgttacga ccagtagccg
      301 aaaggtaaat gacatcctta tagctgactc caatttctcc aaaataacct accagcctct
      361 ttatgcgcag cgtgtcacga ccggtaagcc ggctgttaaa gcgcttttcg gggcgtgtgg
      421 ccatttgaaa atcgaagaag tccccaatat cctctgccct ttcgctccac gattcagtcc
      481 tgaactggtc gacggatgat ccgaggcgaa aagtcgtttt gaagttgccg aaatctttct
      541 tggcagttgc aattacgttg ccgctcaagc ccatgtaacg cattgagtag tactccataa
      601 atccacccac actcaaatag gaattcgatt gtgggctcca catggtttgg ccccattggt
      661 tgtagtagtc catgctgcct cggccggtta cgttcaacca cttgagggga tcatagctca
      721 attcgaggtt gtagaaataa cgatcgttaa cgtcttcttt tctattacgg ttcacatccc
      781 aaaacgggtt gtccacctcg gaaaaaagag ggtcgtctac aattttctcg cggttgccaa
      841 actcatcctg ccagttgcgc acatccttgt tgttgggcca aagcagcagg ctgttcaaga
      901 atccacctgc ccccctgaaa gcttttacat tcttggtatg cgaatatgcc aatgagttgg
      961 tcatcctgaa ttgcttgctg aaattgttta cgagggtcac cctgggtgca aaacgggtga
     1021 accgggtgtt aggaataata ccctgctgat cctggaaggt cgcattggcg cggtaggtca
     1081 ttttggcatt gcctccgtcc aggttaacat tgtgcttttg agagaaccct gtttcgaaga
     1141 atacctcagc attatcataa agctgggtac cagccggcca acggggtcca aatcgggacc
     1201 ttattgtaga atcgaaaacg ccgttagtac cagtgctgaa ttcagtctgg atatcaggat
     1261 acctggtcag cttttccaaa cggaagtggt tatcatagga aaccttcatt ttgcctgcac
     1321 gacctttttt ggtagtgatc acgatagcgc cactacctgc ctcaatacca taaagcgcag
     1381 tggcttcggg tcctttcagc acggtcaggc tttcgatatc atccgggtta aggtcgatgc
     1441 cccggttggt atagtcgttg tcgcggttgg ggcggtcgct ggccagcagg ccctggcgaa
     1501 acgcatcgtt gttgatgggc aaaccatcca caatgaacaa aggagagtta ttgcccgtaa
     1561 gtgagttaaa accacgcagc actatttgag ccgaagcgcc cggcgcacca ctggtgctgt
     1621 taaccgtagc accggctaca cggccttgta tggagttgat gaagttctca cgctgggtct
     1681 ccactatttg ttcgcctttc agttcctggg ttgagtaccc gaggcctctt ttctggcgtt
     1741 tgatacccag ggcagtcacc actacatcgc ccatttctga tacccctatt tccatttgca
     1801 cattcagcac accggaggcg ggcaccacaa cggtcttggt attgtagccc acataggtaa
     1861 accggatagg atctcccaca ccagccacaa tggtgaattg accttcggca ttggtttggg
     1921 ccctgcggtc gtttttggtg ctgtaaatgg taacacccac catgggtgac ccatccctgg
     1981 catcggttac tttaccggta acggtttttt cttgtgcatg ggccaacatg gttgccaaca
     2041 tcaggcaggc ggccatgatt cttttcagat gttttctcat acagtttttg ttttatctac
     2101 ttagagcctt cgttgctgtg gttcagaacc cggattttgc aacccttcgc ccttactgag
     2161 gcagacgatt gaatttttga tatgctattg ttatttacaa tcacttaaaa agactgtgtt
     2221 gatgcccatt tggctgcacc aacgcactcc tgttcttttg gctagagaat ctgcatgcct
     2281 ttcgacctgt aagattccag catggggtgg tgtgggttca attctgtaat gagcgtatgc
     2341 acctcttcgg cggcgcatac tttcaagggt tgtttggtgt tcagtttttc agaaatgacc
     2401 attgacacca acttgtcact caaccttatc atttcttttt ttacctccag tacctcccag
     2461 gtactttcag tgataccggc catttcatca atggcattgg tgcccaaaaa acagatgtcg
     2521 gcatggaaac tgccgagttg cttcatcact tccgcaccta ctgccatctg gctgcttttg
     2581 tttatccggt tgcctacaaa aattagttcg ctgctgggat gattcgtcaa ctccaatgca
     2641 atgggcaaac tgggtgtaac aaaagtggcc tttaattctg ctggcagggc ttttaccaat
     2701 tcccgtatcg tagtaccacc tgaaagcagc accagcattc cgtcatccac cagcgtagcc
     2761 gctttgcatg caattgattt tttgccttcg gcaaaatata catcgttggt tgaaagggta
     2821 aaatgaaagc ctttggacaa ggcgcctcca tgcactttta ccagttgtcc ttcctccgct
     2881 aattcctgta aatctcttcg gatagtatcc tccgacacgc caagtgtatg caagaggtca
     2941 ttgctcataa cccggttatg gatattgagt tgctgtaaaa tgaaagcatg tctttcttgt
     3001 ttcagcatat tgcaagcagt gcgtttcggc aaaaacctgc ataaatgtag gaagcaaacg
     3061 attgcaaacc ccgaattcct gcaaaaacct gcaaaaaatg tggatgactg gttttaccga
     3121 agattgtggt ctatgcttgc agggtttttg attgcccgga accacactac cccggctaca
     3181 atgcttatca atgcggcaaa taagatggca atcttggaaa tgtcctggta ttgaagatct
     3241 gaatatgcca accctgtaat aaagatggac atggtgaagc cgataccggc aacgataccc
     3301 gccccaaaaa gctggtacca gttgatgccc tttggcaggt ccgccacttt gttgcgaacc
     3361 aaggttcggc aggcgaagaa tatgcccagg ggtttgccca acaccaaccc ggccattacg
     3421 ccaaggccaa gcgtactcgt ccagacctcg cccaataccg atgcgttgag tacaataaca
     3481 gtattggcca atgcaaacag gggcagaatc agaaaattca ccgggttgtg gagtttgtgc
     3541 tcccagttgg tgagttcatg ggcgggtacc ataaaagcaa atactacccc ggctatggtg
     3601 gcatgaatgc cggaattgaa aacagcatac caaagcagaa aacccaggaa caattgaatg
     3661 agtccgaaac gatagcgctt tttgttcagc caataaagca ccagcactat gccccctgcc
     3721 gccagcagcc aaaccagttt gacagcatct ccatagaaaa atgcaattac gaggatggcg
     3781 cccaggtcat cgatgatggc caaagcggta agaaatatct tcaggctatt agggaaccgc
     3841 ttgcccagca tggaagccac acccagtgaa aaagcaatat cggtagcggt gggtatgccc
     3901 catccatttt gaaaaaacgt ccctttgttg aataaaagga aaattatggc cggcattacc
     3961 ataccgccgg ctgcagcggc aatgggcaac aaagctctct tcacactcga cagttcacct
     4021 actaccaact cccgtttgat ctccattccc accaggaaaa aaaagatcgc catcaagcca
     4081 tcattgatca ggtggagaat ggagtgaggc aggtgcatgg attccagcgg atgccatgcc
     4141 gccaccagcc attcattaat tacaggaccg aactcagtat tggctaccag caaagaaact
     4201 actgtacaag aaagcagaat gatgccaatg gcccggctgt cgtgaatgaa ttcctgcaaa
     4261 taattgatga agcgccggcg caagaaacca ataggcataa ttcaaaaggc tggtgaagct
     4321 ttaaaagtaa ggcaattcta atcagagcat tcctgtatca cctacccagc aattcaaacc
     4381 ggctcttcgg cctcctgcct tcctgccagt tgaatccttt caatttgtcc tcatccggag
     4441 gtatttggcg catggggtag gttatccctt tgaggtcgtt gatgaacttg accttttgtg
     4501 ccttcttatt ttcgaagaac atgtcgatgg catcggcgct ggagcggttc atcccgataa
     4561 acttgtcttt atcgtcttgt gcgtagtaaa tgctttcagc cctgcccttg gccctcacat
     4621 attgaatgtt ccctttgtcg aatagggcat tcagcgtatt tccctttacc tggttgtata
     4681 cgcctgaaac tttgttgatg ataaacccat tgtagtatgc cagcagccga tcggcctttt
     4741 tgtctttggt aaataagtac atggtatcgg ccgacacctg gctttccgaa gaccaaacca
     4801 acggatcatt gaacagccgg aagaccgaat cggtacctgc atagaaaaga ctgtcgcata
     4861 cggcttgtac cgaatcagaa aaaatgcgta cgtgatgcca ggcttcaaaa aaacggttca
     4921 tgctgctgtc cttcccattc aggtctggag caatataatt tttgccggca gtatctatca
     4981 gcagcggcac ttttcggttc tttatgtcgg tgagccttcc ggcaaacaaa gtgtcggcgg
     5041 ttacaaacaa tgaatcttcc tgctgcttca atatcattaa tggcagtacc gtggccagga
     5101 aagaagaagt ctttctgttg gcaaacaatt tattcgacaa aacggtgagc ccgttggcag
     5161 tatctacaaa cactacgttg ccgctgaatt gtcccagtcc ttccttgtca tcaaaggcaa
     5221 tgtcatcggc cacaatggaa gaggcactgt ctatgatagt ggaacgtttg ctgaaaacag
     5281 cctttccgct tttcagattg taaaagc
//
LOCUS       DATIQF010000791         1764 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_134338,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000791 DATIQF010000000
VERSION     DATIQF010000791.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134338"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            108..1271
                     /locus_tag="VLL95_13660"
     CDS             108..1271
                     /locus_tag="VLL95_13660"
                     /inference="COORDINATES: protein motif:HMM:NF013347.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39955.1"
                     /translation="MNLFTTKAAIVITCHKRMAPYLEQEVLSLGFQVTETFITGVKIF
                     GSINDCIKLNLNLRCASQVLYHLQSFSASNADDIYHHLQHVAWEDILPDGGYFSVTSN
                     VHNDTINNSMYANLRVKDAIVDRIRAKTGKRPATGAELTGTVIHLHWKQEDASIFVDT
                     SGDSLARHGYRKIPGLAPMLEGLAAATLYATQWDRKSPCINPMCGSGTLAIEAALIAT
                     NRRPGLYRTNYAFMHVKGYDAAVYQQEDALLETQIVDVPGLRIIATDISPKAIDNARK
                     NAIAAGVHKLIEFSVCDFADTEVPEQGAGIVIINPEYGERLGEQQALEATYGRIGDFL
                     KQKCSGYFGYIFTGNMELAKKIGLKAKRRIEFYNSTIDCRLLEYELYAGSKRQ"
     gene            1520..>1764
                     /locus_tag="VLL95_13665"
     CDS             1520..>1764
                     /locus_tag="VLL95_13665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39956.1"
                     /translation="MYFKKFFAITCLCFAGSLLNPAQAQQKFTIEDLANLTSVSEPQI
                     SPDGKSIVFVVSRPDTIKNMMNRELVCLDISSRNQKAL"
BASE COUNT          497 a          457 c          401 g          409 t
ORIGIN      
        1 ccttcatctc ataaaaaacg aaagaatcaa aaacaaaaaa gtaaaaatag cggtggccaa
       61 atagcatcca ccaggtgttt cagccatcat tactgcgtct tcataacatg aacttattta
      121 ccaccaaagc agccatcgtt attacctgtc ataaacggat ggcgccttat ttggagcagg
      181 aagtgttatc cttaggtttc caggtaaccg aaacattcat cactggtgtg aaaatttttg
      241 gcagcatcaa cgattgcatc aaactcaacc tgaacctccg ttgcgccagc caggtactgt
      301 atcacctgca atcattttcg gccagcaatg cagatgacat ttaccatcat ctgcagcatg
      361 tggcctggga agacatcctg cccgatggcg gttatttttc agtgaccagc aatgtgcaca
      421 acgacacgat caacaacagc atgtatgcca acctgcgggt gaaggacgct atcgtagatc
      481 gcatccgggc gaaaaccggc aaacgtcctg ctaccggggc tgaattgaca ggcactgtga
      541 tacacctgca ctggaaacag gaagatgcct cgatttttgt ggacacctcc ggtgattcgc
      601 tggcccggca tggttatcga aaaattcccg ggctggcccc catgctcgaa ggtcttgccg
      661 ccgccaccct ctatgccacc caatgggatc ggaaatcacc ctgcatcaac cctatgtgcg
      721 gatcgggcac gctggccatt gaagcggcct tgatagccac caaccgtcga ccaggcctgt
      781 accgcaccaa ttatgccttt atgcatgtaa aaggttacga tgccgccgtg tatcaacagg
      841 aagacgcatt gctggaaacc caaattgtag atgtgcccgg cctgcgcatc attgctaccg
      901 atatcagccc caaagccatt gacaatgccc gcaagaatgc gattgcggca ggcgtgcaca
      961 aactcattga attcagtgta tgcgattttg ctgacaccga agtgcccgaa caaggggccg
     1021 gcatcgtcat catcaatcct gaatatgggg aacgactggg tgaacagcaa gcgctggaag
     1081 ctacttatgg ccgcataggc gatttcctga aacaaaaatg cagcggctac ttcggctaca
     1141 tttttaccgg caatatggaa ttggccaaaa agatcggcct caaggccaaa cgccggattg
     1201 aattttacaa cagcaccatc gactgccgcc tgctcgaata cgaattgtat gcaggtagca
     1261 aaagacagta acccgatatg gtttgtggca ggctgaaggc gcctgtcaac gattcggcta
     1321 tttcagcagg tagacgataa tacctgcttc tggcaaagga gtattgcctg cacctgacgc
     1381 tgccgtcgca tacgtgaaaa aatgattggt tgcctccccg gcaaaaacga aaatacctga
     1441 cgtaattaaa ttacattacg ggtcagaaac ctcattcagc aactgtttcc atcagtttcc
     1501 taccgtaaac aaatgtcata tgtacttcaa aaaattcttt gccattacct gcctttgttt
     1561 tgccggttct ctcctgaatc cggcccaggc tcaacaaaaa tttaccatag aagatttggc
     1621 caacctgacc agtgtgagtg agccgcaaat ttcgcccgat ggaaaaagta tcgtgtttgt
     1681 ggtatcgaga cccgatacca tcaaaaacat gatgaacagg gaactggtgt gtcttgatat
     1741 ttctagccga aatcaaaaag cgct
//
LOCUS       DATIQF010000792         1525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_88456, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000792 DATIQF010000000
VERSION     DATIQF010000792.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88456"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1525)
                     /locus_tag="VLL95_13670"
     CDS             complement(<1..>1525)
                     /locus_tag="VLL95_13670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39957.1"
                     /translation="TRDARIKKKRPDDMPKDSLGIVTLGNNNFVKVPRVKAYKMPSEA
                     GSWVAYHLEKPLPDTAKKAPAVPKNPQADSLRKVVDSLTALMNKFPEKVQRKYLDEAT
                     GEWVDADEPTAGNNAGGDTGSELVWYDLAAGKKTSFKNVTDFAVDKFGNKLGLKTAKA
                     GRDSLAKAYVLVGDSKTAKVDTVMRGFNDAKNMAFDETGSQLALVAERDSSSKAIQKF
                     YKLWYWQQGSDSAILVADRNSPGKKADWGISENASLSFSKSGKRLFFGVAPVMPPKDT
                     TVPEFEKAQLDIWHYNDDYLQPYQLKNLDRELKRSYLAVFHTGSKKLLQLADNNLAEV
                     RTTGEGDGRWFWAIDDRSSRVASQWAGRGKGDLYVIDPETGTSKMVKAGVDGVPFGDN
                     PDGTAVVWYEHGDKQYHTWADGKEAIVSKGIKAALYDEENDVPDDPNPYGVMAWTKDG
                     RTLFVYDRYEIWRLDPAGVNAPVSITGGAGRQSGVTIRWQNLNRDENYVQFGEDYLFT
                     "
BASE COUNT          294 a          451 c          376 g          404 t
ORIGIN      
        1 gtgaacaggt agtcttcgcc aaactgaaca tagttctcat cacggttgag attctgccag
       61 cgaatggtaa cgcccgactg ccggccggca cctcctgtga tgcttaccgg tgcattcaca
      121 ccagcaggat cgagtcgcca gatttcgtac ctgtcgtaca cgaacaacgt gcggccatcc
      181 ttggtccacg ccattacacc ataaggattc ggatcatcag gcacatcatt ctcttcgtcg
      241 tacaaagcgg ctttgatgcc tttcgaaaca atggcttcct ttccatcagc ccaggtgtgg
      301 tattgcttgt cgccatgctc gtaccacact acggctgtgc catcaggatt gtcgccaaag
      361 ggcacgccat ccacgccggc cttcaccatc ttgctggtgc ctgtttccgg gtcaatcaca
      421 tacaggtctc ctttgccacg acctgcccac tggctggcca cgcggctgga cctatcgtca
      481 atcgcccaaa accagcgacc atcaccttca ccggtggtac gcacttccgc caggttgtta
      541 tcggccagtt gcaacagctt cttgctgccg gtatggaaca ccgccaggta gctgcgcttc
      601 aattcacggt caaggttttt cagctggtag ggctgtaaat aatcatcgtt gtaatgccag
      661 atatcgagct gtgctttttc aaactccggc accgtagtgt ctttgggtgg catgacgggc
      721 gctacgccaa agaacaaccg cttgccactc ttgctgaagc tgaggctggc attttcgctg
      781 atgccccagt cagccttttt tcccgggctg ttcctgtctg ccaccagtat ggcgctatcg
      841 ctgccctgct gccagtacca cagtttgtaa aacttctgga tcgccttgct gctgctgtct
      901 ctttcggcca ccaatgccag ttgagaaccg gtttcatcaa aagccatgtt tttggcgtcg
      961 ttaaaaccac gcatcacggt gtccactttg gcggttttcg agtcgcccac caacacgtag
     1021 gctttcgcca gtgagtcacg acccgctttg gctgttttca accccagttt gttgccaaac
     1081 ttgtcaacgg caaaatcagt cacgtttttg aaactggttt tcttacccgc ggccaaatcg
     1141 taccaaacca attctgaacc ggtatcgccg ccggcattgt tgcctgcagt gggttcatcg
     1201 gcatccaccc attcgcccgt ggcttcatcc aggtatttgc gctgcacttt ttccgggaat
     1261 ttgttcatca aagccgtgag gctgtccacc actttgcgca ggctgtcggc ctgtggattt
     1321 ttgggcacgg caggcgcctt tttagcggta tcgggcaagg gcttttccaa atgataagct
     1381 acccaactgc cagcctccga aggcattttg taggccttca ccctgggcac tttcacgaag
     1441 ttgttgttgc cgagggttac gatgccgagg ctgtccttgg gcatatcatc ggggcgcttc
     1501 tttttgatgc gggcatcacg ggtgt
//
LOCUS       DATIQF010000793         3383 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_103465,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000793 DATIQF010000000
VERSION     DATIQF010000793.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3383)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3383)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3383
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103465"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..797)
                     /gene="hemF"
                     /locus_tag="VLL95_13675"
     CDS             complement(<1..797)
                     /gene="hemF"
                     /locus_tag="VLL95_13675"
                     /EC_number="1.3.3.3"
                     /inference="COORDINATES: protein motif:HMM:NF003727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004109 - coproporphyrinogen oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-dependent coproporphyrinogen oxidase"
                     /protein_id="HSR39958.1"
                     /translation="MLVKDQFIGFIHQLQDDICLALEQADGKAKFVQDEWQRPEGGGG
                     KTCVIANGNVFEKGGVNSSVVFGEVTDIMRQQLKIDGQRWFAAGISSVIHPFNPFVPT
                     IHFNYRMFELYDAEGNTIDRWFGGGTDLTPYYLDKVDCRHFHQTFKAACDSIDNRFYP
                     EFKTTCDNYFVNTHRGNERRGIGGIFYDHKREAAGYTTDTWLKLAHACGYAFMDAYLP
                     IVEKHKHQLFTPGQKHWQEIRRGRYVEFNLVHDRGTIFGLKTNGRIE"
     gene            complement(846..1871)
                     /gene="hemE"
                     /locus_tag="VLL95_13680"
     CDS             complement(846..1871)
                     /gene="hemE"
                     /locus_tag="VLL95_13680"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: protein motif:HMM:NF013381.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HSR39959.1"
                     /translation="MLQNDLLLRALRGEELKRPPVWMMRQAGRYLPEYMALKAKYDFF
                     TRVQTPELAAEITLQPIDIVGTDAAIIFSDILVIPQAMGVEVLMEEGKGPSLPDTIKT
                     KADIDRLITEGVEESLGYVMQALQLTKQQLNGRVPLIGFAGAPFTILCYMVEGKGSKT
                     WEKAKKFCFTQPELAHALLQKITDITIAYLKAQVKAGADVVQVFDSWSGSLSKRDFEA
                     FAQPYLVQIAQALQADAPVILFPKGSWYALPALAQSGASGIGIDWCIEPAMARSLTNS
                     SITLQGNFDPAYLLAPIPQIKQRVKEMIDAFGTQRYIANLGHGITPDVPVDHARAFVD
                     AVKEYGE"
     gene            complement(1896..2612)
                     /locus_tag="VLL95_13685"
     CDS             complement(1896..2612)
                     /locus_tag="VLL95_13685"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HSR39960.1"
                     /translation="MSSGHLHILSTRPLGDAIISDARSKGIVIDEMEFIQTRPLNTPE
                     LEAKVQSLVHQNIVAVFTSMNAVEAVANMLGIQQPAWRIGCIGQTTQLLVETLLPDSV
                     IIATGSDATELANNLLPKIDNSDVYFFCSNIRRDELPGILLAGGVPLQEVVVYETMET
                     PHVLQTAYDGVLFFSPSAVRSFFSTNRPAANAVLFATGKTTAAAIREHCSNEVQVAEA
                     PGKMELVKKLMSWCASKRPA"
     gene            complement(2609..>3383)
                     /gene="hemC"
                     /locus_tag="VLL95_13690"
     CDS             complement(2609..>3383)
                     /gene="hemC"
                     /locus_tag="VLL95_13690"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: protein motif:HMM:TIGR00212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HSR39961.1"
                     /translation="TPLYEMGVQGAFTRTLDAALLNNRIDIAVHSMKDVPTQLPKGIQ
                     QCAVLPRGHTEDVLVYNGDVSIFSHQESSLLIATSSIRRKAQWLYRYPNTRFENLRGN
                     MQTRLDKLNQSDWNGAVFAKAGLDRIGLLPENQLVLDWMLPAPAQGAVMVVCREDDGP
                     VMAACEKINDEFTAACVKIERDFLRALLGGCATPISALAEHHFNHISFTGNVCLPDGS
                     DMLEVSCTFGLEDVEEAGYTAAEKFLSNGGSKLIDQLKA"
BASE COUNT          799 a          934 c          775 g          875 t
ORIGIN      
        1 ctttcgatgc gaccatttgt ttttaatcca aaaatggtgc ccctgtcgtg caccaggttg
       61 aactccacgt aacgcccacg tcggatttcc tgccagtgtt tttgccccgg cgtgaacaac
      121 tgatgcttat gcttttctac aatgggcagg taagcgtcca taaacgcgta gccacaggca
      181 tgcgccagct tcaaccaggt atcagtggta taaccggcag cttctctctt atgatcgtag
      241 aatatgccgc caatgccacg acgctcattg ccccgatgcg tattcacgaa atagttatcg
      301 caggtggttt tgaattcagg gtagaaacga ttgtcaatgc tgtcgcaggc cgctttaaat
      361 gtttggtgaa aatgacgaca gtcaacttta tccaggtaat agggtgtgag gtctgtacca
      421 ccaccaaacc agcgatcgat ggtattgcct tccgcatcgt acaattcaaa catgcggtag
      481 ttgaagtgaa tagtaggaac aaaggggttg aatggatgga ttaccgagga aatgccggcc
      541 gcaaaccaac gttgtccatc aatcttcagt tgctggcgca ttatatccgt cacttcgcca
      601 aacacaactg aactattcac accgcccttt tcaaaaacat tgccgttggc gatcacacag
      661 gtcttgccac cgccaccttc gggccgctgc cattcatcct gcacaaattt cgccttgcca
      721 tctgcctgct ccaatgccaa gcagatgtcg tcctgcaact gatgaatgaa tcctatgaac
      781 tgatctttta ccaacattgc cttattccct tattgcccca ttcacttatt gactttttga
      841 ctcattcact ccccgtattc cttcactgca tccacaaaag ccctggcatg atccaccggc
      901 acatcgggcg taataccatg accaaggttg gcgatgtaac gttgtgtgcc aaacgcatca
      961 atcatttcct tcaccctttg tttgatctga ggtataggag ccagtaaata ggccggatca
     1021 aaattaccct gcagggtgat gctgctgttc gtgaggctac gcgccatggc aggttcaatg
     1081 caccaatcga tgccaatgcc ggaagcacca ctttgtgcca gcgccggcaa tgcataccag
     1141 cttcccttgg ggaataagat cactggagca tccgcttgca atgcctgtgc aatctgcacc
     1201 aggtaaggct gtgcaaaggc ttcgaaatcc cgcttgctca atgagccgct ccagctatca
     1261 aacacctgca ccacatcagc gcctgctttt acctgagctt tcaggtaagc aatggtaatg
     1321 tctgtgatct tttgcagtaa agcatgcgcc agttcaggct gcgtgaagca aaacttcttg
     1381 gccttttccc aggtcttact gcccttgcct tctaccatgt agcaaagaat ggtgaaaggc
     1441 gctccggcaa aaccgatcag cggcacccga ccgttcaatt gttgtttggt gagctgcaat
     1501 gcctgcatca catatccgag actttcctca acaccttcgg tgatcagtcg atcaatatct
     1561 gcttttgttt tgatggtatc aggcaaagat ggacccttgc cttcttccat cagcacttcc
     1621 acgcccatgg cttgcgggat cacgaggata tcgctgaaaa tgatggcagc atctgtgccc
     1681 acaatatcga tgggctgcag cgtgatctct gccgccaact ccggcgtttg cacccgggtg
     1741 aaaaaatcat acttcgcctt aagcgccatg tattcaggca aatagcggcc tgcctggcgc
     1801 atcatccata cgggtggtct cttcaattcc tcgccacgca aggctcttaa caacagatcg
     1861 ttttgtaaca tgtatttgtt ttatgactgt atgaatcagg caggccgctt gctggcacac
     1921 caactcatta acttcttcac caattccatt ttgccaggcg cctcggctac ctgcacttca
     1981 ttactgcaat gctccctgat agccgctgca gttgttttac cggtggcaaa caacactgca
     2041 ttggctgctg gcctgttcgt gctgaaaaaa ctccgcactg cactggggct gaagaacaaa
     2101 acgccgtcgt acgcagtttg cagcacatgc ggtgtttcca tggtttcgta caccactact
     2161 tcctgcaagg gcaccccacc cgccaacaaa atcccgggca gttcgtcgcg ccggatattg
     2221 ctgcagaaaa aataaacatc gctgttgtcg attttcggca gcaggttgtt tgccagctca
     2281 gtggcatcgc tgcctgtagc aatgatgacg gaatcaggca gcaaggtctc cacgagtaat
     2341 tgcgtggttt gaccaatgca accgatacgc cacgccggct gctgtatgcc cagcatgttt
     2401 gctacggctt ctaccgcgtt catgctggtg aacaccgcca ctatattctg atgcaccagt
     2461 gattgaacct tcgcttccag ttccggggtg ttcagtggcc tggtttgaat gaattccatt
     2521 tcatcgatga caattccttt gctcctggca tccgaaatga tggcgtcccc caatggtctt
     2581 gtactcaata tgtgaagatg gccgctgctc atgctttcaa ttgatcgatc agtttgctgc
     2641 caccattcga caagaatttt tctgcggcag tatagcctgc ctcttccaca tcttccaggc
     2701 caaacgtgca actcacttcc agcatatcgc tgccatcggg caggcaaaca ttgccggtaa
     2761 aactgatgtg gttgaaatga tgttcggcca atgcactgat aggtgtggcg catcctccca
     2821 agagggcccg cagaaagtcc cgctcaattt ttacacaggc agcggtaaat tcatcattga
     2881 tcttttcgca ggctgccatc acagggccat catcctcgcg gcataccacc attaccgctc
     2941 cttgtgcagg ggcaggcagc atccaatcaa gcaccagttg attttcgggc aacaacccga
     3001 tccggtcaag gcccgctttg gcaaacacgg cgccattcca gtcggattga ttcagtttat
     3061 ccaaacgggt ttgcatattg ccccgcaggt tttcgaatct cgtattagga tagcgataca
     3121 accactgcgc tttgcgccga atactgctgg tagcaataag caatgaggat tcctgatggc
     3181 tgaagatgga tacatcgcca ttgtaaacca acacatcttc ggtatggcca cgtggcagca
     3241 ctgcacattg ttgaatgcct ttaggcagtt gcgtgggcac atctttcatg ctatgcaccg
     3301 ctatatcaat gcggttatta agcaaggcgg catctaaggt gcgggtaaac gcaccctgca
     3361 cgcccatttc ataaagtggc gtt
//
LOCUS       DATIQF010000794         2341 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_255830,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000794 DATIQF010000000
VERSION     DATIQF010000794.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2341
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255830"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..649
                     /locus_tag="VLL95_13695"
     CDS             <1..649
                     /locus_tag="VLL95_13695"
                     /inference="COORDINATES: protein motif:HMM:NF019592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSR39962.1"
                     /translation="AAVGDNMNPNDFGVNGGWFGIRTTKNLPNLFPDPSGATDRRAQF
                     QQNNLEINDISKFSDGWAVTKFRNKTRTGADGSDPQKTFVDNDFPLFRLAEMYLIYAE
                     AVLRKPAAGSRDLALQYVNALRARANNGSTANNINSAQLTTDFVLDERGRELYWEGLR
                     RSDLVRYKRFTEGTYLWPWKGGVKDGRGVEPHRKIYPIPAAEILSNPNLKQNPNY"
     gene            677..1507
                     /locus_tag="VLL95_13700"
     CDS             677..1507
                     /locus_tag="VLL95_13700"
                     /inference="COORDINATES: protein motif:HMM:NF025650.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SusE domain-containing protein"
                     /protein_id="HSR39963.1"
                     /translation="MKNILKNMVPVAAAALLVWGCEKDQNMVVFESGTNPVLSTTTTA
                     PALLPGKEKDVAMVLSWTNPNYRFNTGISSHDVQYRLEFDTAGSNFSNPNKGVVVVSR
                     DLSKSFTVDDLNALFSGDNGMKLTPDKEYNFEVRAVSTIRSTAVPLTSNVIKFKAKPF
                     TPPPAVELPTSGRLFLVGDASPGGWDNPVPANQEFTKATNTRYEITIKLNGGKSMLML
                     PVNGSWADKYGWNGSNNGNNPDGDKLKRGGGDIKVPAADGTYKIVADFQNGVFTITKQ
                     "
     gene            1707..>2341
                     /locus_tag="VLL95_13705"
     CDS             1707..>2341
                     /locus_tag="VLL95_13705"
                     /inference="COORDINATES: protein motif:HMM:NF025650.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SusE domain-containing protein"
                     /protein_id="HSR39964.1"
                     /translation="MKLSNKIWAMALIGAAGFAACEKVADLPFHADGKPVVLSASASN
                     VALKAADATAGVLTFNWTDPEYSIDSTRVKFLLQVDSAGKNFSNPVTTQINGARTATI
                     TGRELNNILLRFGGSVTTVRGLDMRVVSSHANNNEQFISNAVKVTAAGFSDSSALTGS
                     TSKVTLTLNTSANKAITFNWTPSFSGFNGTVSYVMQYDSAGKNFTSPQEIAL"
BASE COUNT          643 a          585 c          542 g          571 t
ORIGIN      
        1 tgccgctgtg ggcgacaaca tgaacccgaa tgatttcggc gtgaatggag gctggttcgg
       61 tattcgtacc accaagaacc tgcccaacct gttccctgat cccagtggtg caactgaccg
      121 tcgtgcacag ttccagcaaa acaacctcga gatcaatgac atcagcaagt tttctgatgg
      181 ctgggccgtt accaagttca ggaacaagac aagaacaggc gctgatggtt cagatcccca
      241 gaagaccttt gtagacaatg atttcccgct gttccgactg gcagaaatgt acctcattta
      301 tgctgaagcc gtattgcgta agccggctgc cggcagccgc gacctggccc ttcagtatgt
      361 aaatgctttg cgtgcccgtg cgaataatgg cagcactgcc aacaatatca atagtgctca
      421 gctcacaact gattttgtgt tggatgaaag aggacgtgaa ttgtactggg aaggtctccg
      481 ccgcagtgat cttgttcgtt acaagcgttt cactgaaggc acttacctgt ggccatggaa
      541 aggtggtgta aaggatggtc gtggtgtaga accgcaccgc aagatctacc cgattcctgc
      601 tgctgaaatc cttagcaatc cgaacctgaa acagaacccc aactattaat aatcatcctc
      661 ataaagcaac atgattatga aaaacatcct gaaaaatatg gtgccggtag ccgcagccgc
      721 tttgctggtt tggggctgcg aaaaggacca gaacatggta gtgtttgaaa gcgggaccaa
      781 ccctgtgctc agcaccacta ccactgcgcc tgctttgctg cccggaaagg aaaaagatgt
      841 ggccatggta ctgtcatgga ccaatcccaa ttatcgattc aacaccggta tcagctcaca
      901 tgatgtgcag taccgccttg agttcgacac tgccggttcc aacttctcca acccaaataa
      961 aggggtggtg gttgtatccc gcgacttgtc aaagtctttt actgttgacg atttgaatgc
     1021 actcttcagc ggcgacaatg gcatgaagct gacaccagac aaagaataca attttgaagt
     1081 acgtgccgtc agcaccattc gttctactgc ggttccgctt accagtaatg tcattaaatt
     1141 caaagcgaag ccttttacac cgcctccagc tgttgaactt cctacttccg gacgtttgtt
     1201 cctggtgggt gatgcttctc ccggcggttg ggacaaccct gttcctgcca accaggagtt
     1261 caccaaggca accaatacac gctatgaaat caccatcaaa ctcaacggtg gaaagtcaat
     1321 gctgatgtta cctgtgaacg gaagctgggc tgataaatac gggtggaacg gatccaacaa
     1381 tggcaacaac cccgacggtg acaaattgaa gcgtggcggt ggtgatatca aagtgcctgc
     1441 agcggatgga acctacaaga ttgtagccga cttccagaat ggcgtattta ccatcaccaa
     1501 gcaataatct ttagtttaag tcgtcctggc acattgaatg aaatcaaagg aggaattaga
     1561 aaagaaaaca aggatcgcaa tacacatcgc agccatcatt ttccaatcaa ttccttttac
     1621 cacaataaac caggcgattt ctaaatgaac acattcaaaa tggttacgag gtaaaaccta
     1681 attaaccaac tataaaaaga taaaatatga agctgtcaaa taaaatatgg gcaatggcgc
     1741 tgattggtgc agctggcttt gcagcttgtg aaaaggttgc tgatctccct tttcacgctg
     1801 atggcaaacc agttgttctg agcgcttcag ctagcaatgt ggccctgaag gctgctgatg
     1861 ctactgctgg cgtacttaca ttcaattgga ccgatccaga gtattcaatc gattccacca
     1921 gggtgaaatt cctgctgcaa gtcgacagtg caggcaagaa cttttccaac ccggtgacta
     1981 cgcaaatcaa cggtgctcgt acggcgacca ttaccggccg tgagctgaac aacatactcc
     2041 ttcgctttgg tggttctgtc accactgtaa gaggtttgga tatgagggtt gtttcttctc
     2101 atgccaacaa caacgaacaa ttcatttcaa atgctgtaaa ggttactgct gccggcttca
     2161 gcgattcatc agcactcacc ggcagcacca gcaaagtgac cctgaccctg aatacctcag
     2221 ccaacaaggc cattactttt aactggactc cttctttcag cgggtttaat ggtactgtca
     2281 gctatgtgat gcagtacgat tctgccggta agaacttcac ttccccccag gaaattgcac
     2341 t
//
LOCUS       DATIQF010000795         2129 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_42848, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000795 DATIQF010000000
VERSION     DATIQF010000795.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42848"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1666
                     /locus_tag="VLL95_13710"
     CDS             <1..1666
                     /locus_tag="VLL95_13710"
                     /inference="COORDINATES: protein motif:HMM:NF019315.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HSR39965.1"
                     /translation="ADGKYQQIMSGRSRPFSTRKYKTSNFIFNLPVAQNDTATFYLKV
                     NSYFMQYPLHLRTEEKFIQKSHRYDLIFGFYFGFIICIVLYNFFVYLNVRDKVYLYYI
                     LYVISAGLMIAQLKGFVAILWGNNLHFLWYYAPLFIAISGVATVFFTQQILDTKIHAP
                     KLNLVLNYLFLPVYAIIILCSLLGFNLVASILNQLNGMCALFFFYATAIVVYRKGYRF
                     ARFYIAACWAYFAGVVVYVLKAFTVLPFTFFTNNAIELGSTIEMIMFSFMLSDKINAF
                     KKEKAKAQEELLLSLQENEKLIREQNRMLETKVTERTQELQQALHTLELSDAELKKKN
                     QVITHEKERSENLLLNILPFETARELKETGTTAARYHEHVTVLFSDFKGFTMLSEQIA
                     PNELVEQLDHFFKAFDDIMVKYGIEKIKTVGDCYMAAAGLPAPLANHAECMVEAAIEM
                     LEVVERFNQFNKTNTGYHYAIRIGIHSGPVVAGVVGKKKFAYDIWGDTVNTASRMEST
                     SEAGRINISLATYELVKHKYQCAHRGKIAAKNKGEIEMYFLEKAVS"
     gene            1946..>2129
                     /locus_tag="VLL95_13715"
     CDS             1946..>2129
                     /locus_tag="VLL95_13715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39966.1"
                     /translation="MRKPLLTLSVACSICFISFSQSIGIGTNTPHADAALEVASTSKG
                     ILIPRVALTAANAAAPL"
BASE COUNT          583 a          528 c          457 g          561 t
ORIGIN      
        1 tgccgatgga aaataccagc agatcatgtc gggcagaagc cgccctttca gcacccgcaa
       61 atacaaaacc agcaacttca ttttcaatct tcctgttgcg caaaacgata cagccacctt
      121 ctatttgaaa gtcaattcct atttcatgca gtacccgctg catttgcgca ccgaggaaaa
      181 attcattcaa aaatcgcacc ggtacgacct catctttggt ttctactttg gattcatcat
      241 ttgcatagta ctctacaatt tttttgttta cctcaatgtt cgcgacaagg tatatctcta
      301 ctatatcctg tatgtaatat cagccgggct gatgattgcc caattgaagg gatttgttgc
      361 catcctgtgg ggcaacaatc tccatttcct gtggtactac gcgccgctct ttattgccat
      421 ttctggtgtt gccaccgtct ttttcaccca gcagatcctc gatactaaaa tccatgcacc
      481 gaagctcaac ctggtattga actacctctt tttgccagtt tatgccatca tcatcctgtg
      541 ctcccttttg ggtttcaacc tcgttgcttc cattctcaac cagttgaatg gcatgtgtgc
      601 attgtttttc ttctacgcca ccgccattgt agtatacaga aaaggctatc gctttgccag
      661 gttttacata gcggcctgct gggcctattt cgccggtgta gtggtttatg tgctgaaagc
      721 cttcactgta ttgccgttta cctttttcac caacaatgca attgaattag ggtccactat
      781 cgaaatgatc atgttttcat tcatgctttc tgataaaata aacgctttca aaaaggaaaa
      841 agccaaggca caggaagagc ttttgttgtc gctgcaggaa aatgaaaaac tgatccgtga
      901 acaaaacagg atgctggaaa caaaagtgac cgagcgaaca caggaactgc agcaggcatt
      961 gcacactctc gagctatcgg atgcagaact gaagaaaaaa aaccaggtga tcacacatga
     1021 aaaagaacgc agcgaaaacc tgctgctgaa tattctgcct tttgaaacgg ccagggagtt
     1081 gaaagagacc ggcaccaccg ccgcccggta tcatgaacat gtgacggtcc tgttctccga
     1141 cttcaaaggt ttcacgatgc tgagtgagca aattgcaccc aatgaactcg tagagcaact
     1201 cgatcacttc ttcaaagcct ttgacgatat catggtgaaa tatggcatag agaagatcaa
     1261 gaccgttggc gattgctata tggcagcggc gggccttcct gctcccttgg ccaatcatgc
     1321 cgaatgcatg gtagaggctg ccattgaaat gttggaagta gtggagcgct tcaaccaatt
     1381 caataaaacc aataccggct accattatgc gatcaggatt ggcatccaca gcggaccggt
     1441 ggtggctggc gtggtgggaa aaaagaaatt tgcctacgac atttggggag acacggtaaa
     1501 tactgcttca agaatggaaa gcacctctga agctggccgc atcaatatca gcctggccac
     1561 ttatgaattg gtaaaacaca agtaccaatg tgcccatcgc ggaaagatag ctgccaaaaa
     1621 caaaggcgaa attgaaatgt actttttgga aaaggccgtt tcctgaggcc cgtcattgca
     1681 gatccagctg tttacagagc cgccagccgg cggaataaac agaggcaatc cttacacttt
     1741 ctgaaagcgg cgactgcgat ctgcccgtag aaaaaaattc ctgccctgga aaattgttgc
     1801 gatccaggca gatggggttg atacattttt ccaacactac cgtttgctgt ctgtatcctt
     1861 cacataagga taaatgaaaa tattttacct gcgggtgctg gttcatatag aaatttttta
     1921 tcaatttcaa agcaaatccc gcgtcatgag aaagcccctt ttaaccctta gtgttgcatg
     1981 cagcatatgt ttcatttctt tcagccaaag catcggcatt ggaaccaata ccccccatgc
     2041 cgatgccgcc cttgaagttg cctccacctc caaaggcatc ctgataccaa gggttgcatt
     2101 gaccgctgcc aatgccgcgg cccccctct
//
LOCUS       DATIQF010000796         2705 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_134416,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000796 DATIQF010000000
VERSION     DATIQF010000796.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2705
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134416"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1093
                     /locus_tag="VLL95_13720"
     CDS             <1..1093
                     /locus_tag="VLL95_13720"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HSR39967.1"
                     /translation="PTPPGADGIADLRFVLGVAADLGKLMRKGDYKIIVDKSTVPVGT
                     ADKVQEAVIASSGGTLTPGEDFDVVSNPEFLREGVAVDDFMKPDRVVIGASSEKAREK
                     MGDLFAPFVRQGNPILFMDEKSAELTKYAANAFLATKITFMNEVARMCELLGADVDMV
                     RRGVGSDERIGKRFLFPGIGYGGSCFPKDVQALAKSASEVNYEFKILESVMEVNEEQK
                     TYLIPRIKHYFNGDLAGKHFALWGLAFKPNTDDIREAPALYIIDELLKAGATVTAYDP
                     EAINNVKQLLGDKIQFASSQYEALNNADALIIATEWNEFRTPDFDRMGQTLKNKTIFD
                     GRNLFEIDHMESLGYYYFSIGRRTVKPAQ"
     gene            1109..2104
                     /locus_tag="VLL95_13725"
     CDS             1109..2104
                     /locus_tag="VLL95_13725"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucuronic acid decarboxylase family
                     protein"
                     /protein_id="HSR39968.1"
                     /translation="MEATPRKRVLITGAAGFLGSHLCDRFIHEGYHVIGMDNLITGDL
                     KNIEHLFKLEQFEFYHHDVTKFIHVPGPLDYILHFASPASPIDYLKIPIQTLKVGAMG
                     THNCLGLAKAKKARILVASTSEVYGDPLVHPQTEEYWGNVNPVGPRGVYDEAKRYLES
                     ITMAYHTYHGVETRIIRIFNTYGPRMRLNDGRALPAFIGQALRGEDLTVFGDGSQTRS
                     FCYVSDLVDGIYRLLLSDYVYPVNIGNPSEISLKDFAEEVLKLTGSNQKIVYRPLPAD
                     DPKQRKPDITKAKTILGWEPKVDRAEGLKRTYDYFKELPESEWYKQPKEFNSRKD"
     gene            2154..>2705
                     /locus_tag="VLL95_13730"
     CDS             2154..>2705
                     /locus_tag="VLL95_13730"
                     /inference="COORDINATES: protein motif:HMM:NF015666.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vi polysaccharide biosynthesis
                     UDP-N-acetylglucosamine C-6 dehydrogenase TviB"
                     /protein_id="HSR39969.1"
                     /translation="MAIYDQLLNKQEKLAVIGLGYVGLPIALEFARKVSVIGFDINQE
                     RVEMMRKGIDPSKELESAAFEGCDIHFTNNLDELKQAKFFIVAVPTPVDDHNVPDLKP
                     VLRASETIGMVVKPGDYVVFESTVYPGCTEEDCLPVIEKLSGLKMGVDFKLGYSPERI
                     NPGDKKHTLRTIVKVVSGCDAESL"
BASE COUNT          727 a          608 c          712 g          658 t
ORIGIN      
        1 gccaacgcct ccgggtgccg atggcattgc agatcttcga tttgtattgg gcgttgctgc
       61 cgacctgggc aaattgatgc gcaagggtga ttacaagatc attgttgata aaagcaccgt
      121 gcctgtaggt actgcagata aagttcagga ggccgttatt gcctcttccg gtggcacgct
      181 tactcccggt gaagatttcg atgtggtcag caaccccgag tttctgcggg aaggcgtggc
      241 tgtagacgac tttatgaaac cggacagggt ggtgattggc gccagcagcg aaaaggcaag
      301 ggaaaaaatg ggcgacctgt ttgcaccatt tgttcgccag ggcaacccca ttttattcat
      361 ggatgaaaaa agtgcagagc ttaccaagta tgccgctaac gcatttctgg ccaccaagat
      421 tacattcatg aacgaggtag cccgtatgtg cgaattgctg ggggctgatg tggatatggt
      481 aagaaggggt gtgggcagcg atgaacgcat tggcaagcgg ttcctgttcc ccggtattgg
      541 atatgggggc agctgttttc ccaaagacgt gcaggccttg gccaagtcgg cttccgaagt
      601 aaactatgaa ttcaagatac tggaatcggt aatggaggtg aatgaagagc agaaaactta
      661 tctcatcccc cgcatcaagc attacttcaa tggcgatctt gccggaaagc actttgccct
      721 gtggggattg gccttcaagc ccaataccga tgacatcagg gaagcgccag cactttatat
      781 tattgatgaa ttgctgaaag ccggtgccac cgtgacggcc tatgatcctg aagcaatcaa
      841 taacgtgaag cagttgctgg gcgacaagat ccagtttgcg agttcgcagt atgaagcgct
      901 gaacaatgct gacgccctca ttattgctac cgaatggaat gaattcagga cgcctgattt
      961 tgacaggatg gggcagaccc tgaaaaacaa aacaattttt gacggccgca acctgtttga
     1021 aatcgaccac atggaatcat tgggctatta ctatttcagc attggtcgca gaaccgtgaa
     1081 acctgctcaa taaaacaccc catctgctat ggaagcaacc cccaggaaaa gagtattgat
     1141 taccggtgca gccggatttt taggttcgca tttgtgcgac cggttcattc atgaaggcta
     1201 tcatgttatt ggcatggata acctgatcac tggtgatttg aagaacatag agcatctgtt
     1261 caaactggaa cagtttgagt tctaccatca tgatgttacc aagttcatac atgtgccagg
     1321 tccgctcgat tacattctgc attttgcctc gccggcaagc cccattgatt atttgaagat
     1381 ccccattcag accctgaaag tgggagccat gggaacccat aattgcctgg gtcttgccaa
     1441 ggcaaagaag gccaggatac tggtagcctc taccagtgaa gtgtatggcg atcccctggt
     1501 gcatccgcaa acggaggagt attggggcaa tgtgaacccg gtaggccccc gtggtgtata
     1561 cgatgaagcc aagcgttacc tcgagtcgat cacaatggct tatcatacct accatggcgt
     1621 ggaaacccgc atcatcagaa tattcaacac atacggtccc cgtatgcgac tcaatgatgg
     1681 ccgtgccttg ccggcgttca ttggccaggc attgcgtgga gaggatttga cggtattcgg
     1741 tgacggtagc cagacacgca gtttttgtta tgtgtccgat cttgttgatg gcatataccg
     1801 gctgttgctg agcgactatg tgtaccccgt aaacattggc aaccccagtg aaatttcatt
     1861 gaaggatttt gcggaagaag tgctcaaact gacaggctcc aaccaaaaaa tagtataccg
     1921 gccattgcct gctgacgatc ccaagcaacg caaacctgac attaccaagg cgaagaccat
     1981 tcttggctgg gaacccaaag tggaccgtgc ggaaggattg aaacgcactt acgattactt
     2041 caaagagctg cctgaatcgg aatggtacaa gcaacccaag gagtttaaca gccggaagga
     2101 ctgataagca tttcacgcac aaagaatttc gaaatacata cactgcaatc aaaatggcta
     2161 tttacgatca actgcttaat aaacaagaaa aactcgctgt aattggattg ggctatgtgg
     2221 gcttgcccat cgcgttggaa tttgcccgca aggtttctgt aattggtttt gacattaacc
     2281 aggaacgtgt ggaaatgatg cgcaagggta ttgaccccag caaagaattg gaaagcgctg
     2341 cgtttgaagg gtgtgatatt catttcacca acaacctgga tgaactgaag caggctaaat
     2401 tctttatcgt agcggttcct acaccggtgg atgatcataa tgtgccagat cttaagcctg
     2461 tgctgagagc cagcgaaacc ataggcatgg tggtgaagcc aggggattat gtggttttcg
     2521 aaagcactgt ttatcccggt tgcaccgaag aggattgcct gcctgtaatt gaaaagctga
     2581 gcgggttgaa aatgggcgtt gatttcaaat tgggctattc tcctgagcgc atcaatcccg
     2641 gtgataagaa gcatacactc cgaaccattg taaaagtggt gagtggctgc gatgcggaaa
     2701 gcctg
//
LOCUS       DATIQF010000797         1754 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_42875, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000797 DATIQF010000000
VERSION     DATIQF010000797.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42875"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(322..1062)
                     /locus_tag="VLL95_13735"
     CDS             complement(322..1062)
                     /locus_tag="VLL95_13735"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSR39970.1"
                     /translation="MQANSNKTTTCIVVDDEPMARDVIRRYIERIPTLELIAEFGNAI
                     DAAVFLQSNEVDMAFLDIRMPQLSGVDLVKSLRHGPKIIFTTAFKEYAYEGFELDVTD
                     YLLKPVRFERFLRAVGKALPHADTSLPVLPQMPPVQESASTDPFIYLKVDRKMVKVHL
                     DDILYIESDRDYVRVKTTQGQIMARQTIAAVEAMLSSAQFIRIHRSFIVSLRKVRSFT
                     HEIVEVGKDELPIGKLYRNQFLRAQGTT"
     gene            complement(1052..>1754)
                     /locus_tag="VLL95_13740"
     CDS             complement(1052..>1754)
                     /locus_tag="VLL95_13740"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSR39971.1"
                     /translation="KAMKNWKLREERNLQLMREKADAQLQLLTAQIHPHFLFNTLNNI
                     YSQTQLESPKGSSMIMELSDLLRYILYEGRKSQVPLDHELQMMVDYINLEKIRYGNSL
                     QLHLDLPENSNNLYISPLLLLPFIENCFKHGASKQLHTPWINLSILVEGEMMRMELCN
                     GKVPGNEEKTTGGIGIGNVVNRLKLLYPDEHNLTIEETKEAFLVKLELKLKQGLTLSN
                     QQSQVSFYESVLYAS"
BASE COUNT          487 a          401 c          372 g          494 t
ORIGIN      
        1 aattctttcc gtatggtagc caacataaga cacttccaat tgaaggcttt tatccaatgt
       61 atgcttgagc ctgaaacgac cattaagatc actggttgtt tgcaaagacg tttttagtac
      121 cctgatattg gcgccgggca atggcaacga ggtggcgtca tcaaacacga ctccatggat
      181 caaacgccca tcctgacaat acattatcag cggctgaatg caacaaataa cagcaagtag
      241 taggagcttc tgcataatgg atgataacgt aacggtgtgg gtgctaaaaa atatgaaatc
      301 catgatcctt aactggaaca ctcaggttgt accctgtgct ctcagaaatt gattccggta
      361 tagttttcca ataggcaatt catccttccc tacttccact atttcatgag tgaatgatct
      421 cactttcctt agcgacacaa tgaatgagcg gtgaatcctg ataaactggg cggatgaaag
      481 catggcttca accgcagcta tggtttgacg agccattatc tggccctggg tagttttcac
      541 ccgaacatag tccctgtcac tttcgatata caggatatca tccaaatgaa cctttaccat
      601 ctttcggtcc actttcaaat aaatgaaagg atcagtgctg gcagactcct gaactggtgg
      661 catctgtggc aaaactggca acgaagtatc ggcatgagga agcgctttgc ctacagcccg
      721 cagaaaacgt tcgaatcgaa ccggcttcag caaataatcg gttacatcca attcaaagcc
      781 ctcgtaggcg tattccttaa acgcggtggt aaatatgatc ttggggccgt gccggaggct
      841 tttcaccaaa tcgacaccgg aaagctgcgg catccggata tcgagaaagg ccatgtctac
      901 ctcgttggac tgaaggaaaa cagcggcatc aatggcatta ccgaattccg ctattaattc
      961 caaggtaggt atacgttcaa tgtagcggcg aatgacatca cgggccatag gctcatcgtc
     1021 cactacaatg catgtggttg ttttgtttga attagcttgc atataaaact gattcataaa
     1081 aagaaacctg gctttgctga tttgataacg taagtccctg cttcaacttc aattcaagtt
     1141 taaccaaaaa cgcttctttt gtttcttcaa tcgtcaaatt atgttcatcg gggtaaagga
     1201 gttttaaacg attcaccaca ttgccgatac caattcctcc ggtcgtcttt tcctcattgc
     1261 ctggcacttt gccattgcac aattccatac gcatcatctc tccctccacc aaaatagaaa
     1321 gattgatcca tggagtatgc aattgtttgc tggctccatg cttaaagcag ttctcaatga
     1381 atggcaaaag cagcaaagga gatatgtaga gattgttgct attttccggc agatcgagat
     1441 gcaattgcag actattacca tacctgattt tctcaaggtt aatgtagtca accatcatct
     1501 gcaattcgtg atccagtggc acctgacttt ttctgccctc atacaaaata tacctgagca
     1561 ggtccgacaa ttccattatc atggaggaac cctttggaga ctccaactgt gtttgagagt
     1621 aaatattgtt gagcgtattg aacaggaaat ggggatgaat ttgtgcggtg agcaattgca
     1681 attgggcgtc ggctttttca cgcattaatt gcaggttgcg ctcctctctc agcttccagt
     1741 ttttcatggc cttt
//
LOCUS       DATIQF010000798         1971 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_179897,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000798 DATIQF010000000
VERSION     DATIQF010000798.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1971
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179897"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            193..798
                     /locus_tag="VLL95_13745"
     CDS             193..798
                     /locus_tag="VLL95_13745"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HSR39972.1"
                     /translation="MKHKMLAFGFARRFQLLAIVAVMGLLTSCEKSVAPNELRGDTEM
                     MRKVPERGTMTITQIAVSNPNFSELVKALQHVDNNLGAGLVNLFNGNDQFTVFAPTND
                     AFNKLYATLKVDGISQVDPNTVLAVLKYHVTGGRRAANSVVPKQGAKTIETLLTGATF
                     SVNNMAMITAVGNTANIVAADVSASNGIIHVLDNVILPIKL"
     gene            1061..>1971
                     /locus_tag="VLL95_13750"
     CDS             1061..>1971
                     /locus_tag="VLL95_13750"
                     /inference="COORDINATES: protein motif:HMM:NF018561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1254 domain-containing protein"
                     /protein_id="HSR39973.1"
                     /translation="MKTLSYYLAAFAMLTLASCGNQTSTTDSNFDSAKVSNSDSLTPE
                     LARSIAKEAYIYAYPMVDGYRIQYAYYVAKDNTEYKAPYNVWINTARVFTSKDRTVQT
                     PNSDTPYSFAALDLRAEPMVLTIPAMEKNRYFSVQLIDYYTHNFDYIGSRTTGNNGGN
                     YLIAGPGWKGEMPKGISKVIQSETELVMAVVRTQLFNAADLVNVKKVQAGYELQPLSA
                     FLGQPAPAAAPAIAFPPPVAGPAMKTSLGVFDILNFQLQFCPTHPTETALMERFGKIG
                     IVAGKTFDTTNMSPAILEALRQGIGDA"
BASE COUNT          540 a          496 c          414 g          521 t
ORIGIN      
        1 ttcaagccgg agcaatacta agttgtggcc attgaactga attgttccac cattaatttt
       61 cttgtttaag agttcagtca ttctctgatc caaccatttc acaaatagac attagccata
      121 tttttttgcc gccgcgccaa accttttgac gaatgtttct gtttgaatca ttcaacaaaa
      181 ccttcttcag ctatgaaaca caaaatgctt gcctttggct ttgccaggcg ttttcaacta
      241 ttggctattg tagccgttat gggcttactc acttcctgtg aaaagtcagt agccccaaat
      301 gaactgaggg gagatactga aatgatgcgc aaggttcccg aaagaggtac catgaccatt
      361 acacaaattg ctgtgagcaa ccccaacttt tctgaattgg taaaagcact ccagcatgtt
      421 gacaacaacc tgggtgccgg cctcgtaaat ctgttcaatg gcaatgacca gtttactgta
      481 tttgccccta ccaacgacgc attcaataag ctctacgcca ctttgaaagt agatggcata
      541 agtcaggttg atcccaacac ggttctggca gtgttgaagt accatgtaac tggcggacgc
      601 cgggcagcca atagtgtggt tcctaagcaa ggtgcaaaaa caatagaaac attgcttacc
      661 ggtgcaactt tctctgtaaa caatatggcc atgatcactg cagtaggcaa tactgccaat
      721 atagtagctg cggatgtatc agcctccaat ggtattattc atgtgctcga taatgtgatc
      781 ctgcctatca aattgtgatc aacacaatca ggggtcaaga tccatcacct gtatttcggg
      841 tgatggattt tttttatcag ccattacagt cggcgcagat cattcaactt agacgaaagt
      901 tccttctcaa gatcagatct ccaggagctc atggctggtt atcaaccgat catttccgaa
      961 ttataaatgg caaattttaa tcttttgcca tgctgctggc attgagtaaa ttcacagcgg
     1021 tgttcatcgt tagtttttct catccttttt ccactgcaaa atgaaaacac tttcctatta
     1081 cctggcagca tttgcaatgc tgaccctggc atcgtgcggc aaccaaactt caaccactga
     1141 ttcaaatttc gatagcgcta aggtaagcaa cagcgacagc ctcacccctg agttggcccg
     1201 gtccattgcc aaagaagcct atatctatgc ctaccccatg gtggatggct accgcattca
     1261 atacgcctat tacgtagcca aagacaatac agaatacaaa gcgccataca atgtgtggat
     1321 caacacggcc cgggttttta cttctaaaga cagaacggta caaaccccca actctgatac
     1381 accctactcc tttgccgcac ttgatctgcg ggcggaacca atggtgctca ccattcctgc
     1441 catggaaaag aaccggtact tcagcgtgca actgattgac tattataccc acaactttga
     1501 ttacatcggt agccgtacaa ccggcaataa tggaggtaat tacctgattg ccgggcccgg
     1561 ttggaaagga gaaatgccca aaggcatctc caaggtgata caaagtgaaa ccgaacttgt
     1621 aatggccgtg gtgcgtacac aattgttcaa cgccgctgac ctggtgaatg tgaaaaaggt
     1681 acaggcaggg tacgaactgc aacccttgtc tgcattccta ggacagccgg cacctgctgc
     1741 ggctccggcc attgccttcc cacctccggt agcaggtcct gctatgaaaa catcactggg
     1801 cgttttcgat atcctgaatt tccaattgca attctgcccc actcatccca cggaaacagc
     1861 actcatggaa cgctttggca aaattgggat tgtagctggc aaaacatttg acactaccaa
     1921 catgtcgcct gctattttag aggcgcttcg ccagggcatt ggcgatgcct g
//
LOCUS       DATIQF010000799         1904 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_134469,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000799 DATIQF010000000
VERSION     DATIQF010000799.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1904)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1904)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1904
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134469"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..604)
                     /locus_tag="VLL95_13755"
     CDS             complement(<1..604)
                     /locus_tag="VLL95_13755"
                     /inference="COORDINATES: protein motif:HMM:NF013756.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase"
                     /protein_id="HSR39974.1"
                     /translation="MLHFSISDFDQWERFYRANFISTLSGYKPAMLVGTYNQQGIANL
                     YLFQNIVHLGANPALVGMLCRPREASPHTLGNLETSGWFSLNSVQGSFIEKAHQTSAK
                     YDAEISEFEAVGLELQQREEIAVPFVVNSEIQLALKVEQIIPIALNNTFFIIGSVQHV
                     FLQAGLLADDGTVQLDKADVVCTAGLDGYYLPRLLHRLAYA"
     gene            complement(651..1466)
                     /locus_tag="VLL95_13760"
     CDS             complement(651..1466)
                     /locus_tag="VLL95_13760"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: protein motif:HMM:NF013661.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HSR39975.1"
                     /translation="MKSINVFTGLAAFCFLSIMACTPKPYKQTNKVYKRQSKEFARQL
                     STYPLKDSFDLPTEFVGTTNFSLRKPNYVIIHHTAQNSCEQTLKTFTLPRTQVSSHYV
                     VCRTGNVFHMLNDLLRAHHAGISSWGGTSDINSNSIGIEVDNNGSEPFSEAQINSLVA
                     LLKNLKKNYRIPTKNFIGHADIAPGRKVDPSRYFPWQQLAKEGYGIWYDTTNIAVPAD
                     FNAMMALRIIGYDVTKPNAAIQSYKIHFLPTDTTTILTDTDNKILYSLMKQSM"
BASE COUNT          497 a          419 c          443 g          545 t
ORIGIN      
        1 ttgcatatgc cagccggtgc aacaaccgtg gcaggtagta accatccaaa cccgcggtgc
       61 aaaccacatc cgctttgtca agttgaaccg ttccatcatc tgccagcaaa ccggcttgca
      121 gaaaaacgtg ttgcacacta ccaataatga aaaaagtatt gttcaaagcg atgggaataa
      181 tttgctccac cttcaatgcc agttgtatct cactgttcac cacaaaaggc acagcaattt
      241 cttcacgctg ctgcagttca agacccacgg cctcaaactc gcttatttct gcatcgtatt
      301 tggcgctggt ctgatgggcc ttttcaataa acgatccttg tacgctgttc agactgaacc
      361 aacctgaagt ttccagattg cccaatgtat gtggtgatgc ttcccggggt cggcacagca
      421 tgccaaccag tgcggggttg gcccccaggt gcacaatgtt ttgaaacaaa tacaggttgg
      481 caataccctg ttgattgtaa gtgcctacca gcatggctgg tttatagcca ctcagcgtac
      541 taatgaaatt ggcccggtaa aacctttccc attggtcaaa atcacttatt gaaaaatgaa
      601 gcatacaaca actaaccaat gacctgttat taggttcatt agagaagaca tcacatgctt
      661 tgtttcatca ggctgtagag gatcttattg tccgtatcag taagtatggt agtggtatca
      721 gtgggcaaaa aatggatttt gtaggattga atagcggcgt tcggtttggt cacatcgtag
      781 ccaataatgc gcaaagccat cattgcattg aagtcagcag gcaccgcaat gttggtagta
      841 tcataccaaa tgccataccc ctctttggcc agttgttgcc atgggaaata ccggctgggg
      901 tccacctttc tgcccggtgc tatatcagca tgtccaatga aattcttcgt gggtatgcgg
      961 taatttttct taagattttt gagcagtgca accaggctgt tgatctgtgc ttcgctgaaa
     1021 ggctcacttc cattattgtc tacttcaata ccaatactgt tgctgtttat gtcggaagtg
     1081 cctccccatg aacttattcc tgcatgatgt gcacggagca gatcgttcaa catgtgaaac
     1141 acatttcctg tccggcagac tacataatgc gaactcacct gggtccgcgg cagggtgaat
     1201 gttttaagcg tttgctcaca gctgttctgc gctgtatgat gaatgatgac gtaattgggc
     1261 tttcggagag aaaaattggt ggtacctaca aattccgtgg gcagatcgaa gctgtctttc
     1321 aacgggtagg tcgacaattg ccgggcaaat tctttgcttt gcctcttata aaccttattg
     1381 gtctgtttgt agggttttgg agtacaggcc attatggaaa gaaagcaaaa cgctgctagt
     1441 ccggtgaata cgttgatact cttcatgaag gcagtctttg gtacgaggca tttgccccag
     1501 gtaatagggt acaaaaatgc agtttgacgg gctttcaaca gcattctggg ggtatgtgga
     1561 taatattggg gctctcaaat cagctccgca atggacctga aatagttcga aatagcagtt
     1621 ggggggagcc tttttgaaaa aaaattttct ggctggaaat aaaagaaggc ttggtacctg
     1681 cctggatctg cctgtttcca ggaaagggag taaaattacc gggagctgaa gacattatca
     1741 cttgtcagga cattcagcca ttcagcattg attttcaatc agatgcattt tatttggcta
     1801 gagttttcac tccttattac agggattttt tgcaaaaccc agattggcac gatccttgaa
     1861 taatgtgtgc ctgaaacacc attctgctgc ttgtttttct gcct
//
LOCUS       DATIQF010000800         2313 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_225690,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000800 DATIQF010000000
VERSION     DATIQF010000800.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225690"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(132..1319)
                     /locus_tag="VLL95_13765"
     CDS             complement(132..1319)
                     /locus_tag="VLL95_13765"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HSR39976.1"
                     /translation="MAITGKPLAATAGSMLFQQGGNAVDAACAMLAATCTMWDVLSWG
                     GETQVLLYNPNTKKVIAINALGVAPTGATPQFFKDKGYAFPPEYGPLAAVTPGTPGGL
                     CYMLAQYGTKSLKEVLAPAMQLAAGYPIEAQTANSIERQKERIKQWPYSKAVFLTHPG
                     EKREAPEAGEIFVQKDLLETLTKMVEAEQQALKQGKNRKQAIMAAYDRFYKGDIAKEL
                     VRGCQEQGGLITMDDLAKWKPIEEEPMKVNYKGIDVYKLQQWTQGPMMLQALNILENF
                     DLKGMGYNSSQYIHTVSQAMHLSFADRDFYYGDPYASKGQPMQGLLRKEYAKQRAALI
                     DPAKNLAPALPGDPYPFEGKTNPYSEWLKNWSALADTGAKGSAVPAHDRQVAYQHSAN
                     DPQ"
     gene            1634..>2313
                     /locus_tag="VLL95_13770"
     CDS             1634..>2313
                     /locus_tag="VLL95_13770"
                     /inference="COORDINATES: protein motif:HMM:NF012363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HSR39977.1"
                     /translation="MKKSFFLLLAIAGFFCFGFAQTGVAPRVKTKYGELEGVYASGIS
                     IFRGVPFAAPPVGQYRWREPQPVKPWTGVKKANQFGPRAMQLPIFGDMNFRSNGVSED
                     CLYLNIWTPNAGNTAELPVLVYFYGGGFMAGDGSEPRYDGESMARNGIVAITVNYRLG
                     VFGFMAHPELTRESPFHASGNYGLLDQSAALQWVQQNIAAFGGDPKRITIAGESAGSW
                     SVSAQMASP"
BASE COUNT          468 a          598 c          627 g          620 t
ORIGIN      
        1 tggctcatgc ccacgccggt gcggccggca atgcaggcag gtatccatcc accactgggc
       61 gtgatgctca ccacccaacc gtctttgtcg gcggcttcta ctgaagtggt gccggcccag
      121 aggcgctcca tttattgcgg atcgttggcc gaatgctggt aagccacctg cctgtcgtgg
      181 gcaggcacgg cactgccttt ggcgcctgtg tctgcgaggg ctgaccagtt cttcagccat
      241 tcggaatagg ggttggtttt gccttcaaaa ggataggggt cgccgggcaa ggcaggcgcc
      301 aggtttttgg caggatcaat caacgcggcc ctttgtttgg cgtattcctt tctcagcagg
      361 ccctgcatgg gctggccctt gctggcatag ggatcgccat agtaaaaatc cctgtcggca
      421 aaactgaggt gcatggcctg gctaacggta tgaatgtact ggctgctgtt gtagcccatt
      481 cccttgaggt caaagttttc gaggatgttc agtgcctgca gcatcatggg gccttgtgtc
      541 cattgctgca atttgtatac atcaatgcct ttgtaattca ccttcatggg ttcttcttca
      601 atgggcttcc atttggccag gtcatccata gtgatcagac cgccttgttc ctggcaaccc
      661 cgcaccaatt ctttggcgat atcacctttg taaaaacggt cataagctgc catgatggcc
      721 tgcttcctgt ttttgccttg cttcaaagcc tgttgttcgg cttccaccat tttggtgagg
      781 gtttccagca aatctttctg cacgaagatc tcgcctgctt ccggcgcttc tcttttttca
      841 ccggggtgtg tcaggaaaac ggctttgctg taaggccatt gtttgatgcg ttctttctgg
      901 cgttcgatgc tgttggctgt ttgggcttca atgggatagc cggcggccag ttgcatggcg
      961 ggggccaata cttctttcaa actcttggtg ccatattggg ccagcatgta acaaagacca
     1021 cccggtgtgc cgggtgtaac ggctgccaat ggtccgtatt cgggcgggaa agcatagcct
     1081 ttgtctttga aaaattgcgg agtggcgccc gtgggggcta cccccaatgc attgatggca
     1141 atcacttttt tggtattggg attatagagc aacacctgtg tttcgccccc ccaactcagc
     1201 acatcccaca tggtgcaggt ggcggccagc atggcacagg cggcatccac cgcgttgccc
     1261 ccctgctgaa acagcatgct gccggcggtg gcggccaatg gtttgccggt gatggccatc
     1321 catttcttgc cgtgtaatac cggcttttgg gtgggctgac cttatattgt tgtaaccact
     1381 aaaaggcata agcatgccgt gagcaacctt ctcataaaca tttttggttt tataaacagc
     1441 aattgaaagg taatggaaat gagacgctga acgctattct gtcttgcgga aatgcggcca
     1501 gaagattcta ttcgtaacaa ccgttattcc gggtgcctct gccagccacc cgcacaaaaa
     1561 ttttttagca aatgtcaatt tctgccggag cgctgtgaat tattttcaac cctctttaaa
     1621 ttgaatggac tgcatgaaaa aatcattctt cctattgctg gctattgccg gtttcttttg
     1681 tttcggtttt gctcaaaccg gcgttgctcc cagggtcaaa accaaatacg gcgagttgga
     1741 aggcgtgtat gcttccggta tcagcatttt cagaggtgtc ccatttgcgg cgcccccggt
     1801 aggacagtac cgttggcggg agccacaacc cgtgaaaccc tggacagggg taaaaaaagc
     1861 caaccagttt ggcccccgtg ccatgcaact gcccattttt ggtgatatga attttcgttc
     1921 gaacggagta agtgaagatt gcctgtacct gaacatttgg acacccaatg ccggcaatac
     1981 tgccgagctg cctgtgctgg tttatttcta cggcggcggt tttatggcag gtgatggcag
     2041 tgagccccgt tatgatggag agagcatggc ccgcaatgga atcgtagcca ttactgtgaa
     2101 ctaccgcctc ggcgtgtttg gttttatggc gcatcccgaa ctcaccaggg aatccccctt
     2161 tcatgcatca ggcaattacg ggttgctgga ccagagcgct gccctgcaat gggtgcaaca
     2221 gaatattgcc gcttttggtg gtgatcccaa acgcatcacc attgccggcg aaagtgcagg
     2281 atcgtggtcg gtgagcgccc agatggcatc gcc
//
LOCUS       DATIQF010000801         2428 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_301706,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000801 DATIQF010000000
VERSION     DATIQF010000801.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2428
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301706"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..306)
                     /locus_tag="VLL95_13775"
     CDS             complement(<1..306)
                     /locus_tag="VLL95_13775"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HSR39978.1"
                     /translation="MQVVIYRNQGSGGSVNYVVGSTLVSGGECYQTAMGDVDGDGRTD
                     ISVVNRYQNSIAVFRNSSLNSGLSFEPPVIVPTGQWPMSLKMGDLDKDGKPDFLVSHT
                     "
     gene            complement(331..1137)
                     /locus_tag="VLL95_13780"
     CDS             complement(331..1137)
                     /locus_tag="VLL95_13780"
                     /inference="COORDINATES: protein motif:HMM:NF013955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FG-GAP-like repeat-containing protein"
                     /protein_id="HSR39979.1"
                     /translation="MKGTILRGVSKRINIQCNGFLKFFSFKYILWIVNLFGANAALYA
                     QPIIQSFSPLTGPVGTSITIQGSGFSAIPSQNRVMIGGIVTPVIAASSNSLTVQAPTG
                     ADWRNITVSIDGLIGYSKQPFIVTYPADYSSLDRSQFDPDLDLPVKGVTGCETTGDLD
                     GDGKPELVMGLPNRGGLLINRNTSVPGAIQLSDTLFYTTYPGISNVICADLNGDGWLD
                     LAGSHESQRRIMILINKGNGNIDFEPAIAISTSDKPRFLAAGDLNQDGRV"
     gene            complement(1259..>2428)
                     /locus_tag="VLL95_13785"
     CDS             complement(1259..>2428)
                     /locus_tag="VLL95_13785"
                     /inference="COORDINATES: protein motif:HMM:NF024603.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HSR39980.1"
                     /translation="EKQPNVEARLRNITIKIRDTLQPNTTYSIRFGNAIRDVNEGNAL
                     KSFSYVFSTGNYIDSMMLAGEVLNAETGMPDSTLVVMLHKSADDSAVAKEKPQFITRP
                     NGKGRFVFENLPPGNFYLFALKDEGMRRYSSNQTPFAFHGEQVNTAKTNDSILLRSFV
                     AEKEVEKKTGQAAGGAAGVPAKKKDEKPVLRITASASKTQDQDLLSPLTFSFSLPIKS
                     FDSSLLQFSDTNNVAIKNYTLQLDTSATKLVLTHAWKDDSYYKIIYPKNFASDSAGNG
                     NARGDTILFSTKKESEYGAVRLTISGIDFAKKPLLQWVQNDAVVKSYALTGNKLNIPL
                     LAPGEYKLRVLYDENGNGKWDTGNYWKKKQPEYVLAVDQKINIRPNWENEITVEL"
BASE COUNT          603 a          587 c          540 g          698 t
ORIGIN      
        1 tgtatgtgaa accaaaaaat caggtttacc atccttatcg aggtcgccca tttttaaact
       61 catgggccat tgaccagtcg gcacaatcac aggtggttca aaagaaagac cagaattcag
      121 agaggaattt cggaaaacag caattgaatt ttgatagcga ttcacaacag atatgtcagt
      181 ccggccgtct ccatctacat cccccattgc tgtttgatag cattctccgc cgctaaccaa
      241 agtactgcca accacataat tgacagaacc gccgctgcct tggtttcggt aaattactac
      301 ttgcatgtcc aaaaagctag atgtaacaag ttaaacacgg ccatcttgat taaggtcgcc
      361 agcagccaag aaacgtggct tatcactagt ggatattgct attgctggtt caaaatcgat
      421 atttccattc cccttgttaa tcaaaatcat tatgcgccgc tgcgactcgt ggctacctgc
      481 caaatctagc caaccatccc cgttaagatc agcacagatt acattactta ttcccggata
      541 tgtggtataa aaaagtgtat cactcaactg aatggcgcca ggcactgagg tatttcgatt
      601 aatcaacaac ccgcctcgat ttggcaaacc cattaccagt tctggcttac cgtctccatc
      661 aagatcgccc gttgtttcac agccagtgac accttttaca ggcaagtcta aatcaggatc
      721 aaattgcgaa cgatcaaggc tactgtagtc tgctggataa gttacaatga atggctgttt
      781 tgaataccca atcagcccat ctatggatac ggttatgttt ctccaatcgg cgcctgtggg
      841 tgcttgaacg gtgaggctgt tggaagatgc agctattaca ggagttacaa tcccgcctat
      901 cattaccctg ttttgtgatg gaattgcgct gaaacccgaa ccttgaatag tgattgaagt
      961 ccctaccgga ccagtaagag gtgaaaaaga ctgaattata ggttgtgcgt aaagggcagc
     1021 atttgcaccg aaaaggttca ctatccaaag aatgtactta aatgaaaaaa actttagaaa
     1081 accattgcat tggatattta ttctctttga tactcccctc agtattgtgc ctttcatttc
     1141 ctagccattg ctttattgga ataattatag tgctgagtgg cagataattt ctgccctagc
     1201 ctaataatcg tcagatcggc tcgcaatata gattaaattg agagaaaatg agttgacgtc
     1261 acaattccac tgtgatttcg ttttcccagt tgggcctgat gtttattttt tgatccaccg
     1321 ccagcacata ctccggctgt ttctttttcc aatagttgcc ggtatcccac ttgccattgc
     1381 cgttttcatc gtacagcacc ctcagtttgt attcgccggg cgccagcaat gggatattca
     1441 gtttgtttcc ggttaatgcg tacgacttta ccacggcatc gttctgcacc cactgcaaca
     1501 acggtttttt ggcgaagtcg atcccggaga tggtcagtct taccgccccg tattcgcttt
     1561 cctttttggt gctgaacagg atggtatcgc cccttgcatt gccattgccg gcagagtcgc
     1621 tggcaaagtt tttgggataa atgatcttgt aataactatc gtccttccag gcgtgggtca
     1681 acacgagttt ggtggcactg gtgtccagtt gcaacgtata gtttttgatg gccacattat
     1741 tggtatccga aaactgcagc aggctgctgt cgaaagattt gatgggcagc gaaaagctga
     1801 acgtaagggg cgacagcagg tcctggtctt gtgttttgct ggcgctggcc gtgatgcgaa
     1861 gcacaggctt ttcgtccttc tttttggcgg gcacacctgc tgcgccaccc gccgcctggc
     1921 cggtcttttt ttccacttct ttctctgcca caaaagaccg cagcaaaatg ctgtcattgg
     1981 tttttgctgt atttacctgc tcgccgtgaa aagcaaatgg ggtttgattg ctgctatagc
     2041 gtcgcatgcc ttcatccttc agggcaaaca aataaaaatt gcccggaggc aaattctcaa
     2101 acacaaacct gcctttgcca ttgggccgcg ttatgaactg cggtttttct ttggccactg
     2161 ccgaatcatc ggcgctcttg tgcagcatta ctaccagcgt actgtccggc atgcccgttt
     2221 cggcattcaa tacttcgccg gccagcatca tgctgtcgat ataattgccg gtagaaaaaa
     2281 catagctgaa actcttcaag gcattgccct cgttgacatc gcggatggca ttgccaaagc
     2341 gaatgctgta ggtagtattg ggctgcaggg tgtctcttat tttgatggtg atattgcgca
     2401 gcctcgcttc aacattgggt tgcttttc
//
LOCUS       DATIQF010000802         4324 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_28070, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000802 DATIQF010000000
VERSION     DATIQF010000802.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4324
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28070"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..954)
                     /locus_tag="VLL95_13790"
     CDS             complement(<1..954)
                     /locus_tag="VLL95_13790"
                     /inference="COORDINATES: protein motif:HMM:NF014749.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39981.1"
                     /translation="MKNFISVYDVPSVEQLVQQALAYKADPFKDKALGANKRIGLLFL
                     NPSMRTRLSTQVAAANLGMEAIVFNVDKDGWKLEFEEEAIMSGDTVEHVKDAAPIMGK
                     YFDMLAIRTFPSLKNKEDDYSELYINQFIKYAGIPIVSLESATLHPLQSLTDIVTMTE
                     ALAKQPQQVRRPKVVLTWAPHVKPLPQCVANIFAQWVNAWKGPGGSGVDFVITHPEDY
                     ELDEKFTNGATITHDQEAALKDADFVYVKNWSTFNDYGRIYTNDPSWMLTTDKLTNDA
                     KVMHCLPVRRNVELSDEVLDSTNSIVTQQASNRVWAAQAVLA"
     gene            complement(1008..2165)
                     /locus_tag="VLL95_13795"
     CDS             complement(1008..2165)
                     /locus_tag="VLL95_13795"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSR39982.1"
                     /translation="MKLFDVYPLNDITIERAAGSYVWDSNGVQYLDMYGGHAVISIGH
                     THPHWVKRIEEQLHKIAFYSNSVRIPIQQQLAEKMGKVSGKEDFQLFLINSGAEANEN
                     ALKLASFHNGRKRIVAFSKSFHGRTSLAVAATDNPKIVAPVNETDNVIFLPFNDEAAL
                     QQCFDENGSEISSVIVEGIQGVGGIQEASASFLKLIRSLCDEHGAVYIADSVQCGYGR
                     SGQFFAHDIAGVNADIYTMAKGMGNGFPIGGILIAPHIKPAHGLLGTTFGGNHLACAA
                     ALAVLEVIEQENLVSKAAQMGQYLKNKLAKIDDLENLRGRGLMIGFDVPAELKDLRKV
                     LLNECFVFTGEAKPNVIRLLPSLALSRKQADEFVDALQEAIDLVKNAAAVE"
     gene            complement(2229..3212)
                     /gene="argC"
                     /locus_tag="VLL95_13800"
     CDS             complement(2229..3212)
                     /gene="argC"
                     /locus_tag="VLL95_13800"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: protein motif:HMM:TIGR01850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HSR39983.1"
                     /translation="MKIKAGIIGGAGYTGGELIRLLINHPQVELVFVQSGSNAGNPLH
                     KVHSDLIGETSLLFSAEHHFDIDVLFFCAGHGEAKKFVQSNNIPAQVKLIDIGNDFRL
                     RADAVQGERSFVYGLPELNRESIVTANNIANPGCFATAIQLGLLPLAQAGQLTDVYTT
                     GITGSTGAGQGLSATSHFSWRANNIQAYKTLTHQHLGEITESLVQINASGNAVPAVHF
                     VPWRGDFTRGIFISSTVKTDLSLDELYNRYEAFYAGAAFTHVTRSALFLKQVVNNNKC
                     VIQLEKEGDTLVVHSVIDNLLKGASGQAVQNMNLMFGFDEKAGLKLKSTYF"
     gene            complement(3298..3657)
                     /locus_tag="VLL95_13805"
     CDS             complement(3298..3657)
                     /locus_tag="VLL95_13805"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSR39984.1"
                     /translation="MSIGKTIIVSDTKPLQQYKWGNDCDAYVLVDEPQLNVKLEQMPA
                     GASELMHFHATVQQFFYVLAGEATMEIDKKMLALKKSEGVLIKPGAVHRIMNSGNETL
                     RFVVTSQPGVGSDRTNV"
     gene            complement(3706..>4324)
                     /locus_tag="VLL95_13810"
     CDS             complement(3706..>4324)
                     /locus_tag="VLL95_13810"
                     /inference="COORDINATES: protein motif:HMM:NF044952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39985.1"
                     /translation="NSKEWLPEEAWPTQVTATGKELVELSFEKGQLVGVNGENFDHPV
                     DAINKLHSIAAPYGVGRDIHVGDTIIGIKVRVGFEAAAPMIIIKAHHLLEKHVLTKWQ
                     LNWKDQLALFYGNWLHEGQILDPVMRNMEAFFESTQQKVTGKVNVQLQPYHFQVTGIE
                     SEYDLMSSKFGKYGEMNTGFTGEDVRGFSKIFGNQTVIWHKVNEE"
BASE COUNT         1051 a         1106 c          974 g         1193 t
ORIGIN      
        1 agctaacact gcctgtgcag cccaaaccct gtttgatgcc tgctgcgtaa caatgctgtt
       61 ggtactatcc aacacttcat cactcaattc aacattcctt ctgaccggca agcaatgcat
      121 cactttagca tcgttagtta atttatcggt tgtgagcatc catgatggat catttgtata
      181 gatcctgcca tagtcattga atgtgctcca gttctttaca tacacaaagt ctgcgtcctt
      241 caaggccgct tcctggtcgt gggtaatggt agcaccgtta gtaaacttct catccaattc
      301 gtaatcttcc ggatgtgtga tcacgaagtc aacaccacta ccaccggggc ctttccatgc
      361 atttacccat tgtgcaaaga tgttggctac gcactgcggc aaaggcttta catgtggcgc
      421 ccacgtgagt acaacttttg gcctccgaac ctgttggggt tgttttgcca atgcttcggt
      481 catggtcaca atatcggtga gcgactgcaa gggatgcagc gtggcgcttt ccaaactcac
      541 aatggggatg cctgcgtatt tgatgaactg attaatgtac aactcgctgt aatcatcctc
      601 tttattcttg agcgatggaa aagtgcgaat ggccagcatg tcgaaatact tgcccataat
      661 gggcgccgca tcttttacat gctccaccgt atcgccactc atgatggctt cttcttcaaa
      721 ctccagtttc cagccatcct tgtctacatt gaaaacgatg gcttccatac ccaggttagc
      781 agcagctacc tgtgtgctca ggcgggtacg catggaagga ttcaggaaca acaacccaat
      841 gcgcttgttg gcacccaatg ccttgtcttt aaaaggatct gccttgtagg ccaacgcttg
      901 ctgcaccagc tgctctacag aaggaacatc gtaaacagaa atgaaatttt tcatgttgtt
      961 caggctgact gtatgaaaga aggattgtaa actattacta cttgtaccta ttccaccgcg
     1021 gcggcattct tcaccagatc aatggcctct tgcaatgcat ccacaaactc atcggcttgc
     1081 ttgcggctca gggccagtga aggcagcaac ctgatcacgt tgggttttgc ttcaccggta
     1141 aacacaaagc attcattcag cagcaccttg cgcaggtctt tcaattctgc gggcacatca
     1201 aatccaatca tcaaaccacg gcctctcaag ttttcgaggt catcaatctt ggccagtttg
     1261 tttttgaggt attgtcccat ctgcgcagcc ttgctcacca ggttttcctg ctcaatcact
     1321 tccagcacgg ccaatgccgc tgcgcaagcc aggtggttgc caccaaaagt agtgcccagc
     1381 aaaccatgtg ccggcttgat atgtggcgca atcagaatgc ccccaatggg gaaaccattg
     1441 cccatgccct tggccatagt atagatatca gcatttacac ctgcaatatc atgtgcaaag
     1501 aactgaccgc tgcggccgta tccacattgc acactgtcag caatataaac agcgccatgc
     1561 tcatcgcaca aggaacggat cagcttaagg aaagaagcac tggcctcctg tatgccgccc
     1621 acgccttgta tgccttccac aatcactgat gaaatttcgc ttccattttc atcaaagcat
     1681 tgctgcaaag cggcctcatc attaaaaggc aggaagatga cattgtcggt ttcattcacc
     1741 ggcgccacga tctttggatt gtcggtagct gcaacggcca gcgacgtacg gccatgaaaa
     1801 ctcttgctga acgcaacgat ccttttgcgg ccgttgtgaa aggatgccag cttcaacgca
     1861 ttttcgttgg cctctgcccc actgttgatg agaaagagtt ggaaatcttc cttgccactc
     1921 acttttccca ttttctctgc cagctgttgt tgaatgggaa tgcgcactga attggaatag
     1981 aaagcgatct tatgcagttg ttcttctatc cgcttcaccc aatgcggatg cgtgtgacca
     2041 atgctgataa ccgcatggcc gccatacata tcgaggtatt gcacaccgtt gctgtcccat
     2101 acataactgc cggcagctct ctcaatggtg atatcgttaa gcggataaac gtcaaaaagt
     2161 ttcataaaag attgttttga atggaaccac aaaggcacgg ggaaggtgca aagggcgcaa
     2221 tgagtaggtt agaaataagt tgatttaagt ttgagtcctg ctttttcatc aaagccaaac
     2281 atcaggttca tgttttgaac agcctggccg ctggccccct tcagcaggtt atcgattaca
     2341 gaatgaacaa ctaacgtatc gccttccttt tccagttgta tcacacattt gttgttgttg
     2401 actacctgct tcaagaaaag agcagatcgg gtaacatgtg tgaaagcggc accagcataa
     2461 aacgcttcat acctgttgta caattcatcg agcgacaaat ctgtcttgac tgtagaagaa
     2521 ataaaaatgc cacgggtaaa atcaccacgc cagggaacga aatgaacggc aggcacagca
     2581 ttaccgctgg cattgatttg caccaacgat tctgtgatct ctcccaaatg ctgatgggta
     2641 agtgttttgt aagcctggat attattggca cgccagctga aatgcgaagt agcgcttaag
     2701 ccctggccgg ctcctgtgct gccagtaatg cctgtagtgt acacatcagt cagttgccct
     2761 gcctgggcca atggcagcaa tcccaattgt atggctgtgg caaaacaccc ggggttggca
     2821 atgttatttg cggtgacgat gctttcccga ttcaattctg gcaggccata cacaaatgac
     2881 cgttcgccct gcacggcatc tgcacgcagc ctgaaatcat tgccaatgtc aatcaacttt
     2941 acctgtgcgg gaatgttgtt tgactgcaca aacttctttg cttcgccatg accggcacag
     3001 aagaaaagca catcaatatc aaaatgatgt tcggcggaaa aaagcaggct ggtttcgcca
     3061 atgagatcgc tgtgcacttt gtgcaaggga ttgccggcat tgctgccgct ctgcacaaat
     3121 accagttcaa cctgcggatg gttgatgagc aaacggatga gctcaccacc agtatatcct
     3181 gcgccgccta taatgcctgc ttttattttc atggtttgct agatgtttgt ggtttgatgt
     3241 ttgttgttct tcctggcttg gtttgactgg gcctgtaatc atagcaggca acattcatca
     3301 gacatttgtc cgatcgctgc caacgccggg ttgactggtc actacaaagc gaagtgtttc
     3361 gttgccgctg ttcatgatgc gatgcacggc accgggtttg atcaacacgc cttcactctt
     3421 tttcaatgcc agcatttttt tgtcaatctc catcgtagcc tcgccggcca aaacatagaa
     3481 gaattgttgt acggtagcat ggaaatgcat gagctcgctg gctcctgccg gcatctgctc
     3541 cagtttcaca tttagctgtg gctcgtccac caacacataa gcgtcacaat catttcccca
     3601 cttatattgc tgcagtggtt tcgtgtctga tacgattatg gttttgccta tactcaagtt
     3661 tttgaaaatt agatttttga acgaaagggc atctaacaca tgctgttact cttcattcac
     3721 cttatgccag atgacagtct ggttgccaaa tattttggag aagccgcgaa catcttcgcc
     3781 ggtgaaaccg gtgttcattt cgccatactt gccaaacttg ctgctcatca ggtcgtattc
     3841 gctttcaata cctgttacct ggaagtgata aggttgtaac tgcacattca ctttgccggt
     3901 caccttttgc tgcgtgcttt caaagaaagc ttccatgttg cgcataacgg ggtcaagaat
     3961 ttgtccttcg tgcagccagt tgccatagaa aagcgccagt tggtctttcc agttgagctg
     4021 ccacttggtg agcacatgtt tttccagcaa gtgatgcgct ttgatgatga tcataggcgc
     4081 cgccgcttca aagcccaccc ggaccttgat gccaatgatg gtatcgccca cgtgtatatc
     4141 gcggcccaca ccatatggcg ctgctatgct gtgcagttta ttgatggcat ctaccgggtg
     4201 gtcaaagttt tcaccattca ctcccaccag ttgccccttt tcaaatgaaa gttccactag
     4261 ttctttgccg gtggctgtca cttgtgttgg ccatgcttct tccggcagcc attcttttga
     4321 attg
//
LOCUS       DATIQF010000803         1570 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_240945,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000803 DATIQF010000000
VERSION     DATIQF010000803.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240945"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..353
                     /locus_tag="VLL95_13815"
     CDS             <1..353
                     /locus_tag="VLL95_13815"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR39986.1"
                     /translation="AIHFIKSLDEQMFFSPIIALNAFRIAQEALSNALLHSKASEVTL
                     RMTQQDDNSLRIEIAYNGNGIAAADWKKEEHYGLENMQRRSAEHQLNLEIDTMVGKGT
                     QLRFVLPAKSENSA"
     gene            402..1079
                     /locus_tag="VLL95_13820"
     CDS             402..1079
                     /locus_tag="VLL95_13820"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR39987.1"
                     /translation="MLKIAIVDDMPNIRQMIRQKLAAQPDVLVLFTASNGRDFLEKMK
                     TDESGEMPDVVLMDLDMPELNGIETIAHASVLYPDVRFLVLTVFDDDEKIFDAIKVGA
                     GGYLLKDDKLTDIVAALQELVEFGGVPMSPQVARKALRMLSQAQLPAVSNDTSVSQKG
                     AGFDLTKREIEILSLMVDGKDSNEIASQLFLRVHTVRKHIANIYNKLHVCSRVQAIKV
                     AIKNNWV"
     gene            1197..>1570
                     /locus_tag="VLL95_13825"
     CDS             1197..>1570
                     /locus_tag="VLL95_13825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39988.1"
                     /translation="MNREITSWYSPSLGEEMPIAAYGHYGPALLLVPTAGADFLEYER
                     FQLMNDLENVVNAGKAKVFSVNSVNKQSWLNKEMEGPHKAIRHNQWNEYIFNEVVPFI
                     KSKTSPETPIIVSGASFGALHS"
BASE COUNT          455 a          354 c          393 g          368 t
ORIGIN      
        1 ctgccattca tttcatcaaa tcgcttgatg agcaaatgtt tttttcaccc atcattgcgc
       61 tcaatgcttt caggatagcc caggaagccc tgagtaacgc attgctgcac agcaaagctt
      121 cggaagtaac cctgcgcatg actcaacagg acgacaactc cttgcgtatt gaaattgcgt
      181 acaacggaaa tggcattgcc gcagcggatt ggaaaaagga agagcattat gggttggaaa
      241 acatgcaacg gaggtcagcc gaacaccaat tgaatctcga gattgacaca atggtcggaa
      301 aaggcacgca gctaaggttt gtactgccag ccaaatcaga aaatagtgca taatgattat
      361 agctgatgct ggcggttgcc tttactttag cttaccactt tatgctgaag attgccattg
      421 tagatgatat gcccaacatc aggcagatga tccgtcaaaa actggcggct cagccagatg
      481 tgctggtact ctttacggcc agcaatggca gagacttcct ggaaaaaatg aagacggatg
      541 aaagcggtga aatgccggat gtggtactca tggacctgga catgccggaa ttaaatggca
      601 ttgaaaccat cgctcatgcc tccgtgttgt acccagatgt tcgcttcctg gtactgacag
      661 tatttgacga cgatgaaaaa atttttgacg ccatcaaagt gggtgcaggc ggttacctgc
      721 tgaaggacga taaacttact gacatcgtag cggcgctcca ggaactggtg gagtttggtg
      781 gggtgcctat gagcccgcag gtggcccgca aggcgctgcg catgctaagc caggcacaat
      841 tgccggcggt aagcaatgac acctcagtga gtcaaaaggg tgcagggttt gatcttacca
      901 aacgtgaaat tgagatcttg tctcttatgg tggatggcaa agacagcaat gaaattgctt
      961 cccaactttt tctgagagta cacactgtac gcaagcacat tgccaatatt tacaacaaac
     1021 tgcatgtgtg cagccgggta caggccatta aagtggccat caagaacaat tgggtgtaaa
     1081 cttcagccaa attttgcgct gtaatgagcc tgaatacgca aaaccgcatt ctcctggcct
     1141 acttttgcag ggccattgcg aaaaatggcg tttattaagg ttttaaataa gcatgcatga
     1201 acagagaaat aacaagctgg tatagtcctt cgctgggcga agaaatgcca attgccgcat
     1261 acggacatta cggacctgcc ctgttgctgg tacctacggc cggcgctgat ttcctggaat
     1321 acgaacgctt tcagttgatg aacgatctgg aaaatgtggt gaatgccgga aaagcgaaag
     1381 tattcagcgt aaacagtgtg aacaaacaga gctggctgaa caaagaaatg gaagggcctc
     1441 acaaagctat ccgtcacaac cagtggaatg aatacatctt caacgaagta gtgcctttca
     1501 tcaaaagcaa aacctctccc gaaacgccca tcatcgtgag tggtgcctcc tttggggcat
     1561 tgcacagcat
//
LOCUS       DATIQF010000804         6394 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_134503,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000804 DATIQF010000000
VERSION     DATIQF010000804.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6394
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134503"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..341
                     /locus_tag="VLL95_13830"
     CDS             <1..341
                     /locus_tag="VLL95_13830"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: protein motif:HMM:NF013222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HSR39989.1"
                     /translation="PVAGKQSFFEDVWEVVKLVPRGRVTTYGAIAAYLGTKMSARMVG
                     WTMNAAHQVAGVPAQRVVNRNGMLSGKAHFGTPTRMQELLKADGVLVENDTVVNFSQL
                     FWDPAKELGL"
     gene            complement(354..938)
                     /locus_tag="VLL95_13835"
     CDS             complement(354..938)
                     /locus_tag="VLL95_13835"
                     /inference="COORDINATES: protein motif:HMM:NF016153.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF420 domain-containing protein"
                     /protein_id="HSR39990.1"
                     /translation="MLAASIKKNDRQARWLIGIFSVVVFIVVVLLGKIKLDVDPGFDV
                     HLFATANAAINSLIAVLLLLALVAVKNGRYQLHKKLMMGALVLSIVFLLSYIAHHLLA
                     GDTRFGDTNFDGVLDEAEKTAAGAMRMVYFVILLTHIFLAAVILPFILFTAYRALTAE
                     FPQHKKLARITWPLWFYVAVTGPVVYLMISPYYH"
     gene            complement(1006..1815)
                     /locus_tag="VLL95_13840"
     CDS             complement(1006..1815)
                     /locus_tag="VLL95_13840"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HSR39991.1"
                     /translation="MNKTAWWGLAIALFLPIGSYLLVKGLGEDAVNMPPRFFADSVVE
                     NVKDGKTTFDTVWHRIPDFTYTNQLGQPLSLHDLDGKILVVNTFFTRCPNICPGLTRN
                     IKGLQKSFENPKRKKFGDTSVVYFLSFSIDPQRDSVEALKRWADRFFVNSDSWSLLTG
                     PKDDIYSLMLNEFKLATEHGGNVDSNFIHSEKVMLVDRNRVIRGYYNGLDSASLASLA
                     EDIGKLYLEKDKSRPSIFRQYIPLIPVLATIPLILMVVMWVLNRNRRKEKF"
     gene            complement(1945..2373)
                     /locus_tag="VLL95_13845"
     CDS             complement(1945..2373)
                     /locus_tag="VLL95_13845"
                     /inference="COORDINATES: protein motif:HMM:NF015582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C oxidase subunit IV family protein"
                     /protein_id="HSR39992.1"
                     /translation="MSQSPASSEISFVSHHDDSHFYKTVKKVTIILSIVTIIELALGL
                     LIYKVGHGSHTTVLIIKGVVTILSLAKAFYITSYFMHLGDEIRNFIMTIVVPLLLFVW
                     FIAAFLIDGNSWRNLRNTDAGSRADKTEQVEKAVLPGADK"
     gene            complement(2425..3168)
                     /locus_tag="VLL95_13850"
     CDS             complement(2425..3168)
                     /locus_tag="VLL95_13850"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HSR39993.1"
                     /translation="MATAAIPAGTKWWNGGKSPFNLSYGKMMMWYFLMSDAFTFGAFL
                     ISYGTIRFSANYWPDPNHVFNAFPGMGHANLPLAFVSLMTFILIISSVTMVLAVHEGH
                     KMNRKGVEKYMLWTIIGGLAFLACQAWEWTHLITGDHLVLVNGEVVPMGTTVTQNPWG
                     PESGVMHDGHMVNSPGPVAFGGFFFGITGFHGFHVLSGVVINLIMYIKTRLGHFDQRG
                     HYEMIEKAGLYWHFVDLVWVFVFLCFYLI"
     gene            complement(3308..3871)
                     /locus_tag="VLL95_13855"
     CDS             complement(3308..3871)
                     /locus_tag="VLL95_13855"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HSR39994.1"
                     /translation="MTAENKKIHPYKFTLWVAMGSIVMMFAGLTSAYIVKRNQANWQG
                     FDLPAIFSYSTIVIVLSSVTMQLALKNFRQRNMAAYRQFMVVTVVLGLAFIAMQWTGF
                     EQLHERGIKLIGQGSNVSGSFLAVIAGLHMLHVAGGVVALAMMLGNAFAGKSRNYSPV
                     PVEVAAQYWHFVDLLWIYLFAFLHFVS"
     gene            complement(3890..4753)
                     /gene="cyoE"
                     /locus_tag="VLL95_13860"
     CDS             complement(3890..4753)
                     /gene="cyoE"
                     /locus_tag="VLL95_13860"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: protein motif:HMM:TIGR01473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HSR39995.1"
                     /translation="MPATSRLKDYLQLIKFTLNITVVFSSVISYLLVPNIAFNLKMVL
                     LLTIAGLLVTGSANAINQIYEKDSDAVMKRTGKRPIAAGRMTVQEAWFFALLAGAVGV
                     WIMWYFFNLAAALLSLLSLFVYGFIYTPLKKVSAISVFIGGFPGAFPCLIGWVAGADG
                     FTAGGWVLFAIQFLWQFPHFWAIAWVAHADYTRAGFKLLPNQNEPTRNTALQAIGYAV
                     VMIPLGFLPNLVGMTGVVSMWLVLAANLAMVVQCVRLYREMDVKAARRVMFSSYIYLP
                     VVLISLLADKI"
     gene            complement(4855..>6394)
                     /locus_tag="VLL95_13865"
     CDS             complement(4855..>6394)
                     /locus_tag="VLL95_13865"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HSR39996.1"
                     /translation="PDFYYALVTMHGTILVFFVLTAGLSGTFANLLIPLQIGARDMAS
                     PMLNMLSYWFFFLASIVMIASLFIQTGPFSGGWTAYPPLSAVGDMSPGSKLGVDLWIT
                     AMALFVVSSLLGGLNYIATILNMRTKGMSMTRLPLTIWAFFFTAVLGVLSFPVLFSGF
                     ILLLFDRNLGTSFYLSEIYVQATQQALPNEGGSAILFQHLFWFLGHPEVYIILLPAMG
                     MASEIISTNARKPIFGYMAMVGSMFAIAILAFLVWAHHMFVTGLNPFLGAFFVLLTLL
                     IAVPSAIKVFNWLTTIWRGNIRFTPAMMFALGFVSLFISGGLTGIFLGNSALDIHLHD
                     TYFVIAHFHIVMGVASFFGMFAGVYHWFPKMFGRYMNNTLGYLHFWGTIICAYIIFWP
                     MHYEGLAGMPRRYYDYSQWQSFKQFGDLNVVITIAAIISFALQLIFVFNFFYSIFKGR
                     KVTNPNPWGSNTLEWTTPINPGHGNWPGEIPEVYRWAYDYGKDGKDFIPQTTPVGADE
                     SEHH"
BASE COUNT         1799 a         1574 c         1608 g         1413 t
ORIGIN      
        1 gacctgtagc agggaagcag agtttttttg aagatgtgtg ggaagtggtg aaactggtac
       61 cccgcggccg ggtcaccacc tacggcgcta ttgccgccta cctcggtaca aaaatgagtg
      121 cccgcatggt tggctggacc atgaatgcag cgcaccaggt agccggtgtg ccggcgcaac
      181 gggtggtaaa caggaacggt atgctcagtg ggaaagcaca ctttggaacc cctacccgca
      241 tgcaggaatt gcttaaagct gacggcgtac tggtcgaaaa cgacaccgtg gtcaatttct
      301 cccaactgtt ttgggatccg gccaaggaac tgggattgtg aggcccgctc taactagtgg
      361 taataggggc tgatcatgag atacaccact gggcctgtaa cagccacata gaaccacaag
      421 ggccaggtga tccgtgccag ttttttgtgc tggggaaact cagctgtaag cgccctgtag
      481 gccgtgaaca gtataaacgg caggatgaca gcagcaagga aaatatgggt gaggagaatg
      541 acgaaataca ccatgcgcat agcaccagct gcggttttct cagcctcatc aagcacgcca
      601 tcaaaattgg tatcgccaaa acgggtatcg cctgccagca aatgatgggc gatataggaa
      661 agcaggaaaa cgatgctgag caccaatgct cccatcatga gttttttgtg cagctggtac
      721 ctgccgttct tcaccgccac cagagccagc agcaacagca cagcgatcaa ggagttgatt
      781 gccgcgttgg ccgtagcaaa caagtgtaca tcgaaacccg ggtccacatc cagttttatt
      841 tttccgagca gcaccaccac gatgaatact accacggaaa atattccaat caaccagcga
      901 gcctggcggt catttttctt aatgcttgca gctaacattt tttacttgtt ttcactggtg
      961 taaacgatca ggcgtgcctg atggttgaat cgcaaatcac tgaacttaga atttttcctt
     1021 ccttctgttc cggttgagca cccacattac caccatcaat atgagcggta tggttgcaag
     1081 caccgggatc aaaggaatgt attgcctgaa aatggaaggc cggcttttgt ccttttcaag
     1141 atagagtttg ccaatgtctt ctgccagcga tgccaacgag gcactgtcga gaccgttgta
     1201 ataaccacgt atcacacggt tgcgatccac cagcatcacc ttttcagaat gaatgaaatt
     1261 cgagtcaaca ttgccaccat gttccgttgc caatttgaat tcattcagca tcagtgagta
     1321 gatatcatcc tttgggcccg tcagcaaact ccaactgtcg ctgttcacaa aaaaacgatc
     1381 ggcccaacgc ttcagcgctt ccacgctgtc gcgttgcgga tcaatgctga aggaaagaaa
     1441 atatactacc gaggtgtcac cgaatttttt acgtttcgga ttttcaaacg acttctgcaa
     1501 ccctttgata ttccgggtaa gcccggggca gatattggga cagcgggtga aaaaggtgtt
     1561 caccaccagg atcttcccgt caaggtcgtg caacgaaagg ggctgcccca gttggttggt
     1621 ataagtgaaa tcgggaatgc ggtgccaaac ggtatcgaat gttgtcttac catccttcac
     1681 gttttcaacc acagagtcgg caaagaatct ggggggcata ttgacagcgt cttcacccaa
     1741 cccttttacg agaaggtaac tgccaatggg cagaaataat gcgatcgcca gtccccacca
     1801 tgctgtttta ttcatgggcg caaaggtaac agtgtcacat tcaaaatgag ggtttgatga
     1861 accaggcaaa cagatttaac gacaaacaaa aagccgcccg gatacggacg gctttcgtaa
     1921 atatttcaac ggtgattgaa caaatcactt gtcagcgccg ggtaataccg ctttctcaac
     1981 ttgttcagtt ttgtcagccc ttgagcctgc atccgtattg cgaaggttcc tccagctatt
     2041 tccatcgatg aggaaagcag caatgaacca tacaaacaac agcaggggca ctacaatggt
     2101 catgatgaag ttgcggatct catcgcccag gtgcatgaaa taagaagtaa tgtagaatgc
     2161 cttggccaat gacaggatgg taaccactcc tttgatgatg agcacagtgg tgtggctgcc
     2221 atggcccacc ttgtaaatga gcaaaccaag ggccagctca atgatggtaa caatagaaag
     2281 tatgatggtt actttcttta ccgttttata aaagtgcgaa tcgtcgtgat gcgatacgaa
     2341 agagatttct gaagaagcag gagattgact catattaaaa tcagttgacg gttgatagtt
     2401 gacggttgac cgaaacgatt gcttttagat aagatagaag caaaggaata cgaataccca
     2461 aaccaggtct acaaagtgcc agtaaaggcc ggctttttca atcatctcat aatgaccacg
     2521 ctggtcgaaa tgacccaggc gggttttgat gtacatgatc aggttgatga ctacaccact
     2581 gagtacgtgg aaaccgtgga aaccggtgat gccaaaaaag aatcctccga aggcaacggg
     2641 tccgggggaa tttaccatat gcccatcatg catcacccct gattcaggac cccaagggtt
     2701 ctgggtaacg gtggtaccca tgggcaccac ttcgccattt accaatacaa ggtggtcgcc
     2761 ggtgatgagg tgggtccatt cccaggcctg gcaggccagg aacgccaaac caccgatgat
     2821 ggtccagagc atgtatttct ctacaccctt gcggttcatt ttgtgtcctt catgtaccgc
     2881 cagcaccatc gttaccgaac tgatgatgag gataaaggtc atcaggctta caaaagccag
     2941 aggcaggttg gcatggccca taccagggaa tgcattgaac acgtggttgg gatcgggcca
     3001 gtagttggcg ctgaaacgaa tggtgccata actgatcagg aaggcgccga atgtaaaggc
     3061 gtcactcatc aggaaatacc acatcatcat tttgccatag ctcaggttga aggggctctt
     3121 gccaccgttc caccatttgg tgccggccgg aattgctgct gttgccataa gtaattagta
     3181 gtgctgaaat ttagaacgtc gcaaaaataa gcggacgagg tataaaagtc atcgaatggt
     3241 caaaagaatt ttagcccttc aaacacaagg ccttcagggc tttgaaacgt gtcaacccgt
     3301 ccgggtatca actgacaaaa tgcaggaacg cgaagaggta aatccaaagc agatcaacaa
     3361 aatgccagta ttgggcggct acttcaactg gaacagggct gtagtttctc gattttccgg
     3421 caaatgcatt gcccagcatc attgccagcg ccaccacgcc ccctgccaca tgcagcatgt
     3481 gcaggccggc aataaccgcc aggaatgagc ccgatacatt gcttccctgt ccaatcagtt
     3541 tgatgcctct ttcgtgtagt tgttcaaacc ctgtccattg catggcaata aatgccaagc
     3601 ccagcaccac agtcaccacc ataaactggc ggtaggctgc catattgcgc tgcctgaagt
     3661 ttttgagcgc caattgcatg gtcacactgc tcagaacaat gacgattgtg ctgtaagaaa
     3721 agatcgccgg caaatcgaag ccctgccagt tggcctggtt tctttttacg atataggcac
     3781 tggtaagacc cgcaaacatc atcacaatgc ttcccatggc cacccacaag gtgaacttgt
     3841 aggggtggat ctttttgttt tctgcagtca tagttgccat attttacttt caaattttat
     3901 ctgccaaaag actaatcaat accactggca ggtagatgta gctgctgaac attacccggc
     3961 gggcagcctt tacatccatt tcgcggtaca gcctcacaca ttgtaccacc atcgccaggt
     4021 tggctgccag taccagccac atactcacaa cacccgtcat gcccacaagg ttgggcaaaa
     4081 acccgagcgg tatcattacg acggcgtaac caatggcttg caatgccgta ttccgtgttg
     4141 gctcgttttg attgggcagc aatttgaacc cggccctcgt atagtcggca tgcgccaccc
     4201 aggctatggc ccagaaatgc ggaaactgcc agaggaactg gatggcaaaa agcacccagc
     4261 cgccggcggt aaagccatcg gcacctgcca cccagccaat gagacaggga aaggcaccgg
     4321 gaaagccgcc gatgaaaaca gaaatggcac tcactttttt cagcggcgtg taaatgaaac
     4381 cgtatacaaa caaactgagc aatgaaagca gggccgccgc caggttgaag aaataccaca
     4441 tgatccaaac acccaccgca cctgccagca gtgcaaaaaa ccaggcttcc tgcacagtca
     4501 tgcggccggc ggcaatgggt cgcttgccgg tacgcttcat taccgcatca gagtcctttt
     4561 cgtaaatctg gttgatggca tttgcactac ccgttaccag caagccggca atggtgagca
     4621 acaaaaccat tttcaggttg aatgcaatat tgggcaccaa caggtaactg atcacactcg
     4681 agaacactac tgtaatattc agtgtgaact tgatgagttg caaatagtct ttgagtcggg
     4741 aagtagctgg cattactctt tctaaaaacc ctgctggttt tgggtccgca aatgtattgg
     4801 caaaaaaaca gccccggcga aaccggggct attttctgaa aatattctca acgattaatg
     4861 atgctcagat tcgtcggcac caaccggtgt ggtttgagga atgaaatcct tgccgtcttt
     4921 gccgtagtca taagcccaac ggtatacttc aggaatttcg ccaggccagt tgccgtgacc
     4981 aggattgatg ggagtagtcc actccagcgt attcgaaccc catgggttgg gattggtaac
     5041 cttacggcct ttgaagatgc tgtagaagaa gttgaacacg aagatcaact gcagggcaaa
     5101 actgatgatg gctgcaatgg tgatcaccac gttcaaatcg ccgaactgct tgaacgactg
     5161 ccactggctg tagtcgtaat agcgacgtgg cataccggca aggccttcat agtgcatggg
     5221 ccagaaaatg atgtaggcgc aaatgatggt tccccagaag tgcagataac caagggtgtt
     5281 gttcatgtag cgaccaaaca tcttcgggaa ccaatggtat actcctgcaa acatgccgaa
     5341 gaaactggcc acacccatta caatgtggaa gtgggcaatt acgaaatagg tgtcgtgcag
     5401 gtgaatatcc aaagcagagt taccaaggaa gataccggta agaccaccac tgatgaagag
     5461 gctaacaaag ccgagggcaa acatcatggc tggcgtgaaa cggatattgc cgcgccaaat
     5521 ggtagtgagc cagttgaata ccttgatggc agaaggtacc gcaatcaaca aggtgagcag
     5581 cacgaagaag gcacccagga agggattgag acccgtaaca aacatgtggt gtgcccatac
     5641 caggaaggcg agaatggcaa tagcgaacat ggaacccacc atcgccatgt aaccaaagat
     5701 cggcttgcgg gcattggtag atatgatttc tgaagccata cccatggcag gcaacagaat
     5761 gatatacact tcagggtgac ccaggaacca gaacaggtgc tggaaaagga tggcggaacc
     5821 accttcgttt ggcagagcct gctgggtagc ctgtacataa atttcgctca ggtaaaagct
     5881 ggtgcccagg ttgcggtcga acaacagcag gatgaaaccg ctgaacaata ccgggaaact
     5941 caatacgcca agtacagctg taaagaagaa cgcccaaatg gtcaaaggca aacgggtcat
     6001 gctcatgcct ttggtgcgca tgttcaggat ggtagcgatg tagttgagac ctcccaacag
     6061 tgagctcacc acaaagagag ccatggcagt gatccacaaa tcaacaccca actttgaacc
     6121 cgggctcatg tctcctactg cactcaacgg aggatacgct gtccatccgc cactgaaagg
     6181 accggtctgg ataaacaggg aagcaatcat cacaatgctg gcgagaaaga agaaccagta
     6241 gctgagcata ttcagcatgg ggctggccat atcgcgggca ccgatctgca ggggaatgag
     6301 caggttcgcg aatgtaccgc tcaagcctgc cgtcaacaca aagaatacga ggatggtacc
     6361 gtgcatggtc accagcgcgt aatagaaatc ggga
//
LOCUS       DATIQF010000805         1518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_301751,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000805 DATIQF010000000
VERSION     DATIQF010000805.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301751"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(249..1303)
                     /locus_tag="VLL95_13870"
                     /pseudo
     CDS             complement(249..1303)
                     /locus_tag="VLL95_13870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611560.1"
                     /note="programmed frameshift; incomplete; partial in the
                     middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(1321..>1518)
                     /locus_tag="VLL95_13875"
     CDS             complement(1321..>1518)
                     /locus_tag="VLL95_13875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR39997.1"
                     /translation="ENAALTETILANQALLNERIAVFDRGITARAKYDLFTENQIHFI
                     SRINPDVGGPKIRQLIIRVSV"
BASE COUNT          344 a          333 c          333 g          508 t
ORIGIN      
        1 ataccggttg gtgattactg tagtatcatc agtaaattta taagatagac ctgtggagtc
       61 cttatgtaag cggaccttat tttcggtcag ttcgaaagta gaggtttcgg gttgttgtta
      121 gtgctttttg gattgacttt attcactaaa cggctctctt caatttttgg ctgatttccg
      181 ttcgccgttt gtgaataaag tcgcgatgat gatgtggtgt tggatgcatg cttggtagca
      241 taacggacgg gtgacaggta accaagtgct ttgtgtggtc gctcttcatt gtaatcaatg
      301 cgatattctt cactcatggt tcttacttct ggcagacttt gaaaaatgta tgccttcaat
      361 aattctctgc gcatggagcc atttttgcgt tcaataaatg cattctgtgt gggcttgcct
      421 ggctggatgt attgtaagct gatgcccttt tcttcgcacc attgctgaag ttgatgactg
      481 ataaattcag ggccattatc agtacgaata cacataggct tgcctctttc gttaatcact
      541 ttactcagtg tgcgaatgac tcgtaatgat ggtaatgagg tgtctgcttc aatggccagt
      601 gattcacgat tgaagtcatc catgatgttg agtatcctga acttacggcc atcggccagg
      661 ctatcgctca taaaatctat gctccacatt tgattaagtg cggttggaat agtcaatggt
      721 tgtttcacac gctcaggaag cctcttttta gcccttctgc gtatgtgcaa acccatggct
      781 ctgtacaccc tgcgcaggcg cttatggttc caggcaaagc ctctgttgcg caatctgtag
      841 tacgattgcc agaaccctat gctgggatgc ctggttgtta cctgtgtaag cgcatcttgt
      901 aaagcactat catctttcgg aacagcctta tattgaaaac tactacgtgg cagttgcacc
      961 atcttgcacg ccttgctgac actgcactgt tccacctcaa ccaggtgttg aacagcttct
     1021 cttttctcag caggcgttat tgcttttttt caagatagtt tttgatggct ctgttttcaa
     1081 aagtcagctc tgctacaatc ttcttgtatt cgcgaagctc cgcttccata tcccgaagct
     1141 tcttcaaatc actagcctcc atacctccgt acttggcctt ccagttataa aacgtggctt
     1201 cgctaatgcc caattcgcgg gtaacttctt taacggacat gccgttctcc tgcttcttga
     1261 tggcagccac aatctggctc tcggtaaatg tgctcttttt cattttttga cagtttaaaa
     1321 ttagacagat actctaatta ttaactgccg aattttgggt ccgcctacat caggattgat
     1381 tcttgagata aagtggattt gattttcagt aaacaaatcg tatttggcac gagcagtaat
     1441 gcctctatcg aaaactgcga tccgctcgtt gagtagcgct tgattggcga gtattgtttc
     1501 agtaagtgct gcgttttc
//
LOCUS       DATIQF010000806         1885 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_12743, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000806 DATIQF010000000
VERSION     DATIQF010000806.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12743"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(84..1157)
                     /locus_tag="VLL95_13880"
     CDS             complement(84..1157)
                     /locus_tag="VLL95_13880"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: protein motif:HMM:NF006707.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HSR39998.1"
                     /translation="MPAKKIAELLGDKAEYLLNHQSKTISKDQLHLPGPDFVDRIFAN
                     SDRNPQVMRNLQAMYGTGRLANSGYLSILPVDQGIEHSGGASFAKNPIYFDPENIVKL
                     AIEGGCNAVATTFGGLGLLSRKYAHRIPFVVKINHNEFLTYPNKFDQVMFASIKASWN
                     LGAAAVGATIYFGSDEATRQIQEVSRAFEMAHELGMATILWCYLRNPAFKTKEKDYHV
                     SADLTGQANHLGVTIEADIIKQKLPENNGGYLALNNKESAYGKNDKRIYEELTTDHPI
                     DLCRYQVANCYMGRAGLINSGGASSGASDMAEAVTTVVVNKRAGGMGLISGRKAFQRP
                     MKEGVEILNAIQDVYLDKDVTIA"
     gene            complement(1371..>1885)
                     /locus_tag="VLL95_13885"
     CDS             complement(1371..>1885)
                     /locus_tag="VLL95_13885"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: protein motif:HMM:NF013296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HSR39999.1"
                     /translation="VENSKLYTQPEDVAYAYRELSKVGKLFTVAAAFGNVHGVYKPGN
                     VELRPVILHNSQVYIQKEFNTGEKPVYFVFHGGSGSPQHQIREAIGYGAIKMNIDTDL
                     QWAFWEGVLNNYKKHEGYLQGQLGNPEGEDKPNKKYYDPRVWLRKGEEAFIQRLEIAF
                     EDLNCINRNS"
BASE COUNT          487 a          424 c          440 g          534 t
ORIGIN      
        1 ataaataata ttggaataag ttgttttgtt ttattcttgt tcatggataa taaaaaagcc
       61 gggagcaatt cccggctttt attttaagcg atcgttacat ctttatcaag gtaaacatcc
      121 tgtatggcat tcagtatttc caccccttct ttcatgggtc gctggaaagc tttgcgaccg
      181 ctgatcagtc ccatgccacc ggcccgtttg ttcactacga cagtcgtaac tgcttcagcc
      241 atatcactgg caccggaaga agcaccacct gaattgatta aaccggcacg acccatataa
      301 cagttggcta cctggtagcg gcagagatcg ataggatgat cggtagtgag ctcttcataa
      361 atccgcttat cattcttacc ataggcagat tctttgttat tcaaagcgag gtaaccacca
      421 ttgttttcag gtagcttttg tttaatgata tccgcttcga tggtaacacc gagatgattg
      481 gcctggccgg taagatcagc cgatacatgg tagtcttttt cctttgtttt aaaagccgga
      541 ttgcgcaggt agcaccagag aatggtggcc atacccagtt catgcgccat ttcaaatgcc
      601 ctgctaactt cctgtatctg gcgggtggct tcatcactgc caaaatagat agtagcgcct
      661 acagcagctg ccccaaggtt ccagctggct ttgatggatg caaacattac ctggtcaaac
      721 ttattgggat aagtaaggaa ttcgttgtga ttgatcttaa cgacgaaagg aattctgtgt
      781 gcatacttac gggaaagtaa tcccaggccg ccaaatgtag tagctacagc attgcagcct
      841 ccttcaatgg caagcttgac aatgttctcc ggatcgaagt aaattgggtt tttggcaaaa
      901 gaagcaccgc cactatgttc aataccctgg tcaacgggca ggatagacag ataaccactg
      961 ttggcaagac ggccggtgcc atacatcgcc tgcaggttac gcattacctg cgggttgcgg
     1021 tcactgttgg caaaaatgcg gtctacaaaa tcgggcccgg gcaggtgcag ttgatctttt
     1081 gaaatcgttt ttgactggtg attgagtaaa tactcggcct tgtcaccgag gagttcagca
     1141 atttttttag caggcatagc aatgttggat tgattagtga attggttact aacacatgtt
     1201 cggcaaaggt agggagggga gcggaaagtt aggagtgctg agtcaatagt cgttagcctg
     1261 gagtcgacgg cagggaggag agaaaataaa ccacagatta cgcatattca tacaccgaaa
     1321 acactttgtc atccgtgaaa gtgtagctga gtaatctgtg gtaaaaaaaa ttaactgttc
     1381 cggttgatac aattgaggtc ttcaaaagct atttccaggc gctggatgaa tgcttcttca
     1441 cccttgcgca gccataccct cggatcgtaa tattttttat taggcttgtc ttccccttcg
     1501 gggttgccaa gctggccctg caggtaacct tcatgtttct tgtaattgtt cagcacacct
     1561 tcccagaaag cccattgcag gtcggtatca atattcattt tgatcgcacc ataaccaata
     1621 gcttccctga tctggtgctg cggggagccg ctgcctccat gaaaaacaaa ataaacaggc
     1681 ttttccccgg tgttaaattc cttttggata taaacctggc tgttgtgcag gataacagga
     1741 cgcaattcca cattacccgg cttgtataca ccgtgtacgt taccgaaagc cgctgctacg
     1801 gtgaagagtt ttcctacttt gcttaattcc ctgtaggcat atgccacatc ttccggctgt
     1861 gtgtagagtt tggaattttc cacat
//
LOCUS       DATIQF010000807         3094 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_58439, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000807 DATIQF010000000
VERSION     DATIQF010000807.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3094
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58439"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..962
                     /locus_tag="VLL95_13890"
     CDS             <1..962
                     /locus_tag="VLL95_13890"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR40000.1"
                     /translation="RETWLLSVVMLINRAGTMAVPFMSMYVTQSMHRSIADAGLVITL
                     FGVGSVMGASAGGWLVDKVGFRPVQMVAAIVSGLLFILFSFINDFQWLCALTVLLAFV
                     AEAFRPANITAIASYSKPENITRSYSLNRLAINLGWAVGAGLGGLVAAIDYHWLFFLD
                     GSTNIMAGLLILLLLPSAKQRAATHPPEAPPAKIIKPWQDPFYVRFILLTALYNTCFF
                     LVFRLVPVFWKEQWILGERMIGMVLAMNGVIIVIFEMMLVNKLEGKRNPMHYIIAGCV
                     ANALGYVMLLMPGFTPLLLALACMTMMTMGEMLAMPFMNSLIM"
     gene            complement(1331..2377)
                     /locus_tag="VLL95_13895"
     CDS             complement(1331..2377)
                     /locus_tag="VLL95_13895"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HSR40001.1"
                     /translation="MSKGINLSNWFNDYSDPTQYGTRFSLASLQQIKSLGFTYVRIPI
                     GSTILYNSTAPSVLNSSQLSLVDAAVKNAIDAGLGVTLNLHPWKNDMDSLLAADPLMV
                     NKVSLYWMSMAAYFKKYPSDKLFFEVYNEPHASAAGLTTKPPSWWAHAQELLIAAIRS
                     QTSGHYIIAGGESWNSIEGLLNLNPSSQPKVIYNFHFYDPFLFTHQGAGWAGWEPAQM
                     GKNIPYPSTPEGVTPLISSTYNTALQNALRWYGSQRYNSDSLNKWIKRVAQWAQDKNV
                     MLICNEFGSYNPNAPRQSRLTYLRDVRSILEQYKIGWAMWEYDEGFGLTDYVGGNRNN
                     PVTDNEILTALGLR"
     gene            complement(2561..>3094)
                     /locus_tag="VLL95_13900"
     CDS             complement(2561..>3094)
                     /locus_tag="VLL95_13900"
                     /inference="COORDINATES: protein motif:HMM:NF018452.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1214 domain-containing protein"
                     /protein_id="HSR40002.1"
                     /translation="WAEYAALKKKVDKKDITSGDMFGTRAFLKNNYLYRMGGAILGIY
                     GNSKEEAMYPIYSLDAENKPLNGANNYSIRFGPGQLPPANSFWSLTMYELPASLLVEN
                     PINRYLINSSMLDQLKKDADGSITLHIQNASPVKDKESNWLPAPKGPFMMAIRIYWPK
                     EEALNGTWKQPPLNKVK"
BASE COUNT          694 a          733 c          812 g          855 t
ORIGIN      
        1 ccagggaaac ctggctgctc agcgtggtca tgctcatcaa ccgggcaggc accatggcgg
       61 tcccgttcat gagcatgtac gttacacaaa gcatgcaccg gagcattgct gatgccggcc
      121 ttgtgatcac gttgtttggg gtaggctctg tcatgggggc ttcagcagga gggtggctgg
      181 ttgataaagt cggattcaga ccagtgcaaa tggtggccgc tattgtgagt ggcttgttgt
      241 ttatcctgtt ctctttcatc aacgattttc aatggttgtg cgccctcacc gtgttgctgg
      301 cctttgtggc cgaagcattc cggccggcca acatcacagc catcgcctct tacagcaagc
      361 cggaaaatat cacccgcagc tattcgctca atcgactcgc catcaacctg ggttgggcgg
      421 ttggcgccgg cctcggcgga ctggtggccg ccatcgatta tcattggttg ttcttcctgg
      481 atgggagcac caacatcatg gcaggtttgc tcatcctgtt gctgttgccc tcggccaaac
      541 aaagggctgc cacgcatcca cccgaagcgc ctcctgcaaa aatcatcaag ccctggcagg
      601 atccttttta tgtccggttc atcctgctga cagctttgta caacacctgc tttttcctgg
      661 tattcaggct ggtaccggtg ttctggaaag aacaatggat actgggagaa agaatgatcg
      721 gcatggtact ggccatgaat ggggtcatca tcgtcatttt tgaaatgatg ctggtgaaca
      781 agttggaagg caagcgcaat cccatgcatt acatcatcgc cggctgcgtg gccaatgccc
      841 tgggttatgt catgttgctg atgccgggct ttacgccgct cctgctggca ttggcctgca
      901 tgaccatgat gaccatggga gagatgctgg ccatgccctt tatgaattcg ctgatcatgt
      961 gacgcaccaa tgcctggaac cgcggccagt atgcggcagg gtatacgctc agctggagtg
     1021 tcgcccagat cataggacct gccggtgggg cctgggtcat tcagcacagc agctacacca
     1081 ccttatgggt actgctcatc attgtttgcg tggcttgtgg atatgcctat cactggctga
     1141 gccgccacca gcacaaatac gaactgagtg ccgacgcctg ataaccatca agatttgcag
     1201 cgcttccaat ggcggaaaaa gttgtggctt ttcggcagca tggctgtcgt gggattggcg
     1261 gcaatactct ttttcgcggg ttgttaattc ttgtggagaa ctgccatacg gcaggtgcac
     1321 cttaaagttg tcagcgcagc cccagcgctg tgaggatctc attatccgtg actggattgt
     1381 tcctgttgcc accgacgtaa tcggtcaggc caaagccttc atcgtattcc cacatggccc
     1441 agccaatttt gtattgttcc aaaatgcttc gcacatctcg caggtaagtc agtcggcttt
     1501 gcctcggagc attgggattg tatgatccaa attcattaca gatcagcata acgtttttgt
     1561 cttgcgccca ttgtgccacc cgtttgatcc atttattcaa cgagtcgctg ttgtatcgtt
     1621 ggctgccata ccagcgcaat gcattttgta aggctgtgtt gtaagtgctg ctgatgagtg
     1681 gggtcacccc ttcaggcgta gaaggatagg ggatattctt tcccatttgt gcaggctccc
     1741 atccggccca accggctccc tggtgggtaa acaggaaggg atcataaaaa tggaaattgt
     1801 aaatgacctt gggttgtgaa gaaggattaa gattcaaaag gccctcgatg ctgttccagc
     1861 tttcgccacc ggcaatgatg tagtgtccgc tggtttggct ccggatggcg gctatcagta
     1921 gctcctgtgc atgtgcccac cacgatggtg gtttggtggt gagaccagca gcgctggcat
     1981 gcggctcgtt gtatacttca aagaatagtt tgtctgaagg gtattttttg aaatacgctg
     2041 ccatcgacat ccagtagagt gacactttgt tcaccatgag tggatctgcc gccagcaagc
     2101 tgtccatgtc atttttccag gggtgcaggt ttaatgtgac gcccaggcct gcatcaatgg
     2161 cattcttcac tgcggcatcc accaggctta attgcgatga attcagtaca gatggcgccg
     2221 ttgaattgta aaggatggtg ctgccaatgg gaatacggac ataggtgaaa cccagcgatt
     2281 ttatttgctg caatgatgcc aaagaaaagc gggtgccata ctgagtcgga tcgctgtagt
     2341 cattaaacca attactcagg ttgattcctt ttgacaaagc agggatagca aattgaaaac
     2401 tggattttgt ttctacagtt ggcaaagaag gtttcttaca ccccaattgg aaaatcagaa
     2461 agaatggcaa gcaaagtctg gtaaacatat tatgcccatg gggatttggt agtgacaata
     2521 aaaagacgct acgcttttca ggaattgatt gtcgctgtaa ttatttcact ttgttcaatg
     2581 gtggttgttt ccaagtgcca ttcagtgctt cttcttttgg ccagtatatt cgaatggcca
     2641 tcatgaaagg gcctttgggt gccggcagcc aatttgattc tttgtctttt acagggctcg
     2701 cattttgtat gtgcagggta atgcttccat cagcgtcttt tttcaattga tccagcatcg
     2761 aggagtttat gaggtatcgg ttgattggat tttcaaccaa caggctggcc ggtagttcat
     2821 acatggtaag cgaccagaaa ctgttggctg gtggcagttg accagggcca aaacggatgc
     2881 tgtaattgtt ggcgccgttt aatggtttat tctctgcatc caaactgtaa ataggataca
     2941 tggcttcctc tttagaattg ccataaatac ctagaatagc gcctcccatt cggtacaggt
     3001 aattgttttt gagaaaagcc cgggtaccaa acatatcacc tgaggtaatg tcctttttgt
     3061 ccactttctt tttgagggct gcatactcgg ccca
//
LOCUS       DATIQF010000808         1534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_256009,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000808 DATIQF010000000
VERSION     DATIQF010000808.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256009"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1534)
                     /locus_tag="VLL95_13905"
     CDS             complement(<1..>1534)
                     /locus_tag="VLL95_13905"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HSR40003.1"
                     /translation="LPFADGNFCDATAFMFSRGGDSLFIGTSDNRLLVLGNDGRLLQE
                     ISDHNDMVKWIGTLKGKHSFIITSSNDGTIKLRDPQTLEAIVTLFALNNHGYIIVDSS
                     NHYKRSKSGAQAVLFYKEGHVYQPEQYDLYFNQPHKVLQTIGLASDELIALHKELYER
                     SLKTAGIQNKASMLSPTLSVKIVNETALAPFTNNKQYPLQVSINAASVPAKKLLVFVN
                     GTPAINGSAGLDISVEPGSASIQDLSVPLARGRNNITIKAIDANGVSSFEKRLIVQYQ
                     PEEINRANLYVITVSVSNYKDSSLNLRYAVKDGKDFMNVWKKDGKKRLGFPSQFGKIY
                     DYTFFDDQATASNILALKDTLKRAKEEDMVILYFSGHGMLDDRKDFWYATWDVDARNP
                     GANGLSYRQMEGLLDSIAPVRKLLLLDACHSGEVDKSQLVEDANATAQSGARSSIKKF
                     RYKQDASLPDIGNLFELMQEMFNSFNKGTGTVVISAAAGDSYALESDQWNNGVFTYAL
                     INV"
BASE COUNT          361 a          362 c          380 g          431 t
ORIGIN      
        1 ggacattgat cagcgcatag gtaaatacgc cattgttcca ctggtccgat tcaagtgcgt
       61 aactgtcacc ggctgccgct gaaatcacaa ccgtacctgt gcccttgttg aatgaattga
      121 acatctcctg catcagctca aacaaattgc ctatgtcagg caggctggca tcttgtttgt
      181 acctgaattt tttgatgctg ctgcgggccc cggattgtgc tgtagcattg gcgtcttcca
      241 ccagttggct tttgtccact tcgccactgt ggcaggcatc cagcagcaac agcttgcgaa
      301 ctggtgctat gctgtcaagc aggccttcca tttgccggta gctcagtccg ttagcccccg
      361 gattcctggc atccacatcc catgtggcat accaaaaatc tttgcggtca tccagcatgc
      421 catgtcctga aaaatatagt attaccatgt cctcctcttt agcccgcttc aacgtgtctt
      481 tcagcgccag tatgttggaa gcagtagcct ggtcatcgaa gaaagtgtag tcgtaaatct
      541 tgccaaattg tgagggaaag ccgaggcgtt ttttcccgtc ttttttccaa acattcatga
      601 agtccttgcc atcttttaca gcatagcgca aattcaatga gctgtccttg tagttggaaa
      661 cagaaacggt gatgacgtac aggttggcac ggtttatttc ctctggctgg tattgaacaa
      721 tcagtctttt ttcaaaggag gaaacgccat tggcatcaat ggctttgatg gtaatgttgt
      781 tcctgcccct tgccaaaggc acacttaggt cttgaatgga agcactacct ggttcgactg
      841 aaatatcgag gccggcactg ccatttatgg cgggtgttcc gttcacaaac accaacagtt
      901 ttttggccgg tacactggca gcattgatgc tcacctggag tggatattgc ttgttgttgg
      961 tgaaaggagc aagggcggtt tcatttacaa ttttcacgga gagggtaggg ctcagcatcg
     1021 atgccttgtt ttgaatgcct gcggttttca ggctgcgttc gtacaattct ttgtgaaggg
     1081 ctatcagttc atcgctggcc aggccaatgg tctgcaacac tttgtgtggc tggttgaaat
     1141 acagatcgta ttgctctggt tgatacacat gtccctcctt gtaaaaaagc accgcctggg
     1201 cgccactttt tgagcgtttg taatggttgg acgagtcgac aatgatgtaa ccgtgattgt
     1261 tgagtgcaaa cagggtgaca attgcttcca atgtttgcgg atcacggagt ttaatggtgc
     1321 catcattgga ggaggtgatg atgaacgaat gttttccctt cagagtgcca atccatttta
     1381 ccatgtcgtt gtgatcggaa atctcctgca gcaagcggcc atcattaccc agtaccaaca
     1441 accggttatc agatgtgcct ataaaaagag aatcgccgcc gcgggaaaac atgaaagccg
     1501 tggcatcgca aaaattgcca tcggcaaaag gcag
//
LOCUS       DATIQF010000809         2270 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_180035,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000809 DATIQF010000000
VERSION     DATIQF010000809.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2270
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180035"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            585..1163
                     /locus_tag="VLL95_13910"
     CDS             585..1163
                     /locus_tag="VLL95_13910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HSR40004.1"
                     /translation="MKKVHQGISLIFFLLVVSALNAQVNYRSVSNNVVIAGTSTLHDW
                     EMKSAVASVAAAFELDPDGKPVDIVGVNFVMDPTSLKSGKGAMDDNAYKALQTKTYKT
                     IKFASVGGTITPAGPNKYTIKCSGMMQIASKSINTEMTVSCTVNADGTMTCTGSKNIK
                     MTTFDVQPPSFMMGTIKTGDDLKITFTTVLKK"
     gene            1226..>2270
                     /locus_tag="VLL95_13915"
     CDS             1226..>2270
                     /locus_tag="VLL95_13915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40005.1"
                     /translation="MKTSYLKSGIAVFILAMAVGTVSAQDTTAQKNEKNKVITVKAED
                     IQYFRPWDQRGINMFEPSKIDNTPFNGVKVRIGGSFTQTYQMLSHQNSANYVRVQTGS
                     TTFANGNLLYNVIRAEDTTSAKLNGFNTASANLNFDIQLADGIRITLENYMSSRHHNE
                     FWVKGGYIQIDKLPMFGNPDWFSKNVRVKIGHFQPNFGDFQMRRSDGGNTIWNPFTEN
                     LILDAFTTEIGGEVYLWPTKGKELMLMAGMTAGFINGNIQVQPEAINSAGVVPTKRTP
                     SIFAKAAYDKQISEKLRIRLSGSVYHNPNIQRNTLFAGDRTGSNYVGVMDPALSRSSV
                     APNYWVPISLGTSP"
BASE COUNT          646 a          527 c          475 g          622 t
ORIGIN      
        1 taggcatcga ggatgcagag gatttgattg aagatcttgc caaagcaatc ggttaaaaca
       61 atggcactat tgattgatgt tttaggctgg attgcctcag tactcattgt cggagcttac
      121 ttcctgaaca tcaggggacg ctggtctgcc cagtccaaat ggtatatcat ttgtaatctg
      181 gtgggtgggg cattctttat tgtaaatact gcctatcatg gcgcttatcc ataatccctg
      241 gtaaatgtgg tttgggtgat cattgcagtg ttctccttac tgaaattgtt gcgtaacacg
      301 cctcaggtaa ataaagagga gtagacagtc tcgactatat aggagcattt attcaagaat
      361 ctgcaataat gatgacattc cattgcctca tagttcgcta tgaggcattt tacttgtata
      421 accattcaga atatttaagg ttgccgactg tgtccgctca ttagtcactt atgatttggg
      481 tcatgttttt tcgtgataac aatcactgat ttgactgaca gcgagcatga gtgagggtat
      541 atggcgtggg tagttttaca tcgtaaacaa aagcccacaa agacatgaaa aaggtacatc
      601 aaggaatcag tctgatcttc ttcctcctgg ttgtttccgc tctgaatgca caggttaatt
      661 accgatctgt ctccaacaat gtagttattg ccggtacttc tactcttcac gattgggaaa
      721 tgaagagcgc tgtagccagt gtggctgctg cctttgaact ggaccccgat ggcaagccgg
      781 ttgatattgt tggtgtcaat tttgtaatgg accccacttc gctcaagagc ggcaaaggtg
      841 ccatggatga caatgcttat aaggcattgc aaacaaaaac ctacaagacc ataaagttcg
      901 cttccgttgg cggtaccatt actccggccg gacccaacaa atacaccatt aagtgcagcg
      961 gcatgatgca gatagcctct aaatccatca ataccgaaat gaccgtttcc tgcacagtaa
     1021 atgccgatgg aaccatgacc tgcaccggca gcaaaaacat caaaatgacc actttcgacg
     1081 tgcagccacc ctcttttatg atgggtacta ttaaaacagg agacgatctc aaaatcacct
     1141 tcactaccgt actcaaaaag taagcaacaa tcctttctct aataattaaa tcagaaacca
     1201 aatcttttca tcacaaactg tttttatgaa aacttcatac ttgaaatcag gaattgcagt
     1261 ctttatccta gccatggcag ttggtactgt atcagcacag gataccactg cacagaaaaa
     1321 tgaaaaaaac aaagtaataa ccgttaaagc ggaagacatt cagtatttcc gcccatggga
     1381 tcagcgtggt atcaacatgt ttgagccttc caagatcgat aacactccat ttaatggtgt
     1441 gaaggttcgc atcggcggct catttacaca gacttaccaa atgctgagtc accaaaactc
     1501 agcaaactat gtaagagtac aaaccggtag tacaaccttt gctaatggta atcttcttta
     1561 taacgtgatc cgtgcagaag acactacctc tgccaagttg aacgggttca atacagcttc
     1621 tgccaacctg aattttgaca tccagttggc tgatggtatc cgcattaccc tggaaaacta
     1681 catgagctca aggcaccaca acgaattctg ggtaaaaggt ggttacatcc aaatcgacaa
     1741 gctgccaatg tttggcaacc ccgattggtt cagcaagaac gtacgtgtta agatcggtca
     1801 cttccagccc aacttcggcg atttccaaat gcgccgttct gatggtggta ataccatctg
     1861 gaaccccttc accgaaaacc tgatcctcga tgcctttact actgaaattg gcggtgaagt
     1921 ttacctgtgg cccaccaaag gaaaagaact gatgctgatg gccggtatga ctgctggttt
     1981 catcaatggc aatatccagg tgcaacctga agccattaac tcagcaggtg ttgttcccac
     2041 caagcgtact ccttccattt tcgcgaaagc tgcttacgac aaacaaatca gcgaaaaact
     2101 ccgcatccgt ttgtctggtt cagtttacca caaccccaat attcagcgga acaccctgtt
     2161 tgctggcgac cgtaccggtt caaactatgt aggtgtgatg gatcctgctc tttccagaag
     2221 ttcagtagct cctaactatt gggttcctat ttctctgggt acttctcctt
//
LOCUS       DATIQF010000810         5575 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_58467, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000810 DATIQF010000000
VERSION     DATIQF010000810.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5575
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58467"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1659)
                     /locus_tag="VLL95_13920"
     CDS             complement(<1..1659)
                     /locus_tag="VLL95_13920"
                     /inference="COORDINATES: protein motif:HMM:NF013507.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kelch repeat-containing protein"
                     /protein_id="HSR40006.1"
                     /translation="MKKNFVGPIGHVLLLASYFFSTAIIAQKNTWTWIGGDAYHANSP
                     VYEKVNGGPEVNPGAREGATTVVSNGKVYLFGGATAKVGMDPKFLEWNPPTCYRNDLW
                     EYDPAVKALRFISGTIATVSWQDPQPRVGAALWVLGTKAYIFSDQVWDGQEYYFEKND
                     MWEYDLVTGAQKMLFKYYSGGYPGIIVPSSRSYANTWVSNDKLYLFGGSGNNDIWEYT
                     PSTNTWLQVRSNSPAIYGTMGIAAAENTPGGRTQAGSVQAGTKVFLFGGQGKSDASDA
                     TGELNDAWELNLATNQWRWIGGSKTLNNAAVYGTLNQPSVNNRPGGRHSAGCWWIDNK
                     LWIGLGNGYDAQFQKGNLNDLWSYDTSTLQWCWRKGSNTKYSAGYFGNINTGTAQTNP
                     GSKTFFSYWTFNNRLMLWGGSELDDERYFVRLNDCWSFDAASNIWTWVGGNSQPQNDY
                     YLAGIYGNKGVPSSVNFPGGREQAATWSVYGKFYLFGGWGTDTKGKTGWLNDLWEFDP
                     PSKKWTWISGFDTCNGTANYGTKGVAKEENLPGPRGRAASWSNKG"
     gene            complement(1830..2705)
                     /locus_tag="VLL95_13925"
     CDS             complement(1830..2705)
                     /locus_tag="VLL95_13925"
                     /inference="COORDINATES: protein motif:HMM:TIGR01200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GLPGLI family protein"
                     /protein_id="HSR40007.1"
                     /translation="MKKVLIPFLFLIGTLPALAQVKEGKVVYERKINLHKRLPPEAEQ
                     MKAMIPEFQTSKMELQFNQTQSLYKNIPEEENQMPAAGDGGGPRFNMRFGGGSPNDAT
                     FRDYDKEQIVESRELGPKTYLIEDTLRPLKWKIEGDTMTINGYLCYKATTTLNLNQVM
                     GGGMRFGGGPGGGQGGQQRAEGDTARRQQRTMNIPAEQKVEAWFTQDIETSAGPDFFF
                     GLPGLIMKVIVDEGTTVYKVLALDTQAKTTVKAPTSGKKITREEYRKLMQQQMQGMRP
                     PGGGGGGQRMMIINQ"
     gene            2837..4294
                     /locus_tag="VLL95_13930"
     CDS             2837..4294
                     /locus_tag="VLL95_13930"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSR40008.1"
                     /translation="MVQSRKIVVAGWLMASSILLLILFQAYWLRKTYRDEFFSLRREL
                     SVILRETTVRRQFQQMVWNSNGNRVVYRMDSLRGGAVVVTNNRSSGDRAKNDSMRFEV
                     RIGVPLDSANGQRPTRIIAMEGDRRNESPESTKELTVMVPYFDDSVNLELLDSLYKKA
                     LGENNISLDYTLSKLNKRQVDSLMEHEPMRMNMMRRRGGPSLPMAMLQANFGNPFFPL
                     LSKMGGPLFFSVLMLGITIAAFLFLYRSLKAQHRLALLKSDFISNITHELKTPIATVG
                     VAIEALKNFNAINDPQRTREYLDISGNELHRLGLLVDKVLRLSMFEQDKMELRKESVD
                     IEQLVQEVLQSMKLQFEKAGAVVDLKTEAASTTVQGDRLHLLSVLYNLIDNALKYCKE
                     KPVMQIHLQQQGNTLRLAVQDNGIGIPAEYRSKVFDKFFRVPHGDTHNIKGYGLGLSY
                     VAEVVHKHGGEIEVQAGPAAGSIFVVTLPLAQSTA"
     gene            4304..4987
                     /locus_tag="VLL95_13935"
     CDS             4304..4987
                     /locus_tag="VLL95_13935"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR40009.1"
                     /translation="MATVLYVEDELFLGKIVKESLESRGFIVAMEDDGDRVLDLFKRT
                     NPDICVLDVMLPNKDGFTIAKEIRKINASVPILFLTAKTQTEDVLKGFAEGGNDYLRK
                     PFSMEELIVRINNLLQLTGSHSIQKEDGDNIAIGQFSFNKPRQVLSGGAEERKLSYRE
                     SELLLYLFEHRNSIIDRRELLNAIWGNDSFFNSRNLDVYITKLRGYLREDPSLEILTI
                     KGVGYRFVS"
     gene            5042..5440
                     /locus_tag="VLL95_13940"
     CDS             5042..5440
                     /locus_tag="VLL95_13940"
                     /inference="COORDINATES: protein motif:HMM:NF025473.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABA4-like family protein"
                     /protein_id="HSR40010.1"
                     /translation="MTLNDAFQMANGLALLAWVYLAIFPFRPATSKIIIGTVVTLLAA
                     VYATHVFGAIHADDFSKFSTLEGVQSLLNSPGATFVGWVHYLAFDLMVGLFIASNAAR
                     HGISYWYILPCFFFTFMLGPAGLLLYLLIR"
BASE COUNT         1338 a         1397 c         1346 g         1494 t
ORIGIN      
        1 acccttgtta ctccatgaag ctgcccgtcc tctcggccca ggcaaatttt cctctttggc
       61 tacacctttt gtgccataat tcgccgtccc attgcaggta tcgaaaccgc tgatccaggt
      121 ccattttttg gatggcggat caaattccca aagatcattc agccagccgg ttttgccctt
      181 ggtgtcagtg ccccatccgc cgaacaaata gaatttacca tataccgacc acgttgcggc
      241 ttgctctctt cctccgggaa agttaacaga cgagggaaca cccttatttc catagatccc
      301 agccaaatag taatcatttt gtggttggga atttccgcct acccacgtcc agatattgga
      361 agcggcatca aaactccagc aatcattcag ccgtacgaaa tatctctcat catccagctc
      421 cgaaccaccc cagagcatta gtcgattgtt gaaagtccaa tagctgaaaa atgtttttga
      481 gccaggattg gtttgagcag ttcctgtatt gatgtttcca aaatacccgg cggagtattt
      541 ggtatttgac ccctttctcc aacaccattg caaggtggag gtgtcgtacg accacaagtc
      601 attcaggttc cctttttgaa actgggcatc gtaaccattg ccaagcccaa tccaaagttt
      661 gttatcaatc caccaacacc cggcgctgtg tcgtcctcct ggccggttgt taacggaagg
      721 ctggtttagg gtgccataca ccgctgcatt gttgagtgtt tttgacccgc caatccaacg
      781 ccattgatta gtggcaaggt tgagctccca tgcatcgttc aattcccctg ttgcatcact
      841 ggcatccgat ttgccttgtc caccaaaaag aaaaaccttg gttcctgcct gtacgctgcc
      901 cgcctgcgtt ctgcctcccg gtgtattttc agcagctgct atgcccatcg ttccataaat
      961 ggccggacta tttgaacgca cctgcaacca ggtattggtg gatggggtgt attcccagat
     1021 gtcgttgttg ccactgcctc caaaaaggta aagtttatcg ttggataccc atgtattggc
     1081 atacgaacgt gaagagggca caattattcc ggggtatccg cctgaatagt atttgaaaag
     1141 catcttctga gccccggtaa ccaggtcata ttcccacata tcattttttt cgaaatagta
     1201 ttcttgccca tcccaaacct gatcgctgaa aatgtaagcc tttgttccta atacccacaa
     1261 tgctgcaccc acccttggct gaggatcttg ccatgagaca gtagcgatgg ttccactgat
     1321 aaagcgcaag gctttcacgg ccggatcgta ttcccagaga tcgtttctgt aacaagtggg
     1381 agggttccat tccaggaatt ttggatccat ccccactttt gctgttgccc ctccaaaaag
     1441 gtagaccttg ccgttgctta caacggttgt cgccccttcc cttgcgccag ggttcacctc
     1501 cggtccccca ttcacctttt cgtacacagg tgagttggca tggtaggcat caccgcctat
     1561 ccaggtccag gtattttttt gcgcaatgat ggcagttgaa aaaaagtaag atgccagcaa
     1621 taagacatgg ccaatcgggc ccacaaaatt ctttttcatg gcaagcgtat aaggtgtgaa
     1681 agaaattgct gccgccatgg tagctaatca ggtgcaaagg tctggcaaac cattcaagga
     1741 accattgatt tcactcatta ttctatgcta tgggtgtaaa aaaacacccc ggcagtgtaa
     1801 ccggggtgtt gaataaagaa atttctaact tactgattga taatcatcat gcgttgtcca
     1861 ccaccgccgc caccaggagg acgcatgccc tgcatttgtt gctgcatcag tttgcggtat
     1921 tcttcgcggg ttattttttt accggatgtg ggagctttta ccgtggtttt ggcctgcgta
     1981 tccaaagcca gaactttgta aacggtagtg ccttcatcta caatcacctt catgatgagt
     2041 ccgggaagtc cgaagaagaa atcggggccg gcactggttt caatgtcctg ggtgaaccag
     2101 gcttctactt tctgttcagc gggaatattc atggtgcgtt gctgacgacg ggcagtatcc
     2161 ccttcagcac gctgctgtcc tccctgtcca ccgccgggcc cgccaccaaa gcgcatgccg
     2221 ccgcccatca cctggttcag gttgagggtg gtagtagcct tgtagcacag gtagccatta
     2281 atggtcatgg tgtctccttc gattttccat ttcagtggac gaagggtgtc ttcaatcagg
     2341 taagttttgg ggcctagttc gcggctttcc acgatctgct ctttgtcgta atccctgaaa
     2401 gtggcatcat tggggctgcc gccgccaaag cgcatattga atcgtggtcc gccaccatcg
     2461 ccggcagccg gcatctggtt ttcttcttcc ggaatgttct tgtaaagcga ttgtgtttgg
     2521 ttgaactgca gttccatttt cgaagtctgg aactccggta tcatggcttt catttgttcg
     2581 gcctcgggtg gaaggcgttt gtgcaggttg atctttcttt catacaccac ttttccttct
     2641 ttcacctgtg ccagtgcggg aagtgtgcca atgagaaaca ggaatggtat caataccttt
     2701 ttcatcgaga aataattttc accaaagcta ctgggtcagg gttatgccac ctgttaagag
     2761 tgatgagtgt gtggttaatt aaggttaacg gttgataagc ggcagaataa gtcgccggta
     2821 tttttgagca tcgattatgg tacaaagcag aaaaatagta gtggccggct ggctgatggc
     2881 aagcagcatt ttgttgctca ttctttttca ggcctactgg ctgcgcaaaa cctatcgcga
     2941 tgaattcttc agccttcgcc gtgaactgag tgtcattttg cgggaaacaa cggttcgccg
     3001 gcagtttcag caaatggtct ggaattccaa cggcaacagg gtggtttatc gcatggattc
     3061 attgcgggga ggagccgtgg tggtcaccaa taaccggtct tccggggacc gtgccaaaaa
     3121 cgacagtatg cgctttgaag tgcgtattgg cgtgccgctt gattcggcca atgggcagcg
     3181 cccgacccgc attattgcaa tggaaggcga caggagaaat gaatcgcccg agtccacgaa
     3241 agagttaacg gtgatggttc cctatttcga cgattctgtc aacctggaac tgctggactc
     3301 cctttacaaa aaagcgctgg gcgaaaacaa catttccctt gactacacgc tgtcaaaatt
     3361 gaataagcgg caagtggatt cgctgatgga gcacgagccc atgcgcatga acatgatgcg
     3421 tcgacgcgga ggcccttcgc tgccaatggc catgctgcag gcaaattttg gcaacccgtt
     3481 cttcccgctt ctttcgaaaa tgggaggccc gcttttcttt tcggtgctca tgctgggcat
     3541 caccattgcc gcattcctgt tcctgtaccg cagcctgaaa gcacaacacc ggctggccct
     3601 gctgaaaagt gattttatca gcaacattac ccacgaactg aaaacgccta ttgccactgt
     3661 aggagtagcc atagaagcct tgaagaattt caatgctata aatgatcctc agcgtacccg
     3721 tgagtacctc gatatatcgg gtaacgaact gcaccgactg ggtttactgg ttgataaggt
     3781 acttaggctg tctatgtttg agcaggacaa aatggaattg cgcaaagagt cagtggatat
     3841 tgaacaactg gtacaggaag tactgcagtc aatgaagttg cagttcgaaa aggccggcgc
     3901 tgtagtggac ttgaaaacag aggctgccag taccaccgtt cagggcgaca ggcttcactt
     3961 gctcagtgtg ctttacaacc tcatcgataa tgcattgaag tattgcaagg aaaaaccggt
     4021 catgcaaatt cacctgcaac aacagggcaa cactttgcgc ctggctgtgc aggacaatgg
     4081 cattggtatt cctgctgaat accgcagcaa agtgttcgac aagtttttca gggttccgca
     4141 tggcgatacg cacaatataa agggctacgg actgggcctc agctacgtgg ccgaggtagt
     4201 gcacaaacat ggcggtgaaa tagaggtaca ggcaggccct gcagccggaa gcatttttgt
     4261 tgttacctta cccttggcac aaagcacggc ttaattgttt tttatggcta ccgttctgta
     4321 tgtagaagat gaattgttcc tcggaaaaat cgttaaggaa agtcttgaat cgcggggctt
     4381 cattgttgcc atggaagatg acggcgacag ggtgcttgat ctattcaaac gcaccaaccc
     4441 tgatatctgc gtgctggatg tgatgctgcc caacaaagac gggttcacca ttgccaaaga
     4501 gatcaggaag atcaatgctt cggtacccat cctttttctg actgccaaaa cgcaaaccga
     4561 agatgtattg aaaggattcg ccgagggagg aaacgattac ctgcggaagc ctttcagtat
     4621 ggaggagttg atcgtacgca tcaacaactt gctccaactt accggcagcc attcgattca
     4681 aaaagaagat ggcgacaata ttgccattgg ccaattcagc ttcaacaaac cccgccaggt
     4741 attaagtggc ggtgccgaag aacgaaaact gtcttaccgc gaaagcgaat tgcttttgta
     4801 cttgtttgag caccgcaaca gcatcattga ccgtcgggaa ctgctgaacg ccatttgggg
     4861 aaatgacagc ttttttaaca gccgcaacct cgatgtgtac atcaccaaat tgcggggcta
     4921 tctccgcgaa gatccctccc tcgagatcct taccatcaaa ggcgtggggt atcgttttgt
     4981 aagctgatct ttaatccatt ggtttaatct gtaagttcat ggctgcaaaa ccaatgcaga
     5041 catgacactg aatgatgctt tccaaatggc caacggcctt gccttgctgg catgggttta
     5101 cctcgccatt tttcctttcc gccctgctac cagcaaaatc ataatcggaa ccgttgttac
     5161 cctgctggca gcggtatacg ccacgcatgt atttggcgct atccatgctg atgatttcag
     5221 taagttcagc accctggaag gtgtgcaatc tttactcaac agcccgggcg ccacttttgt
     5281 aggctgggtg cattacctgg ctttcgacct gatggtgggt ttgttcatcg cttccaatgc
     5341 cgcccggcat ggcattagct actggtacat tttaccctgt ttctttttca ccttcatgct
     5401 ggggcctgcg ggtttgctct tgtacctgct tatcaggtga gcggtgacga agcagtattt
     5461 cgcagaaaat ttttagccca ttttgtaaag catcgccaca atagctttgc accgatcatt
     5521 ggcaagcatg caaacaactc ccattggcat tttcgattca ggatacggag gcctt
//
LOCUS       DATIQF010000811         3083 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_210688,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000811 DATIQF010000000
VERSION     DATIQF010000811.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3083
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210688"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(280..1638)
                     /locus_tag="VLL95_13945"
     CDS             complement(280..1638)
                     /locus_tag="VLL95_13945"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HSR40011.1"
                     /translation="MPWKKNILETIGDTPMIQLNKVAKDFPCTVLAKVDYFNPGNSIK
                     DRMALKMVEVAEQDGRLKPGGTIVEGTSGNTGMGLALAACVKGYKCIFVTTDKQSKEK
                     ADILKAVGAEVIVCPTNVMPDDPRSYYSVAKRLATEIPNSVYMNQYDNLANRQAHYES
                     TGPEIWEQTEGKITHLVCTAGTGGTITGTAMYLKEKNPNIQVWAIDVYGSLLTKYFRT
                     GEVDMNEVHPYISEGFGEDFVPENYDMRYIDHFEQVTDKDGAIQARRLAREEGLFCGY
                     SAGSCFQGLLQLKDRLKKDDLVVCIFHDHGSRYVGKVYNDQWMMERGFLDVKTFRDIV
                     SGRGRQRLITALPQDTVAAVVEMMQKYDIENVPVMDGDKNIGSLSEQGLFNKVFSNPD
                     LKTQPVSAVMEHPYPEVAFDTPVERLSSLMTRENGAVLSKDESGAWHIVTKYDVIKSL
                     AK"
     gene            1756..>3083
                     /locus_tag="VLL95_13950"
     CDS             1756..>3083
                     /locus_tag="VLL95_13950"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HSR40012.1"
                     /translation="MKHLKALNKYFWKYRYRLVAGLCFIIVSNYLAILAPQITAYVVD
                     KVQHLLPGAVQRPLARQTDPLVNLFIDYVEQLDWSFSGIVTLCGITILMLAIVRGIFM
                     FFMRQTIIVMSRYIEYDQKNEVFAHYQRLDTHFFKTHTVGDLMNRIAEDVSRVRMYTG
                     PAIMYLANVATLVVFAVYNMLGKNVELTLYSLAPLPILAVVIYRVNTIVHRRSEKIQA
                     LLGDLTTNAQQSYSGIRVIKSYVQEKNMLHFFDQNSLRYRDNALKLAKVDALYYPSIL
                     LLIGASTVITIMIGGLYYLNGKISEVGVIVEFVLYINMLTFPVSAIGWVASMIQRAAA
                     SQKRLNEFLQLEPTIENPETVAAAPSPQCEIVFENVSFTYPHTGITAIRHFNLRIAPG
                     QKVAVIGKTGSGKSTIANLLLRFYDVNEGRVLLDGEEVKNYDLAELRKRI"
BASE COUNT          677 a          776 c          793 g          837 t
ORIGIN      
        1 gccatgcgct gataatggcg tggcgtggga atgctggcga tgttggattt gcttttggta
       61 cgaatagtat ccgcaggccg tgaccggttt tgccagaacg ataattgttg ttcgttggca
      121 gcatgggttt gctgcgccat caaaagaatg gcgatggggt aaaacagcct tgcttgcatc
      181 ggcagttatt tgctgcaaga tgcatggctg cggtataatg cataaaaaag caccctattt
      241 ttttccggat gctcaatgaa tcttttacga taaacatctt tacttggcca ggcttttgat
      301 cacatcgtat ttggtaacga tgtgccaggc gcccgattcg tctttggaca acacagcccc
      361 attttcccgg gtcatcaggc tgctcaggcg ttccaccggc gtatcgaagg ccacttcggg
      421 ataaggatgt tccatcaccg ccgaaaccgg ctgggtcttg aggtcaggat tgctgaacac
      481 tttgttgaac aagccttgct ccgacagtga gcctatgttt ttgtcgccat ccatcacggg
      541 tacattttcg atgtcgtatt tctgcatcat ctccaccaca gcggccacgg tatcctgcgg
      601 caacgcggta atgagccttt gccggccacg tccgcttaca atgtctcgga atgtctttac
      661 atccaggaag ccccgctcca tcatccattg gtcgttgtat actttgccca cgtagcggct
      721 gccatgatca tggaaaatgc acaccacgag gtcatctttt ttgaggcggt cttttagctg
      781 cagcaatccc tggaaacagc tgccggcact gtagccgcaa aagagtcctt cttcgcgggc
      841 caggcggcgg gcctgtatgg cgccgtcttt atccgttacc tgttcaaaat gatcaatgta
      901 acgcatgtcg taattctccg gtacgaagtc ttcaccaaaa ccttcgctga tgtagggatg
      961 cacttcattc atatccactt caccggtacg gaaatacttg gtgagcaagg aaccatacac
     1021 atcaatggcc catacctgga tgttggggtt cttttctttc aggtacatgg cggtgccggt
     1081 gatggtgcca ccggtacccg ccgtacaaac gaggtgggtg atctttcctt cggtttgctc
     1141 ccaaatttcc gggccagtgc tttcgtagtg tgcctgccgg ttggccaggt tgtcgtactg
     1201 gttcatgtac acactgttcg gtatttccgt ggccaggcgt ttggcaacgc tgtaatagct
     1261 gcgagggtca tcgggcatca cgttggtggg gcacacgatc acttcggccc ctacggcttt
     1321 caggatgtcg gctttttcct tgctctgctt atcggtggtt acgaaaatgc atttgtaacc
     1381 ctttacacaa gcggccagtg ccagccccat gccggtattg ccgctggtgc cttccactat
     1441 ggttccaccg ggcttgaggc gtccatcctg ttcagccact tccaccatct tcagcgccat
     1501 gcggtctttg atgctgttgc caggattgaa gtaatctacc ttggccagca ctgtgcaggg
     1561 gaagtctttg gctactttgt tcagttgaat catcggcgta tcgccaatgg tttcgaggat
     1621 attttttttc cagggcatgc aacaacagtt tatgccggca aaagtatgtt ttaaggatta
     1681 ccgcttgtca tacatactgc taatgtgaac agcttgtggt gtctgtgaca tttgcggaca
     1741 atacctttac cgtccatgaa gcacctgaaa gcgctgaaca aatatttctg gaaataccgc
     1801 tatcgactcg tggccggtct ctgcttcatc atcgtttcca actacctggc catcctggcg
     1861 ccgcagatca ctgcatatgt ggtggacaaa gtgcagcact tgcttccggg agcggtacag
     1921 cggccgctgg cgcggcaaac cgatccactg gtcaatcttt tcattgacta cgtggagcag
     1981 ctcgattgga gtttttccgg gatcgtcacg ctttgcggca ttaccatttt gatgctggcc
     2041 attgttcgcg gcattttcat gttcttcatg cggcagacca ttattgtgat gagccgctac
     2101 attgaatacg atcagaagaa cgaggtgttt gcccactacc agcggctcga tacgcatttc
     2161 ttcaaaacgc atacagtggg cgatcttatg aaccgcattg cagaagatgt gagccgggtg
     2221 cgcatgtata ctggtcctgc cattatgtac ctggccaatg tggctacttt ggtggtgttt
     2281 gcggtgtaca atatgctggg caaaaatgtg gaactgactc tttattcgct ggctccgctg
     2341 cccatactgg ccgtggtgat ctacagggtg aataccattg tacaccggcg cagcgaaaaa
     2401 atacaggctt tgctgggaga ccttactacc aatgcgcagc agtcgtacag cggtatccgg
     2461 gtgatcaaga gttatgtgca ggaaaagaac atgctgcact tttttgacca gaatagcctc
     2521 aggtaccgcg acaatgccct gaaactggcc aaggtggatg cgttgtatta cccctccatt
     2581 cttttgctca ttggtgccag tactgtcatc accatcatga ttggtggtct gtattacctg
     2641 aatggaaaga tcagcgaggt gggtgtgatc gtggagtttg tgttgtacat caacatgctc
     2701 accttcccgg ttagtgccat tggatgggta gccagtatga tacagcgtgc agccgcttcg
     2761 caaaaacggc tgaatgaatt cctgcaactg gaacccacta ttgaaaaccc ggaaacggta
     2821 gccgcagcac catcgcccca atgcgaaatc gtatttgaaa atgtcagctt cacgtatccc
     2881 cacactggca ttactgccat tcgccatttc aacctgcgca tagcacccgg ccaaaaggtg
     2941 gcagtaattg ggaagaccgg cagtggaaaa tcgaccatcg ccaatttgtt gttgcgcttt
     3001 tatgatgtga acgagggacg tgttttactc gatggtgaag aggtgaaaaa ttatgacctg
     3061 gctgaattgc gcaaacgcat cag
//
LOCUS       DATIQF010000812         2113 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_225839,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000812 DATIQF010000000
VERSION     DATIQF010000812.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225839"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(86..1513)
                     /locus_tag="VLL95_13955"
     CDS             complement(86..1513)
                     /locus_tag="VLL95_13955"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="vanadium-dependent haloperoxidase"
                     /protein_id="HSR40013.1"
                     /translation="MISTTLLFRMRICVPILFILVSCQKQDFKGMDSAAMKSKVANAK
                     GLVSNEMVLHWNENTMKVLAVTPAPPPILSRYATMTQVAVHDALNAIKPKYKSYALVG
                     YRDKDADEQAAVISAAYWTMKSIDAYLKTLGPTGLPLQSAGNNWDGWYAASLQSIADG
                     EAKTKGIELGKRAAQAMMDKRANDGFITARIVYVPTTPPVTPPPPGTWRPTISAPPVP
                     SYHKGGLPNWPTHMKSFSGMEANAFRSAPPPDLNSTAYTNDFNEVKNLGARVNSTRTP
                     DQSQIANFWQEGPTQILNRMIRLAIMNKQMDVWRSARLLAMCNVSIFDGFLGVFDGLY
                     YYNRWRPETAIRLAANDGNDDTTPDETWLPFVTDIKLGSPPQTPTPPIPDYPNPNAAI
                     GQATANVLQYFFSTDNTDITLPSLDVMSAGQVRSYTSFQAAANDFAMSRMYAGFNFRY
                     SLNAGMQLGSQVAAYVVNNMFGENE"
     gene            complement(1601..>2113)
                     /locus_tag="VLL95_13960"
     CDS             complement(1601..>2113)
                     /locus_tag="VLL95_13960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40014.1"
                     /translation="VVLDGKGSTDDNMATLKLAWKQVAGPTAARIKEPNSITTSVSQL
                     VLGNYSFELRVTDEVNQTAVDTVHVVVSNPGEMEKNQVEIKSIDFLCPFGCSANINNY
                     KAYLPTGKTLLQVFVSPAGASSWDRVSRFADWTNPTAIFYFIYDGALSINSDNDSKYA
                     PKINIKLVYF"
BASE COUNT          519 a          462 c          526 g          606 t
ORIGIN      
        1 atgcattgct ttctttacag ttgcaattaa ataaaaagcc tgccctggca cagaatgccg
       61 ggcaggattt tgtctactgt attcgctatt cattttcgcc aaacatatta ttgactacat
      121 aggctgccac ctggctaccc agttgcatgc ctgcattgag gctgtacctg aaattgaagc
      181 cagcatacat tcgggacatg gcaaaatcat tggctgctgc ctggaaactg gtataacttc
      241 tgacctgtcc tgcactcata acatcaagac tgggaagggt gatgtccgta ttgtcggtac
      301 tgaagaagta ctgcaagaca ttggcggtag cctgcccaat tgctgcattc gggttgggat
      361 aatcaggaat ggggggagtc ggtgtttgcg gaggcgaccc aagctttatg tctgttacaa
      421 agggaagcca ggtttcatca ggtgtcgtgt cgtcgttacc gtcatttgcc gccaacctga
      481 tggctgtttc cggacgccag cggttgtagt aataaagccc gtcgaaaacg ccgaggaaac
      541 catcgaaaat ggagacatta cacatggcca acaacctagc gctgcgccat acatccattt
      601 gcttgttcat gattgcgagg cgtatcatcc tgttgagtat ttgtgtggga ccttcctgcc
      661 agaaattggc gatttgagat tgatcggggg tgcgtgtaga attgactctt gctccgaggt
      721 tttttacctc attgaaatca tttgtgtatg cggttgaatt taagtctggc ggcggagctg
      781 atctgaaggc gttggcttcc ataccgctga atgatttcat atgggttggc caattgggca
      841 aacctccttt atggtacgat ggaactggtg gcgcggaaat agttggtctc cacgtgcctg
      901 ggggcggagg tgtaacagga ggggtggtag gaacatacac aatgcgggca gttataaaac
      961 catcgttggc acgtttgtcc atcatggcct gtgccgccct tttacccagt tctatccctt
     1021 ttgttttggc ttcgccatca gcaatgcttt gaagagaagc ggcataccat ccatcccagt
     1081 tattgccagc actttgcaga ggcaagccgg ttgggcccaa tgtcttgaga taagcatcta
     1141 ttgacttcat tgtccaataa gcggcgctga tcactgctgc ctgttcgtca gcatccttgt
     1201 cgcgatagcc aaccagtgca tatgatttgt atttgggctt gatggcattc aaggcatcat
     1261 gtacggctac ttgcgtcatg gtggcatacc ttgaaagtat cggaggaggt gcaggcgtta
     1321 cggctaacac tttcatggtg ttttcattcc agtgaagcac catctcgttg ctcaccaatc
     1381 ctttggcatt tgccactttc gatttcatgg cggcagaatc catgcccttg aagtcctgct
     1441 tttgacaact gactaagatg aacaggattg gtacgcaaat gcgcattcgg aaaagaagag
     1501 tcgtgctgat cataattgaa ttgttttagg gagtgaaaaa aatggagtga aaaaacaaaa
     1561 gcgcctatta gtacatacac tgattagcct tggttatggt ttagaaatag acaagcttaa
     1621 tattaatttt gggagcgtat ttgctatcat tatcactgtt gatactaagg gcaccgtcgt
     1681 aaatgaagta aaagattgcc gtaggatttg tccagtcggc aaagcggctt accctgtccc
     1741 aggaagatgc acctgctggg ctgacaaata cctgaagaag tgtttttcca gtaggcaggt
     1801 atgctttgta gttattgatg ttagcactgc agccaaacgg gcataaaaaa tcaatgcttt
     1861 taatttccac ctggtttttt tccatctccc caggattgct cacgactaca tgcacagtat
     1921 caacagctgt ttggtttact tcatccgtta ctctcaattc aaatgaataa ttgccaagca
     1981 cgagttgtga aacggaagtg gtgattgaat ttggctcttt aattcttgcc gctgttggcc
     2041 cggccacttg tttccaggca agttttaagg tagccatatt gtcatctgtg gacccctttc
     2101 catcaaggac gac
//
LOCUS       DATIQF010000813         7110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_256088,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000813 DATIQF010000000
VERSION     DATIQF010000813.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7110
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256088"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1543)
                     /gene="aspS"
                     /locus_tag="VLL95_13965"
     CDS             complement(<1..1543)
                     /gene="aspS"
                     /locus_tag="VLL95_13965"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF001750.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HSR40015.1"
                     /translation="MYRTHTCGELRMEHAGTEVTLAGWVQTVRKFGAITFVDLRDRYG
                     ITQLVFAESLNEQLDNNPLGREFVLQAKGVVRERTSKNANIPTGDVEISVNAFSILNK
                     AATPPFTIQDDTDGGDDLRMKYRYLDLRRNAVKKNIELRYAVNRATRDYLHQNGFMDI
                     ETPFLIKSTPEGARDFVVPSRMNAGQFYALPQSPQTFKQLLMVSGYDRYYQIVKCFRD
                     EDLRADRQPEFTQIDCEMSFVEQNDILNMFEGLVKYIFKTVKGIDYNEAVQRMTYDDA
                     LWNYGNDKPDIRFDMKLLNLKKPHHVLVDYKDSRELIEGAGFGVFDNAETVLAIAVPG
                     AAEYTRKQIDELTEWVKRPQIGMQGLVNIKCNADGSFKSSVDKFYSEDKLKAIAEAAN
                     AKAGDLILILAGKEELTRKAMSTLRLEMAERLGLRNPEVFKMLWVIDFPLFEFALEDQ
                     DGGGAGRWVARHHPFTSPKPDHISIMIDNGPKVEDLDKYLEHPYARIKANAYDLVLNG
                     NEIGGG"
     gene            1891..5322
                     /locus_tag="VLL95_13970"
     CDS             1891..5322
                     /locus_tag="VLL95_13970"
                     /inference="COORDINATES: protein motif:HMM:NF012935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC oxidoreductase"
                     /protein_id="HSR40016.1"
                     /translation="MKVLSRPPEQIKQQYDVIVIGTGYGGSIAASRLARAGQKVCVLE
                     RGREFQPGEYPDTLVEATEQLQVHTAHAHRGSSTGLFDFHVHEGISVLVGCGLGGTSL
                     INANVAIKPEERVFDDPRWPETLRTEFDTPGSLLQKGFSLAVDMLKTKPLPDQYHPNK
                     LKALEFSAQSLGEKCYRTPINVNFEYNGPNHVGVHQQPCNMCGDCVSGCNVGAKNTLI
                     MNYLPDALAHGAEIFTEAPVSHIEKRGDKWLVHYSIAKSGEKLFNAPTLFVEANTIVL
                     AAGALGSTEILLRSRDKGLAVSGKAGESFSGNGDVLGFAYNTRHHIDGVGAGVHKIDD
                     EKMPGPCITGVIDLRHQPNLDDGMIIEDAAVPGAIGSLLPLTIDVENKIIGKVERQSW
                     DKGFFNRLRHEAATLVSDVRGPYYGAIRNTQSYLIMSHDGEHGKMALENDRLNIHWSQ
                     VGKEEIFQKADEQLRKETMALSGVYVKNPVWVKEMHNELVTVHPLGGCYMGETPDSGV
                     VNHKGQVFTGDASGSVHENFYVMDGSVIPRSLGVNPLLTICAVAERNCALMAADRGWN
                     IDYSFGKTLQASQEKEKKVGVEFTETMKGFFTKGVSNKDYQQGFEKGKVSNESFQFTL
                     TIRSDDVYEMIANAAHAAELSGTVTAPGLSPLPLAVSSGTFNLFVDDPNSVNTKLMNY
                     SMLLTSEQGNQYWFKGFKLVHHDRGLDEWPDTSTLYITIYDGKDDQSPVLGQGILHIE
                     LADFARQMRTMKAINQTSVAQGLKALADFGAYFSKSLFEVYGGVFAPNKFFDSTAPPR
                     KKRELRLDDPQYYPFKTSDGVELLLTRYNGGKKGPLLMVHGFSGNRLTFSIDTIDTNM
                     TEYFYAHGYDVWLLDYRLSNFLPSALKQHTVDEIARYDYPAAIETIRSNTGAAQVDVM
                     AHCVGSISLFMALLNGMPGVRSVVSAQIAAHFHPATQVKWKAGLHIPQVLDALGIHSL
                     TAYATENENWVSKIYDRAMALYAVPIAGYCNNPSCHRMTFMFGPLYEHSQLNDATHTA
                     MIEMFKEANMRTYEQLTLMIRAGHLLTAEGENVYMPHFSRLNIPITFIHGEKNQLFLP
                     QSTLDTYQQLCDTNGSHLYQHHIIPGYGHNDCMYGKNTADDVFPIILQHFEQFYK"
     gene            5380..6795
                     /locus_tag="VLL95_13975"
     CDS             5380..6795
                     /locus_tag="VLL95_13975"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HSR40017.1"
                     /translation="MPDVRYVVMSDLHLGAENSILTNLQDGSWETDTTKPSPVLVELA
                     RVLREVISKNEGPEKPVLVLNGDLMELALTSTDNAARAFMRFVEVMFPEGEENLFADT
                     ILFLAGNHDHNLWERSRNLRYNEYLDQLRPGEVIRDEKHCTDMLQHDTIHIPLLNVLA
                     RKYSNLKNVNIQGAYPAYAVLSENKHKAVIFCHGHYVESMYSLMTSLRSKIFPDRELP
                     AYFEDLEKENYAWVDFFWSTLGRSGSVGRDIGLIYDKLQDPQQVQLMINNLAENFTPA
                     HQSKIKHWIEKGIIHELLEITVGRMASNERNEPDVALTPDAENGLRILMERFVLYEFM
                     KGLDHKVPQDVTFLFGHTHKPFTRQFNFNGYQQPVKVFNSGGWVVDTMHQQPLHGGSV
                     LLVDDTLDVVALNMYREGNYHIAVEEFNHEGDEAHCPFYFKLQQIISDPNGPWAAFEA
                     AVKAAVEVRYSNLAGIAKSNN"
     gene            6807..>7110
                     /locus_tag="VLL95_13980"
     CDS             6807..>7110
                     /locus_tag="VLL95_13980"
                     /inference="COORDINATES: protein motif:HMM:NF019316.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7TM-DISM domain-containing protein"
                     /protein_id="HSR40018.1"
                     /translation="MPTRPFLPALCLLLFLQGLVVNVVAQSVITLSSEQPDLLIGKSV
                     YYLVDSNRNISFQAFASGRFDHQLNRYTMDAPNLGNKELAVWNKFTVVNKSDNQWVL"
BASE COUNT         1841 a         1809 c         1780 g         1680 t
ORIGIN      
        1 aaccaccgcc gatttcgttg ccattcagca ccagatcgta tgcattggct ttgatgcggg
       61 cataaggatg ttcgaggtat ttgtcgaggt cttccacctt gggtccgttg tcgatcatga
      121 tagaaatatg atcgggcttg ggactggtga aaggatggtg acgagccacc cagcgaccgg
      181 cgccaccgcc gtcctggtct tcgagggcaa actcgaacag cgggaagtcg atcacccaaa
      241 gcatcttgaa cacttcggga ttgcgcaggc ccaaacgctc tgccatttcg aggcgtaggg
      301 tgctcatggc ctttcgggtc agttcttctt tgccggccaa tatcaaaatc aaatcgcctg
      361 ccttggcatt ggctgcttcg gcaatggctt tcagtttgtc ttcgctgtaa aatttatcga
      421 cgctgctctt gaagctgcca tccgcattgc atttgatgtt caccaaaccc tgcatgccaa
      481 tctgcggacg cttcacccat tcggtcagct catctatttg cttgcgggtg tattcggcag
      541 caccgggcac ggcaatggcc agcacagtct ccgcattgtc gaatacgcca aaacctgcgc
      601 cttcaatcag ttcgcggctg tctttgtaat ccaccagcac atggtgcggc ttcttcaggt
      661 tcagcagctt catgtcaaag cggatatcgg gcttgtcgtt gccgtagttc cacaacgcat
      721 cgtcgtaagt catgcgctgc accgcttcgt tgtagtcgat gccttttacc gttttgaaaa
      781 tgtacttcac caagccctca aacatgttga ggatatcgtt ttgctccacg aaactcattt
      841 cgcagtcgat ctgcgtaaac tccggctggc ggtcggcccg caggtcttca tcgcggaagc
      901 attttacaat ttgatagtag cgatcgtagc cactcaccat cagcaattgc ttaaaggttt
      961 gcgggctttg cggcagcgca taaaactgcc cggcattcat gcggctgggc accacaaagt
     1021 cacgggcccc ttcgggtgtg ctcttgatga ggaagggcgt ttcaatatcc atgaagccgt
     1081 tctggtgcag gtaatcgcgg gtggcacggt ttaccgcata gcgcagttca atgtttttct
     1141 tcaccgcgtt gcgacgcagg tcgaggtagc ggtatttcat gcgcaggtca tcaccgccat
     1201 cggtatcgtc ctggatggta aaaggaggcg tagcggcttt gttcagaatg ctgaaagcat
     1261 ttactgagat ctccacgtcg ccggtaggaa tgttggcgtt cttgctggta cgctcccgca
     1321 ccacgccttt ggcctgcagc acaaattcac ggcccagcgg attgttgtcc agctgctcgt
     1381 tcaggctttc ggcaaacacc agttgggtga tgccatagcg gtctcgcagg tctacaaagg
     1441 tgatggcgcc aaacttgcgc actgtctgca cccagccggc cagggtcact tcggtgccgg
     1501 catgttccat tctcaattcg ccacaggtat gcgttctgta catgatgtat tgatgtatga
     1561 tttctgatct atgatgtctg atttaaggag tgaagtttcg ggtgtgaggc ctaaggatca
     1621 gtaatgaatc tctatggaaa ttgccactgc cagcgaggca caataccaca gaaaactaac
     1681 cctggaactc tggaacctgg aactctggga ccttttcagc ggccgcaaat gtaagccaat
     1741 ggcctattgc cttaccgcat ttcattgggt ctgattttga aatttccaat ggcgctcctg
     1801 ggatcaaaat ggcaaattgt atgatgtaat taactgattt gcaattgtca acacttagcc
     1861 ctacttttcg aaatcaccaa attcaccatc atgaaagtct tgtcacgccc cccggaacaa
     1921 atcaaacaac agtatgatgt tattgtaata ggaaccggat acggaggcag catagccgca
     1981 tcgaggctgg cccgtgccgg acagaaagta tgcgtactgg agcggggtcg cgaatttcaa
     2041 cctggcgagt accccgatac gttggtggaa gccaccgagc agttgcaggt gcatactgcc
     2101 catgcccacc ggggatcatc cacaggattg ttcgattttc atgtacacga aggcatcagc
     2161 gtgctggttg gatgcggcct gggtggcact tcactcatca atgccaatgt ggccataaag
     2221 cctgaagaaa gagtgtttga cgacccccgt tggccggaaa cactgcgaac agaatttgac
     2281 acaccaggca gccttttgca aaaaggtttt tcgctggcgg tagatatgct gaaaacaaaa
     2341 ccgctgcccg atcaatatca tcccaataaa ttgaaggcat tggaattctc ggcccagtcg
     2401 ttgggcgaaa aatgctaccg cacccccatc aatgtcaatt ttgaatacaa tggccccaac
     2461 catgtgggcg tgcaccaaca accatgcaac atgtgtggtg attgcgtttc tggctgcaac
     2521 gttggcgcaa aaaacacact catcatgaat tatctgcccg atgcattggc acacggggcg
     2581 gaaatattta ccgaagcacc ggtaagccat attgaaaagc ggggcgacaa atggctggtt
     2641 cattactcga tcgccaaatc cggagaaaag ctcttcaacg cgccaacact ttttgtggaa
     2701 gccaacacca ttgtgctggc ggcaggcgct ttgggttcta ccgagatact gctccgttcg
     2761 agggataaag gacttgccgt ttcaggcaaa gcgggtgaaa gtttttcagg aaatggggat
     2821 gtgctgggat ttgcctacaa cacccgtcat cacattgatg gcgtaggtgc aggggtgcac
     2881 aaaatagacg atgaaaaaat gcctggcccc tgcattaccg gcgttatcga cttgcgtcac
     2941 cagcccaacc tcgatgatgg aatgatcatt gaagatgcag ccgttcccgg cgctattggt
     3001 tcattgcttc ctctcaccat tgatgtcgag aacaaaatca ttggcaaagt ggaaaggcaa
     3061 agctgggaca aaggattttt taaccggctt cggcatgaag ccgctacatt ggtatcggat
     3121 gtgagagggc cttactatgg cgccattcgc aatacacagt cctacctgat catgtcgcac
     3181 gatggcgaac atggaaaaat ggcactggaa aacgatcgcc tcaatattca ctggagccag
     3241 gtaggcaaag aagagatatt ccaaaaagcc gatgagcaat tgcgcaaaga aacgatggcc
     3301 ctgtcgggcg tgtatgtaaa aaacccggtt tgggtgaaag agatgcacaa cgaattggtg
     3361 actgtacacc cgctgggcgg ctgctacatg ggcgaaacac ccgacagtgg tgtcgtcaat
     3421 cacaaagggc aggtattcac cggtgatgca tccggcagcg tgcatgaaaa tttctacgtg
     3481 atggatggtt cggttatacc gaggtcgttg ggcgtaaacc ctttgctcac catttgcgcc
     3541 gttgccgaac gcaattgcgc tttgatggca gccgaccgcg gctggaacat cgactacagc
     3601 tttggaaaaa cactgcaagc atcacaggaa aaagagaaaa aagtaggagt tgaattcacc
     3661 gaaaccatga aaggtttctt taccaaaggt gtaagcaaca aagattacca gcagggtttt
     3721 gaaaaaggaa aagtcagcaa cgaatctttt cagtttacac ttaccatcag gagcgatgat
     3781 gtttatgaaa tgattgccaa tgccgcacat gccgccgaac tgagtggcac ggtaaccgct
     3841 ccgggcttat cgcccttgcc gctggcggtt tcatctggca ccttcaattt gtttgttgac
     3901 gatccgaaca gcgtaaacac caaattgatg aattactcca tgctgttgac cagcgagcaa
     3961 ggcaatcaat attggttcaa aggattcaaa ctggtgcatc acgaccgcgg gctcgatgaa
     4021 tggcccgaca cctctaccct ttacatcacc atttacgatg gaaaagatga tcaaagcccc
     4081 gttttgggtc agggcatatt gcacattgaa ctggccgatt ttgcccgaca gatgcgcacc
     4141 atgaaagcga tcaaccaaac atctgtagca caaggcctga aagccctggc cgattttggc
     4201 gcttatttct cgaaatcact ttttgaagtg tatggcggtg tgtttgcccc caacaaattc
     4261 ttcgattcga ctgccccgcc gcgaaaaaaa cgcgaactga gactcgatga tccgcaatac
     4321 tatccgttca aaaccagcga tggcgtcgaa ctgctgctca cccggtacaa tggcggcaag
     4381 aaagggccac tgctcatggt gcacgggttt agtggcaaca ggctcacctt cagcatcgat
     4441 accatcgaca ccaacatgac ggagtatttc tatgcacacg gttatgatgt gtggttatta
     4501 gactatcgcc tgagcaattt tcttccttct gccctgaagc aacatactgt agatgaaata
     4561 gcccgttacg attaccctgc ggccattgaa accatcagga gcaacaccgg ggcagcacag
     4621 gttgatgtaa tggcccattg tgtaggatcc atttctctgt tcatggcatt gctcaatggt
     4681 atgcccgggg taagatcagt ggtgagtgca caaatagcgg cgcacttcca tcctgccacg
     4741 caggtaaaat ggaaagccgg gcttcacatt ccgcaggtgc tcgatgcact gggtatccat
     4801 tcgctcactg catatgccac cgaaaacgaa aactgggtat caaagatcta cgacagagcc
     4861 atggcgcttt atgcggtacc cattgccggt tattgcaaca atccatcgtg ccaccgcatg
     4921 acgttcatgt ttggtccatt gtatgaacac agccaactga acgatgctac gcacactgcc
     4981 atgatagaaa tgttcaaaga ggccaacatg cgcacttatg agcaactcac cctgatgata
     5041 agggctggcc acttgcttac ggctgaaggt gaaaatgttt atatgcctca tttcagcagg
     5101 ctcaatatcc ccatcacctt tatccatggc gaaaagaatc aactcttttt gccccaaagt
     5161 acgctggata cctaccagca gctgtgcgac accaatggca gtcatttgta ccagcaccat
     5221 atcatacccg gctatgggca caacgactgc atgtatggaa agaacactgc tgatgacgtt
     5281 ttcccaatca tcctgcagca ttttgaacaa ttttacaaat aggccaatac attcaccgga
     5341 acccggtcac cacccgatca aaaacaacaa tccttagtta tgccagatgt acgatatgtg
     5401 gtcatgtccg accttcacct gggtgctgaa aacagtatcc ttaccaacct gcaggatgga
     5461 agttgggaaa cagacaccac gaaacccagc cctgtattgg tggaacttgc ccgggtgctg
     5521 cgggaggtga tcagcaaaaa tgaaggtccc gaaaaaccag tgcttgtgct gaatggcgac
     5581 cttatggaac tggcactcac cagcactgac aatgctgcgc gggccttcat gcgatttgtg
     5641 gaggtcatgt ttccggaagg agaagaaaac ctgtttgccg acaccatcct gttcctggcg
     5701 ggcaaccatg accacaacct gtgggaaaga agccgcaacc tgaggtacaa cgaatacctg
     5761 gaccagttgc ggccgggtga agtcatcagg gatgagaagc actgtaccga catgctgcaa
     5821 cacgacacca tccacattcc attgctgaac gtgctggcca ggaaatactc caacctgaaa
     5881 aacgtaaaca tccagggcgc ctaccctgcc tatgccgtgt tgagcgaaaa caaacacaag
     5941 gcggtgattt tttgccatgg acattatgtg gaatcgatgt actcgctgat gaccagcctg
     6001 cggtcaaaaa ttttccccga ccgggagttg cccgcctatt ttgaagacct ggaaaaagag
     6061 aactacgcct gggtggattt tttctggagc actcttggtc gctctggttc tgtaggccgc
     6121 gacatcggcc tgatttacga caaattgcag gacccgcagc aggtgcaact gatgatcaac
     6181 aaccttgccg agaattttac accagcccac caatccaaaa taaaacactg gattgaaaag
     6241 ggcatcatcc acgagttgct cgaaataacc gtggggcgca tggccagcaa tgaaagaaac
     6301 gagccggatg tagcccttac acccgacgct gaaaacggtt tgcgcatcct gatggaaaga
     6361 tttgtattgt atgagttcat gaaaggtctt gatcacaaag taccgcagga tgttaccttt
     6421 ctttttggcc atacccacaa gccatttacg cggcaattca acttcaacgg ttaccagcag
     6481 ccggtgaaag tgttcaacag cggaggctgg gtggtggata ccatgcacca gcagccactg
     6541 catggcggat cggtgctgct ggtggacgat acactggacg tggttgcatt gaacatgtac
     6601 cgcgaaggaa attaccatat agccgtggaa gaattcaacc atgagggaga tgaggcccat
     6661 tgcccctttt atttcaaact tcagcaaatc ataagcgacc ccaacggccc atgggcagct
     6721 ttcgaggcgg cggtaaaagc ggctgttgag gtaaggtatt caaacctggc tggtatagcc
     6781 aaaagcaaca attgaatgaa gaacctatgc caacccgccc atttttaccg gctctttgcc
     6841 tgctgctgtt tttgcaggga ctggttgtaa atgtcgttgc gcaatcagta attacccttt
     6901 ccagcgagca gcccgattta ttgattggca aaagcgtgta ctacctggtt gacagcaacc
     6961 gaaacatctc attccaggca tttgccagcg gccggttcga ccaccagttg aaccgctaca
     7021 ccatggatgc ccctaacctt ggcaacaagg aattggccgt ttggaacaag tttacagtag
     7081 tgaacaaatc ggacaatcaa tgggtattgg
//
LOCUS       DATIQF010000814         4919 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_164891,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000814 DATIQF010000000
VERSION     DATIQF010000814.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4919
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164891"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1039
                     /locus_tag="VLL95_13985"
     CDS             <1..1039
                     /locus_tag="VLL95_13985"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSR40019.1"
                     /translation="LLNAGDYDNQTSMGDSRKFFINNFSRVNTIPESVLMDNTGKKIM
                     QLEKADFNSLFAAGYKFPEPFKVKADDGITDLYGVMYKPFDFDSTKKYPLIEYVYPGP
                     QTEAVNKAFGRGMDRTDRLAQVGFVVVTIGNRGGHPSRSKWYHNYGYGNLRDYGLADK
                     KAAAEQLADRYSFIDINRVGIHGHSGGGFMSTAAMLVYPDFFKVAVSSAGNHENNIYN
                     RWWSEKHHGVKEVISAKGDTSFVYQVEKNPELAKNLKGKLMLSTGDIDNNVHPANTIR
                     MANALIKANKRFEFVLLPGQRHGYGDMTEYFFWKMADYFSEHLLGHSDRPTDMVEMQK
                     EIEQSGNKKKN"
     gene            1128..1706
                     /locus_tag="VLL95_13990"
     CDS             1128..1706
                     /locus_tag="VLL95_13990"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin-like family protein"
                     /protein_id="HSR40020.1"
                     /translation="MKTSSLLLLLTLVAIGSIAQSKELVAGEKAPSFTASNQRGKMVD
                     LSDMLEQGKTVVIFYRGYWCPYCNKQLKDYEDSLQLIKAKGANLVAITPELPAYVQKT
                     IAKTKASFNIISDKDQTIMKSYGVAFTLDEQALSRLQRVGVDLKETNGNNSNMLPVPA
                     VFVVNQKGIIEYVYFDPNYRNRLSVKELLTHL"
     gene            1876..3267
                     /locus_tag="VLL95_13995"
     CDS             1876..3267
                     /locus_tag="VLL95_13995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40021.1"
                     /translation="MTVIVQPWSLYFQNDDFIYVSKAPLGHYLYRTAFRPVSDLTLRA
                     DYFFYGKNGGGFHVSNLLFHFLASVLLFFTARKWQRALKVATEYSAIAHMAGLLFLVY
                     PFHSESLLWTIGRGGSLVTIFFLGALNLILTEPLRWQHWFGANLAFVIGLFTYESIWL
                     LPLVATLLVWIKNDRIRANALEIRGLLIMWALLIISFAARKVLINDFIGSPYLNTTHF
                     ELSPLKQAYKFATGFCRSFLPPMENSSWFLAASSMLILALALILFRFLKTSQRRLQAN
                     TPLIIFLVTLLPVSILAVNTHTTESERFLYLPSAFLCLQAAVWINALATGWKRWIVLG
                     VLGGYSVFYLNDASKQFRMAGNWNKTTLQEIARHEGQYKTVHVHELPASYKGAFMFRL
                     GFEEALQWMCPGVQFDTLVIHSQQVVSKPEPLQVITAPDNEMKHLITNEASANSLYII
                     WNGSRLFVGSRKP"
     gene            complement(3264..4118)
                     /gene="rfbD"
                     /locus_tag="VLL95_14000"
     CDS             complement(3264..4118)
                     /gene="rfbD"
                     /locus_tag="VLL95_14000"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: protein motif:HMM:NF016228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008831 - dTDP-4-dehydrorhamnose reductase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HSR40022.1"
                     /translation="MKVLVTGANGQLGKCLKDVAHLYPGTQFLFMGRENFALEQFEMV
                     RTVLESVRPDWVINAAAYTAVDKAEVETTLAFLINGESVGHLAAVCAANEIRLLNVST
                     DYVFDGTKSSPYLETDTTNPIGVYGASKLQGENLCLHHAPDSIVVRTSWVYSQHGHNF
                     VKTMLRLMGERDAINVVNDQHGNPTYAIDLAAALLQIVHHKSPASGIYHFSNSGPITW
                     FQLATAIKELTGSHCQVNPITTEQYPTPAKRPAWSVLSNEKIQHTFGIVQQDWHLSLQ
                     HCLKALGH"
     gene            complement(4131..>4919)
                     /locus_tag="VLL95_14005"
     CDS             complement(4131..>4919)
                     /locus_tag="VLL95_14005"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HSR40023.1"
                     /translation="RTIVKVVSGCDSESLEQIARVYELVVDAGVHRASSIKVAEAAKI
                     IENTQRDLNIALMNELSIIFDKMGINTFEVLEAAGTKWNFLKFYPGLVGGHCIGVDPY
                     YLTYKAAELGYSSKVILSGRMINDGMGAYVARKILMHIIKYNGNVKEARVLVMGATFK
                     ENVSDIRNSKVSDVVKELQNYSINVEVVDPHASSEELQHEYGFGLVAAPTGEYDAIVL
                     AVSHNEYAALPVDFFSKNTKSFGLIADLKGLLRHKISERHYWSL"
BASE COUNT         1283 a         1218 c         1121 g         1297 t
ORIGIN      
        1 actgttgaat gccggcgatt acgacaacca aacgagcatg ggtgacagcc gcaaattttt
       61 catcaacaat ttctctcgtg tcaataccat ccccgaatcg gtgctcatgg acaataccgg
      121 caagaaaatc atgcagttgg agaaagcgga tttcaactcc ctgtttgccg caggatacaa
      181 attccctgag cctttcaaag tgaaagctga tgatggcatc actgatctct atggggtgat
      241 gtacaagcct tttgatttcg actctaccaa aaagtatcca ttgattgagt acgtatatcc
      301 cggcccgcag acagaagccg tgaataaggc atttggccgt ggcatggatc gaactgaccg
      361 cttggctcaa gtaggtttcg tggtagtcac tattggcaat cgtggtggtc accccagcag
      421 aagcaagtgg tatcataact atggctacgg caacctgcgt gattatggcc tggccgacaa
      481 aaaagcggca gccgaacaat tggccgatcg ctattcattc atcgacatca accgcgtagg
      541 cattcatggc catagtggtg gaggttttat gagtactgca gccatgttgg tgtatcccga
      601 ctttttcaaa gtggccgtat ctagtgccgg caaccacgaa aacaatattt acaaccgttg
      661 gtggagcgaa aaacaccatg gcgtaaaaga agtgatctcc gccaaaggcg acaccagttt
      721 tgtgtaccag gttgaaaaga atccggaatt ggcaaagaat ttgaagggta aattaatgct
      781 gtccaccggt gacattgata acaacgtgca tcctgccaat accattcgta tggccaatgc
      841 attgataaag gccaacaagc gattcgagtt tgtattgtta ccagggcagc gacatggata
      901 cggtgatatg acagaatatt tcttctggaa aatggccgat tacttcagcg aacacctgtt
      961 gggccatagc gaccggccta cggatatggt agaaatgcaa aaggaaatag aacaaagcgg
     1021 caacaaaaag aaaaattaga atagcgtaat accatcaaaa gcgttgccgg catttgaaaa
     1081 gctggcaacg ctttttcatt cttcaacgct tacctttaag caacgctatg aaaacatcat
     1141 ccctgcttct tttactgacc ctcgttgcaa tcgggagcat tgcacagtcc aaggaactgg
     1201 tggctggtga aaaagcccct tcattcaccg cctccaatca acgcggcaag atggtggacc
     1261 tttcggacat gctggaacaa ggaaaaacgg tagtgatttt ctacagaggc tactggtgtc
     1321 cctactgcaa caaacaattg aaagattacg aagactcgct gcaattgatc aaggcaaaag
     1381 gagccaattt agtggccatc acccccgaac ttccggcata cgtgcaaaag accattgcca
     1441 agactaaggc cagtttcaac atcatcagcg acaaagatca aaccatcatg aaatcgtatg
     1501 gcgtggcgtt tactttggat gaacaagctt tatcgcgttt gcagcgtgta ggcgttgatc
     1561 tgaaagaaac caatggcaat aacagcaaca tgcttccggt acccgccgtg tttgtggtaa
     1621 accagaaagg catcattgaa tatgtatact ttgaccccaa ctaccgcaac aggctaagtg
     1681 taaaggaatt gcttactcac ctgtaaccaa agcctgcgtt gcattttgac ttgtgtatcc
     1741 tacttttccg tgaaattatt aattgggaaa agcttcggcg ccaccattca ttcgctttaa
     1801 gtgcttcacg aaaagtccaa catattatcg caaaggtcgc catggacctg gatctggctt
     1861 ggcacaatgc ttttagtgac tgtaattgtc cagccgtggt cgctttattt tcaaaatgat
     1921 gatttcattt atgtttccaa agcgccttta ggccattacc tgtaccgtac tgctttcagg
     1981 cccgtgtcgg acctaacatt gcgggctgat tattttttct acggcaaaaa tggcggaggc
     2041 tttcatgtaa gcaatttact cttccacttc ctggccagtg ttttgctttt ttttacagcc
     2101 cgcaaatggc agcgagcatt gaaggttgca actgaatata gcgccatcgc acatatggca
     2161 gggctattgt tcctggtata cccttttcac agcgaatcgt tgctgtggac catcggtcgt
     2221 ggcggctcgc tggtcaccat ctttttttta ggcgctctca atttgatatt aactgaaccc
     2281 ctgcgatggc agcactggtt cggtgccaat cttgcctttg taattggctt gtttacctat
     2341 gaatcgatct ggctcttacc cctggtggct accctgttgg tttggatcaa aaatgatcgc
     2401 atcagggcaa acgccctgga aataagggga ttgctcatca tgtgggcctt gctgatcata
     2461 tcctttgctg cacgcaaagt tctgatcaat gattttattg gatcacccta tctcaatacc
     2521 actcatttcg agttaagccc cttaaagcaa gcttacaaat ttgccacagg gttttgccgg
     2581 agttttcttc cgcctatgga aaacagcagt tggttcctgg cagcctcctc gatgctgata
     2641 cttgcgctgg cattgattct gttccgcttc ctgaaaactt cacaaagacg cctgcaggca
     2701 aatacccccc ttatcatatt cctggtcaca ttattgccgg taagcatcct tgcggtaaac
     2761 acccacacta ctgaatcaga acgattcttg tacctgcctt cagcattctt atgcctgcag
     2821 gcagccgtct ggatcaatgc cttggcaact ggctggaaac gctggatagt actgggtgta
     2881 ttgggcggct actcggtttt ttacctgaac gatgcctcaa aacaatttag aatggctgga
     2941 aactggaaca agaccacgct gcaggaaata gccaggcatg aaggccagta caaaaccgtt
     3001 cacgtgcatg aactgccggc ctcttacaaa ggtgctttta tgtttcgtct tggttttgaa
     3061 gaagccttgc aatggatgtg cccgggcgtg caattcgata cgctggtcat tcatagccag
     3121 caagtggttt ccaagccgga gccactgcaa gtcattaccg ctcccgacaa cgagatgaag
     3181 cacctaatta ccaatgaggc aagtgccaat tccctgtata taatctggaa tggaagccgg
     3241 ctgtttgtag gctcccgcaa accttagtgc cccaatgctt tcaggcaatg ctgcaaactc
     3301 aggtgccagt cctgctggac tataccaaaa gtatgctgga ttttttcatt gctcagcaca
     3361 ctccatgccg gccttttggc aggtgtagga tattgctcag ttgtgatggg attgacctgg
     3421 caatgactcc ctgtcaattc tttaatggct gtagccagct gaaaccaggt aatgggacct
     3481 gaattgctga aatgatagat cccgctggca gggcttttgt gatgcacgat ttgcagcagc
     3541 gccgcggcaa gatcaattgc ataggttgga ttcccatgct gatcattgac aacattaatg
     3601 gcatctcttt cacccatcag gcgaagcatg gttttcacaa aattgtggcc gtgctggctg
     3661 tatacccagg aagtacgcac cacaatggaa tccggtgcgt gatgcaggca caaattttca
     3721 ccctgcaatt tggatgcccc gtacacacca ataggattgg tggtgtccgt ttccaaatag
     3781 ggagacgatt ttgttccatc aaaaacatag tcggtggaaa cgttcagtaa ccgaatttca
     3841 ttggctgcgc aaacagctgc caaatgccct accgattcac cattgatgag aaacgccagt
     3901 gtggtttcga cctccgcctt gtcgactgcc gtataggcgg cggcattgat cacccaatca
     3961 ggtcgtactg attcaagaac tgttcgtacc atttcaaact gctccagggc aaaattctcc
     4021 cggcccatga acaggaactg tgtacccgga tacaaatgcg ccacatcttt caggcacttg
     4081 cccagttggc cattggctcc tgttaccagc actttcatga caaagcagat ttacaaactc
     4141 cagtaatgac gttcagaaat tttgtgacgc agcaggcctt tcaggtcagc aatcaaacca
     4201 aatgatttgg tattcttact gaagaagtcc accggcaaag ccgcatactc gttgtgcgat
     4261 acagcaagca ctatggcatc gtattcgcca gtgggcgctg ccaccaggcc aaatccatat
     4321 tcgtgctgca gttcctcact gctggcgtgt gggtctacca cttctacatt gatggaataa
     4381 ttctgcagtt ccttcaccac atcgctcacc ttgctgttgc ggatgtcgct tacattttct
     4441 ttaaatgtag cacccattac cagcacccgg gcttccttca cattgccgtt gtacttgatg
     4501 atatgcatga ggatcttacg agccacatag gcacccatgc catcattgat cattcggccg
     4561 gacaaaatca cttttgagct gtagcccaat tcagccgctt tgtacgtgag gtaataagga
     4621 tctacgccta tgcagtgccc gccaacgaga ccggggtaaa acttgaggaa gttccatttg
     4681 gtgccggccg cctccaatac ttcgaatgta ttgatcccca ttttatcgaa aatgatagac
     4741 aattcattca tcagggcaat gttgaggtca cgctgcgtat tctcaatgat ttttgccgct
     4801 tcagcaacct tgatggaaga tgcccggtga acacctgcat ctactaccaa ttcgtatacc
     4861 ctggcaatct gctccaggct ttccgagtcg cagccactca ccactttcac gatggttcg
//
LOCUS       DATIQF010000815         3692 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_210751,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000815 DATIQF010000000
VERSION     DATIQF010000815.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3692
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210751"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            163..588
                     /locus_tag="VLL95_14010"
     CDS             163..588
                     /locus_tag="VLL95_14010"
                     /inference="COORDINATES: protein motif:HMM:NF039408.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6326 family protein"
                     /protein_id="HSR40024.1"
                     /translation="MSNPKTFSEAPVNLRIKLAGLWTAVMFCYIYGDYFELYVPNKVA
                     GLLDGNNLLNTPTNLLLATIMLSIPALLIFLNLVLKPQACRWLNIIWGVFFTAIMALI
                     AVTSLTAWRAFYVYLALVECILTALVVWYAWHWPRADKT"
     gene            646..1314
                     /locus_tag="VLL95_14015"
     CDS             646..1314
                     /locus_tag="VLL95_14015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40025.1"
                     /translation="MNRSLWAIIGVFIFCQLPAQKIKLNSETLEAVKVYMSFDKGMGN
                     NVLKVIKDSMVKEVDEPTFVKIKGIEFGNGSIEVKVLSRLLPNASDLARGFIGIAFRI
                     DPNNTRYECIYLRPTNGRANDQVRRNHAIQYYSYPNYKFDRLRKEAPERYESYADMEL
                     NKWITMRIEVNGATARLFLDNNPQPSLIVNDLKHGADTSGTIALWVDVGTEGYFKDLK
                     VSKH"
     gene            1426..2376
                     /locus_tag="VLL95_14020"
     CDS             1426..2376
                     /locus_tag="VLL95_14020"
                     /inference="COORDINATES: protein motif:HMM:NF017206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NmrA/HSCARG family protein"
                     /protein_id="HSR40026.1"
                     /translation="MSNKKIITVFGATGAQGGGLVKAICADPNSAFTARAVTREPDSD
                     KGKALAALGAEVVYGDLSDEASVHKALEGAYGAFFVTFFWAHFNPEQEKAEAALFAKA
                     AKQAGIQHAIWSTLEDTRELVPISDNRMPNIHDIYKVPHFDAKGESNRHFTEAGVPTT
                     FLYCSFYWENFIYFGLGPKRGPDGKLAITLPIGDSKMAGVGTDDIGKCAYGIFQNRDQ
                     YIGKHVGVAGEHLTGQEMADAFSKALGEPVVYNKVSADVYRGFGFPGAVELGNMFQIY
                     DEFAAPLNTLRSVETSRQLNPALQNFEQWLSKNAAKVPLS"
     gene            complement(2369..2491)
                     /locus_tag="VLL95_14025"
     CDS             complement(2369..2491)
                     /locus_tag="VLL95_14025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40027.1"
                     /translation="MEFTIWEKAGGEWEDSDIVTRQMIVLPLSMIYKYEVSFLN"
     gene            2490..3155
                     /locus_tag="VLL95_14030"
     CDS             2490..3155
                     /locus_tag="VLL95_14030"
                     /inference="COORDINATES: protein motif:HMM:NF016840.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF664 domain-containing protein"
                     /protein_id="HSR40028.1"
                     /translation="MKNNSSTPRRGFLKSTTLLASATFGLASIPLGAMAEGLPPDDRD
                     NVIGPRSGFSPHVGTLLSMMTWMRRVILMPVRGLTVDQLDFLNDDQSNSIGSMLLHLA
                     ATERFYQIHTFDGKKWGDWPEKDQKRFGVAMALGTEARKTIKGNSLDFYTSTLQEVRE
                     NTINEFRKRGDDWLFSVDEKWPWGPTNNYCKWFHVCEHESNHNGQIKYIKSRLPGAKA
                     GND"
     gene            3466..>3692
                     /locus_tag="VLL95_14035"
     CDS             3466..>3692
                     /locus_tag="VLL95_14035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HSR40029.1"
                     /translation="MQHLGKIIIGITVIITAFILSAAWKYKFKGDETIVVTGLSEKDF
                     VSDMVVWRGSFSQTSMDLRSAYQAIKENEKAV"
BASE COUNT          941 a          948 c          896 g          907 t
ORIGIN      
        1 tgggttatct caccaacctc tgtggccata ccttatggcc caactacgac caactgggca
       61 tcagccaata catcggcctg ccagcttcgc tcggcgaaat aggcacctgc ctgtggctgc
      121 tgattgccgg cgtaaagaac accaccaaac ctgctgcctg atatgtcaaa tcctaaaacc
      181 ttttccgaag cgcctgtcaa cctccggatt aaactggccg gcttatggac ggcggtgatg
      241 ttttgctaca tctatggcga ttattttgaa ttgtacgtac ccaacaaagt ggctggactc
      301 ctggatggca acaacctgtt gaataccccc accaacctct tgctggctac catcatgctc
      361 agcattccgg cactgctcat ttttctgaac ctggtgctga agccgcaggc ctgccgctgg
      421 ctcaatatca tttggggtgt tttcttcacc gccatcatgg cactcattgc cgtcacctcg
      481 cttacagcat ggcgtgcatt ttatgtgtac ctggcgctgg tggagtgcat actcactgcc
      541 ctggtggttt ggtatgcctg gcattggccc cgcgccgata aaacctgagg ccatgctctg
      601 cacaaataga gaagcttcgt tccattttat caataccttt ctttcatgaa tagatcccta
      661 tgggccatca ttggcgtttt cattttttgc caattacctg cacaaaaaat aaagctcaac
      721 agcgaaaccc ttgaagcggt aaaagtttat atgtcatttg acaaaggcat gggtaataat
      781 gtgctcaagg tcattaagga ttctatggta aaagaggtgg acgagcctac gtttgtaaag
      841 atcaagggca ttgaattcgg caatggctct atcgaagtga aagtgctgag caggttgctg
      901 cccaacgcct ccgatttagc ccgagggttt attggcattg cctttcgcat cgatccaaat
      961 aacacccgct acgaatgcat ctatttgcgc cccaccaatg ggcgggccaa tgaccaggtg
     1021 cgtcgaaacc atgccatcca atactattct tatccgaatt acaaatttga ccggctgcgc
     1081 aaagaagcgc cggaacgcta cgaatcttat gccgatatgg agctgaacaa gtggatcact
     1141 atgcggattg aagtgaatgg cgccacagcc cgactattcc tggacaataa cccacaaccc
     1201 tccttaatag tgaacgacct gaagcatggt gccgatactt cgggcaccat tgccttatgg
     1261 gtagacgttg gcacagaagg ctatttcaaa gacctgaagg tttccaagca ttagtaatcc
     1321 tggtagtagc cactcccaat ccttggtatt tgtattgatg aagccgcatt ggcttttctt
     1381 ttggcgggaa aaagaatatc ttatgagcct taatcacaaa aaatcatgtc aaacaaaaag
     1441 atcatcaccg tatttggcgc caccggtgcg cagggcggcg gcctggtaaa agccatttgc
     1501 gccgacccga attcagcatt tacagcccgt gccgtaaccc gcgaacccga ttcggacaaa
     1561 ggcaaggcgc tggcagccct tggtgctgag gtggtatatg gcgacctgtc ggatgaagca
     1621 tcggtacaca aagcactgga aggggcttat ggtgcctttt tcgtcacttt cttctgggca
     1681 catttcaacc cggagcagga gaaagccgaa gccgccctgt ttgccaaagc ggcgaaacag
     1741 gccggcatac aacatgccat ctggtcgacg ctggaagaca cccgtgaact ggtgccgatc
     1801 agcgacaatc gcatgcccaa tattcacgac atctacaaag tgccgcattt cgatgcgaag
     1861 ggagaatcga acaggcactt cacagaagcc ggcgtaccca ccacctttct ttattgttcc
     1921 ttctactggg aaaatttcat ctattttgga ttaggcccca agcggggacc ggatggcaag
     1981 ctggccatca ccctgcccat tggcgattcg aaaatggcgg gcgtgggcac tgacgatatc
     2041 ggcaaatgcg cctacggcat attccaaaac cgggatcaat acattggcaa acatgtgggc
     2101 gtggctggcg aacacctgac tggccaggaa atggccgatg ccttttccaa ggcgctgggc
     2161 gaaccggtag tttacaacaa agtatcggcc gatgtgtacc ggggatttgg ctttcccggt
     2221 gcggtagagt tgggcaatat gttccagatc tacgatgagt ttgcagcgcc cctcaacacc
     2281 ttgcgcagcg tggaaacctc aaggcaacta aatcctgcgc tgcagaattt tgaacaatgg
     2341 ctttcgaaaa atgccgccaa ggtcccgctc agttgaggaa actgacttca tacttgtaaa
     2401 tcatggacaa tggcagtaca atcatttgcc tggttacaat gtctgaatcc tcccactctc
     2461 ctccagcttt ctcccaaatt gtgaattcca tgaaaaacaa ttcatccacc ccccgaaggg
     2521 gattcctcaa atctaccacc ctcttggcgt cagccacttt tggactggcc agcattccac
     2581 ttggcgcaat ggctgaaggc ttgccgcccg atgatcgcga caacgtgatt ggtccgcgat
     2641 caggattttc gcctcacgtt ggcaccctcc tgtcaatgat gacatggatg cgcagagtaa
     2701 tactgatgcc agtcagggga ttgactgtgg atcaactcga tttcctgaat gatgatcaat
     2761 ccaactccat tggttctatg ctgttgcacc tggcggctac cgagcggttt taccagatcc
     2821 acacattcga tggaaagaag tggggcgatt ggccggaaaa agatcaaaaa cgttttggtg
     2881 ttgccatggc cctgggaact gaagccagga agacgatcaa aggaaacagc cttgactttt
     2941 atacgagcac gctgcaggaa gtaagggaga acaccatcaa cgaattcagg aaacggggtg
     3001 atgactggct tttttcggtg gacgaaaaat ggccgtgggg acctaccaat aactattgca
     3061 agtggtttca tgtttgcgag cacgaatcaa accacaacgg ccaaatcaaa tacatcaaaa
     3121 gcagactgcc tggtgcaaaa gccggcaatg actgatttca ttgattaaag atggcggttt
     3181 ccttgttgcc cttgcagcgg gtgaaccgcc attgccactg caatggctcc tccgaagtgg
     3241 tggtgggctt ttcatggata cgtcttttca atgtcattta ccgcagcggc aaatttccaa
     3301 ggtgcattta ccggtaggca aactggctca cctccattgt ccgttttgta ctgctgtcag
     3361 taagaacttg cgctgacgac gcctggttta agctctatcc cttgtttctt ttagcattgc
     3421 tttcatacaa ttatggcgta gcttgagatt gaaaatgcac ctttcatgca acacctcgga
     3481 aagatcatca tcggcattac cgtcatcatc actgccttta ttttgtcggc agcctggaaa
     3541 tacaaattca aaggcgatga aaccattgtg gtgacaggcc tctccgaaaa agatttcgtc
     3601 agcgatatgg tggtatggcg gggcagtttc tcgcaaacca gtatggatct gcgcagcgct
     3661 taccaggcca tcaaggaaaa tgaaaaagca gt
//
LOCUS       DATIQF010000816         2727 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_73637, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000816 DATIQF010000000
VERSION     DATIQF010000816.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2727
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73637"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            114..>2727
                     /locus_tag="VLL95_14040"
     CDS             114..>2727
                     /locus_tag="VLL95_14040"
                     /inference="COORDINATES: protein motif:HMM:NF040138.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HSR40030.1"
                     /translation="MLPGGICLPNGSATFVNSSTISNGTQSQLLYLWNFGDGQTSTMK
                     DPVHNYTGAGPFNVNLRVTSNAGCIKDTTKVLSTVYQQPKASFTVPAELCFRDSTKLS
                     DQSTAVNQAVTKYFWNFGDNSTDTVANPSKRYAAPGTFTITHFVRSDKGCYSDTVTKV
                     HVVNPLPTAAFNTSSILCEGQQMQFSDASIANAGTLTTWYWDLGDGTTLTPGNASPFV
                     HTYTNAGSKAVRLAVQSSKGCKSDTLTKAVSINVRPKANFDLPEVCLTDAFALFNNTT
                     TISDGTLASMNYLWNFGDPNATGANPNTSGLKNPQHKYTATGNYPVFLKATSNNGCVD
                     SLTQTLTVNGDKPKADFIVANTGAICSTVPVIIQNKSTVNFGNVTKVEIYWEWPSTAI
                     KTVDDQPSFDKQYQHYYTPFSSPASRVFQIRFQAFSGGICVNDIVKTITVQANPNVLF
                     TQIPGICLDASARQISQAGYQAGLPGNGVFSGTGVSSAGMFNPAVAGVGTHNITYIYT
                     SSQGCGDTAVQPITVWPRPTANFNVDAPTCVTQLVTFRDASVANFSNLKQWNWVFGDS
                     NSTTRTNNLPVTHTYNNTSTVNVQLTVVSDSGCVSTATSKDVNIHPLPVVDFSLPIVC
                     MPVGIADFTDRSTISDGSQGQFAYFWTFGVGSGSSAQKNPTFYYPAVGSYNVKLVVTS
                     KDGCKDSATKVLSDVNPQPLANFSFNPASVCLGDAYSFTAQNNPLSQTISGLFWSLGD
                     GTSNTSSTVTHTYKQAGTFNVSHYYQTTKGCYSDTVVKPVVVHPYPVVNAGPDQVVLE
                     GGQATIKATATGSSSYQYQWSPGTYLNNINVLQPITKPSQDITYKLTVIGAGGCSASD
                     DVFIKVLFAPEIPNA"
BASE COUNT          744 a          660 c          609 g          714 t
ORIGIN      
        1 atccgactgt gggcacgtat acggtgtcgc taattgtaga aactcagagt ggctgccgaa
       61 gtgttgcatt cacgaaaacg attacgattc atccttatcc ggtagctgat tttgtgctac
      121 ccggcggaat atgtctgccc aatggttcag ctacttttgt caacagttct accatttcta
      181 acggaacgca aagtcaattg ctgtacttgt ggaattttgg agatggccag acgagtacaa
      241 tgaaagaccc ggttcacaat tataccggtg caggtccttt caatgtgaac ctgagagtta
      301 cttcaaatgc cggatgtata aaagatacca ccaaggttct gagcactgtt taccagcaac
      361 ccaaggccag cttcactgta cctgctgaat tgtgtttcag agacagtaca aagttgtctg
      421 atcaaagcac tgccgtcaac caggcagtta caaagtactt ctggaatttt ggagacaatt
      481 caacggatac ggttgcaaac ccttccaagc gatatgcagc acccggaact tttaccatca
      541 cacatttcgt acgcagcgac aaaggatgct acagtgatac cgtcaccaag gtgcatgtgg
      601 tgaatccttt gccaaccgca gctttcaata cttccagtat cctttgcgaa ggacaacaaa
      661 tgcagttttc cgacgccagc attgccaatg caggtactct taccacctgg tattgggacc
      721 tgggagatgg tacgacgctg acaccgggta atgcttctcc atttgtacat acttatacta
      781 atgccggcag caaggcagtc aggttggccg tacaatcatc aaaaggttgc aagagcgata
      841 cgttgaccaa agcagtatct atcaatgtaa gaccgaaggc caatttcgat ttgcctgaag
      901 tatgccttac cgatgcattc gctttgttta acaataccac caccatcagc gatggcacat
      961 tggcatccat gaattatctc tggaactttg gagatcccaa tgccacagga gccaatccga
     1021 acaccagtgg attgaagaat ccgcagcata aatacactgc cactggcaat tacccggttt
     1081 tcttaaaggc tacatcgaac aatggttgcg tagacagcct tacgcaaaca ttgacggtga
     1141 atggagacaa accaaaagct gattttattg tggcaaatac cggcgctatt tgcagcaccg
     1201 ttcctgtcat tatccaaaac aaatcaacag taaactttgg caatgttacc aaagtggaga
     1261 tctattggga atggccttct acagctataa agacagtgga tgatcaacct tcttttgaca
     1321 agcagtacca acattattac acaccattca gttcccctgc ctccagggtt tttcaaattc
     1381 ggtttcaagc gttttctggt ggtatttgcg tgaatgatat cgtcaagacc attacagtgc
     1441 aagccaatcc taatgtgctg ttcactcaaa taccaggcat ttgcctggat gcctcagccc
     1501 ggcaaatttc ccaggctggt taccaggcag ggttgcccgg taatggtgta tttagcggaa
     1561 ccggtgtgtc gtcggcagga atgttcaatc ctgcggttgc aggggttggc acgcacaaca
     1621 ttacttacat ctatacttca tctcaaggtt gcggcgatac agcggtgcaa ccgatcacag
     1681 tttggccacg acctaccgcc aatttcaatg tggatgctcc gacctgtgtg acgcagttag
     1741 tcactttcag ggatgcatcg gtagccaact tcagcaattt gaaacagtgg aactgggtgt
     1801 tcggcgatag caattcaacc acccggacaa ataatttacc ggttactcat acatacaata
     1861 ataccagtac agtgaatgtg caactgactg ttgtgagtga tagcggatgc gtgagcaccg
     1921 caacgtccaa agatgtaaat attcacccat tacccgtggt cgacttttca ttgccgatcg
     1981 tatgcatgcc tgttggcata gctgacttca cagataggag caccatatct gatggcagcc
     2041 agggacagtt tgcttatttc tggacatttg gagtaggatc cggttcaagc gctcaaaaga
     2101 atcccacatt ctattatcca gctgttggtt cgtacaacgt gaagttggtg gtgacatcaa
     2161 aagacggatg caaagattct gcgaccaaag tgttgtcaga tgtcaatccg caaccgctgg
     2221 ccaatttctc attcaatcct gcatctgttt gccttgggga tgcctattct tttacggcgc
     2281 agaacaatcc actttctcaa accatctcag gcctgttctg gtctttgggt gatggcacca
     2341 gcaatacttc atccactgta acacatacct acaagcaagc cggaacattc aatgtctcac
     2401 attactacca aactacaaaa ggatgctatt ctgatacagt ggtaaaaccg gttgtggtgc
     2461 atccttatcc ggtagtgaat gccggccctg accaggtagt gttggaggga gggcaggcaa
     2521 ccatcaaagc caccgccacc ggaagttcca gctatcaata tcagtggtct ccaggtactt
     2581 atctaaacaa tatcaatgtg ttgcagccga taaccaagcc ttcgcaggat attacctaca
     2641 agcttactgt aattggtgca ggtggttgta gtgcatcgga cgatgtcttc attaaagtgc
     2701 tttttgcacc tgaaattccc aatgcct
//
LOCUS       DATIQF010000817         2575 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_119586,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000817 DATIQF010000000
VERSION     DATIQF010000817.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2575
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119586"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1049
                     /locus_tag="VLL95_14045"
     CDS             <1..1049
                     /locus_tag="VLL95_14045"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HSR40031.1"
                     /translation="SSAPDKQAVFEALTSLYHETVARPGTAKGTLLEIDPSAHRVFLL
                     SDHHKGSRNGADDFGVCEPCYLAALDHYHQEGWIYINLGDSEELWENNILGVLKHNKQ
                     TFASEKRFIDRNAYFKIYGNHDSLFRFDPLAPGYLRQMYGQPVKVHGAILLRAVLQAG
                     KHLDILCTHGHQGDSKSDGNWFSAWFVATIWGPLQSFLRINPNTPSTSNEKKSLHNQY
                     MYEWSARQENTLLITGHTHQPVFASLTHLERLYMQLEAAMENGDTVSIPRIKAELDYR
                     EKQYPFVNMHFKQLKPTYFNTGCCCFNNGNITGIEISDNMIRLVKWTMEKGYAERIVL
                     EESTLNALLLTLEK"
     gene            complement(1051..2115)
                     /locus_tag="VLL95_14050"
     CDS             complement(1051..2115)
                     /locus_tag="VLL95_14050"
                     /inference="COORDINATES: protein motif:HMM:NF033668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PA0069 family radical SAM protein"
                     /protein_id="HSR40032.1"
                     /translation="MSSSAAGRPSRGAGINTPNRFLRQQRSKSIIEGIDDWEEPSPGT
                     IFLQEHAKTLVNKVTSPDVGMYYSMNPYQGCEHGCAYCYARNAHEYWGLSAGIDFEQK
                     IIVKENAPQLLRQFLMHPSWQSVPLSLSGNTDCYQPAEQKFRITRQLLEVCWSFRQPV
                     SIITKNAFVIKDADILQTMAAHHLTAVLVTITTQQEDLRRAMEPRTTTISQRLRVIEV
                     LSKLGVPCGVMMGPVIPGLNDHEMAGILQSAADAGARFAAYTFVRLNGSVQLIFHEWL
                     HKHFPDRAEKVWHMIEQGHGGKVNDSRFGTRMRGEGPMAQLIHQQFKKYCRRFGLNKE
                     PVQLDCSQFTRPGQQLALFK"
     gene            complement(2129..>2575)
                     /locus_tag="VLL95_14055"
     CDS             complement(2129..>2575)
                     /locus_tag="VLL95_14055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40033.1"
                     /translation="AFKQYDGFEEKLVRRLQNAAAGLSPFKLSLYNVVSEPTHRVALE
                     VPLHFHMQELIKEIRRHQWIMRIPMQQPFVTTHPSIILAHTLTPSQYNSMWPRLQQRH
                     FTASFIVDDLLLLRRRRGEKAWQILERLPLQNMPVLASQGVLFQFA"
BASE COUNT          652 a          681 c          630 g          612 t
ORIGIN      
        1 tttcttcagc gcccgataag caagctgttt ttgaagccct cacttcttta tatcacgaaa
       61 cagtggcccg gcccggaaca gccaaaggaa ccctgttgga aatagaccct tctgcgcatc
      121 gtgtgttctt gctcagcgat catcacaagg gtagcaggaa cggggctgat gattttggag
      181 tttgtgaacc ttgttacctc gcggcattgg accattacca ccaggaaggc tggatttaca
      241 tcaacctggg cgacagcgaa gagctttggg agaacaacat cctgggcgtg ctgaaacaca
      301 acaaacaaac atttgccagc gagaagcggt tcattgaccg gaatgcctac ttcaaaattt
      361 atggcaacca tgattctctt ttccgatttg atcccctggc gcctggctat ttacgacaga
      421 tgtatggcca acccgtcaaa gtgcacggcg ccattctcct gcgggctgta ttgcaagctg
      481 gcaaacacct tgacatcctt tgcacccatg gccaccaggg cgacagcaag agcgatggaa
      541 actggttcag tgcatggttt gtagccacca tttggggacc gctgcaaagc tttttgcgca
      601 tcaacccgaa cacgccttcc accagcaatg aaaagaaatc gctgcacaac cagtatatgt
      661 atgagtggag tgccaggcaa gaaaacacgc tgctcatcac cgggcatact caccaacctg
      721 ttttcgcttc tctcacccat ttggaacgac tatacatgca attggaagct gccatggaaa
      781 atggtgatac cgtctccatt ccccgcatca aagcggaact ggattaccgt gaaaaacaat
      841 acccttttgt aaacatgcat ttcaagcagc taaagcccac ctatttcaat acgggatgct
      901 gctgcttcaa caacgggaac ataaccggaa tagaaatatc cgacaacatg atccggctgg
      961 taaaatggac catggaaaaa ggatatgcag aaagaatagt attggaagaa tccacgctga
     1021 atgccctgct cctaaccttg gagaagtaac tcatttgaat agcgccagct gctgcccagg
     1081 ccttgtaaac tgcgagcaat cgagctgtac aggctcctta ttcaggccaa acctgcggca
     1141 gtattttttg aactgttgat ggatgagttg ggccatcggt ccttcgccac gcattctcgt
     1201 tccaaagcgg ctgtcattca ctttgccacc atgcccctgt tctatcatgt gccacacttt
     1261 ttcggcccgg tctggaaaat gcttgtgcag ccattcatga aaaatgagtt gaacagagcc
     1321 gttgagcctc acaaaagtgt aggcggcaaa gcgggcaccg gcatcggcgg ccgactgaag
     1381 aatgcctgcc atttcatgat cattcaatcc gggaattacg ggacccatca tcacgccgca
     1441 tggcaccccc aacttgctca gcacttctat cacccgcaac cgctgactga tggtggtagt
     1501 gcgtggctcc atcgcccttc gcagatcttc ctgttgcgta gtgatggtaa ccaacacggc
     1561 agtcaaatgg tgcgcagcca tggtttgaag gatgtccgca tccttgatga caaaagcatt
     1621 cttggtgatg atgctgaccg gctgcctgaa tgaccagcac acttcgagca actggcgggt
     1681 gatcctgaat ttttgctcgg cgggttgata acaatcggtg ttgccgctga gcgatagtgg
     1741 cacactctgc caggaaggat gcatcaaaaa ctgccgcaac aattgcggcg cattttcctt
     1801 cacaatgatc ttttgttcaa aatcgatgcc ggcactcagc ccccagtatt catgcgcatt
     1861 gcgggcatag caataggcgc agccatgctc acagccctga taaggattca tgctgtagta
     1921 catgcctaca tcaggactgg tcactttgtt caccagcgtt ttggcatgtt cctgcaggaa
     1981 aatggtgccg ggcgaaggct cttcccaatc atcaattcct tctatgatgc tcttgcttcg
     2041 ctgctggcga agaaaacggt tgggcgtatt gatgccagcg cccctcgagg gccggcctgc
     2101 agcggaagat gacatgaagt agctttctct aagcgaattg aaacaatacc ccctggctgg
     2161 ccagcaccgg catgttttgc aatggaagcc gttccagtat ttgccatgcc ttctctcccc
     2221 ttcggcggcg cagcaacaac aaatcatcta caatgaatga ggcagtgaaa tgccgttgct
     2281 gcagccgggg ccacatgctg ttgtattgcg aaggggtaag ggtgtgcgcc agtatgatgg
     2341 atggatgagt agtgacaaaa ggctgttgca tgggaatgcg catgatccat tgatgccgcc
     2401 ttatctcctt tatcaattcc tgcatgtgaa aatgaagggg cacttccaat gctacacggt
     2461 gagtgggctc actcaccaca ttatacagcg acaatttaaa cggcgacaac cctgcggccg
     2521 cattctgcaa gcgacgaacc agcttttctt caaaaccgtc atactgtttg aaggc
//
LOCUS       DATIQF010000818         3053 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_164908,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000818 DATIQF010000000
VERSION     DATIQF010000818.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3053
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164908"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..215
                     /locus_tag="VLL95_14060"
     CDS             <1..215
                     /locus_tag="VLL95_14060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40034.1"
                     /translation="TDVLEKGTWLFAGIIGLLCVVSVLFMGGSSQSKSAIDRVKTSGV
                     PAQTQQPAPANQGGNATQPAKADSGK"
     gene            312..1352
                     /gene="mltG"
                     /locus_tag="VLL95_14065"
     CDS             312..1352
                     /gene="mltG"
                     /locus_tag="VLL95_14065"
                     /inference="COORDINATES: protein motif:HMM:TIGR00247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HSR40035.1"
                     /translation="MKKLLRLVLLAVALLLVLAAWLLLGSATAFDEKQKYLYIHTTNP
                     TKEKVQEALLEQNILKGTSVFNLLAGWTGYYDHIKPGKYKVEKGTSVIRLLRLLQKGR
                     QEEVRMVIGKVRLPEEMAQRMARYIETDSAAALAFLTNDDSLASMGVNQANWMTAMLP
                     NTYNIYWTYPVGQVMRKLKQESDKWWSKEQRKEKAAKLGYTPQQIFTIASIVEEETNM
                     TKDKPLIASVYLNRLKKGMPLQADPTVRFARKDFESNRVTYEHLRTPSPYNTYLNKGL
                     PPGPICIPSLVSIDAVLNAPATDYLYFVAKPDFSGYSVFTANFNEHKIAAKRYQDSLN
                     AYLARKAAQSSR"
     gene            1357..2322
                     /locus_tag="VLL95_14070"
     CDS             1357..2322
                     /locus_tag="VLL95_14070"
                     /inference="COORDINATES: protein motif:HMM:NF015587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HSR40036.1"
                     /translation="MTHFEKKILSIPLVASVLRLTKRISLPGLDGIPVYDILDFFFKQ
                     ARKIGFSERAAAISFNIIMALPGLMLFLITLVPLMPDSVAFKDQLLVTLNDIVRHPQL
                     HSMIADVINDLFTTKRSGIMWLSVIIIIFFSSNAMMGIMHTFDRSFFEERSSRFMAKR
                     WMALKLTALLILLILTSLLLLITQGSIKTFILDKLGWNFGWLKSVIDYSRWIVIFGLT
                     YFAIAFIYRYGPAVKVKWSLRSPGAVFATILVILVSYLFSLWVTSFSNYNKLYGSIGT
                     IIIFMNIIYINSLILIIGFEVNVGITAIKVKSQKRMADEDLSISD"
     gene            2417..3022
                     /locus_tag="VLL95_14075"
     CDS             2417..3022
                     /locus_tag="VLL95_14075"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HSR40037.1"
                     /translation="MKRLMLAFSAALLLLAFAPIEELAIGSKLPKADVKMTDISGKEI
                     TLGNTITKNGLLVMFSCNTCPYVIKNQERTRQILAYAQSKKMGVAVLNSNEAYRGKED
                     SYDAMKAYAKDQQYNWIYAIDKNHVLADAFGATRTPECFLFDGNGVLVYHGAIDDSPT
                     DAAAVKRMHLKEAIDEMTGGKQVTVTTSRSIGCGIKRLSNP"
BASE COUNT          813 a          788 c          705 g          747 t
ORIGIN      
        1 ccactgacgt attggaaaaa ggtacctggt tgttcgctgg tatcattggt ttgctttgcg
       61 tggtaagcgt attgttcatg ggtggcagca gccaatctaa aagcgccatc gaccgcgtaa
      121 aaaccagcgg agtgcctgca caaacccagc aaccggcccc ggccaaccag ggcggcaacg
      181 ctacccagcc agccaaggct gacagcggca aataattgca acagtcacta ttctgcgaaa
      241 aatattgatc ctgccttgtc ggcaggattt tttattgcaa attgccatac caccttttct
      301 ctctcattgt catgaagaaa ttgctccgac ttgttttgct ggcagttgcc ttgctccttg
      361 tcctggcggc ctggctgctg ctgggcagtg ctacggcttt tgatgaaaag cagaagtacc
      421 tgtacatcca cacgaccaac cccaccaaag aaaaagtgca ggaagcgctg ctggaacaaa
      481 atatcctgaa aggcacatcg gttttcaatt tgctggccgg ttggacaggg tactacgacc
      541 acataaaacc cggtaaatac aaagttgaaa aaggcaccag tgtcatcagg ttgctgcgct
      601 tactgcaaaa aggacggcag gaagaagtgc gcatggtgat aggcaaagtg cggctgccgg
      661 aagaaatggc gcaacggatg gcccgttata ttgaaactga ctctgcagca gcactggcct
      721 tcctgaccaa cgatgacagt cttgcctcaa tgggcgtcaa ccaggcaaac tggatgactg
      781 ccatgctgcc caacacctac aacatttatt ggacctaccc tgtgggacag gtgatgcgca
      841 aattgaagca agagtcggat aaatggtgga gcaaagagca acggaaagaa aaagcggcca
      901 aactgggata taccccccag cagatcttca ccattgccag catagtggaa gaagaaacca
      961 acatgaccaa ggacaagcct ttgattgcaa gtgtgtatct caaccgcctg aaaaaaggga
     1021 tgcccttgca agccgatccc accgtaaggt ttgcccgcaa agactttgaa agcaaccggg
     1081 taacttacga gcatttgcgt accccctctc cgtacaatac ctatctcaac aagggattgc
     1141 cgcccggccc catttgcata ccctccctgg taagcatcga tgccgtactc aatgcgcctg
     1201 ccaccgacta tttatatttc gtggccaagc ccgacttctc cggctattct gtttttaccg
     1261 ctaattttaa cgaacataag atagccgcca aaagatacca ggacagcctg aatgcatacc
     1321 tggcacgcaa agcagcacaa tcttcccgat gaccgaatga cccattttga aaagaagata
     1381 ctttccattc cgctggtagc ctctgtcctg cgactcacca agcgcatatc ccttccaggg
     1441 cttgacggca ttccggttta tgacatactc gatttctttt tcaaacaagc ccgcaaaatt
     1501 ggcttcagtg aaagagcggc ggctatttct ttcaacatca tcatggccct gcctggcttg
     1561 atgcttttcc tgatcacact ggtgccttta atgccggata gcgtcgcttt taaagatcag
     1621 ctattggtga cgctgaacga tattgtaagg catccacagc tgcattcaat gattgctgat
     1681 gtgataaacg atttgtttac caccaagcgt agcggcatca tgtggctgag tgtcatcatc
     1741 atcatcttct tcagcagcaa tgccatgatg ggcatcatgc acacttttga ccgtagcttt
     1801 ttcgaggaac gcagcagccg cttcatggcc aagcgctgga tggccctcaa actgactgca
     1861 ttgctgatcc tgctcattct cacctcgcta ttgctgctga ttacacaggg cagcatcaag
     1921 acctttatcc ttgacaaact gggctggaat tttggctggc tcaaatcggt gatagactac
     1981 agccggtgga tcgtaatatt cgggctcacc tatttcgcca ttgccttcat ttaccggtac
     2041 ggccccgccg tgaaagtaaa atggagcctc cgctcccccg gcgccgtgtt tgccaccata
     2101 ctggtgatac tggtatccta cctgttttca ctatgggtga ccagcttttc caattacaac
     2161 aagttgtatg gatccattgg taccatcatc attttcatga acatcatcta tatcaattcg
     2221 ctcattctca tcatcggttt tgaagtgaat gtgggcatta ctgccatcaa ggtcaaaagc
     2281 cagaagcgca tggccgacga ggacctttct atttcggatt gattgcctgc ccgttcatcc
     2341 cattggaagt ttaacgctct tcttaccaac ccggctgcgt cttgtttgta tcttgatcct
     2401 gcaaaaccag acgactatga aacgacttat gcttgctttt tcagcagcct tattgctgct
     2461 ggcttttgcc cccattgaag aactggccat tggcagcaaa cttcccaagg ctgatgtgaa
     2521 aatgactgat atcagcggca aggaaattac cctgggaaat accatcacaa agaatggttt
     2581 gttggtgatg ttcagttgca acacttgtcc gtatgtcatc aaaaaccagg agcgtacccg
     2641 ccagatactg gcttatgcac aatcgaaaaa aatgggagtg gctgtactca acagcaacga
     2701 agcctaccgt ggaaaagaag acagctatga tgccatgaaa gcgtatgcca aagaccagca
     2761 gtacaactgg atctatgcca tcgacaaaaa ccatgtgttg gccgatgcat ttggcgccac
     2821 ccgtacaccg gaatgtttct tatttgatgg caatggcgta ttggtatacc atggcgctat
     2881 tgacgacagt cccaccgatg ctgcggcggt aaaaagaatg cacctcaaag aagcgattga
     2941 tgaaatgacg ggagggaaac aggtaactgt tacaacatcc cgctccatcg ggtgcggaat
     3001 caaaaggttg agcaatccct aatgttgtta gcaagtaatt tgcagaagcg atc
//
LOCUS       DATIQF010000819         1602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_28249, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000819 DATIQF010000000
VERSION     DATIQF010000819.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28249"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..579
                     /locus_tag="VLL95_14080"
     CDS             <1..579
                     /locus_tag="VLL95_14080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40038.1"
                     /translation="MIAEVAGRPNLMAGRTSMTLTKDMKGLGVDVFPNIQNTSYTITS
                     EIEAGPGVNGVMVCQGGRFGGFSFYIKNGKPAFTYNLFGLKSTTITASNPLPPGKHTI
                     VFDFKYDGGGLGRGGIGTIMIDGQKAGEGRIERTQPGVFGVVDLADVSADLGTPVADY
                     GPSSRFTGEIKRVTVQRNAENAKGGTPPPMID"
     gene            772..1134
                     /locus_tag="VLL95_14085"
     CDS             772..1134
                     /locus_tag="VLL95_14085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40039.1"
                     /translation="MLICGLLTCTMLQGLFSPAAFLQANFGEELVSGIENLVVRGWSA
                     LIGMMGIMLIYGAFNTTVRNLTLLMAGTSKVLFIALGFAFGRQYMGFGLKTAMIVDSI
                     MILLFALYLMFSRKADVR"
     gene            1155..>1602
                     /locus_tag="VLL95_14090"
     CDS             1155..>1602
                     /locus_tag="VLL95_14090"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF012678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HSR40040.1"
                     /translation="MEKLVKRSYYRLYQNIFKLAMPLLPWRKPELLEGKGSIKRVPEI
                     LEKLHIQNVLIVTDAMLMKLGLLDGLLKALDDKGCKYAIYDKTVPDPTIENVEEALQL
                     YHQHQCKGIIAFGGGSPMDCAKIVGARVSRPNKPIEKMKGVLKVVSK"
BASE COUNT          481 a          337 c          385 g          399 t
ORIGIN      
        1 atgatagcgg aggttgcagg caggcctaat ttgatggctg gaagaacttc aatgacgctg
       61 accaaggaca tgaaaggact aggcgtggat gtatttccca atattcaaaa tacatcctat
      121 accattacat cggaaattga agcaggacca ggcgttaacg gcgtgatggt ttgccagggt
      181 ggtcgtttcg gaggattttc tttctacata aagaatggca aaccagcctt tacctataac
      241 ttattcggcc tgaaatcaac aaccattacg gcatccaatc ctttaccacc gggaaaacac
      301 acaattgtat ttgatttcaa atatgatgga ggtggtctgg gccgcggtgg tataggcaca
      361 attatgatag atggacaaaa agcaggagaa gggcgtattg aacgaaccca accaggcgtc
      421 ttcggagtgg ttgacctggc agacgtgagt gcggatctgg gaacacccgt tgcagactat
      481 ggcccttcaa gcaggttcac cggcgaaata aaaagggtaa cggtacaacg aaatgcagaa
      541 aatgccaaag gcggcacacc gccacctatg atagattgat aaaacagcct cttgaaatat
      601 attcaagagg cgctttatcg gcctacgtgt aagcaggaag aatttcggta agcattcaat
      661 tgtattgttc tattgaaatt cttcctgtct tataagattg caggaaacat accctaccat
      721 tagttgtaac caatagccat gcgtgtcttt acagcaaact ttaagtgggt catgctcatc
      781 tgcggactgt tgacttgcac catgctacaa ggactgtttt caccagccgc ttttctgcag
      841 gcaaactttg gagaagaact ggtaagcgga attgagaacc ttgtcgtaag aggctggtct
      901 gcccttatcg gcatgatggg catcatgctg atctatggag cattcaatac taccgtaagg
      961 aatcttaccc tgttgatggc aggaacaagt aaagtcctct ttattgcgct tggcttcgcc
     1021 tttggcaggc aatacatggg atttggttta aaaacggcta tgatcgtcga ttcgatcatg
     1081 atcctgttgt ttgccttgta cctcatgttt tcaaggaaag ctgatgtccg atagattcaa
     1141 ataaaaaacc gcacatggaa aagctagtca aaaggtccta ctacaggctc taccagaaca
     1201 tattcaaact cgccatgcca ttgcttccat ggcgtaaacc tgaattattg gaaggcaagg
     1261 gaagcatcaa gcgggtaccg gaaatcctgg aaaagctcca tatccagaac gtactgattg
     1321 taacagacgc tatgttgatg aagcttggat tattggatgg attgctaaaa gcactcgacg
     1381 acaagggatg caaatacgct atttatgaca aaaccgttcc ggatccaacc atcgaaaatg
     1441 ttgaagaagc cttgcaactg taccatcagc accaatgcaa aggtatcatc gcatttggcg
     1501 gcggatcacc catggattgc gctaaaatcg taggtgccag ggtaagcagg ccgaacaaac
     1561 cgatcgagaa aatgaagggt gttttgaaag tggtatcaaa aa
//
LOCUS       DATIQF010000820         2022 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_164925,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000820 DATIQF010000000
VERSION     DATIQF010000820.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164925"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..325
                     /locus_tag="VLL95_14095"
     CDS             <1..325
                     /locus_tag="VLL95_14095"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSR40041.1"
                     /translation="ASFPGASMEFHITEQYRNMKEVLDKHPEVVQYAKEAIERAGLKV
                     KTEAIRGGTDGSRLSFMGLPCPNIFTGMQNLHGKHEWISVQDMHKAVDTLVHLVQVWE
                     EKTAG"
     gene            complement(340..867)
                     /locus_tag="VLL95_14100"
     CDS             complement(340..867)
                     /locus_tag="VLL95_14100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40042.1"
                     /translation="MENRADVFESWRELVPEDFADDSRVWIYQCNRMLRLQEALQVES
                     LIEDFVSDWKSHGAPVKGYANLFFGQFLVIMADENATGVSGCSTDSSVRMVKEIEKLF
                     GVNMFDRMNMAFLVKGKVEMLPLQQLQYAIDKNFITPDTIYFNNLAQTKKDWLEKWMV
                     PVKYSWLSSRYMPTA"
     gene            complement(955..1272)
                     /gene="trxA"
                     /locus_tag="VLL95_14105"
     CDS             complement(955..1272)
                     /gene="trxA"
                     /locus_tag="VLL95_14105"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HSR40043.1"
                     /translation="MALEFTDAGFKAEVLESDKLTVVDFWAEWCGPCRAIGPIIEDLS
                     KEYSGKVNVGKLNVDHNPEVSINYGITSIPAILFFKNGQMVDKLVGAQPKANFVKKIE
                     QHM"
     gene            1519..>2022
                     /locus_tag="VLL95_14110"
     CDS             1519..>2022
                     /locus_tag="VLL95_14110"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR40044.1"
                     /translation="MLQKPLLLFILLSVSLISSASDTCWLLKPSRVFDGEGLRNGWVV
                     AVLGNSIIYAGEETGFEKSKPAGITIVAVALANKTVLPGLIEGHSHILLHPYDEVPWK
                     TQVLEESRAERVARAVNHLDATLRAGFTTIRDLGTEGAAFDDVGIKSAIEKGIIQGPR
                     MLVATEAI"
BASE COUNT          507 a          493 c          494 g          528 t
ORIGIN      
        1 ggcatcattt cccggcgcca gcatggaatt tcatattact gaacaatacc gcaacatgaa
       61 ggaggtgctt gacaagcatc ctgaagtggt acaatatgca aaggaagcca ttgagcgggc
      121 cgggctgaaa gtgaaaacag aagccatcag gggtggtaca gatgggagcc ggctcagttt
      181 catggggcta ccctgtccca acatttttac cggcatgcaa aatcttcatg gaaagcatga
      241 atggatcagc gtgcaggaca tgcacaaagc cgtggacacg ctggtgcacc tggtgcaggt
      301 atgggaagaa aaaacagccg gttgacgccg gctgtttttt tatgcggttg gcatgtatcg
      361 ggaggagagc caactgtatt tcaccggcac catccatttt tccaaccagt ccttttttgt
      421 ttgtgccagg ttgttgaaat aaatggtatc gggcgtaatg aaattcttat caatggcgta
      481 ctgcaattgt tgcagcggca acatctccac tttgcctttc accaggaagg ccatgttcat
      541 ccggtcgaac atgttcactc caaaaagttt ctcaatctct ttcaccatcc gaactgaact
      601 gtcggtgctg cagccgctta cgcccgttgc gttttcatcg gccatgatca ccaggaactg
      661 gccaaagaag aggttggcat aacctttcac gggtgcgcca tggcttttcc aatcagacac
      721 gaaatcttcg ataaggcttt ccacctgcag cgcttcctgc aggcgcagca tgcggttgca
      781 ctggtagatc cacacccggc tatcgtcggc aaagtcttcc ggcactaatt cccgccagga
      841 ttcaaaaaca tcagctctgt tttccataga tgcaaaaata aaagaaacct gcaggccatg
      901 ttcgggctgc aggtttgtat actcaatgaa tggatagccc ttcccgggaa tcaattacat
      961 gtgttgctca atcttcttta caaagttggc cttgggttga gcgcccacca gtttgtctac
     1021 catttgcccg tttttgaaaa acaggatggc aggaatagag gtaatgccat agttgatgct
     1081 cacttcagga ttgtggtcca cgttcagttt gcccacattc accttgcctg aatattcctt
     1141 gctcaggtct tcgatgatgg gtcctattgc acggcaaggg ccgcaccatt ctgcccaaaa
     1201 gtcaactacg gtcagtttat cactttcgag cacttcggct ttaaaaccgg cgtctgtaaa
     1261 ttctagtgcc attttgcgtt attttttgtt agaaacggtt tggaaatgga aagggttcaa
     1321 aaataaagcc atttgaattt ggctgccatt tggcttatcc accactgttg cacatagacg
     1381 aatggtcagg tacaactgcc attggggcag gtttttgcta acaaaacgca aaggccgggc
     1441 accaaatgga gaaaaacgat tttgtcgcct tattcccctg tattactttt tgtcgccaat
     1501 taaaattcat ccttccacat gttacaaaag cctttactgc tgtttatcct gttgtctgtc
     1561 agcctcatct cttctgcttc cgatacctgc tggctcctga agccatcgcg ggttttcgac
     1621 ggagaggggt tgcgaaacgg ttgggtagtg gccgtgctgg gcaacagtat catttatgct
     1681 ggtgaagaaa caggttttga aaaaagcaaa ccggcaggga taaccatagt ggctgtggca
     1741 ttggccaaca aaacagtttt acccggcctc attgaaggcc attcacacat tttgcttcat
     1801 ccttacgacg aagtgccctg gaaaacccag gttctggaag aatcgagagc agaacgggtg
     1861 gccagggccg tcaatcacct ggatgccact ttgagagcgg gcttcaccac catccgcgac
     1921 ctgggtaccg aaggagcggc atttgatgat gttggcatca aatcggctat cgaaaagggc
     1981 atcattcaag gcccccgaat gctggttgcc accgaggcta tt
//
LOCUS       DATIQF010000821         4077 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_119637,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000821 DATIQF010000000
VERSION     DATIQF010000821.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4077
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119637"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..514)
                     /locus_tag="VLL95_14115"
     CDS             complement(<1..514)
                     /locus_tag="VLL95_14115"
                     /inference="COORDINATES: protein motif:HMM:NF013885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40045.1"
                     /translation="MQKKLSFLDRYLTLWIFAAMALGVGIGYFFPGTEAFINQFQSGS
                     TNIPIAIGLILMMYPPLAKVKYEELPSVFQNKKILGLSLVQNWLVGPLLMFALAILFL
                     RDQPEYMTGLILIGIARCIAMVIVWNDLAGGDRIYAAGLVAFNSIFQVLFYSVYAWLF
                     ITKLPPLFGLK"
     gene            complement(562..1407)
                     /locus_tag="VLL95_14120"
     CDS             complement(562..1407)
                     /locus_tag="VLL95_14120"
                     /inference="COORDINATES: protein motif:HMM:NF008823.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite methyltransferase"
                     /protein_id="HSR40046.1"
                     /translation="MATDHELKELVKEKYSQIALQDKEYNAASCCGATSCCGGDEVYN
                     IMADDYTQLEGYNADADLGLGCGIPTAFAKMKTGDTVVDLGSGAGNDAFVARKVVGET
                     GKVIGVDFSEAMLEKARANADKLNLNNVEFRLGDIEQLPITANKADVVLSNCVLNLVP
                     NKAAVFAEIMRVLKPGGHFSISDIVLKGELPGKWKEVAELYAGCVSGAIQKDEYLGII
                     QKTGFTNITLQKEKPIIIPDELLKEYLNEEEIATYKNGDIQIISVTVYAEKPAACCEP
                     GSGCC"
     gene            complement(1438..1770)
                     /locus_tag="VLL95_14125"
     CDS             complement(1438..1770)
                     /locus_tag="VLL95_14125"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HSR40047.1"
                     /translation="MAIAKTEAFSKKEQEMAAFAKALAHPARVAILKVLASRNECVCG
                     QIVDVLPLAQSTVSQHLKELKEAGLIKGTVEGPRSCYCINWQAFEKFKNEFNSLFDTL
                     KSKQSKCC"
     gene            1961..3937
                     /locus_tag="VLL95_14130"
     CDS             1961..3937
                     /locus_tag="VLL95_14130"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HSR40048.1"
                     /translation="MKPLFKILCAMTLLLVSLAGMAQKSNWEKNFPGGINFYSVSDAG
                     IFIVGTNDALYGINPEDGKEIWKLPEFKKITEEAFNPIPFSPLAAIVDRGMMVQHAVI
                     NTVTGQVVCNTKDLGFSTVNKRFANAKLGAVLFSGMNKKGKACLMLVDAATGEKRFEV
                     ERVFDKNTEVICSEVYAINKDLFLISTTKAIYCIDARTGEEKWRSEMKTDPPVVQPDA
                     KDSKNPFAAFGKGMNKIQAKMAVAVSSKFFQVTDPSRVYFFNNDYFTCYDWATGKEVW
                     QRQELSSPLNNYILDDRGIIVTTNQRGENYGKQGGLMGKALGGGNKAKMYMFDYATGK
                     QLLQDEIDVAGNVIGYNYDNTGKRIVIATANDKGSNKIDIIDVAAGKEAIRKPLRVSG
                     NIRDIKLVSKGLLYITDEEINIMDLETGGDAWGKSIKVKDYVVHGFKDENTMYMAVDG
                     DLIKFDVATSTPTKIGSVSLDGKESPSGMQFVNGGLVLSSSQNIRYFDLTGKEGWKVY
                     RPAPGVSLAGKIALGVVAAASVAMMAANSYQAGYAAAGGATYKGQYMSNQSAADSYAR
                     DADNWGAIAVASFQAMNKRFKATRTTATMQSILTKTDDGKDEGVGIEIYNKETGSKEG
                     AVVLRDKKPEYFFDDIGRIVFWKRNDNSFTGVFF"
BASE COUNT         1036 a          993 c         1057 g          991 t
ORIGIN      
        1 ctttcagtcc aaacaagggc ggcagcttgg tgatgaacaa ccaggcatat acactgtaga
       61 acagcacctg gaaaatggag ttgaaagcca ccaatccggc ggcgtatatg cggtcgccac
      121 cggcgaggtc gttccacaca atgaccatgg ctatgcatcg ggcaatgcca atgaggataa
      181 gcccagtcat gtattcaggc tggtctcgca aaaacaggat ggccagcgca aacatgagca
      241 acgggcccac cagccagttc tgcaccagcg aaaggcccag gatttttttg ttctgaaaca
      301 ctgatgggag ctcttcatac ttcacctttg ccagcggtgg atacatcatc agtatcaaac
      361 cgatggcgat gggtatgttg gtagagcccg actggaattg gttgatgaat gcctcggtgc
      421 cggggaagaa gtacccgata cccaccccca gagccatggc ggcaaaaatc cacagggtaa
      481 ggtatcggtc gaggaaggat agttttttct gcataaggaa gcgtaataaa gttagaatgg
      541 gttgaatgca ggcagcgacg atcagcagca gccactgccc ggttcgcagc aggcagcggg
      601 cttttccgcg tacactgtta cacttatgat ctggatgtca ccattcttgt aggtggctat
      661 ctcttcctca ttcaaatatt ccttcagcaa ctcatcagga atgatgatgg gcttttcttt
      721 ctgcagggtg atattggtaa agcctgtttt ttgaatgatg ccgaggtatt catctttctg
      781 gatggcgccg cttacgcagc cggcatacaa ctccgcaact tctttccatt ttccgggcag
      841 ctcacctttc aacacaatat cgctgatgga gaaatgtccg cccggcttca gcacccgcat
      901 gatctctgca aacacagcgg ccttgttagg caccaggttg agtacgcagt tgcttagtac
      961 tacatcggcc ttgttggcgg taatgggcag ttgctcaata tcgcccagcc tgaattccac
     1021 gttgttcaga ttcagtttgt cggcattggc cctggccttt tcgagcatgg cttcgctgaa
     1081 atccacgccg attaccttcc cggtttcgcc taccactttg cgggctacaa aagcgtcgtt
     1141 gccggcgccg ctgcccaggt ccactaccgt atcgcctgtt ttcattttgg cgaatgcagt
     1201 gggtatgcca cagcccaggc caaggtcggc atcggcattg tagccttcca gctgggtgta
     1261 gtcgtcggcc atgatattgt atacctcatc gccaccgcag catgaagtgg caccgcaaca
     1321 actggcggca ttgtattcct tgtcctgcag ggctatttgg gagtatttct cctttaccaa
     1381 ttcttttaat tcgtggtcag ttgccataat gattgttttt aaatgttatg agattggtca
     1441 gcagcatttg ctctgctttg atttcagggt gtcgaacaat gaattgaatt cattcttgaa
     1501 tttttcaaaa gcctgccagt tgatacagta gcagctcctg gggccttcca cggttccttt
     1561 gatgaggcct gcctccttta attctttcag gtgctggctt acggtgcttt gcgccagtgg
     1621 caacacatct acgatctggc cacacacaca ttcgttgcga ctggccagta ctttcaggat
     1681 ggccaccctg gcggggtgtg ccagcgcttt ggcaaatgct gccatttcct gttctttctt
     1741 gctgaaggct tctgtttttg ctattgccat aatcgtattg gtacgatgaa tttggtgaaa
     1801 agaaaagcgg gtgaaccgct gtaatttatc gtaaaagtac gatgaatatt tttgctgcca
     1861 aatttttttt cctattcccg accccgggaa gcgaaatacc cactgtcggg tattgataaa
     1921 gagggtgaca ggcaacacat ttgagcaaaa cttaaccctc atgaaaccct tattcaagat
     1981 cctgtgtgcc atgacccttt tgctggtgtc tttggctggg atggcgcaaa agtcgaactg
     2041 ggagaagaac tttccaggtg gtatcaactt ctacagcgtc agcgatgccg gcatttttat
     2101 tgtaggcacc aacgatgcat tgtacggcat caaccctgag gatggcaagg aaatctggaa
     2161 acttccggag ttcaagaaga taacggaaga agccttcaat cccattcctt tcagtccact
     2221 ggccgccatt gtcgacaggg gcatgatggt gcagcatgcc gtcatcaata ccgttaccgg
     2281 gcaggtggtg tgcaatacga aagacctggg attttcaacg gtcaacaagc ggtttgccaa
     2341 tgccaagctg ggcgctgttc ttttcagcgg catgaacaag aaagggaagg cctgcctgat
     2401 gctggtggat gcggccaccg gcgaaaagcg ctttgaggta gaacgggtgt tcgataaaaa
     2461 caccgaggtg atctgcagcg aggtgtatgc catcaataag gacctctttt taatatccac
     2521 caccaaagcc atttattgca ttgatgcccg aacaggcgaa gaaaaatggc gttctgaaat
     2581 gaagacggat cctcctgtgg tgcagcccga tgccaaagac agcaaaaatc cctttgccgc
     2641 atttggaaaa ggaatgaata agatccaggc caaaatggcg gtggctgttt catccaagtt
     2701 cttccaggtg actgatcctt ccagggtgta tttcttcaac aacgattatt tcacctgtta
     2761 cgactgggct accggcaaag aagtttggca gcggcaggaa ctgagcagcc cgctcaacaa
     2821 ctacatcctc gacgaccgcg gtatcatagt caccaccaac cagcgcggtg agaattacgg
     2881 aaagcaaggc ggactgatgg gtaaggcttt gggcggaggc aacaaagcca aaatgtacat
     2941 gtttgactat gccactggca agcaactatt gcaggatgaa atagatgtgg caggcaatgt
     3001 gatcgggtac aattacgaca acaccggcaa gcgcattgta attgccactg ccaacgacaa
     3061 aggcagcaac aagatcgaca tcattgatgt ggcggccggt aaggaagcca tcaggaagcc
     3121 gctcagggtt tcaggcaaca ttcgcgacat caaactggtg agcaagggcc tgttgtacat
     3181 caccgatgaa gagatcaaca tcatggacct ggaaacaggc ggcgatgcct ggggcaaaag
     3241 cattaaagta aaggattacg tggtgcacgg cttcaaggat gaaaacacca tgtacatggc
     3301 agtggatggc gacctcatta agtttgatgt agccaccagc acacccacaa aaattggcag
     3361 tgtttcactg gatggaaaag aaagcccatc gggaatgcag tttgtaaatg gtggtctcgt
     3421 gctgtccagc agtcaaaaca tcaggtactt cgatcttacc ggcaaggaag gatggaaagt
     3481 gtacaggccg gcaccgggcg taagcctggc aggcaaaata gccctgggcg tagtggctgc
     3541 tgccagcgtg gccatgatgg cggccaacag ctaccaggct ggttatgccg cggccggtgg
     3601 cgctacttat aaaggccagt acatgagcaa ccagtctgct gcggattctt atgcccgtga
     3661 tgccgacaac tggggcgcta tagcggtggc ctctttccag gccatgaaca agcgattcaa
     3721 agccacccgc accaccgcca ccatgcaaag catccttacc aagaccgatg atggaaagga
     3781 tgaaggtgtt ggcattgaaa tttacaacaa ggaaacaggt tccaaagaag gcgctgttgt
     3841 gctccgcgac aagaaacccg aatacttttt cgacgacatt ggaaggatcg ttttctggaa
     3901 gcgcaacgac aacagtttca ccggtgtgtt tttctagaca agcatagcaa tactaaatct
     3961 tttccaccat cgctaattgc gatcggctgg tagttgagga aggaagaagg gcttaaatgt
     4021 gcaactgttt actcagggtt gccgtttaag ccttttgctt ttccatttta ccccaag
//
LOCUS       DATIQF010000822         2550 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_271701,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000822 DATIQF010000000
VERSION     DATIQF010000822.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2550
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271701"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..451
                     /locus_tag="VLL95_14135"
     CDS             <1..451
                     /locus_tag="VLL95_14135"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013756.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HSR40049.1"
                     /translation="SLPVYSVSSKGEKENMHICTYVSAVSMTPKRMMVALYHDTQTLR
                     NVELHPHFVLQLLSADQYRIVNQLGKLSGKTIDKIVRLEKRNLLSDWNGFKILKEVLA
                     VMELKVINSMEAGDHKMFLCDVVAWKNLQDGTPLTTSFLHEKGIIRV"
     gene            675..1778
                     /locus_tag="VLL95_14140"
     CDS             675..1778
                     /locus_tag="VLL95_14140"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide epimerase"
                     /protein_id="HSR40050.1"
                     /translation="MHITKIEIYRFSIPMVPFTIATGTMKFAQNMLVYIHTDEFLTGV
                     GECSAFPMIVGETQDTCMVLAKDFAQLWIGKNAADISERMRELDSYIAGNHTAKSAFD
                     IALFDLAAKRKELPLYKFLGGEYFEPESDITIGIGSVEEMAEQALEFVQNKKANILKV
                     KLGKQPQEDIRRMEAIRTAVGPGIGLRIDANQGWDYESAVFALTGMKGMDIQFCEQPM
                     PKLLDEKMPSLRRISSIPIMADESVFNHYDAERLIRNNACDYINIKLSKAGGIQEGLL
                     IHDVCDKADIPNMLGSMLESRVALSAKVHMALSCPNIRFYDLDTCLLGHLEDPVTNGV
                     QYDGMKLKLPDLPGIGADVDPAYLRNCEKIIVQ"
     gene            1798..>2550
                     /locus_tag="VLL95_14145"
     CDS             1798..>2550
                     /locus_tag="VLL95_14145"
                     /inference="COORDINATES: protein motif:HMM:NF018649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1295 domain-containing protein"
                     /protein_id="HSR40051.1"
                     /translation="MIRTAALLLLTLVIIPTLAFKFGQPLDSTQVHMIKSAATIMLAS
                     AGLCFIVSEWTGNCSQFDKLWSILPVVYAWLFAAQSGWDDRMVLMAVLASAWGIRLTY
                     NFARRGGYSWKFWEGEEDYRWEVLRRRKEFQNKWVWRLFNLFFISLYQNTLVLLFTLP
                     PVIAWQVKDKPLGIPDALFAGLFLLLVIIETIADQQQWKFQTSKYRKRDSGEPMTEEE
                     KQGFVSSGLWSKMRHPNYAAEQGIWISFYLLAA"
BASE COUNT          672 a          629 c          649 g          600 t
ORIGIN      
        1 cagcctgcca gtgtattccg tcagcagcaa aggcgagaaa gaaaacatgc atatctgcac
       61 ctacgtaagt gccgtaagta tgacgcccaa gcgcatgatg gtggctttgt atcatgatac
      121 ccaaaccctt cgcaatgttg aattgcatcc gcattttgtg ctgcagttgt tatctgccga
      181 tcaataccgc atcgtgaatc aactgggaaa attatcaggc aagacgattg ataaaatagt
      241 acgcctcgaa aagagaaacc tgctgagcga ctggaatggc ttcaaaatac tgaaagaggt
      301 gctggccgtg atggaactga aagtgatcaa ttcaatggaa gccggcgatc acaaaatgtt
      361 tttgtgtgat gtggtggcat ggaaaaattt gcaggatggc accccgctga ccacttcatt
      421 tcttcatgaa aaaggaatca tccgagttta agaacaccaa tcaccctcat tgtgaagagt
      481 atgcccaaag tggcgtttgt agtcgatcac ccctttcggg tttcctgctg ttgtattgaa
      541 ataggttgaa ggtgcttgcg gatgtcggtt gggaaggaag tccctggatt cgcccagcgt
      601 aaatcattgc tggcacaaag caggttttga tcattggcgc taacaatgca tattgcagca
      661 ttaacactgc tgtcatgcac atcaccaaaa ttgagattta ccgtttttcc attcctatgg
      721 tgccatttac cattgccacc ggcaccatga aattcgctca aaacatgctg gtatacatcc
      781 ataccgatga attcctgacc ggcgtgggcg agtgctccgc attccccatg attgtgggcg
      841 aaacacagga tacctgcatg gtgttggcca aagactttgc ccaactgtgg attggcaaaa
      901 atgccgccga tatttctgaa agaatgcgtg agctggatag ttacattgcc ggcaatcaca
      961 cggcaaaaag cgctttcgac atagcccttt tcgacctggc cgccaagcga aaggaactgc
     1021 cgctctacaa atttttgggt ggcgaatatt ttgaacccga aagcgatatc accattggca
     1081 ttggaagcgt ggaagaaatg gcggaacagg ccctggaatt tgtacaaaac aaaaaagcca
     1141 atatcctgaa agtgaagctg ggcaagcaac cccaggaaga catccgtcgc atggaagcta
     1201 tacgcacagc cgttggccct ggaatcgggc tgcgcattga tgccaaccag ggatgggatt
     1261 acgagtcagc ggtgtttgca ctcaccggta tgaaaggaat ggacattcag ttctgcgagc
     1321 aacccatgcc caaattgctg gatgaaaaaa tgccttcgct tcgtcgcatt tcctccatcc
     1381 ccatcatggc cgatgaaagt gtgttcaacc actacgacgc cgaaaggctc atccgcaaca
     1441 atgcctgcga ctatatcaac atcaagctca gcaaagccgg tggcatacag gaaggattgc
     1501 tgatccacga tgtatgcgac aaagccgata ttcccaacat gctcggcagc atgctggaaa
     1561 gccgggtggc attaagtgcc aaagtgcaca tggccctgag ctgccccaac atacgcttct
     1621 acgatctcga cacttgtctc ctcggccatt tggaagatcc cgtgaccaac ggcgttcagt
     1681 atgatggcat gaagctgaag ttgcccgacc tgcccggcat cggcgccgat gttgatccgg
     1741 catacctgcg caattgcgaa aagatcattg ttcaataaaa acatcagccc catctccatg
     1801 atcagaacgg ccgccctatt gctactgacg ctggtaatca ttccaacgct ggccttcaag
     1861 tttggccagc cgctcgacag cacacaagtg cacatgatca aaagtgcggc caccatcatg
     1921 ctggcttcag ctggtctctg ttttatagtg agcgaatgga caggcaattg cagccagttc
     1981 gacaagctgt ggagcatatt gccagtggtt tatgcctggc tgtttgcggc ccaatcaggt
     2041 tgggatgatc gcatggtgct gatggctgtg ctggccagtg cctggggcat tcgcctcacc
     2101 tacaactttg cccgccgcgg tggttacagc tggaagttct gggaaggtga agaagattat
     2161 agatgggaag tcctccgccg ccggaaagaa tttcaaaaca aatgggtgtg gcggctattc
     2221 aacctgttct tcatttcgtt gtatcaaaac acgctggtgc tgctgtttac gctgccgcca
     2281 gttattgcgt ggcaggtgaa ggataagccg ttgggcattc ccgatgcttt gttcgcggga
     2341 ttattcctgc tgttggtaat catagaaacc attgccgacc agcagcaatg gaagtttcag
     2401 accagcaaat accgcaaacg cgacagcggc gaacctatga ccgaagagga aaagcaaggc
     2461 tttgtaagca gtggcctctg gtcaaaaatg cggcacccca actatgcggc ggaacaaggc
     2521 atctggatta gtttttacct cttggcggcg
//
LOCUS       DATIQF010000823         4219 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_73712, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000823 DATIQF010000000
VERSION     DATIQF010000823.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4219
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73712"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(52..1041)
                     /locus_tag="VLL95_14150"
     CDS             complement(52..1041)
                     /locus_tag="VLL95_14150"
                     /inference="COORDINATES: protein motif:HMM:NF005741.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase-like protein"
                     /protein_id="HSR40052.1"
                     /translation="MNLKTNYMGLKLESPVVVSACPLSEDIGNIMRMEDAGAGAVVMF
                     SLFEEQIRSDSARYEAVSQATSNAFAEAADFFPGMDDYHVGPNEYLEKIRQAKQRTSL
                     PIIASLNGITNEGWIEYAMLMEEAGADGLEVNIYFIPADIHSNAQSVEQRYVDIVKSI
                     RKSVAIPIAVKLNPYFSAIGHMSRQLYEAGANALVLFNRFYQPDFDIQQLKVLPNLQF
                     SDPHEIRLPLLWLAILHGRLPLSLAATSGVNSYNEVVKYLLAGADVAMTASALYKNGI
                     DYITVMNHGLRNWMHHKGFDNVDAFKGAMSQQNISDPTAYERANYIKILESKR"
     gene            complement(1054..1620)
                     /locus_tag="VLL95_14155"
     CDS             complement(1054..1620)
                     /locus_tag="VLL95_14155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40053.1"
                     /translation="MDTEVYSNTGGQSSKATPTAATAKFAAAGKRVGKKDLAMQMMSY
                     GNVYVARVAFGANPQQALLAMREAEAYDGPSIILAYSHCIAHGYDLKDGLSQQHKAVQ
                     SGYWPLLRYNPVLRKKKLNPFVLDSPRPSMTLKEYAYHELRYKVLANTHPAEAEELMT
                     MAQELVNLRWKNYEELATKSASDFVPVG"
     gene            complement(1645..>4219)
                     /gene="nifJ"
                     /locus_tag="VLL95_14160"
     CDS             complement(1645..>4219)
                     /gene="nifJ"
                     /locus_tag="VLL95_14160"
                     /inference="COORDINATES: protein motif:HMM:TIGR02176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016903 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HSR40054.1"
                     /translation="TTGFAMLSSASVQEAHDFALIAQAASLRSRIPFVHFFDGFRTSH
                     EVSKLELIPDEVLRKLIPDDLVIAHRQRSLNPANPFIRGTAQNPDVYFQGRETVNNFY
                     NATPGIVSAVMDEFATLTGRRYSLYEYSGAADAERVIVIMGSGGETVAETAAALNAAG
                     EKTGVVQIRLFRPFDSEAFVKAIPGTVKKIAVLDRTKEPGASHEPLMQDVLTSYVHCL
                     QNGVISSLPKIVGGRYGLSSKEFTPAMVKAVYDELKKDQPKDHFTLGINDDVSHTSLE
                     YDASFTLDESGWRQALFFGLGADGTVGANKNSIKIIGENTPMYGQGYFVYDSKKSGAR
                     TVSHLRFGKQPIRAPYLVSKADFIACHQFNFVEKVEMLDFAKPGAIFLLNSPYSKDEV
                     WNELPGNVQQTIIDKQLKVYVIDATTVARENGMGTRINTIMQTCFFALANVLPKDEAI
                     SEIKHAIEKTYFKKGKAVIEKNFKAVDATLDHLYEVSIPAKATAATAALQIVSKDAPE
                     FVKGVIAPMLAGHGDELPVSAISIDGTWPSGTTQWEKRNISDLVPIWEPDLCIQCGNC
                     SFVCPHSVIRAKFYHEDFLEKAPDGFKSAPINARGFPETKYSLQVYLEDCTGCTLCVD
                     VCPASDPNNRSRKAINMDEKAPVIETEKENIKYFEDIPWNDRSRINFSTVHGAQFLEP
                     LFEFSGACAGCGETPYLKLLTQLFGDRLLVANATGCSSIYGGNLPTTPWAKNKEGHGP
                     AWSNSLFEDNAEFGLGMRITADKQHATAQQLLLEMAPAVVEELANSIFNASQVLESEI
                     VSQRARVNELKAKLISIGDAKSKMLLSVADQLVKRSVWLVGGDGWAYDIGYGGLDHVL
                     A"
BASE COUNT          988 a         1107 c         1032 g         1092 t
ORIGIN      
        1 aaaaaaggac ggcatgaaaa tgccgtccga acctaacact aacaacagtt cctatcgctt
       61 gctttcgagg atcttaatgt agttcgctct ttcgtaagct gtaggatcag agatattttg
      121 ctggctcatg gcgcctttga atgcatccac attatcgaaa cccttatggt gcatccagtt
      181 gcgcaagcca tgattcatga ccgtgatgta atcaatgccg ttcttgtaaa gcgcagatgc
      241 cgtcatggca acgtcagcac ctgccagcag atacttgacc acttcattgt aactgttgac
      301 cccactggtg gctgccagcg aaagtggcag tcggccatgc aggatagcca gccacaacaa
      361 aggcaatcgg atctcatgcg gatcgctgaa ttgcaggttg ggcaatactt tcaactgctg
      421 gatatcaaaa tcgggttggt aaaaccggtt gaacaacacc aacgcattgg cgcctgcttc
      481 gtacaactgg cggctcatgt gaccaatagc gctgaagtat ggattcagct tcaccgctat
      541 gggaatggcc accgatttgc ggatggactt tacaatgtca acataccgtt gctccacact
      601 ttgcgcattg gaatgaatat cggcaggaat gaaatagatg ttgacctcca atccatcggc
      661 accggcttct tccatcagca tggcgtattc aatccaccct tcattggtaa tgccattgag
      721 gctggcaatg atgggcaatg atgtgcgctg cttggcctgg cgtattttct ccaaatattc
      781 gttaggcccc acgtggtagt cgtccatacc aggaaaaaaa tcggcggctt cagcaaacgc
      841 gttgctggtg gcctgcgata cggcttcgta acgggcactg tcgctgcgta tttgttcttc
      901 aaacagcgag aacatcacca ccgccccggc ccctgcgtct tccatgcgca tgatgttgcc
      961 aatgtcttca ctcagcgggc atgccgaaac caccaccggc gattccagct tcaaccccat
     1021 gtaatttgtc ttcaggttca taagctttca gttttatccc accggcacaa aatcgctggc
     1081 cgatttggtg gctagttctt catagttttt ccaacgcagg tttaccagtt cctgtgccat
     1141 cgtcatcagt tcttcggctt cagccggatg tgtgttggcc agtactttgt accgcagttc
     1201 gtgataagcg tactctttca aagtcataga cggcctgggc gaatcgagta cgaacggatt
     1261 gagtttcttc ttgcgcaaaa cggggttgta gcgcagcaat ggccagtagc cactttgcac
     1321 ggctttgtgc tgttggctca aaccatcctt caggtcgtag ccatgtgcaa tgcaatggct
     1381 gtaagcgaga atgatagaag gaccatcata ggcctccgct tccctcatgg ccagcaaggc
     1441 ctgctgtgga ttggccccaa atgccaccct cgccacatac acattgccat agctcatcat
     1501 ttgcatcgcc aggtccttct tacccacccg cttgcctgca gcggcaaact tggcggtagc
     1561 agcggttggc gttgctttgc tgctctggcc accagtgttg ctgtacacct cggtatccat
     1621 caccaatatg tttacgttgc ggccctatgc caatacgtga tccaggccac cgtatccaat
     1681 atcataagcc cagccgtcgc cacctaccag ccaaacgctg cgcttcacca actgatcggc
     1741 tacgctcaac agcatcttcg acttagcgtc gccaattgaa atcagctttg ctttcagctc
     1801 atttacacgg gcacgctgcg atacaatttc cgattccaag acctggcttg cattgaagat
     1861 gctgttggcc aattcttcaa caacggcagg cgccatttcg agcaataatt gctgagctgt
     1921 ggcatgctgc ttgtcggcgg taatacgcat gcccaatccg aattcagcgt tgtcttcaaa
     1981 caaagagttg ctccaggccg gaccatgtcc ttccttgttc tttgcccaag gcgtggtagg
     2041 caggttgccc ccgtagatgg atgaacaacc ggtagcgttg gccaccagca agcgatcgcc
     2101 gaacaactgt gtcaacagtt tgaggtaagg cgtttcgcca caaccggcac aggcgccgct
     2161 gaattcaaac aaaggctcca ggaactgtgc cccgtgaacg gtagagaaat tgatgcggga
     2221 acgatcattc cagggaatgt cttcgaagta cttgatgttt tctttttctg tttcgatgac
     2281 cggcgccttt tcgtccatgt tgatagcctt acggctgcgg ttgttgggat cgctggcggg
     2341 gcatacatcc acgcaaagcg tacaacctgt gcagtcttcg aggtatacct gcaatgaata
     2401 ttttgtttcg gggaaaccac gggcattgat gggtgccgat ttgaatccat ccggtgcttt
     2461 ttccaggaag tcttcatggt aaaacttggc acggatgaca ctatgcgggc aaacgaaaga
     2521 acagttgccg cactgaatgc acaggtcagg ttcccaaata ggtaccaggt cgctgatgtt
     2581 gcgcttttcc cactgcgtgg tgccgcttgg ccaggtacca tcaatgctga tggcgctcac
     2641 aggaagttca tcgccatgac cggccagcat tggagcaatc actcctttca caaactcggg
     2701 agcatccttg ctcacaattt gcaatgctgc tgtagccgct gtggctttgg caggaatgga
     2761 tacttcataa aggtgatcca atgtggcatc caccgctttg aagtttttct cgatgaccgc
     2821 cttacctttt ttgaaataag ttttttcgat ggcgtgtttg atctcgctga tggcttcatc
     2881 ctttggcaac acgttggcca atgcgaagaa gcaggtttgc atgatggtat tgatgcgtgt
     2941 acccatgccg ttttcacggg ccacggtggt ggcatcaatc acatacactt tcagctgctt
     3001 atcaataatg gtctgctgca cattgcccgg cagttcattc cacacttcgt ctttgctgta
     3061 aggactgttg agcaggaaga tggcaccggg cttggcaaag tcaagcatct ccactttctc
     3121 aacaaagttg aattggtggc atgcaatgaa gtcggctttg cttacgaggt aaggagcccg
     3181 aatgggctgc ttgccaaaac gcaggtgcga tacagtgcgg gcaccgctct tcttactgtc
     3241 gtatacaaaa tatccctgtc catacatcgg cgtattctcg ccaatgatct tgatgctgtt
     3301 tttgttggca cctacagtac catctgcacc caggccaaag aacaatgcct ggcgccagcc
     3361 actttcatct agtgtgaaag aggcatcata ttccaagctg gtatggctta catcatcatt
     3421 gattcctaaa gtgaaatgat ctttgggttg atctttctta agttcatcat acaccgcctt
     3481 taccatggca ggtgtaaact ctttgctact gaggccatag cgaccaccta caatttttgg
     3541 caggctgctg atgacaccat tttgcaaaca gtgaacataa gaggtgagca catcctgcat
     3601 caatggctca tgtgaagccc cgggttcctt ggtacggtca agcactgcta ttttctttac
     3661 agtgcccggt atggctttta caaatgcttc cgaatcgaag ggacggaaca aacggatctg
     3721 caccactccg gttttttcac cggcagcgtt caatgccgcg gctgtttccg ctacggtttc
     3781 gccacccgaa cccatgatca cgatgaccct ttccgcatcg gcggctccgc tgtattcata
     3841 caaactgtag cggcggccag tcaatgtggc gaattcatcc atcactgccg atacaatacc
     3901 gggtgtggca ttgtaaaagt tgttgacggt ttcacgcccc tggaaataca catcagggtt
     3961 ttgtgcagta ccgcgaatga aaggattggc aggattcaac gaccgttgac ggtgtgcaat
     4021 caccaggtca tccggtatta atttgcgaag cacttcatca ggaatcagtt ccagtttgct
     4081 cacttcatga gaggtacgga atccatcaaa gaagtgcaca aaaggaatgc gtgaacgaag
     4141 cgaagcggct tgtgctatca aggcgaagtc gtgagcttcc tgcacggaag cgctgctcag
     4201 catggcaaag ccagtagta
//
LOCUS       DATIQF010000824         4117 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_271777,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000824 DATIQF010000000
VERSION     DATIQF010000824.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4117
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271777"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..341
                     /locus_tag="VLL95_14165"
     CDS             <1..341
                     /locus_tag="VLL95_14165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40055.1"
                     /translation="KSTLSPWQLALCGAVLYLLSDFFSTVFRNGYFGIQWLGPLFIGL
                     WVAQSQQRKWFWYCLAPALLLILFHPFFIPLRLTMAEMILAGSLFGLALMPVSAKPVE
                     LQKTGGFSTL"
     gene            452..778
                     /locus_tag="VLL95_14170"
     CDS             452..778
                     /locus_tag="VLL95_14170"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HSR40056.1"
                     /translation="MNALPDSKASKLRAVKGRVEIDIQKCKGCELCTTACKEHALSLS
                     NQINLKGYRYIIANNDVCTGCVNCALVCPDAVITVYRTKPAGKREVLNEKDAKAVLQQ
                     ALPSKD"
     gene            796..1860
                     /locus_tag="VLL95_14175"
     CDS             796..1860
                     /locus_tag="VLL95_14175"
                     /inference="COORDINATES: protein motif:HMM:NF005507.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate dehydrogenase subunit
                     VorB"
                     /protein_id="HSR40057.1"
                     /translation="MEFKLMKGNEALAEAAIRAGCDAYFGYPITPQSEVLEYLAREMP
                     LHGRVVLQAESEVASINMVYGAAGAGFRAMTSSSSPGISLMQEGISYMAGAELPALIV
                     NVNRAGPGLGTIQPGQGDYFQATKGGGHGDYHLIVLAPATVQEMADFVYLGFDLADKY
                     RNPVMILSDGAIGQMMEKVKFPDYVIPKKDKPWATTGKPANRPRNYITSLHILPEKME
                     VHNQHLEAKFKSIRDNEVRFEEIETDDAEVLLVAYGLSARICHKALDLARAKGIRAGL
                     LRPITLYPFPYQRLQELADQVDLMMSVELNAGQMVEDVRLAVAGKVPVGFFGRMGGMI
                     YTPEDVLQHLETIMQEQYVS"
     gene            1850..2674
                     /locus_tag="VLL95_14180"
     CDS             1850..2674
                     /locus_tag="VLL95_14180"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HSR40058.1"
                     /translation="MSVEEMVLPGNKEAALPATGCVQEEVYEMVYHRPATLLEVNMHY
                     CPGCAHSLVHKLIMEVVEELGIQEQTIGIAPVGCSVFAYDYMDIDMQEAAHGRACAVA
                     TGLRRLMPEKYIFTYQGDGDLAAIGLAETLHAINRGENLLIVFMNNAVYGMTSGQMAP
                     TTLPDMVTTTSPFGRDPMQSGMPMRMAEMVATLPGAIYVTRQTVNSANAVRKTKKALL
                     KAFQLQQQQKGTSFIEVLSNCPSNWKMTPVESMQFIGEEMVKTFPLCDIKLPATTD"
     gene            2696..3262
                     /locus_tag="VLL95_14185"
     CDS             2696..3262
                     /locus_tag="VLL95_14185"
                     /inference="COORDINATES: protein motif:HMM:NF013707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HSR40059.1"
                     /translation="MLEELVVAGFGGQGVLSLGMTLAYAGMVEDKEISWMPSYGPEMR
                     GGTANCITILSDQPISSPIIAQFDSAIILNQPSMDKFANRVKPGGLLLYDSSNMLHPS
                     TRTDITVVGLPATNEALRQKQPKIMNMLMLGAYLHFKPLLKPASIEEALKKVLPEKYH
                     HMLPVNMAALSQGEELLLKSAAPDAVGA"
     gene            3312..4031
                     /locus_tag="VLL95_14190"
     CDS             3312..4031
                     /locus_tag="VLL95_14190"
                     /inference="COORDINATES: protein motif:HMM:NF024197.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EcsC family protein"
                     /protein_id="HSR40060.1"
                     /translation="MTMYEQKAWKEMMAWQRQMQRRPGFFNSLSKSLQNKINQYIPAK
                     VHEAVTTAIKQMVRGVLFGAAHSTSVPLAGVNFEERESALLKRIAFYQKTAAIEGGVT
                     GAGGLLLGLADFPILLAIKIKLLFEIASLYGLDINDYRERVYLLHIFELAFSSDQHRR
                     QVYLKMVDWRSKAQALPDDIHAFDWRSFQQEYRDYIDLAKMAQLIPLIGAPVGVVVNY
                     RLLKKLGTTAVNAYRMRLLNV"
BASE COUNT         1023 a          994 c         1121 g          979 t
ORIGIN      
        1 agaaaagcac tttgtcgcca tggcagctgg cgctatgcgg tgctgtgctc tacctcctca
       61 gcgatttctt ttctactgtt ttcaggaacg gctatttcgg aattcaatgg ctggggccat
      121 tgttcatcgg gttgtgggtc gcccaaagtc agcagcgaaa atggttttgg tactgcctcg
      181 caccggcgtt gctgctgatc ctttttcacc cattctttat tcccttgcga cttacaatgg
      241 ccgaaatgat attggccggc tctttgtttg gcctggcgct gatgcctgtg tcggccaaac
      301 cagtggagtt gcaaaagaca ggtggttttt cgactttatg attggcaatt ttcctgacat
      361 aaatcatcct acggcgtgac gcaggatgta ttgctgcctg ctatatagcc agacctttgc
      421 ttcagattgc ctgatattca aacatagcca tatgaacgcc ttacctgatt ccaaggcttc
      481 gaaattgcgt gctgtaaaag gcagggtaga aattgatatc caaaaatgca agggatgtga
      541 attgtgcacc actgcctgca aggaacacgc attaagtctt tccaaccaaa tcaatttgaa
      601 gggataccga tacatcattg ccaacaatga tgtgtgcacc ggttgcgtaa actgtgcgct
      661 ggtatgcccc gatgcggtga tcaccgtgta ccgaaccaaa ccggccggta agcgtgaagt
      721 actgaacgaa aaagatgcga aagcggtgtt gcagcaagca ttgccctcca aagattaacc
      781 ctcaaaaact gtggtatgga attcaaactg atgaaaggaa acgaagcatt ggcggaggcc
      841 gctattcgtg cagggtgcga tgcctatttc gggtatccca tcacaccgca gtcggaagtg
      901 ctggagtacc tggcccgtga aatgccttta cacggccgcg tagtgttgca ggcggaaagt
      961 gaagtggctt ctatcaatat ggtgtatggc gcggcaggtg cgggtttcag ggccatgacc
     1021 agttcttcat cgccgggcat cagcctgatg caggagggca tttcgtatat ggcaggtgct
     1081 gaattgccgg cgctcattgt gaatgtgaat cgtgcaggcc ccgggttggg cactatccag
     1141 ccgggccagg gcgattattt ccaggccacc aaaggtggcg gtcatggcga ttatcacctg
     1201 atcgtgttgg caccggccac ggtgcaggag atggctgact tcgtgtacct cggttttgac
     1261 ctggccgaca aataccgcaa cccggtgatg atcttgtcgg acggcgccat cgggcaaatg
     1321 atggagaagg taaaattccc cgattacgtc attccaaaaa aagataaacc ctgggccact
     1381 accggcaagc ctgccaaccg gccaagaaat tatatcactt ccctccacat tctgcccgag
     1441 aaaatggaag tgcacaacca gcacctggag gcaaaattca aatccatccg cgacaatgaa
     1501 gttcggtttg aagagataga aacagacgac gctgaagtat tgctggtggc gtatggcctc
     1561 agtgcccgca tttgccacaa ggcattggac ctggcccggg ccaaagggat cagggcagga
     1621 ctgctgcgtc ccattacact ctatcctttc ccataccaac gactgcagga actggcagac
     1681 caggtagacc tgatgatgag tgtggaactg aatgccggac aaatggtaga agatgtgcga
     1741 ctggctgtgg ccggtaaagt gccggtagga tttttcggca ggatgggtgg catgatctac
     1801 acaccagaag atgtgctgca acatttagaa accataatgc aagaacaata tgtcagttga
     1861 agaaatggtt ttacccggca acaaagaagc cgctcttccc gcaaccggat gcgttcagga
     1921 agaagtgtat gaaatggtgt accaccggcc tgccacgctg ttggaggtga acatgcacta
     1981 ttgcccgggt tgtgcccaca gcctggtgca caaactcatt atggaagtgg tggaagaact
     2041 gggcatacag gaacagacca taggcattgc acccgttgga tgttccgtat ttgcctatga
     2101 ctatatggac attgacatgc aggaggctgc tcatggccgg gcctgcgctg tagctaccgg
     2161 cttacggcgg ttgatgcctg aaaaatacat cttcacttac cagggtgatg gtgacctcgc
     2221 ggccataggc ctggcggaaa ctttgcatgc catcaaccgt ggagagaatt tgctgatcgt
     2281 gttcatgaac aatgccgtgt atggaatgac cagcggccaa atggcaccca ctacacttcc
     2341 ggatatggta accaccacca gtccattcgg ccgtgacccc atgcaatcgg gtatgcccat
     2401 gcggatggcc gaaatggtcg ccaccttgcc gggtgccatc tatgtgaccc gacaaaccgt
     2461 gaacagcgcc aatgcggtgc gtaaaaccaa aaaggcgctg ctgaaggctt ttcaattgca
     2521 gcagcagcaa aagggaacca gttttattga agtgctgagc aactgtccat cgaactggaa
     2581 gatgacccct gtggaaagca tgcaattcat tggcgaagaa atggtgaaaa catttccgct
     2641 gtgcgatatc aagttgccgg caaccaccga ttaatacacg tttaattcta ttgatatgtt
     2701 ggaagaactg gtagtagcag gatttggcgg gcaaggtgtt ttgtcattgg gcatgacact
     2761 ggcctatgcc ggaatggtag aagacaagga aatatcctgg atgccttcgt atggtcctga
     2821 aatgcgtggc ggcacggcca actgcattac catcctgtct gatcagccga tcagttcgcc
     2881 gatcattgcg caattcgaca gtgccattat tctgaaccaa ccttccatgg acaagtttgc
     2941 caaccgggtg aagcccggag ggttgctttt gtatgacagc agcaatatgc tgcatcccag
     3001 caccaggact gatatcactg ttgtgggact gccggctacc aatgaggcgc tgcgtcaaaa
     3061 acaacccaaa atcatgaaca tgctgatgtt gggtgcctac ctgcatttca aaccactgtt
     3121 gaagcccgct tccattgaag aagcgctgaa gaaagtattg ccggagaagt accatcacat
     3181 gcttccggtg aatatggccg ctttgtctca aggagaggaa ttgttgttga aatcggctgc
     3241 ccctgatgcg gttggtgcct gaacctgctt tttatttacg agcttcgttg cagtcctaac
     3301 tccgggagag catgacgatg tatgaacaaa aggcatggaa agaaatgatg gcctggcagc
     3361 ggcaaatgca gcgaaggccc ggctttttca acagcctgtc caagtcgctg cagaacaaga
     3421 tcaaccaata cattccggcg aaagtgcatg aagccgtcac cactgccatc aagcaaatgg
     3481 tgagaggggt gctgtttggc gctgcgcaca gcacttcggt gccgttagct ggcgtaaatt
     3541 ttgaagaacg tgaatcggct ttgctgaagc gcattgcttt ctatcaaaaa acggccgcca
     3601 tcgaaggagg ggttacgggg gccggtgggc tattattggg cctggcagat ttccctatcc
     3661 tgcttgccat caaaatcaag ttgttgtttg aaatcgcttc cctgtacggg ctggatatca
     3721 atgattaccg ggagcgggta tacctgttgc acatatttga actggctttt tccagcgacc
     3781 agcacaggag gcaggtgtat ttgaaaatgg ttgactggcg atctaaggcg caggccttgc
     3841 ccgatgatat ccatgccttc gactggcgca gctttcagca ggaataccgc gactatatcg
     3901 acctagccaa aatggcgcag ctgatcccgc tgattggcgc accggtgggt gtggtggtaa
     3961 actaccgcct gctgaaaaaa ctggggacta ccgccgtgaa tgcttaccgc atgcggttgc
     4021 tgaatgtttg atcttattcg ccagcgtaag ggtctttgat ttttactgcc atgtagcgga
     4081 tcttgctgaa ggtgacacgg cagttattgc ctgtggg
//
LOCUS       DATIQF010000825         2188 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_28445, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000825 DATIQF010000000
VERSION     DATIQF010000825.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2188)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2188
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28445"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2188)
                     /locus_tag="VLL95_14195"
     CDS             complement(<1..>2188)
                     /locus_tag="VLL95_14195"
                     /inference="COORDINATES: protein motif:HMM:NF019325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CARDB domain-containing protein"
                     /protein_id="HSR40061.1"
                     /translation="TYSQRSVSQSGVQDTVISVPAGVAQLKVLLYWHDPAASVLAAKT
                     LVNDLDLQVIGPGGTVLPLVISSDPAQVTNAAIQDTDRTNNSEQVVINTPTPGNYTIR
                     VRGYDVSVNAPQIYAVAFDYLPLGARISVPFQGESWASGAAIPVSWDFEGAGNNSFTL
                     EYSLNDGSTWTLISNGINGTDRFYSWTPPADAATTTARMRITRNVTGETFTTGPFTII
                     GRPTQSTAASTEQCEGYFKINWTAVTGADGYDVLLKQGAEMRVVATVSAATTTFTISG
                     LSKDSTYYAAVRAKLNGKAGWWNNALERRPNTGTCTGTISDGDLALDSITAPISGRAF
                     TSTALGSNVDLKIRIKNLDDAAASAFNLKYSINGGGFTTVPVSQALAAGATYTHTISG
                     INLSSTGDYALVAIVENTASADAMAKNDTFRTTVRHLPNPVLSLASPLTDGFESLAVQ
                     TVARNTTGLAGTDRWDYTKTDTYDRLRTRAQSDIARSGQRAVTLDVSKSTPYATNPNN
                     NLVGTFNLSGYNTSNDIRVDFWFQHHGAGQGAGSQNKVWARGSDTDPWVEVYDLGVNQ
                     PQMPGVYKQSVSIELADSLAAKGQQFGSSTQVRFGQRSLYAMGDRLHFGGYSFDDVRI
                     YQAVNDIAVLGIDAPSQVACELTSATPVTIVVRNTMNATVTNVPVSFSINGGTAVNEV
                     IPSIAANSTINYTFAATANMATAGSYSIMATVSKEMITCQTITRQQS"
BASE COUNT          466 a          569 c          615 g          538 t
ORIGIN      
        1 gtgactgttg ccgagttatt gtctggcacg ttatcatttc cttactgacc gtggccataa
       61 tggaatagct gccggcagta gccatgttgg cggtggcggc aaatgtgtaa ttgatggtgc
      121 tgttggcagc aatgctggga atgacttcat tcaccgctgt gcctccatta atgctgaagg
      181 acacaggcac attggtgacg gtggcattca tggtgtttcg aaccacaatg gtcacaggag
      241 tggcgctggt gagttcgcat gccacctggg atggcgcatc aattcccagc accgcgatat
      301 cattcacggc ctggtaaatg cgcacatcat caaaactgta tccgccaaaa tggagacggt
      361 cgcccatggc atacaaggac cgctggccaa agcgtacctg cgtggagctg ccgaactgct
      421 gccctttggc ggccagtgaa tcagcgagtt caatgctgac gctttgcttg tatacaccgg
      481 gcatctgcgg ttggttgacg ccgaggtcgt acacttctac ccacggatcg gtatcggacc
      541 cacgggccca cactttgttc tgggagcctg caccctggcc ggcaccatga tgctgaaacc
      601 agaaatcaac ccggatatcg ttgctggtat tgtagccgga aaggttgaaa gtgccaacca
      661 ggttgttgtt ggggttggtg gcgtatggcg tcgatttgct tacatctaat gtaacggcac
      721 gttgtccgct gcgggcaata tcgctttgtg ccctggtccg gagtcggtcg taggtatcgg
      781 tcttagtata atcccatcga tcagttcctg cgaggccagt ggtgtttctt gccacggttt
      841 gaacagccag gctttcaaaa ccatcagtta gcgggctggc caacgaaaga accgggttgg
      901 gcaaatgccg caccgtcgtc ctgaaagtat cgtttttggc catcgcatcc gctgaagccg
      961 tattctctac tatggccacg agggcataat cgccggtgga cgacagattg atgccgctga
     1021 tggtatgggt gtaagtagcg cctgctgcta gagcttgtga aacaggaacg gttgtaaacc
     1081 cgccgccatt gatgctgtac ttgaggttga aagcactggc ggccgcatca tccaggttct
     1141 tgatcctgat cttcaggtcg acattactgc ccagcgctgt gctggtaaat gcccggccgc
     1201 tgatgggcgc tgtaatggaa tccaatgcca ggtcgccatc gctgatggtg ccagtgcagg
     1261 tgccggtatt ggggcggcgt tccagcgcat tgttccacca acccgctttt ccattcaatt
     1321 tggccctgac agcggcatag tatgtgctgt cctttgacaa accactgatg gtgaaggtgg
     1381 tggtggctgc agaaacagta gccacgaccc gcatttctgc accttgcttc agcaaaacat
     1441 cgtagccatc agcacccgtt actgccgtcc agttgatctt gaaatatcct tcgcactgtt
     1501 cagtactggc agctgtcgat tgcgttggcc ggccaataat ggtaaacgga ccagtggtaa
     1561 atgtttctcc tgttacgttc ctggtgatcc gcatacgggc agtggtggta gccgcatctg
     1621 caggtggtgt ccaactgtaa aaacgatcgg taccattgat gccattggaa atgagtgtcc
     1681 aggtgctgcc gtcattcagc gaatattcga gagtaaagct gttgttgcca gctccttcaa
     1741 aatcccagct cacggggata gcggcacccg aagcccagct ttcaccctgg aaaggcacac
     1801 tgattctggc gcccaatggc aaatagtcaa aggctactgc ataaatctgc ggcgcattta
     1861 ccgatacatc ataaccccgc accctgatgg tgtagttgcc aggggtgggt gtattgatca
     1921 ccacctgctc gctgttgttg gtgcggtcgg tatcctggat ggcggcattg gttacctggg
     1981 cagggtcact gctgattacg agtggcagta ccgtaccacc tggtccaatc acttgtaagt
     2041 ccaaatcatt caccagtgtt ttggcagcca gcacactggc agcagggtcg tgccagtaga
     2101 gcaatacttt caattgagct acaccggcgg gcacagagat cacggtatcc tgcacaccac
     2161 tttggctcac gctgcgctgg ctgtaggt
//
LOCUS       DATIQF010000826         4170 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_286492,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000826 DATIQF010000000
VERSION     DATIQF010000826.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4170
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286492"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..980
                     /locus_tag="VLL95_14200"
     CDS             <1..980
                     /locus_tag="VLL95_14200"
                     /inference="COORDINATES: protein motif:HMM:NF026018.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="polysaccharide biosynthesis C-terminal
                     domain-containing protein"
                     /protein_id="HSR40062.1"
                     /translation="LAFKLVTFSGFMTLFAFSYLPAVIIIIYVVRKHHGFPIHFNFSK
                     VSRRLGLKMVSLGSFVFLTTVSNVAFVVCDTLFLASLYNFSQAAVYSVAQYFSQVLEV
                     PMRSMQTSSVPLISEYWRAKNMTGLQSVYRKSCINLLVAGIGLGGLIIVNVHNIERFF
                     PTAYAAMVVPIVILVVSRWVNLGTGLNAVIIQLSSYWRFDFASTLVYSFIGIPLNYLL
                     ITNYGMIGAAIANLVAMVIYNSIRFAFLWIKFGLQPFTLRNLAVLMAGMALIAAVYFI
                     PALDNLYVDGFLRSGLFVALFGFIVIRFRLSDEIMQLWEKWSRKLLRSK"
     gene            992..1912
                     /locus_tag="VLL95_14205"
     CDS             992..1912
                     /locus_tag="VLL95_14205"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR40063.1"
                     /translation="MNQVPAISVVICTYNRQKFIGACLECLSKQTMAPNDWEVIVVDN
                     ASTDQTASIVQEFLAVHPQLPFRYVHEASKGLSFARNRGIAEARADIVTFIDDDAEAV
                     PHFVATILSFMQQHPEAAGVGGRVIPKYSEKPEPKWMNKFLNGYIGKVDHGGAPRLFT
                     GKMKYPIGCNMTYRKNLMLQAGGFNNQLSFRGDDKHIFYVVTRLNPNVYYLHEALVHH
                     NIDANRLSFDYFKKLFLITGHEERKRVMSEKGSLAVAKKAIEYLAKFGVSLAIWLLYT
                     LGGHESKGRYTMYSQWFTLLGFLKKEVFVR"
     gene            1979..3562
                     /locus_tag="VLL95_14210"
     CDS             1979..3562
                     /locus_tag="VLL95_14210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40064.1"
                     /translation="MTIEQKQLKALMYMKGKWNIAGMFFVIMALVMAMKSNAQKITYT
                     QPDRNENRQTNFEIIGKYGDHYLIFKNYRASNYISVFDASMALVKNENMPYMPEKIIE
                     ANFVSYPDFSYLFFQYQYKGVVFCKAVKIGPDGKNLTEPIDIDTTIVGSNTNSKIYQI
                     TPSEDKSRIMVFRINSKNEQRLLFKTLLFDKDLTLLHSTKELSLRMSDRSDFLTDFNL
                     DNDGNLVFGKGIRGGQNENITKFFLHVKWAKADSFYVRELAFDRNSLDEVKLKMDNFN
                     NRYLFVAFYYNARRGGTIEGIGNAIFDKNQKEWVVRNAIPFSDEIREDARGQNSLKNA
                     FQDYFIKDLTIRSDGSFLVNSESLYQTSRGNVSPYNRWNMMNPSMMSPMDYYRYGGYG
                     SPWGWGGPYGPSNTTRYNADNVMILAFNKEGKLMLSNFVRKAQYDDNNENMVSYQMVN
                     TGNGLQYIYNDYDRREVVLTYQTLTPKGQVIRNPTIKGLARDFNFIPRFSKQVDKRVV
                     IIPCLYRNTLCFAKLEFDE"
     gene            3693..>4170
                     /locus_tag="VLL95_14215"
     CDS             3693..>4170
                     /locus_tag="VLL95_14215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40065.1"
                     /translation="MAILLKLVYVGEALPAGGYSDPGGLLVPFINQKMVPVFHTRFLP
                     VFSLILLLGSAIYANLVVNNRRMFSQRHALLALSFLLFTGLFPGTNLQLPALLLVPVQ
                     IGIFSQLTQLYQSSSPRSVIFNVGMLAGAGYLLYHPFIFLLPGCFIGLAYMRPFRLA"
BASE COUNT         1023 a         1070 c         1026 g         1051 t
ORIGIN      
        1 tgctggcttt caaactggtt actttttccg gcttcatgac gctgttcgcc ttcagctacc
       61 tgccggccgt catcattatt atttatgtgg ttcgaaagca ccatggtttc cccattcatt
      121 tcaacttcag caaagtcagc cggcggctgg gtctcaagat ggtaagcctg ggctccttcg
      181 tatttctgac cacggtgagc aatgtggcat tcgtggtgtg cgacaccctg ttcctggcca
      241 gcctttacaa tttcagccag gccgcggtgt actcggtggc gcagtatttc agccaggtgc
      301 tggaagtacc catgcgcagc atgcaaacca gcagcgtgcc gctgatcagc gaatactggc
      361 gggctaaaaa catgaccggc ttgcaaagtg tgtaccgcaa gagttgcatc aaccttttgg
      421 tggcgggcat tggtctcggt ggcctgatca tcgtgaatgt ccacaacatt gaacgcttct
      481 tcccgacggc ctacgcggcc atggtggtgc ccatcgtcat cctggtggta agccgctggg
      541 tgaacctggg cacagggctc aatgctgtaa tcattcaact gtcctcttac tggcggttcg
      601 actttgccag caccctggtg tattccttca ttggcattcc gcttaattat ttgctgatca
      661 ccaattacgg tatgattggc gccgccattg ccaacctggt ggccatggtc atttacaaca
      721 gcatccgctt tgcgtttctg tggatcaagt tcggcctgca acccttcacg ctgcggaacc
      781 tggccgtatt gatggcaggc atggccctta tcgccgccgt gtatttcatc ccggccctgg
      841 ataacctgta tgtggatggc ttcctccgca gcgggctgtt cgttgcattg tttgggttta
      901 tcgtcattcg tttcaggctc agcgatgaga tcatgcagtt gtgggaaaaa tggagccgga
      961 aactgcttcg ttcgaaataa aatttgcagg tatgaaccag gtcccggcta tttcggtagt
     1021 gatatgcact tacaaccgcc agaagtttat tggcgcttgc ctggaatgcc tttcaaagca
     1081 aaccatggca ccgaacgact gggaagtgat agtggtggac aatgccagca ccgaccaaac
     1141 cgcctccatt gtgcaggaat ttctggccgt ccatccgcag ttgccgtttc gctatgtgca
     1201 cgaagccagc aaagggctga gttttgcccg caaccggggc attgcggaag cccgtgccga
     1261 tatcgttact ttcattgatg acgatgccga agccgtgccg cattttgtag ccaccatcct
     1321 ctcctttatg cagcagcacc ccgaagcggc cggtgtgggc ggcagggtga tacccaaata
     1381 cagcgaaaag cctgaaccga aatggatgaa taaattcctg aacggctaca tcgggaaagt
     1441 ggatcatggc ggcgctcccc gcctgttcac gggcaaaatg aagtatccca ttggatgcaa
     1501 catgacctac cgcaaaaacc tgatgctgca ggccggcggt ttcaataacc agctctcctt
     1561 tcgcggcgac gacaaacaca ttttttacgt ggttacccgt ctcaatccaa acgtgtatta
     1621 cctgcatgag gcattggtac accacaacat cgacgccaac cggttgagct tcgactactt
     1681 caaaaaactc ttcctgatca ccggccacga agagcggaag cgggtgatga gtgaaaaagg
     1741 ttcgctggcg gtggcaaaga aagccattga atacctggct aagtttgggg tctccctcgc
     1801 catttggttg ctgtacacgc tggggggcca tgagtccaag gggcgttata ccatgtactc
     1861 ccagtggttc acattgttgg gatttcttaa aaaagaggta tttgtacgct gatacaacgt
     1921 ttttttacca ttcgatcagg catttttcgc atcaaagggt ttgaaatttg ttagtagctt
     1981 gaccatcgaa cagaaacagc taaaagcact gatgtatatg aaaggcaaat ggaatattgc
     2041 aggaatgttt tttgtgatca tggcccttgt aatggccatg aaaagcaatg cccaaaaaat
     2101 tacctacacc cagcccgacc gcaacgaaaa caggcaaacc aactttgaga tcattggtaa
     2161 atacggcgat cattatctta ttttcaagaa ctacagagcc agcaactaca tctccgtttt
     2221 tgatgccagc atggccctcg tgaaaaacga gaacatgcca tacatgccag aaaagatcat
     2281 cgaagccaat tttgtatcct accccgattt cagctacctg tttttccaat accaatacaa
     2341 aggggtggtg ttttgcaaag cggtaaaaat tggccctgac ggcaagaacc tgactgaacc
     2401 catcgatatc gacaccacca ttgtaggcag caataccaac agcaagatct atcagatcac
     2461 gccgagcgaa gacaagagtc gcatcatggt gtttcgcatc aacagtaaaa atgaacagcg
     2521 cctgctattt aaaacgctgc tgttcgacaa agacctcacc ttgctccact ccaccaagga
     2581 gttgtcgctg cgcatgtcgg accgcagcga ttttttgacc gattttaatt tggacaacga
     2641 tggcaacctc gtatttggca aaggcattcg gggtggtcag aacgaaaaca tcaccaagtt
     2701 tttcctgcat gtaaaatggg ccaaagccga cagtttctat gtacgtgagc ttgcgttcga
     2761 ccgcaattcg ctggatgaag tgaaactgaa aatggacaac ttcaacaacc ggtatttgtt
     2821 tgtggctttt tactacaatg cccgccgcgg cggcaccatt gaaggcattg gcaatgccat
     2881 tttcgacaag aaccagaaag aatgggtggt acgcaatgcc attcctttca gtgacgagat
     2941 cagggaagat gcccggggac aaaacagcct gaaaaatgca ttccaggatt atttcatcaa
     3001 agacctcacc atacgaagcg acggctcttt tcttgtgaat tcagaaagcc tgtaccaaac
     3061 ctccaggggc aatgtaagcc cttacaaccg atggaatatg atgaacccct ccatgatgtc
     3121 tccgatggat tattaccggt atggcggcta cgggtcgccc tggggctggg gaggccctta
     3181 cggcccttcc aataccacaa ggtacaatgc cgacaatgtg atgatcctgg ccttcaacaa
     3241 agagggcaaa ctgatgctga gcaactttgt gcgcaaagcg cagtacgatg acaacaacga
     3301 aaacatggtg agctaccaaa tggtaaatac cggcaatggg ttgcaataca tttacaatga
     3361 ttacgaccgc cgcgaagtgg tactcaccta ccaaacactg acgcccaagg gtcaggtcat
     3421 caggaatcct accattaaag gactggcccg cgattttaat tttatccctc ggttttcaaa
     3481 acaggtggac aagcgagtgg tgatcattcc ttgtttgtac cgaaacacct tgtgctttgc
     3541 caaactggag tttgacgagt aagcgtaccg atgtgaaaat tttgcactga aagggccttc
     3601 gccaatacct acatttggcg ccaacaagca tttgaatagt ggttggctat tttaaagatc
     3661 ggaacgcact gcaatttcca gcactcatac tggtggcaat actattgaag ctggtatacg
     3721 tgggcgaagc gctgcccgcc ggcggctatt ccgatccggg cgggctgttg gttcccttca
     3781 tcaaccaaaa gatggtgccg gttttccaca ccaggttttt gccggttttt tcgctgatcc
     3841 tgttgctggg ctcggccatc tatgccaacc tggttgtcaa caaccgaaga atgttcagcc
     3901 agcgccatgc attgttagcg ctcagtttcc tgttgttcac cgggctgttt ccaggcacca
     3961 acctccaact gccggccttg ctgctggtgc cggtgcaaat tggtattttc tcacagctta
     4021 cgcagttgta ccaaagctcc agtcccaggt cggtcatttt caatgtgggc atgctggccg
     4081 gtgcgggcta cctgttgtac cacccgttta ttttcctgtt gccgggttgc tttatcggtt
     4141 tggcctacat gcgtcctttt cgcctggcag
//
LOCUS       DATIQF010000827         2666 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_210985,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000827 DATIQF010000000
VERSION     DATIQF010000827.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2666
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210985"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(261..1613)
                     /locus_tag="VLL95_14220"
     CDS             complement(261..1613)
                     /locus_tag="VLL95_14220"
                     /inference="COORDINATES: protein motif:HMM:NF044745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HSR40066.1"
                     /translation="MPVNRRHFLQSSALLSAGMLLRPDALFAAPGLDKVRVGIIGVGL
                     RGQNHLDLLLRRADVQLVSICDIDERMLKDSMDMITQSGKPMPKVYKGDNYAYRKLLE
                     AKDIDAVIIATPWEWHKPMIIDSLERGIKYVGTEVMLGITLQDHWDVVHAAEKHKAQV
                     MQLENVCYRRDVMAVLNMVRQGVFGELVHLQGGYQHDLRGVKFNDGKTPYDSGVEFGE
                     KGFSEARWRTQHSVDRNGDLYPTHGIGPVAMMIDINRGNRFTKLSSMATKSRGLHNYI
                     VEKGGADHPNAKVKFKLGDVVTTQIACANGETIILQHDTNLPRPYSLGFRVQGTKGLW
                     MDVNKSIYIEGKSKPHQWEEAKAWLEKYDHPLWKKYAADTQGAGHGGMDFFVIHAFIE
                     SVKRQTPTPQDVYDAAAWSAITPLSEISIAEEKMVDFPDFTNGQWKNRKNTFAIDDSY
                     "
     gene            1698..>2666
                     /locus_tag="VLL95_14225"
     CDS             1698..>2666
                     /locus_tag="VLL95_14225"
                     /inference="COORDINATES: protein motif:HMM:NF016159.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein"
                     /protein_id="HSR40067.1"
                     /translation="MNAGNVSIVKAVVHRVGNMSRGEKLVLSENQLTLNDDHVRQMLA
                     KYFLQHFNEHEQYRFTHVSSLGLNEVYTYAKHIFHQPDSFMEESRHLAQLLYQVSTHS
                     RIKEGELYVVQLGNLMLDNEDMEALVLVKSESKDTFLKLLQHGKSLEVVAEEGINLGK
                     PDKACLILKTQEADGFRVCVIDNSNKQQDAQYWVKEFLQIEPVADNYHHTNEVLSLCR
                     QFVTQELPEHFEVTKGQQIDMMQRGLDYFKEKEQFNMEEFTTEVIAYPEMVEQFHQFK
                     DNYEKNRQVSIDDSFDIHLSAVNKQSKAYKSVLKLDKNFHIYIHGRR"
BASE COUNT          671 a          678 c          650 g          667 t
ORIGIN      
        1 gctgcaacag gtaatgcctg cccattgcat cagtcaccct aaaggtcggg ttgatcaaac
       61 cttcggtaat aggctccgaa tccatgaggc taatgccaaa agctgcacat atctctttta
      121 gtggtggcat ggtaaatatg catggctgat taaaccacag agaaatcaga gtacgcactg
      181 agtatcacag ggaaaatttc tcctttacct cagtgatttc ctccgtttac tcagtggtga
      241 aaaaatcaat ctatctttct tcaataacta tcatcaattg caaaagtgtt tttcctgttt
      301 ttccattggc cattggtaaa atccgggaag tctaccattt tttcttccgc tatggatatt
      361 tcactcaagg gggtgatggc actccaggca gctgcatcgt acacatcctg tggggttggc
      421 gtttgccgct tcacactttc aataaaagcg tggatcacga aaaagtccat gccgccgtgc
      481 ccggcgcctt gcgtatcggc agcgtatttt ttccaaagcg ggtgatcgta tttctccagc
      541 catgctttgg cttcttccca ttggtggggt ttgcttttcc cttctatgta aatgctcttg
      601 tttacatcca tccacaagcc cttggtccct tgcaccctga agcccagcga ataagggcgg
      661 ggcaggttgg tatcgtgctg caggatgatc gtttcgccat tggcgcaggc aatttgggtg
      721 gtcaccacat cgcccaattt gaatttcact ttggcattgg gatgatcggc acctcctttc
      781 tctacaatgt agttgtgcag gcccctgctt ttggtggcca tggaagaaag tttggtaaag
      841 cggttgccgc ggttgatatc gatcatcatg gctaccggtc ctatgccatg agtgggatac
      901 aggtcgccat ttctatccac ggaatgctgc gtacgccagc gtgcttctga aaatcctttc
      961 tccccaaact ccacgccgct gtcgtaaggt gtttttccgt cgttgaattt tactcccctc
     1021 aggtcgtgct ggtagcctcc ctgcaaatgg acgagttcgc caaaaactcc ttgccgcacc
     1081 atgttcaaca ccgccatcac atcgcgtcga tagcacacgt tttccagctg cattacctgg
     1141 gccttgtgtt tttcagctgc atgcaccaca tcccaatggt cttgcagcgt aatgcccagc
     1201 atcacttcgg tacccacata tttgatgccc ctctccagcg aatcaatgat catgggcttg
     1261 tgccattccc acggtgtggc aatgatcacc gcgtcaatgt cttttgcctc cagcagtttg
     1321 cggtaggcat agttatcgcc cttgtacact ttgggcatag gcttgccact ttgggtgatc
     1381 atgtccatgc tgtctttcag catccgctcg tctatatcgc aaatggatac caactgcaca
     1441 tcggcccggc gcagcagcag gtcgaggtga ttctggccac gcaggcccac tccaattatt
     1501 ccaacccgta ctttatccaa tccgggtgcg gcaaacaaag catcggggcg caaaagcatt
     1561 ccggcagaaa gcaaggcgga tgactgcaga aagtgacgac gattcactgg catagcggtt
     1621 gttttttgaa ggcatgaaaa ataaggacta aaaggataca tcaccggcca aaagcttgcc
     1681 tttatcttcg ccgacctatg aacgcaggta atgtttctat tgtgaaagcg gtggtgcacc
     1741 gggtaggcaa catgtcgcgg ggcgaaaaac tggtgctcag cgaaaatcag ctgacgctga
     1801 atgatgacca tgtgcgccaa atgctggcca aatattttct ccagcatttc aacgagcatg
     1861 agcaataccg ttttacccat gtgagcagcc tgggattgaa tgaggtgtac acctatgcga
     1921 aacacatttt ccaccagccc gacagtttta tggaggaaag caggcacctc gcacagctgc
     1981 tttaccaggt gagtacgcac agccgcatca aggaaggcga actgtacgtg gtgcaactgg
     2041 gcaacctgat gctggacaat gaagacatgg aagcgctggt gctggtaaag agcgaaagca
     2101 aagacacttt cctgaaactg ctgcagcacg gcaagagcct ggaggtggtt gcggaggaag
     2161 gcattaacct gggaaagcct gacaaggcat gtctcatttt gaaaacgcag gaagccgatg
     2221 gctttcgtgt ttgcgtgata gacaattcca acaaacagca ggatgcgcag tattgggtga
     2281 aagagttttt gcaaatagaa ccggtggccg acaactacca ccacaccaat gaagtactga
     2341 gcctttgcag gcagtttgtg acgcaggagt tgcccgaaca ttttgaagta accaaggggc
     2401 agcagattga tatgatgcaa cgcggccttg actacttcaa ggaaaaggaa cagttcaaca
     2461 tggaggagtt caccactgaa gtgattgcct acccggaaat ggtggaacag tttcaccagt
     2521 tcaaggacaa ctacgagaaa aacaggcagg tctccatcga cgattcattc gacatacacc
     2581 tgtccgctgt caacaaacaa agcaaggcct acaaaagcgt tttgaaactc gacaagaact
     2641 tccacattta tatccacggc cgccgc
//
LOCUS       DATIQF010000828         2455 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_165238,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000828 DATIQF010000000
VERSION     DATIQF010000828.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2455
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165238"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1113)
                     /gene="glyA"
                     /locus_tag="VLL95_14230"
     CDS             complement(<1..1113)
                     /gene="glyA"
                     /locus_tag="VLL95_14230"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: protein motif:HMM:NF000586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HSR40068.1"
                     /translation="MLQSLQLCTYICGKFNYIMALDPIFQLLDKELQRQRSGIELIAS
                     ENFTSLPVMQAMGSVATNKYAEGYPGKRYYGGCEVVDEIENMAIDRIKQVFKASWANV
                     QPHSGAQANASVFLACLKPGDKILGLDLSMGGHLTHGSPANFSGKIYQPLFYGVKKET
                     GLIDYEMLEEKALSEKPKMIIVGASAYSRDWDYARVRKVADEIGALVLADISHPAGLV
                     AKGFLNDPFEHCHIVTSTTHKTLRGPRGGVIMLRHDFDNPMGIKDPKGNIRSMSALLD
                     LAVFPGTQGGPLEHVIAAKAVAFGEILTDEFTAYQNQVQLNAQALAKCFVEKDYQLIS
                     GGTDNHLMLIDLRNKNITGKKAQETLDLAHITLNKNS"
     gene            1233..1664
                     /locus_tag="VLL95_14235"
     CDS             1233..1664
                     /locus_tag="VLL95_14235"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR40069.1"
                     /translation="MALMQIEHGSPRYQQMVQLRDEVLRKPLGLSFTPEQLEAEKNDI
                     LIGAFEDERILGCCILTPVDKETVKLRQMAVARKQQHKGIGWSIMQFAENLARDKGFK
                     VVTMNARDTAIGFYQKMGYQVVGDEFIEVTVPHHVMQKRLR"
     gene            complement(1689..2171)
                     /locus_tag="VLL95_14240"
     CDS             complement(1689..2171)
                     /locus_tag="VLL95_14240"
                     /inference="COORDINATES: protein motif:HMM:NF025675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcxB family protein"
                     /protein_id="HSR40070.1"
                     /translation="MQIKIEYDRQKVLQALRYHFISRNEVKVLLILVNVFAVFAAVLY
                     AFKMVRPGPFLVSSLLWFLLMLTFWFWLPRMIYNRSATFKEHIDFTFRGDDILLETSR
                     GHTTWAYNKFMYYIESPFFFHLYMSDKMFFLIPKDACVGEADTVKVRKLLDEKVGRKK
                     "
     gene            complement(2229..>2455)
                     /locus_tag="VLL95_14245"
     CDS             complement(2229..>2455)
                     /locus_tag="VLL95_14245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40071.1"
                     /translation="ITCSPLTSGTHPFGGKEANNPWRVVGVDKLQNFGRISISGPRSS
                     RTLKVEFAGLKGEKLAEWQVGEQELRVKTK"
BASE COUNT          621 a          613 c          578 g          643 t
ORIGIN      
        1 gctgttcttg ttcaaggtaa tatgggcaag atccaatgtc tcctgtgcct ttttcccggt
       61 gatgttctta ttgcgcaggt caatcagcat caggtggttg tcggtgccgc cactgataag
      121 ttgatagtct ttttcaacaa aacattttgc cagtgcctgc gcattcaact gtacttgatt
      181 ttgataagcg gtgaattcgt cagtcagtat ttcaccaaag gccaccgctt tggcagctat
      241 cacatgctcc agtggtccgc cctgtgtgcc agggaacacc gccaggtcaa gcagggcact
      301 catggaccgg atattgcctt tcggatcttt aatacccatc gggttgtcaa aatcgtggcg
      361 cagcataatc acgccaccgc ggggaccacg cagtgttttg tgggtggtgc tggtaacgat
      421 gtggcaatgc tcgaaaggat cattcaggaa tcctttggct accaaacctg cagggtgact
      481 gatgtctgcc aataccaggg caccaatttc atcggccact ttgcgcaccc gtgcatagtc
      541 ccaatcgcgg ctgtaagcac tggcacccac aatgatcatt ttgggctttt cgctcagcgc
      601 cttttcttcc agcatttcat aatcaatgag gccagtttcc tttttaacgc cataaaaaag
      661 tggctggtag atcttgccac tgaaattggc agggctgcca tgcgtaaggt ggccgcccat
      721 gctgaggtca agccccagga ttttgtcgcc aggcttcagg caagccaaaa acacggaagc
      781 attggcctgc gccccactgt gaggctgcac attggcccag ctggctttga acacctgctt
      841 gatgcgatcg atggccatgt tctctatctc atccaccacc tcgcagccgc cgtagtaacg
      901 cttaccggga tacccttcgg catacttatt ggtagccacg ctgcccatgg cctgcattac
      961 aggaaggctg gtaaaattct cgctggcaat caattctatg ccggaacgct gacgctgcag
     1021 ttctttgtca agtagttgaa agatgggatc caaagccatg atatagttga atttgccgca
     1081 aatataggtg catagctgca ggctttgcag cacgaagcag gcatgtgtac aatgtagcgg
     1141 gataattcaa aaaccactgt aattcaacac attgaaccct aacaaatcgg gtttttattt
     1201 ggctttttcg acatacaacc ctattttagg ctatggcgct gatgcagata gaacacggat
     1261 caccccggta ccagcaaatg gtacagcttc gtgatgaggt tttgcgcaag cctcttgggc
     1321 tgagtttcac ccctgaacag ttggaagcag aaaagaatga tatccttatc ggcgcctttg
     1381 aagatgagcg cattttaggt tgttgtattc ttacccctgt tgacaaagaa accgtgaaac
     1441 tgcgccaaat ggctgtagcc aggaaacagc agcacaaagg catcggctgg agcatcatgc
     1501 aatttgccga aaacctggcc cgcgacaagg gctttaaggt ggtaaccatg aatgcccgcg
     1561 ataccgccat cggcttttac cagaaaatgg gataccaggt ggttggcgat gaattcattg
     1621 aagtgaccgt gccgcaccat gtgatgcaaa aaaggctgag atgagcaaga ttgctttcta
     1681 ccctttcctt actttttcct tcccaccttt tcgtccagca gctttctcac tttcacggtg
     1741 tctgcctctc ccacgcatgc atctttcgga atgaggaaga acatcttatc agacatgtac
     1801 aaatgaaaga agaaggggct ttctatgtaa tacatgaatt tattgtatgc ccaggtagta
     1861 tgcccccggc tcgtttccag cagaatatca tctcccctga aagtgaaatc gatgtgttct
     1921 ttaaaagtgg cgcttcggtt gtaaatcatt cggggcaacc aaaaccaaaa ggtgagcatc
     1981 agtaagaacc acaacagtga actcaccaaa aacggccccg ggcgcaccat cttaaaagca
     2041 tacaggactg ccgcgaatac ggcaaacaca tttaccagta tcaacaacac ttttacctcg
     2101 ttgcgggaaa tgaaatgata tcgaagtgcc tgcagcacct tctgcctgtc gtattcaatt
     2161 tttatttgca tgctccctga ttacaatgtg taggaaaaaa gtatgagtca aagaatgaag
     2221 gttgcattct attttgtttt gactcgaagt tcttgttcgc ccacctgcca ttcagccaat
     2281 ttctcccctt tcagtccggc gaattccact ttcagagtac ggctgctgcg gggtccagaa
     2341 attgaaatac gaccgaagtt ttgcagtttg tctacaccca ctacccgcca ggggttattg
     2401 gcttctttgc ctccaaaagg atgggtaccg ctggtgagtg gagaacaagt gatat
//
LOCUS       DATIQF010000829         1623 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_73956, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000829 DATIQF010000000
VERSION     DATIQF010000829.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73956"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..735)
                     /locus_tag="VLL95_14250"
     CDS             complement(<1..735)
                     /locus_tag="VLL95_14250"
                     /inference="COORDINATES: protein motif:HMM:NF026199.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidC/Oxa1 family insertase periplasmic-domain
                     containing protein"
                     /protein_id="HSR40072.1"
                     /translation="MGFDRNTIIGFSLLAVLFMGYFWYVSSNQKAAMDLKKRQEDSIA
                     ALRPKVDSAQWRADSARMAQQRDSVSAGDFAASANGVVQETVLENELLKATFSNRGGW
                     LKQVELKKFTGPDGKPAVMGGTHEEYFGYSVNTQAGQSTESAKLFFTSPGVQKNADGS
                     QTITYQINGGSKSLTHQFVIKPNDYRIYASIALTGASQLVSNQTLNLLWQTKVRNQQK
                     DVAYEKTQTKLVYHTEGEYDYATAVTG"
     gene            complement(876..>1623)
                     /locus_tag="VLL95_14255"
     CDS             complement(876..>1623)
                     /locus_tag="VLL95_14255"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF003792.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HSR40073.1"
                     /translation="QDAYKSILEAFVHAGAVNECKVNVVNVHSEHLTPENAPEKLGHL
                     DGLLVAPGFGQRGIEGKIAAIKYARETGLPFFGICLGMQMSVIEFGRHVLGLKNAHST
                     EMDLNSEDAVIDMMEEQKKITEMGGTMRLGAYPCTIKEGTLAHRIYHHTHISERHRHR
                     WEFNSKYAEAYEKAGMVLSGYNPETGLVEIVELPSHPFFIGVQYHPELKSTVEAPAPL
                     FVSFVEAAKNFADNKSGNKNISALKKSELI"
BASE COUNT          341 a          451 c          413 g          418 t
ORIGIN      
        1 accggttact gccgtagcat aatcgtattc accctcagtg tggtaaacca gcttggtctg
       61 tgtcttttca tacgccacgt ccttctgctg gttgcgcacc ttggtttgcc acagcaggtt
      121 gagcgtttgg ttgctcacca actggctggc accggtcagc gctatgctgg cgtaaatgcg
      181 gtagtcattg ggcttgatca cgaattggtg cgtgaggctc ttggagccgc cattgatctg
      241 gtaagtgatg gtctggctgc cgtcagcgtt cttttgcacg ccggggctgg taaaaaacaa
      301 cttggcagac tcggttgact gaccggcctg tgtattgaca ctgtacccga aatattcttc
      361 atgggtacca cccatcaccg ccggtttgcc atcagggccg gtgaattttt tcaactctac
      421 ctgcttcagc catccacccc tgttgctaaa agtggctttc aacaattcgt tctccagcac
      481 ggtttcctgc accacgccgt tggcgctggc cgcaaaatcg cccgccgaaa cggaatccct
      541 ttgctgggcc atgcgggcac tgtcggccct ccactgggcg gaatctactt tggggcgaag
      601 ggcagctatg ctgtcttcct ggcgcttctt caaatccatc gccgctttct ggttgctgct
      661 cacataccag aagtagccca taaacaacac cgccaaaagc gaaaagccaa tgatggtatt
      721 cctgtcaaat cccatagttc gattttaaaa ttgagcggca aaggtaacgg ctgagggtta
      781 atatggccga taattacagg gccggccacc accgggtacc aaaaacaaca gccggccttc
      841 caaaagccgg ctgttccagg taaatcacaa agcctttaga tcagttcgct tttcttgagc
      901 gccgaaatat tcttgttccc cgatttattg tcggcgaagt tcttggcagc ctccacaaag
      961 ctcacgaaca gcggggccgg ggcctctacg gtactcttca gttcggggtg atactgcacg
     1021 ccaatgaaga aaggatggct gggcaattcc acaatttcca ccaggccagt ttcggggttg
     1081 tagccgctca gtaccatgcc ggccttttca taggcttcgg cgtatttgct gttgaattcc
     1141 caacggtgac ggtggcgttc gctgatatgg gtatggtggt aaatgcgatg cgccagcgtg
     1201 ccttctttga tggtgcaggg ataagcgccc aaacgcatgg tgccacccat ttcggtgatc
     1261 tttttctgct cttccatcat atcgatcacc gcgtcttcgg agttgaggtc catctcggtg
     1321 ctgtgggcat ttttcaaccc cagcacatgc cggccaaatt caatgaccga catctgcatg
     1381 ccgaggcaaa taccaaagaa aggcagcccc gtttcacggg catatttaat ggcagcgatc
     1441 ttgccttcaa tgcctctttg tccaaaaccc ggtgccacca gcaatccgtc gaggtgaccc
     1501 agtttttcag gtgcgttttc aggcgtcagg tgctcactat gcacgttcac tacatttacc
     1561 ttgcactcgt ttacagcccc ggcgtgcaca aaggcttcga ggatggattt gtaggcatcc
     1621 tgc
//
LOCUS       DATIQF010000830         6922 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_286605,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000830 DATIQF010000000
VERSION     DATIQF010000830.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6922
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286605"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..779)
                     /locus_tag="VLL95_14260"
     CDS             complement(<1..779)
                     /locus_tag="VLL95_14260"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HSR40074.1"
                     /translation="MPGFELWGAEERKEVNDVLETGVLMRYGFDGPRKGMWKAKELEA
                     AICQTFGSKYAQLTSSGTAALTTAMSALGIGYGDEVIMPAFTFVASFESVLSVGAIPV
                     LVEVDRSLTLDPEAVKAAITPRTKCIMPVHMCGSMAHMSELKAICKANNLLLLEDACQ
                     SIGGSYKGQYLGTIGHAGTFSFDYVKTITCGEGGVVMTNDADIFDKCDGYTDHGHDHK
                     GVDRGADLHTFIGYNFRISELNAAVGLAQIKKLSTILEIQRR"
     gene            935..1462
                     /locus_tag="VLL95_14265"
     CDS             935..1462
                     /locus_tag="VLL95_14265"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HSR40075.1"
                     /translation="MGKIVLYIATSIDGRIADANGGVEFLDGFGSAEEDYGYTQFIKT
                     IGTVVMGSATYEKLLSFSYWYEGMDHVIFSSRELHVPEGRSIRQLSGDPRELAAELRN
                     RDKDAWLVGGAALLSSFLEHKLVDTMIITVVPRYLGSGISLWQDGNPGQSKWTLTDCE
                     KWDDGVVQLQYAFQG"
     gene            1605..2393
                     /locus_tag="VLL95_14270"
     CDS             1605..2393
                     /locus_tag="VLL95_14270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40076.1"
                     /translation="MKKMLVIAVWMVWLGLGNLHAQTSQGSIGYNMMLPVGDMKTGWS
                     SAHGMQFEYLFGLPKTPALKIGFEGQFSFYGYRSETQDYLIFNGILASSEVSFSSYIM
                     NFGLKALVEPPKKMPVKPYASVQFGVLGMMSDLTLDQFSHSDYYYCSSPNSKTLIDDY
                     DWYASGGAGLKFDLSPKKKPGRDFIDLYCGYIGGGTLKYANMNRMYAVPVSSDKGRES
                     IKVVFINTLTQEQQEMNVADVYRHPISMLQLQLKWTMAFGGKQK"
     gene            complement(2472..3707)
                     /locus_tag="VLL95_14275"
     CDS             complement(2472..3707)
                     /locus_tag="VLL95_14275"
                     /inference="COORDINATES: protein motif:HMM:NF014675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 10 glycosylhydrolase"
                     /protein_id="HSR40077.1"
                     /translation="MNQFLSRRLLIPAFLLLFFFASNAQQAEFRAAWIATVENIDWPS
                     KKGLPVEQQKAEFRSLLDMHKKNGLNAIVAQIRPVADAFYQSELEPWSEYLTGTQGKA
                     PVPFYDPLHFMIEETHKRGMEFHAWINPYRAVFNTARSSVASNHSTKLHPEWFVDYGD
                     ASKTTRYFNPGIPEAQDFVTKVIRDIVKRYDVDGIHFDDYFYPYRIPGKDFPDARAYQ
                     QYGKGMNKDQWRRSNVDSIILKLNRAIKSEKPWVKFGISPFGVWRNKSQDPLGSETQA
                     GQTNYDDLYADIILWLKNGWIDYVVPQLYWEIGHDKADYTTLIKWWSKHTYGKHCYIG
                     LAPYRANSNSAWRDKSQLPNQIQMSRNVPNINGQVYFSSKSFIGNPNGWNDSLQANYY
                     KTPVPTPEMPWLPKKPTGK"
     gene            complement(3834..4322)
                     /locus_tag="VLL95_14280"
     CDS             complement(3834..4322)
                     /locus_tag="VLL95_14280"
                     /inference="COORDINATES: protein motif:HMM:NF013231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HSR40078.1"
                     /translation="MGIDLSLRKHTQVNEAEKATTNLILAHNWVMDQFKYELERFNIT
                     AQQFNILRILKSEAKPLSTMQIRDRMLDKMSDTSRIVDRLVAKDLVSKSVSSLDKRLV
                     DVIITQKGLALLERLDAEGITMEKSLSSLSVAEVNTLNELLSKIRAAESQEEPQMLKP
                     IM"
     gene            complement(4578..5606)
                     /locus_tag="VLL95_14285"
     CDS             complement(4578..5606)
                     /locus_tag="VLL95_14285"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HSR40079.1"
                     /translation="MYFNWNDTVNLASKLTWRRIMNAIKVWSSYQLSKLRRKPVQWGY
                     PISISFEPTTSCNLRCPECPSGLREFTRPTGMLQQDFFRQTIDDIYRELLYLVFYFQG
                     EPYLNPHFLEMVRYAHEKGIYTATSTNAHYLSDDKARQTVESGLDRLIISIDGTTQDV
                     YQSYRVGGKLDKVLEGARNIVKWKKELKSKTPFVFFQFLVVKPNEHQIEEIKKIASEI
                     GVDQVRFKTAQVYDYANDPNQLIPTIDKYSRYRRDKNGNMQIKSGLQNHCWRLWSGNV
                     ITWDGLVVPCCFDKDAMHQLGNLKMQSFKQAWHNDNYRQFRNELMAGRKNIDICANCS
                     EGLKVWEE"
     gene            5778..6596
                     /locus_tag="VLL95_14290"
     CDS             5778..6596
                     /locus_tag="VLL95_14290"
                     /inference="COORDINATES: protein motif:HMM:NF013357.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003796 - lysozyme activity [Evidence
                     IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA];
                     GO_process: GO:0016998 - cell wall macromolecule catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GH25 family lysozyme"
                     /protein_id="HSR40080.1"
                     /translation="MAKRKSNRVYFWFSVLMLSFIGGLLIYFLADQWSAGNRRPGHID
                     DAENTFSSYPGFGIWIPDDYEVHGIDVSKYQKRVNWKLVRQMKDRGLQLQFAFMKATE
                     GTDIIDPQFARNWKKAKEAGMVVGAYHFFRQSSGGHEQALFFMRQVNLQVGDLPPVLD
                     VETFRGDGVEQFLDEVETWLKVVENRYGQKPIIYTNAGFYNQYLAGRFDNYPLWVAHY
                     QNKNSPRVNRSWHFWQHNEGGRVNGIRSLVDFNVFNGTLKDFNALLIPKKLTAN"
     gene            6702..>6922
                     /locus_tag="VLL95_14295"
     CDS             6702..>6922
                     /locus_tag="VLL95_14295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40081.1"
                     /translation="MRNRIVMLLVFTSLSAFVWAQDETALLKTQGSAARNYLPEAVVN
                     LLPNGLHQKVDKWENAGHKGRIITGWYANG"
BASE COUNT         1762 a         1490 c         1727 g         1943 t
ORIGIN      
        1 cggcgttgta tttccaaaat ggttgacagc tttttgattt gtgccagtcc cacagcggca
       61 ttgagttcgc tgatgcggaa gttgtatcca atgaatgtat gcagatctgc gccacggtca
      121 acgcctttat ggtcgtgccc atgatctgta tagccatcac acttatcaaa gatgtcggca
      181 tcattggtca tcaccacgcc gccttcgccg caggtaatgg tctttacata atcgaaactg
      241 aatgtgcctg catggccaat ggttcccaaa tactgtcctt tgtaagatcc gccaatgctt
      301 tggcaggcat cttcgagcag cagcaggttg ttggctttac aaatggcttt caactcactc
      361 atgtgcgcca tgctgccaca catgtgtaca ggcataatgc acttggtgcg tggggtaatg
      421 gccgctttta ctgcttccgg atccagcgtc aggctgcggt ctacctctac gagtacagga
      481 atggcgccta cactcagcac tgattcaaaa ctggccacga aagtgaaagc aggcatgatg
      541 acttcgtcgc cataaccaat gcccaatgca ctcatggctg tggtaagtgc ggcagttccg
      601 ctgctggtga gttgggcata tttgctgcca aaagtctggc agatggccgc ttccagttct
      661 ttggccttcc acatgccttt tcgagggcca tcaaaaccat agcgcatcag tacgccggtt
      721 tccaatacgt cgttcacttc tttgcgttct tcggcgcccc ataattcaaa gcctggcata
      781 aataactgct ggttgggatg atgaaattga agttgtgggc acaaaagtag ccattgctgc
      841 ctaaatgtat cagcaaggcg acaccggatg gtgatgatcg tcataggcaa ttttttcatt
      901 tatgctgaac ttcacaaatc atcaagcctt tgatatggga aagatcgtac tgtacatcgc
      961 cacttctatt gacgggcgaa tagctgatgc caacgggggt gtggaattcc tggatggatt
     1021 tgggagtgct gaggaagatt atggatacac gcagttcata aaaaccattg gtacggtggt
     1081 tatgggttcg gccacttacg aaaaattgct cagtttcagc tattggtatg agggcatgga
     1141 tcatgtgatc ttcagcagcc gcgaattgca tgtgccagaa ggccgaagta tcaggcaact
     1201 aagcggcgat cctcgtgaat tggcggctga attgcgcaac agggataaag acgcctggct
     1261 cgtaggagga gcagctttgt tgtccagttt cctggaacac aaactggtag acaccatgat
     1321 catcactgta gttcccaggt atttgggatc aggcatcagt ctctggcagg atggaaatcc
     1381 cgggcaaagc aaatggactc tgacggactg cgaaaagtgg gacgatgggg tggtacaact
     1441 tcaatatgct ttccagggtt gagcctatac cgttattgtt accaacatga attcaggcat
     1501 cgtttaagcc agtagtattt cgtaacttat gtatgcagat gtagcatggt tgcacaggca
     1561 accggttgtg atggctgtta ttagttcatt gaaaagctgg tgttatgaaa aagatgctgg
     1621 ttattgcagt atggatggtt tggctgggac ttggcaacct gcacgcacaa accagccagg
     1681 ggagtattgg ttacaatatg atgctgccag tgggtgacat gaaaacaggt tggtcatcag
     1741 ctcatggcat gcaattcgaa tacctgtttg gtcttcccaa aacccctgca ttaaaaatag
     1801 gcttcgaagg ccagttcagt ttttatggct accgttcgga aacacaagat tacctgatct
     1861 ttaatggcat tcttgcttct tcggaagttt cgttcagcag ctacatcatg aactttgggt
     1921 tgaaggcgtt ggtggagcct cccaaaaaaa tgcctgtgaa gccttatgct tcggttcagt
     1981 ttggggtgtt gggcatgatg agcgatctca ccctcgatca attttcacac agcgattact
     2041 actactgttc ttcgcccaat tccaaaaccc tgattgatga ttatgattgg tatgccagtg
     2101 gcggcgccgg gctgaaattt gacctcagtc ctaagaaaaa gcccgggcgg gatttcatcg
     2161 atttgtattg cggctatata ggagggggaa cgcttaaata tgccaacatg aaccgtatgt
     2221 atgccgtgcc cgtatcatct gataaaggga gagagagcat taaagtggta ttcatcaaca
     2281 ccctaaccca ggaacagcag gaaatgaatg tggccgatgt ataccgccat cccatcagca
     2341 tgctgcaact gcagctcaaa tggacaatgg cttttggtgg taagcagaaa tagagatgga
     2401 tgaaatattc atacaagcaa aacgagcctg ttttaacagg ctcgttttgt atagtaagga
     2461 atcaagtttt gttatttacc ggtaggcttt ttgggcagcc agggcatttc gggggtaggt
     2521 accggggtct tgtagtaatt agcctgcagg ctgtcattcc agccgttggg gtttccaata
     2581 aaactcttgc tgctgaaata tacctggcca ttgatgttag gtacatttcg ggacatctga
     2641 atctggttgg gcagttgact tttgtcgcgc caggcactat tactgttggc acggtaagga
     2701 gctaacccta tatagcagtg ttttccgtat gtgtgcttac tccaccattt gatgagtgtg
     2761 gtgtagtctg ctttgtcatg gcctatttcc cagtaaagtt ggggcaccac ataatcgatc
     2821 cagccatttt tcaaccaaag gatgatgtca gcatacaaat cgtcgtaatt ggtttgaccg
     2881 gcctgcgttt cgcttcccag cggatcctgg ctcttgttgc gccaaactcc aaaaggacta
     2941 atgccgaatt tcacccaggg cttttctgat ttgatggccc tgttgagttt caaaatgatg
     3001 ctgtccacat tgcttcggcg ccactggtct ttgttcatgc ctttgccgta ttgctggtat
     3061 gctctggcat ccggaaagtc ttttccgggg atgcggtacg gatagaaata atcatcgaaa
     3121 tgaataccgt ccacatcgta gcgctttacg atgtcgcgaa ttactttggt tacaaaatcc
     3181 tgtgcctcag gaatgccagg attgaaatag cgggtggtct tgctggcatc gccatagtct
     3241 acaaaccatt cagggtgaag tttggtagag tggttagatg ccacgctgct gcgtgctgta
     3301 ttgaatacgg cacggtaggg attgatccag gcatgaaatt ccatgccgcg tttgtgggtt
     3361 tcctcaatca tgaaatgcaa tggatcataa aacggtacgg gtgctttgcc ctgcgtgccg
     3421 gtgaggtatt cgctccaggg ttccagttcg ctttgataaa aggcgtcagc taccggacgt
     3481 atttgggcca caatggcgtt cagtccattt ttcttgtgca tatccaacag gcttctgaat
     3541 tcagctttct gctgctcaac gggaaggcct tttttgctgg gccaatcaat gttttcaacc
     3601 gttgctatcc aggcagccct gaattcagcc tgttgggcat tggaggcaaa aaagaaaaga
     3661 agcaggaaag cgggtatcag taaacggcgg cttaaaaatt gattcatttg attgaaaacc
     3721 tgttggtaat gaattggttc taaaaaaata atgaatgcca aagcgaatat aaggcaataa
     3781 aaaaggctgc tttctgaagc agccttgtac gaagaatttt tagcaattca gttttacatg
     3841 ataggcttga gcatttgggg ctcttcctgg ctttcagcag cacggatttt ggaaaggagt
     3901 tcattcagtg tattgacttc cgcaactgaa agagaggaaa gagacttctc cattgtaatg
     3961 ccttctgcgt caaggcgttc caacaaagcc aggcctttct gcgtgatgat cacgtccacc
     4021 agccttttgt caagggatga aactgatttg cttaccaggt ctttggcaac cagcctgtca
     4081 acaatgcggc ttgtatcgct cattttatcc agcatgcggt cgcgaatctg catagtgctc
     4141 aagggttttg cctcgctttt caggatgcgc aaaatgttga actgctgagc ggtaatattg
     4201 aatcgttcca attcatactt gaattggtcc ataacccaat tgtgcgccaa aatcaaattg
     4261 gtggtagctt tttctgcttc gtttacttgc gtatgcttac gcaatgacaa atcaatgccc
     4321 ataagtgcac tggtttaagg gttaaaaggg gggttcggga ctacgaagat attgatataa
     4381 ggcagaattt ctctatatga agccgttttt tccatgtttg aacagatttt ctacattgaa
     4441 aaaaacaata atggtgccat aataatgtca aaacacagat ttcacggggc tttcaggaaa
     4501 tcttaattgg taaaaaaaat taaaatgtgg ataaataatt atcattcaga cagatttcga
     4561 accgttttcc ggaggggtta ttcctcccaa accttcaaac cttcactgca gttggcacag
     4621 atatcaatgt ttttccgacc ggccatcagt tcgttccgga attggcgata attgtcattg
     4681 tgccaggctt gtttaaagct ttgcatctta agattgccca attggtgcat ggcatccttg
     4741 tcgaaacaac agggtaccac cagcccgtcc caggtaatga cattaccgct ccagaggcgc
     4801 cagcaatggt tctggaggcc actttttatt tgcatgttgc cattcttgtc gcggcggtag
     4861 cggctgtatt tgtcgatggt gggaatcagt tggttgggat catttgcgta atcgtaaacc
     4921 tgggcggtct tgaagcgcac ctggtccacg ccaatttcac tggctatttt cttgatttcc
     4981 tcaatttggt gctcatttgg cttcactact aaaaactgga agaatacaaa cggggttttg
     5041 cttttcaatt cctttttcca cttcacaatg ttcctggcac cctccagtac cttatccagt
     5101 tttccgccaa cccggtagct ctggtaaaca tcctgtgtgg ttccgtcaat ggagatgatg
     5161 agtcggtcga ggccactttc taccgtttga cgggctttgt catcagagag gtagtgcgca
     5221 ttggtgctgg tagcggtata aatacccttc tcgtgggcgt aacggaccat ctccaaaaag
     5281 tgcgggttca ggtaaggctc cccctggaaa taaaagacca ggtaaagcaa ttcgcggtaa
     5341 atatcatcaa tggtctgcct gaaaaaatct tgctgcagca tgccggtagg cctggtaaac
     5401 tcacgaagac cactggggca ctcggggcag cgaagattgc agctggtggt aggctcaaat
     5461 gaaatactga tgggataccc ccattgtacc ggtttgcgcc tcagtttgct cagctgataa
     5521 ctcgaccata ctttgatcgc attcatgata cgtctccagg taagctttga ggcgaggttg
     5581 acggtatcat tccaattaaa atacaatagt gatctttttg ctgcgggtaa aaatagccac
     5641 atgacggcat agcagcctta gtgatatggt tagttcactt tattttccgt actgcgaaag
     5701 atttttgggc aggctgcagt ttcattgcag gctcacggtt caattttgtc gggcaaatag
     5761 cggttcgatt atcctccatg gcaaaaagaa aaagcaacag ggtctatttc tggttttcgg
     5821 tgttaatgct gtcattcatc ggcggactcc tgatatattt cctggccgac cagtggagcg
     5881 caggcaatcg gcggcctggc catattgatg atgctgaaaa caccttttcc agttatccgg
     5941 gttttggcat ctggataccc gatgactatg aagtgcacgg aattgacgtg agcaaatacc
     6001 aaaagcgtgt caactggaaa ctggttcgcc aaatgaagga ccgtggtttg cagttgcagt
     6061 ttgcttttat gaaggccact gaaggcacag atattattga cccgcaattt gcccgaaatt
     6121 ggaaaaaggc gaaagaagct ggtatggtgg tgggtgccta tcattttttc aggcaatcat
     6181 cgggtggtca tgaacaagca ctgtttttca tgaggcaggt gaatttgcag gttggtgatt
     6241 tgccacccgt actggatgta gaaacttttc gcggagacgg agtagagcaa ttcctggatg
     6301 aagtggaaac ctggctgaaa gtagtagaga acaggtacgg gcagaaaccg attatttata
     6361 cgaacgccgg cttctacaat caatacctgg ccggccgttt tgataactac ccgttatggg
     6421 tggcacatta tcaaaacaag aacagtccac gtgtaaacag gtcatggcat ttttggcaac
     6481 acaatgaggg cggcagggta aatggcatac gttcgctggt agattttaat gtattcaatg
     6541 gaaccctcaa ggactttaat gctttgctga ttccgaaaaa attaacagcg aactgataat
     6601 tgttatccaa ttatggcggg ttgacaaatt acttttgcat agacacacgg atttgaacat
     6661 ttgggattat gcgttgtcat tcattttaaa gatagcctgc catgcgtaac agaatagtta
     6721 tgctccttgt ctttacatcc ttgtcagctt ttgtttgggc acaagatgaa acagccttgt
     6781 tgaagacaca aggttctgct gcaaggaatt atttgccaga agcagttgtc aatttgctcc
     6841 cgaatggtct gcatcagaag gtggacaagt gggaaaatgc cggccacaaa ggacgcatca
     6901 tcaccggctg gtatgccaat gg
//
LOCUS       DATIQF010000831         2590 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_73984, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000831 DATIQF010000000
VERSION     DATIQF010000831.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2590
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73984"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2210
                     /locus_tag="VLL95_14300"
     CDS             <1..2210
                     /locus_tag="VLL95_14300"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HSR40082.1"
                     /translation="LQSRTKRIITAKPAAKKTTPKAKSSVNDGTPPSSKVMKTLHYKA
                     EQVIDFAWAADKRFIVKYDTVMLTSKPVEVWNFFLQEDEERWKNSMQFSKRALHFYSC
                     QLGDYPYPQMSVVASPGSEADGMEYPMFTLLNSKLYESKWLDIITAHEIGHNWFQASI
                     ATNERTHAWMDEGMNTYIEQQYDEAFYGKPGTESKKLTLDGISDNIEASILQYLYSTR
                     QDVPMESMADTVLPAVYYPIAYNKTADWMRLLENKLGKEKMQALLKQYYAEWKFKHPA
                     PEDFLQLAERISNQSLQPEATILHQKGPVTAWGKRQTSIAGFFSLANTDKKKYISLAP
                     AIGYNNYDKFQIGAVIHNYNIPANPFQFVLTPMLGTGSKQPIGYGRFGYHWYPAGKTF
                     YKAELYAGLAKFTTNQGVGEDGNSIPTGFLKFSPGVMLEWKKRNSLSTLQRILDFRTF
                     IISEQQLKFASPPPPGDTVFYAERNGSATTIIPQLTMSWIDNRKLHPYSIVAGVQQVK
                     DIVRLTFTGNYFLNYDKSGKGISARLFAGKIFYTREKTTQVRSDNSRYHFTMHGPNGQ
                     QDYTYSNAFMERNQSVQLAGRQIMMRDGGFKYRSDFSSVVPGLNSSGADFFDDWMLTL
                     NTYFDIPDKINPLTMLPFKTRLQLFADVGTSASPWKTGSTLPRFLYSVGFHLPVFKFL
                     HLYYPIIQSSAFKEPNSVNDPYREGGPKWWQEKLTFSINFEDLKPQPGGFKLF"
     gene            2212..>2590
                     /locus_tag="VLL95_14305"
     CDS             2212..>2590
                     /locus_tag="VLL95_14305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40083.1"
                     /translation="MHAGSLHINYVAHQDIDKAKWDATIEQSPNGLIYASSAFLDNMS
                     PGWDALVAGDYDFIFPVTWRSKMGIKYVCQPAFTQQLGMFSKKETSAEVLPDFLIRLS
                     TRFRLIEIFLNYQNVMGDNVAHHN"
BASE COUNT          757 a          656 c          578 g          599 t
ORIGIN      
        1 ggctgcagtc gcgtacaaaa aggattatca ctgctaaacc ggcagcaaaa aaaactactc
       61 ctaaagccaa atcatctgtt aacgatggta cacctccttc atccaaagtg atgaagacgc
      121 tgcactacaa agcggagcag gtgatcgact ttgcatgggc cgctgataaa aggttcatag
      181 tgaagtatga tactgttatg ctgaccagta agccagtgga agtatggaac ttctttttac
      241 aggaagatga ggagcggtgg aagaacagca tgcagttctc aaaaagagcg ctgcatttct
      301 acagctgcca attgggcgat tacccttacc cccagatgtc agtagtagcc tcgccgggca
      361 gcgaagctga tggcatggaa tatcccatgt tcaccctgct caattccaaa ctttacgaat
      421 caaaatggct cgatattatt acggcccatg aaattggaca caactggttc caggcaagca
      481 tcgccaccaa tgaaagaaca catgcatgga tggatgaagg catgaatacc tacatcgagc
      541 aacaatatga tgaagctttt tatggtaagc ccggcactga aagcaaaaag ctaacgctgg
      601 acggaatttc ggataacata gaggcctcaa tcctgcaata cctctactcc acccggcagg
      661 atgtgcccat ggaatcgatg gcagacacgg tattgccagc agtgtattat cccattgcat
      721 acaacaagac tgccgactgg atgcgattgc tggaaaacaa attgggcaaa gaaaaaatgc
      781 aggcactgct gaagcagtac tatgcggaat ggaaattcaa acacccggca cctgaagact
      841 ttctgcaact ggcagaacgc atcagcaatc aatcgctgca gccagaggca acgatccttc
      901 atcaaaaagg accggtgaca gcctggggca aacgccaaac ttccatcgcc ggctttttca
      961 gcctggccaa caccgataaa aagaaataca tctcgctggc gcctgctatt ggctacaaca
     1021 attacgacaa atttcaaata ggtgccgtca ttcacaacta caatatcccg gccaatcctt
     1081 tccaatttgt attgactcca atgttgggaa caggcagcaa acaacccatt ggctatggtc
     1141 gctttggcta tcactggtac ccggcaggca aaacatttta caaagcagaa ctgtatgctg
     1201 ggcttgccaa attcaccacc aaccagggag tgggtgaaga tggcaacagc atccccaccg
     1261 gctttttaaa gttttcgccg ggcgtgatgc tggaatggaa aaaacgaaat tcattgagca
     1321 ctttgcaacg catccttgat ttcagaacat tcatcatcag cgagcagcaa ctcaaattcg
     1381 caagtcctcc accgcccgga gacacagtat tctatgcaga acgaaatggc agcgccacta
     1441 ccatcattcc acaactgacc atgagttgga ttgacaatag aaaattgcat ccgtactcca
     1501 ttgtagccgg cgttcagcag gtgaaggaca ttgtaagact cacctttacc ggcaactatt
     1561 ttctcaacta cgacaaatca ggtaaaggca tttcggccag gctgtttgcc ggcaagatct
     1621 tttataccag ggaaaaaacc acccaggtac gcagtgacaa cagccgttat cattttacca
     1681 tgcatggccc caatggccaa caggattaca cctacagcaa tgccttcatg gaacgcaatc
     1741 aatcggtgca actggccggc aggcaaatca tgatgcgtga tggcggattc aagtaccgca
     1801 gcgatttcag cagcgtggtg ccggggttga acagcagtgg cgcagatttt ttcgacgact
     1861 ggatgcttac cctgaacacc tacttcgaca ttccagataa aataaatccg ctgacgatgc
     1921 ttcctttcaa aaccaggttg cagttgtttg ctgatgtagg cacctctgcc tctccctgga
     1981 aaaccggcag caccttgccc cgctttttgt acagtgtagg tttccatttg cccgttttca
     2041 aattccttca cctgtactac cctattattc aaagcagtgc gtttaaagaa cccaacagtg
     2101 tgaacgatcc ataccgcgaa ggcggtccta aatggtggca ggaaaaactc accttcagca
     2161 tcaattttga agacctgaaa ccgcagcccg gtggctttaa gcttttctga catgcatgcc
     2221 ggaagccttc atatcaatta tgttgcacac caggatattg acaaagcaaa atgggatgcc
     2281 actattgagc aatcacccaa cgggttgatc tatgccagca gcgcttttct tgataacatg
     2341 agtcccggtt gggacgcgtt ggtggcaggc gattacgact tcattttccc agtaacctgg
     2401 cggagtaaaa tgggcatcaa atatgtttgc cagcctgcat tcacccagca gcttggaatg
     2461 ttcagtaaaa aagaaaccag cgctgaggtc ctgcctgatt ttttgatcag gctctccaca
     2521 agattcaggc tcatcgagat tttcctcaac taccaaaatg taatgggtga taacgttgcc
     2581 catcacaact
//
LOCUS       DATIQF010000832         2406 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_58908, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000832 DATIQF010000000
VERSION     DATIQF010000832.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2406)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2406)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2406
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58908"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(149..1357)
                     /locus_tag="VLL95_14310"
                     /pseudo
     CDS             complement(149..1357)
                     /locus_tag="VLL95_14310"
                     /inference="COORDINATES: protein motif:HMM:NF013067.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
     gene            complement(1466..2344)
                     /gene="pta"
                     /locus_tag="VLL95_14315"
                     /pseudo
     CDS             complement(1466..2344)
                     /gene="pta"
                     /locus_tag="VLL95_14315"
                     /inference="COORDINATES: protein motif:HMM:NF013665.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016407 - acetyltransferase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
BASE COUNT          518 a          659 c          612 g          617 t
ORIGIN      
        1 acccttgtca ctttccgaac tcggcatttg cattgttctt tcagcgatag tatttcatgc
       61 agtggagtta gagaaattca tcaaacacct cagcagaaaa aggatgcaga aatcatgaca
      121 actttttccc tgctttgaaa agtctttttt agaatctatg cccctgcagc agtgcatagc
      181 attgctgggc gatctccagt tcttcgttgg tgggcacgat caggatcttc accggcgaat
      241 cgggcgtatt gatctcatgg ataccgctac cgccctgcag gttggcctgt gcgtcaaaat
      301 gaagaccgag gaattgcagg tggctgcaaa cccgttggcg catatcggta tcgttttcgc
      361 ccacacccgc agtgaaaatg atggcgtcca atccattcat ggcagccgcg taagcgccga
      421 tgtatttttt gatccggtaa gcgtacaact cgctggccag ttcggcatgt gcatcaccgg
      481 cggccaccgc tttgcgcaca tcccgcatat cgctgtagcc ggtcaggccc agcatgccgc
      541 tttctttgtt cagcaggttg ttcacggctt tgggttcata ccccaattgt tcgatcaggt
      601 ggaagataac agcggcatcg atatcgccac tgcgggtacc cattaccaaa ccacccaccg
      661 gccccagccc catggtcgtg tcaacggagc gcccggcatc cacagccgcc atgctgcagc
      721 cattgcccag gtgaatggtg atgagtttgg catcgggctt ctacaaccag gcagccgcct
      781 gcttactcac atagcgatgc gacgtgccat gaaagccata ggcacgaatg ccgtcttcct
      841 tgtacaattt ttcggggatg gcatagcgaa aagcacgggg cggcatggtt tggtgaaagg
      901 cggtatcaaa cacacccacc tggctcgcct tcggaaagat cttctccgcc acttcaatgc
      961 cgaggtagtt gggcgggttg tgcaatggag ccaatgagaa caattctttc actttggcct
     1021 tcacggcgtc ggtaatgatg gtggtggcag aaaacgcttc gccgccatgc accacgcggt
     1081 gacccaccgc tgcgatgtca tcaggattgc tgatgacgcc gatctccgca tccaccagta
     1141 atgcttctac ggcatagagg ccggcttcgt gatcgggcac ctgcattgtc tttttgtatt
     1201 gcttctcctc cccgttcaaa aacgttttgt gggtaatgct gccaccctcc aggccaatcc
     1261 tttccaccag cccgctgcaa ataggcttgt cggatggcat tttgaatagc tggtatttga
     1321 tggagctgct tccggaattg ataacgaaaa tgtgcatatg aaaagttcaa atgttcacga
     1381 gttcacgagt tgttgttggt tgttagttgc ttgatgtttg atggcttttt ctccaacaac
     1441 catcaaccag caacaaacaa ccgttctaaa ttccctgcgc ctgtatggcc gtaatgatca
     1501 ccgtattgta tacatcatcc acggtgcagc cgcggctgag gtcgttgatg ggtttgttca
     1561 aaccctgcag catagggcca atggccaggg cgccggtttc gcgttgaacg gctttgtaag
     1621 tgttgttgcc ggtattcaga tcggggaaga tcaaaacgct ggcctgccct gctacttcac
     1681 tgccgggcat tttttgcttg cccacgttgg gatccaccgc cgcgtcgtat tgaataggcc
     1741 cttccacttt gaggccggga cgcttttcct ttacgatcgc tgtcgcctgc cgcactttgt
     1801 caacatcggc gccttcgccc gaactgcccg atgaataaga cagcatggcc acccttggtt
     1861 ctatgccaaa ggcctggctg ctttcggccg atgaaatggc gatctccgcc agttgctcag
     1921 ccgtaggatc aggattgacc gcacaatcgc caaatacggc taccctgtcg ggcaggcaca
     1981 tgaagaatac agaagacaca gtggaaatgc cgggccttgt ttttacaaat tgcaatgccg
     2041 gtcggatggt gtgctgcgtg gtatgcacag caccgcttac cataccatcg gccatgccct
     2101 tctataccat catggtaccg aagtagctca catcggtcat catgtcgcgg gccatttctt
     2161 cgttcacgtt tttattcttc cgcagctcat acagtgtttg ccagaagtcc tcatagtatt
     2221 ccgattgggt cgggttgagc agggtgatct tcgacatatc aggattaagc cccagccgct
     2281 taaagctggc cagtatttca ccgggatcgc ccagtatggt gaggcgaacg atatcgttgt
     2341 tcaccagacg agccgccgct ttcaatatcc tgtcgtcgtt tccttcggac agtacaatat
     2401 gcttga
//
LOCUS       DATIQF010000833         1523 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_104161,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000833 DATIQF010000000
VERSION     DATIQF010000833.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104161"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1208)
                     /gene="glnS"
                     /locus_tag="VLL95_14320"
     CDS             complement(<1..1208)
                     /gene="glnS"
                     /locus_tag="VLL95_14320"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR00440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004819 - glutamine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HSR40084.1"
                     /translation="MSEEKSLNFIEEIIEADLAAGKHQSILTRFPPEPNGYLHIGHAK
                     SICLNFGLALKYGGKTNLRFDDTNPVTEETEYVESIKHDVQWLGFQWANEFYASDYFH
                     QLYAFAEKLIEKGMAYVDDSTSEEIAEQKGTPTTPGRRNQYADRSPAENLQLFRDMKA
                     GKFPDGSKVLRAKVDMASPNMLLRDPILYRIKHAHHHRTGDEWCLYPMYDFAHGQSDS
                     IEGITHSICTLEFVPHRALYDWLIEKLEIFPSKQYEFARLNMTYTVMSKRKLLQLVNE
                     GYVEGWDDPRMPTISGMRRRGYTPKSIRDFCDRIGVAKRENMIDLSLLEFFVREDLNK
                     TAQRRMAVLDPVKLEITNYPAGEFETLFSENNPEMPETGERLLHFGRELWIEREDFME
                     EPSKKWFRLAP"
BASE COUNT          348 a          395 c          386 g          394 t
ORIGIN      
        1 ggcgccaggc ggaaccactt ctttgaaggc tcttccataa agtcttcccg ctctatccac
       61 agttcgcggc caaaatgcaa cagccgctca ccggtctccg gcatttcagg attgttttca
      121 gagaacaggg tttcaaactc acccgccggg tagttggtaa tttcaagctt caccggatcg
      181 agtactgcca ttcggcgttg tgcggttttg ttcaggtctt cgcgaacgaa aaattcaagc
      241 aggctcaggt caatcatgtt ttcacgcttg gccacgccaa tgcgatcgca aaaatcacgg
      301 atggacttgg gtgtgtaacc acgcctgcgc atgccgctga tggttggcat gcgtggatca
      361 tcccagcctt ccacatatcc ttcattcacc aattgcagca gcttgcgctt gctcatcacc
      421 gtgtaggtca tgttcaggcg ggcaaactca tattgtttgc tgggaaatat ctcgagcttt
      481 tcaatcagcc aatcgtacaa agcccggtgt ggtacaaatt ccagcgtgca aatgctgtgg
      541 gttatgcctt caatgctatc gctctgccca tgcgcaaaat cgtacatcgg gtaaaggcac
      601 cattcgtcgc cggtacggtg atgatgggcg tgtttgatgc gatacaaaat cggatcacgc
      661 aacagcatgt tggggcttgc catatccact ttggctcgca gcactttgct gccatcagga
      721 aatttgcccg ctttcatgtc gcgaaacagc tgcaggtttt ctgcaggcga acgatcggca
      781 tattggttgc ggcgcccggg cgtagtgggc gttccttttt gctcagctat ttcttccgat
      841 gtgctgtcgt ctacataagc catgcctttc tcaatcagtt tttctgcgaa ggcatacaac
      901 tggtgaaaat agtcggaggc atagaattca ttggcccact gaaagcccag ccactgtaca
      961 tcgtgcttga tgctctccac atattccgtt tcttccgtca ccgggttggt atcatcaaac
     1021 cgaaggttgg ttttgccacc atacttcagc gccaggccaa agttgaggca aatgcttttg
     1081 gcatgcccaa tatggaggta gccattgggt tcgggcggaa aacgtgtgag gatggactgg
     1141 tgtttgcctg cagccaggtc tgcttcaata atctcctcaa taaaatttaa gctcttctct
     1201 tcgctcatat tgtctttttt aggaggccag ccgctgtgct gcaatgacgc ttcagtggcg
     1261 acctgcctgc cggcaggcag gcgctttgtt caacagtgta ctactatctt ttatttcaaa
     1321 aagtgcccaa aggtaactga aacaaaaaaa gcatccgaaa cgaatgcttt tgcggagcgg
     1381 aagacgggaa tcgaatgcag acgagctaaa gctgtctgca ccgagacatc cgcagcaggc
     1441 ggatcgtctc ggccagcgat tggagcggaa gacgggaatc gaacccgcga ccttcagttt
     1501 gggaaactga agctctaccc ctg
//
LOCUS       DATIQF010000834         2642 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_28623, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000834 DATIQF010000000
VERSION     DATIQF010000834.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2642
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28623"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1787
                     /locus_tag="VLL95_14325"
     CDS             <1..1787
                     /locus_tag="VLL95_14325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40085.1"
                     /translation="QELFVYAAVPYKIKPYEQILQNPKDTILFDHHWDAAVRELKQKM
                     GADGALLQGPDQTIYRVNFIEKILATLLAKLSNLIPEGGIWMNTQRPEWNDANNALVG
                     NGVSMVTLYYLHRFLKFFNNVLDNAAVENVSLSAELASFFNKVTDSIREANTMLNSGL
                     SNQNKKRILDQLGQAASAYRSGIYQNGFSGNKTSVSLQDLKQFTAEALLISGHTIQCN
                     KRADKLYHAYNLVSFSGDALNISHLSEMLEGQVAVLSAGYLSLNESKEVLDALRSSAL
                     FRADQFSYILYPNKSLPGFLEKNIIEPSLVASSGLLQKLVADGNTEIIERDVKGQYHF
                     NGNFKNASDLARGLDALSKESYHQEAAAEKGLILEIFEKVFNHKAFTGRSGTFYGYEG
                     LGSIYWHMVSKLLLAAQECCMKAIEEKAEADTVNALVKHYYDIKAGIGVHKTPSLYGA
                     FPTDPYSHTPAHRGAQQPGMTGQVKEDVLVRRTELGLLVKEGRLHFNPQFLKQDEFLK
                     QPQQLEYTDVNGKEGKLELPAGSLFFSCCQVPVVYTLSPQSKVSIEYADGSVAEKDSA
                     SLDQELSRKLFERSGAIKRIHVSINHLN"
     gene            1822..>2642
                     /locus_tag="VLL95_14330"
     CDS             1822..>2642
                     /locus_tag="VLL95_14330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40086.1"
                     /translation="MKSIWHNLAAVLIFVASLAWITTGNKNEVEKQLSAKEILGDSSY
                     LAISYGGYRQKTRDIQPTLPQIKEDMKLLSAMGIRVLRTYNVHLEEASNILKVITELK
                     QEDPRFEMYVMLGAWIDCKDAWTPNPDHYGESERNAVEIARAVELTKQYPDIIKIIAV
                     GNESMVKWATAYHVQAGVILKWVNHLQELKQKGELPKDLWITSSDNFASWGGATDNYK
                     TEDLVKLIKAVDYVSMHTYPMHDTHYNPQFWGVLKEEEHLSEREKIEAAMVRARD"
BASE COUNT          751 a          626 c          663 g          602 t
ORIGIN      
        1 accaggagtt gtttgtgtac gcagcagtgc catacaagat caaaccttac gaacaaatcc
       61 tgcagaatcc aaaggacacc atcttatttg accaccactg ggatgctgcc gtcagggaat
      121 tgaaacagaa aatgggtgcg gatggtgcct tgctccaggg cccggatcaa accatctacc
      181 gggtaaactt tattgaaaag atactggcca ccctgttggc caagctttcc aatttgattc
      241 cggaaggagg catttggatg aatacccaac ggccggaatg gaacgatgcc aacaatgccc
      301 ttgtgggcaa tggcgtttca atggtcaccc tttactattt gcaccgcttt ctcaagttct
      361 tcaataatgt gctcgacaat gctgctgttg agaacgtttc cttgtctgcc gaattggcca
      421 gcttcttcaa caaggtaact gacagtattc gcgaagccaa taccatgctg aacagtgggc
      481 tcagcaacca gaacaagaag cgcatcctcg atcaattggg gcaggcggct tcagcctatc
      541 gctccggcat ttatcagaat ggtttctctg gaaacaaaac cagtgtttcc cttcaggacc
      601 tgaaacaatt tacagcggaa gcgctgctga tcagcgggca caccattcag tgcaacaaaa
      661 gagctgacaa actataccat gcttacaacc tcgtcagctt ttctggagat gccctgaaca
      721 tttcccatct cagcgaaatg ctggaaggac aggtggcagt gctgagcgcc ggttatctct
      781 ctttgaatga atcgaaggag gtgttggatg cactcaggag cagcgctttg ttcagggcag
      841 atcagttcag ttacatcctc tatcctaata aatcattgcc cggcttttta gaaaagaaca
      901 tcatcgagcc atcgcttgtc gcatcatcag gcttgttgca aaagctggtg gcagatggca
      961 atacagagat cattgagcgg gatgtgaagg ggcagtacca cttcaatggc aatttcaaaa
     1021 atgcatctga cctggcccgt gggctggatg ctttgtcaaa agaaagctac caccaggaag
     1081 cagctgcaga gaaagggctg atccttgaaa tattcgaaaa ggtattcaat cataaagcct
     1141 tcaccggcag gtcgggcacc ttttacgggt acgaaggcct tggctctatt tactggcaca
     1201 tggtgtcgaa attgctgctg gctgcacagg agtgttgcat gaaagccatc gaagaaaaag
     1261 cggaagccga caccgtgaac gcattggtaa aacattatta cgacatcaaa gccggcatcg
     1321 gcgtacacaa gaccccatca ctgtatggcg ctttccccac tgatccgtac tctcacacgc
     1381 cggcccaccg cggcgcacaa cagccgggca tgaccgggca ggtaaaggaa gatgtgctcg
     1441 tcagaagaac agaactcggc cttttggtga aagagggcag gctgcatttt aacccgcaat
     1501 tcctgaagca ggatgaattc ctgaaacagc ctcagcagct tgaatacacg gatgtgaatg
     1561 gaaaggaagg caaactggaa ttgccggcag gctcactctt tttcagttgt tgccaggttc
     1621 ctgtggtgta cacgctttct cctcaatcca aagtgtcgat agaatacgcg gacggatcgg
     1681 ttgcggaaaa ggattctgct tcattggatc aggaactgag caggaagctg ttcgaacgct
     1741 ccggcgctat caaacggatc cacgtttcta tcaaccattt gaactaaaga attacccgtt
     1801 tcattaaata atgatggcac tatgaaatca atttggcata acctcgctgc tgtcctcatt
     1861 tttgtagcca gcctggcttg gattaccacc ggaaataaaa acgaggtaga aaagcagctt
     1921 agcgccaaag aaattttggg agattccagt tacctggcta tttcatacgg tggatatcgc
     1981 caaaaaacac gggatataca gcccaccctt ccccagatca aggaagacat gaaattattg
     2041 tcggccatgg gcatccgggt gctgcgaacc tacaatgtgc atttggaaga ggcatccaac
     2101 atcctgaaag tgatcaccga attgaagcag gaggatcccc ggtttgaaat gtatgtaatg
     2161 ctgggggcat ggatagactg caaagatgcc tggacgccca atcccgacca ttatggagag
     2221 agcgaaagaa atgcggtgga aatcgcaagg gctgtcgaat tgaccaaaca gtacccggat
     2281 atcattaaga tcattgctgt tggcaacgag tcgatggtga aatgggcaac tgcctaccat
     2341 gtgcaggccg gcgtgatcct gaaatgggtg aaccacctgc aggaactgaa gcagaaaggt
     2401 gaactgccaa aggatttatg gatcaccagc tccgacaatt tcgcttcctg gggaggcgcc
     2461 acagacaatt acaagactga agatttggtg aagctgatca aagctgtaga ttatgtttcc
     2521 atgcatacct accccatgca tgatacccac tacaatccac agttctgggg agttctgaaa
     2581 gaagaagaac atctttcaga acgtgagaag atagaggcgg caatggtaag ggcaagggac
     2641 ta
//
LOCUS       DATIQF010000835         2304 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_58926, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000835 DATIQF010000000
VERSION     DATIQF010000835.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2304
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58926"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(241..1776)
                     /locus_tag="VLL95_14335"
     CDS             complement(241..1776)
                     /locus_tag="VLL95_14335"
                     /inference="COORDINATES: protein motif:HMM:NF012664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40087.1"
                     /translation="MKKNVFAAALLAVLMITNLHTWAQQDSAAAANAAIKPEKFVTKH
                     SIKIDGKQINYTATAGTLILKNEKEEPIASFGYTAYSKDGETDMSNRPVTFSYNGGPG
                     SSSIWLHMGIMGPRRVVVNDPSPNGPAPYKLEDNNYSILDVSDVVMMDPVGTGLSKAV
                     GKAKNADFWGVDADIRSVSQFIKNYVQENERWNSPKYLLGESYGTFRSAGVADYMQTN
                     YGISVNGIVLVSNVLDLRTLLFLPGDDLPFILYLPTYAATAWYHNKLANKPANLDAFL
                     KEVRQYAYNDYAAALMKGDQLTAEEREKVLNKLVAYTGASKDYWDKANLRVNQPQFCQ
                     ELLRNEGLVVGRLDSRYKGYSQNLLSEYAFVDPQSEDISPAFMSAFMHYYTTELKVSK
                     DKNYNFGAYSLPGFNWDWKHQRSESMGFGVGTPSTAPDLLNAISNNPKMKVLVLNGIY
                     DMATPLAGSEYTMDHLGINKKIKPNITHKYYEAGHMMYIHNESAALFKKDVSEFISGT
                     IKK"
     gene            2001..>2304
                     /locus_tag="VLL95_14340"
     CDS             2001..>2304
                     /locus_tag="VLL95_14340"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-guanine transglycosylase"
                     /protein_id="HSR40088.1"
                     /translation="MPALQFELQHTDTASQARAGRITTDHGEILTPIVMPVGTVGTVK
                     AVTQQQLLDDVHAQIILGNTYHLYLRPGLEVLEAAGGLHRFNGWPKPILTDSGGYQV"
BASE COUNT          506 a          576 c          625 g          597 t
ORIGIN      
        1 gaatgagttc cctatatggt ggtaggtccc tacaataacg gagcgcttat tggtttcagg
       61 atgtatgacc tcccaaataa tcgtgttctg cgcaaaacaa aaatttgaga aaagcagcag
      121 gctcaacagg atcttcatac acgatggctt atgactttgg caaaggaagg aagcggtccg
      181 ccatgcaagc gcttccttcc ctggcagaag ggccaggcgg actcccgcaa cgccttccca
      241 tcatttttta atcgtacccg aaatgaattc actcacgtct ttcttgaaca aagcggctga
      301 ttcgttgtgg atgtacatca tgtgcccggc ttcgtagtat ttgtgcgtga tgttgggttt
      361 tatctttttg ttgatgccga ggtgatccat ggtgtattca gagccggcca gtggggtggc
      421 catatcgtaa atgccattca gcaccagcac cttcattttc ggattattgg atatggcatt
      481 caacaggtcg ggggcggtgg aaggcgtgcc cacaccaaag cccatgcttt cgctgcgctg
      541 gtgtttccag tcccagttga agccgggaag actgtaggcg ccaaaattgt aattcttgtc
      601 tttgcttact ttgagttcgg tggtatagta atgcatgaac gccgacatga aagcagggct
      661 gatgtcttcc gactgcggat ccacaaatgc atattcactc agcaggttct gtgaatagcc
      721 cttgtaccgc gaatcgaggc gtcccacgac cagaccttca ttgcgcagca attcctggca
      781 aaattggggc tggttgaccc gcaggttggc tttgtcccag taatctttgc tggcgccggt
      841 ataggccacc agtttgttca atactttttc tctttcttct gcagtcaatt gatcgccttt
      901 catgagggct gctgcataat cattgtaggc gtattgtctt acttctttca aaaaggcatc
      961 gaggttggca ggtttgttgg ccagcttgtt gtggtaccat gccgtggcgg cataagtggg
     1021 caggtacagt ataaagggca gatcgtcgcc gggcaggaac agcagggtgc gcaggtcgag
     1081 cacatttgac accagtacga taccattcac ggagatgccg tagttggttt gcatgtaatc
     1141 ggccacgcct gcggagcgga aagtgccata gctttcgccc agcaggtatt tgggcgaatt
     1201 ccatctttca ttttcctgca catagttttt gatgaactgg ctcaccgaac ggatatccgc
     1261 gtcgacgccc cagaaatcag cattcttggc tttgcccacg gctttgctga ggccggtgcc
     1321 cacggggtcc atcattacca catcgctcac atcgaggatg gaataattgt tgtcttccag
     1381 tttgtagggg gcgggtccgt tgggcgatgg atcattcacc accacgcggc gtggtcccat
     1441 gatgcccatg tgcagccaaa tggaggaaga gcccggaccg ccattgtacg agaaagtgac
     1501 agggcggttg ctcatgtctg tttcgccatc cttgctgtag gcggtataac caaaggaagc
     1561 gatgggttcc tctttttcat ttttgagaat gagcgttcct gccgtagccg tatagttgat
     1621 ctgtttgcca tcgatcttga tggaatgttt ggtcacaaac ttttcaggct tgatggcggc
     1681 gttggcagcg gcggcgctgt cttgttgcgc ccatgtgtgg aggttggtga tcatcaatac
     1741 tgccaggagg gccgcagcga atacattttt tttcatgcgg aatgagtttt ttgaaaatgg
     1801 ggatcgttaa gatacatgat caccattcaa ttttgcaagt gccgggcgaa atggaagggc
     1861 ttcaccattc ccattcatct atccgggtag gggacaatgc gtcatcaatg cgcaaggtct
     1921 tctttcgaag gacgttgcct tgaaaaaggc tcaccaggcc cgccatcaca agcaggagcc
     1981 tcccttacct ttgccgccct atgccggcat tacaattcga gcttcaacat accgataccg
     2041 cttcgcaggc ccgggcgggc aggatcacta ccgatcatgg cgagatcctg acacccatcg
     2101 tcatgcccgt gggcacagtg ggcaccgtaa aggcagtgac gcagcagcaa ctgctggatg
     2161 atgtgcatgc acaaatcatt ttgggcaata cgtatcacct gtacctgcgt ccgggcctcg
     2221 aagtgctgga agcagccggc ggcctgcacc gcttcaatgg ctggcccaaa cccatcctga
     2281 cggacagcgg cggctaccag gtat
//
LOCUS       DATIQF010000836         3095 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_74019, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000836 DATIQF010000000
VERSION     DATIQF010000836.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3095
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74019"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..251
                     /locus_tag="VLL95_14345"
     CDS             <1..251
                     /locus_tag="VLL95_14345"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF015546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0030163 - protein catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HSR40089.1"
                     /translation="GKLAGGLYGIKMGNVFFGESMFTLVPNASKAAFIWSVNQLKQEG
                     VALIDCQVYTEHLESLGARFIKRDEFIALLDANIPAQP"
     gene            337..1053
                     /locus_tag="VLL95_14350"
     CDS             337..1053
                     /locus_tag="VLL95_14350"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase family protein"
                     /protein_id="HSR40090.1"
                     /translation="MQKPLPCTIVLPDAYKNGSDSFPVLYLLHGYGGWHSNWILRVPE
                     LSKLADEFNTIIVCPEGGRNSWYFDSPLEPSSQYETFVGKEVPAFIDSAYRSRKSRMA
                     RMISGLSMGGHGALFIALRHPETFGVAGSMSGGLDLKESKGKYEIAEKIGDSTQWNNY
                     SVISMINTEQASQLKILIDCGVDDFFLQGNRAVHQKLVQLKVPHMYFEKEGGHSWDYW
                     RRSIPYHLFFFRQQRMSIAR"
     gene            complement(1039..1725)
                     /locus_tag="VLL95_14355"
     CDS             complement(1039..1725)
                     /locus_tag="VLL95_14355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40091.1"
                     /translation="MKQWMILVVFLAVADFVMAQCKTFKLSDRGDTLNCVDLKGRKQG
                     PWVERIPELRGNPGYEEEGVYIDGRKEGTWRKYTEQGDALAVENYKWGLKNGKCQYFS
                     FMGLEREESWWAMDPKKLYDTFDIPDLYEDGKYHKVVVKNEGHSMKHGKWTWYDPQTG
                     FIQRSEEFIRDSAINPLAAFGISNKAKKEPADTGKTTKKTEKPSIVQEWEKKNSGKKK
                     VKVRDGSTGY"
     gene            1769..>3095
                     /locus_tag="VLL95_14360"
     CDS             1769..>3095
                     /locus_tag="VLL95_14360"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40092.1"
                     /translation="MIPKLRQGILSMGMFSILHISLSSQPVVPTPASKRMVSLEAKRK
                     MAASSPFKTSFRNVGPTVMSGRVVDIDVNPDDPTEFYVAYATGGLWHTTNNGQSFTPI
                     FDNEDVIGLGDVTVQWKTRTIWLGTGEANASRSTYSGVGVYKSTDNGKTWQYLGLPES
                     HHIGEIIVHPADANIAWVAVTGHLYTPNKERGVYKTTDGGKSWKQVLYLDENTGAIEM
                     DINPKNPDELYANMWYKTRKAWNFEESGKTSGIYKSTDGGNKWSLISGEGSGLPNGPA
                     FGRSAVVVFEGNPNILYATVDNQTKRTPPAKEDTAAYKVDDFKTLTKEQFANLDDKKV
                     DSFLKQNRAYPRYSSKALKQMVSSDKVKPTAVYDYFNVNTGFEGTPIGFELYRSDDAG
                     KTWKKVNEKDQPNLYSTYGYYFARFAVSPSNENKIVVLGVPVLMSTDGGK"
BASE COUNT          803 a          757 c          741 g          794 t
ORIGIN      
        1 acggcaaact ggctggtgga ttgtacggca tcaaaatggg taatgtgttc tttggagaaa
       61 gcatgttcac cttggtgccc aatgccagta aggcggcttt catatggtcg gtgaaccaat
      121 tgaaacagga aggcgtggcg cttattgatt gccaggtata caccgagcat ttggaaagcc
      181 tgggtgcccg cttcatcaaa agagacgaat tcatagcttt actggatgcc aatattcccg
      241 cacagccgta aagcgttcat tttatttttc tgctcgattt tttctttgtg cgcctttggt
      301 ggcaaaacgg attcagtatg ggtttattcc aaagccatgc agaagccact tccttgtacc
      361 attgttttgc ccgatgctta caagaacggt tccgattcct ttcccgtcct gtacctgctg
      421 catggctatg gcggctggca cagcaattgg attttgcgtg tgccggagct gagcaagctg
      481 gcagatgaat tcaataccat cattgtttgc ccggaaggcg gccgaaatag ctggtatttt
      541 gacagcccgc tggagccgtc ctcccaatac gaaacctttg tgggcaagga agtgccggcc
      601 tttattgaca gtgcttaccg aagccgcaaa agcaggatgg cccgcatgat cagcgggctg
      661 agcatgggtg ggcacggcgc cttgtttata gcccttcgcc accctgaaac atttggtgtg
      721 gcaggcagca tgagtggcgg gcttgatttg aaggagtcaa aaggaaaata tgagatagcg
      781 gaaaagattg gtgacagtac ccaatggaac aactattcgg tcatttcaat gatcaatacg
      841 gaacaggctt ctcaactgaa gatcctgatt gattgtggtg tggatgattt ttttctgcaa
      901 ggcaacaggg cggtgcacca aaaactggtt caattgaaag taccccatat gtattttgaa
      961 aaagaaggtg gacacagttg ggattattgg cgcaggtcca ttccttatca cctgtttttc
     1021 ttccggcaac aaaggatgtc aatagcccgt tgagccatcg cgaaccttca cttttttctt
     1081 cccggagttt ttcttttccc actcctgcac tatcgaaggt ttctctgttt tcttggttgt
     1141 tttcccggta tcggcaggct ctttttttgc cttgttcgaa ataccaaatg cggccagagg
     1201 attaatggcg ctgtcgcgaa tgaactcttc gctgcgctgt atgaacccgg tttgcggatc
     1261 gtaccaggtc cacttgccat gcttcatgct atggccctcg tttttcacca ccactttgtg
     1321 gtatttgcca tcctcgtaca ggtcggggat atcgaaagtg tcgtacagtt ttttgggatc
     1381 cattgcccac cagctttctt cccgctccag gcccatgaaa gagaaatact ggcacttccc
     1441 attcttcagc ccccatttgt agttttcaac agccagtgca tcgccttgtt ccgtgtattt
     1501 gcgccaggtt ccttcttttc tgccgtcaat atatacgcct tcttcttcgt agccgggatt
     1561 gccacgcagt tcaggaatgc gttccaccca cgggccttgc ttccgcccct tgaggtcaac
     1621 gcaattcaac gtgtcaccgc ggtcgctaag tttgaatgtt ttacattgtg ccattacaaa
     1681 atcagctact gccaaaaaca ccaccaaaat catccactgc ttcatggcaa tctcaacgtt
     1741 ttctgaacag ataaattgtc ttctttctat gattccaaaa ttacgccagg gcatactgag
     1801 catgggcatg ttcagcatcc ttcacatttc attatcatct cagcccgttg tcccaacgcc
     1861 ggcctccaaa agaatggtca gcctcgaagc caaaagaaaa atggcggcct cctcgccttt
     1921 caaaaccagt tttcgcaatg ttgggcccac ggtcatgagt ggtcgtgtgg tggatattga
     1981 tgtcaatcct gatgatccta cggagtttta cgtagcctat gccaccggcg gattgtggca
     2041 tactaccaac aacggccaat ccttcacccc cattttcgac aatgaagatg tgattggact
     2101 gggcgatgta acagtgcaat ggaaaacccg gaccatctgg ctgggaaccg gcgaagcgaa
     2161 cgccagccgg agcacctata gcggtgtggg tgtatataag agcaccgaca atggcaaaac
     2221 ctggcaatac ctgggcttgc ccgaatcgca ccatatcgga gagatcattg ttcacccagc
     2281 agatgccaac attgcctggg tagctgtcac agggcatttg tatacgccca acaaagaaag
     2341 aggcgtatac aaaaccactg atggtggcaa aagctggaag caggtgttgt acctcgatga
     2401 aaataccggt gccattgaaa tggatatcaa tccaaagaat cccgacgaac tctatgccaa
     2461 catgtggtac aaaacccgca aggcctggaa ctttgaagaa agcggcaaaa caagtggcat
     2521 ttacaaaagc acagacggtg gcaacaaatg gtcactcatt tccggcgaag gctctggcct
     2581 gccaaacggg cctgcttttg gtcgcagtgc agtggtagtg ttcgaaggca atcccaacat
     2641 tttatatgcc actgtcgaca accaaaccaa aaggacgcca ccagcaaaag aagatacagc
     2701 agcctacaaa gtggatgatt tcaaaacact aacaaaagaa cagtttgcca acctggatga
     2761 caagaaagtg gattctttcc tgaagcaaaa cagggcttat cctcgataca gcagcaaagc
     2821 cttgaagcaa atggtgagca gtgacaaagt gaaaccaact gctgtatacg actatttcaa
     2881 tgtgaacact ggtttcgaag gcacgcccat tggttttgaa ctttatcgca gcgatgatgc
     2941 cggaaagaca tggaaaaaag taaatgaaaa agatcaaccc aatttgtaca gcacgtatgg
     3001 ctattatttt gcccgcttcg ctgtcagccc ttccaacgaa aacaagattg tggtgctggg
     3061 agtgcccgta ttgatgagta ccgatggcgg caaat
//
LOCUS       DATIQF010000837         1782 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_89169, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000837 DATIQF010000000
VERSION     DATIQF010000837.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1782
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89169"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..318)
                     /locus_tag="VLL95_14365"
     CDS             complement(<1..318)
                     /locus_tag="VLL95_14365"
                     /inference="COORDINATES: protein motif:HMM:NF012336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40093.1"
                     /translation="MSVYVVDAIRTPIGKYAGALSSVRPDDLLAKAIKALLERNPSVD
                     PTVIEDVIAGAANQSGEDNRNVARMAALLSGLPSSVAGATVNRLCASGLQAIMDAARA
                     IHHG"
     gene            331..1482
                     /gene="rlmN"
                     /locus_tag="VLL95_14370"
     CDS             331..1482
                     /gene="rlmN"
                     /locus_tag="VLL95_14370"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: protein motif:HMM:TIGR00048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HSR40094.1"
                     /translation="MKWSKIGLLLHPESSNIQGAWHFAGAKTFTSLTQTPAYLCRMQN
                     IRHLSKDELTNWITSQGLQKFRAQQVWEWLWTKQAHSFADMTNLSKELRQQLGDHFSL
                     PALSIDETQYSSDGTVKSRFKTWDGHAVEGVLIPTDERKTACVSSQIGCSLSCKFCAT
                     GYLERKRNLTYDEIYDEVVLINQQSMRVYDKKLTNIVFMGMGEPLLNYNNVLKAIERI
                     TAEDGLAMSPRRITVSTAGVAKMIRKLGDDQVRFKLALSLHAANDAKRHEIMPINDTN
                     NIKELIEALNYFYTKTKNEITFEYILFDNFNDSLKDADELIKIYRQVPADLINIIEYN
                     PIDMARFRKPTEEKTDAFMAYLEKHKVNARLRRSRGKDIDAACGQLANK"
     gene            complement(1501..>1782)
                     /locus_tag="VLL95_14375"
     CDS             complement(1501..>1782)
                     /locus_tag="VLL95_14375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40095.1"
                     /translation="DYLDDVSTYYADPALLLNAFGPRSVEMAYRGGELPNGNPSYPGT
                     GSLRGTPASKDWYYAGLIRLNYTFGGRKTLAGSSGPSYNKKQYACPTVY"
BASE COUNT          492 a          446 c          459 g          385 t
ORIGIN      
        1 gccgtggtga atggcacgtg ccgcatccat gatggcttgc aagccagaag cacagagccg
       61 gttgaccgta gcgcctgcca cgctggaggg caaaccagac agcaaagcag ccatgcgagc
      121 cacgttccgg ttgtcttcgc cactttggtt ggcagcaccg gcaatcacat cttcaattac
      181 agtgggatca acagaaggat ttcgctccag caaggctttg atcgccttgg ccaacaggtc
      241 atcagggcga acagaggaca gagcaccggc atattttcca atgggagtac ggatggcatc
      301 aacaacgtaa acagacatat caggcaagct ttgaagtggt caaaaatagg cttgttgctg
      361 catcccgaat ccagtaacat ccaaggtgcc tggcattttg ccggcgcaaa gaccttcaca
      421 agccttacac aaacgccggc ctatctttgc cggatgcaga atatccgcca tctcagcaaa
      481 gacgaactca ccaattggat caccagccag ggactccaga agttcagggc ccagcaggtt
      541 tgggaatggc tgtggaccaa acaggcccac agttttgcgg atatgaccaa cctgagcaag
      601 gaattgcgtc agcaattggg ggatcatttt tcattgcctg cattgtcaat tgatgagacc
      661 cagtacagca gcgatggcac tgtaaaaagc aggttcaaaa cctgggacgg gcatgcggtg
      721 gaaggcgttt tgattcccac cgatgaaagg aaaaccgctt gtgtttcttc acaaataggc
      781 tgcagcctca gttgtaagtt ttgcgccacc gggtacctcg agcggaaaag aaaccttacc
      841 tacgatgaga tctatgatga agtggtgctg atcaaccagc agagcatgcg ggtgtacgac
      901 aagaagctca ccaacatcgt atttatgggg atgggcgagc cattgctgaa ttacaacaat
      961 gtgctgaagg ccatagaacg cattaccgct gaagatggcc tggctatgag tccgagaagg
     1021 attactgtaa gtaccgccgg cgtggccaaa atgatcagga aactgggaga tgaccaggta
     1081 cgtttcaaac tggcgctcag cctgcatgcc gccaacgatg ccaagcgcca cgagatcatg
     1141 cccatcaatg acaccaacaa tatcaaggag ttgatcgaag ctttgaatta cttctacact
     1201 aaaacgaaga atgagatcac tttcgagtac attctcttcg acaatttcaa tgacagcctg
     1261 aaggatgcgg acgaattgat caaaatttac cgccaggttc ctgcagatct tatcaatatc
     1321 attgagtata accccattga tatggctcgc ttccgcaagc ccactgagga aaaaaccgat
     1381 gcctttatgg cctacctcga aaagcacaaa gtgaatgccc gccttcgcag gagccgtggc
     1441 aaagacattg atgccgcctg tggtcagttg gccaataagt aaggctgaat attctatgga
     1501 tcaatacacc gttgggcagg catattgctt cttgttgtaa gatggacccg atgaacccgc
     1561 caaagttttt cttcccccga aagtatagtt caacctgatg agcccggcat aataccagtc
     1621 tttggaagcg ggtgtacccc gcagcgagcc agtgccgggg tagctgggat tgccgttggg
     1681 aagttctcca ccgcggtagg ccatttctac agaccttgga ccaaaggcgt tgagcagcaa
     1741 tgcaggatcg gcgtaatagg tgctcacatc atcaaggtaa tc
//
LOCUS       DATIQF010000838         1616 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_150437,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000838 DATIQF010000000
VERSION     DATIQF010000838.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150437"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..254)
                     /locus_tag="VLL95_14380"
     CDS             complement(<1..254)
                     /locus_tag="VLL95_14380"
                     /inference="COORDINATES: protein motif:HMM:NF017451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four helix bundle protein"
                     /protein_id="HSR40096.1"
                     /translation="MFLQLNHQKLFVYSEARLLSKHCYQFTKTLPPEERFNLVIQIRR
                     AALSIHLNLAEGASRKSLAERKRFYEIARGSAIEIDAALDA"
     gene            complement(391..1422)
                     /gene="hemH"
                     /locus_tag="VLL95_14385"
     CDS             complement(391..1422)
                     /gene="hemH"
                     /locus_tag="VLL95_14385"
                     /inference="COORDINATES: protein motif:HMM:NF012964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HSR40097.1"
                     /translation="MTAIRKGIVLMNLGSPDSTQVKDVRRYLDEFLMDERVIDVPKLL
                     RMLLVKGIIVSFRAPKSAKAYQSICTDAGSPLIVLTRQLQQALQQQVTAPVSVAMRYG
                     NPHPKQAYDELLAKVPDLEEVILVPLYPHYAMSSYETAVEYAKEIYQKNAYAFKLTIL
                     PPYYKHESYIDALAESIRPYLQHEHDHILFSYHGVPERHIRKGDITGCHCLKVENCCA
                     VDSPAHAQCYRHQCIVTTDLVAARLGIPQNKYSFSFQSRLGKDEWLKPYTAKRFEEMP
                     KEGVKKLLVACPAFVSDCLETLEEIADEGKEEFMHAGGENFTMIPCLNVHPKWVEAIV
                     NLVNESKGQ"
BASE COUNT          421 a          362 c          374 g          459 t
ORIGIN      
        1 gcatctaatg cggcatctat ttcaatggct gaacctcttg cgatttcata gaatcgtttt
       61 cgctccgcca atgatttgcg agatgctcct tctgcgaggt tcagatgaat agagagtgca
      121 gcacgtcgga tttgtattac aaggttaaat ctttcctctg gcggtagtgt tttggtaaat
      181 tggtagcagt gtttggaaag caatcttgcc tcgctataca caaatagctt ttggtgattg
      241 agttgcagaa acattggtgt gtttttcttt aaaataatga tcctgcagca taataatcga
      301 aaatcaaagc ttcgaactca aattttactg gttcaggcta ttaacctgag aaattcacct
      361 gttcatccac tggcccatct cagcattcac tcattgacct tttgactcat tcactaagtt
      421 tacgatcgct tccacccatt tcggatgcac attcaaacag gggatcatcg taaagttttc
      481 accgccggca tgcatgaatt cttccttacc ttcgtctgct atttcttcca gtgtttccaa
      541 acagtcgctc acaaaagccg ggcaggccac cagcaatttt ttgacgccct ctttgggcat
      601 ttcttcaaaa cgcttggcgg tatagggttt cagccattca tctttaccca gcctgctctg
      661 aaaactgaaa ctgtatttgt tttgggggat acctagtctg gctgccacca aatcagtagt
      721 aacaatacat tgatgacgat aacactgtgc atgggccggc gaatcaacag cgcagcagtt
      781 ttccactttg aggcaatgac aaccggtgat gtcgcctttg cgaatatgcc gttccggaac
      841 gccatgatag ctgaacaaaa tatgatcatg ttcgtgctgc aaataaggac gaatgctttc
      901 ggctaatgca tcgatgtaag attcgtgttt gtaataagga gggagaatgg tgagtttgaa
      961 ggcgtatgca tttttttgat agatttcttt ggcatactcc acggcggttt catagctgct
     1021 catggcgtag tgcgggtaga gcggcaccag tatcacttct tccaggtctg gcactttggc
     1081 cagcaattca tcatacgcct gtttgggatg cggattgcca tagcgcatgg caacgcttac
     1141 cggggcagta acctgctgct gcagggcctg ctgcaattga cgggtgagca caatgagggg
     1201 agaacccgcg tcggtacaga tgctctggta agctttggca gacttgggcg ccctgaaaga
     1261 aacaatgatg cctttcacca atagcatgcg tagcagtttg ggcacatcaa tcaccctttc
     1321 atccatcaaa aattcatcca ggtagcggcg aacatccttt acctgggtgg aatctggaga
     1381 accaaggttc attaatacta ttcctttgcg tatggcggtc attcgtaaac tttttttcaa
     1441 ttccctccca ctgcatggat aggcgacgaa ggagaggctg caaagcaaat tcaaaatggc
     1501 aacaggaatg taaatgtttg ggaataggaa ctaatatgac aaacacatga cagtatgatg
     1561 catcgaaatt ttgaccggcg aatacctttg cagggctcat gaaattgaac gcagat
//
LOCUS       DATIQF010000839         5722 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_256578,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000839 DATIQF010000000
VERSION     DATIQF010000839.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5722
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256578"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..195)
                     /locus_tag="VLL95_14390"
     CDS             complement(<1..195)
                     /locus_tag="VLL95_14390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40098.1"
                     /translation="MTLVKLNQRPSAHAFSGVFDNLFSEFEQAFKHDFRNQGTFQPPV
                     NIVETEEAFHLELNAPGRNKN"
     gene            473..886
                     /locus_tag="VLL95_14395"
     CDS             473..886
                     /locus_tag="VLL95_14395"
                     /inference="COORDINATES: protein motif:HMM:TIGR04191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrxA/BrxB family bacilliredoxin"
                     /protein_id="HSR40099.1"
                     /translation="MYPAEIVEPMKSELTEYGFEELLSPDDVDAQMKKQGTTLVMINS
                     VCGCSAGSARPGVLMAVHNAAKKPDFLTTSFAGFDTAAVAKVREYLLPYPPSSPAIAL
                     FKDGQLVHMIERHQIEGRPAQVIASNLISAFEQYC"
     gene            977..2266
                     /locus_tag="VLL95_14400"
     CDS             977..2266
                     /locus_tag="VLL95_14400"
                     /EC_number="2.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:NF013915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase family
                     protein"
                     /protein_id="HSR40100.1"
                     /translation="MYPNLYFFLKQVFGIEIQGFKLVNSFGFMVALAFLSAAWALTTE
                     LKRRQAAGWLQSTEQEIWVGKGANWSDVIWNVFFGFIVGWKFLGFFIMKEEAYADPQA
                     FLLSGNGSVPAGVLLALVFGGMRWYSGNKTKLAKPEKRIIRVWPHDRVGDMIILAAVF
                     GFGGAKLFHNLENWEELVKDPLGALVSFSGLTFYGGLICAGAAIIYYARKHKINLWHL
                     TDSFGPALMLAYAVGRIGCMVAGDGDWGVVNSAYVANANGKVVMATPQQYADSAARYL
                     DYYKRAQHGVKEVATTADILHKPFKAPAFMPDWMVAFTFPNNVLSEGVTLPDCEGQWC
                     NRLPLPVYPTPFYETVMGLMIFGVLWTLRKKLSKPGMLFGVYLIFNGLERFLIEKIRV
                     NTTFSFMGFHPSQAELISLCLMIVGAAIFVYRRKAHQ"
     gene            2466..4931
                     /locus_tag="VLL95_14405"
     CDS             2466..4931
                     /locus_tag="VLL95_14405"
                     /inference="COORDINATES: protein motif:HMM:NF026255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR40101.1"
                     /translation="MNYRFKLRLLLFFFSSLALQGMSQKHYQEITGKVMASGKNLEGS
                     TVAVLRASDSAVAKYATTNAEGIFETGLLKPGQYVLKISSIGYKPLLSKPLTVLEGGS
                     VVNAGTVELQLETQQLKDVVVTARKPLVEQKLDKTIVNIEGQPGNAGITALEVLEKSP
                     GITVDKDGNISLKGKDGVMVLMDGKPTYMSNADLANYLRSLPSNQLESLEIMTNPPAK
                     YDAAGNAGIINIKTKKNKAQGFNGTLTVGAGMGVYPKANSSIGINYRKNKWNVFSNYS
                     YNYNENFQDLYITRNFRDKNSLELTSVFDQVANMSRISNSHNAKLGADFYATKKTTLG
                     VVFTGFANDVANYNDNITNIYNAQGILQTQTLATSDFAMSFKNLGANFNIRHQFDSTG
                     RELSADVDYLRYDNGNRQYFNNYFFDKDGNKQKPDEFVYGNLPALIDIFSAKADYVQP
                     FKKDMKLEAGWKSSIVKTDNDAQYYILNNVNGQWEVDISKTNHFIFTENINAAYFNLS
                     KKFNKKWSAQAGLRAENTNATGEQTTTDQNFKRNYTQVFPTLYVQYSANDKNSFVINY
                     GRRIQRPSYQDMNPFIYFLDRFTYQAGNPNLIPQSAHNIEFTHSYQGFLNTTLNYSRT
                     TDLITQVFRQNDVTFTTFITPDNVATRNQIGMSVNAGMPVTKWWRANVFVNGFYNDYK
                     GEINGGYVATSLWSWMTNIQNQFTFKKGWGAEVSGFYRSKMLEGVIESLPMGVINLAV
                     SKKIMKDKGTLRLNFRDPFDLQYFRGQSKYQNIDIRFTNYWDNRVVNASFTWRFGKVL
                     KSAPQRKTGGANDEQSRVNSGNQ"
     gene            5031..5522
                     /locus_tag="VLL95_14410"
                     /pseudo
     CDS             5031..5522
                     /locus_tag="VLL95_14410"
                     /inference="COORDINATES: protein motif:HMM:NF016355.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
BASE COUNT         1619 a         1283 c         1341 g         1479 t
ORIGIN      
        1 gttcttgttg cggccaggtg cattcaattc gaggtgaaaa gcttcctccg tttcaacaat
       61 gtttaccggt ggctgaaatg tgccctggtt gcggaaatca tgcttgaatg cctgttcaaa
      121 ttcactgaac agattgtcga atactccgct gaaagcatgg gcggaaggac gttgattgag
      181 ttttacaagt gtcatatttc tattttttgg ggttgaatga tgttttcttc catccattcg
      241 aaccaaaact cattccatcg catttcttcg gccggtctct tgcaatttct tcaggtcatt
      301 ccataaaata atgccactat ggcagctgct gctttgcaaa tgcgccgtat tggcattttg
      361 tatcgttctt ttcgagatta gaaaagaaat cgccaagctt gagaaaccgg tttttcataa
      421 cagataatcg cggaaatttg ctccccaatt aaacatcaaa aattaaagaa tcatgtatcc
      481 agccgagata gtagaaccca tgaaatccga actcacggag tacggttttg aagaattgct
      541 ttcccctgat gatgtggacg ctcaaatgaa gaagcaggga accactttgg taatgatcaa
      601 tagtgtttgc ggttgcagtg ccggcagcgc ccgcccgggt gtgctgatgg ctgtgcacaa
      661 cgccgccaaa aagcctgatt tccttaccac ctcctttgcc ggcttcgata ccgccgctgt
      721 agccaaggtt cgcgaatacc tgctgcctta ccctccatca tcgccagcca ttgcgttgtt
      781 caaagatggc cagttggtac acatgattga gcgccaccaa attgaaggtc gcccggcaca
      841 ggtaattgcc agcaacctca tcagcgcatt cgagcaatat tgctgatagt cagtcattat
      901 gattttgata aaaaaccttt ccgaatcatc gggaaggttt ttatttgctc attcgtcatt
      961 gtttcaaatt gggtgaatgt atcctaatct ctattttttc ctgaagcagg tgttcggcat
     1021 tgaaatccag ggtttcaaac tggtcaacag ttttggattc atggtagcgc tggctttcct
     1081 gagtgcagcc tgggcgctaa ccacagaatt gaagcgcagg caggccgccg gttggttgca
     1141 gtcaactgaa caagagattt gggttggcaa gggtgccaac tggagcgatg tgatatggaa
     1201 tgtgtttttt ggtttcatag tcggttggaa attcctcggc ttctttatta tgaaggagga
     1261 agcctatgct gatccacagg ctttcctgtt gtcggggaac ggcagtgttc cggcgggtgt
     1321 attgctggca cttgtttttg gcggcatgcg ctggtacagc ggcaacaaaa ccaaactggc
     1381 caagcctgaa aaacgcatta taagggtgtg gccgcatgac agggtaggtg atatgatcat
     1441 ccttgctgct gtatttggtt ttggcggggc caagcttttt cacaacctgg aaaattggga
     1501 ggaactggta aaagatccgc ttggcgccct ggtttcattc agcgggctga ctttttatgg
     1561 cggacttatt tgtgccggtg ccgccataat ttattatgcc cgtaagcata agattaacct
     1621 ctggcatctg acagactcat ttggtccggc gcttatgctg gcatatgctg taggccgaat
     1681 cggctgcatg gttgccgggg acggagattg gggagtagtg aatagtgctt atgtggccaa
     1741 tgccaatgga aaagtggtca tggctactcc acaacagtat gccgattcag ctgccaggta
     1801 cctcgattat tataaaagag cccagcacgg cgtgaaggag gtggcaacca ctgccgatat
     1861 tttgcataag cctttcaagg cccccgcatt tatgcccgac tggatggtgg cattcacctt
     1921 cccgaacaat gttttgagcg aaggcgttac attgcccgat tgcgaagggc aatggtgcaa
     1981 caggctgccg ctaccggttt atcctacacc gttttacgaa accgtaatgg ggctcatgat
     2041 ttttggagtg ctatggacgc taaggaaaaa gttgtccaaa cccgggatgc tttttggagt
     2101 ttacctgatt ttcaatgggt tggagcgctt cctgattgaa aaaatcaggg taaacacaac
     2161 attctcattc atgggattcc atccttcaca ggcagaattg atttcgcttt gtctcatgat
     2221 tgtaggagcg gcaatatttg tttacaggcg aaaggcgcat cagtaacatt ccaataacga
     2281 ctttagtctt acatccgtca cccttcaaaa ggtgccggat ttttttattt caaaacagcc
     2341 ccttgtttta gccattcatc atcgcaagcc aaccacttat cttgttttct attgtactat
     2401 gccatacaag gtaccaatct ttgcctatct gtttttattc aaactcaaac ttaaatcatc
     2461 acaccatgaa ctaccgcttc aagctacggc tattgctatt cttttttagc tcccttgcgt
     2521 tgcagggaat gagccaaaag cattaccagg aaattaccgg gaaggtgatg gcctccggta
     2581 aaaacctaga aggttctaca gtagcagttc ttcgagccag cgattcagct gttgccaaat
     2641 atgccaccac caatgcagag ggcatttttg aaactggcct gctgaaacca ggccagtatg
     2701 ttctgaagat ttcctctatt ggttacaaac ccttattgag caaaccgttg actgttctcg
     2761 aaggaggatc ggttgtgaac gctggaaccg tggaattaca gctggaaaca cagcaattga
     2821 aagatgtggt ggtgacggct cgcaaaccgc tggttgaaca aaaacttgac aagaccattg
     2881 tgaatattga gggacagcca ggcaatgctg gtatcaccgc cctggaagtg ctggaaaagt
     2941 cgccgggaat caccgttgac aaggatggaa acatcagcct caaagggaaa gatggtgtga
     3001 tggtgctaat ggatggaaag cctacctaca tgagcaacgc agacctggcc aactatttga
     3061 ggagcctgcc cagcaaccag ttggaatctt tggaaataat gaccaatcca cctgccaagt
     3121 atgacgctgc cggcaatgca ggtatcatca acataaaaac caagaagaac aaagcacaag
     3181 gtttcaatgg aacgctgaca gttggagctg gaatgggagt ttatccaaaa gcgaacagta
     3241 gtattggtat caattaccgt aagaataaat ggaatgtttt ctccaattat tcctacaact
     3301 acaatgagaa ttttcaggac ctctacatca cccgcaactt cagggacaag aactcacttg
     3361 aattgacatc cgtgttcgac caggtggcta atatgtcacg catcagcaac agccacaatg
     3421 cgaaattggg cgccgacttt tacgccacta agaaaaccac tttgggtgtt gtattcactg
     3481 ggttcgcaaa tgatgtggcg aattacaacg acaacatcac gaatatttac aatgcacagg
     3541 gcatcctgca aacccaaaca ttggccacca gtgattttgc aatgagtttc aaaaacctgg
     3601 gagccaattt caacattcgc catcagtttg acagcaccgg cagagaattg agcgcagatg
     3661 tagattacct caggtacgac aacggtaacc ggcaatattt caataactac ttcttcgata
     3721 aggatggcaa taagcagaag ccggatgaat ttgtgtacgg caatcttcct gccctgatcg
     3781 acatcttcag cgccaaggct gattatgtac agccatttaa aaaagacatg aaactggaag
     3841 ccggctggaa atcaagtatc gtgaagacag acaatgatgc gcaatactat atattgaata
     3901 atgtcaacgg ccagtgggaa gtggatattt caaaaacaaa ccatttcata tttactgaaa
     3961 acatcaatgc tgcctacttc aatttatcaa agaagtttaa taagaagtgg agcgcacaag
     4021 ccggacttcg tgcggaaaat accaatgcaa caggagagca aaccaccacg gaccagaact
     4081 tcaagcgcaa ctatacccag gtgtttccaa ccttgtacgt ccagtactcc gccaacgaca
     4141 agaattcatt tgtcattaac tatggtcgtc gcattcaaag gcctagttac caggatatga
     4201 atcctttcat ttacttcctc gacaggttta cctaccaggc gggcaacccc aacctgatac
     4261 cacaatcggc gcataatatc gagtttacac acagctacca gggattcctc aataccaccc
     4321 ttaactatag ccgtaccacc gatttgatca cccaggtgtt tcgccagaac gatgttacgt
     4381 tcactacatt catcacgcct gataacgttg ctacccgcaa tcaaattggg atgagtgtga
     4441 atgccggcat gcctgtaacg aaatggtgga gagccaatgt ttttgtaaat ggtttttaca
     4501 acgactataa aggagagatc aacggtggat atgtggccac ctccttatgg agttggatga
     4561 ccaacatcca aaaccagttc accttcaaaa aagggtgggg ggcagaagtc agtggttttt
     4621 acaggagtaa aatgctggaa ggcgtgattg aatcgttgcc catgggagtg atcaacctgg
     4681 cagtaagcaa gaaaatcatg aaggacaagg gaaccttgcg cctcaatttc agggatccct
     4741 ttgacctgca atatttccgt ggccagagca agtaccagaa tatcgacatc cgctttacca
     4801 attattggga caacagggtg gtaaatgcca gctttacctg gcggtttggt aaggttctga
     4861 aatcagcacc acaacgcaaa accggtggag ccaacgacga acaaagccgg gtgaatagtg
     4921 gcaaccaata atattcaata caacttttga aagagcgcct tcccatcatg ggaggcgttt
     4981 cttttacata tgatcatttc gcttattttg tggtttcaaa cagagatgcc atgccaagtt
     5041 ttgatattgt ttccaaagta gacgcccaga cgctggataa tgcagtgaat gtgaccagga
     5101 aagagatcac caaccggttc gattttaaag ggagtcatgt ggtcattgac ctggataaaa
     5161 agaccttcac cctgaacatg gaagccgaca gcgacatgaa gatggaacag atcatcgatg
     5221 tactcatcag ccgatcaatg aagcaagggc tggatggcca ggctttcgac ttgtcgaaag
     5281 aaggggccca aagcggaaag gtttggaaaa aaacggtagc tgttcgcaat ggcctgaaac
     5341 aggaagatgc caagaaaata gtgaaaatga taaaggacag cggcctcaaa gtacaggctg
     5401 ccatcatgga tgacatcatt agggtaacat gaaagaagat cgatgattta caggacgtta
     5461 ttgccaaatg ccggcagtct gattttggga ttcccctgca gtacgtcaat atgaaaagct
     5521 gatttttcca cccggtttca ccctttttgg gcgggaaacc tctttttatg gcgctatttt
     5581 ctaatttttt tagcctgaaa acataccaat tagcggtcaa acccctactt ttgccgacct
     5641 aaataaacag cccggtcgca gtcgggcaaa aaaacagaaa gcaatgaaaa aagatatcca
     5701 tcctaagagt tatcgcctgg tt
//
LOCUS       DATIQF010000840         3446 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_58999, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000840 DATIQF010000000
VERSION     DATIQF010000840.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3446
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58999"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1763)
                     /locus_tag="VLL95_14415"
     CDS             complement(<1..1763)
                     /locus_tag="VLL95_14415"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HSR40102.1"
                     /translation="MKSCYITSVLFALMLCGTGFSQWYDPEKVNKKAQFIYSGAIDQL
                     RDGQMEAGKKLLHAALKLDPKFVDAWLSLAGACGQMKQYDSAVMYYEKSFSLDSVYTA
                     DMKLSYSINLAGMGRFEDAGKAVQQFLALPRLDPRSVKAGEYRLRCYQFAQQFAAAHA
                     ADAAKFQPENLGDSINSSRSEYYPSFTINDSLMVFTRRGDGIREDFYSASKKDQSYSK
                     ASKLAGQLNDEPSKGGLMISQDGEWLIFAGNYGGLGFGDFDLYICYATPQGWSEPFNL
                     GENINTEYWESSPTLSPDKQILYFSSNRPGGQGGKDLYMSRRLPNGKWSPAENMGTNF
                     NTSADELAPFIHADNQTLFFTSGGHPGYGGSDIYLCRKGPGGQWSVPQNLGYPVNTID
                     DDGSLSVAADGKTAYFASVRSEGRGGLDLYRFELPSYARPYRTLWVSETVTDAVTHKG
                     LPSAIELKNVTTNEVMQKVVTDERGNYLVTLPVGNNYSFTVNRQGYLFYSDRFDLSGQ
                     PADSTYEKNIALQPIQVNASLELKNILYESNSFKLNPSSFIELDKLVQLLKDNPSIKV
                     QINGHTDNVGKPADNLLLSTNR"
     gene            1899..>3446
                     /locus_tag="VLL95_14420"
     CDS             1899..>3446
                     /locus_tag="VLL95_14420"
                     /inference="COORDINATES: protein motif:HMM:NF020390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1800 domain-containing protein"
                     /protein_id="HSR40103.1"
                     /translation="MDRRDFLAVGKPAGNTTGAVGLKKQEPARQKEYTPRVQSGINPY
                     KQTLAEDDLIHLLKRTLFGASPADVNFFKGKSLDQVVNELLTITGTTTTVTVKTYTPG
                     ATTPANDPDQSLAAGQPWVTVHTNDGSVNASRRASLKAWWMGQLVNQSRNVQEKMVLF
                     WHHHFAAETADIGNGIACYLYNKTLRQYALGNFKAFVKAITLEPGMLRYLNGERNLKS
                     APDENYARELQELFTVGKGSGSKYTEDDVKQAARVLTGFRVNYANITSYFDANQHDTG
                     SKTFSAFYGGKTITGKTGAAGAGELDELLDMIFATQEVAKHIVRNIYRWFVYYEIDTQ
                     VEQDVIAPLANIFRSSNYDIKALMTALLKSEHFFDPLNRGCQIKSPIDLVVGGVREFG
                     TVFPAATDYATNYLMWSWLQTNAANMQQNIGDPPDVSGWKAYYQEPLFYEIWINSDTL
                     PKRNQYTDTMIINGYTRNSITIRFDAIEFAKGMSKPGDPNLLLADVLKYLYRISLSAA
                     TIAQIKKD"
BASE COUNT          834 a          885 c          867 g          860 t
ORIGIN      
        1 cggttggtgc ttagcagcag gttgtcggcc ggcttgccta cattgtcggt gtgcccgttg
       61 atctgcacct tgatggatgg attgtctttc agcaactgca ccagtttgtc cagttcaata
      121 aatgaagaag gattcagttt gaaagaattg ctttcataca agatgttctt cagttccagc
      181 gaagcattta cctgtatggg ttgtagcgca atgttctttt cataagtgct gtcggctggt
      241 tgaccgctca ggtcaaatcg atcgctgtaa aacaaatagc cctggcggtt taccgtgaaa
      301 gagtaattgt tgcccacggg cagcgttacc aggtagttgc ctctttcatc ggtcaccacc
      361 ttctgcatca cttcgttggt ggttacattt ttcaattcaa tagcggaggg cagtcctttg
      421 tgcgttactg catccgttac cgtttcactg acccagagtg ttcgataggg cctggcgtaa
      481 gacggcaatt cgaaccggta caaatccagt ccgccgcggc cttcgctgcg tacgctggca
      541 aagtaggcgg tcttgccatc ggcggccacg ctcaggctgc catcatcatc aatggtattg
      601 acaggatagc ccaggttttg tggcacactc cactggccac ctgggccttt gcgacacagg
      661 taaatgtcgc tgccaccata gccgggatga ccacccgagg taaaaaacaa agtttgattg
      721 tcggcatgaa tgaaaggcgc cagttcatcg gcactggtat tgaagttggt acccatgttt
      781 tcagccgggc tccatttgcc attgggcagc cgcctgctca tgtaaagatc tttgccaccc
      841 tgcccgccgg gccggttgct gctgaagtac aggatttgct tgtcggggct cagcgtaggg
      901 ctgctttccc aatactcggt gttgatgttc tcgccgaggt tgaagggttc gctccagcct
      961 tgtggcgtgg catagcagat gtacagatcg aaatcgccaa agccaagccc gccgtaatta
     1021 cctgcgaaaa tgagccactc cccatcctgc gaaatcatca gcccgccttt ggaaggttca
     1081 tcgttcaatt ggcccgccag cttcgaagct ttgctgtaag attgatcctt tttactggcg
     1141 ctgtaaaaat cttcgcgtat gccatcgccc cgacgggtga acaccatcag gctatcgttg
     1201 atggtgaagg atgggtagta ttcactgcga ctggagttga tgctgtcgcc caggttctcg
     1261 ggttgaaatt tcgcagcatc agcagcatgg gcggcagcaa actgttgcgc aaactggtag
     1321 caacgcaggc ggtattcccc ggccttcaca ctccggggat ccaggcgagg gagtgccagg
     1381 aattgttgta ctgccttgcc ggcatcctca aaacgcccca tgcctgccag gttgatggaa
     1441 tacgacaatt tcatatccgc cgtgtacaca ctgtcgaggc tgaatgattt ttcataatac
     1501 atcacagcac tgtcgtattg cttcatttgc ccgcaggccc cggccaggct cagccaggcg
     1561 tcaacaaatt tgggatcgag tttgagggca gcatggagca gttttttgcc cgcctccatt
     1621 tgcccgtccc tgagttggtc gattgctcct gagtatatga actgtgcctt cttgttcact
     1681 ttctcgggat cgtaccattg cgagaagccg gtgccgcata gcatcagggc aaagagaacg
     1741 gaggttatgt aacagctttt catctatttt cgactattgc aaggaaatta ggctcttttc
     1801 cgataccgcc acgctcaggc cttcactctc ttcatttttt tcacagaaag caaactattg
     1861 ctcatcttcc cagtctaatc ctattttaat tattgtttat ggacaggcgt gattttttag
     1921 ctgttggcaa acctgcaggt aataccacag gagcagttgg cctcaaaaag caggaaccag
     1981 cccggcaaaa agaatatacc ccccgggtgc aatcgggcat caacccgtac aagcaaacgc
     2041 tggccgaaga cgacctgatc catttgctga agcgtaccct ttttggtgcc tcccctgccg
     2101 acgtcaattt tttcaagggc aaatcgctgg accaggtggt aaatgaattg cttaccatta
     2161 cgggcaccac tactacggtg acggtaaaaa cctatacacc cggcgccact acacccgcca
     2221 acgatcccga tcaatcattg gccgctggcc aaccctgggt aaccgtgcat accaatgacg
     2281 gttcagtcaa cgccagccgc agggcttcgt taaaagcctg gtggatgggc caattggtaa
     2341 accagtcgag gaatgtccag gagaaaatgg tgctgttctg gcaccaccat tttgctgccg
     2401 aaaccgcaga catcggcaat ggtattgcat gctacctgta caacaagacg ctgcgccaat
     2461 atgctttggg caatttcaaa gcctttgtaa aagcaataac gcttgagccc ggaatgctgc
     2521 ggtatctcaa cggggaacga aacctcaaga gtgcaccaga cgaaaactat gcccgggagt
     2581 tgcaggaact gtttaccgtg ggaaaaggct cgggcagcaa gtacacggaa gatgatgtga
     2641 aacaggcagc aagggttctc accggtttcc gggtcaatta tgccaatatc acttcttatt
     2701 ttgatgccaa ccaacatgac accggcagca aaacattcag tgctttctat ggcggcaaaa
     2761 ccattaccgg taaaacaggc gccgccggtg ccggggaatt ggatgaacta ttggacatga
     2821 tttttgctac acaggaagtg gcaaaacata ttgtgcggaa catctaccgc tggtttgtgt
     2881 attacgaaat tgatacacaa gtggagcagg atgtgattgc gccgttggcc aatattttcc
     2941 gcagcagtaa ttacgacatc aaagccctga tgaccgcgtt gctcaaaagc gaacatttct
     3001 tcgacccatt gaaccgtggt tgccaaatca aaagccccat cgacctggtg gtaggaggcg
     3061 ttcgtgagtt tggaacggtt ttcccggcgg caactgatta tgcaaccaac tacctgatgt
     3121 ggtcgtggct gcaaaccaac gctgccaata tgcaacagaa cattggtgat ccgcccgatg
     3181 tcagcgggtg gaaagcctat taccaggaac cactttttta tgaaatatgg atcaacagtg
     3241 atacgctgcc caagcgcaat cagtataccg atacgatgat cattaacggg tatacccgca
     3301 acagcattac cattcgtttc gatgccattg aatttgccaa agggatgtcg aagccgggtg
     3361 atccgaacct gttgctggct gatgttttga aatacctgta tcgcatttcc ctgagtgccg
     3421 ccactattgc tcaaatcaaa aaagac
//
LOCUS       DATIQF010000841         2559 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_120044,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000841 DATIQF010000000
VERSION     DATIQF010000841.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2559
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120044"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2233)
                     /locus_tag="VLL95_14425"
     CDS             complement(<1..2233)
                     /locus_tag="VLL95_14425"
                     /inference="COORDINATES: protein motif:HMM:NF009397.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase/topoisomerase IV subunit A"
                     /protein_id="HSR40104.1"
                     /translation="MAPFDPVKNSDNETTGVSDLYQNWFLDYASYVILERAVPAVEDG
                     LKPVQRRILHAMKEMDDGRYNKVANIVGQSMQYHPHGDMSITDALVNMGQKDLLIDTQ
                     GNWGDVRTGDDAAASRYIEARLSKFALEVAFNAKTTEWQLSYDGRKQEPVTLPMKFPL
                     LLAQGADGIAVGLSTKILPHNFIELCEAAIKYLKGRKFELYPDFQTGGQIDVSNYNDG
                     KRGGKVRVRARIEELDKKTLVIHDVPYGVTVSSLIDSITKAAEAKKIQVKKVTDVTAA
                     EVRILVELPPGASPDITIDALYAFTDCEVSISPNACVIIDQKPRFVTATDLLSWSTEH
                     TKELLKRELEIKLAELNEKWHYTSLEKIFFEEKIYKELEKKHETWEKVLQAIDKGFAP
                     FKPKLKRDITRDDIVKLTEKPVRRIYKLDIDELDAQIKSIEGDIKQVEFDLAHLTEFA
                     VKYFENLISKFGKGRERKTEIRLFDTIQVRQVAVANAKLYVNRSEGFIGTGLKKDEFV
                     ADCSDLDDVICITRRGIMKVVKVSDKAFIGKDIIHVAVFNKNDDRTTYNMIYVDGKSG
                     VSFAKRFQVGGVTRDKEYDLTKGTDKSRVHYLTVNANGEAEVVRVNLSPTCSARIKEF
                     EFYFEELAIKGRGSLGNQVTKYPIKSVRFKEAGRSTLEGRRLWYDDQFGRLNTDEKGM
                     YLGMFEGDDKILVVYSDGNYEITDQELTQRFEADDVLLIERFDPERTISAIYYDADKL
                     QFNI"
     gene            complement(2257..>2559)
                     /locus_tag="VLL95_14430"
     CDS             complement(2257..>2559)
                     /locus_tag="VLL95_14430"
                     /inference="COORDINATES: protein motif:HMM:NF023812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3658 domain-containing protein"
                     /protein_id="HSR40105.1"
                     /translation="MVRLLEGGKKLGQAEEDYYDKALAKYVYGDFAKGQKIIAQFLAK
                     EKENTGDVFLTWRLKQLIEPNGWEVKGDLGKSTKDFELRNPTMPSLKKKQEAETEE"
BASE COUNT          548 a          686 c          569 g          756 t
ORIGIN      
        1 tgatgttgaa ctgcaatttg tcggcatcgt aataaatggc cgagatggtt ctttccggat
       61 caaatctttc gatcagtaaa acatcatctg cctcaaaacg ctgtgtcagt tcctggtcgg
      121 ttatttcgta attgccatcg ctgtacacca ccagtatttt gtcgtctcct tcaaacatgc
      181 cgaggtacat gcctttttcg tcggtgttca gacggccaaa ctgatcgtcg taccaaagac
      241 gacggccttc cagcgtagag cgaccggctt ctttaaaccg taccgatttg atgggatact
      301 tggtaacctg gttgcccaaa ctgccgcggc ctttgatggc cagctcttca aagtaaaatt
      361 caaattcctt gatacgggct gagcaggttg ggctgagatt cactcttacc acttcagctt
      421 ctccattggc attcaccgtg aggtaatgca cccggctctt atctgttcct tttgtgagat
      481 cgtattcctt atcacgggta acacctccta cctggaatcg cttggcaaaa ctcacgccac
      541 tttttccatc cacatagatc atgttgtagg tagtacgatc atcgttctta ttgaagaccg
      601 ctacgtgtat gatgtctttg ccaataaatg ccttgtccga cactttcacc accttcatga
      661 tgcccctgcg ggtaatgcaa atgacgtcat ccagatcgga acagtctgct acaaactcat
      721 ctttcttcaa accggttccg atgaagcctt cgctgcggtt gacatacaat ttggcattgg
      781 ccaccgctac ctggcgcacc tggatggtgt cgaacaaacg gatctctgtt ttgcgctccc
      841 tgccttttcc aaatttgctg atgaggttct cgaagtactt cactgcaaac tcggtgagat
      901 gggccaaatc aaattccact tgtttgatat cgccctcaat agatttgatc tgcgcatcca
      961 actcatcaat gtcgagtttg taaatgcggc gcaccggttt ttcggtgagc ttcacaatat
     1021 cgtcgcgggt gatgtcacgc ttcagtttgg gcttaaaggg cgcaaagcct ttgtcgatgg
     1081 cctgcagtac cttctcccag gtttcatgct tcttctccag ttccttgtat atcttttctt
     1141 cgaagaagat tttttccagc gaagtgtaat gccatttttc gttcagctcg gccagcttta
     1201 tttccagttc gcgtttcagc agttctttgg tatgctcggt actccaactg agcaaatctg
     1261 tcgccgtcac aaagcgtggc ttctgatcga tgatcacgca agcattggga gaaatgctca
     1321 cttcgcaatc ggtaaaggca tacaaagcat caatggtgat gtctggcgaa gcccccggag
     1381 gcagttccac caatatccgc acttccgcgg ccgttacatc cgtcaccttt tttacctgga
     1441 tcttctttgc ctccgcggct ttggtgatgg aatcaataag gctgctcaca gtgacaccat
     1501 acggcacatc atgaatgacc agggtctttt tgtcgagctc ttcaatccgg gcacgcaccc
     1561 gcaccttgcc gccgcgtttg ccatcattgt aattgcttac atctatttga ccgccggttt
     1621 gaaaatcggg atagagttca aattttcttc ccttcaggta tttgatggcg gcctcgcaca
     1681 actcaataaa gttgtggggc aaaattttcg tactcaatcc taccgcgatg ccatcagcac
     1741 cctgtgccaa cagcaatggg aatttcatgg gcagggtaac cggctcctgc ttacggccat
     1801 catagctcaa ttgccattcg gtggttttgg cattgaaagc cacttccagc gcaaacttgc
     1861 tgaggcgggc ttcaatgtaa cgggaggccg ctgcatcatc gcctgtgcgt acatcgcccc
     1921 agttgccctg tgtgtctatc agcaggtctt tttgccccat gttcaccaat gcgtcggtga
     1981 tactcatgtc gccatgcggg tgatactgca tgctctgccc cacaatgttg gccactttgt
     2041 tgtagcggcc gtcgtccatt tctttcatgg cgtgcaaaat gcggcgctgc acaggcttca
     2101 ggccatcttc caccgcaggc acggcacgct ccaatatcac atacgatgcg tagtcgagaa
     2161 accaattctg gtagaggtcg cttacgccag tggtttcatt gtcactattc ttaaccggat
     2221 caaatggtgc cataatcttt caaaataatt cgctttctat tcttctgttt ctgcttcctg
     2281 tttctttttg agcgaaggca tggtaggatt gcgcaattca aaatctttag tggatttgcc
     2341 gaggtcgcct ttcacctccc agccattcgg ttctatcaat tgcttcaatc gccaggtgag
     2401 gaatacatca ccagtgttct ctttttcttt ggccagaaac tgggcaatga tcttttggcc
     2461 tttggcaaag tcgccgtaca cgtatttcgc cagcgctttg tcgtagtaat cctcttcggc
     2521 ttgtcccagc tttttgccgc cttccagcag gcgcaccat
//
LOCUS       DATIQF010000842         8149 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_150446,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000842 DATIQF010000000
VERSION     DATIQF010000842.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8149
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150446"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1794)
                     /locus_tag="VLL95_14435"
     CDS             complement(<1..1794)
                     /locus_tag="VLL95_14435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40106.1"
                     /translation="MKNPPIGKPYVYENKVSLNAPLLSKEKQAIFREKLLEYLDDSLK
                     VPTRSIMGFSQRVRPPLFDSVNIANSIRFMFGYLNSEGYYNSSLDTFTVRIDTTRRKT
                     KFFGGKKVQVIEAKTHFFLKVGKGLRLDSIWNSFSNPELQRLADSARKTSTLTKNSYY
                     SKQAVAIELDRLATIFRNNGYMLMNRSALLAEADTADLSLISLFDDPIQQQLAALKRQ
                     QDPTATLRFFERPGTDSMLFRKYLIDSVYIYPETRISDNVDSLISSTQFNQLSNPRSR
                     VVIKELENQFQEKMLRRTNYLQPGQIYTDRQFFRTLNNYSQMGPWQQVDVRTSTRKDS
                     VAEAIFHLFLYPAKRQNFQIDLEGSQNNNISVGNVLSGRFLAVGVAGTHRNRNVMKRG
                     TQSVTTLRTGLELNNSASSGNEGLFQTLIVGGNQSFSIPRLLWPMNFLDKRSLDFRRT
                     AVNFGGVYTDRFDFFKQTSINFNLQWDVRKGKNTFSFSFPTFETVDTVSTDSLYKEIV
                     ANPALAYSFTPGNVLSVRGSWERVLEYSNRRHSGLFRTSAEVTVPGNFTLFGKEFFKF
                     FRMEGLFIHGIRFSKTSLAMRMFGGVGWDISG"
     gene            1905..2648
                     /locus_tag="VLL95_14440"
     CDS             1905..2648
                     /locus_tag="VLL95_14440"
                     /inference="COORDINATES: protein motif:HMM:NF012797.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HSR40107.1"
                     /translation="MPTVSQFKLIQSLKDKKRREEQGLFVAEGIKVVQELLHSTGFPI
                     QKLYFTSGSGIEQDLAKMPVALQELVSEKDMERMSLLQTPGSVLALVKQPSYSFSGFP
                     EKQWSLLLDGIQDPGNLGTIIRLADWFGINNIFATPDTADCFGPKVVQASMGSLFRVK
                     VTYGACNLWLQEARVPIYGTAMQGRSIWQQQQVPPGVLVIGNEGKGIRDEVGTHISTV
                     FSIPRLGQAESLNAGVATGIILSHLLATK"
     gene            complement(2660..3889)
                     /locus_tag="VLL95_14445"
     CDS             complement(2660..3889)
                     /locus_tag="VLL95_14445"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSR40108.1"
                     /translation="MQVSLFIARRIIHNQQPSFSRFIIRAAAIATAISVATMIVTLSM
                     VNGFQHEVAEKVFSYWGHTRVQNLEPYRTLVAEETPITQTDSLDKVVKATPGIAHVHA
                     FGARSIVLRSRVQFEGVLLKGVSGSFVESPFSRFIRQGSNISFADTSYSRQVLLSQAM
                     ARRLDVAVGDTLNAFYLRQGEDIRSRSMTVVGLYQTGIEEYDNQFAIADLRFLQRLNQ
                     WDSTQIGGYEIWLNKPAMANEWSEALTENLPQGIISVPITQVYPNIFDWLGIQDQTKR
                     IVIGVMLAVAIINLVTCLLILVMERTRMIALLTAMGMTGIEIRKLFWYYAAWIAGVGV
                     LAGLALGLGVSFLQLLTGIIKMDEATYYVDQMPVKIEWWQVLAVAAGSFSVCLLALRL
                     PLAFIRRISIIKAIRFN"
     gene            3987..5282
                     /locus_tag="VLL95_14450"
     CDS             3987..5282
                     /locus_tag="VLL95_14450"
                     /inference="COORDINATES: protein motif:HMM:NF028426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5103 domain-containing protein"
                     /protein_id="HSR40109.1"
                     /translation="MKLVGRIISLLLFAINTLDAQVPLQEELRSPHVVAVKLFRKPDQ
                     QAFPIVKLGETDALELHFDDLQNSARTYYYSYVLCNADWTPANLSTMDYIRGFSQMRL
                     TLYRFSSGTMSRYVHYSASLPAANIMPSRSGNYLLKVFENGDTSRLLFSRKILVVDEK
                     ASVAVRMQQPFAQENFLTHQKVIADVVFRNMEILNPAREVKLVVMQNNRWDNARLISN
                     PTFIRGKSFEYSDEVSLVFEGGKEWRWLDLRSYRLQSDRVASVNYNKTPYDVFVRVDT
                     ARSPMRYFYFPDANGRYVIANLENVNPFWQSDIARVHFTFLPQEPEKFRNVDVFLFGE
                     MTGFQMNNKTKMEWNENLQAYQASVMLKNGFYNYTYVTRPQNNPNAPGSLFLTDGSRW
                     EAENDYRILVYFTPFGSRSDELVGIAEVNSMNYFNPGRR"
     gene            complement(5330..5986)
                     /gene="fsa"
                     /locus_tag="VLL95_14455"
     CDS             complement(5330..5986)
                     /gene="fsa"
                     /locus_tag="VLL95_14455"
                     /inference="COORDINATES: protein motif:HMM:TIGR00875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HSR40110.1"
                     /translation="MKFFIDTANLAQIKEANDLGILDGVTTNPSLMAQVGVKGEEAIM
                     NHYKTICEIVDGDVSAEVFSTDFEGIVAEGQKLAAIHPNIVVKVPMIKDGIKALKWFS
                     DNNIKTNCTLVFSAGQAILAAKAGANYVSPFIGRIDDSGWDGMELISQISNIYAIQGF
                     KTEILAASIRNANHIIRAAEAGADVCTCPLDSILGLLKHPLTDIGLAKFLEDAKKTQA
                     "
     gene            complement(6062..6161)
                     /gene="ffs"
                     /locus_tag="VLL95_14460"
     ncRNA           complement(6062..6161)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VLL95_14460"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            6299..7084
                     /locus_tag="VLL95_14465"
     CDS             6299..7084
                     /locus_tag="VLL95_14465"
                     /inference="COORDINATES: protein motif:HMM:NF013882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HSR40111.1"
                     /translation="MEYAKAKKAAFKALNQFFDHVYVITIQKADDRRAKLLPLLEGLS
                     YEFFYGMDKNILQDDNAFLNEVYNDAKSRRLNRYGNAMTIGHVACSFSHCMVYKDMLD
                     RGFDRVLILEDDVVPMETAIHHIYDVLQSLPENWEILYWGYDRHDKWNMASRFKQGLY
                     HLTSALGLLKWNHTMIRNLHARPYTKYLHKAGSHDLSHAYGISKSGAKKMLEIQTPVV
                     FNADTAMAYGIANGWIKGFISKPIVFKQEFEVSPHQYVSMIKD"
     gene            complement(7094..7888)
                     /locus_tag="VLL95_14470"
     CDS             complement(7094..7888)
                     /locus_tag="VLL95_14470"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HSR40112.1"
                     /translation="MSISSISKYTELAKQVSNWPRYFFFKFWGNDSEASFWLKKSGAK
                     IIVPFTMLRVFKEVFMQNGYNFQFVSKHLKSGATVLDIGANIGMFSTWIANHFPNQPI
                     VAYEPLPGNVEYLRRNLLSPKSVFTNCVVAEKAVTGKRAESVTFFCNKEKPQSDSASA
                     IQGFYNNYDSIEVPAISLSEIISQTANRIGLIKIDCEGSEYDILYNTPASDFAKVDTM
                     IIETHDLDENENNFRGVCSFLEKTGFSYTSETVDHGLHLIWATHKK"
     gene            complement(7915..>8149)
                     /locus_tag="VLL95_14475"
     CDS             complement(7915..>8149)
                     /locus_tag="VLL95_14475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40113.1"
                     /translation="RPEHKAQMIRFSEIAARAMHEKGKRVGAAKPFLSAAWAFVNGFI
                     LKAGFLDGINGFHIAVMNSFYSFRKYTLLRSCY"
BASE COUNT         2146 a         1895 c         1951 g         2157 t
ORIGIN      
        1 gccgctgata tcccagccta caccgccaaa cattcgcatg gccagcgagg ttttagaaaa
       61 ccggatgccg tgaatgaaca gtccttccat cctgaaaaat ttgaagaact ctttgccaaa
      121 caaggtgaag ttgccgggca ccgttacttc ggcagaggtg cgaaacaaac ctgaatgtct
      181 ccggttgctg tattcgagca ctcgctccca acttcctctt acactcagca cattacccgg
      241 ggtaaaggaa taagccaaag ctgggtttgc aacaatctct ttgtaaagac tatcggtgga
      301 tacagtgtct accgtttcaa aagtcgggaa cgagaaactg aaagtgttct tccctttcct
      361 tacatcccac tgtaaattga agttgataga agtctgcttg aaaaaatcaa aacggtcggt
      421 gtaaacaccg ccgaagttta cagcagttct gcgaaaatca agtgatcgct tgtccaggaa
      481 attcattggc cacaacagcc ttggaatgga aaaactttga ttaccaccaa cgataagcgt
      541 ttgaaaaagc ccctcattgc ccgaagatgc gctgttgttt aattcaaggc ctgtgcgtaa
      601 tgtggtgacg ctttgggtac ctctcttcat cacattcctg ttgcggtggg tacctgccac
      661 ccctactgcc aggaatcgtc ctgacaaaac attgcccacc gaaatattgt tgttttggct
      721 gccctccagg tctatttgga aattctgtct tttggccggg tacaggaaca aatgaaaaat
      781 tgcctccgcc acactgtctt tccgggtcga ggttcgcacg tccacctgtt gccagggtcc
      841 catttgtgag tagttgttca aggtgcggaa aaactgccga tcagtgtaga tttgacctgg
      901 ttgcaagtaa ttggtgcggc gcagcatctt ctcctggaat tgattttcca attctttgat
      961 cactactctc gaccggggat tgctcagttg attgaactgt gtcgagctaa tgaggctgtc
     1021 gacattgtca gaaatcctgg tttcgggata gatatacaca ctgtcgatca aatactttct
     1081 gaacaacatg gaatcggttc ccgggcgctc aaagaaccgg agtgttgcag ttggatcctg
     1141 ttgtcttttc aaggcagcga gttgttgctg tatgggatca tcaaacaggg atatcaggct
     1201 gaggtcggca gtatctgctt ctgcaagcag ggctgacctg ttcattagca tgtatccatt
     1261 gtttctgaaa atggtggcaa gacggtcgag ctcaatagcc accgcttgtt tgctgtaata
     1321 agagtttttt gtgagtgtgg acgttttacg ggcactgtcc gcgagacgct gcagttcagg
     1381 attggaaaaa ctattccaga tgctgtccaa tcgaagccct tttcccactt tcaggaaaaa
     1441 atgcgttttg gcttcaatca cctgcacctt cttaccgccg aagaattttg ttttgcggcg
     1501 ggtcgtgtca atccttacgg taaatgtgtc gagactggaa ttgtaatacc cttcgctgtt
     1561 caggtatcca aacatgaagc ggatactgtt ggcaatattg actgaatcga aaagcggtgg
     1621 cctgacccgc tgcgaaaatc ccatgatact gcgtgttggc accttcaggc tgtcatcaag
     1681 gtattccagc agcttttcgc gaaagatggc ttgcttttct ttggaaagca atggcgcatt
     1741 cagcgatact ttgttttcgt aaacataagg cttgccaatg ggaggattct tcacagctac
     1801 acaaccccac attgcccaca agcaaagcag ggtcaaaaag tggagtttac gtgttggtgg
     1861 tgtaagttcg ctgcgattct ttaaatgcat ccaattgcaa tattatgcct actgtttctc
     1921 aatttaagct gatacaaagt ttaaaggaca aaaaacgccg cgaagagcaa gggctgtttg
     1981 tagcggaagg catcaaagtg gtgcaggaat tgctccatag tacaggcttc cccatccaaa
     2041 aattatattt cacatcagga tcgggcattg aacaggactt ggccaaaatg ccggtggctt
     2101 tgcaggaact ggtttcggag aaggatatgg aaagaatgag tttgctgcag acgcccggtt
     2161 ctgtattggc cctggtaaag cagccctcct attccttcag cggttttcct gaaaaacaat
     2221 ggagcctgct gcttgatggc attcaggacc ccggcaattt gggaaccata atccggcttg
     2281 ccgattggtt cgggataaac aacatttttg ccacgcccga tacagctgat tgtttcggcc
     2341 ccaaggtggt gcaggcctcc atgggcagcc ttttcagggt aaaggtcacc tacggcgcct
     2401 gtaacttgtg gctgcaggaa gcaagggtgc caatttatgg cactgccatg cagggcagga
     2461 gcatttggca acagcaacag gtgcctccgg gtgtactggt cattggcaac gagggcaaag
     2521 gcattcgcga tgaagtgggt acacacatca gtacagtatt cagtatcccc aggttggggc
     2581 aggctgaaag cctgaatgca ggtgtggcca ccggcattat cctttcccat ttactggcca
     2641 cgaaataatg aaggcctgat cagttgaacc tgatggcttt gataatggat atgcggcgaa
     2701 taaaggccaa tggcaaacga agggccagca ggcaaacgct gaaacttcct gctgccacag
     2761 caagcacctg ccaccactca attttgaccg gcatttggtc cacgtaataa gtggcttcat
     2821 ccattttaat gatgcccgtg agtagttgta aaaatgatac accaaggcca agcgccaatc
     2881 cggccaaaac accaaccccc gcaatccatg ccgcgtaata ccaaaagagt ttcctgatct
     2941 cgatgccggt catgcccatg gcagtaagca gggcgatcat ccgggtgcgc tccatcacca
     3001 atatcaaaag gcacgtgacc aggttgatga tggctacggc cagcatgaca ccaataacaa
     3061 tgcgtttggt ttggtcctgt atgcccagcc agtcgaagat gttggggtaa acctgggtta
     3121 ttggaacact tatgattccc tgtggtagat tctccgttaa tgcttcgctc cattcattag
     3181 ccatggccgg cttgttcagc caaatttcat agccgccaat ctgggttgag tcccattgat
     3241 tgaggcgttg caaaaatcga agatcggcga tggcaaactg gttgtcgtat tcttcaatgc
     3301 cggtttggta caagccaacc accgtcatgg aacgtgatcg gatgtcttcg ccctggcgca
     3361 ggtaaaatgc attcaacgta tctcccactg ctacatccag gcgcctggcc atcgcctggc
     3421 tgagcaacac ctgccggctg taactggtat cagcaaaact gatattacta ccctgccgaa
     3481 tgaatcggga aaagggactt tctacaaaag atccggaaac ccctttcaac aatactcctt
     3541 caaactggac ccggctgcgc aatacgatgg aacgggctcc gaatgcatgt acatgagcaa
     3601 taccaggagt tgccttcacc actttgtcca gcgaatcagt ttgggttata ggggtttctt
     3661 cagctaccaa tgtgcggtag ggctccaggt tctgtacccg ggtgtggccc caatagctga
     3721 atactttttc ggctacctca tgctgaaacc catttaccat gctcagggtc acaatcatgg
     3781 tagccacact gatggctgtg gcgatagcag ccgcccttat gatgaaccgg gaaaaggaag
     3841 gctgctggtt atggataatt ctgcgggcaa taaacagact tacttgcaag tgctgacgtt
     3901 attgttcaaa gaaaagcaat tgttggctac agcccggggt atgttctgtc aacagttttc
     3961 accaaaaccc ttactttgtt attatcatga aattagtcgg tcgcattatc agcctgttat
     4021 tgtttgccat caatacgctt gatgcccagg tgccgttgca ggaagaattg aggtctccgc
     4081 atgtggtggc ggtgaaactc tttagaaaac cggatcagca ggcatttccc attgtgaaac
     4141 tgggtgagac agatgcgttg gaactgcatt ttgacgacct gcaaaacagt gcccgtacct
     4201 attactattc ctatgtgctc tgtaatgcgg actggacacc tgccaacctg agtacgatgg
     4261 attacatcag gggtttttcg cagatgaggc ttaccctgta tcgcttctct tcaggcacca
     4321 tgagccgtta tgtgcattac agtgccagcc tcccggccgc caatatcatg ccatcccgtt
     4381 caggcaacta cctgctgaag gtgttcgaaa atggcgacac ttcacgcctc ctgttttccc
     4441 gcaaaattct ggttgttgat gagaaagcca gtgtggcagt gcgcatgcag caaccctttg
     4501 cgcaggaaaa cttcctcacc catcagaagg tgatagcaga tgttgtgttt agaaacatgg
     4561 aaatactcaa ccctgccagg gaggtgaaac tggtagtaat gcaaaacaac cgatgggaca
     4621 atgcgagatt gatctccaat cccacattta ttcggggcaa aagctttgaa tacagtgatg
     4681 aagtttcgct ggtgtttgaa ggcggaaagg aatggcgctg gctcgacctc aggagttacc
     4741 gcctccaaag cgaccgggtg gccagcgtca attataacaa gacaccttat gatgtctttg
     4801 taagggtgga tacggcacga agtcccatga gatactttta tttccccgat gccaacggcc
     4861 gatacgtaat tgccaacctt gaaaatgtga accctttttg gcaaagcgat attgcccggg
     4921 tgcattttac atttctgccg caggagcctg aaaagttcag gaatgtggac gtttttctat
     4981 tcggggaaat gaccggtttt caaatgaata acaaaacaaa gatggagtgg aatgaaaacc
     5041 tgcaggccta ccaggccagt gtcatgctta aaaacgggtt ttacaattat acttatgtca
     5101 cccggcccca aaacaatccc aatgcaccag ggtccttgtt tctgaccgat ggcagccgtt
     5161 gggaagccga aaatgattac cgcatcctgg tttatttcac cccatttggc agccgtagcg
     5221 atgaactggt gggaattgcg gaagtaaaca gcatgaacta tttcaatcct gggcggagat
     5281 aaaaaaaggc actcccaggg aatgcctttt taatacaatc aaacaggttt taagcctggg
     5341 tctttttggc atcttccagg aattttgcca ggccaatatc ggtaagcgga tgcttcagca
     5401 agccaagaat gctgtcaagc gggcaggtac acacatcggc accggcttct gcagccctga
     5461 tgatgtggtt ggcattgcga atggaagcag caaggatttc tgttttgaac ccctggatgg
     5521 cgtagatgtt actgatctgg ctgatcagtt ccatgccatc ccagccactg tcatcaatgc
     5581 ggccaatgaa aggagacaca tagttggcgc cggcctttgc ggccaaaata gcctgaccgg
     5641 cactgaaaac cagggtgcag ttggtcttaa tgttgttgtc ggaaaaccat ttcaacgctt
     5701 tgatgccatc tttgatcatg ggtactttta ccacaatgtt gggatgaatg gctgcgagtt
     5761 tctggccttc ggccacaatg ccttcaaaat cggtgctgaa tacttccgca cttacatcgc
     5821 catctacaat ttcacaaatg gttttgtagt gattcataat ggcttcttca ccttttacgc
     5881 ccacctgcgc catgagcgaa ggattggtgg taacgccatc gagaattccc aggtcatttg
     5941 cttctttgat ctgtgcaagg tttgcggtat caataaaaaa cttcatggaa tgtgatactt
     6001 aaatgaggca caaagaaacg gaattgcctt aaaagacaat gcccctttta aggggcaaaa
     6061 aaagtggcag gctgagtaca tcgcaccgct acgaccgcct acccttgcta ccttccggtc
     6121 ctgggggagt tcagcaggag ctggccgtgt acgacctgcc gctgcaaatg taggggaata
     6181 ccaataattg ttgagtgcca tttttctttg gccaaattgg tagttgggag cttgcagtgg
     6241 ccaacttatt tttaccgcca cgggattcgt aatcttgtgt caattccttt catggtttat
     6301 ggagtacgca aaagctaaaa aggcagcatt taaggcactc aaccagtttt tcgatcatgt
     6361 atatgtcatc accatacaaa aagctgatga cagaagggca aagcttttgc cgctattgga
     6421 ggggttgtcc tacgagtttt tctatgggat ggacaaaaat attctgcagg acgataatgc
     6481 ctttttgaac gaagtgtaca acgatgccaa gtcgcgccgg cttaatcggt atggtaatgc
     6541 tatgaccatt ggccatgtgg catgctcttt cagtcactgc atggtatata aggatatgct
     6601 ggaccgcggg tttgatagag tattgatttt ggaagatgat gtagtgccga tggaaactgc
     6661 cattcaccac atttacgatg tgcttcagtc tttgcctgaa aattgggaaa tactttattg
     6721 gggatacgac aggcacgaca agtggaatat ggccagccga ttcaagcaag ggctatacca
     6781 tcttaccagt gccctcggcc tgctgaaatg gaaccatacc atgatcagga atttgcatgc
     6841 caggccttat acaaagtatt tgcacaaagc cggcagccac gatctgtcgc atgcttatgg
     6901 catatccaaa tcgggtgcca aaaaaatgct ggaaatacaa acgcccgtag tgtttaacgc
     6961 tgatacagcc atggcttatg gaattgccaa tggatggata aaaggcttta tttcaaaacc
     7021 cattgttttt aaacaggaat ttgaagtaag ccctcatcaa tacgtgtcga tgatcaaaga
     7081 ctaaaagccg ttttcatttt ttgtgcgtgg cccaaatcaa atgaagtcca tggtccactg
     7141 tttccgaggt ataggaaaac ccagtcttct ccagaaatga acacacaccc ctgaaattgt
     7201 tttcattttc atccaggtca tgtgtttcaa tgatcatggt atccaccttg gcaaaatcac
     7261 tggcaggggt attgtacaaa atatcgtact cgcttccttc gcaatcaatt tttatgagcc
     7321 caatcctgtt tgcggtttga ctaataattt cggaaagaga aatggcaggc acttctatac
     7381 tgtcatagtt gttataaaac ccttgaatcg ctgaggcaga atcagactgc ggcttttctt
     7441 tgttacaaaa gaaggtaaca ctctccgccc gtttaccagt tactgctttt tctgccacca
     7501 cgcaattggt aaatacactt tttggggaaa gcaggttcct gcgcaaatat tcaacattgc
     7561 cgggtagtgg ttcataggct acaatgggtt ggttgggaaa gtgattggca atccaggtac
     7621 taaacatccc gatattggca ccaatgtcaa gaactgtggc tcccgattta agatgcttgg
     7681 agacgaattg gaagttgtaa ccattttgca taaaaacttc cttgaacact cgcagcatgg
     7741 taaatggaac aattatttta gccccgcttt ttttcaacca gaaactggct tcactgtcat
     7801 ttccccaaaa cttgaagaaa aaatagcgag gccaattgct cacttgtttc gccagttcag
     7861 tgtacttgct gatgctgcta atactcatat tcgtaatata attacaaaaa ggctttagta
     7921 gcaggacctg agcaaagtat attttctgaa agaataaaat gaattcatca cagcaatgtg
     7981 aaaaccgtta attccgtcaa ggaagccggc ttttaaaata aagccgttca caaatgccca
     8041 ggccgcactc aaaaatggtt tggccgctcc tactcttttt cccttttcat gcatggccct
     8101 ggccgctatt tcgctaaaac ggatcatttg ggccttgtgt tcggggcgg
//
LOCUS       DATIQF010000843         2142 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_74108, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000843 DATIQF010000000
VERSION     DATIQF010000843.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74108"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(266..922)
                     /locus_tag="VLL95_14480"
     CDS             complement(266..922)
                     /locus_tag="VLL95_14480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40114.1"
                     /translation="MKKRMVWMMKVALIIVLAGCAFGKKMTFENKEIDAGNTVYKPVA
                     VVFHDQRPEVLSGREKPSYCGHSNSTGQIGYNIQTASGKPLATEFTNALVASLTKRQI
                     TAEAIMATHTQPANSILLAFKNGKMERLLYFTISLWDATMRPKFSTIEYEVVYDLDLK
                     VYDREGTMLANGHGKNFWRVEDPDLATSNNKLQRYADSVFVREIRSLLKDPKVQESVK
                     "
     gene            complement(1274..1960)
                     /locus_tag="VLL95_14485"
     CDS             complement(1274..1960)
                     /locus_tag="VLL95_14485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40115.1"
                     /translation="MKKATLRRIAICLLLAQMTGFAIAQQTKPWSVRRAYINFSAALN
                     DGSTAQLNLHFNNRWVGFIGHDVGHPKSKNLPKNYIPGRGSFLGIEWENAVPTDEYSV
                     VTLGLGRVLTAPSDKAWVIGTCAISAGRYNELQFTPQRMDSYYIWIAGGTNSNYRDTA
                     SFKTMVGIAPGIEAHANLFRFMAVSAGAKMHISTAGFFPRFQIGFDIGLMRPSRKNMI
                     RKDGSVVPAQ"
BASE COUNT          532 a          535 c          483 g          592 t
ORIGIN      
        1 actcttctat tctgcactgg tcccttcctt cgatcgccac ctaatgctat tatggcgcaa
       61 ttgtcgttcc gaaggcatgt ctcttgtgtc ctacaattcc gccggactgt gtccggcacc
      121 gcaggtatta tacattatcc acttttcgcc atttacaaag tcaaagccct atctcctggt
      181 ttgtacggcg caatacaaac atgcgaagtt ttagtcttgc taacgcaact ataacggttc
      241 cggattggca atcctgaacc gcaagttatt tcacactctc ctgcacctta gggtctttca
      301 gcaaggagcg tatttccctt acaaaaacac tgtcggcgta gcgctgcaat ttattgttgc
      361 tggtagcgag atccggatct tcaaccctcc agaaattttt gccatgccca ttggccagca
      421 tggttccttc ccggtcatac acttttagat ccaggtcata cactacttcg tattcaatgg
      481 tcgagaactt cggccgcatg gtggcatccc agagcgatat ggtgaagtaa agaagacgtt
      541 ccatcttccc atttttgaat gccagcaata tcgaattagc aggctgcgta tgcgttgcca
      601 ttatcgcttc agcagttatc tggcgctttg tgagtgaggc gaccaatgca ttggtaaatt
      661 cggtagccag gggtttgccg ctggcggttt gtatgttata acctatttgc ccggtggagt
      721 tggagtgccc gcaatagctg ggcttctccc tgccgctcag tacttcaggc cgctggtcgt
      781 gaaacaccac cgccactggt ttgtataccg tatttccggc atcaatctcc ttgttttcaa
      841 aagtcatttt cttgccaaag gcacaaccgg ccagcactat tatcagcgcc actttcatca
      901 tccataccat cctctttttc ataactgtgc atttaaaatt caacccaata cataagttac
      961 gaaaaatcat tgctacggcc aatgccattg gtcagttgag tatgccgttg ccttacttcc
     1021 cgcagttcgg gattcaaaat ccgatttgac aacaagcgtg gtatacagga tgtaatcctg
     1081 ttgctgagtg ttcaggatgg ccaatcctgc acagcgggac agataagtga aagcgaggtg
     1141 gattcaatac tatgaaggct ttcgattata acacttgaaa ctgatggtga ttaacgcatc
     1201 attgcgcaat agatcctttt acatggctaa tgaaaatagg cattcctttt tgcttttccc
     1261 ctccaaagga gcactattgc gccggcacaa cgctgccgtc ttttcttatc atattcttcc
     1321 tggaagggcg catcaaacca atatcaaacc caatttgaaa acgaggaaaa aagccggcag
     1381 tgctgatatg cattttggcc ccggccgaaa cagccataaa cctgaacagg ttggcgtgcg
     1441 cctcaatacc aggcgcaata cccaccatgg ttttgaatga agcagtatcc cggtaattgg
     1501 agtttgtgcc acccgctatc caaatataat atgagtccat ccgctgcggg gtaaattgca
     1561 gttcgttgta acggcctgct gatatggcac aagtgccaat aacccaagcc ttatcggaag
     1621 gagcggtcag cacccggccc aggccgaggg tcactacaga gtattcatca gtgggcacag
     1681 cattttccca ttcaataccc aaaaaagaac ccctgcccgg tatgtaattc ttcggcaggt
     1741 ttttactttt tggatgaccc acatcatgac caataaaccc aacccaccgg ttattaaagt
     1801 gcaggttcaa ctgtgcagtg ctgccatcat tgagtgcggc gctgaaattg atataagccc
     1861 tgcgaacact ccagggtttt gtttgctggg caatagcaaa gcctgtcatt tgtgcaagca
     1921 aaaggcatat agcgattcgg cgaagggtag cttttttcat ataatgtctt tttgagggtt
     1981 cggttttgat tgcagtgtga aactaccctt ccgcactggc ggtcaataat tgaatttcgc
     2041 cgggttcgcc tggctgctgg cagtatttgc caattggcaa gtaatgaccg ggggcacaat
     2101 ggcaggaatt acggaattgc gcaaatgcat ctgcggtgaa tg
//
LOCUS       DATIQF010000844         1811 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_150454,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000844 DATIQF010000000
VERSION     DATIQF010000844.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150454"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..344)
                     /locus_tag="VLL95_14490"
     CDS             complement(<1..344)
                     /locus_tag="VLL95_14490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40116.1"
                     /translation="MSAIQKKQLFVASCLALLVTSLSFGIRAGILNELGKQFSLNAAE
                     LSTIAATAFWGFPLAVIIGGMVVDIIGMKKLLVAAFVFHLAGILLTVFAGGFWSLFIS
                     TLLIGIANGTVEA"
     gene            552..>1811
                     /locus_tag="VLL95_14495"
     CDS             552..>1811
                     /locus_tag="VLL95_14495"
                     /inference="COORDINATES: protein motif:HMM:NF012935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HSR40117.1"
                     /translation="MGELQIKKSTKLYDAVIVGSGAGGGMAAYVLANAGLKVCLLEAG
                     PDYDPAKNVNQLKNPWDSPRRGASTRFRPFGDFDASYWGWQIDGEPYTTEKGTSWDWW
                     RARMVGGRTNHWGRISLRFGPKDFKRKSIDGLGDNWPIGYDDVKPYYDKIDQLLGVFG
                     TNEGLENDPDGIFLPPPKPRLHELMLKKAAGSAGVPVIPSRLSILTKKINDKRGACFY
                     CAQCNRGCTVYGDFSSSSVLVKPAIESGNVDLVVNAMAREVLTDREGKATGISYVDKE
                     TLQEYQVNGRVVILAASACESSRLLLNSKSSRHPNGLANSSGVVGRYLHDSTGAGMGG
                     VLPELFDRKRYNEDGVGGMHVYSTWWGDNKKLDFPRGYHIEYWGGMQQPAYGFGWGIE
                     GLNGKFMVKGHQKEAGGYGKSLKEDYHF"
BASE COUNT          497 a          417 c          493 g          404 t
ORIGIN      
        1 gcttcaacgg taccgttggc aataccaatg agcagcgttg aaataaacag tgaccaaaag
       61 ccgccggcaa acaccgtgag cagtatgcct gccaggtgaa acacaaacgc tgccaccagc
      121 agttttttca taccaatgat atctaccacc atgccgccaa tgatcaccgc cagtggaaaa
      181 ccccagaagg cggtagccgc aatggtactg agctcggctg cattcagtga gaattgcttt
      241 cccagttcat tgagaatgcc ggctctgatg ccgaaagaaa gagaggtaac cagcaaggcc
      301 aggcaactgg ctacaaataa ttgcttcttc tgaatggcag acatacgttg tttgattgaa
      361 ggattgacta tcgttggacg ctaaaaatag ggataattga aacccattgc aggtcaagta
      421 tccacagaat ttactgcaaa ccttgccgga gggattacgc ggaaaaatcg tcattcggaa
      481 aatttggatc aatccattgc cggaaatgcg aattgcctac tttagggacc atttcagaag
      541 acacgattgc tatgggagaa ttacaaatca agaaaagcac caagctgtat gatgccgtaa
      601 ttgtgggatc aggcgccgga ggaggcatgg cagcatatgt attggccaat gcaggattga
      661 aagtttgctt actggaagcg gggccagatt atgatcctgc caagaatgtg aaccaattaa
      721 aaaacccctg ggacagtccg cgtcgcggcg ccagcaccag gtttcgtccc tttggcgatt
      781 ttgatgccag ctactgggga tggcaaatag acggcgaacc gtataccact gaaaaaggca
      841 cttcgtggga ctggtggcgg gcccgcatgg taggtggccg taccaaccac tgggggcgta
      901 tctcgctccg ttttggtccc aaagatttca agcgcaagag tatcgacggc ctcggcgaca
      961 actggcccat tggctatgat gatgtaaagc catactacga taaaattgat caattgctgg
     1021 gcgtgtttgg cacgaatgaa ggattggaaa acgatcccga tggaatcttt ttgccaccac
     1081 caaaaccacg cctgcacgaa ctgatgctga agaaggcggc aggctccgca ggagtgcccg
     1141 tcattccttc ccgcttgtct attttgacga aaaagatcaa cgacaaacga ggcgcttgtt
     1201 tctattgcgc ccaatgcaac aggggctgca cagtgtatgg tgatttttct tcttcttctg
     1261 tgttggtgaa gcctgccatt gaaagcggca atgtggacct ggtagtgaat gccatggccc
     1321 gcgaagtgct gacagaccgg gaagggaaag caacaggcat ttcatacgtt gataaagaaa
     1381 ccttgcagga ataccaggta aatggtcgtg ttgtaatact ggccgccagt gcctgcgaaa
     1441 gttcccgctt gttgctcaat tccaaaagtt cccgccaccc caacggtttg gccaacagca
     1501 gtggggtggt agggcgctac ctacacgaca gcaccggggc tggaatgggt ggtgtgttgc
     1561 ccgaattgtt cgatcgcaaa cgctacaatg aagatggtgt gggtggcatg catgtgtaca
     1621 gtacatggtg gggtgataac aagaaactgg atttcccccg cggatatcac attgaatact
     1681 ggggtggcat gcagcaacct gcttacggat tcggatgggg tattgaaggc ctcaacggaa
     1741 aattcatggt gaaggggcac caaaaagaag ccggtggtta tggtaaatca ctgaaggaag
     1801 actaccattt c
//
LOCUS       DATIQF010000845         3044 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_13416, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000845 DATIQF010000000
VERSION     DATIQF010000845.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3044
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13416"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..600
                     /locus_tag="VLL95_14500"
     CDS             <1..600
                     /locus_tag="VLL95_14500"
                     /inference="COORDINATES: protein motif:HMM:NF023380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3471 domain-containing protein"
                     /protein_id="HSR40118.1"
                     /translation="NFSGYGLGLFAGDYNGRQFYWHTGGAAGMVSKVCFVPDEKLGIA
                     ILTNNDNQNFFEALRYQILDAYLGVAYRDRSQMMWPGFQREMQDQLKEISQWKNRVKG
                     TTPPLDWKAYTGQYSNELYGNITVTQKDAQLIVHFEHHPQMTATLQYMDNNEWLMEYS
                     NIEYGIFSTNFSAGKNKVQSLRIPMNPFVELDAYTFVKQ"
     gene            623..1921
                     /locus_tag="VLL95_14505"
     CDS             623..1921
                     /locus_tag="VLL95_14505"
                     /inference="COORDINATES: protein motif:HMM:TIGR01891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSR40119.1"
                     /translation="MRKTMTAAALLGACTAFAQGNTVAINQGSSALQPKLVEWRRHIH
                     QHPELGNREVQTAAYVAAHLRSLGIEVREKVGVTGVVGVLKGGKPGPLVALRADMDAL
                     PVKERVNVPFKSEATSEYNGQTVPVMHACGHDSHVSILMGTAQLLASMKKDLPGTVVF
                     IFQPAEEGPPGNEEGGAPLMIKEGALDNPKVEAIFGLHINSQTPIGQITYKPGATMAS
                     SDWFTIKVKGKQTHGSQPWSGVDPIMTSAAIIDGLQTIVSREMELTKAPVVISVGKIT
                     SGVRSNIIPEEAMMEGTIRTLDPEMQKLVHERMKALTTSIAEAHGATAEVNIDTKTLV
                     TYNNPDLTRKMVPSLEKAAGAGNVKEKEWTTGAEDFSFFSDKVPGIFFFLGGMPKDMD
                     PKKAAPHHTPDFYIDDSMLDVGVKAFANLVFDYAALKNAK"
     gene            complement(1995..2204)
                     /locus_tag="VLL95_14510"
     CDS             complement(1995..2204)
                     /locus_tag="VLL95_14510"
                     /inference="COORDINATES: protein motif:HMM:NF018961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dodecin family protein"
                     /protein_id="HSR40120.1"
                     /translation="MALIKVIEVIASSPVSVADAIRQAVAEVSKTVRNVDSVEVKSIK
                     ATVANGEVATFDVIVHISFRVDSRD"
     gene            2143..>3044
                     /locus_tag="VLL95_14515"
     CDS             2143..>3044
                     /locus_tag="VLL95_14515"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR40121.1"
                     /translation="MASATLTGEEAITSITLISAILFLFKVQTLLGIRCIHLKSTHQK
                     MADKKQAAIGFIFITLIIDITGWGLIIPVFPTLIEQLIGGSVSDAARWSGWLGFSYAI
                     MQFLCSPIVGSLSDKFGRRPVLLISLFGFAIDYVVLALAPTIGWLFLGRIIAGITGSS
                     ITTASAYIADISTPETRAKNFGMIGAAFGLGFILGPVLGGLLGQFGPRVPFWTASVLC
                     LLNWLYGYFVLPESLSKDHRREFSWKSAIPFQSLLRLRQYPSIGGLIFSLVLIYIAAH
                     AVQSNWSFYGIERFQWNEKMIGIS"
BASE COUNT          805 a          776 c          758 g          705 t
ORIGIN      
        1 aacttcagcg ggtatggcct ggggctgttt gctggtgatt acaatggtcg ccagttttac
       61 tggcacaccg gcggtgccgc cggcatggtg agcaaagtgt gctttgtgcc cgatgaaaaa
      121 ctgggcattg ccatcctcac caacaacgac aaccagaatt tcttcgaagc cttacgctac
      181 cagatcctcg atgcttacct gggtgtggcc taccgcgaca gaagccagat gatgtggccg
      241 ggcttccagc gggaaatgca ggaccaactg aaagagatca gccagtggaa gaacagggtg
      301 aaaggaacca cgccaccctt ggattggaag gcttacaccg gccagtattc caacgaactg
      361 tatggcaaca tcacggtcac ccaaaaggat gcgcagctca ttgtgcattt tgaacatcat
      421 ccgcaaatga ccgccacgct tcagtacatg gacaacaacg agtggctgat ggaatactcc
      481 aatattgagt atggcatttt ttccactaac ttttcggccg gcaaaaacaa agtgcaaagc
      541 cttcgcattc ccatgaatcc tttcgtggaa ttggatgctt acacatttgt aaagcaataa
      601 caacctaaca acaagtatgt cgatgagaaa aacaatgaca gcagcagcgc tattgggcgc
      661 ctgcacagcc tttgcacaag gcaacaccgt ggccatcaac cagggttcat cagcactgca
      721 acccaaattg gtggaatggc gccgtcacat tcaccagcat cctgagctcg gcaaccgcga
      781 ggtgcaaact gccgcctatg tggctgcaca cctgcgcagc ttaggcatag aggtgcggga
      841 aaaagtgggc gtaaccggcg tggtaggcgt gctcaaaggc ggcaaacccg gacccttggt
      901 ggcactgcgg gccgatatgg atgcactgcc cgtaaaggag agagtgaatg tgcccttcaa
      961 aagcgaagca accagtgaat acaatgggca aactgtgcct gtgatgcatg cctgcggtca
     1021 cgattcgcat gtgagcatcc tgatgggtac tgcccaatta ctggccagca tgaaaaaaga
     1081 cctgcccggc acggtggtgt ttattttcca accggctgaa gaaggtcctc ccggcaacga
     1141 agaaggtggc gcaccactca tgatcaaaga aggagcgctt gacaatccaa aagtggaagc
     1201 catttttggt ctgcatatca attcgcaaac gcctattgga cagatcacct acaaacccgg
     1261 tgctaccatg gccagcagcg attggtttac catcaaagtg aagggcaagc aaacccacgg
     1321 ttcacaaccc tggagtggcg tagatcccat catgaccagc gccgccatca tcgatggttt
     1381 gcaaaccatc gtaagccgcg aaatggaact gaccaaagcg ccagtagtga tttcagtagg
     1441 taaaataacc agcggcgtcc gcagcaacat cataccggaa gaagccatga tggaaggaac
     1501 cattcgtaca ctggatcctg aaatgcagaa gctggtccat gagcgcatga aagcattgac
     1561 aacctctata gccgaagctc atggcgccac tgccgaagta aatattgata ccaaaacact
     1621 ggtaacctat aacaatcccg atcttacacg taaaatggtg ccctcgctgg aaaaagcagc
     1681 aggcgcaggc aacgtgaaag aaaaggaatg gaccacaggt gcggaagatt tctctttttt
     1741 cagtgacaaa gtacctggca tatttttctt cctcggtggc atgcccaagg atatggatcc
     1801 taaaaaagcg gcgccccacc acacaccaga tttttacatt gacgacagca tgctggatgt
     1861 gggtgtaaaa gcatttgcca acctggtgtt tgattatgca gcgttgaaga atgcgaagta
     1921 agtatagctg accattgaat acaaagagcc cgtgccagca aagcacgggc tttttgcatc
     1981 cgcccatcca ggcatcaatc cctgctgtct acccggaaag aaatatgaac gatcacatcg
     2041 aatgtggcca cttcgccatt ggctaccgtg gccttgatac tctttacttc aacggaatcg
     2101 acgttacgga cagtcttgct cacttccgcc actgcctgcc tgatggcatc cgccacgctg
     2161 acgggtgaag aagcgatcac ttcaataacc ttgataagtg ccatactttt tctttttaag
     2221 gtacaaaccc ttcttggcat tcgatgcata catttgaaat caacccatca aaaaatggca
     2281 gacaagaagc aggccgcaat cggatttatt ttcatcacgc tgatcattga tataaccggc
     2341 tggggtttga tcattcccgt cttccccact ttgatcgaac aactgattgg cggttctgta
     2401 tctgatgcgg cacgatggtc gggctggttg ggattcagtt acgccatcat gcagtttctc
     2461 tgctctccca ttgtgggaag cctgagcgat aagtttggca gaagacccgt cctattgatc
     2521 agcctttttg gttttgccat cgactatgtg gtgctggccc tcgcccctac cattggctgg
     2581 ttgtttttag gcaggatcat tgcaggcatt acaggttcca gtatcaccac cgcgtcagcc
     2641 tatatagccg atatcagtac gccggaaacg agggccaaaa actttggcat gattggagcc
     2701 gcttttggat tgggtttcat tctcgggccg gtactgggtg gtttgctggg acagtttggg
     2761 ccgcgggtac ccttctggac agcatccgta ttgtgcctgc tcaactggct ttacggttat
     2821 ttcgtattgc ccgaatcttt gtcaaaagac catcggaggg aattcagttg gaagagcgct
     2881 atcccctttc aatcgttgct caggctgcgc caatatccat ccatcggggg tctgatcttt
     2941 tctctggtac taatctatat agcagcccac gcagtgcaaa gcaactggag tttctacggc
     3001 attgaacgat ttcaatggaa tgaaaaaatg atcggcatat catt
//
LOCUS       DATIQF010000846         1584 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_74170, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000846 DATIQF010000000
VERSION     DATIQF010000846.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74170"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(493..>1584)
                     /locus_tag="VLL95_14520"
     CDS             complement(493..>1584)
                     /locus_tag="VLL95_14520"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSR40122.1"
                     /translation="MMVNRDTLRPSFRGDGSRFTDEELDKMAKAAPQQPGAQQGNRGG
                     GRGGAFAEMRRVGEMLNAEEPALILSMTANGNDGTIFVQGGGSYAKDSKPAPASVVIS
                     SDEYLRMQRLIQNGIPVKVEAEIRTRFLTDDLNGYNVIAEIPGTDLKDEVVMLGAHLD
                     SWQGSTGATDNAAGIAVMIEAVRIIQTLGVKPRRTIRIALWSGEEQGLHGSRNWVKNN
                     LADPADMKLKPEHGKVSAYFNLDNGTGKIRGVYCQQNQEVMPIFAEWLKPFNDLGATT
                     VTVNNTGGTDHQAFDAVGVPGFQFIQDPIEYNTRTHHTNMDSYDHLIGDDLKQAATIV
                     AAFVMNTAQRDEKLPRKALPEARPAQPRQ"
BASE COUNT          325 a          427 c          413 g          419 t
ORIGIN      
        1 cgccattttt cagaaagccc acaatggaag gcgtggttct gcggccttct tcgttggcta
       61 tcactacagg ttcgttgcct tccattacgg ctacgcaact gttggtagtt cccaggtcaa
      121 ttccaataat ttttcccatg actttcaggt attaatgttt gaattgttac gatttcaggt
      181 acccttttac ggggcaacac ctttctattg gcaagcatta tgccatcacc ggcagaggtg
      241 aaaaaatggc agaatgcgcc tgacaagtcc ttaaaatgat cataaaccgc tgacgacgag
      301 acactttaaa acggcgggat actgacagaa tgggaaggaa attttgggga ctggcagccg
      361 tgcaggtggc agcttcgttg tgtcactcac ttcagcagcc aagcattttt gcacagaaaa
      421 atgatccccg actttgtcgg ggatctgcag ttttggcgac tcctgtcgcc gagaatatgt
      481 tttgccattc agttactgcc tgggctgtgc cggccgtgcc tcaggcaatg ccttgcgggg
      541 aagtttctca tcacgctgtg cggtattcat cacaaaagcg gccacaatgg tggctgcctg
      601 tttcagatcg tcgccaatca ggtggtcgta gctgtccatg ttggtatggt gcgtacgggt
      661 gttgtattca ataggatctt gtatgaactg gaagcccggc acgcctaccg cgtcaaatgc
      721 ctggtgatca gtaccgcctg tattgttcac agttaccgtg gtagccccga ggtcgttgaa
      781 aggcttcagc cattccgcga aaatgggcat cacttcctgg ttttgctggc agtaaacacc
      841 acggatcttg ccggtaccat tatcgaggtt gaaataggcg gacactttgc catgctcagg
      901 tttcaatttc atatcagcag gatcggccag gttgttcttt acccagttgc ggctgccatg
      961 cagaccctgt tcttcaccac tccacaatgc aatgcgaatg gtgcggcgtg gcttcacgcc
     1021 cagggtttga atgatgcgta ccgcttcgat catcacggca atgccggccg cattgtcggt
     1081 agcaccggtg ctgccctgcc agctgtcgag gtgggcgccc agcattacca cttcatcttt
     1141 cagatcggta cccggtattt cagcgatcac gttgtaacca ttcagatcat cggtcaggaa
     1201 acgggtgcgg atctccgctt ccactttcac cggtatgcca ttttgtatga ggcgctgcat
     1261 gcgcaggtat tcatcgctgc tgatcaccac gctggccggt gccggtttgc tgtctttggc
     1321 atagctgccg ccaccttgca caaaaatggt tccatcattg ccattggccg tcatgctcag
     1381 tatgagtgcg ggttcttccg cattgagcat ttctccgacc cggcgcattt cggcaaaggc
     1441 accaccacgc ccaccaccgc ggttgccttg ctgggctccc ggctgctgtg gagcggcttt
     1501 ggccatcttg tcgagttctt catcagtaaa gcggctgccg tcccctctga acgaaggacg
     1561 caacgtatcg cggttgacca tcat
//
LOCUS       DATIQF010000847         2894 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_89286, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000847 DATIQF010000000
VERSION     DATIQF010000847.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2894
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89286"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..478)
                     /locus_tag="VLL95_14525"
     CDS             complement(<1..478)
                     /locus_tag="VLL95_14525"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR40123.1"
                     /translation="MKHIVSGNLVDITGRTIFPADIVIENGKIAAITQRGGQPDPQLP
                     FITPGFVDAHVHIESSMLVPSEFARLAVVHGTVATVSDPHEIANVCGIAGVEYMIENG
                     KNVPFKFNFGAPSCVPATLFETAGASVSVQEVAELLARPEIRYLSEMMNFPGVLHQD"
     gene            complement(828..1295)
                     /gene="rpsG"
                     /locus_tag="VLL95_14530"
     CDS             complement(828..1295)
                     /gene="rpsG"
                     /locus_tag="VLL95_14530"
                     /inference="COORDINATES: protein motif:HMM:TIGR01029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HSR40124.1"
                     /translation="MRKAQAKKLPLAPDPKFNDKLVTRFVNNLMWDGKKSTALTIFYD
                     AVEKVAKITGEDGYEVWKKALANVTPSVEVRSRRIGGATFQIPTEVRPDRKISLSIKW
                     LVRYSRERNGRSMADKLANEIVAASKGEGAAFKKKEDTHRMAEANKAFSHFRV"
     gene            complement(1329..1709)
                     /gene="rpsL"
                     /locus_tag="VLL95_14535"
     CDS             complement(1329..1709)
                     /gene="rpsL"
                     /locus_tag="VLL95_14535"
                     /inference="COORDINATES: protein motif:HMM:TIGR00981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HSR40125.1"
                     /translation="MPTIQQLVRKGREVIKAKSKSRALDACPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTNKVEVIAYIPGEGHNLQEHSIVLIRGGRVKDLPGVRYHIVRGSL
                     DTAGVKDRKQSRSKYGTKKEKAKK"
     gene            complement(1866..>2894)
                     /locus_tag="VLL95_14540"
     CDS             complement(1866..>2894)
                     /locus_tag="VLL95_14540"
                     /inference="COORDINATES: protein motif:HMM:NF014049.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF92 domain-containing protein"
                     /protein_id="HSR40126.1"
                     /translation="KSWIGSATFFLVAAVVLLLLPGWLKHLHPALAWPYVSLHHWPTV
                     IAIIVVAAVAALAEALGSGGSDNVTVPFMVAWGLAAVGDSALQAELIPAILLSLLFAV
                     LAWWRGWLDAGGAALAALIGILIWTAGGWTLALPLLIFFVSGSLLGRLPRTNTTDAKH
                     GRARDWMQVLANGGIAALFMWLHTFLPQGTWVLAAWVSVAISMADTWSSEIGQWAGGK
                     VVNIMGFKPMQAGLSGGVSWQGTLAGLAGALVIGLLGYVVAGFDWLATGIVTLAGFAG
                     MLADSLLGSVCQAGYARADGLLTENREEAVDSNPVKGWGWMTNDWVNLLSNVIICLLA
                     LLLVSLTS"
BASE COUNT          690 a          816 c          742 g          646 t
ORIGIN      
        1 ggtcctggtg caggacgccc gggaaattca tcatttcgct caggtacctg atctctggcc
       61 gtgccagcag ttcggccact tcctgcaccg acaccgaagc gccagccgtt tcaaataagg
      121 tagccggcac acaactcggc gccccgaaat tgaatttgaa gggtacgttc ttcccgtttt
      181 cgatcatata ctctaccccg gcaatgccac acacattggc gatctcatga gggtcgctca
      241 ccgtagccac cgtgccatgc accacggcca gccgggcaaa ctccgagggc accagcatgc
      301 tgctttcaat gtgcacatgc gcatctacaa aaccgggggt aataaaaggc agttggggat
      361 cgggctgccc gccgcgttgg gtaatggcag cgatcttacc gttttcaata acaatgtcgg
      421 cggggaaaat ggtccggcct gtgatgtcaa ccaaattgcc ggatacaata tgtttcatgc
      481 cagcaatttc ctgcaaatgg atcaatcggg caaaattgat tgttcaatct caggatgccc
      541 agtgttgtgt tgtcgactag gtaaaggtcc tgaagtgcaa tggcaccagg ttcacagtag
      601 ctgccttttt atctgcgaaa atctgcgaat ggatctgcgg tatctgcggg aaatttttcc
      661 tccagatctt gacttaaata gaatatctga agtgattcct tgaaaaagat gcctgccttc
      721 cggtaggcaa gcggcgcccg gattgaaaaa aaaatcccgc acctttcgga gcgggacctt
      781 tttattcacc tctaaaaacc aatttcaaaa atggaattgg aaaactttta tacacggaag
      841 tggctgaacg ccttgttggc ttcggccata cgatgggtat cttctttctt tttgaaagca
      901 gcgccttcac ccttgctggc ggctacgatt tcgttagcca gcttgtcggc catgctgcga
      961 ccgttgcgtt cgcggctgta acgaaccagc cacttgatgc tcaggctgat cttgcgatcg
     1021 gggcgtactt cagtagggat ctggaaagta gcaccaccga tacgacggct gcgtacttct
     1081 acgctgggtg ttacgttagc cagggctttt ttccatactt cgtagccatc ttcgccagtg
     1141 atcttggcta ctttttcaac ggcatcgtag aaaatggtga gagcagtgct cttcttgcca
     1201 tcccacatca ggttgtttac aaaacgggta accaacttat cgttgaactt cggatcgggt
     1261 gccaggggga gtttcttggc ttgcgctttc ctcatattat aattacttga gagtcttgaa
     1321 cggatagatt atttcttggc cttttccttt ttggtaccat acttggaacg gctctgcttg
     1381 cggtctttta caccggcggt atcgaggcta ccacgaacga tgtggtaacg tacaccgggc
     1441 agatccttta cacgaccgcc gcggatcagc acgatgctgt gctcctgcag gttgtgtcct
     1501 tcaccaggga tgtaggcaat tacttctact ttgttagtca ggcgtacttt ggccactttg
     1561 cgaagcgctg agttaggctt cttaggagtt gttgtatata cacgggtgca cacgccacga
     1621 cgctgcgggc aggcatccaa ggcacggctc ttgctcttgg ccttgattac ttctcttcct
     1681 ttgcgtacca gttgttgaat agtaggcatt cgatgctttt ttgaaattgg acggcaaagg
     1741 taggcgggtg gcagggaatt gcaaaaagaa aaacaaagaa aaatgccaaa atatccagaa
     1801 aggggtgccc aaaagtggaa aagcccttca aacccgccat ccggctgggc aaataaccaa
     1861 caaaatcagg aagttaagct caccaaaagc aaggcaagga ggcagatgat gacattgctg
     1921 agaaggttta cccagtcgtt ggtcatccaa ccccaccctt tcacagggtt tgaatccaca
     1981 gcctcttccc tgttttctgt cagcagccca tccgcccggg cataaccggc ctggcaaaca
     2041 ctgccgagca ggctgtcggc cagcataccg gcaaatccag ccagggtcac gatgccggtg
     2101 gccagccagt cgaacccggc cacaacatag cccagcaacc cgatgaccag tgcgccggcc
     2161 aggccagcca gcgttccctg ccagctcacc cctcctgaaa ggcccgcctg catgggcttg
     2221 aaacccatga tgttcaccac tttgccacct gcccactggc ctatttcact gctccaggta
     2281 tcggccatgc tgatggccac tgacacccac gccgccagca cccaggtacc ctgcggcaaa
     2341 aaggtatgca gccacatgaa caaagcggca atgcctccgt tggccagcac ctgcatccag
     2401 tcgcgggcac ggccatgttt ggcatcggtg gtattggtac gcggtagcct gcccagcaag
     2461 ctgccggaaa caaaaaagat cagtaaaggc agggccaggg tccagccacc agcggtccag
     2521 atgaggatgc cgatgagcgc cgccagggca gccccgccgg catcgagcca gccacgccac
     2581 caggccaata ccgcaaacag caacgacaac aaaatggcag gaatgagttc ggcctgcagg
     2641 gcactgtcgc ccactgccgc cagtccccag gccaccataa acggcacggt tacattgtcc
     2701 gatccaccgg agcccaaggc ctccgccaac gcggctactg ctgcgacaac aataatggcg
     2761 atgacggtcg gccagtgatg aaggctcaca tagggccatg ccaatgccgg gtgcaggtgt
     2821 ttcagccagc cgggcagcaa cagcaacact actgccgcca ccagaaaaaa tgtcgcactg
     2881 cctatccatg attt
//
LOCUS       DATIQF010000848         1983 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_74182, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000848 DATIQF010000000
VERSION     DATIQF010000848.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1983
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74182"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..445)
                     /locus_tag="VLL95_14545"
     CDS             complement(<1..445)
                     /locus_tag="VLL95_14545"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR40127.1"
                     /translation="MNITFADVAGLDEAKVEVMEIVDFLKNPKKYTALGGKIPKGALL
                     VGPPGTGKTLLAKAMAGEAKVPFFSLSGSDFVEMFVGVGASRVRDLFKQAREKAPCII
                     FIDEIDAIGHARGRNAIMSNDERENTLNQLLVEMDGFGGDTGIIIL"
     gene            complement(467..1069)
                     /locus_tag="VLL95_14550"
     CDS             complement(467..1069)
                     /locus_tag="VLL95_14550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40128.1"
                     /translation="MLPEEKQNNQNRPPFQRNQGGDEKPGRRGPRFSIYWIYAAIAVV
                     LLGAQYFNTGSSALVTNSKTFLEQMYKSGDVARVVNIRNKMLVRVYIKPDSLKKPFYV
                     NKFKEARTVANPAGPHFEFSITGWDSWNEQVAKFETANNLETVPIEVDEEGEMWGPLL
                     NTLLTIGLFVLFFVLMMRKMGGGGGSGGPGGIFNIGKSKA"
     gene            complement(1160..1564)
                     /gene="rsfS"
                     /locus_tag="VLL95_14555"
     CDS             complement(1160..1564)
                     /gene="rsfS"
                     /locus_tag="VLL95_14555"
                     /inference="COORDINATES: protein motif:HMM:TIGR00090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HSR40129.1"
                     /translation="MNKTQVSQAKASTSTSINRQSRLFKSILNGLFDKKAEHIVSIDL
                     RKIPESVADFFVVCEATTATQIKALADSVEKSVKEATGEFPYRQEGFQHAKWVLIDYV
                     NVVIHIMHPEMRRFYQLEEMWSDAPQMEHHDK"
     gene            1666..>1983
                     /locus_tag="VLL95_14560"
     CDS             1666..>1983
                     /locus_tag="VLL95_14560"
                     /inference="COORDINATES: protein motif:HMM:NF015084.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40130.1"
                     /translation="MNLPPVGHSFTSFDTINSTNIHAMECIREGLAVHVQVFFAREQT
                     EGRGQRGKKWWSPPGENIQMTLVLQPLKLAPSQHFRLSAAIATGVHDLLQKEWPTGWR
                     IKWP"
BASE COUNT          438 a          500 c          517 g          528 t
ORIGIN      
        1 ccaggatgat gatgccggtg tcgccaccaa agccatccat ttccaccagc aactggttga
       61 gggtgttttc cctttcgtcg ttgctcatga tggcattgcg gccacgggca tggccaatgg
      121 catcaatttc atcgatgaaa atgatacagg gcgctttttc gcgggcctgc ttgaacaggt
      181 cgcgtacccg gctggcgcca acgcctacga acatctccac aaagtcggaa ccgctgaggc
      241 taaagaaagg tactttggct tcgcccgcca tggctttggc cagcagggtt ttaccggtgc
      301 cgggagggcc taccagcagg gcgcctttgg ggattttgcc ccccagggcg gtatatttct
      361 tggggttctt caggaaatcg acaatttcca tcacctccac tttggcttca tcgaggccgg
      421 ccacatcggc aaaggtgatg ttcactttta catccttgtc gaacagttac gccttgcttt
      481 tgccaatgtt gaagatgccg ccgggtccgc cactgccgcc gccgccgccc attttgcgca
      541 tcatcagcac aaaaaagagc acaaacagac caatggtaag cagcgtgttc agcaagggtc
      601 cccacatttc accttcttca tcgacttcaa tgggaacggt ttccaggttg ttggcagttt
      661 caaacttggc tacctgttca ttccagctgt cccagccggt aatgctgaat tcgaaatgcg
      721 gaccggccgg attggctacg gtgcgggctt ccttgaattt gttgacatag aatggcttct
      781 tcaggctgtc gggtttgatg tatacccgca ccagcatttt gttgcggatg ttaaccaccc
      841 tggccacgtc gcccgatttg tacatctgct ccaggaaagt cttgctgttg gttacgaggg
      901 cactgctgcc agtattgaaa tattgagcgc cgagcaaaac cacggcaatg gcggcataga
      961 tccagtatat gctgaaccgg gggccacgcc tgccgggctt ctcgtctcct ccctggttgc
     1021 gctggaaggg tggcctgttc tgattattct gtttttcttc gggtaacata ctttgttgct
     1081 tcagcttaaa taattgatgg taggtataaa atgttgggtc gtgggttggt aaattaacaa
     1141 gctatatcaa aaaatgcgat catttgtcgt ggtgttccat ttgcggggca tcgctccaca
     1201 tttcttccag ctggtaaaac ctgcgcattt cggggtgcat gatgtggatg accacattaa
     1261 cgtagtcgat tagcacccat ttggcatgtt gaaatccttc ctggcggtaa ggaaattcac
     1321 cggtggcttc tttcactgat ttttccacgc tgtcggccag ggcttttatc tgggtggcag
     1381 tggtggcttc gcacaccaca aaaaaatcgg ccaccgattc gggtatctta cgcagatcaa
     1441 tggaaacaat gtgttccgct ttcttgtcga acaatccgtt cagaatgctt ttgaaaagcc
     1501 tggattggcg gttgatggaa gttgaggtgg aggctttggc ctgtgatact tgagtcttgt
     1561 tcaatcgaca gcttattttt tttctgcgtg gttacaaatg caatatcgaa ggttttggta
     1621 aatgtcttct gctaaattcg ctccaaaaat agccaatcaa caggcatgaa tttacccccg
     1681 gtcggtcatt cttttaccag cttcgataca atcaacagca ccaatataca tgccatggag
     1741 tgcatacgtg aaggattggc tgttcacgtg caggtatttt ttgcccggga gcaaacggaa
     1801 gggcgtggac agcggggtaa aaaatggtgg agcccccctg gtgaaaacat tcaaatgacc
     1861 ctggtgttgc aaccgctgaa actcgctccc agccagcatt tcaggctgag tgccgccatc
     1921 gccaccgggg tgcacgatct gctgcaaaaa gagtggccca ccggctggcg gatcaaatgg
     1981 ccc
//
LOCUS       DATIQF010000849         1700 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_150534,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000849 DATIQF010000000
VERSION     DATIQF010000849.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150534"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..451)
                     /locus_tag="VLL95_14565"
     CDS             complement(<1..451)
                     /locus_tag="VLL95_14565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40131.1"
                     /translation="MNDFFFYLSSVIIVISALLGMIIGPRQSFRPYKWLMVYLVVTLI
                     NTLALSITAKMGIRNHFIANIYQYLRFPLLAWIYFQLFDWQHQKGFYLPVLLWVITPI
                     MLIYCMIALGFDKLHTPYVLAGSSMMVLIILLFFYGMFASDVLITPLK"
     gene            complement(472..837)
                     /locus_tag="VLL95_14570"
     CDS             complement(472..837)
                     /locus_tag="VLL95_14570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40132.1"
                     /translation="MSNNGGKKIGIDRAKKMIANYKSKADANATQSVWFSAEIIAEAL
                     GLTVPSGHAISGLRFHFAAYDPSMTEMGEAAKNHQTTLVFVPTTEESNKHVSKAFAAN
                     APEAVAYNDSKICPPDCDE"
     gene            complement(1154..>1700)
                     /locus_tag="VLL95_14575"
     CDS             complement(1154..>1700)
                     /locus_tag="VLL95_14575"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSR40133.1"
                     /translation="VLGEIRNQLEGEKYLTISPGVMAGGTELNSDDKNYRATVSGKTN
                     IIAPAAIVHGDLRFLGEAQKEAARAKMKTIAANSLRGTSSRFEFYDGFPSMEPKPGNY
                     ALVDQLNAVSLAMGLGPVKAGDPGSRGAGDISWIAQYVDCIDGLGASGGGAHAPGETI
                     NLKEFPRLTERAAVLLYRLTR"
BASE COUNT          436 a          407 c          418 g          439 t
ORIGIN      
        1 acttcaacgg cgtgatcagt acatcgctgg caaacatgcc atagaaaaac aacagtatta
       61 ttaagaccat catagatgag ccggccagca cgtagggtgt gtgcagtttg tcaaatccta
      121 atgcaatcat acagtagatc agcatgattg gagtaatgac ccaaagcaga acagggaggt
      181 agaatccttt ttgatgttgc caatcgaata gctgaaaata aatccaggcc aacagcggaa
      241 atcgcaggta ttgataaatg ttggcaatga aatgatttct gatgcccatt ttggcggtga
      301 tgctcagcgc aagcgtattg ataagcgtga ctaccaggta taccatcagc catttgtagg
      361 gcctgaatga ttgacgggga ccaatgatca tgcccagcaa agcagagatg actataatga
      421 cgctgcttag atagaaaaaa aaatcattca tcttatgaaa tcagcgcatt cttattcgtc
      481 gcagtcagga gggcaaattt tggaatcatt gtaagctacc gcttcaggag cattagcagc
      541 aaacgctttg ctcacatgtt tgttgctttc ttccgtggta ggcacaaaaa ccagggtggt
      601 ttgatggttc ttagctgctt cgcccatctc ggtcatggag ggatcgtaag cggcaaaatg
      661 aaaacgcaag ccgctgatgg catgaccgga gggtaccgta agtccgagtg cttcagcaat
      721 gatttctgca gagaaccaaa ccgattgggt ggcgttcgcg tctgctttgc ttttgtaatt
      781 ggcgatcatt tttttggccc gatcgatgcc gatctttttg ccgccgttgt tgctcatggt
      841 aggtgatttt tttggggtgg tgaaagaaat gagaaacgca atttaatttt tcatcggcac
      901 atgccatgga tgatttctcc ccgctatggg aagcggccct tcggttgcac aagcctcaat
      961 catattggtt atcaacacaa atgcgaaaaa aaagtgaaga actcaaaatg ggtgttttca
     1021 ctatagcaaa aacgaatttt tctgaacaac tttgtagcag tgtagtggta cttcatatgt
     1081 accaaccctg aaccttgtag acaaacccca tgcaacacct gagtggtccc tttaccgcac
     1141 aggtgttgtt attttatcgg gtaagacggt acagcaacac agcggctctt tcagtcagtc
     1201 ggggaaattc cttcaggttg atggtttcac ccggtgcgtg agcgccaccg cccgaagcac
     1261 ccaatccatc aatacaatcc acatactgtg ctatccagct gatatcgccg gcgccacgac
     1321 tgccgggatc gccggccttc accgggccca gtcccatggc caggctgacg gcattcagct
     1381 gatccaccaa tgcatagttg cccggcttgg gctccatgct tgggaagcca tcgtaaaatt
     1441 caaatcgtga actggtgccg cgtaaactgt tggcagcaat ggttttcatt ttggcacggg
     1501 ccgcttcttt ctgcgcctct cccaaaaagc gcaggtcgcc atgcacaata gcggccgggg
     1561 caatgatgtt ggttttgccg gacaccgtgg cccggtagtt tttgtcatcg ctgttcagct
     1621 ccgtaccacc ggccatcaca cccgggctga tggtcaggta tttttcgcct tccagctgat
     1681 tcctgatttc gcccagcaca
//
LOCUS       DATIQF010000850         4910 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_226518,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000850 DATIQF010000000
VERSION     DATIQF010000850.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4910
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226518"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..181)
                     /locus_tag="VLL95_14580"
     CDS             complement(<1..181)
                     /locus_tag="VLL95_14580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40134.1"
                     /translation="MRNLLFAIMLPFMVGKAFAQKTNKGYLNNRISYAVNGMGDRSGP
                     MFQLGFEKSSGQWAWQ"
     gene            complement(405..1580)
                     /locus_tag="VLL95_14585"
     CDS             complement(405..1580)
                     /locus_tag="VLL95_14585"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR40135.1"
                     /translation="MHKLTATVVFDGYEALENAVLVLNDDGTVLDLQMNASIGPDVQQ
                     LEGWLCPGFVNTHCHLELSHLKDRIETGTGMVEFLTRVMFSRQAEPSLVQYCMQNAEE
                     QMLGNGIVAVGDICNTADSGAVKNQSTLYWHSFVEVTGFVPATAKARFDQALQTIEAL
                     QKMVPARQISMAPHAAYSVSPKLFELIQNHTQTVSCMHNQESLAEEEFLTRKQGDMLR
                     LYEAIGVNIDFFEPEGNSSLQYSAHLLPMANSMILVHNCHTTEADIKFLHDSYELISG
                     QFSFCLCPNANLYIGNPLPDVHLLQHRHANICLGTDSLASNRQLSILAEMQTLQQHFP
                     ELPAAQLLKWATHNGARALGVPEKFGSFSKGMRPGVLWLENMGRDGQLRHASVQRLY"
     gene            complement(1703..2410)
                     /locus_tag="VLL95_14590"
     CDS             complement(1703..2410)
                     /locus_tag="VLL95_14590"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR40136.1"
                     /translation="MVILITGTSRGIGFAIAEAFAQDPQQHHLIMVSQNAAKLAASAA
                     DLQTRFPHNTVLHEACNLADKAAIAALSEWLHTQVDAVDVLVNNAGYFLPGSVHNEPD
                     GTLEEMLQTNLLSAYHLSRAVLPRMMARKSGHVFNLCSIASLQAYANGGSYSISKFAL
                     LGFGQNLREEMKPYHIKVTNIMPGAAYTDSWAGSGVQKERIMEAADVAKMVYTAAHLS
                     PQACVEDIVMRPVLGDL"
     gene            2483..3178
                     /locus_tag="VLL95_14595"
     CDS             2483..3178
                     /locus_tag="VLL95_14595"
                     /inference="COORDINATES: protein motif:HMM:TIGR02254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008253 - 5'-nucleotidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YjjG family noncanonical pyrimidine
                     nucleotidase"
                     /protein_id="HSR40137.1"
                     /translation="MKYRHLFFDLDHTLWDFEANSKETLHEVYHAHQLHATLTPDFDY
                     FFERYSFHNKRLWDRYHHGFIKQDELRWKRMWHALLEFKVGDEKLAKTMSQEYLQILP
                     HKTKLFPYTIEIIEYLCNKGYALHLITNGFEDVQWGKLRNSQIDHYFGEVITSERAMA
                     LKPHKEIFEFALQQTGASKAESIMIGDNLDADIRGAMEAGLDTVFVNHIGETTDLQPT
                     YIVHHLKELEGIF"
     gene            complement(3243..3629)
                     /locus_tag="VLL95_14600"
     CDS             complement(3243..3629)
                     /locus_tag="VLL95_14600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40138.1"
                     /translation="MKCFRYLLSVLLLSSVGLTYSQQGILGQWKGSLIETGRSGPYKV
                     SITFRTSASGVLEGTIWYEDYGCGGMLKYMETVGEKIVFREKLYSADKCIDNGQAAFT
                     LQGEALFMIWRHAEQRYQAEGKLRRY"
     gene            complement(3731..>4910)
                     /locus_tag="VLL95_14605"
     CDS             complement(3731..>4910)
                     /locus_tag="VLL95_14605"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HSR40139.1"
                     /translation="DFALLRWIMEKAANKKLPDYLHEKLFAPLGMSSTFMNDDLEQLI
                     PGLADKYYGESRYLKSFGVKTSPGGNYRIVTTAADLEKWTLALEDPQSIAAKAMLRLY
                     RNARPIPVLSPEVHYTFGHEWQKIGETEVIKHGGVNHDFYMVRIPAREITIIGLGNSN
                     SNMTKAMSLADFYLGFKPGKVEKPPAISAQQKAIGKTDLAKYAGKYFEQKKPGHSSDI
                     PGIQFYDIRCEGDNLNFYYAGNEYFTLMPVGNDLFKDPDFGTIFQFIDPHPDSLMRMQ
                     AWPADGSPTIKYVRAPSATNYSTAYLRQFTGRYYSRHLDFYCSIVLNDSNLLVLRRPT
                     IADKPLVTYGTDRFIFEMESGSDSWYVMATFSRNAEGKVDGIDMQHIRMMHHRFDKVD
                     "
BASE COUNT         1181 a         1235 c         1220 g         1274 t
ORIGIN      
        1 tttgccaagc ccattgtcca ctacttttct caaagcccaa ttggaacatt ggaccactgc
       61 ggtcgcccat tccatttact gcatagctaa tgcgattatt caaatagcct ttatttgttt
      121 tttgtgcaaa tgctttcccc accatgaaag gaagcattat tgcgaataat aaattgcgca
      181 tcgaaatcaa ttgcggttag ttctgcatca aagatgcagg aatcgcctga aatgcctcac
      241 cgtaaaaaca cccttttttg tgccggcagt gctttttaga cacgattttg acttttgtca
      301 aattgtgcct ctttgaaggc aggtattagc gaatggatga tgacggggca ttaggattgc
      361 ccctttgcag tagcagcagt catcaacaaa aaggggagag aatatcagta caaccgctgt
      421 accgatgcgt gccgcaattg gccatcgcgg cccatatttt ccagccacag cacgccgggt
      481 cgcatgccct tgctgaagct gccaaatttt tcgggcacgc ccagggcacg ggcgccattg
      541 tgggtggccc acttgagcag ttgtgccgcc ggcagctcgg gaaaatgttg ttgcagggtt
      601 tgcatttcgg ccagtatgct caactggcgg ttgctggcca ggctgtcggt gccgaggcag
      661 atattggcat ggcggtgctg cagcaggtgt acatcgggca gggggtttcc aatgtacagg
      721 ttggcattag ggcagaggca aaaagaaaac tgcccgctga tgagctcgta gctgtcgtgc
      781 aaaaacttga tatcggcttc ggtggtatgg cagttgtgca ccagtatcat gctattggcc
      841 atgggcagca ggtgggcgct gtattgcagg ctgctgttgc cctcgggttc aaaaaaatcg
      901 atgttcacgc caatggcttc gtagagccgc agcatatcgc cctgcttgcg ggtgaggaat
      961 tcctcttcgg ccaggctttc ctggttgtgc atgcagctca ccgtttgcgt atggttctgt
     1021 atcagctcaa acagcttggg cgatacgctg taagccgcat gcggcgccat gctgatctgc
     1081 ctggcgggca ccatcttctg cagggcctcg atggtttgca gggcctggtc gaagcgggcc
     1141 ttggcggtgg ccggtacaaa accggtcact tccacaaaac tgtgccagta caacgtactc
     1201 tgatttttga cggcccccga atcggccgtg ttgcagatat cgcccacggc tacaatgcca
     1261 ttgcccagca tttgctcttc ggcattttgc atgcagtatt gcaccaggct gggctcggcc
     1321 tgccggctga acatgacacg ggtgagaaac tccaccatgc ccgtgccggt ttctatgcga
     1381 tccttgagat ggctgagctc gaggtggcaa tgcgtattca caaaacccgg gcacaaccag
     1441 ccttccagtt gttgcacatc ggggccaatg ctggcattca tttgcaggtc gagcacggtg
     1501 ccgtcatcgt tcagcaccag caccgcgttt tccaacgcct cgtacccatc gaacactacc
     1561 gtggctgtga gtttgtgcat tggggatttg ttgtttttag tttgttgttt ttggttgatg
     1621 ccccacatac caacttgtca acccgtctac ttctgaacta tggaacttgt gaactattca
     1681 ccccctttag ggggcagggg gtttataggt ctccgagcac cggcctcatc acaatatctt
     1741 ccacacaagc ctgtgggctc aaatgtgctg cagtgtaaac catttttgcc acatcggcgg
     1801 cttccataat tctttctttt tgcacaccac tgccggccca gctgtcggtg tatgcggcgc
     1861 ccggcattat gttggtcact ttgatgtggt agggtttcat ttcttcccgc aggttttgtc
     1921 caaaacccag cagcgcaaac ttgctgatgc tgtagctgcc gccattggca taggcctgca
     1981 gcgaggcaat ggaacagaga ttgaacacgt ggccgctttt gcgtgccatc atgcggggca
     2041 gcactgcccg ggaaaggtga taggccgaca gcaggttggt ttgcagcatt tcttccagcg
     2101 tgccatctgg ttcgttgtgc acactgccgg gcaaaaagta gccggcattg tttaccagca
     2161 catccacggc gtccacctgt gtatggagcc attcgctaag ggcggcaatg gccgctttat
     2221 cagcgaggtt gcaggcctca tgcaaaacgg tattgtgcgg aaagcgggtt tgcaggtcgg
     2281 ccgcactggc cgccagtttg gccgcgtttt gcgataccat gatgaggtga tgctgctgcg
     2341 gatcctgggc aaatgcttct gctatggcaa acccgattcc tctcgatgtg ccggtgatca
     2401 atataaccat gtgataagat gctttgtatg gtaaaaggcc tgtagcttgc gcaaatatcg
     2461 gtgtaatgca ccgccagctt tcatgaaata ccgtcatctc tttttcgacc tcgatcatac
     2521 gctctgggat tttgaagcca acagcaagga aaccctgcac gaagtgtacc atgcccacca
     2581 actgcatgca acactcaccc ccgatttcga ctattttttt gagcgctact cctttcacaa
     2641 caagcgcctg tgggatcgct accaccatgg ctttatcaag caggatgaac tgcgctggaa
     2701 acgcatgtgg catgccctgc tcgaattcaa agtgggcgat gaaaaactgg cgaagaccat
     2761 gagccaggaa tacctgcaga tactgccgca caaaaccaaa ctgtttcctt acaccatcga
     2821 gatcattgaa tacctatgta acaagggcta tgcgttgcac ctcatcacca acggctttga
     2881 agatgtgcaa tggggcaagc tgcgcaacag ccagatcgat cattacttcg gcgaagtgat
     2941 cacaagtgaa agagccatgg ctttaaaacc gcacaaggag atttttgaat ttgccctgca
     3001 gcaaaccggc gccagcaaag ccgaaagcat catgattggc gacaacctcg atgccgacat
     3061 ccgcggcgcc atggaagcgg gattggacac agtattcgtg aaccacattg gcgaaaccac
     3121 cgacctgcag cctacttata tcgtgcatca tttgaaggag ttggagggga tattttaggt
     3181 ttggggtttt tggttttttg ttcaattgtt tcagccatgt ccggcttccg ggacaacaag
     3241 tttcaatatc ggcgaagctt accctccgct tggtagcgtt gctcggcatg acgccagatc
     3301 ataaagagtg cttcaccctg aagagtgaag gctgcctgac cattatcaat gcatttgtcc
     3361 gcagaataaa gtttctcacg aaaaacaatc ttttcgccta ccgtttccat atactttagc
     3421 ataccgccgc atccataatc ctcgtaccag atggtacctt ccaagactcc tgaagctgag
     3481 gtccgaaaag tgatactgac tttgtaggga cctgagcgtc ccgtttcaat taatgatcct
     3541 ttccattgtc ccagaatgcc ctgttgcgaa taagtcaaac caacactact caaaagaagc
     3601 acagacagca ggtatcggaa gcatttcata aaaaagatgt ttttgctatc aaggtacaaa
     3661 taacaaacag gtatgaaaac atgaatgcac tgctcaactg tttaccagaa atggtgattt
     3721 gagaaccaaa ctaatctact ttgtcaaagc ggtgatgcat catgcgaata tgctgcatat
     3781 ctataccatc aaccttccct tcagcattcc ttgaaaatgt agccatcaca taccagctat
     3841 cactacccga ttccatttca aaaatgaaac ggtcggtacc ataggttacc aatggtttgt
     3901 cggcaatagt aggacgacgc agtacaagca gattgctatc gttcagcaca atgctgcaat
     3961 agaagtcgag atgccggctg taatacctgc cggtaaactg ccgcaggtat gctgtggaat
     4021 aattcgtcgc tgatggggca cgcacatatt ttatggtagg gctgccgtcg gcaggccatg
     4081 cctgcatgcg catcagcgaa tcgggatgtg gatctatgaa ttggaaaatg gttccgaaat
     4141 cagggtcttt aaacaaatcg ttgcccacgg gcataagcgt aaagtactca ttgccagcat
     4201 agtaaaaatt caggttatcg ccttcgcatc tgatgtcata aaactgaata cccggaatat
     4261 cgctgctatg gccaggtttt ttttgctcaa aatatttgcc ggcatatttt gctaagtccg
     4321 ttttgccgat ggctttttgc tgagcagaaa tagcaggtgg cttttctact ttacccggct
     4381 tgaagccgag gtaaaagtca gccaggctca tcgccttggt catattactg ttgctgttgc
     4441 cgaggccaat aatggttatt tctcttgctg gtatgcgaac catgtagaaa tcatgattta
     4501 cgcctccatg tttgatgacc tctgtttctc caatcttctg ccattcatga ccaaacgtat
     4561 aatgcacttc cggagaaagg acgggaatgg gtcgggcatt tcggtacaaa cgtaacatcg
     4621 cttttgcagc gatggattga ggatcctcca gcgccagcgt ccacttttca aggtcggctg
     4681 cagtggtcac tattctatag tttccccctg gtgaagtttt aacgccaaag gattttaaat
     4741 acctgctttc gccatagtat ttatcagcca gcccgggaat gagctgttca agatcatcgt
     4801 tcatgaaagt agaagacatg ccaagaggcg caaacagctt ttcgtgcaaa tagtcgggca
     4861 atttcttatt ggcggctttc tccatgatcc accgcagcaa cgcaaaatca
//
LOCUS       DATIQF010000851         3056 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_180778,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000851 DATIQF010000000
VERSION     DATIQF010000851.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3056
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180778"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..602)
                     /locus_tag="VLL95_14610"
     CDS             complement(<1..602)
                     /locus_tag="VLL95_14610"
                     /inference="COORDINATES: protein motif:HMM:NF018190.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate binding family 9 domain-containing
                     protein"
                     /protein_id="HSR40140.1"
                     /translation="MSVVKMYLLVVGGLLATWVKADPGGRSSGSITPLQEQFKMPITK
                     TTAPILIDGVLDEATWQNIPGVSKFYKKFPTDEGWGTRQTLVKTTYDDKFLYIGVVAY
                     DSGKAFIRTLKRDGGHDGSDGFGVVLDPLNQHTNGFFFVVNAYNAQSEDLITAGSSDG
                     PNFSWDNKWFSATTRHEDKWIAEIAIPFKTLRYNSEQDTWG"
     gene            complement(676..1362)
                     /gene="trmD"
                     /locus_tag="VLL95_14615"
     CDS             complement(676..1362)
                     /gene="trmD"
                     /locus_tag="VLL95_14615"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: protein motif:HMM:TIGR00088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HSR40141.1"
                     /translation="MHIDILTVLPELLESPLSHSIMKRAQDKGLLTVKVHHLRQWAVN
                     EYGQVDDYQYGGGAGMVMMCEPLVKAIEELQQAGPFDEIIYMTPDGKRFEQRDANQLS
                     LKGRLLIICGHYKGIDERVREHFVTREISVGDFVLSGGEIPAAMVVDAIGRLIPGVLN
                     DETSALFDSFQDNLLAPPVYTRPAEFRGWKVPDILLSGDLRKIDEWRHEQALQRTTHR
                     RPDLLEGQDH"
     gene            complement(1447..1836)
                     /locus_tag="VLL95_14620"
     CDS             complement(1447..1836)
                     /locus_tag="VLL95_14620"
                     /inference="COORDINATES: protein motif:HMM:NF013633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HSR40142.1"
                     /translation="MEATEKLRLDKYLWSIRVFKTRSAAAEACEKGRVKLNGDSVKAS
                     RTVKTGDTYDIKGEARRWVIQVTGLLHTRQAYSEAIKYYLDLTPPEELEKAKHQAESF
                     HTGKRLSKIGRPTKKQRRDLDGLLEGE"
     gene            2036..>3056
                     /locus_tag="VLL95_14625"
     CDS             2036..>3056
                     /locus_tag="VLL95_14625"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HSR40143.1"
                     /translation="MALLLRQVTIADPRSDLNGKTTDILIENGSIAAIGDLTAPAGCR
                     VVEGSGLLVSPGFTDIFSHFCDPGLEYKETLETGAAAAAAGGYCRVLVLPNTQPAVHN
                     KAQVEYIVQKSKSLPVTILPLGAISKNCEGKDLAEMYDMRNSGAVAFSDGVHPVQNSQ
                     VLTKALQYVKAFDGVIVQVPDEAALSKNGLMHEGITSTQLGLPGKPALAETLLLNRDI
                     ELLRYTGSKLHVTGISTAASIDLVRRAKAEGLQLTCSITPYHLNFCDEDLVNYDTNLK
                     VNPPLRTRADMEALKAAVLDGTIDCIASHHQPHEYDSKVCEFEYAKYGMEGLESCVGA
                     VKKALP"
BASE COUNT          713 a          869 c          762 g          712 t
ORIGIN      
        1 ccccaggtgt cctgttcgct gttgtatcga agcgtcttaa agggaatggc tatttccgcg
       61 atccatttgt cttcgtgccg ggtggtggcc gaaaaccact tgttgtccca actgaaattg
      121 ggaccatcgc tgctgccagc agtgatcagg tcctccgatt gggcgttgta ggcattcacc
      181 acaaaaaaga atccgttggt atgctggttc agcgggtcta ataccacgcc aaatccatcg
      241 ctgccatcgt gcccgccatc acgtttcaag gttcggatga aagccttgcc cgaatcgtaa
      301 gctaccacgc caatgtataa gaatttgtca tcgtaggtag tcttcaccag ggtttggcgg
      361 gttccccaac cttcatccgt cggaaacttt ttatagaatt tgctgacgcc cggaatgttt
      421 tgccaggtgg cctcgtccag cacaccgtca ataagaatgg gggcagtggt tttggtaatg
      481 ggcattttaa attgctcctg caagggagta atgctgccac tgctgcgccc cccgggatcg
      541 gccttgaccc atgttgccag caatccgccc acaaccagca aatacatttt cactacggac
      601 atgcccaaaa ttaaaatggc accccgcatt tataaccaat gagaatgacc agaagaataa
      661 gcgggtgata agcggtcaat ggtcctgtcc ttccagcagg tcgggccggc ggtgggtggt
      721 gcgttgcagg gcctgttcat gacgccattc atcaattttg cgcaggtcgc cgctcagcag
      781 gatatcgggc actttccaac ccctgaattc ggcaggacgg gtgtaaaccg gcggggccag
      841 caggttgtcc tggaatgaat cgaaaagcgc agaggtctca tcattcaata caccgggtat
      901 cagcctgcca atggcatcca ccaccatggc ggccggtatt tcgccgccac tcagtacaaa
      961 atcgccaaca gaaatttcgc gggtcacaaa atgttcccgt accctttcat caatgccttt
     1021 gtaatgcccg caaataatga gcagccttcc tttcagcgac aactggttgg catcgcgttg
     1081 ttcaaaccgc ttgccatcag gtgtcatgta aatgatctca tcaaaagggc ccgcctgctg
     1141 cagttcttct attgctttta ccaggggctc acacatcatc accataccgg cgccaccacc
     1201 gtactggtag tcatccacct gcccgtattc attcaccgcc cactggcgca agtgatgcac
     1261 tttcacggtg agcaaacctt tgtcctgggc ccgcttcatg atgctgtggc tcaacggact
     1321 ttcaagcaac tcaggcaaaa cagtaaggat atcgatatgc atagcagaat ttgaaatgtt
     1381 gtttccggcc attgatcttt tctaaaatga ataactcgtg aacccgtgaa cttgtgaact
     1441 tgtgaactac tccccttcca acaacccatc cagatcacgt ctttgctttt tggtgggccg
     1501 cccaatttta ctcaggcgct tgccggtatg aaaactctcc gcctgatgtt tggctttttc
     1561 cagttcttcg ggtggtgtaa ggtcgaggta atacttgatg gcttcgctgt aggcctggcg
     1621 ggtgtgcagc aaaccagtaa cctggatcac ccaacgcctg gcttcaccct ttatatcgta
     1681 ggtatccccg gttttcaccg tgcggctggc ttttaccgaa tcgccgttca gcttaaccct
     1741 ccccttctcg caggcttcgg ccgcggcact ccgtgttttg aacacccgga tgctccacaa
     1801 gtatttgtcc agccttagtt tctcagtggc ttccatagca gctgcgaagt aacgccaatt
     1861 cgacaattgg ctgatgcgct gccattcaga agcattcttt ccaagctttt aacgcatacc
     1921 tgtaggcagg caaatgtgaa cccatgaact tgtaaacagg tgaactcgtg aacttccaaa
     1981 ctcttaccct cctccaccct aatcacttat cttcgccgca atcttgcaca gcgctatggc
     2041 attgctttta cgtcaggtaa ccattgccga cccccggtcg gatttgaacg gaaaaacaac
     2101 ggatatcctt atcgaaaatg gttccattgc ggccattggc gatctcaccg ctcctgccgg
     2161 ctgcagggtg gtagaaggtt ccggcctcct ggtatcgccg ggcttcaccg atatcttcag
     2221 tcatttttgc gaccccggcc ttgaatacaa ggaaaccctg gagactggcg ccgccgctgc
     2281 cgccgccggt ggctattgta gggtgctggt gctgcccaat acacagccag ccgtgcacaa
     2341 caaggcgcag gtggaataca tcgtgcagaa aagcaaaagc ctgccggtaa ccattctgcc
     2401 tttgggtgcc atcagcaaaa actgcgaggg caaggacctg gccgagatgt acgacatgcg
     2461 caacagcggc gccgtggcct tcagcgatgg cgtacacccg gtgcaaaaca gccaggtgct
     2521 caccaaagca ctgcaatatg taaaagcgtt tgacggcgtg atagtgcagg tgcccgatga
     2581 agcggcactc agcaagaacg gactgatgca cgaaggcatc accagcacgc agctcggatt
     2641 gccgggcaaa ccggcgctgg ccgaaacatt gctgctgaac cgtgacattg aactgctgcg
     2701 ctacaccggc agcaagctgc acgtcactgg catcagtacc gcggccagca tcgacctggt
     2761 gcgacgtgcc aaggcagaag gcctgcagct cacctgctcc atcactccct accacctcaa
     2821 cttttgcgat gaagacctgg tgaactacga caccaacctg aaagtgaatc ctcccctgcg
     2881 cacccgtgca gatatggaag cgctgaaagc ggcggtactc gatggcacca tcgattgcat
     2941 tgccagccac caccagccgc atgaatacga cagcaaagtg tgcgaatttg aatatgcgaa
     3001 atacggcatg gaaggattgg agagttgtgt aggtgcggtg aagaaagcat tgccct
//
LOCUS       DATIQF010000852         2038 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_256738,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000852 DATIQF010000000
VERSION     DATIQF010000852.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256738"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..375)
                     /locus_tag="VLL95_14630"
     CDS             complement(<1..375)
                     /locus_tag="VLL95_14630"
                     /inference="COORDINATES: protein motif:HMM:NF012795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIR synthase related protein"
                     /protein_id="HSR40144.1"
                     /translation="MEINSSTLQQLRITEEEYELIKEKMGRTPNFNELCAFSGMWSEH
                     CSYKNSIKWLKTLPREGGRMLVAAGEENAGLMDMGDNWGVVFKIESHNHPSAIEPFQG
                     AATGVGGIHRDIFTMGARPIAAL"
     gene            918..1784
                     /locus_tag="VLL95_14635"
     CDS             918..1784
                     /locus_tag="VLL95_14635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40145.1"
                     /translation="MLRNLGNYTVLQNTHANGTFLIRPGNLGTNDVLITGTGIAIGPR
                     GPLGSVVPNVALDIRADGEAVRIAGTTPYLTMTDQGNLRGYIQAWSDGLALASNGFDV
                     GLWTNGVKRLAVKPNGALEVAGSTGSAGQVLTSNGAGAAPVWASPANGLYNSFRFITM
                     SGSLFTSNNDGVWRDIPGLTHSFNLAGNHYVDVAAVMTGYPESCFNCDQPRVLFRLLV
                     NGNAFAGHVGRGAGGLYFSSFPVTTGFTLPAGNHTIKWQVFTNSGSNFVLRSSDVESG
                     NTTYMRVWMVPQ"
BASE COUNT          446 a          527 c          500 g          565 t
ORIGIN      
        1 gagcgctgca atggggcgag cccccatggt aaagatgtcg cggtggatgc cgcccacccc
       61 tgtggctgct ccctggaagg gctcgatggc gctgggatgg ttgtggcttt cgatcttgaa
      121 caccacgccc cagttgtcgc ccatgtccat caggccggcg ttttcctcac ccgcagctac
      181 cagcatgcgt ccgccttcgc ggggtagggt tttcagccac ttgatgctgt ttttataact
      241 gcaatgttcg ctccacatgc cgctgaaggc gcagagctca ttgaaattgg gcgtccggcc
      301 cattttttcc ttgatcagtt cgtattcctc ctccgtaatg cgcaattgct ggagggtgga
      361 gctgtttatt tccatgaaaa acgatgctat tgaggccgca aatgtaaacg atgcaggcgg
      421 gaatgacgaa ggctaattct ggccgctgtc cacctgtttt atatccgggc ggttgttcgc
      481 tccctttacg ccctcccgac tttttgattg ccttggaccg catcatggcc ccgagccttt
      541 ggactttccg ttgtgaggca attgtgcacc caactgaggc atggaccgca atgcagaaaa
      601 caacgcactg cattccattg ccattggcac cactgtgcgc atattcagtg gttctatggt
      661 gcccaattgc ctggcaacac atgtcttgtg cagtttattc ctttgtgtat ttttatcaaa
      721 aacacccact tatgaaatcc ttgcgcttac tgcccatggc tcttttgctc ttttcttcgc
      781 aagtgtcagc ccaaaatgtt ggcattggca cctctacccc attagccaat ttgcacttgg
      841 ccggtgtcaa tcctgagttt agaataaatg acgatggcag tatcatcatt ttaaacaaca
      901 actcgacttc cttttccatg ttgagaaatc tgggcaacta tactgttctt caaaacacgc
      961 atgcaaacgg cacttttttg atacgacctg gcaatttggg caccaatgat gtattgatta
     1021 ccggcacagg cattgccatt ggtccccgtg ggcctctggg ctctgttgtt cccaatgtgg
     1081 cactcgacat cagagccgat ggcgaggccg tacgaatagc gggcactacg ccctatttaa
     1141 ccatgacaga ccaaggcaac ctgagaggtt atatacaagc atggagcgat ggcctggctt
     1201 tggccagcaa cggctttgat gtagggctgt ggaccaacgg ggtcaaacgc ctggcagtaa
     1261 agcccaacgg cgccctggaa gttgcgggca gcacaggttc ggcagggcag gtgcttacca
     1321 gcaatggcgc cggagccgct cctgtatggg ccagtccggc caacggtctc tataacagtt
     1381 tccgattcat cactatgtcg ggaagtttat tcaccagcaa caacgatgga gtttggcgtg
     1441 atattcccgg actgacgcat tcgttcaacc ttgcgggcaa ccactatgtg gatgtagctg
     1501 cagtaatgac tggctatcca gaaagctgct ttaactgcga tcagcccagg gtgctgttca
     1561 ggttgctggt caatggaaat gcctttgccg ggcacgtcgg aaggggtgca gggggtttgt
     1621 atttcagttc ttttcccgtc accacgggtt ttacactgcc agccggtaac catacaatca
     1681 aatggcaggt ctttactaat tcagggtcca attttgtttt gcgatcctct gacgtggaat
     1741 ctggcaatac tacctatatg agggtatgga tggtaccgca ataatggaac ttttcaaaac
     1801 cgaaaatttc tcaaatgatg atgctggtct agcccttttt gctctacatc ttgctttaat
     1861 aaagtctctg acaaaagttt tgtttcgata cttcattcag taaaatagtg tcccattcat
     1921 ccttttgttt tgccctgttg ctgtaagcaa aaaccgtttc cattcgcttg ctttcgcttc
     1981 agcctttgtt aaggtcaaaa tcttttcatt gatcccccct ggcagtagca aagaggcc
//
LOCUS       DATIQF010000853         7075 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_104431,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000853 DATIQF010000000
VERSION     DATIQF010000853.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7075
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104431"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..735)
                     /locus_tag="VLL95_14640"
     CDS             complement(<1..735)
                     /locus_tag="VLL95_14640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40146.1"
                     /translation="MIHTADWYVLFVFGCSLLGLLVSGVLFFANKDAPFPAKMLAGFL
                     TSLSLVGLNNALMATDFFRHLPHLWRVVAFASFLPPAFSYLYLRSVLKQEFRFRKNDW
                     LFFLPSAIYVATMLPFYLQPAHEKLELIARIIQNNDLIAQEPENLVPNGIFSVVRITY
                     GLFTSVAMAVLLTKGRRSIDNEAVHLGENLPMYRWLVSLTIAVGTLYSLVTFITFSHL
                     THLISLWELMAFCISITVLFVCVSLLA"
     gene            951..1373
                     /locus_tag="VLL95_14645"
     CDS             951..1373
                     /locus_tag="VLL95_14645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40147.1"
                     /translation="MKRLLLAAALLLGVNFASQAQIKIPGGADDVLKNFTAPPAIGDI
                     GKTAGGIADILGSKLSLSGDQKKSTLDAVTGFLKDKSGIMGLVKSNPSDYLKKFNPLQ
                     SGLFGKLKGILGAAKFADFLKLKPTSNIAGNLLSNLFF"
     gene            1518..2087
                     /locus_tag="VLL95_14650"
     CDS             1518..2087
                     /locus_tag="VLL95_14650"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSR40148.1"
                     /translation="MAPAVTKFAKLRNTYQTRHSNHSTTAAMTEREYNECVKQYADNV
                     YRFIVKNLRHTEDAQDVVQSAFEKLWANREQVDPAKAKSYLFTIAYNQMIDHLRKVKR
                     MSYKEEIPEAALGTGDQPRLYLKKALENALATLNETQRSLVMLKDYEGYSYEEIGKIM
                     DLNESQVKVYLHRARVQLRNYLVRLENVV"
     gene            2137..3402
                     /locus_tag="VLL95_14655"
     CDS             2137..3402
                     /locus_tag="VLL95_14655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40149.1"
                     /translation="MNINRNNYETFFLLYVDGEMSPQEMLEVDAFCQKHPDLADELQL
                     LMETRLSPEADIAFINKAALLKLEEWDAENLTNEQLALLEKLEQGANTHTTEIPDTLT
                     QKEWTLLQQTQLPAEAVSMPHKHTLIKALQWDADNLTSQQLQLLEALEDGAAVPAGIL
                     SDPELNKDWLLLQQTQMQPEQLVMPNKQRLYRQEAPAGTPVIRMAWWRYAAAAAVIAG
                     IGWFVFGDMGNAGNDVPPQLSQQKSGTPLITEPVTEKADTTEVQQQPLPELQQAPVQL
                     AANDRKTATPVKALAAKQPAAVAQDESSSSSIAAYRLSLSEEQALRGKASQDGRNIDH
                     NGRAPISARDYVNAADAVTASNNSSNVKFENAVMMEEMEEDDYINIGGARIKSQKLRG
                     VLRTVSRKVTRSFDKSTVAPAETVAAELK"
     gene            3462..4325
                     /locus_tag="VLL95_14660"
     CDS             3462..4325
                     /locus_tag="VLL95_14660"
                     /inference="COORDINATES: protein motif:HMM:NF024957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HSR40150.1"
                     /translation="MKHFVLLAACTTAALAGFGQSDSTQTDKPDTIKIGSMTIIKKKD
                     GSSTTTTESKGTKWYTGKRKPKRVETSWLNFDFGFNNFVDETDYSSPEAQQFARATRP
                     GEPPFSESDFNLHYGKSINTNIWFFRQHFRFTNDRKMRLTYGLFLETNNYRFDPALRT
                     SYQSGKDPFVWRDSINFRKNKLALDYLTVPLMVGFDTRPGRRGFSIGAGVSMGYLYNS
                     RNKQVSNERGKLKNRGNFDVEVWKFQYIGEIGTGPVKLYFSYAPSTVYERGLIHKPYN
                     VGIRLGDWQTW"
     gene            4390..5718
                     /locus_tag="VLL95_14665"
     CDS             4390..5718
                     /locus_tag="VLL95_14665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HSR40151.1"
                     /translation="MILYARQPTPRIAFMAQWLGMRLFGHGLQIVSDSENLPTGERVL
                     NYSGEKITGPSYQVVPHGLLHQQGIIRQTIAVSKQGSLPFFFATAGGDHGFDVLAASF
                     FLLQRYEEYYPGYELDEYGRYSHLNSVAWQQGFLKRPIVDEWVEDLKEKLSARFEGMR
                     FAALEPSLLATCDVDMAWSYRHKGLLRNIGGHFNDFRNLRWGKILERWLVLAGLKKDP
                     FEILFELEEAHRYYHIPSCYFFLLAAQHQGYDKNISPRSKNLQRLIRWIQEDTAVGIH
                     LSWAASQDTSVMQAEKQCLEKVVQQPVLRNRMHYLNFRLPETYRQLAALGIAADYSMG
                     YGTINGFRAGTSHPYHWYDLEKEATTALKVFPFAWMDANSIFEQKDSPDAACAEWMQL
                     YEPVKATGGTFITICHNHLMGRDAEGRPWWLMYNRALKACGYTKEEETGD"
     gene            complement(5744..>7075)
                     /gene="glpK"
                     /locus_tag="VLL95_14670"
     CDS             complement(5744..>7075)
                     /gene="glpK"
                     /locus_tag="VLL95_14670"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: protein motif:HMM:NF000756.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004370 - glycerol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HSR40152.1"
                     /translation="AAKVKLVAAEALINAGLTAANIAAIGVTNQRETTVVWNRHTGQP
                     YYNAIVWQDTRTEQLVKEMNARHGLNAFQAKTGLPFATYFSSLKLKWLLDHVEGLRAD
                     AEKGDALFGTIDTWLLWKHTGEHKTDVTNASRTQLMNLHSLDWDDEILAALDIPRPML
                     PQIMPSSGYFGTIQEGSFKDINIMAMLGDQQAALVGQTCFEPGQAKNTYGTGCFMLLN
                     TGEKIVPSTKGMLTTVAYKFGNAPVHYALEGSIAFAGAMVQWLRDNLGIIQSSSEMEP
                     LAGSVADNGGVYFVPAFSGLYAPYWRADARGIIAGLTGYAGKAHIARAVLEATAYQTL
                     DVLKAMEADSGIQLDALNVDGGMTVNNLLMQFQADMLQVPVQLPRVHETTALGAAYAA
                     GYASGYWDSLEALQANHQIEKRWQPAMPVSQRDALYAQWEKAVAKSFDWVK"
BASE COUNT         1857 a         1945 c         1804 g         1469 t
ORIGIN      
        1 ggccagcagc gagacacaaa caaaaagtac agtaatggaa atgcaaaatg ccatcagttc
       61 ccacagactg attaaatgcg tcaggtggct gaaggtgatg aaggttacca gggagtaaag
      121 cgttccaaca gctatggtta atgatacaag ccagcggtac atgggcaggt tctcgcccag
      181 gtggactgct tcattgtcga ttgatcgcct tcccttggtc aataaaaccg ccatcgccac
      241 tgaggtaaag agcccgtaag tgatcctgac cacagaaaaa atgccgttgg gcaccaggtt
      301 ctcaggctcc tgggcaatca ggtcgttgtt ctgaatgatc ctggcaatga gctccagttt
      361 ttcgtgagct ggctgaagat aaaagggcaa catggtagcc acgtaaatcg ccgagggcag
      421 aaaaaacaac cagtcatttt ttctgaacct gaattcctgt ttcaggactg aacgcaggta
      481 caggtaggaa aaagcaggtg gtaaaaagga ggcgaaggcc accacccgcc acaagtgcgg
      541 caggtgtctg aagaaatcgg tggccatgag ggcattgttc aaacccacca atgacaagga
      601 ggtgaggaac ccggccagca tcttggccgg aaatggggca tccttattgg caaaaaaaag
      661 caccccggaa accaatagtc ctaacaggct gcaaccaaaa acaaaaagca cataccagtc
      721 agcggtgtga atcatagggg gtttggttta agcatcctgg ttaggaccgt cgtccaaata
      781 atcagtgctt tgacaacaaa tataggatgg cgatgcatcg attgtcctgg cacaggaatt
      841 tccggaaatg tttgtttcaa tttgaggaat ccaatcgaac attgacgctt ctcaatcgtt
      901 tttgaactac atttccaagt cattattcac ttcaaccaaa ctccatcact atgaaaagat
      961 tgttgttagc agcagcactg ctgctgggtg tgaacttcgc cagccaggcc caaatcaaaa
     1021 taccgggcgg tgccgacgat gtgctgaaaa actttaccgc accccccgcc atcggcgaca
     1081 ttggcaaaac cgccggcggc attgcagata tcctgggcag caagctgagc ctcagcggcg
     1141 accagaaaaa atccaccctc gatgcggtga ccggcttcct gaaagacaag tcgggcatca
     1201 tgggactggt aaaaagcaac ccctccgatt acctgaagaa attcaacccc ctgcaaagcg
     1261 gcttgttcgg aaagctgaaa ggcatactgg gcgccgccaa gtttgcggat ttcctgaagc
     1321 tgaagccaac ttccaacatc gccggcaacc tgctgagcaa cctgtttttc taatacctga
     1381 gtactcaacc tgtggttgaa aatggttccg ctccctcccg ggcggaactt tttttatgcc
     1441 ctcccaagct cattaccccg gcattcagcc cctcatcatc gctcctttaa gccgcttgtc
     1501 cctgattttg gacttttttg gccccggctg taacgaaatt tgccaagctt cgtaatacct
     1561 atcaaacacg ccattcaaac cactcaacca cagctgcaat gaccgaaaga gagtacaacg
     1621 aatgtgtaaa acagtacgcc gacaacgtgt accggtttat cgtaaaaaac ctccggcata
     1681 ccgaggatgc acaggacgtg gtacagagtg cctttgaaaa actgtgggcc aaccgggagc
     1741 aggtggatcc tgccaaagcc aaatcgtacc tgtttacgat tgcttacaac cagatgatcg
     1801 accacctgcg caaggtgaaa cgcatgagct acaaggaaga gattccggaa gcggccctcg
     1861 gtaccggcga ccaaccccgg ctgtacctga aaaaagcact cgaaaacgcc ctggctaccc
     1921 tgaacgaaac acaacgcagc ctggtgatgc tgaaagacta cgaaggatac agctacgaag
     1981 aaataggaaa gatcatggac ctgaatgaaa gccaggtgaa agtgtacctg caccgggcaa
     2041 gggtgcagct gcgcaactac ctggtgcgat tggaaaatgt ggtgtaagca acgaggactc
     2101 cggcatgaat gatcgttaac ctccaacaaa aacaaaatga acatcaacag aaataattac
     2161 gaaaccttct tcctcctgta tgtggacggc gaaatgagcc cgcaggagat gctggaggtg
     2221 gacgctttct gccagaagca ccccgacctg gccgatgagc tccagctgtt gatggaaaca
     2281 aggctgagcc ccgaagcaga cattgctttc atcaataaag cagcgctgct gaaactggaa
     2341 gaatgggacg ccgaaaacct gaccaacgaa caactcgcct tgctggaaaa actggagcaa
     2401 ggagcaaata cccacaccac tgaaattccc gataccctca cccaaaagga atggacactg
     2461 ctgcagcaaa cccaattgcc tgccgaagcc gtgagcatgc ctcacaaaca cacccttatc
     2521 aaagccctgc aatgggatgc cgacaacctg accagccagc agctgcaatt gctggaagcc
     2581 ttggaagatg gagccgcagt acccgcaggc attttgtccg accccgaact gaacaaggat
     2641 tggctgctgc tgcaacaaac acaaatgcag cccgagcagt tggtaatgcc caacaagcaa
     2701 cgcctgtacc gccaggaagc ccctgccggc accccggtga ttcgcatggc atggtggcgg
     2761 tacgcggccg cggcggcagt gattgccggc atcggttggt ttgtattcgg tgacatgggc
     2821 aatgccggca atgatgtgcc cccgcaattg agccagcaga aaagcggtac ccctttgatc
     2881 acagaaccgg tgacagagaa ggcagataca accgaagtac agcaacagcc tttgccagag
     2941 ctgcaacaag cgccggttca gttggccgcc aacgaccgga aaaccgcaac gcccgtaaaa
     3001 gcgttggctg caaaacagcc ggccgccgtg gcgcaggatg agtcttcctc ttccagcatt
     3061 gccgcctatc gcctcagcct cagcgaagag caggcactca ggggcaaggc cagccaggat
     3121 ggccgaaaca ttgaccacaa cggcagggct cccatcagcg ccagggatta tgtgaatgct
     3181 gctgacgcag tgactgccag caacaacagc agcaacgtaa aatttgaaaa tgctgtgatg
     3241 atggaagaaa tggaagagga tgattacatc aatattggcg gtgcccgcat caaatcgcaa
     3301 aaactgcggg gagtgttgcg caccgtatca cgcaaagtca cccgcagctt cgataaaagc
     3361 accgtggcgc ctgcagaaac cgttgcggct gaattaaaat aaccaaccgc cgtatacggc
     3421 ctcctatcgt accctacaca aaacaaatac ctgtaagcat tatgaaacac tttgtactcc
     3481 tagcggcctg cactaccgcc gcgttggctg gttttggcca atccgactcc acacaaaccg
     3541 ataagcccga taccatcaag atcggcagca tgaccatcat caagaaaaaa gatggcagca
     3601 gcacaaccac caccgaatcc aaagggacca aatggtacac cggcaagcgc aaacccaagc
     3661 gggttgaaac cagctggctg aacttcgact ttggcttcaa caactttgtt gacgagaccg
     3721 attacagcag tcccgaagcc caacaatttg ctagggccac ccgtccaggt gaaccacctt
     3781 tctcggaatc cgacttcaac cttcactacg gcaaaagcat caacacgaac atctggtttt
     3841 tccgtcagca ctttcgcttc accaacgacc gcaaaatgcg attgacctat ggcttgttcc
     3901 tggaaaccaa caactaccgg tttgatcctg cattgcgcac ctcctaccaa agcggaaaag
     3961 atcctttcgt gtggcgtgat tccatcaact tccgtaaaaa caaactggca ctggattact
     4021 taaccgttcc cctgatggtt ggatttgata cccgccccgg gcgtcgcgga ttttccatcg
     4081 gtgcaggtgt cagtatgggc tacctctaca acagccgcaa caaacaggtc agcaacgaaa
     4141 gaggcaagct gaagaacagg ggcaacttcg atgttgaagt ctggaaattt cagtacatcg
     4201 gtgaaattgg aaccggcccg gttaagcttt acttcagtta tgcgccttct actgtatatg
     4261 aacgtggcct catccacaaa ccttacaacg taggtattcg actgggtgac tggcaaacct
     4321 ggtaaacgca tctccacaac atttttcaat tcaaagccgg caatgcgccg gctttgttat
     4381 tttcaacgca tgattctgta tgctcgccag ccaactcccc gcatcgcctt catggctcaa
     4441 tggctgggca tgcgcttgtt tggccatggc ctgcagatcg taagcgatag cgaaaacctg
     4501 ccaacaggag aacgggtact gaactactcc ggtgaaaaaa taacggggcc cagctaccag
     4561 gttgtgcccc acggcctgct ccatcagcaa gggatcatac ggcaaacaat tgcagtcagc
     4621 aaacaaggtt cgcttccttt cttctttgcc actgccggtg gtgatcacgg ctttgatgtg
     4681 ctggcagctt ctttttttct actgcaacga tacgaggaat attatcccgg gtatgaactg
     4741 gatgagtacg gtcgttacag ccacttaaac agcgtggcct ggcaacaagg ctttttaaaa
     4801 cgccccatcg tggacgagtg ggtggaagac ctgaaagaaa aactgtcagc acgcttcgaa
     4861 ggcatgcgct ttgcggcgtt ggaaccttct ttgcttgcca cctgcgatgt ggacatggcc
     4921 tggagctacc gccacaaagg cctgctgcgc aacatcggcg gccacttcaa cgatttcagg
     4981 aacctgcgct ggggcaaaat actggaacgc tggctggtgc tggccgggct caaaaaggac
     5041 ccattcgaga ttttgtttga gctggaagaa gcccaccgct attaccacat cccttcctgc
     5101 tattttttcc tgctggcagc gcagcaccag ggctacgata aaaacatttc gccccgcagc
     5161 aaaaacctgc agcggctgat ccgctggata caggaagaca ctgcagtggg tattcacctg
     5221 agttgggcag cctcgcagga cacatcagtg atgcaggcgg aaaagcagtg cctggaaaaa
     5281 gtagtgcagc agccagtgct gcgcaatcgc atgcattacc tcaactttcg cctgcccgaa
     5341 acctaccggc agttggcagc gttgggtatt gcagcagatt attccatggg ctacggcacc
     5401 atcaatggat tccgggccgg taccagccat ccctatcact ggtacgattt ggaaaaagaa
     5461 gcaacgactg cattgaaagt tttccctttt gcctggatgg atgccaacag cattttcgaa
     5521 cagaaggatt caccggatgc ggcctgtgcc gaatggatgc aattgtatga acccgtgaaa
     5581 gccactggcg gtactttcat taccatttgc cacaaccacc tcatgggtcg cgatgcagaa
     5641 ggaagaccct ggtggctgat gtacaaccgg gcattgaagg catgcgggta taccaaggaa
     5701 gaagaaactg gagattgaat cggttgcgga aagattgctg ccatcatttc acccaatcaa
     5761 agcttttggc tacggccttt tcccattgtg catacaaggc atcccgctgg ctgacaggca
     5821 tggcaggttg ccagcgcttt tcaatctggt gattggcttg cagggcttcc agcgaatccc
     5881 aatagccgct ggcataacca gccgcataag cggcacccaa cgccgtggtt tcatgcaccc
     5941 ggggcagttg caccggcacc tgcagcatat cggcctggaa ctgcatcagc aaattgttca
     6001 cggtcatccc cccgtccacg ttcagggcat ccagttggat gccactgtcg gcttccatgg
     6061 ctttcagaac atccagcgtt tggtaggcgg tagcttccag cacggcacgg gcaatatgtg
     6121 ccttaccggc ataacctgtg agcccggcaa tgatgccccg ggcatcggcc cgccagtaag
     6181 gggcatacag gccactgaaa gcgggcacga aatacacgcc gccattgtcg gccaccgagc
     6241 cggccagcgg ttccatttca ctgctcgatt ggatgatgcc gagattgtcg cgcagccact
     6301 gcaccatggc cccggcaaaa gcgatgctgc cttccagcgc ataatgcacc ggcgcattgc
     6361 caaacttgta cgctactgtg gtgagcatgc ccttggtgga agggacgatc ttctcgccgg
     6421 tgttcaacag catgaagcaa ccggtgccgt aagtgttctt ggcctgcccc ggttcaaaac
     6481 aggtttgacc caccagcgct gcctgctggt cgcccagcat ggccatgatg ttgatgtctt
     6541 tgaaactgcc ttcctgtatg gtgccaaagt atcctgaact cggcatgatc tggggcaaca
     6601 tgggccgggg aatgtccagg gctgccagta tttcgtcatc ccagtcgagg ctgtgcaggt
     6661 tcatgagctg ggtgcggctg gcattggtaa cgtcggtttt atgctccccg gtgtgtttcc
     6721 acaacagcca ggtgtcgatg gtgccaaaca aggcatcacc tttttcggca tcggcccgca
     6781 aaccttccac atggtcgagg agccatttca gtttcaacga actgaaataa gtggcaaagg
     6841 gcaggccggt ctttgcctgg aaggcattca gcccatgccg ggcattcatt tccttgacca
     6901 gttgctcggt gcgtgtatcc tgccatacga tggcattgta ataaggctgg cccgtatgcc
     6961 ggttccaaac caccgtggtt tcgcgttggt tggtgacgcc aatggccgcg atgttggccg
     7021 ccgtaagccc ggcattgatc agggcttccg ccgccaccag tttcaccttg gctgc
//
LOCUS       DATIQF010000854         8918 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_43771, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000854 DATIQF010000000
VERSION     DATIQF010000854.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8918
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43771"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..915)
                     /gene="ruvB"
                     /locus_tag="VLL95_14675"
     CDS             complement(<1..915)
                     /gene="ruvB"
                     /locus_tag="VLL95_14675"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF000868.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HSR40153.1"
                     /translation="MSNPNLNTDGQNQSAAEREFENAIRPVAIAEFSGQPQLIENLQI
                     FIKAAKIRGEALDHVLFHGPPGLGKTTLSRIVANELGVNIKETSGPVIEKPGDLAGLL
                     TSLEPNDVLFIDEIHRLSTVVEEYLYAAMEDFRIDIMIDSGPSARSIQINLNPFTLIG
                     ATTRSGLLTAPLLSRFGIKSRLEYYNHETLQRIILRSASILNVAIDTDAAAEISRRSR
                     GTPRIANGLLRRVRDFAQVLNDGQIDIGITQHALKALNVDEHGLDEMDNRILLTIIEK
                     FKGGPVGINTIATAVGEESGTLEEVYEPF"
     gene            1016..1444
                     /locus_tag="VLL95_14680"
     CDS             1016..1444
                     /locus_tag="VLL95_14680"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HSR40154.1"
                     /translation="MNACNSRYNKCLYFVSSALSRKVEKLAVECWKPVDLSPSHAYLL
                     MIAIEEPGVQPSFLVDQLQLTPSTITRLIEKLEEKKLVVRTTDGKLTNVYPTPKGKDL
                     LPALKNCLHDFYHKYTALLGKEQSAQMVAAMCEMTDKLPA"
     gene            1523..2188
                     /locus_tag="VLL95_14685"
     CDS             1523..2188
                     /locus_tag="VLL95_14685"
                     /inference="COORDINATES: protein motif:HMM:NF013641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HSR40155.1"
                     /translation="MNLTSQKVGVLGSGMVGRVLASAFLSEGASVMLSARSAEKQELK
                     DWQSKNTQGLIGSFADAAASADIIVLAVQGEHATNALELAGQSNLAGKIVIDATNPIS
                     HSLPPVNGVLQYFTNANESLMERLQDQFAEARFVKAFNSVGNAFMYKPDFGGTKPTMF
                     ICGNDADAKAMVTSILDNFGWEVEDMGMVQSARPIEALCILWCAPGFLRNQWTHAFKL
                     LKK"
     gene            2299..3321
                     /locus_tag="VLL95_14690"
     CDS             2299..3321
                     /locus_tag="VLL95_14690"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HSR40156.1"
                     /translation="MQYKLLGRSGLKVSELCLGTMGFGTATPWGVDKLASFSIMEAFG
                     NAGGNFMDTANRYQDGMSEEIVGDFINQRDRDYWVIATKYSLYDNQTNVNASGNNRKN
                     MMRSVEKSLKRLKTDFIDVLYLHIWDWLTPIDEVLRGLDDLVRQGKVTYIAISDTPAW
                     MVSKGQTMAELMGWSQFVALQIEYSLLQRSPERDLIPMARHYGLTVTPWAPLAGGALT
                     GKYLRNDPGRIKPDSKRLNDNAVSITKEVIRIAEELGVQPSQVALAWTMQQGFSSIPI
                     VGATRLTQMEENLGVLNVTLDAKHLEQLDAVSKIDLGFPGEFYKEDGVKLANFGGFYN
                     RIQHRG"
     gene            complement(3401..3721)
                     /locus_tag="VLL95_14695"
     CDS             complement(3401..3721)
                     /locus_tag="VLL95_14695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40157.1"
                     /translation="MEHEVSHSNPGFGKNTNGLGLFIVALSLVVLALAAYWFWHGAKA
                     EESWYRFEQTSAGHGDSHEAAGGHDEHGNEAKTEAAPAVDSTHAGHDSTAAEKPAADS
                     AAHH"
     gene            complement(3753..4481)
                     /locus_tag="VLL95_14700"
     CDS             complement(3753..4481)
                     /locus_tag="VLL95_14700"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HSR40158.1"
                     /translation="MIQYTHTLAEWLALRQSQFAAVVPFDASNDRLQLLDFTDANKTL
                     GAEVLDDTALFSEYINAQLASAGALYGYGGYDEHRTVYSRSTHFSDPEGGEPRRLHLG
                     ADIWGPAGTPVMAPLGGMVHSFAFNNNPSDYGATIILSHQLDGRQFYTLYGHLSLADL
                     QQVKEGQYVVAGQEFAHFGEAHENGNWPPHLHFQVIEDIGLNEGDYPGVCRFSEREQW
                     LANCPDPDLIIQWMPLLGSKPSNH"
     gene            complement(4478..5731)
                     /locus_tag="VLL95_14705"
     CDS             complement(4478..5731)
                     /locus_tag="VLL95_14705"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HSR40159.1"
                     /translation="MKPLFQSLMFLLLLQPGFAQPVGKNKKAIEPAPYFPGYGSWQVK
                     DPASMGMDAARLKEAVDFAIASEVKNPRSMEENHYRTFGKEPFGEGIGPFADRGDPTG
                     LIIYKGYVVAQWGDPNRCDMTHSVTKSFLATTVGLALDKGLIRSVADTVAPYVPPIEP
                     YTHGEVRRPAEDFGKPMLLYPFASAHNKTITWNDMLRQTSDWEGTLWGKPDWADRPDA
                     DASKWLNRPRAKPGSTYEYNDVRVNALALAATMVWRKPLPQVLKENIMDKIGASNTWR
                     WTGYRNAWIVLDGQPVQSVSGGGHWGGGMFINAWDMARFGLFTLHKGNWNGQQLLSES
                     FFEMATTPTTPKPDYGFMNFFLNTDKKYMPDAPASAYCHIGNGTNMIYVDPENDVVAV
                     VRWFDSKQQNEIVKRILAALPAKRP"
     gene            5922..8840
                     /locus_tag="VLL95_14710"
     CDS             5922..8840
                     /locus_tag="VLL95_14710"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HSR40160.1"
                     /translation="MKRLAYLIALAIAAQTAFSQSDALWLRYPSISPDGKTIVFGYKG
                     DLYRVDANGGSAIPLTLHEAHDMMPVWSRDGKMIAFASDRYGNFDVFVMPATGGEPRR
                     LTYNSAPDYPWDFSPDNSQVIFGSPRMTTSEAVRFYSPRLFQNLYTVSVNGGRTTLVS
                     AAGIENAHYNSKGSHIVFQDRKGYEDPWRKHHTSSVTRDIWIMDVKAQTYRQLSGFEG
                     EDREPVFSPDDQFVYYLSEKNGTQNIFKAPVMNRMAEQQLTRFDKNPVRHLSVSNNNT
                     LCFTYDGSIYTQAANGEPKKINIQIFNDGRNSTEKNVPIRGDVTDFSVSPNGKEIAFV
                     TRGEVFVTSMEGGITKRITNTPQQERMIEWGKDGKELYYSAERNDNWDIMKATIVRKE
                     EPYFYAATLLKEEAVIATDKEEFQPQVSPDGKEIAYLEERNIVKVYNIASKQSRVVLP
                     EGRNYSYADGDQYFDWTPDSKWLVVDDQQGTWQFSNAALIKADGSQTVYPVKSGFGEG
                     GAKFSMDGKLMTWVSDRDGRRGPAIQSARELDVYGVFLDQEAFDRFRLNKDEYALLQE
                     MEKKDTSKAKKDSAAKKSWNPDFSNLQNRKVKLTINSSSLSDYMLTPDGSKLYYLAAF
                     ERGYDLWVTDTRTRETKILAKLGGSPSGIEMSKDGKTLYLVNNGSLVKVDDAGKVTPV
                     AINGEMVLNTAGERQYIFEHAWRQVQKKFYDPKIHGIDWKGYKTTYAKFLPHINNNYD
                     FQELLSELLGELNGSHTGGRYSPRPDNPDVTASLGVITDESFAGPGIKVTEVIGGGPL
                     DKASSKVKAGVIIEKIDGEDVGNNIDPAKLLNRKAGKNVLLSLFDAGANTRWEETIKP
                     ISSGEESMLMYRRWVKMMEDMTDKLSGGKVGYVHVQGMNDGSFREVIDKVMGRNYNKQ
                     ALIVDTRFNGGGWLHDDLNTFLSGKKYLEFAPQGNKVNSSEPMMRWSKPSTVLMSEDN
                     "
BASE COUNT         2309 a         2302 c         2259 g         2048 t
ORIGIN      
        1 gaatggctca tacacttctt ccagcgttcc gctttcttcg cctacggcgg tggcaatggt
       61 attgatacca accggacctc ctttgaactt ttcgatgatg gtaagcagga tgcgattgtc
      121 catctcatcg agaccatgtt catctacgtt cagggccttg agtgcatgtt gcgtaatgcc
      181 aatatcaatc tgtccatcat tcagcacctg tgcaaaatcg cgtacacgac gcagcaaccc
      241 attggctatg cgaggtgtgc cgcggctgcg ccggcttatt tcggcagcgg catccgtatc
      301 aatagcaaca ttcaggatgg aggcagaccg caggataatg cgctgcagtg tttcgtgatt
      361 atagtattcc agtcggctct taatgccaaa acggctgagc aatggtgccg tgagcaaacc
      421 actccgggtg gtagcaccta tcagcgtaaa tgggttgagg ttgatttgaa tactgcgggc
      481 actgggtccg ctgtcgatca tgatgtcgat gcgaaaatct tccatggccg cgtagaggta
      541 ctcttccact actgtgctca ggcgatgaat ttcatcgatg aacaatacat cattcggttc
      601 gaggctggtg agcaagccag ccaggtcgcc gggcttttca atcaccgggc cgctggtttc
      661 tttgatattc acgcccaact cgttggccac aatgcggctg agagtggtct tgcccaggcc
      721 gggaggtccg tgaaataaaa catggtcgag tgcctcgccc ctgatcttgg cagcttttat
      781 gaatatctgg aggttctcaa taagttgcgg ctggccgctg aactcggcaa tggccaccgg
      841 ccggatggca ttttcaaatt cacgctccgc tgcactttgg ttctgcccgt cggtattgag
      901 gttgggattg ctcataactc gtactacaaa agtgggcatt cattcgaaac aagacttaaa
      961 aattattgat attgtttgta tatacaaatt gatctccttt atctttgctt tctgtatgaa
     1021 cgcatgcaat agccgataca acaaatgcct ctactttgta agcagtgcgc tgagccgtaa
     1081 ggtagagaaa ctggctgttg aatgctggaa accggttgac ctgagcccca gccatgccta
     1141 tctcctgatg attgctatag aagaaccggg cgtacaaccc agtttcctgg tagatcaatt
     1201 gcagctcaca ccaagcacca ttacgagatt gattgaaaag ctggaagaaa aaaaactggt
     1261 ggtgcgcacc accgatggca agctcaccaa tgtatacccc acaccaaaag ggaaagacct
     1321 gttgcctgcc ttaaaaaact gcctccacga cttctatcat aaatacactg ccttattggg
     1381 caaagagcaa agcgcccaaa tggtggcagc catgtgtgag atgacggaca aattaccagc
     1441 ctgatatttt tttgactcgt tatttgtata tacaaattaa acttggaatc cttttcatta
     1501 ttcacgatta aaaacattcg ttatgaatct cacttctcaa aaagttggcg tactcggttc
     1561 aggaatggta ggccgggtgc tggcatccgc ttttctttcg gaaggcgcct cagtgatgct
     1621 gtcagcacgt tctgccgaaa aacaggaatt aaaagactgg caatcaaaaa acacccaggg
     1681 cctgatcggc agttttgcag atgccgctgc atctgccgac atcattgtat tggccgtgca
     1741 gggggaacat gccaccaatg cccttgaatt ggcgggccaa tcaaacctgg cgggcaaaat
     1801 tgtgatcgac gccaccaatc ccattagcca cagccttccc ccggtaaacg gcgtactgca
     1861 atatttcacc aacgccaatg aaagcctgat ggaacgcttg caagatcaat ttgccgaggc
     1921 caggtttgta aaagctttca acagcgtagg gaatgctttt atgtacaaac ccgactttgg
     1981 aggcaccaag cctaccatgt tcatttgtgg caatgatgct gatgccaaag cgatggtcac
     2041 ttctatactc gacaactttg gctgggaagt ggaggacatg ggcatggtgc aatcggcccg
     2101 accgattgaa gccctttgca ttttgtggtg cgcaccaggc ttcctgcgaa atcaatggac
     2161 acatgcattc aaactgctga aaaagtaagg caggcttgtg catgttttgc aaggagtgtt
     2221 ccagcccttg caggaaagga atcaaacgaa aagttcattc aatattcatc acctttgaat
     2281 ttcaacaaaa aggtatccat gcaatacaaa ctccttggcc gcagtggtct taaagtaagt
     2341 gaactctgtc ttggcacgat gggctttggc acagccaccc catggggtgt cgacaaactg
     2401 gccagctttt cgatcatgga agcatttggt aatgccggcg gcaacttcat ggatacagcc
     2461 aaccgttacc aggatggcat gagtgaagaa attgtcggcg atttcatcaa ccagcgtgac
     2521 cgcgattatt gggtgattgc caccaagtac agcttgtatg acaaccagac caatgtgaat
     2581 gccagcggca acaatcgcaa gaacatgatg cgcagcgtag aaaaaagcct gaagcggttg
     2641 aagactgatt tcatcgatgt gctctacctg cacatttggg attggctgac gccgatagat
     2701 gaagtgttgc gtgggctgga tgacctggtc cgccagggta aggtgaccta cattgccatc
     2761 agcgatacgc cggcatggat ggtgagcaaa ggccaaacca tggccgagtt gatgggatgg
     2821 agccagtttg tggctttgca gattgaatac agcttgctgc agcgcagccc tgaacgcgat
     2881 ctcataccga tggccaggca ttatggcctc accgtaacgc catgggcacc actggccggc
     2941 ggggcattaa cgggaaaata tttgcgcaac gatccgggac gcatcaaacc cgacagcaag
     3001 cgcctgaacg acaatgctgt cagcattacc aaagaggtca tccgcattgc ggaggaattg
     3061 ggcgtacaac ccagccaggt agcattggca tggaccatgc agcaaggctt ttcctccatt
     3121 cccattgtgg gggctaccag gcttacgcaa atggaagaaa acctgggtgt tttaaatgtg
     3181 acgctggatg ccaaacattt ggaacagctg gatgccgtga gtaaaattga tctgggcttc
     3241 ccgggagagt tttacaaaga ggatggcgtg aagctggcca actttggcgg attttacaac
     3301 aggatacaac atcggggttg agaattccca acccggtaaa tgataaagcc tgctcactga
     3361 attgagcagg ctttatttat gccattaaag caaaaaaata ttagtgatga gcagcgctgt
     3421 cagcagcagg cttttcagca gcagtgctgt catggccggc gtgggtggaa tctacggcag
     3481 gagcagcctc agtctttgct tcattgccat gctcgtcgtg accaccggcc gcttcatgac
     3541 tatcgccatg gccggcgctg gtttgttcaa aacgatacca gctttcttcc gcttttgcac
     3601 catgccagaa ccaataggca gccagcgcca atacaacaag ggataatgct acaataaaga
     3661 gacccaggcc attggtgttt ttgccaaaac cggggttgct atgcgaaact tcatgttcca
     3721 taaggcggcg tctttaaaaa tttgctgcaa acctaatggt ttgatggttt gctgccaagc
     3781 agaggcatcc attgtatgat aagatcagga tccggacagt tggccagcca ctgttcccgc
     3841 tccgaaaacc gacacacccc gggataatct ccttcattga ggccaatgtc ttcaatgacc
     3901 tggaaatgca ggtggggagg ccagttgcca ttttcgtgtg cctcgccaaa atgcgcaaac
     3961 tcctgcccgg ctaccacgta ctgtccctct ttcacctgct gcagatcggc caggctcaga
     4021 tggccgtaca aggtgtagaa ctgcctgcca tccaactggt ggctcaggat gatggtggcc
     4081 ccgtaatcgc tgggattatt gttgaaggcg aaactgtgca ccatgccccc gagaggtgcc
     4141 attaccggtg tgccggccgg cccccagata tctgcgccca aatgcaaccg ccttggctcc
     4201 cctccctccg gatcgctgaa atgggtggaa cggctgtaca cggttcggtg ttcatcatac
     4261 cccccgtagc cgtagagggc cccggccgat gccaattgcg cgttgatgta ctcgctgaat
     4321 aacgccgtat catccagcac ttcagcgccc agggttttgt tggcgtcggt aaaatcaagc
     4381 aactgcagcc ggtcgttaga ggcatcgaat ggcaccactg ccgcaaactg actttgccgc
     4441 agcgccaacc attctgccag cgtatgggtg tattggatca tggtcgtttt gccggcaaag
     4501 ctgccaaaat tcttttcacg atttcatttt gttgtttgct gtcgaaccaa cgcaccactg
     4561 ccaccacatc attctcaggg tccacataaa tcatgttggt gccattgcca atgtggcaat
     4621 aggcgctggc tggcgcatcg ggcatatact ttttgtcggt attcaaaaag aagttcatga
     4681 acccgtaatc tggcttggga gtggtaggcg tggtcgccat ctcaaaaaat gattcactca
     4741 atagttgttg tccgttccag ttgcccttgt gcaatgtaaa caacccaaac cgggccatgt
     4801 cccaggcatt gatgaacata cccccacccc aatgaccacc gccgctcaca ctttgaaccg
     4861 gctgcccgtc gagaacgatc catgcattgc ggtagcctgt ccagcgccag gtgttgctgg
     4921 cgccaatttt atccatgatg ttttccttca gcacctgcgg cagcggtttg cgccatacca
     4981 tggtagcagc caacgccagt gcattcaccc gtacatcgtt gtactcgtag gtgctgcccg
     5041 gctttgccct tgggcgattc agccattttg aagcatctgc atccgggcga tcagcccagt
     5101 ccggcttgcc ccaaagtgta ccttcccaat cactggtttg ccggagcatg tcattccagg
     5161 tgatggtttt gttgtgggct gatgcgaaag ggtacaacag catgggtttg ccaaaatctt
     5221 ctgccgggcg gcgcacttca ccatgtgtgt agggttcaat aggtggaaca taaggcgcca
     5281 ccgtatccgc aactgaacgg atcaatccct tgtccaatgc caggcctacc gtagtagcca
     5341 ggaaactctt ggtaacactg tgtgtcatgt cgcaacgatt gggatcgccc cattgcgcca
     5401 ccacataccc tttgtaaatg atgagccctg taggatcgcc acgatctgcg aacggaccaa
     5461 tgccctcacc aaacggctct ttgccaaaag tgcggtaatg attttcctcc atgcttcggg
     5521 gattctttac ctcgctggca atggcaaagt caaccgcctc tttcaacctt gccgcatcca
     5581 tgcccatgga tgcagggtct ttcacctgcc aactgccgta cccgggaaaa tacggggcag
     5641 gttcaatggc ctttttgttt ttaccgacag gttgcgcaaa gccgggctgc aacaggagga
     5701 ggaacatcaa cgactgaaat aatggcttca tagtttctct ttagcaagct tttgttcttc
     5761 gaatgtaaag gcttcagcga aaccactttt aagtaagtgt cttcttgcaa tgtcctttgg
     5821 ttgtccaatc attttgaatc attaccgatg ctcctcaatc cttttcttga gcaatttttc
     5881 ctgcttatct ttcccaatta tccaacatca ctcttttgca tatgaaaaga cttgcctatt
     5941 taattgcact tgcaatagct gcccaaactg ctttttcaca gtctgatgcc ttatggcttc
     6001 gttacccatc catcagcccg gatggtaaaa ccattgtatt tggttacaaa ggagacctct
     6061 accgggtgga tgccaatgga ggatccgcta ttccccttac gcttcacgaa gcccacgaca
     6121 tgatgcccgt ttggagccgg gatggcaaaa tgatcgcttt tgccagcgat cgttacggaa
     6181 acttcgatgt gtttgtaatg cccgccacag gcggcgagcc ccggcgcctt acctacaata
     6241 gcgctccgga ttatccctgg gatttcagcc ccgataacag ccaggtgatt tttggcagcc
     6301 cccgcatgac cacctccgaa gcggtgcgct tttacagccc acgtctcttc caaaacctgt
     6361 acacggtatc ggtaaatggt ggacgtacca ccctggtaag cgctgccgga atagaaaatg
     6421 cccactacaa cagcaaaggt tcacatatcg tgttccagga tcgcaaaggc tatgaggacc
     6481 cctggcgcaa acaccatacc agcagcgtaa cccgcgatat ctggatcatg gatgtaaagg
     6541 cgcaaaccta tcgccaactg agtggcttcg agggagaaga ccgtgaacca gttttcagcc
     6601 ccgacgatca gtttgtgtac tatctcagcg agaaaaatgg aacgcagaat attttcaaag
     6661 ccccggtgat gaaccgaatg gcagagcagc aactcaccag gtttgacaag aacccggtgc
     6721 gccacctgag tgtaagcaac aacaacacct tgtgcttcac ctacgatggc agcatttata
     6781 cacaggccgc caacggagag ccgaagaaaa taaacatcca aatattcaat gatgggcgca
     6841 acagcactga aaagaatgtg cccatccgcg gcgatgtcac tgatttttca gtaagcccca
     6901 acggcaaaga gatcgctttc gttacccgag gtgaagtgtt tgtaacctca atggaaggtg
     6961 gcatcaccaa gcgcatcacc aacacgcccc agcaggagcg catgattgaa tggggtaagg
     7021 atggaaagga actgtactac agtgctgaac gcaacgacaa ctgggatatc atgaaggcta
     7081 ccattgtacg caaagaagag ccttatttct acgcggctac actcctcaaa gaggaagccg
     7141 tgatcgctac cgacaaagaa gaattccagc cacaggtgag ccccgatggt aaagaaatag
     7201 cctacctcga agaacgcaat attgtgaagg tgtacaatat tgccagcaag caaagccgtg
     7261 tggtgttgcc ggaaggccgc aactacagct atgccgatgg cgaccagtac tttgactgga
     7321 cacccgacag caagtggctg gtagtagacg atcagcaggg cacctggcaa ttcagcaatg
     7381 ccgccctcat aaaagccgat ggcagccaaa cggtgtaccc ggtgaagagt ggctttggtg
     7441 aaggcggtgc caagttcagc atggatggca aactgatgac ctgggtgagc gaccgcgatg
     7501 gccgccgtgg ccctgccatc caaagtgccc gtgaattgga cgtatacggc gtattcctcg
     7561 accaggaggc atttgatcgc ttcaggctga acaaggatga atatgcactg ctccaggaaa
     7621 tggagaaaaa agataccagc aaggccaaaa aggattcggc tgccaaaaag agctggaacc
     7681 ctgatttcag caaccttcaa aaccgcaagg tgaagctcac catcaacagc agcagcctca
     7741 gcgattatat gctcactccg gatggcagca agttatatta cctcgcagct tttgaaagag
     7801 gttatgactt gtgggtgacc gatacccgca cccgcgaaac caaaatactg gccaaactgg
     7861 gcggcagccc cagcggcata gagatgagca aggatggtaa gactttgtac ctggtaaaca
     7921 atggcagcct ggtgaaagtg gatgatgccg gcaaagtgac acccgtagcc atcaatggcg
     7981 aaatggtgct gaatactgcc ggcgaacgcc aatacatttt tgaacacgcc tggcgccagg
     8041 tgcagaagaa gttttacgat cccaagatcc atggcatcga ttggaaggga tacaagacga
     8101 cctatgccaa attcctgccg cacatcaaca acaactacga cttccaggaa ctgctcagcg
     8161 aattgcttgg cgaactcaac ggcagccata ccggtggccg ctacagccca cgccccgaca
     8221 atcctgatgt gacggcatca ctgggtgtca tcaccgatga aagctttgcc ggccccggca
     8281 tcaaggtgac tgaagtaatt ggcggcggcc cgctggacaa agccagttcc aaagtgaagg
     8341 caggcgtcat cattgagaaa attgatggcg aggacgtagg caacaatatc gaccctgcca
     8401 aactgctcaa ccgtaaggcc gggaagaatg tgctgttgtc attgtttgat gcgggagcga
     8461 atacccgctg ggaagaaacc ataaagccca taagcagcgg ggaagaaagc atgttgatgt
     8521 accgccgctg ggtgaaaatg atggaagaca tgaccgacaa actgagtggt ggcaaagtag
     8581 gctacgtaca tgtgcaaggc atgaatgacg gcagcttccg cgaagtgatc gacaaagtga
     8641 tgggacgcaa ctacaacaag caggcgctga tcgtagatac ccgcttcaat ggaggtggct
     8701 ggctgcatga cgatctcaat actttcctga gtggcaaaaa ataccttgag tttgcaccac
     8761 agggcaacaa agtgaacagc agcgaaccga tgatgcgctg gagcaaacca agcaccgtgc
     8821 tcatgagcga agacaactaa agcgatgcct tcatcttccc ctacatctac aagcaaaatg
     8881 gaattggcaa actggtaggc atgcctgtgc ccggcacc
//
LOCUS       DATIQF010000855         2657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_226551,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000855 DATIQF010000000
VERSION     DATIQF010000855.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2657
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226551"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..310
                     /locus_tag="VLL95_14715"
     CDS             <1..310
                     /locus_tag="VLL95_14715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40161.1"
                     /translation="KKDLQPLQSQIDDAIQRREYRLATRLLFLDALQQMAGKGYLHLM
                     QEKTNYQYLNEIKDEGRKAAFATCLMHYEYTWYGEFMPNEKQFHSIHQSFVTLREKWL
                     "
     gene            316..1551
                     /locus_tag="VLL95_14720"
     CDS             316..1551
                     /locus_tag="VLL95_14720"
                     /inference="COORDINATES: protein motif:HMM:NF025617.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4350 domain-containing protein"
                     /protein_id="HSR40162.1"
                     /translation="MTIWFIGACCLLTATGCINKKSSFEVDEQYTLRSNDTRPFGASV
                     CKDITGQVFPGLENEMNRYPFHSWYEKEKKAKVIKREQVYVLLSPGVIAWENEAEAMK
                     EFVERGNTLLLVTDKMNKEMQEQLALRIIDDATLLPFMPVPPMRDTWLQLYDTARLSD
                     RQFSYFYAPMAQRLSAGSQYLSVNTLVTNDAGRPSALRIRMGRGQLIVATNARSFSNY
                     FLLNHHNLHYLLGLYAYLPAYPSRVVWDDFYSRNLYRQPEDYSILSALLSIPALRWAF
                     WILVVAGILWVLSNLRRKQKMIPVLAPNSNSTVSFVQTIAQLYYNKADHANIARKISA
                     HLSDQLRSRYYLPPNLSQTDWQIVLEHKALLNKEEADQLAALMQKAQEPEWQSFTEQD
                     LLQMHWLAHKATHGGMKTY"
     gene            complement(1573..2289)
                     /locus_tag="VLL95_14725"
     CDS             complement(1573..2289)
                     /locus_tag="VLL95_14725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40163.1"
                     /translation="MKTLSETWFADGYIDFELKKYTLLAYLQQVNGYFNQNKLYPQLA
                     DVIFHFNNLLQFRQNKEYLKQQFPKRLNALDMERLSLLYEAMIADDEIMQELEAIIAF
                     ALRKMKGTIEGGTSIYEFVEDRMEISPVGLVPLDTNEGYFFLRDGKFSETKVYQYRLM
                     FFEKQESRYRSIRTEFVNSWQRSIVNTVENIKSELIRQHSFLPNPAVYNIETDLAFPV
                     EETLLPVAKRILVKFISEAA"
BASE COUNT          704 a          688 c          618 g          647 t
ORIGIN      
        1 caagaaggat ctgcagccat tgcaatctca aatagacgac gccattcagc gcagggaata
       61 ccggctcgcc acccgcctgc tcttcctgga tgcattgcag cagatggccg gcaaaggata
      121 cctgcacctg atgcaggaaa agaccaacta ccaatatctc aacgagatca aggacgaagg
      181 gaggaaagcg gcatttgcca cctgtctcat gcactacgaa tacacctggt acggcgagtt
      241 catgcccaat gaaaaacagt ttcattccat tcaccaatca tttgtgacgc ttcgcgaaaa
      301 atggctctga atagattgac catatggttt attggggcct gctgcctgtt gactgccaca
      361 ggttgtatca acaaaaaatc cagcttcgag gtagatgagc aatacacact gcgcagcaat
      421 gacacaaggc catttggcgc cagtgtgtgt aaagacatta caggccaggt gtttccaggg
      481 ctggaaaatg aaatgaacag gtatcctttc cactcctggt acgaaaagga aaagaaggca
      541 aaagttatca aaagagaaca ggtgtatgtg ctgttgtcac cgggcgtgat tgcatgggag
      601 aatgaagcgg aagccatgaa agaatttgtg gagcgaggca atacgctgct gctggtaacc
      661 gacaaaatga acaaggaaat gcaggagcaa ctagccttgc gcattatcga cgatgccacg
      721 ctgctaccat ttatgccagt accacctatg cgtgacacct ggcttcaact gtacgacaca
      781 gcccgtttgt ccgatcgcca gttttcctat ttctatgctc ccatggcgca acggctgtct
      841 gccggttcgc aatacctgtc ggtaaacaca cttgttacca atgatgccgg caggccttct
      901 gcattgcgaa tccgcatggg acgcggccag ctcatcgtgg ccaccaatgc aagaagtttc
      961 agcaattact ttttgctcaa tcaccacaac ctgcattacc tgcttgggct gtacgcctat
     1021 ctccccgcct atccaagccg cgttgtgtgg gacgattttt acagcaggaa tctgtaccgc
     1081 cagcccgaag actactccat cctctctgcc ctgctttcca ttcccgccct gcgatgggcc
     1141 ttctggatac tcgtagtggc cggcatcctt tgggtgctca gcaatttgcg ccgcaaacaa
     1201 aaaatgatac cggtactcgc ccccaacagc aacagtaccg tcagctttgt gcaaaccatt
     1261 gcccagttgt attacaacaa agccgatcat gccaatattg cccgcaagat ctctgcacac
     1321 ctgtccgatc aattgcgcag caggtattac ctgccgccca acctttcaca aaccgactgg
     1381 cagattgtat tggagcacaa agctttgctg aacaaagaag aggcagacca actggctgcg
     1441 ctgatgcaaa aagcacagga accggaatgg caaagcttta cggaacaaga cttgctgcaa
     1501 atgcattggc tggcccacaa agccacgcat ggcggaatga agacatatta gatctggata
     1561 ccaggatttt gatcaggcgg cctcactgat gaactttacc aaaatacgtt tggctaccgg
     1621 caacaaggtt tcttccactg gaaaagcgag gtcggtttcg atattgtaca ccgccgggtt
     1681 tggcaaaaaa ctgtgctgcc tgatcaactc cgacttgatg ttttcaacgg tattcacaat
     1741 gcttcgctgc cagctgttca caaactcggt gcgtatgctg cgatatctcg attcctgctt
     1801 ttcgaaaaac atcaggcggt actggtacac tttggtctca ctgaacttcc catcccgcag
     1861 aaagaagtat ccttcattcg tatccaaagg cacaaggcct accgggctta tctccattcg
     1921 atcttccacg aattcataga tagaagtccc tccttcaatg gtgcctttca ttttgcgcag
     1981 cgcaaaagct atgatggctt ccagttcctg catgatctca tcatcggcta tcatggcttc
     2041 atacaacaaa ctcaaccttt ccatatccag cgcattcagg cgtttgggaa actgctgttt
     2101 caaatactct ttgttttgac ggaactgaag caggttgttg aaatgaaaga tcacatctgc
     2161 cagttgcggg tacagtttgt tttggttgaa gtagccgttt acctgctgca aataagccag
     2221 cagggtgtat ttcttcaatt cgaaatcgat gtagccatcg gcaaaccagg tttctgagag
     2281 tgtcttcata gctattccct ttggtgaata caggcaatga ttgccacctt aaattatcga
     2341 attgccacaa aacaggaaac tatgtgtgga taggaaagtg caaaagtttg acaaccggtg
     2401 ccgcgacatg aagaagttgc caaaatagaa caggcgccgt tttacaacag cgcctgctcc
     2461 tattttcttg tcaacgatcc gtcagaaatt gcggttgata tcaaacgcct cgagttcgcg
     2521 ggccaccgcg ttgaggaagg tgctgcccaa tgcgccatcg atgatgcgat gatcgtagct
     2581 caggctgatg tacatcatat gcctgatggc aatgctgtcg ccctgtgcgg tttcaatcac
     2641 cacggggcgc tttttga
//
LOCUS       DATIQF010000856         1863 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_59202, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000856 DATIQF010000000
VERSION     DATIQF010000856.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1863)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1863)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1863
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59202"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1533
                     /gene="dnaX"
                     /locus_tag="VLL95_14730"
     CDS             <1..1533
                     /gene="dnaX"
                     /locus_tag="VLL95_14730"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR02397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HSR40164.1"
                     /translation="IRELVTQIRFAPQEGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP
                     SYAKFILATTEKHKILPTILSRCQIFDFKRITNADTVEHLQEIAEKEHIQAEKSALQL
                     IAQKSEGCMRDSLSILDKIVSFTDAKLTYQNTLEHLNLLDEDYYFQLLDALTRQDVTN
                     ALLLFDQINRKGFEGNTVLEGFAEFLRNLMVSKDPKAAMLLDVLEGMQERYASAAEKI
                     SLSYLVSALNVVSEATMQYRGVHNKRLHVELCLIKLCYLQQAIELMAEPGGQVIKKSR
                     VSGPVAIGTKPVAPVYGKVPQPSGEARLDIEVPPPSKETAPPPPPVSKVPRPEPAPQA
                     PQPANVTPPAAAPVPAPPVQGNGSKMSLREKLMQEQLQKKQQQNPVEMRDPVMEEVLE
                     LWGQMRDQLKAQAKHVAVTSMNLASMRLEGLSVIVRSVSLLNQKFLETEFATEFTERL
                     RQRFHNQRVHLKFEVDESAMEQPKDLEPKYLNATERLKLMVEQYPLVLELKERLKLDL
                     GF"
BASE COUNT          525 a          477 c          490 g          371 t
ORIGIN      
        1 atccgcgaac tggtgacgca aatccgcttt gcaccacagg aaggcaaata caagatatat
       61 atcattgatg aggtgcacat gctgagccag gcggccttca acgcgttttt gaaaacactg
      121 gaagagccgc catcctacgc caaattcatc cttgccacca ccgaaaagca caagatcctg
      181 ccgaccattc tcagccgttg ccagatcttc gatttcaagc gcatcaccaa tgccgatacc
      241 gtagagcatt tgcaggagat tgcggaaaaa gaacacatcc aggccgagaa atctgccctg
      301 caactgatag cgcaaaaaag cgaaggatgc atgcgtgatt cgctcagcat cctggacaag
      361 atcgtgagtt tcacggatgc gaaactcact taccagaaca cgctggagca cctgaacctg
      421 ctggatgaag attattattt ccagttgctg gatgcactca cccggcagga cgtcaccaat
      481 gcacttttgt tgttcgacca gataaaccgc aaaggatttg aaggcaacac ggtgctcgaa
      541 ggattcgccg aatttttgcg caacctgatg gtgagcaaag atcccaaagc cgcgatgctg
      601 ctggatgtgc tggagggcat gcaggagcgt tatgcttccg ccgccgagaa aatttcattg
      661 agctatttgg tgagtgccct caatgtggtg agcgaagcaa ccatgcaata ccgtggcgtg
      721 cacaataagc gccttcacgt ggaattgtgc ctgataaaac tctgctatct ccagcaggcc
      781 attgaattga tggccgagcc tggtggccag gtgatcaaaa agagcagggt aagcggcccg
      841 gtggcaatag gaacaaaacc tgtggcacca gtttacggta aagtacccca gccatcaggt
      901 gaggcgcggc tcgacattga agtgccgcct ccttccaaag aaacggcacc gccaccaccg
      961 cccgtatcca aagtgccgcg gccggagcct gctccccagg cgccacaacc tgcaaacgtt
     1021 acaccccctg ctgctgcgcc agtgcctgcg ccgccggtgc aaggaaatgg cagcaaaatg
     1081 tcgctgcgtg aaaaactgat gcaggagcag ttgcaaaaaa agcagcagca aaatccggtt
     1141 gaaatgcggg atcctgtgat ggaggaagtg ttggaactct ggggacagat gcgggatcaa
     1201 ctgaaagccc aggccaaaca tgtcgctgtc accagcatga acctggcgtc gatgcggctg
     1261 gaaggattgt cggtgatcgt cagaagtgtt tccttgctga atcaaaaatt cctcgaaaca
     1321 gaatttgcga cagaatttac cgagcgtttg cggcagcgtt ttcacaacca gcgggtacac
     1381 ctgaagtttg aagtggatga atcggcgatg gagcagccca aagacctgga gcccaaatac
     1441 ctgaacgcca ccgaaagact gaaactgatg gttgagcagt accccctggt gctggaactg
     1501 aaggaaaggc taaaacttga ccttggtttt tgatgcctgg cgaaaaaaga aagaagccgg
     1561 caactgtact ttttcacctg caaagtcgaa actttaactg ccattgcagg ctttcctggc
     1621 gcaaagcgaa gccttcaata ggaccttgaa ccatcaattg gttggggagt atgccatttt
     1681 ccccgaaatt cgcacctctt aaacgacagc aaccgaagat atatggccga agtaataaaa
     1741 atgccccgac tgagtgatac catgaccgaa ggcgttattg ccgcatggca caagaaagtg
     1801 ggcgatccgg tgaagaaagg cgaattgctt gccgaagtgg aaaccgacaa agccaccatg
     1861 gaa
//
LOCUS       DATIQF010000857         6544 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_43810, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000857 DATIQF010000000
VERSION     DATIQF010000857.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6544
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43810"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..998)
                     /locus_tag="VLL95_14735"
     CDS             complement(<1..998)
                     /locus_tag="VLL95_14735"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSR40165.1"
                     /translation="MAYDVIVLGSGPGGYPAAIRASQLGKKVAIIEKESLGGVCLNWG
                     CIPTKALLKSAQVYEYLKHAQAYGINASGTHDFDAVVKRSRGVADKMSKGVQFLMKKN
                     KIDVILGFGKLVSPTKIEVTAADGSKQIVEGKNIVIATGGRARQLPSLPIDGKKIIGY
                     REAMVLPQQPKSMIVVGSGAIGVEFAYFYNSMGTKVTIVEFLPRIVPVEDEDISKELE
                     KQYKKQGIAIHTSAEVTKVDTSGAGVVATVKTKDGEMTLEADIVLSAVGVVANIEGIG
                     LESLGIKTDKGKIVVDQYQQTSVPGVYAIGDCTPGQALAHVASKEGINAAEHIAGH"
     gene            1219..3906
                     /locus_tag="VLL95_14740"
     CDS             1219..3906
                     /locus_tag="VLL95_14740"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: protein motif:HMM:NF014499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004134 - 4-alpha-glucanotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HSR40166.1"
                     /translation="MTTIHFYLRYHTTYGQTFFVSGNIPELGNGDPQKAMPIHYLNDE
                     LWHHSIDIPANTPAFTYKYILRNADGTEFIEWPTDRVIDLAKLKSPEVQVVDYWNYAG
                     EFENAFYTQPFKQTLFQYAGEKLKATAKKGVNHIFRVKAPLLAATETMCLLGSDESLG
                     NWDTEKCIPMRKEGNWYNVELNLAKAQFPFAYKYGVFDTEKQAFVRFEEGPNRMAYGM
                     VKKQVMIFHDGFAALPNTTFRAAGVAIPVFSLRTSNGLGVGEFADIKSLADWSKKVGM
                     RVIQLLPVNDTTATHTWTDSYPYAAISAFALHPQYINLELVAGKKHSALLKGLKKIKE
                     ELNALPDIDHEAVMTAKWKYLKTLYTAMKEEWLNDKAYQAYYEENKHWLEPYAAFCYL
                     RDKYKTTEFQTWKTHSAYDAKNVGKLFSTSSKSFDAVGLHLFIQWHLHLQLKDAVDYA
                     HSHGLIVKGDIPIGIYRYSCDAWQQPELYNMDAQAGAPPDDFAVKGQNWGFPTYNWSR
                     MQADGFAWWKQRFAQMSLYFDAFRIDHILGFFRIWSIPLHAVQGIMGRFVPCLPVHIN
                     EFAEKGIWFDYVRYCHPFINEEIIFQSFGERADYAKETFLNNIGWGNYELKDAFNTQR
                     KVEAWFKENPGAETWMEDKLFDLISNVILFEEPASNGSEFHFRIGMEGTASFQWLESH
                     VQNQLKDLFVNYFFRRQDGFWRTQAMQKLPALKASTDMLICGEDLGMVPDCVPGVMKD
                     LGFLSLEIQRMPKDPTRKFFHPADAPYLSVVTPSTHDMSTIRGWWEENPENTQQFYNE
                     QLGQMGGAPFYCEPWINRAIITQHLYSPAMWSIFQVQDLLGSSAELRRENPNDERINV
                     PANPKHYWRYRMHLSLDELNNASSFNEDLSLLLRSSGRA"
     gene            complement(3966..4370)
                     /locus_tag="VLL95_14745"
     CDS             complement(3966..4370)
                     /locus_tag="VLL95_14745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40167.1"
                     /translation="MIRALFVVGSIWMCSHGFGQGVPEAEIDIERLNKMRGKDKLVAD
                     PNSNQKLPSLLTKNIKELTPEYVGNNSLGEIYVLPQDNMPMLKPYLQQENAMPGTQVR
                     KQPDEADLPGKIPNAISPKVYRFVPDNQPPKK"
     gene            complement(4422..5414)
                     /locus_tag="VLL95_14750"
     CDS             complement(4422..5414)
                     /locus_tag="VLL95_14750"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008720 - D-lactate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0070404 - NADH binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HSR40168.1"
                     /translation="MPKIVFYSAQPYDIQFFERENESFGFELDFFDTQLRSHSIQLAE
                     GAEVVCIFVNDHCHAGIIEKLAALGVKVIALRCAGFNNVDLQAAAAHGIKVVRVPAYS
                     PQAVAEHAVALIMTLNRKTHKAYNRVREQNFALNGLLGFDLYGKTVGVVGTGNIGQCF
                     ARIMLGFGCKVLAFDLIANKDLESLGVEYADLPTIFGKADVISLHCPLNDSTRHLINT
                     DTLAQMKKGVMLINTSRGGLVDTKAAIQALKSGQLGSMGIDVYEQEEKLFFRDLSANI
                     IQDDTIQRLMSFPNVIITAHQAFFTQEALTQIATTTLNNVRSFFEGQLQNEVRI"
     gene            5610..>6544
                     /locus_tag="VLL95_14755"
     CDS             5610..>6544
                     /locus_tag="VLL95_14755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40169.1"
                     /translation="MASTLAAQNASRYWQQQVNYRIDVKLNDTTHSLDGEVEMEYINN
                     SPDTLRFIWIHLWPNAYKNDRTAFAEQRLLERELDFYFSDANQKGYINRLNFSADGKP
                     ATLEDHPAYIDVAKLILPQPLLPGKSAKLHTPFHVQLPELISRSGHKGQFYAIAQWFP
                     KAAVYDQKGWHPMPYLSMGEFYANFGNYDVHISLPDNYAVAATGLLQNEEEIKWLQSR
                     TQRIITAKPAAKKTTPKAKSSVNDGTPPSSKVMKTLHYKAEQVIDFAWAADKRFLVKY
                     DTVMLTSKPVAVWNFFLPEDEERWKNSMQFSKRAL"
BASE COUNT         1736 a         1651 c         1497 g         1660 t
ORIGIN      
        1 ttgtggcctg caatatgctc ggcggcattg atgccttcct tgctggctac gtgtgccagt
       61 gcctgtccgg gtgtgcagtc gccaatggca tacacccctg gtacggaggt ttgctggtat
      121 tgatccacca cgatcttgcc cttatcggtc ttgataccga ggctttccaa tccaatgcct
      181 tcaatgttgg ctactacgcc aaccgcactc agcacgatgt cggcctccaa agtcatttcg
      241 ccgtccttgg ttttcacggt agctaccaca ccggcaccgc tggtgtcaac cttggtcacc
      301 tcggcactgg tatgaatggc aatgccctgc ttcttgtatt gcttttccag ttctttagaa
      361 atgtcttcat cttccaccgg cacaatacga ggcaggaatt ctacgatggt cactttggta
      421 cccatgctgt tgtagaagta ggcaaactca acgccgatgg cgccgctgcc cactacaatc
      481 atgcttttgg gctgctgtgg caacaccatg gcttcgcgat agccaatgat ctttttgcca
      541 tcaatgggca ggctgggcaa ttggcgggca cgaccgccgg tggcaatgac gatgttcttt
      601 ccttctacaa tttgcttgct gccatcggct gcggtcacct caatttttgt aggcgacacc
      661 agcttgccaa agccgaggat cacatcaatc ttgttcttct tcatcaggaa ctgcacgccc
      721 ttgctcattt tgtctgccac gccgcggctg cgttttacaa ccgcgtcaaa gtcgtgggtt
      781 ccgctggcgt tgatgccata ggcctgcgca tgcttgagat attcatatac ctgggcgctt
      841 ttcagcaatg ctttggtagg aatgcagccc cagttgaggc aaacaccacc caggctttcc
      901 ttttcaatga ttgccacttt ctttcccaat tgagatgcac ggatagcagc gggataaccg
      961 ccaggaccac tacccaacac aattacatcg tatgccatga ttataaattg tttagaaaat
     1021 ccttgaggat agatgaaaaa cgctgcgaaa ctaaggcaat ccttccgaaa gcaccagaca
     1081 gcgtcataat gtattggcaa tttgttgaca gctcgctggt tggggacaaa aattagggca
     1141 gctacttagc gtaaagtcta cacattatca ggtaaatatt acatttgcaa cactccttat
     1201 acaacaactc ttgccagcat gacgactatt catttctatt tgcggtacca tactacttac
     1261 ggccaaacat tttttgtatc cggaaatatc cctgaactgg gcaacggaga tccgcaaaaa
     1321 gcgatgccca ttcactacct gaacgatgaa ttgtggcacc attcaattga tattcctgcc
     1381 aatacaccgg cattcacata taaatacatt ttgcgcaacg cagacggtac tgaatttata
     1441 gagtggccaa ccgaccgggt cattgacctg gccaaattga aatcgccgga agtgcaggtg
     1501 gtggattact ggaactatgc cggtgaattc gaaaatgctt tttacacgca gcctttcaaa
     1561 caaaccttgt ttcagtatgc cggcgaaaaa ttaaaagcga ctgccaaaaa aggtgtcaat
     1621 catattttca gggtaaaagc gccattgctt gcggccaccg aaaccatgtg cctgctgggt
     1681 agcgatgaat cccttggcaa ctgggataca gaaaagtgta tacccatgcg caaggaaggc
     1741 aattggtaca acgtagaact gaacctggca aaagcacagt tcccatttgc ctacaagtat
     1801 ggtgttttcg ataccgaaaa acaggcgttt gtgcgctttg aagaaggccc gaaccgcatg
     1861 gcttatggca tggtcaaaaa gcaggtaatg atttttcatg atggatttgc cgctttgccc
     1921 aacactactt tccgtgctgc cggtgtggcc attcccgttt tcagcttgcg tacttccaat
     1981 ggactcggtg taggcgaatt tgccgacata aagtccctgg cagactggtc gaagaaagta
     2041 ggcatgcgtg ttatacaact gctgccggta aatgacacta ccgccacgca tacctggact
     2101 gacagttatc cctatgctgc tatatcagct ttcgcattgc acccgcaata catcaacctg
     2161 gaactggtgg ctggcaaaaa gcacagcgcc ttgctcaaag ggctcaaaaa aattaaggaa
     2221 gagctgaatg ccctgcccga tatagaccac gaagcagtaa tgactgccaa atggaaatac
     2281 ctgaaaacat tgtacacagc catgaaagaa gaatggctga atgacaaagc ttaccaggcc
     2341 tactacgagg aaaacaaaca ttggctggag ccgtatgcgg cattctgtta cctgcgtgac
     2401 aaatacaaaa ccactgaatt ccaaacctgg aaaacgcaca gtgcctatga tgccaaaaat
     2461 gtcggcaaac tgttcagcac ttccagcaaa tcctttgacg ctgttggctt gcacttattc
     2521 attcaatggc atttgcactt gcaattaaaa gacgctgttg attatgcgca cagccatggt
     2581 ctgattgtga agggcgatat tcctatcggc atttatcggt acagctgtga tgcctggcaa
     2641 caaccggaac tgtacaacat ggacgcacaa gcaggtgcgc cgcccgatga ctttgctgtg
     2701 aaaggccaga actggggctt ccccacttac aactggtcgc ggatgcaggc cgacggcttt
     2761 gcctggtgga agcaacgctt tgcccaaatg agcctttact tcgatgcctt ccgcattgat
     2821 catattcttg gattcttccg catctggagt attccattgc atgcggtgca aggcatcatg
     2881 ggccgatttg tgccctgcct gccggttcat atcaacgagt ttgccgaaaa agggatctgg
     2941 ttcgattatg tccggtattg ccatccgttc atcaatgagg aaatcatctt ccagtcgttt
     3001 ggcgaacggg ctgactatgc caaagaaact ttcctgaata atattggctg gggcaattat
     3061 gaattaaaag acgctttcaa tacccaacgc aaagttgaag cctggttcaa ggaaaacccg
     3121 ggagccgaaa cctggatgga agacaaactc ttcgacctca tcagcaatgt gatcctgttt
     3181 gaagaacctg ccagcaatgg aagcgaattc catttcagga ttggcatgga gggcaccgcc
     3241 agtttccaat ggttggaatc gcatgtacaa aaccagttga aggatctgtt tgtaaattat
     3301 ttcttccgca ggcaggatgg attctggcgt acccaggcca tgcaaaaact gccggcgttg
     3361 aaagcatcca ctgacatgct gatctgcggc gaggacctgg gcatggttcc cgactgtgtg
     3421 cccggcgtta tgaaagatct tggcttcctc agtctcgaaa tacaacgcat gcctaaagat
     3481 cccacccgca aatttttcca cccggccgat gcgccatacc tcagcgtggt tacacccagt
     3541 acccacgaca tgagcactat ccgcggttgg tgggaagaaa acccggaaaa cacccagcag
     3601 ttttacaacg agcaattggg acaaatggga ggtgcgcctt tctattgcga gccatggatc
     3661 aaccgggcca tcattacaca gcacctgtac tcacctgcta tgtggagcat tttccaggtc
     3721 caggatctgc tgggcagcag cgccgaattg cgtcgtgaaa atcccaacga tgaaaggatc
     3781 aatgtgccgg ccaatcccaa gcactactgg cgttaccgca tgcatctgtc actggatgaa
     3841 ttgaacaatg ccagcagttt caatgaagac ctgagcctct tgttgcgcag cagcggcagg
     3901 gcctgatata aaacacaaca caataaataa gcaaaaaagc ttccggcatt ttccggaagc
     3961 ttttcttatt tcttgggagg ctgattatcg ggaacgaacc tgtacacttt ggggctgatg
     4021 gcattgggga tcttgcccgg caaatccgct tcatcgggtt gcttgcgcac ctgtgtgccc
     4081 ggcatggcat tttcttgttg caggtatggc ttcagcatgg gcatattatc ctgtggcaat
     4141 acatagatct cgcctaacga gttattgccg acatattccg gcgtaagctc tttgatgttt
     4201 ttggtgagca aagacggcag tttctggttt gaattgggat ctgcgaccaa cttatctttc
     4261 ccccgcattt tgttcagcct ttcgatatcg atttcagctt caggaacacc ttgaccaaat
     4321 ccatgtgaac acatccagat acttccaact acaaacaaag cccgaatcat agcagttgat
     4381 ttttgtgttt acaaaatagc aaatgctgta aaaaatggtc gttaaattct gacttcattc
     4441 tgtagttgcc cttcaaaaaa cgaacgcaca ttattgagcg tggtggttgc tatttgcgtc
     4501 aatgcttcct gggtgaaaaa tgcctggtgg gcagtaatga tcacattggg aaaactcatc
     4561 agccgctgaa tggtatcatc ctggatgata ttggcactga gatcgcggaa gaaaagtttc
     4621 tcttcctgct catacacatc aatgcccatg ctgcccaact gcccactttt taaagcctgg
     4681 atggccgctt tggtatccac caggccaccc cggctggtat tgatgagcat cactcctttc
     4741 ttcatttgcg ccagcgtatc cgtattgatc aggtgacggg tggagtcgtt cagaggacag
     4801 tgtagagaaa tgacatccgc ctttccgaaa atggttggca aatcggcata ctctactcca
     4861 agactttcca aatccttgtt ggctatcaaa tcaaatgcca gcactttgca gccaaagccc
     4921 aacatgatac gtgcaaagca ttggccaatg ttgcccgtac caacaacgcc aaccgttttg
     4981 ccatacaaat cgaagcccaa aaggccattc agggcaaagt tttgttcccg cacccggttg
     5041 taagccttgt gcgtctttcg gttcagcgtc atgatcaaag ccaccgcatg ttcagccaca
     5101 gcctgtggtg aatacgcagg cacccttacc accttgatac catgagcggc agctgcctgc
     5161 aagtccacat tgttgaaacc tgcgcagcgc aaggcaatta ctttaacgcc aagtgcggcc
     5221 agtttctcaa tgataccggc atggcaatga tcatttacaa aaatgcaaac cacttcggca
     5281 ccttcggcca attggatact gtggcttctt aattgtgtat cgaagaaatc aagttcaaat
     5341 ccgaaggatt cattttccct ttcaaaaaat tgaatgtcgt aaggctgggc gctgtagaaa
     5401 actattttag gcatatgctg gtgtgtatta atatcgccgg caaattagcc aatcactgcc
     5461 aatctttatt gaattttaca ggagaccata cttaccaacc ccttttaaac atgactgcaa
     5521 aagctcacgg tcacaaggtt tatttattgt actttttcgc agtgaagtat tttcaattga
     5581 cccgcgtttt tacaattacc ctgctgcttg tggcatccac acttgcggca caaaacgctt
     5641 ctcgttactg gcagcagcag gtaaactacc ggattgatgt aaaactcaac gacaccacac
     5701 attcactgga tggggaggtt gaaatggaat acatcaacaa ttcgcccgat acccttcgat
     5761 tcatctggat ccatttgtgg ccgaatgcct ataaaaatga ccgcaccgct tttgccgaac
     5821 aacgattact ggaacgtgaa ctcgactttt atttttccga tgccaatcaa aaaggataca
     5881 tcaaccggct caatttttcg gcggatggca agcctgccac gctggaagac caccctgctt
     5941 acattgatgt agccaagctc attttgccac agccattgct tccgggcaaa agtgcaaagc
     6001 tgcatactcc ctttcatgtg caactgcccg aactcatcag ccggtctggc cataaaggac
     6061 aattttatgc cattgcccaa tggtttccca aggcggcagt gtacgatcaa aaaggatggc
     6121 atcccatgcc ctacctgagc atgggtgagt tctacgccaa ctttggcaat tatgatgtcc
     6181 acatatcatt gcccgacaac tatgcagtag cagccacagg attgctgcaa aatgaagaag
     6241 agatcaaatg gttgcagtcg cgtacacaaa ggattatcac tgctaaaccg gcagcaaaaa
     6301 aaactactcc aaaagccaaa tcatctgtca acgatggtac accgccttca tcgaaagtga
     6361 tgaagacgct gcactacaaa gcggagcagg tgatcgactt tgcatgggct gctgataaaa
     6421 ggttcttggt gaagtatgat accgtaatgc tgaccagcaa accagtggca gtatggaact
     6481 tctttctccc ggaagatgaa gagcggtgga agaacagcat gcagttctca aaaagagcgc
     6541 tgca
//
LOCUS       DATIQF010000858         1744 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_89503, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000858 DATIQF010000000
VERSION     DATIQF010000858.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89503"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..990)
                     /locus_tag="VLL95_14760"
     CDS             complement(<1..990)
                     /locus_tag="VLL95_14760"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HSR40170.1"
                     /translation="MTLLAIEWGVVGIKVAQLLLSLSILVILHEFGHYITARWFGCRV
                     ERFFLFFDPWFSLFKKKVGETVYGIGWLPLGGYVKISGMIDESMDKEQLALPAQPWEF
                     RSKPAWQRLIIMIGGVTVNIILAFVIYGGILMVWGERVVPNQSVKYGIAIQDSVMYDL
                     GFRDGDKILAANHEPINDFGEVTLKVLLSETVTIERDGKVQEMALPVNLIGELVEKRR
                     GNATLLTPRMPVKVAEISDTMAGAKAGLKVDDQIVSVNGKTTFFYDELKRELQAHKGD
                     SVVLGVKRNGTDVVLNAKLDNEGRLGFFPYSGIDEWQKMGVLNYSVKKYSLFEA"
     gene            complement(1107..>1744)
                     /locus_tag="VLL95_14765"
     CDS             complement(1107..>1744)
                     /locus_tag="VLL95_14765"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: protein motif:HMM:NF024684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HSR40171.1"
                     /translation="ASGGPFRGKKPNFLVNVKRDHALQHPNWSMGAKITIDSATLMNK
                     GLEMIEAKWLFGLKPSQIEVVIHPQSIIHSMVQFEDGSIKAQMGLPDMKLPIQYAMAF
                     PERIKNDFPRLDFKRCEQLTFEEPDLRTFRNLALAIEALQKGGNLPCIMNAANEIAVW
                     AFLKNRIGFLDMMAVVEQAMQKISFIEKPTLEDYFESDAAAREFAASLIRL"
BASE COUNT          432 a          480 c          374 g          458 t
ORIGIN      
        1 ggcttcgaaa agactgtact tcttcaccga gtaattgagt acgcccatct tctgccactc
       61 atcaatgccg ctgtagggaa agaaacccaa acgaccttca ttgtccaact tggcattcaa
      121 caccacatct gtaccattcc gctttacacc aagcactacg ctatcgcctt tgtgggcttg
      181 caattcacgc ttcaactcat catagaagaa tgtggttttg ccattcaccg aaacgatctg
      241 gtcatccacc ttcaaccctg ctttggcacc cgccatggta tccgaaattt cggccacctt
      301 taccggcatg cgtggtgtca gcaatgtagc attacccctg cgcttttcta cgagttcacc
      361 aatcagattc accggcaatg ccatttcctg cactttgcca tcacgttcaa tggttacggt
      421 ttcgctcagc agcactttca atgtcacttc accaaagtca ttgatcggct catggttggc
      481 ggccagtatt ttgtcgccgt cacggaaacc aaggtcatac atcacactgt cctggatggc
      541 gatgccgtat ttcacacttt ggttgggcac taccctctca ccccatacca tgaggatgcc
      601 gccgtaaatg acaaaggcca agatgatgtt gacagtaacc ccgccaatca tgatgatcaa
      661 tcgctgccag gcgggtttgc tgcgaaactc ccagggttgt gccggcaagg caagttgttc
      721 cttgtccatg ctttcatcta tcatcccgga tatcttgaca taaccgccga ggggcagcca
      781 accaatgccg tacacagttt cgcctacttt ctttttgaat aaagaaaacc agggatcaaa
      841 aaacagaaag aaacgttcca cccggcatcc aaaccatcgg gcagtaatgt agtgaccaaa
      901 ttcgtgcagt atcaccagta tggaaagcga aagcaacaac tgcgccactt tgattcctac
      961 cacaccccac tctattgcta acaaagtcat tgatcttgat ttttgaactg tcggaaactt
     1021 ttcgcttccg ctgcaaacaa aatgaattaa cgcgataaag gttttacaat ttccaccaac
     1081 gtttggttaa gtctgtgcct ttggaattac aacctgatga gcgaagcggc aaactcccgg
     1141 gccgccgcgt ctgattcaaa ataatcctcc aacgttggct tttcgataaa gctgatcttt
     1201 tgcatggcct gctccaccac cgccatcata tccaggaaac caatcctgtt tttcaggaag
     1261 gcccaaactg ctatttcgtt ggcggcattc atgatacagg gcaggttgcc gcctttttgc
     1321 aaggcttcaa tggccagggc caggttgcgg aaggtgcgca ggtcgggctc ttcaaaggtg
     1381 agttgctcgc aacgtttgaa atccaacctt ggaaaatcgt ttttgatacg ctccgggaaa
     1441 gccatggcat attgaatggg caatttcata tcgggcagac ccatttgcgc cttgatgctg
     1501 ccatcttcaa actgcaccat gctgtggatg atgctttgcg gatgtatgac cacttctatc
     1561 tgcgaaggct tcaatccgaa caaccacttg gcctcaatca tttcgaggcc tttattcatg
     1621 agggtagcgc tatcgatagt aatcttggct cccatgctcc agttggggtg ctgcaaggca
     1681 tgatcccgtt tcacgtttac caaaaagttc ggtttctttc cccgaaacgg accgccactg
     1741 gccg
//
LOCUS       DATIQF010000859         3412 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_256857,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000859 DATIQF010000000
VERSION     DATIQF010000859.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3412
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256857"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>3412
                     /locus_tag="VLL95_14770"
     CDS             <1..>3412
                     /locus_tag="VLL95_14770"
                     /inference="COORDINATES: protein motif:HMM:NF013524.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C25 family cysteine peptidase"
                     /protein_id="HSR40172.1"
                     /translation="TDPAFVFDLDANPNGNLLKIVRFDNSAHPKILIDLTNQRKYTAV
                     SVADTLWFELEPSATRRSLVLTTLNTGNSTLVRQVNTLAQKNFINFGDVANQGNYLII
                     SNKKLYNDNGNDRVEEYRAYRSSTEGGNYNARVYDIDELTEQFAYNIPKHPLAIRNFL
                     RYARTTFNASPKAVFLLGRGATYDYSPGAVDAEFLNLVPTWGHPASDNLLAAENNENV
                     TPATPIGRLGAITGAEVKDYLEKVKAFEAVQNDPDSYKAWEKKTVHMIGGNDANIVGT
                     LRNYMNSYAATISDTLVGANVSTYERLNNPNTAANNAEIQSAVKEGVGLINYFGHSSA
                     VSIDFNLNNPNELAMTQGRYPVFIANGCKASEFFDLNTLRYGQRRLTLSERFVLPKDK
                     GAIAFLSSTTVGILQYLDRFTSRWYKAAGTTQYGKTLGEIHQETIRQMMLSYTTFDQN
                     ARLTSEEYHLHGDPAIRMYPLIKPDYVIDSSSVLFNPNQPTAADDSVGYQFTIRNEGK
                     ASNDTILVKVIRIFPDNSEATIKTLTVPKLGNSQTFTGSFAIRGSRENGRNFLKVEVD
                     YTNKVTESLESNNTATKSVWIEPKGLKPSVPAQYSIVNTWPVELVATTHELKIDSGLF
                     RMEMDTTALFNSPSLYSLEDSSRNGVVRFSPANTLEPGKVYYWRTAQKLNGTLGAWQT
                     SSFTYRPGDGAGFNQEHFYQHTQSTYRAMQLDSDSRRFKFNPKANNLYIIHGIYPTSA
                     GEDLQFSVTPNGSSFIYSACLGQSIIFNVFDSLSFAAFQNPAQVLGTVGGCPPNRPGR
                     TYNYEFRFHSNDNRKKIMDFMDSLPAGQIVVARLVVDPNNDSMLVKYWMNDTVFYGSG
                     NSLYHKFRSVGFYDVDSLTTRRTFSLVYKKGDTTTFRPQWVMSDGLFDLPVMSTDIPM
                     IDTSGSISSPLIGPARSWASMQWRPDPSFSEENGLVTDSIKTYVLGIKNNGTSDTLFA
                     LNSLQDFSFDGGNAVDANVYPYMKLVQQTNDADNATPVQLNYWRVYYQPAAEGSLAPE
                     ELFYLGNKESGSRTDTLQLYRDSLHFKVAFRNLSAVAYADSLQVQVQLEDSLGNITPV
                     TSYKARALAGGDSIQVYAYMPLTNQQMVGSRKLRVSVNGQGQQPEAELS"
BASE COUNT          932 a          890 c          766 g          824 t
ORIGIN      
        1 actgatcctg cgttcgtatt tgacctggac gccaacccca atggcaacct gctcaagatt
       61 gtccgctttg acaattctgc ccatccgaaa atcctgatag acctcaccaa ccaacgcaag
      121 tacactgccg tgagtgtggc agatacactt tggtttgaat tggaaccttc tgccacccgg
      181 cgcagtttgg tgctcactac gttgaacacc ggcaacagta cattggtacg ccaggtgaac
      241 accctggcgc agaagaattt catcaacttc ggcgatgtag ccaaccaggg caactacctc
      301 attatttcca acaaaaagtt gtacaacgac aatggcaatg acagggttga agaatacagg
      361 gcctaccgct cttcaaccga aggaggtaat tacaacgcca gggtttacga cattgatgaa
      421 ctgaccgaac aatttgccta caacattccg aaacacccgc tggccattcg caacttcctt
      481 cgttatgcac gcaccacatt caacgccagc cccaaagcag tattcctgct gggacgcggt
      541 gccacctacg attacagccc cggtgctgtt gatgcagaat tcctgaacct ggtaccaacc
      601 tggggacatc ccgcatcaga caatttactg gctgcagaaa ataatgaaaa tgtaactccg
      661 gccacaccca ttggtcgctt aggagccata acgggtgcag aagtgaaaga ttacctggaa
      721 aaggtaaagg ctttcgaagc cgttcagaat gatcctgatt cctacaaagc atgggaaaag
      781 aaaaccgttc acatgatagg tggcaatgat gccaacattg tgggcacatt gcgtaactac
      841 atgaacagtt acgccgccac catcagcgat actctggtgg gtgccaatgt aagtacgtat
      901 gaaagactga ataacccaaa cacagccgca aacaatgctg aaatccaaag cgccgtgaaa
      961 gaaggggtag gcctcattaa ctatttcggg cattcttcag ccgttagtat tgatttcaac
     1021 ctcaacaacc cgaatgaact ggcgatgaca caggggcgat acccggtatt cattgccaat
     1081 ggctgcaaag cttccgaatt cttcgacttg aatacactgc gctatggaca acgcaggctc
     1141 actctatcag aaagatttgt gttgccgaaa gacaaagggg ccattgcttt tctttcatct
     1201 acaacggtag gcatcctgca ataccttgat cgattcacat cacgctggta taaagcagct
     1261 ggcaccaccc aatacggaaa aaccctgggc gaaatacacc aggaaaccat ccgccaaatg
     1321 atgctttctt ataccacctt cgaccaaaac gcgaggctta ccagcgaaga ataccatttg
     1381 catggcgacc cggcgatcag gatgtatcca ttgataaagc ctgattacgt tatcgatagc
     1441 tcctctgtcc tttttaatcc caatcagccg acggctgctg atgattctgt gggttatcaa
     1501 ttcaccattc gaaatgaagg caaagcatcc aacgacacga tacttgtcaa ggtaatccgg
     1561 attttccccg acaattcgga agccaccatc aaaacactaa cggttcctaa actgggcaac
     1621 agccaaacct ttaccggttc atttgccata cgcggcagcc gcgaaaatgg aaggaacttc
     1681 ctcaaggtgg aggttgatta taccaacaaa gtgactgaaa gccttgaatc caataacacg
     1741 gccactaagt cggtttggat tgagcccaaa gggttgaagc cctctgtgcc ggcgcaatac
     1801 agtattgtaa acacatggcc tgttgaactg gttgccacca cacatgaatt gaaaattgac
     1861 agtgggttgt tcaggatgga aatggatacc accgccttgt tcaattcacc ttcgctgtat
     1921 tcattggaag attcatcgag aaacggtgtc gttcgttttt cgccggccaa taccctggag
     1981 cctggcaaag tatattactg gcgtactgca caaaaattga atggtacatt aggtgcctgg
     2041 caaacctcct ctttcactta caggcctggc gacggtgcag ggttcaacca ggaacatttt
     2101 tatcagcaca cccaatccac ttatcgcgcc atgcagctcg attctgacag ccggcgtttc
     2161 aagtttaatc ccaaagcgaa taacctctac atcattcacg gcatctatcc taccagtgcc
     2221 ggtgaagatc tccaattcag cgtcactccc aacggctctt cgttcatata ctccgcctgc
     2281 ctcggccagt ccatcatatt caacgtattt gattcactga gtttcgcggc cttccaaaat
     2341 cctgcgcaag tgctgggtac cgtaggtggt tgcccgccta acaggcctgg cagaacctac
     2401 aattacgaat tccgtttcca ctccaacgat aatcgtaaaa agatcatgga tttcatggat
     2461 tcgttgcctg cagggcaaat tgtggtagcc cgcctggtag tggatccaaa caacgactcc
     2521 atgctggtga aatactggat gaacgatacc gtattctacg gttctggaaa ctccttatat
     2581 cacaaattcc gatccgttgg tttttacgat gtcgattccc tcaccacccg gcgtactttt
     2641 tcactggtgt ataaaaaagg cgataccaca acattccggc ctcaatgggt gatgtcggac
     2701 ggattgtttg atttgccggt aatgtccact gatatcccga tgatcgacac ttcgggttcc
     2761 atttcttcac cgctcattgg ccctgcccgc agttgggcca gtatgcaatg gcgacctgat
     2821 ccttcctttt ctgaagaaaa cggtttggtt acagacagca tcaaaaccta tgtgttgggt
     2881 ataaagaaca atggcacttc tgatacattg tttgcgttga atagtttgca ggatttttct
     2941 tttgatggcg gcaatgcagt agacgcgaat gtgtatccat acatgaaact ggtgcaacaa
     3001 accaacgacg ccgataatgc gaccccggtt caactcaatt attggcgggt gtattaccag
     3061 cctgcagccg aaggatcact ggcgcctgaa gagttgttct atctgggcaa taaggaaagt
     3121 ggttcccgga ctgacacact acaattgtat cgtgacagcc tgcatttcaa agtggctttc
     3181 cgcaacctca gcgctgttgc gtatgccgac agcctccagg tacaggtaca gttggaagac
     3241 tccctgggca atatcacccc tgttacatct tacaaagcca gggcattggc tggcggagat
     3301 tccatacagg tgtatgccta tatgccactt accaatcagc aaatggtggg cagcaggaaa
     3361 cttcgcgtct cagtaaatgg acaagggcag cagccggaag ccgagttgtc tg
//
LOCUS       DATIQF010000860         1955 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_165673,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000860 DATIQF010000000
VERSION     DATIQF010000860.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1955
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165673"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VLL95_14775"
     CDS             <1..192
                     /locus_tag="VLL95_14775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40173.1"
                     /translation="LAFIQYLRDLNQQMEIPSHIEKIEEKDLPEMIDRALDEANPLYP
                     VPKILFADDLRKIYLKLKS"
     gene            complement(315..1739)
                     /locus_tag="VLL95_14780"
     CDS             complement(315..1739)
                     /locus_tag="VLL95_14780"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSR40174.1"
                     /translation="MEPELLKTQLNEVFELQKEYTLALRTSTAEQRIALIRRLHDWIL
                     EHRQDIRDALFADFRKPNIETDITEIYPAVSEARHTIKNLKGWMRAKRVPTPVTFLGT
                     NSHIQFEPKGASLIIAPWNYPFNLAICPLISALSAGCTVIIKPSEITPNTSALIKKMM
                     DELFEPKHVFVLEGGLEASQVLLAKPFDHIFFTGSPAVGKIVMRAASEHLGSVTLELG
                     GKSPVVIAKDADLKDAARKIVSTKFINCGQTCVAPDFVLIHASKRDEFVEQLKEYIQV
                     LYISEGKGVEESPDFGRIVNDRHFDRLNGLVKEAVEQGAQLAYGGNNIPGEKFIAPTI
                     LTKVTPAMMVMQDEIFGPILPIMDYEDLDKALAFVNSMPKPLALYAFAKSDKKLSYIF
                     HHTTSGGAVANDCVLHFVQHELPFGGVNNSGIGKSHGHYGFLEFTNQKGVLKQRVGFT
                     AVTPLFPPYNRAKELIIDGLLKWF"
BASE COUNT          506 a          425 c          466 g          558 t
ORIGIN      
        1 ctggctttta tacaatacct gcgggatttg aaccagcaaa tggaaattcc ctcccacatt
       61 gaaaaaatag aggaaaagga tttgccggaa atgattgacc gggcgctgga tgaagccaat
      121 ccgctttacc ccgttcctaa gattctgttt gccgacgacc ttaggaagat ttatttgaaa
      181 ttgaagtcat aagttgatag tataaggatt gggttaataa aaaggccgcc ttttgaaatt
      241 caaaaggacg gcttttttta ggttgttact aatggagtgt gatggttgca atctgttgca
      301 gcaattgcct gacattaaaa ccatttcagc aaaccatcaa tgatgagttc tttggccctg
      361 ttgtaaggtg gaaagagggg cgtcactgct gtaaagccta ctctttgctt caacacacct
      421 ttctggttgg tgaattccag gaaaccgtaa tgcccgtgtg atttgccgat gcccgaattg
      481 ttgacgccgc caaaaggcag ttcatgttgg acaaagtgca gcacacagtc gttggccact
      541 gcgccaccag aagtggtatg gtgaaatatg tagctcagtt ttttgtcgct tttcgcgaag
      601 gcatacaatg ccagaggctt gggcattgaa ttcacgaaag ccagtgcttt gtccaaatct
      661 tcataatcca ttatgggtag gatagggccg aaaatttcat cctgcatcac catcatggca
      721 ggggttacct tggtgaggat ggtaggggca atgaatttct cacccggtat attattgccg
      781 ccataagcaa gttgagcgcc ctgttcaacg gcttctttta ccaggccatt caaccggtcg
      841 aaatgccggt cgtttacaat ccttccgaaa tcagggcttt cttccactcc ttttccttcg
      901 gatatgtata ggacctgtat gtattccttc aactgttcaa caaactcatc ccgttttgaa
      961 gcgtggatca aaacaaaatc aggggccaca caggtttggc cgcagttgat aaatttggtt
     1021 gacactattt tccgggctgc gtctttaagg tcggcatctt ttgcaatgac cactggcgat
     1081 ttgccgccca gttccagcgt cacggatccc aaatgttctg aagctgcacg cattacaatt
     1141 ttgccaaccg caggactccc ggtaaaaaag atatgatcaa agggtttggc cagcaacacc
     1201 tggctggctt cgagcccgcc ttccaaaaca aatacatgct tcggttcgaa cagttcatcc
     1261 atcatttttt tgatcaaggc ggaagtgttc ggggttattt ccgaaggctt gatgatgacg
     1321 gtacaaccgg cactcaaggc tgagatcaat ggacagatgg ccaggttgaa aggataattc
     1381 catggtgcaa tgatgaggct ggcacctttg ggttcaaatt gaatgtgcga gttggtgccc
     1441 agaaaggtaa caggggttgg cacccgtttg gcacgcatcc atcccttcag gtttttgatg
     1501 gtatgcctgg cttcggatac cgcgggatag atttccgtga tatcagtttc aatattcggt
     1561 ttgcgaaaat cagcaaacag tgcatcccga atatcttgcc tgtgttcaag aatccaatcg
     1621 tgcagccggc ggatcaaggc aatcctctgt tcggcggtgc ttgttctgag agcaagtgtg
     1681 tattcttttt gcaactcaaa tacttcgttc agctgagttt tcagcagttc aggttccata
     1741 taaattcttt tgagaaaatt gaaaaaaact aatgacgtct gaatttccga gtattctttc
     1801 ttgaatgggc acggccaaaa tttatccatt cagtatttca gcaagattcc ttgaaaaatg
     1861 gcatgttttg gcaactatgg agggtttgac caaatcgaaa gtgttggaat tgaatggtgc
     1921 ttgttcccgc ttctgaaacg cctgccatca tatag
//
LOCUS       DATIQF010000861         2394 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_211545,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000861 DATIQF010000000
VERSION     DATIQF010000861.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2394
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211545"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..813)
                     /locus_tag="VLL95_14785"
     CDS             complement(<1..813)
                     /locus_tag="VLL95_14785"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSR40175.1"
                     /translation="MRKTALLVLCLFAALLQLMAQSKTLTGKVTDEKGAPLEGVTVTA
                     KGTQVATSTKTDGTFTIAAPQNARILVFSFVGLATQEISIGSNSNFNVSMKAPGTDPL
                     DEVVVVGYQTRRKRDEAGAISTVRAAQLENLPNASIDKALQGKAAGVLVQANNGIPGG
                     NINIRIRGEGSLNASNQPLFIVDGLQLNTRNDANFTQSNPLAFLNPDDIESVDILKDA
                     ASAAIYGSNAANGVVIITTKKGKAGKTRFTANVFFVQVAPLKVLDVTNSQQAY"
     gene            complement(1118..>2394)
                     /locus_tag="VLL95_14790"
     CDS             complement(1118..>2394)
                     /locus_tag="VLL95_14790"
                     /inference="COORDINATES: protein motif:HMM:NF015155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HSR40176.1"
                     /translation="ERHTRYLRNKFLENLLVKVEYWVLQRRKLVYGITGVVLVLAVLG
                     MLQLKSVGYIVDDLPKNDLIYTDLKWFEKNFGGVMPLEIVVDAKKKGAVTRNLKTIVK
                     MDELAEYLHSFPEVAKPLSLVEGLKFAKQAYYDGDSLSYMVPNEFDMAFLGPYLKGNG
                     GGDTSSQLAKLTKTFIDSNKQQARISVNMADVGTVRLASLLDSFRLKADTIFNLASLE
                     PVNPDSPEGRQKAVFDTTYHVNFTGSSVTYLEGSRFIINGLKESIFWAFLLIALTMLY
                     LFKSVRILLCSLIPNIIPLLVTAGVMGWTGVALKPSTVLVFSVALGIAIDVTIRFLVN
                     YKQELPNHHNNILATTTSTIRHTGISIIYTSLVLVAGFVIFMFSGFGGTFALGWLTSF
                     TLLVATLTNLIFLPVIMLALLKQPAAKRGNQR"
BASE COUNT          615 a          595 c          601 g          583 t
ORIGIN      
        1 gtaagcctgc tgactattgg ttacatccag gactttcaat ggagcaacct gcacaaagaa
       61 aacattggcg gtaaacctgg ttttcccggc ctttcctttc ttagttgtga ttatgaccac
      121 tccattcgct gcgtttgagc cataaatggc ggcagatgcg gcatctttaa ggatgtcaac
      181 agattcaata tcgtccggat tcaaaaaagc cagagggttt gattgagtaa agtttgcatc
      241 attgcgtgtg ttcagctgca aaccatcaac aataaagagt ggttggttgc tggcattcag
      301 tgatccttca ccacggatac gaatattgat attaccacct gggataccgt tgttggcctg
      361 caccaataca ccggccgctt tgccttgtag ggccttatca atagaagcgt tgggcaggtt
      421 ttccaattgg gcggcacgaa ccgtggagat ggcgccggct tcatctcgct tgcggcgggt
      481 ttggtaaccc actaccacca cttcatccag cgggtcagta cctggtgcct tcatagacac
      541 gttgaaattg gagttactcc caatggaaat ttcctgggta gccaggccca cgaaagaaaa
      601 aacgaggatg cgggcatttt gcggagccgc aatggtaaag gtaccatcgg tcttggtgga
      661 ggttgccacc tgtgttcctt tggcagtaac ggtcactcct tccaggggag ctcctttctc
      721 atccgtcacc ttgccagtca gggttttgga ttgtgccatt agctgaagga gagcagcaaa
      781 aagacacaac accagcagtg ctgtttttct cataacgcta cgtattgggt ttattctaaa
      841 aaactcttag atgctctaac aacaaaaacc cttcggggtt caaccatgtg ttgaagcaac
      901 caaaaatacg cagcacagcg ataccattgt ggtgatgttt gttacgccgg tccagcgagg
      961 caattatatt ctataatggt ggattataat atgaccctgc accctgttta atcacaggga
     1021 ggggatattc atggacagcc caaacacaac tgaggtggca aagccggact ttgcatgcag
     1081 ccctcaaaat agtatcacca gcaaggcggg aaaaaaatca acgctgattt cctcgtttgg
     1141 ctgctggctg cttgagcagc gccagcatga tcacaggcag gaaaatgagg ttggtaaggg
     1201 tagccaccag caaggtgaat gaagtgagcc agcccaaagc aaaggtgccg ccaaaaccac
     1261 tgaacatgaa aatgacaaaa cccgccacca ataccagcga ggtataaatg atgctgatgc
     1321 cggtgtgccg gatggtagag gtagtggtgg ccagtatatt attgtgatgg tttggcaact
     1381 cctgtttgta attgaccagg aaccggatgg taacatcgat agcgatgcca agggctacgc
     1441 taaataccaa tacggtagaa ggcttaaggg ctactccagt ccatcccatc accccggccg
     1501 ttaccagcaa aggaatgatg ttgggaatga gggagcacag caatatgcgc accgatttga
     1561 acaggtatag catggtgagg gcaatgagca ggaaggccca gaaaatgctt tccttgaggc
     1621 cattgatgat gaagcggctg ccttcgaggt aggtaactga actgccggta aaatttacat
     1681 ggtaggtggt atcgaacacc gccttctgcc tgccttccgg gctgtcagga tttaccggct
     1741 ccagcgaagc aaggttaaaa atggtgtcgg ccttcagcct gaaactatcg agcaggctag
     1801 ccaggcgcac cgtgcccaca tcggccatat tcacactaat gcgggcctgc tgtttgttgc
     1861 tgtcgataaa ggttttggta agcttcgcca attggctgct ggtatcacca ccgccgttgc
     1921 ctttgaggta aggccccagg aaagccatgt caaattcgtt gggcaccata tagctcaggc
     1981 tgtctccatc ataataggcc tgcttggcaa acttcagtcc ttctaccagg ctcaatggtt
     2041 tggccacctc cggaaaactg tgcaggtatt ctgccagttc atccattttc acgatggtct
     2101 tcaggttgcg ggtaacggcg cctttctttt tggcatccac cacaatctcc aacggcatca
     2161 cgccgccaaa attcttttcg aaccacttca gatcggtata gatcaggtcg tttttgggca
     2221 aatcgtccac gatgtatccc accgatttca gctgcaacat gcccagcacg gcaagcacca
     2281 ataccacccc tgtaatgcca tacaccagtt tgcggcgctg caaaacccag tactctacct
     2341 tcaccagcag gttttccaaa aacttattgc gcaggtagcg ggtgtggcgc tcct
//
LOCUS       DATIQF010000862         1609 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_150723,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000862 DATIQF010000000
VERSION     DATIQF010000862.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150723"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1158)
                     /locus_tag="VLL95_14795"
     CDS             complement(<1..1158)
                     /locus_tag="VLL95_14795"
                     /inference="COORDINATES: protein motif:HMM:NF012935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HSR40177.1"
                     /translation="MSDTTQVHINSKGKEKNTYDAIVIGSGISGGWAAKELCEQGLNT
                     LVLERGRNVEHIKDYPTYNLDPWQMPHRGRMPKEALQANPLISKAAGYAEDTAHFFIK
                     DEEHPYIQEKPFDWIRGYQVGGKSLTWGRSCQRWSEWDFTAPARYGYGIEWPIGYDDI
                     APWYAHAEKFIGVCGTAEGIESMPDGEFLPGYELNCVEQHLRSTLQEKFGRHYITGRW
                     AQLTQPTELHLQQGRGQCMNRNLCMRGCPFGGYFSSVTSTLPWAQKTNRLTVRPHSVV
                     HSIIYAEQNQRATGVRVVDAQTKEVTEFFARIIFVNASALNSNLILLNSVSNRFPNGL
                     GNDNGLLGKYICFHNYRGSMGATFEGFEDKYYKARKPAECVIPNFRNLKQLD"
     gene            complement(1189..>1609)
                     /locus_tag="VLL95_14800"
     CDS             complement(1189..>1609)
                     /locus_tag="VLL95_14800"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HSR40178.1"
                     /translation="MIAITAANKENGCLQVIAGSHKMGRVEHGFAGEQVGASQRYVDL
                     ALQTMPHVYVELAAGDALFFHSNILHRSEANLSDHPRWSLISCYNRSSNPPYNEPSGS
                     STIPISMVADDALMKSEATGLGDSANFLEKEKDEALK"
BASE COUNT          360 a          436 c          379 g          434 t
ORIGIN      
        1 atccaattgc ttcaggttcc tgaagttggg gatcacacac tctgccggct ttcgggcttt
       61 gtaatacttg tcttcaaatc cttcgaaagt ggcgcccatg ctgccgcggt aattgtggaa
      121 gcagatgtac ttgcccaaca aaccattgtc gttacccaat ccattgggaa agcgattcga
      181 taccgagttg agcaaaatga gattgctgtt gagcgcagat gcatttacaa aaatgatacg
      241 ggcaaaaaac tctgtcactt cttttgtttg agcatctacc acccgcacac cggttgcccg
      301 ttggttttgt tcggcgtaaa tgatgctgtg caccacacta tgcggacgaa ctgtaaggcg
      361 gttggttttt tgcgcccatg gcaaagtgct ggtcacactg ctgaaataac ctccgaacgg
      421 acaaccccgc atgcacaggt ttcggttcat gcattggcca cggccttgct gcaaatgcaa
      481 ttcggtgggt tgtgtcagct gtgcccatcg gcccgtgatg taatgacgac caaatttttc
      541 ctgcagggtg ctgcgcaaat gttgctcaac acagttgagt tcatacccgg gcaggaattc
      601 accatccggc atcgactcga tgccttctgc tgtaccgcat actccaatga atttttccgc
      661 atgggcatac catggtgcga tatcatcata accgatgggc cattcaatac cataaccata
      721 gcgggccggg gctgtaaaat cccattcgct ccagcgctgg caactacggc cccaggtcag
      781 cgatttgcca cccacctggt atccgcgtat ccagtcgaaa ggcttttcct gtatgtaagg
      841 atgttcttcg tctttgatga aaaaatgcgc cgtgtcttcc gcatagccgg ctgccttgct
      901 gatcagcggg ttggcctgca atgcttcctt tggcatacgg ccccgatgtg gcatctgcca
      961 gggatcaaga ttatatgtcg gataatcctt gatgtgctcc acatttcggc cacgctccag
     1021 caccagggta ttcaacccct gctcacacaa ttctttcgcc gcccagccac cgctgatgcc
     1081 actgcctatt acaatggcat cgtaggtatt tttttctttg ccttttgaat tgatatgtac
     1141 ctgcgtggta tccgacataa ttgatccgct ttgtattgaa atgaacgctc acttcagtgc
     1201 ttcgtccttt tctttctcca aaaaattagc actgtcaccc aggcctgtag cctcgctttt
     1261 cattaaagca tcatccgcca ccatgctgat gggaatggtg ctgctgcctg aaggttcatt
     1321 gtaaggtgga ttgctgctgc ggttgtagca gctgatgagg ctccaacggg gatgatcact
     1381 caggttggct tcgctgcggt gtaaaatgtt gctgtgaaaa aacaacgcat cccccgctgc
     1441 caattctaca tacacatgcg gcatggtttg caaggcaagg tctacataac gctgcgaggc
     1501 acctacctgc tcgccggcaa agccatgctc tacccgaccc attttgtgcg aaccggcaat
     1561 cacctgcagg caaccatttt ctttattagc cgctgtaatg gcaatcatc
//
LOCUS       DATIQF010000863         2253 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_150750,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000863 DATIQF010000000
VERSION     DATIQF010000863.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150750"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..226
                     /locus_tag="VLL95_14805"
     CDS             <1..226
                     /locus_tag="VLL95_14805"
                     /inference="COORDINATES: protein motif:HMM:NF024639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HSR40179.1"
                     /translation="PAVYLKVAEMLQVNPAGCVVFEDTLSGIQAGLSAGMKVIGITTG
                     LSKEEMQVLPVSAVIDHYQSLSLHHITSLF"
     gene            233..1300
                     /locus_tag="VLL95_14810"
     CDS             233..1300
                     /locus_tag="VLL95_14810"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallo-hydrolase"
                     /protein_id="HSR40180.1"
                     /translation="MNHSFLFDEAVALLKQLIATPSFSKEENETAELICAFFERHGVT
                     HKRVGNNVYAFNKQYDAAKPSILLNSHHDTVKPNKGYTNDPFTPIEKDGKLFGLGSND
                     AGGCLVSLIATFLHFVDRTDLTHNVVFAASAEEEISGVNGIELVLPYLGHIDFGIVGE
                     PTKLEMAVAERGLMVIDCTAPGRSGHAARNEGENALYNAMDDINWIRNYQFDRVSDLL
                     GPSRMTVTVINTENTQHKVVPSTCKFVIDVRVNELYTFDEILDALKQHLKSSFKPRTT
                     RMKSTSIALDHPLVKAGIELGRGYYGSPTTSDKALMPFPTLKMGPGDSARSHTADEYI
                     YLSEIEEGIQTYIELVSKVVK"
     gene            1389..>2253
                     /locus_tag="VLL95_14815"
     CDS             1389..>2253
                     /locus_tag="VLL95_14815"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:NF012432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HSR40181.1"
                     /translation="MKLWSKDATATSQLVEQFTVGRDKEFDVLLAPFDVQGSMAHVAM
                     LAEQGLMTREENELVQKALEQIGDEVSKDDFELPAEVEDIHSYVELLLTQRIGEAGKK
                     IHTGRSRNDQVAVDIKLYLRSELEQVSQEVQGLFDLLLSLSEQHKDKLTPGYTHLQVA
                     MPSSAGLWLSAYAESLVDDMEMMAAAFSIANKNPLGSGAGYGSSFPLDRKSTTQKLQF
                     GTLNWNSVYAQMSRGKTEKAVATGISYVAATLSKLAYDCCLYINQNFAFIKFPDELTT
                     GSSIMPHKKNPD"
BASE COUNT          600 a          512 c          587 g          554 t
ORIGIN      
        1 gcctgccgtg tatttgaaag tggcagagat gctacaggta aatccagccg gctgcgtagt
       61 atttgaagac acgttgagtg gcatccaggc tggactgtcc gccggtatga aagtgatagg
      121 cattactacc ggcctttcca aagaagagat gcaggtgctg cctgtatctg ctgtaatcga
      181 ccattatcaa tccctttccc ttcaccatat cacctcccta ttctgatcgt ttatgaacca
      241 ctccttttta tttgatgaag ctgtagcact gctgaagcag ttgatagcca cgccttcttt
      301 ctcgaaagaa gagaatgaga ctgcagaact catctgtgcg ttttttgaaa ggcatggcgt
      361 cacccacaag cgggtgggca ataatgtgta tgctttcaac aagcagtacg atgctgcgaa
      421 gccaagtatt cttttgaatt ctcaccacga tacggtgaag cccaacaaag gctacaccaa
      481 cgatcctttt acaccaattg aaaaagatgg caagttgttt ggcctgggca gcaacgatgc
      541 cggcggttgc ctggtatcgc tcattgctac tttccttcat tttgtcgacc gtactgatct
      601 gacacataat gtggtttttg ccgccagtgc agaagaagag atcagtggtg taaatggaat
      661 cgaactcgtt cttccttact tagggcatat tgattttggc attgtgggcg aacccaccaa
      721 actcgaaatg gcagtggctg aacggggatt gatggtgatt gattgcacgg cacccggtcg
      781 ttctggtcat gcggcccgca acgaaggaga gaatgccttg tacaatgcta tggatgatat
      841 caactggatc cgcaactacc agtttgatcg ggtgagtgat ctgctcgggc ccagccgcat
      901 gacggtaacg gtgatcaaca ctgaaaacac gcagcacaaa gtggttccca gcacctgcaa
      961 gtttgtgatt gatgtgcggg tgaatgagtt gtacactttt gatgagatac tggatgcatt
     1021 gaagcagcat ctgaagagca gcttcaagcc acgcactacc cgtatgaaga gcacttccat
     1081 cgccctggat cacccgttgg taaaagcggg cattgaattg gggagaggtt attacggttc
     1141 gcctaccacc agtgacaaag ccctgatgcc atttcctacc ttgaaaatgg gacccggcga
     1201 cagtgcccga agccatacgg cagatgaata catttatttg tcggaaattg aagaaggcat
     1261 tcaaacgtat attgaattgg tatcgaaagt ggtaaagtga cttccaccac ggagtacact
     1321 gaggttgaca cagaggtctc agtgtttctc accgttcact ccttcgcctc tgtggtaaaa
     1381 tgattcgcat gaaactctgg tcaaaagacg ccaccgctac ctcgcaactg gtagagcaat
     1441 ttactgtggg aagggataaa gaatttgatg tgctgctggc accttttgat gtgcagggca
     1501 gtatggcgca tgtggccatg ctggccgagc agggcctgat gacaagggaa gagaatgaac
     1561 tggtacaaaa ggcgctggag caaattggag acgaggtatc aaaagatgat tttgaattgc
     1621 ctgcagaggt agaagatatt cattcctatg tggagctgct gctgacacaa cgcattggcg
     1681 aggctggtaa aaaaatccac actggccgca gcagaaatga ccaggtggcg gtagatatca
     1741 agctgtattt gcgcagcgaa ttggagcagg tgagccagga ggtacagggg cttttcgatt
     1801 tactgctttc attaagcgaa caacacaaag acaaactcac cccggggtat acgcatctgc
     1861 aagtggccat gccatcatcc gcaggtttgt ggttgagtgc ctatgcagag agcctggtag
     1921 atgatatgga aatgatggca gcggcctttt ctattgccaa caagaacccg ttgggtagtg
     1981 gcgccggcta tggttcttct tttcctctcg atagaaagag tactacacaa aaactacaat
     2041 tcggcacgct caattggaac agcgtgtatg cccaaatgag ccgtggtaaa acggaaaagg
     2101 cggtggcaac tggtattagc tatgtggcgg ctaccctgag caaactggct tacgactgct
     2161 gtctttacat caaccagaat tttgctttca tcaagttccc cgatgaattg accaccggca
     2221 gcagcatcat gccgcataaa aagaacccgg atg
//
LOCUS       DATIQF010000864         5089 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_13667, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000864 DATIQF010000000
VERSION     DATIQF010000864.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5089)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5089)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5089
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13667"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(152..1147)
                     /locus_tag="VLL95_14820"
     CDS             complement(152..1147)
                     /locus_tag="VLL95_14820"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HSR40182.1"
                     /translation="MKYRKFGNTPLEVSEIGFGAWAIGGTANVGGVEIGWGPTDDEVS
                     KAALTAAMDAGINFFDTADFYGLGHSEQLIGDLFGNRQDVIIASKVGQKIGEEGKIAI
                     DYTKAYIKQACEKSLQRLQRDAIDYYQLHVARVHHLEQGECIEAMEELQREGKIRYWG
                     ASLITFAPSPEAEILMQAHKGHGFQLVLNLINQLAVPVMEKAGKEGYGIIARMPLQFG
                     LLSGDIRPTATFSTEDHRSYRLTPNIIQTTLDILRTEVLPLAKQYNTSLSAFALSFIL
                     GFPEVSTVIPGIRTPRHVALNTQGLVDISFTDHQHLCRLFHDRWQPVMQMMQAQG"
     gene            1260..1667
                     /locus_tag="VLL95_14825"
     CDS             1260..1667
                     /locus_tag="VLL95_14825"
                     /inference="COORDINATES: protein motif:HMM:TIGR00640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin B12-binding domain-containing protein"
                     /protein_id="HSR40183.1"
                     /translation="MNRPIRVLVAKVGLDGHDRGAKVIATALRDAGMEVIYTGLRQTP
                     EMVVNAALQEDVDAIGVSILSGAHMTLFPRIKNLMNEKGMNDVLLTGGGIIPEEDMQQ
                     LNALGVGELFPPGTNTHDIASYITTWVKEHREF"
     gene            complement(1685..2464)
                     /locus_tag="VLL95_14830"
     CDS             complement(1685..2464)
                     /locus_tag="VLL95_14830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40184.1"
                     /translation="MITNPLNNKVIQRLLFIALLLIGYRSLGQTTDTSFGKPIFWYRV
                     SHPWALFMGAEGPPFILYDNGKILFWKNGGYNVAQISEDEKLELISELELRDTIFNKS
                     RYYNATNPDPNGEIIVTDNPSYGVFVRLDTLVIVSVYGSISSREYRKRFPSQVLKIHD
                     FVLNFETNKYTKWIPERIEVLLSDYSHSPEPPIKWPTGWPDLNSQDTRKQSGFVTSIF
                     LDKKYLSELTKLIRNRREKQAFEINGKKYFIGYRFPIPGLY"
     gene            complement(2684..2767)
                     /locus_tag="VLL95_14835"
     tRNA            complement(2684..2767)
                     /locus_tag="VLL95_14835"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2731..2733),aa:Leu,seq:gag)
     gene            complement(2849..4003)
                     /locus_tag="VLL95_14840"
     CDS             complement(2849..4003)
                     /locus_tag="VLL95_14840"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSR40185.1"
                     /translation="MFGRLFNWRTFFYVLAVLIVLGTGLYTRYVARKIEREERQRVEE
                     WVHANQAMQSSSDPTALSLANMVIINNEDMPLIAADQNGKVVDHRNLDSASIASDSTY
                     LDKKLKALKEENPPIDWLIGDSPKLVYKVYYGNTRLLKEVQYYPFIQLVILSVFIALL
                     IALITTRNRSTQNQVWAGLAKETAHQLGTPITSLRGWVEMLKEQEPGNDLVLELEKDV
                     ERLKLVSDRFGKIGSQPQLEPMNFTPLVTEMVDYMKRRAPGKVQFTVKVPQQEAMANI
                     SPTLINWVLENLLKNALDAMEGSGSITVVLEKNPKALQLDVSDTGKGISYSDWQRVFQ
                     PGFTTKKRGWGLGLTLSKRIVEQYHNGQLFVHHSEPGKGTTFRMVLPLSL"
     gene            4127..4342
                     /locus_tag="VLL95_14845"
     CDS             4127..4342
                     /locus_tag="VLL95_14845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40186.1"
                     /translation="MAHNQQHHGPDEREFGTNWVTSSKYLFYLQVFTLLAFVFGCSYN
                     LYKATRFEAKPKVEVQESSQYTPKYKS"
     gene            4434..4506
                     /locus_tag="VLL95_14850"
     tRNA            4434..4506
                     /locus_tag="VLL95_14850"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4467..4469,aa:Gly,seq:gcc)
     gene            4567..4652
                     /locus_tag="VLL95_14855"
     tRNA            4567..4652
                     /locus_tag="VLL95_14855"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4601..4603,aa:Leu,seq:taa)
BASE COUNT         1291 a         1255 c         1174 g         1369 t
ORIGIN      
        1 cattggcccg agaacacggc atcaaattgt tcctgttcag caatgccgat tcagtgatga
       61 ccacactggt ggccaaaggc attgcggagg aaaaagcaat attcagccgc taacgtgaac
      121 agcaggccat gcatctttcc aacaagatcg tttaaccctg tgcctgcatc atctgcatca
      181 caggctgcca cctgtcgtgg aacaagcggc acaggtgttg gtgatcggta aaagaaatgt
      241 ctaccagccc ctgtgtgttg agcgctacat gccgcggagt acgaataccg ggaataacgg
      301 tgctgacttc gggaaatccg agaatgaaac tcagggcaaa agcagacaag gaagtattgt
      361 actgcttcgc caggggcagc acttcggttc ttagaatatc gagcgtcgtt tgaatgatgt
      421 tgggcgtaag ccggtacgaa cgatgatctt ccgtactgaa cgtagccgtt ggcctaatgt
      481 cgccactcag caatccaaac tgcagaggca tgcgggcaat gatgccatag ccctctttgc
      541 cggccttttc cattaccgga actgccagtt gattgatgag attgagcact aattgaaatc
      601 catgaccctt gtgtgcttgc atcaatatct ccgcctcggg cgacggcgca aaagtgatga
      661 gcgaagcgcc ccaatagcgg atctttcctt cccgctgcaa ttcttccatc gcttcaatgc
      721 attcgccctg ctccaggtga tgcaccctgg ccacgtgcaa ctggtagtaa tcaatagcat
      781 cgcgttgcag gcgctgcagg cttttttcac aggcctgttt gatgtaggct tttgtatagt
      841 cgatggcgat ctttccctct tcacctatct tttgtcctac tttgctcgca atgatcacat
      901 cctgccggtt gccaaacaga tcgccgatca actgctcgga atgcccgaga ccgtaaaaat
      961 cggctgtatc aaaaaagttg atgcccgcat ccatagcagc agtaagggct gccttcgaaa
     1021 cttcatcatc cgtaggtccc cagccaattt ctacgccgcc tacattggca gtgccgccaa
     1081 tggcccaggc accaaaacct atttcgctta cttccagtgg cgtattgccg aatttcctgt
     1141 atttcatctg cgtttctcct tttgcttact ggctgcatgc caatcgtgat ataataaagg
     1201 tcatcaaaaa atggattgag cccacgtact tttgtcggcg aactacgcaa cgccataata
     1261 tgaacagacc catccgagta ctggtagcca aagtaggcct tgacggacac gaccgtggtg
     1321 ccaaagtaat agccactgcc cttcgcgatg caggcatgga agtgatctat accggcctgc
     1381 ggcaaacgcc ggaaatggta gtaaatgccg ccctgcagga agatgtggat gccattggtg
     1441 tcagcattct gagcggtgcg cacatgacct tgtttccccg catcaaaaac ctgatgaacg
     1501 aaaaaggcat gaatgatgtg ttgctgacgg gtggcggtat cattcctgaa gaagacatgc
     1561 agcaattgaa tgcactgggt gtgggcgaac tgtttccgcc cggcactaat acccatgata
     1621 tagccagcta tattaccacc tgggtgaagg aacacaggga gttttaagca aaattcgccg
     1681 ctttctaata caggccaggt atgggaaatc tatacccgat aaaatacttt ttgccattga
     1741 tttcaaaggc ctgcttttct cttctatttc ttatgagttt tgttaactcg cttaaatatt
     1801 ttttgtcaag aaatatactg gttacaaatc cgctttgttt tcttgtgtct tggctattaa
     1861 ggtctggcca acctgtaggc cattttattg gcggttctgg tgaatggcta tagtcagata
     1921 ataatacttc aattctctca ggaatccatt ttgtgtactt attggtttca aagttcaaaa
     1981 caaagtcatg gattttcagg acctgcgaag gaaacctttt tcgatactct cttgatgaaa
     2041 tggagccata aacagacaca ataactaagg tgtcgagtct tacaaagaca ccataggaag
     2101 gattatctgt cacgattatc tccccattgg ggtctggatt agtcgcatta taatacctgc
     2161 ttttgttgaa aattgtatcc cttagttcta attcactgat caattctaat ttttcgtctt
     2221 cggaaatctg ggccacattg tatccgccat ttttccagaa tagaattttg ccattatcat
     2281 ataaaataaa gggcgggcct tccgctccca taaataaagc ccatgggtgg ctgacgcggt
     2341 accaaaaaat aggtttacca aaacttgtgt ctgtagtttg acctaaagat ctgtacccaa
     2401 ttaataacag ggcaataaat agaaggcgtt gtatcacttt attatttaat gggttggtaa
     2461 tcaagattca ggtttgaaaa tattaaatgt cacttgtgta gtcatgcctt aatttttctt
     2521 tgcttacaac tggattgcca gagggcgatc ctcgacggag gacttaccca aagccttcgc
     2581 tacgcttcgc gtagctgtgc tttgtttttt ctgcgcttac aaaagctgac gcttttgacg
     2641 ctccgaaaaa acaaagcctc actgctttcg cagtgaggct ttgtgcccaa gactggattc
     2701 gaaccagcac gccctttcgg gcaccaccac ctcaaagtgg cttgtctacc aatttcaaca
     2761 cctgggctgt ttggggctgc aaatatcatt atcccaccca tatcttccaa acacaaaatt
     2821 tgtaaaaaag cggaggcatg aacccacgtc aaaggctcag cggcagtacc atcctgaagg
     2881 tggttccttt tcccggttcg gaatgatgca caaataactg gccattgtgg tattgctcca
     2941 caatgcgctt actgagggtg aggcccaggc cccaacctct tttcttggtg gtgaatcccg
     3001 gctggaaaac acgctgccaa tcggaatagc tgatgccttt cccggtatct gaaacatcca
     3061 gttgtaaggc tttgggattt ttttccagca ctactgtaat agagccggaa ccttccatgg
     3121 catccagcgc attcttgagc aggttttcca atacccagtt gatgagcgtg ggcgaaatat
     3181 tagccattgc ttcctgctgc ggcaccttca ctgtaaactg tactttgcct ggcgcccttc
     3241 gcttcatgta atccaccatc tccgtaacca acggcgtgaa attcatgggt tccagttgcg
     3301 gttgggatcc tattttcccg aaacggtcac tcaccagttt caaccgctcc acatcctttt
     3361 ccagttccag caccaggtca ttgccgggct cctgctcttt cagcatttcc acccaaccgc
     3421 gaaggctggt gatgggagtg cccagctggt gggccgtttc cttggcgagg cccgcccaca
     3481 cctggttttg ggtgctccgg ttgcgggtgg tgatcagcgc aatgagcagg gcaataaaaa
     3541 cgctgagtat cacgagttgt atgaacgggt aatactgcac ctctttgagc aggcgggtat
     3601 tcccgtaata gactttgtat accaatttgg gactatcgcc aatgagccag tcaatgggtg
     3661 gattttcctc ctttaatgcc ttgagttttt tgtcaaggta ggtgctgtcg gaggcaatgg
     3721 aagcactgtc caggttgcga tgatccacca ctttaccatt ctggtcagcg gcaatcagtg
     3781 gcatgtcttc attgttgatg atgaccatat tggccagcga caaggcggta ggatcgctgc
     3841 tggattgcat ggcctggttg gcatgcaccc attcttccac ccgctggcgc tcttcccgct
     3901 caatttttcg ggccacgtac cgggtgtaca gccctgttcc caatactata agtacagcca
     3961 gcacataaaa gaaagtgcgc caattgaaaa gcctgccgaa catgcaccta agatagtccc
     4021 aaaaggacag tgccattcat ggtttcaaaa aaagctgtgt acaagtggat ttcgcgtcag
     4081 caattttgcc atcaccccct tatttttgca gccacaataa aaaagtatgg cgcacaatca
     4141 acagcatcac ggccccgatg aaagagagtt tggtaccaac tgggtcacct catccaaata
     4201 ccttttttac ctgcaggttt tcactctgtt ggcttttgtt ttcggttgca gctataattt
     4261 gtacaaggct acccgcttcg aagcaaagcc caaagtagaa gtgcaggaaa gcagccagta
     4321 cacgcccaaa tacaagtcgt aaaaaatatt tggcagaaat agtcagaccc ctatttttgc
     4381 actcccaaaa tcaaacggga cagttcttat aagcgttgcg aaagcaacca aatgcggaag
     4441 tagctcagct ggtagagcat caccttgcca aggtgagggt cgcgggttcg aatctcgtct
     4501 tccgctcttt tttttcacct cgcagcgatg cggggtgttt tttttggtgt agcattgtac
     4561 cgcgttgccc tggtggtgga actggtagac acgcaggact taaaatcctg ttcgccgaaa
     4621 agcgagtacg ggttcgattc ccgtctgggg cacaaaacag agtcagcttt cgctggcttt
     4681 ttttattttg accggatatg aagtattaca cttacatact ttatgcggcc caattcgata
     4741 gatactatat aggccaaacc gatgacatgc aagatcggct aagaaggcac aattcgggtt
     4801 acgaaaaagc tactgccccg tatatccctt ggacccttga actttttatt gagaagcctt
     4861 caagagcgga agcaatgaag cttgaggtca aacttaaaaa cctcaaccat aagaggttaa
     4921 tgagctttat tgaaaaatat aagcctcgat agcgagtacg ggccgagacg atccgcctaa
     4981 gcggatgtct cggtgcagac aaccgctcag cggttcgtct gcattcgatt cccgtctggg
     5041 gcacaaaaca gagtcagctt tcgctggctt tttttattcc acactttaa
//
LOCUS       DATIQF010000865         6214 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_74461, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000865 DATIQF010000000
VERSION     DATIQF010000865.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6214
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74461"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1565)
                     /gene="pgi"
                     /locus_tag="VLL95_14860"
     CDS             complement(<1..1565)
                     /gene="pgi"
                     /locus_tag="VLL95_14860"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF001211.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004347 - glucose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HSR40187.1"
                     /translation="MFPSIQPTHTNAWNLLNTHAAALKGVHMRQLFQQDPDRFKKFSL
                     CAPDLAFDYSKNIVTAETMALLLQLAQECGLKDAIEAMFNCEKINATEGRSVLHVALR
                     ASENEEYIVDGQNVVPEVQKVLKQMESFCAKIHSGEWKGYTGKPIKYIVNIGIGGSDL
                     GPVMVTEALRPYWKEGIQTYFVSNIDGTHIAETLRKVTPDETLFLVASKTFTTQETMT
                     NAHTAREWFLQHAGNEAHVALHFAALSTNEKEVTKFGIDTANMFAFWDWVGGRYSLWS
                     AIGLSIALTIGFDNFKQLLNGAHTIDQHFRSTAFDQNIPVIMALIGIWYTNFIGASSE
                     AILPYDQYLHRFAAYFQQGNMESNGKTVDRNGQRVQYATGPVIWGEPGTNGQHAFYQL
                     IHQGTLLIPCDFIAPAISHNPVGDHHQKLLSNFFAQTEALMNGKTVAECEAEGVPAAL
                     IPYKVFEGNKPTNSILVKEITPFTLGEMIALYEHKIFVQGVIWNIYSFDQWGVELGKQ
                     LANKILPELKSED"
     gene            complement(1696..2715)
                     /locus_tag="VLL95_14865"
     CDS             complement(1696..2715)
                     /locus_tag="VLL95_14865"
                     /inference="COORDINATES: protein motif:HMM:NF041359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntG family PLP-dependent aldolase"
                     /protein_id="HSR40188.1"
                     /translation="MSIELRSDTFTQPTAGMLSAMFEAKTGDDVFGEDPTVNELEART
                     ATLFGMEAGLFCPSGTMTNQIAIKVHTQPGDEVICDELSHVYQYEGGGIAFNAGCSVR
                     LLHGDRGRITARQVEEAINPDDVHKAHSRLVVLENTANRGGGACYDFEEILGIKELAR
                     QHQLGFHLDGARLWNAMVARKETPQQYGAAFDSISVCFSKGMGTPVGSVLLGTAEFIQ
                     KARRVRKVFGGGMRQAGYLAAAGIYALEHHLPLLSMDHDHAKKTAAVLAQKNWVEEIF
                     PVETNILIFRTRQDTPAKTIVDKLAKEGVKCLTINAHAIRMVFHLGVSQHDTERLLGI
                     LDAMD"
     gene            3145..3792
                     /locus_tag="VLL95_14870"
     CDS             3145..3792
                     /locus_tag="VLL95_14870"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD/SigA"
                     /protein_id="HSR40189.1"
                     /translation="MRQLKIATQITNRDSQAVEKYLQEISKIGMITPEEETILAQRIK
                     MGDQKALERLTTANLRFVVSVAKQYQHQGLSLSDLINEGNLGLIKAAQRFDETKGFKF
                     ISYAVWWIRQSILQALAEQGRLVRLPQNKIGTYNKANKAYMAFEQEHEREPSTEELAD
                     ILEMSETEINNIFQSNTRHSSLDAPVHEAEDVAMGDLLEGSDDTDDDVMKDSLRE"
     gene            3805..4002
                     /locus_tag="VLL95_14875"
     CDS             3805..4002
                     /locus_tag="VLL95_14875"
                     /inference="COORDINATES: protein motif:HMM:NF016432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="HSR40190.1"
                     /translation="MKSLSPREAEIVSAYFGLDGENGVTIEQIGQKYDLTKERIRQIK
                     ERAIKRLQKARYSNSLKAYLG"
     gene            complement(4159..4521)
                     /locus_tag="VLL95_14880"
     CDS             complement(4159..4521)
                     /locus_tag="VLL95_14880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40191.1"
                     /translation="MHPDLLKILSHSDQPIDNEKLVAYLTGQLSPAESQQVEEQLAAS
                     GIDEEALDGLMMLNKHKVSAYQQELDLFLKKQIKTEKRKKHKPLGISWGWLAAATGAI
                     IVLAILLWYIVHFLSAKS"
     gene            complement(4511..5110)
                     /locus_tag="VLL95_14885"
     CDS             complement(4511..5110)
                     /locus_tag="VLL95_14885"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSR40192.1"
                     /translation="MKKELPVQDKNQHLTDQQLLHLYRDSNNNHYLGILLQRYTLLLL
                     GVCMKYLKDEEEAKDAVQQVFIKALNEAGKYEITYFKSWIYTVARNYCLMELRKNHYT
                     VSEDSLPGGLPDGSPDPLEERYMQEKKEQLLQLVEQGLEQLQDPQKICVRLFYLEKNS
                     YQQIAERTGQSLMQVKSAIQNGKRNIKIWVEKQRHFHAS"
     gene            5212..6003
                     /locus_tag="VLL95_14890"
     CDS             5212..6003
                     /locus_tag="VLL95_14890"
                     /inference="COORDINATES: protein motif:HMM:NF013073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HSR40193.1"
                     /translation="MTFLTLVAVAPMRSEASHRSEMVSQLLFGELCDWMDSSGDFVRV
                     KNRYDGYEGWVQRSQLAQIEPHVRDQSITNTQMLTEGAEVDGSPVPLSPCCEFYCPAN
                     VGGEINYKDVQAEGHSIKYLLPLDGPNAPNVASNVHALIMQYAHWYLGTPYLWGGKSI
                     WGIDCSGFVQMVYKMADLFVPRDAWQQAEGGDVVGFLQEAVPGDLAFFDNAEGRITHV
                     GILLNEKEIIHASGVVRVDPIDNHGIMNKQSGKRTHNLRIIKRFF"
BASE COUNT         1478 a         1504 c         1576 g         1656 t
ORIGIN      
        1 aaatcctcgc ttttcaattc gggtaatatt ttgttggcca gttgcttgcc cagttccacg
       61 ccccactgat caaagctgta aatgttccag ataacgcctt gcacaaaaat cttgtgttcg
      121 tacagggcga tcatttcacc cagcgtgaac ggcgtgattt cttttaccag gatgctgttg
      181 gtgggtttgt tgccttcaaa cactttgtac ggtatcaacg cggcaggcac accttcagcc
      241 tcacattctg ctacggtctt gccattcatc aaggcttctg tttgggcaaa aaagttgctc
      301 agcagtttct ggtgatgatc acccaccggg ttgtggctga tagcaggagc tatgaaatcg
      361 caggggatga gtaaagtgcc ctggtgtatg agttggtaga atgcatgttg cccgttggtg
      421 ccgggttctc cccaaattac cggaccggta gcatactgca cacgttgtcc gttgcgatca
      481 acggttttgc cattgctctc catattgccc tgctggaaat aagcggcaaa acggtgcagg
      541 tattggtcgt atgggagaat ggcttcactg ctggctccaa tgaagttggt gtaccaaata
      601 ccaatgagcg ccatgatcac cggaatgttc tggtcaaacg ctgtcgatct gaaatgctga
      661 tcaatggtat gggcgccgtt cagcagttgt ttgaaattgt cgaagccaat ggtcaatgca
      721 atactgagac cgatggcgct ccacaaactg tagcgaccgc ctacccaatc ccagaaggca
      781 aacatgttgg cggtgtcgat gccaaatttg gttacttctt tttcgttggt gctgagggcg
      841 gcaaaatgaa gtgccacgtg ggcttcgttg ccggcatgct gtaaaaacca ctcacgggcc
      901 gtatgcgcat tcgtcatggt ttcctgggtg gtaaaggttt tgctggcaac caggaacagc
      961 gtttcatcgg gtgtcacttt ccggagtgtt tcggcaatgt gtgtgccatc gatgttgctc
     1021 acaaaataag tctggatacc ttctttccag taaggacgca aggcttctgt taccatcacc
     1081 gggccgaggt cgctgccgcc aatgccaatg ttcactatgt atttgatggg cttcccggtg
     1141 tagcctttcc attcgcctga atggattttg gcacagaatg attccatctg cttcagcact
     1201 ttctgcacct ctggcaccac gttctgtcca tcaacaatgt attcttcatt ttcgctggcc
     1261 cgcaaggcta cgtgcagcac actgcggcct tcggtggcgt ttattttttc gcagttgaac
     1321 atggcttcga tggcgtcctt caatccgcat tcctgggcca gttgcagcag caatgccatt
     1381 gtttcggcag tcacaatgtt cttcgaataa tcaaaggcga ggtcgggagc acagagtgag
     1441 aattttttga atcggtccgg gtcttgctgg aaaagttgac gcatgtgtac gcctttcaaa
     1501 gcggcagcat gtgtgttcag caggttccag gcattggtat gggttggttg tatagaagga
     1561 aacatgataa ggttcgtttt atgaaggcgg caagttaggc acaaaacaaa aagtgctccg
     1621 cctgaatgga gcacttttct aaatgatttt gatcagttct tttaatgaac gctcactctt
     1681 accctgatct atgtgtcaat ccatagcgtc gagaatacca agaagacgct ctgtgtcgtg
     1741 ctggctgacc cccaaatgaa ataccatcct gatggcatgc gcattaatgg tgaggcactt
     1801 taccccttcc ttggccagtt tgtctacgat ggttttggcc ggcgtgtcct gccgggtcct
     1861 gaagatcagg atgttggttt ctaccggaaa tatttcttct acccaatttt tttgggccaa
     1921 tacagccgcg gtttttttcg catggtcatg atccattgaa agcaatggca ggtggtgttc
     1981 cagggcataa atgcctgccg ctgccaggta gccggcctgt cgcatgccgc caccaaacac
     2041 tttccgcacc cttcttgctt tttggataaa ctccgcggtg cccagcaata cgctgcctac
     2101 gggcgttccc attcccttgc tgaagcatac tgatatggaa tcaaatgcag cgccgtattg
     2161 ctgtggtgtt tctttcctgg ccaccatggc attccaaagc cgggcgccat caaggtgaaa
     2221 tccgagctgg tgctgccggg caagctcttt gatccccaga atttcttcga aatcgtaaca
     2281 tgccccgccg ccccggttgg cggtgttttc cagcaccacc aggcgggaat gggctttgtg
     2341 cacatcgtcg gggttgatgg cttcctcaac ctgtcgggcg gtgatccgcc ccctgtcgcc
     2401 gtgtaacagt ctgaccgagc acccggcgtt gaaggcgatg ccgccacctt catattggta
     2461 tacatggctg agttcgtcac aaatcacctc gtcgccgggc tgggtatgca ctttaatggc
     2521 aatctggttg gtcatggttc cgctggggca aaacaggccg gcttccatgc caaacagggt
     2581 tgcagtccgg gcttccaact cgttaactgt ggggtcttca ccaaaaacat catcacccgt
     2641 tttggcttca aacatggcac taagcatgcc ggcggtgggt tgcgtaaacg tgtccgatct
     2701 cagttcaata ctcattactt atcgttaagg aattcaaaaa taggagccac taatgttggt
     2761 caaatgtatc ggatgatcga catgaaccaa tcatccgggt gactttgcgt gtgagagctg
     2821 tatcataccc tgaaagaaca gaacaaggtg ttttcggcct gtcgcaatag tttgcagtaa
     2881 tgcgctgaaa catatttcac aaaaaaaaca cggctgcttg tggtcagttt gcgccaatta
     2941 atagtctaat aggaaataaa caatgaaagt tttgggttgt tattttgttt tagggctatg
     3001 aaaagcggat gatgacagtt acctttgcag cccttttgct agggggttat tcacattgtg
     3061 aaaatcctgt agtaattcaa gaaccaggaa agtaagacac agccttatct ttcgaagcag
     3121 tagaaaaagg agaacaagca tactatgagg caattaaaaa ttgctaccca gatcactaac
     3181 cgtgactcac aggcggtaga aaagtacttg caggaaattt ccaagattgg catgatcact
     3241 cccgaagagg aaaccatttt ggcccagcgc attaaaatgg gtgatcagaa agcattggag
     3301 cgcctgacaa cagccaacct ccgtttcgtg gtttcggtag cgaagcagta ccagcaccag
     3361 ggactgtctt tgagtgacct gatcaatgag ggcaacctcg ggctgatcaa agcagcccag
     3421 cgtttcgatg aaaccaaggg tttcaaattc atttcttacg ccgtttggtg gattcgccag
     3481 tccatcctgc aggcgttggc agagcagggt agattagtcc gcctgcctca aaacaaaatt
     3541 ggcacctaca acaaagccaa caaggcttac atggctttcg aacaggaaca tgaacgcgaa
     3601 ccttctaccg aagaactcgc cgacatcctg gagatgagcg aaaccgaaat caacaacatt
     3661 ttccagagca acacccgcca cagcagcctc gatgcccccg tgcacgaagc cgaagatgtg
     3721 gccatgggcg acctgctgga aggtagcgat gacacggatg atgatgtaat gaaagactcg
     3781 ctgcgtgaat agatccgccg cgttttgaaa tcactcagcc cccgtgaagc tgaaatcgtt
     3841 tcggcttatt ttggtcttga tggcgaaaat ggtgtaacca ttgagcaaat cggacagaag
     3901 tacgatttga ccaaggaacg tattcgccaa atcaaggaac gagccatcaa gcgtttgcaa
     3961 aaggctcgtt acagcaattc cctgaaagcc tatttgggat aattgcgcac caggcacatt
     4021 tatcccgaaa tatcctcgag gatcgaagat ttgggataat atgtacgggt tctgcaccta
     4081 agcagaaaac gacattggcc cctcggcagt tttgctgagg ggtttctttt ttaatcaagt
     4141 cttgttacgg ttactgcgtc aggatttggc ggacaggaaa tgcactatat accacagcag
     4201 gatagccagc acaataatgg cgccggtggc tgccgccagc caaccccagg aaatacccag
     4261 tggtttgtgc ttcttccgct tctctgtctt gatctgcttt ttcaggaaca ggtcgagctc
     4321 ctgctggtag gcagatactt tgtgcttatt cagcatcatc agcccgtcaa gggcttcttc
     4381 atcaatgccc gatgccgcca gttgttcttc cacctgctgg ctttcggcag ggctcagttg
     4441 cccggtcaaa taggcgacca gcttttcgtt gtcgatgggc tgatccgaat gggacaatat
     4501 tttaagcaaa tcaggatgca tgaaaatgtc tttgtttttc tacccagatc ttgatatttc
     4561 tttttccgtt ttgaatggcg ctttttacct gcatcagcga ttggccggtg cgttcggcaa
     4621 tttgctggta gctgttcttt tcaaggtaaa agagtcgcac acatattttt tgcgggtctt
     4681 gcaattgttc caggccttgc tccaccagtt gcagcaattg ttctttcttc tcctgcatgt
     4741 aacgctcttc caatgggtcg gggctgccat caggcaatcc gccgggcagg gaatcttctg
     4801 aaacggtgta atggtttttc cgcaactcca tgaggcagta attgcgggct accgtgtaga
     4861 tccaactctt gaagtaggtg atctcatact tgccggcttc attcagcgcc tttatgaata
     4921 cctgttgtac cgcgtctttt gcttcttctt catccttcag gtatttcata caaacaccca
     4981 gtagcagcag ggtataacgt tgcagcaaaa taccgagata atgattgtta ttggaatcac
     5041 ggtacaaatg cagcaattgt tggtctgtga ggtgttggtt tttgtcctgc acgggcaact
     5101 cttttttcac tgatgtaagt aaatgaaaaa atccacaaaa tgcttccaaa gttttttgac
     5161 cgcgccggca ttgccgctaa aagtgtagca ttgtgaaaat gtgaggcagc tatgaccttt
     5221 cttacactgg tggcagtggc tcccatgcga tccgaagcca gccatcgttc agaaatggtg
     5281 tcgcagttat tgtttggcga actctgtgat tggatggatt cgtcgggcga ctttgtgcgg
     5341 gtaaaaaacc gctacgacgg ttatgaggga tgggtgcagc gaagccagct ggcgcagatt
     5401 gaaccccatg tacgcgacca atccattacc aacacccaaa tgctgacaga aggcgctgaa
     5461 gtagacggca gcccggtgcc actttcaccc tgctgcgaat tttactgccc ggccaatgta
     5521 ggaggcgaga tcaactacaa ggatgtacag gccgaagggc acagtatcaa ataccttctt
     5581 ccgctggatg gtccgaacgc acccaatgtg gcttccaatg ttcatgccct cattatgcag
     5641 tatgcacatt ggtacctggg aactccctac ctgtggggcg gaaagagcat ttgggggata
     5701 gactgcagcg gttttgtgca gatggtatat aagatggctg acctgtttgt gccccgcgac
     5761 gcctggcagc aggcggaggg aggcgatgtg gtgggctttt tgcaggaagc agttcccggc
     5821 gacctggcct tcttcgacaa cgcggagggc cgcattaccc atgtgggcat cctgctgaat
     5881 gaaaaggaga tcattcatgc ttcgggtgtg gtgcgggtag atcctatcga taaccacggc
     5941 atcatgaaca aacaaagcgg caagcgaacg cataacctgc gcatcatcaa gcggtttttc
     6001 tgaaacaggc tgatggatga gattgggtgt tgcccaaaac aaaacccggg acgatacgtg
     6061 taagcatcgt ccccggtaac ttttttatat cagttcttac ccgaattttt cctggtaatg
     6121 cgcaatgccg gcactgataa tttgcagggc tgttgctttg tcgccaaagt cttccacctg
     6181 cactgttttg ttttccagtt ttttatagtc ctcg
//
LOCUS       DATIQF010000866         1692 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_302731,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000866 DATIQF010000000
VERSION     DATIQF010000866.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1692
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302731"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..813
                     /locus_tag="VLL95_14895"
     CDS             <1..813
                     /locus_tag="VLL95_14895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40194.1"
                     /translation="IQPLENVQRATDEARRIGFESVNFDLIYGLPRQSLRGLEKTVQD
                     VITLLPDRIAFYSYAHVPWTSRGQRLFDERDLPSPEEKIKLYLKGRELLTAADYADIG
                     MDHYALPNDSLYQAWRSGTLHRNFMGYTTQHTSLLVGLGVSSISDAGFAFAQNHKTLS
                     EYYQAIEAGELAVCKGYTLSREDELFRRYILDVCCRGQLEFDPSSKEVLEEYCFPELE
                     KLEADGLVNCNAQGLQVTATGRNFIRNIARCFDLHLLRDTVAEKGVKFSKAV"
     gene            complement(819..1349)
                     /locus_tag="VLL95_14900"
     CDS             complement(819..1349)
                     /locus_tag="VLL95_14900"
                     /inference="COORDINATES: protein motif:HMM:NF015608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HSR40195.1"
                     /translation="MYFYIKAIHIIFVVTWFAGLFYLPRLLVYLAEAQQKQEPEKSIV
                     TAQLLIMTKRLWYGITWPSAILTLIFGVWMWWLYPGTPSWLWIKLAFVLLLYLYQFSL
                     QYIVGKNAKGLFPYTGNQMRIWNEVPTVLLVAVVMLVVVKENISLVWGLAGLTALIIL
                     LMSAIRIYKAIRKKQA"
     gene            complement(1506..>1692)
                     /locus_tag="VLL95_14905"
     CDS             complement(1506..>1692)
                     /locus_tag="VLL95_14905"
                     /inference="COORDINATES: protein motif:HMM:NF012964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HSR40196.1"
                     /translation="KKLLVACPAFVSDCLETLEEIAEEGKEEFMHAGGESFTMIPCLN
                     VHPKWVEAIVHLVDEAV"
BASE COUNT          462 a          382 c          419 g          429 t
ORIGIN      
        1 atacagcctt tggaaaatgt gcagcgagcc acagacgaag cccgccgcat tgggtttgaa
       61 tcggtgaatt tcgatttgat ctatggcttg ccgaggcaaa gcctgcgagg attggaaaag
      121 acggtgcagg atgtgatcac actgctgccg gatcgcatcg cgttttacag ttatgcgcat
      181 gtaccctgga ccagccgtgg tcagcgcttg tttgatgagc gggatctgcc atcgccggag
      241 gagaagataa agctgtattt gaaaggtcgt gaattgctga cggcagcgga ttatgccgac
      301 atcggcatgg atcattatgc gttgccaaac gatagtttat accaagcttg gcgatccggc
      361 actttgcatc ggaatttcat gggatatacc acccagcata cctcactcct cgttgggttg
      421 ggcgtaagca gcatcagtga tgcgggattt gcctttgctc aaaatcataa aacattaagc
      481 gagtactacc aggctattga agccggtgaa ttggcggttt gcaaaggata taccttgagc
      541 cgggaagatg agttgttcag gaggtatatc ctcgatgtgt gttgccgggg ccagctggaa
      601 ttcgatccga gtagtaagga agtgctggaa gaatactgct ttcctgaatt ggagaaactg
      661 gaggcggatg ggttggtaaa ctgcaatgcg caaggtttgc aggttactgc taccgggcga
      721 aacttcattc gcaatattgc ccgctgtttt gatctgcact tattgagaga tactgttgcg
      781 gaaaaagggg tgaagttcag caaggccgtt tgattcggtc acgcctgctt tttcctgatg
      841 gctttgtaaa tgcggatggc gctcatgagc aggatgatca aagcggtaag tcctgccagg
      901 ccccacacca ggctgatgtt ttcttttacc accaccagca ttaccactgc taccagcaat
      961 acagtgggta cttcattcca tatgcgcatt tggttgcccg tgtaagggaa aagccctttc
     1021 gcatttttgc ctacaatgta ttgcaatgaa aactggtaca ggtacaacag caatacaaac
     1081 gctagtttga tccacaacca ggatggtgtg ccgggataca accaccacat ccaaacgcca
     1141 aaaatgagcg tgaggatagc tgatggccag gtgatgccat accacaagcg tttggtcatg
     1201 atcagcaact gtgccgttac tatcgacttt tcaggctcct gcttttgttg cgcttctgca
     1261 aggtaaacca gcaaccgggg caggtagaac aaacccgcaa accaggtaac tacaaaaatg
     1321 atatggatgg ctttgatgta aaagtacatg agaaaaaaag ttcacagttc cagtgttcca
     1381 aagttcacga gtttacaaac cggcctcaaa atgaacaatt agctttcaaa aatggaaatt
     1441 tggagcgggc atttgaagta atttctggca ataaaccaaa aacaacaaac caaaaacatc
     1501 aaacattaaa ctgcttcatc tactaaatgt acaatggctt ccacccattt cggatgcaca
     1561 ttcaaacagg ggatcatcgt aaagctttca cctccggcat gcatgaattc ttccttacct
     1621 tcttctgcta tttcttccag tgtttccaga cagtcgctca caaaagccgg gcaggccacc
     1681 agtagttttt tg
//
LOCUS       DATIQF010000867         6624 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_241923,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000867 DATIQF010000000
VERSION     DATIQF010000867.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6624
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241923"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1032
                     /locus_tag="VLL95_14910"
     CDS             <1..1032
                     /locus_tag="VLL95_14910"
                     /inference="COORDINATES: protein motif:HMM:NF017050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC oxidoreductase"
                     /protein_id="HSR40197.1"
                     /translation="GRGQCQNRNLCMRGCPFGGYFSSVTCTLPWAQQTNNLTIRPHSV
                     VHSIIYDEQKQQATGVRVVDANTKAVTEFFARIIFVNASALNTNLILLNTVSNRFPNG
                     LGNDNGLLGKYICFHNYRGSMGATFEGFEDKYYKARKPAECVIPNFRNLKQLDTDFVG
                     GYVIFSGGYRSRMDYEAPDGIGAAFKDSLCEPGPWGAYMYMQGETIPKISNHVRLSKE
                     QKDAYDMPLLITVVGYDENDEKMVKDFLEQGKAMLEAAGAIEVHTHDSQQAPGLDIHE
                     MGGVRMGKDASTSLLNKWNQLHHCPNVFVTDGACMTSTGNQSPSILYMALTARAAHYA
                     VAELKKQNL"
     gene            1037..1429
                     /locus_tag="VLL95_14915"
     CDS             1037..1429
                     /locus_tag="VLL95_14915"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HSR40198.1"
                     /translation="MNQLFSGKPWPHENVLAALRIIIGLFLVVHGIEVLQPARMEEYV
                     KWEAFAGKSWLPYLGKGAELVAGILLVLGWLTRVAAVLTIGTFLYITFGVGHGKFWME
                     DQHPFLFALFGLLFLFTGPVKWCLDKES"
     gene            1499..3280
                     /locus_tag="VLL95_14920"
     CDS             1499..3280
                     /locus_tag="VLL95_14920"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HSR40199.1"
                     /translation="MRHYYKQLIGATVAIFLLTTICGHAQPKTYCNPINIDYGYTPIP
                     NFSEWGRHRATADPVIVTYKDEYYLFSTNQWGYWHSADMLNWTFHSRRFLRPWNAGYD
                     ELCAPAVGIIGDTMIVFGSTYTRNFTIWMSTNPKANEWKPLVDSFDIGGWDPSFFTDD
                     DGKLYMYNGSSNKFPMYGVELDRKTMQPQGTRKEMYLLEPWRYGWQRFGEHMDNTFLD
                     PFIEGSHMTKYKNKYYLQYGAPGTEFSGYADGLLVGEQPLGPFQAQPDPLSLKLGGFV
                     RGAGHGATFQDKFGQYWHVSTTVLSVKNTFERRLGIWPAGFDADDVMYCNTTFGDYPH
                     YIPDAGIRNDGYGKDGKSPYFTGWMLLNYNKPVMVSSTLGGQVPNHAVDELIKTYWSA
                     ETGNAGEFIQSDLGRVSTVRAIQINYADQDVAQDRLGKIPSQYHQYKVYSSLDGKKWT
                     LLLDKSKNTTDVPHDYVELPQAAQARYIKLENVHMPTGKFAISGLRVFGNGNGEKPSA
                     VKGFIVLRTEKDKRSAFIKWQPVDNAFAYNIYYGTHPDKLYNCIMVHANNEYWMKAMD
                     ALSTYYYSIEAVNENGTSERTKPVKTE"
     gene            3286..3945
                     /locus_tag="VLL95_14925"
     CDS             3286..3945
                     /locus_tag="VLL95_14925"
                     /inference="COORDINATES: protein motif:HMM:NF024863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HSR40200.1"
                     /translation="MRIILGWILVFKWGVLLAQDTTLPYYKEIRAFRVQDSLQFPAAH
                     QILFIGSSSFTRWTDVQQYFPGYKILNRAFGGSSLLDVIRYRYEVIYAYQPKQIVMYC
                     GENDFASSDTVTVTMLVQRFKTLFQLIRAKYPDVPFVYVSMNPSPSRRNLFAKYIEAN
                     RQIRQYLSAHKQTRFVDVYNAMVQANGEPNGSIFSDDSLHMNSQGYRIWQKKLQPVLI
                     K"
     gene            3962..6250
                     /gene="bglX"
                     /locus_tag="VLL95_14930"
     CDS             3962..6250
                     /gene="bglX"
                     /locus_tag="VLL95_14930"
                     /EC_number="3.2.1.21"
                     /inference="COORDINATES: protein motif:HMM:NF011678.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucosidase BglX"
                     /protein_id="HSR40201.1"
                     /translation="MKRMKQWLLMICLMASLPSMAQTNSDPKMKAFIDNLMKQMTLEE
                     KLGQLNLPGAGDIVTGQAGNADIARKIREGKVGGLFNIKGVEKIREVQKLAVEQSRLK
                     IPLLFAMDVIHGYQTVFPIPLGLSASWDMKAVERSAQIAAKEASADGINWTFSPMVDI
                     ARDPRWGRMAEGGGEDPYLGGEIAKAMVRGYQGKDLKANNTIMSCVKHFALYGAAEAG
                     RDYNTTDMSHQRMYNEYFLPYKAAVDAGAGSVMASFNEIDGVPATANKWLMTDVLRKQ
                     WGFGGFVVSDYTGVGEMTSHGIGDTAAVAARALMAGLDMDMVSEALLTTVPKSLKEGK
                     VTMAQIDAACRRILEAKYKLGLFEDPYRYCDISRPAKEVYTAENRKEARTIAAQSFVL
                     MKNDGNILPLKRGSKIALVGPLADNRENMPGTWSVAANFSKAISVLEGMKEVGGAGTQ
                     IVYAKGSNLDYDASFEERAGMFGKNLGRDNRPAEQIIAEAVAAAKDADVIVAAVGESA
                     EMSGECSSMTDIELRQSQKDLLKALKATGKPLVIVLFAGRSMAIAEEAKEYPCILNVW
                     FPGSEAGYAIADALFGDVNPSGKLSATWPQNVGQIPLFYNHKNTGRPLGEGKWFEKFK
                     TNYLDVSNDPLFPFGYGLSYTSFTYSDVKLSATSLKGNQTLTATVSVTNSGKVAGKEV
                     VQLYLRDVVGSVTRPVKELKGFEKIELQPGETKTVTFRITPELLKFYNYDLKFDWEAG
                     EFDIMIGGNSRDVKTKRVNWQK"
     gene            6328..>6624
                     /locus_tag="VLL95_14935"
     CDS             6328..>6624
                     /locus_tag="VLL95_14935"
                     /inference="COORDINATES: protein motif:HMM:NF015000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase family
                     protein"
                     /protein_id="HSR40202.1"
                     /translation="MSFANNQVVAHRGAFKANRFPENSIASLREAIRLGCTGSEFDVR
                     MTADDSLIINHDEHYHDLEIEQTSFAQLSQFKLSNGEALPTLRQYLLAGMTNNQH"
BASE COUNT         1784 a         1539 c         1765 g         1536 t
ORIGIN      
        1 ggaagaggtc agtgccaaaa ccgaaacctg tgcatgcggg gctgtccttt cggcggatac
       61 ttcagcagtg ttacctgcac attgccctgg gcacagcaaa caaataacct taccattcgt
      121 ccgcacagcg tggtgcattc catcatttat gatgaacaaa agcagcaggc aaccggtgta
      181 cgcgtagtgg atgccaatac caaagcagta acagagtttt ttgcccgcat catttttgtg
      241 aatgcttcgg cactgaacac caacctcatc ctgctcaata ctgtgtccaa tcgattcccc
      301 aatggattgg gcaacgacaa tggtttgttg ggcaagtaca tctgctttca caattatcgc
      361 ggcagcatgg gcgccacatt cgaaggattt gaagacaagt attacaaagc ccgaaagccg
      421 gcagagtgtg tgatccccaa cttcaggaac ctgaagcaat tggatactga ctttgtgggc
      481 ggatacgtca tcttcagcgg cggctatcgg tcacgcatgg attatgaggc gccggatggc
      541 attggtgcgg cattcaaaga ctctttgtgc gaacccggcc catggggcgc ttacatgtac
      601 atgcagggcg aaacgattcc caaaatcagc aatcatgtgc gactgagtaa ggagcagaaa
      661 gatgcttacg atatgccttt gctcatcacg gttgtagggt atgatgagaa tgatgaaaag
      721 atggtgaagg attttttgga acaaggcaaa gccatgctgg aggcggccgg cgccatagag
      781 gtgcacaccc acgacagcca gcaggcgccg ggtcttgaca tccatgaaat gggcggggtg
      841 cgcatgggaa aagatgcttc cacttccttg ctgaacaaat ggaaccagct ccaccattgc
      901 cccaatgttt ttgtaaccga tggagcctgc atgaccagta ccggcaatca aagccccagc
      961 atattgtaca tggcacttac agcaagggcc gcccattacg cagtggctga actcaaaaag
     1021 caaaacttat aagcgtatga accaactatt ctccggcaaa ccatggccac acgaaaatgt
     1081 gcttgcggcg ttgcgcatca tcatcggctt gttcctggtg gtgcatggga tagaagtact
     1141 gcagccagcc cgaatggaag agtatgtgaa atgggaagca tttgccggaa aatcatggct
     1201 gccatacctg ggcaagggag ctgaattggt ggctggtatt ttgttggtgc tgggttggtt
     1261 gacacgggtg gcggctgtcc tcacaatcgg cacgtttttg tatatcactt ttggggtcgg
     1321 ccacggaaaa ttctggatgg aagaccagca tccattctta ttcgctttgt ttggattgtt
     1381 gtttttattt accgggccgg tgaagtggtg tttggataaa gagtcgtaat tattagccac
     1441 agattcacag atttaattga taagacttat ggaatccttc caatcaaatc gttcaaaaat
     1501 gcgtcactat tataaacaac tcataggtgc aactgtggcc atattcctgc taactaccat
     1561 ctgcggccat gcacagccaa aaacctactg caatcccatt aacatagact atggctatac
     1621 ccccattccc aacttcagcg aatggggccg gcacagggcc actgccgacc cggtgattgt
     1681 gacgtacaaa gacgaatact atctcttcag caccaatcaa tggggctatt ggcatagtgc
     1741 ggatatgttg aactggactt ttcacagccg gcgtttcctg cggccgtgga atgctggtta
     1801 tgatgaactg tgcgcaccgg cggtgggcat tattggcgat accatgatcg tgtttggcag
     1861 tacctatacc cgcaatttca cgatctggat gagcactaat cccaaagcca acgaatggaa
     1921 gccattggtg gattcatttg acattggtgg ttgggatcca tctttcttta ccgacgatga
     1981 tggcaagttg tacatgtaca atggcagcag caacaagttc ccgatgtatg gcgtggaact
     2041 ggaccgtaag acgatgcagc cgcaaggcac ccgcaaagaa atgtacctgc tggaaccctg
     2101 gcgatacggc tggcagcgat ttggggagca catggacaac accttcctgg atcccttcat
     2161 tgaaggcagc cacatgacga aatacaagaa caaatactat ttgcaatacg gtgcacccgg
     2221 caccgagttc agtggatatg ccgatggctt gctggtaggt gagcaaccgc tgggtccctt
     2281 ccaggcgcaa cccgatccat tgagtttgaa actgggaggc tttgttcgtg gtgccgggca
     2341 tggcgccacc ttccaggaca agtttggtca atactggcat gtgagcacca ccgtgctgtc
     2401 ggtgaagaat acatttgaac gtcgcctcgg catttggccc gccggatttg atgcggatga
     2461 tgtgatgtat tgcaacacta ccttcggcga ttatccgcat tatattcccg atgctggtat
     2521 tcggaatgac gggtatggca aggatggcaa gtcgccatac ttcacaggtt ggatgttgct
     2581 caattacaat aagccggtga tggtgtcttc cacactgggc ggccaggtac ccaaccatgc
     2641 ggtggacgaa ctgatcaaaa cttattggag tgcggaaaca ggcaatgcag gcgaattcat
     2701 tcaaagtgat ttgggaaggg tgagcactgt gcgtgccata caaatcaact acgccgacca
     2761 ggatgtggcg caagacaggc tgggcaagat accgagccag taccatcagt acaaagtata
     2821 cagttcactg gatggaaaga agtggacatt gctgctggac aaaagcaaaa acacgactga
     2881 tgtgccacac gattatgtgg aattgccgca ggcagcacag gcccgttaca tcaaactgga
     2941 aaacgtgcac atgccaacgg gcaaatttgc catcagtggt ttgcgggtgt ttggcaatgg
     3001 caatggagaa aagccttctg ctgtaaaagg gttcattgta ttacgaactg agaaggataa
     3061 gagaagcgcc ttcatcaaat ggcagcccgt tgacaatgca tttgcttaca acatttatta
     3121 cggcactcat cccgataagt tgtacaactg catcatggtg catgccaaca atgagtactg
     3181 gatgaaggcc atggatgcat taagcactta ttattacagc attgaagccg tgaatgaaaa
     3241 cggaaccagt gaaagaacca aaccggttaa aacagaatga agggaatgag aattatatta
     3301 ggatggatcc ttgttttcaa gtggggtgtg ctgttggcac aggataccac attgccttat
     3361 tacaaagaga tccgtgcttt ccgggtgcag gacagtcttc agtttcctgc cgcccatcaa
     3421 atcctgttca tcggcagttc ctcttttacc cgttggaccg atgtgcaaca atattttccc
     3481 ggttacaaaa ttctcaaccg ggcattcggc ggctcttcac tgctcgatgt aattcgttac
     3541 cgttatgaag tgatctatgc gtaccagccg aaacaaattg tgatgtattg cggcgagaat
     3601 gattttgcca gcagtgatac agttacagtt actatgctgg ttcagcggtt taaaaccttg
     3661 ttccaactca ttcgggcaaa gtatcccgat gtaccctttg tttatgtgtc tatgaatcca
     3721 agcccaagcc ggcgaaacct ctttgcgaaa tacatagaag cgaatcgcca gatacgccag
     3781 tatctgtcgg ctcataagca aaccaggttt gttgatgtgt acaatgctat ggtgcaggcg
     3841 aacggcgaac ccaacggctc catattttca gatgacagtc ttcacatgaa cagccagggc
     3901 taccggatct ggcaaaaaaa attgcaacca gttttgatca agtaataaaa tacatccaac
     3961 catgaaaaga atgaagcaat ggctgctgat gatctgcctg atggcaagcc tgccatcgat
     4021 ggcacaaacc aacagcgatc cgaagatgaa agctttcatc gacaacctga tgaagcagat
     4081 gacgctggaa gaaaaattgg gacaactcaa tctgcccggt gccggtgata ttgtgacggg
     4141 ccaggccggc aatgctgata tcgccaggaa gatccgtgaa ggcaaagtgg gcgggttgtt
     4201 caatattaaa ggcgtggaaa agatccgcga agtgcagaaa ctggcagtgg agcaaagtcg
     4261 cctgaagatc cccttgctct ttgcaatgga tgtgatccat ggctaccaga ctgtttttcc
     4321 cattccgttg ggcctgagtg cttcctggga tatgaaggcg gtggagcgaa gcgcacagat
     4381 agccgctaaa gaagccagcg ccgatggtat caactggaca tttagtccga tggtggatat
     4441 tgcccgcgac ccccgttggg ggcgaatggc cgaaggcggt ggtgaagatc cttacctcgg
     4501 cggtgaaatt gccaaagcca tggtgcgtgg ctaccagggc aaagacctga aggccaacaa
     4561 taccattatg agttgtgtga aacactttgc attgtacggc gctgcagaag ccggccgcga
     4621 ctacaacaca accgacatga gtcaccagcg catgtacaac gaatactttt tgccatacaa
     4681 agccgctgtg gatgcagggg ccggtagtgt gatggcatcc ttcaatgaaa tagatggggt
     4741 acctgccacc gccaacaaat ggctgatgac cgacgtgttg cgcaagcagt ggggttttgg
     4801 cggttttgtg gtttcggatt ataccggggt cggcgaaatg acttcgcatg gcattggcga
     4861 caccgcagcg gtggcagccc gtgccctgat ggcgggactt gatatggaca tggttagcga
     4921 agctttgtta accacggtgc ccaaatcgtt gaaagaagga aaggttacca tggctcagat
     4981 tgatgctgcc tgtcgccgca tcctggaagc caaatacaaa ctgggattgt ttgaggatcc
     5041 ttaccggtat tgcgatatca gccgcccggc caaagaagtg tacacagctg aaaataggaa
     5101 ggaggcacgc accatcgctg cacaaagctt tgtgctgatg aagaacgatg gcaacatatt
     5161 accattgaaa cgtggaagca aaatagccct ggtgggtcct ttggccgata atcgggagaa
     5221 catgcccggc acctggagcg tggcggccaa tttttcaaag gcgatttcag tattggaggg
     5281 aatgaaggaa gttggcggcg ccggtacgca gattgtgtat gccaagggca gcaacctcga
     5341 ctatgatgcc agcttcgaag aacgtgccgg tatgtttggc aagaatcttg gccgcgacaa
     5401 caggcctgct gagcaaatca tagcagaggc ggtagcagcc gccaaagatg ccgatgtgat
     5461 agtagcggcc gtgggcgaaa gtgctgaaat gagtggtgaa tgcagcagta tgaccgacat
     5521 tgaattgcgg cagtcgcaaa aagacttgct gaaagcactg aaggctaccg gcaagccatt
     5581 ggtcattgta ttgtttgccg gacgcagcat ggccattgcc gaagaagcaa aggaatatcc
     5641 ctgcattctc aatgtgtggt tcccgggtag tgaagcaggt tatgcgattg ccgatgcctt
     5701 gttcggcgat gtcaacccat caggaaagct gagtgccacc tggccgcaga acgtgggaca
     5761 aatcccgctc ttttacaatc acaagaatac gggtcgtcca ttgggcgagg gcaaatggtt
     5821 cgagaaattc aaaaccaact acctcgatgt aagcaacgat ccattgttcc ccttcggcta
     5881 tggactgagt tataccagct ttacgtacag tgatgtgaaa ttgagcgcca cctccctcaa
     5941 aggcaaccaa acactcaccg ccactgtgtc tgtaaccaat agcggcaagg tggccggcaa
     6001 ggaagtggtc caattgtacc tccgcgatgt agtaggcagt gtgacccgcc cggttaaaga
     6061 actgaaagga tttgagaaga ttgaactgca gcccggtgaa accaaaaccg ttacctttcg
     6121 aatcacacct gagctgctga agttttacaa ttatgatttg aaattcgatt gggaagctgg
     6181 tgagtttgac atcatgattg gaggcaacag ccgggatgtg aaaacaaagc gggttaactg
     6241 gcagaaataa ctgatcgata catgaaacag aaaatgatat atgcatgcct ccttttgggg
     6301 gcatgtgtgt ttgcaaaagc ccagcctatg tcatttgcca acaaccaggt agtagcgcat
     6361 cgcggtgcct tcaaggccaa tcgttttccg gagaattcca ttgcatcgct gcgggaagct
     6421 attcgtttgg gatgcaccgg ctctgaattt gatgtacgca tgactgcgga tgattcactc
     6481 atcatcaatc atgatgaaca ctatcatgac ctggagatcg agcaaacatc atttgcacaa
     6541 ctgagccaat tcaagctgtc gaatggagag gcgctgccca cattgaggca atacctgcta
     6601 gcgggaatga cgaacaacca gcat
//
LOCUS       DATIQF010000868         2177 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_135532,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000868 DATIQF010000000
VERSION     DATIQF010000868.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135532"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1063)
                     /locus_tag="VLL95_14940"
     CDS             complement(<1..1063)
                     /locus_tag="VLL95_14940"
                     /inference="COORDINATES: protein motif:HMM:NF017039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40203.1"
                     /translation="MSTLFLAPMAKGSSETPLMQQHRAIKQKYPDAVLLFRVGDFYET
                     FGQDAIVASQVLGITLTRRNNGGAAESELAGFPHHALDTYLHKLVKAGYRVAICDQLE
                     DPKQAKGIVKRGVTELVTPGVATNDKLLEHNRNNFLAGMHVQDDDHVGLAFLDISTGE
                     FFVAEGDREYADKLLQSLQPAEVVFQRQYQKKFKEWFAGKFYTYAMEEWIFDEAFARE
                     TMLRHFGTHSLKGFGVEEMRDGIIAAGAVFHYLKETEHPNLQHITHLQRINRDEHMWM
                     DRFTIRNLELVGNGRSDQLSLLDVLDNTVSPMGARLLKRWLLLPLSDLGKIQQRLDAV
                     EWLVAHPDMRSQLQAAVKQC"
     gene            1109..1441
                     /locus_tag="VLL95_14945"
     CDS             1109..1441
                     /locus_tag="VLL95_14945"
                     /inference="COORDINATES: protein motif:HMM:NF016245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family protein"
                     /protein_id="HSR40204.1"
                     /translation="MRTILLLLASNIFMTIAWYGHLKDKNIPLWKAILVSWGIAFFEY
                     CLMVPANRFGYNHSGFNAFQLKIIQEVITLVVFTVFAVWFLKEKFEWRYIASFMCIMG
                     AVYFAFKN"
     gene            1445..>2177
                     /locus_tag="VLL95_14950"
     CDS             1445..>2177
                     /locus_tag="VLL95_14950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40205.1"
                     /translation="MKFRTLTFLLGLCAAASAQEIYLLDFSIIGDKVFISRVRNISNN
                     PGYDNQPSFTADGNSVLYAASRNGQTDILRYDIADSSKHWVTNTAGSEYSPIALENGS
                     GITAVKLDKNGFQRLWKFSNDGTDSSLVHPDLKIGYHLGLTSQKLACFVLDTDTSNSL
                     NIVDLPTNQRQLLCPKPGRCIKDIPNQNAFSFVDKSDTAAWHINSYDLGSGQTKKIIT
                     TPKGSEDYCWTPAGNLLIASGPQIYW"
BASE COUNT          515 a          590 c          504 g          568 t
ORIGIN      
        1 cgcattgttt taccgcggcc tgcagttgcg atcgcatatc aggatgcgcc accagccatt
       61 ccacggcgtc caagcgttgt tggatctttc ccaaatcgct gagcggcagc aatagccaac
      121 gtttcaacaa gcgggcaccc atgggcgaca ccgtattgtc cagcacatcc agcagtgata
      181 attggtcgct tcgtccattc ccaaccaatt caaggttgcg aatggtgaaa cgatccatcc
      241 acatgtgctc gtcacgattg atacgctgca ggtgggttat gtgctgcagg ttgggatgct
      301 ctgtttcctt gaggtaatga aacacggcgc cggcagcaat gatgccatcc cgcatttctt
      361 ctaccccaaa tcctttgagg ctgtgggttc caaaatggcg gagcatggtt tcgcgggcaa
      421 aagcctcatc gaaaatccat tcttccatgg cataggtgta aaacttgccg gcaaaccatt
      481 ctttgaattt cttctggtac tgcctttgaa aaaccacttc agcaggctgc aggctttgca
      541 gcagtttatc ggcgtattca cgatcgcctt cggcaacaaa aaattcgccg gtagaaatat
      601 cgagaaaggc caggcccaca tggtcatcat cctgcacatg catgcctgcc aggaaattat
      661 ttcgattgtg ctcgagtagt ttgtcgttgg tggccacccc gggcgtcacc aattctgtca
      721 cgccccgttt cacaatgcct ttggcctgct tgggatcttc caactggtcg cagatggcta
      781 cgcggtaacc ggctttgacc agcttgtgca gataggtatc caacgcatgg tgcggaaagc
      841 ccgccagttc gctttcggcg gcgccaccgt tgttgcgccg ggtaagggta atgcccaata
      901 cctggctggc cacaatggca tcctggccaa aggtttcgta gaaatcgccc accctgaaca
      961 acagcacggc atccgggtat ttttgcttga tagcccggtg ctgctgcatc aatggagttt
     1021 ctgaacttcc ttttgccatg ggcgccaaaa atagggtgct caaaacccta tttcctccta
     1081 cattgctccc cacttattca caagttgtat gcgtacgatt cttttgcttt tggcctccaa
     1141 tattttcatg accattgcct ggtacggcca cctcaaagac aagaatatcc ccctttggaa
     1201 agctatcctc gtcagttggg ggatcgcgtt tttcgaatat tgcctcatgg tgccggctaa
     1261 tcgttttgga tacaaccatt cgggtttcaa tgccttccag ctcaaaatca tccaggaagt
     1321 catcacgctg gtggtgttca cggtctttgc tgtttggttt ttgaaagaaa aattcgagtg
     1381 gcgctacatc gccagcttta tgtgtatcat gggcgccgta tattttgcct tcaaaaacta
     1441 agaaatgaaa ttccggacac tcactttttt attgggcttg tgcgccgcag catctgcgca
     1501 ggaaatttac ctgctcgatt tcagcatcat tggtgacaaa gttttcatca gtcgtgtccg
     1561 aaacatttcc aacaatcccg gttacgacaa ccaacccagt tttaccgccg atggcaacag
     1621 cgtgttgtat gccgcctccc gcaatggcca aactgatatt ctccggtacg acattgccga
     1681 cagcagtaaa cattgggtca ccaataccgc cggcagtgaa tattcaccca ttgctttgga
     1741 aaatggttcg ggcattactg ccgtgaaact ggataaaaat gggttccagc gtttgtggaa
     1801 gttcagcaac gacggcacgg acagttccct cgttcatccc gatctgaaaa ttggatacca
     1861 ccttgggctc accagtcaaa agttggcctg ctttgtcctg gatacagata cctccaactc
     1921 cttgaacatt gttgatctgc caaccaatca gcgccaactg ctctgcccga aacccggccg
     1981 ctgtatcaaa gacattccca atcaaaacgc tttctctttt gtagacaaat cggatacggc
     2041 agcctggcat atcaattcgt atgacctggg ttccggccaa actaaaaaga tcattaccac
     2101 acccaagggc tccgaagatt attgctggac accagccggc aacctgctga tagcaagtgg
     2161 tccacagatc tattggt
//
LOCUS       DATIQF010000869         2189 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_150821,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000869 DATIQF010000000
VERSION     DATIQF010000869.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150821"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..798)
                     /locus_tag="VLL95_14955"
     CDS             complement(<1..798)
                     /locus_tag="VLL95_14955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40206.1"
                     /translation="MKSYKKLSIALLSLSLAVTSCKKDLAIENPNNPTPETLNTEKGI
                     LSFATGGVYITGFRSVKYLDGVYGPFWSGATGFHDLMGDIVGADAANAYLNQMGCPEY
                     VLHDDGTKVLNPGRPNNQIELIRNINVNSQAGGNFLYYEWAYMYNLIGSCNLLLEKVE
                     TAELTGDIASKKAAIRAWAYWWKGFAYSRIGSIYYAGLILNSAFETNGNYVSKEKIIE
                     EASANLDKAVAAAKAAPSASEFLNTWKAIIPAFFQLGTGGAMTAAELE"
     gene            complement(891..>2189)
                     /locus_tag="VLL95_14960"
     CDS             complement(891..>2189)
                     /locus_tag="VLL95_14960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40207.1"
                     /translation="AFGKGSKPFTFPRGDAYVRLSGMNFWKDSKISNTIAEWKFRAAY
                     GEAGIQPGAYDRFPILNTSTIGNQSALSTPVTNANPALQVEVAKELEIGTDIGFNLGR
                     NQWLRTASVSFTYWDRTSENVIDQVDVAPSLGIGRQLTNAMTLASNGIQASLNLNVLT
                     SRDLTWNFTANFSKQKSIIESVAGNAELIKTSAAGSANYVLRAGEQIGQLYGWSLLRS
                     VTAKDAKGSFYIPEDQQANYEVASNGWVVNKSTKQPFATPERNSLGDPNPDFNMAFIN
                     EFNYKGFLTFYFQWDWLQGNNIYNQTKGWMYRDGIHKDYDQPVTINGQTDAWSAFYRG
                     VYAARSFNGTKNYFMEDASFWRLRNLALGFDLARMIKIKGVNRMQLVVTGRNLLTFTN
                     YTGMDPEVSSGTINSGWDRGVDHNTIPNVKTWQVGLNLGF"
BASE COUNT          536 a          529 c          531 g          593 t
ORIGIN      
        1 ctccaattca gcagccgtca tggcgccgcc tgtacccaat tggaaaaagg caggaataat
       61 ggctttccac gtgttcaaaa actcgctggc agatggagct gccttggccg ctgccacagc
      121 cttgtcgagg ttagcagagg cttcttctat aattttttct ttggatacat aattgccatt
      181 ggtctcgaat gcactgttca ggatcagacc agcataataa attgaaccaa tgcggctgta
      241 ggcgaaacct ttccaccaat aagcccaggc acggatggca gcctttttag aagcaatatc
      301 tcctgtaagc tcggctgtct ccactttctc caacaacaaa ttgcaggatc cgatcaggtt
      361 atacatgtac gcccattcat agtaaaggaa gtttccacct gcctgggagt tgacgttgat
      421 gttcctgatc agttcaatct ggttgttggg cctgcctggg ttcaacacct tggtgccgtc
      481 atcatgcagt acatattccg ggcaacccat ttggttgagg taagcgttgg ccgcatcggc
      541 gccaacaatg tcacccatca ggtcatggaa gccggtagca ccactccaga atggtccata
      601 aacaccatcg aggtatttca ctgatcggaa tcctgtaatg tacacaccac cagtggcaaa
      661 gctcaggatc cccttttcgg tattcaacgt ctccggcgtg gggttgttgg ggttttcaat
      721 agccaagtcc tttttgcagc ttgtcaccgc caaactaagc gacagcaggg ctattgatag
      781 ttttttatat gatttcataa aagccatgtt tgttaataag atttatagtc aggaataatt
      841 cctcttttct ttcaatttcc cttgttcttt agcgggtttg attcgcccga tcagaaacca
      901 aggttcaacc caacctgcca ggtttttacg tttggaatgg tattgtggtc aacacccctg
      961 tcccaacctg agttgatggt acctgagcta acttcgggat ccatgcctgt gtaattggta
     1021 aaggtcagca ggttacggcc ggtaaccacc agctgcatcc tgtttacacc tttgatcttg
     1081 atcatgcggg caagatcgaa accaagagcc aggttcctta agcgccagaa agaggcatct
     1141 tccatgaagt agtttttggt gccgttgaaa gaccgggcag cataaacacc acgatagaaa
     1201 gcagaccatg catcggtttg gccgttgatg gtaacaggct gatcataatc cttgtgaata
     1261 ccatcgcggt acatccaacc tttggtttgg ttgtagatgt tgttgccctg cagccaatcc
     1321 cactggaagt agaaggtcag gaatcctttg tagttgaatt cattgatgaa agccatgttg
     1381 aaatcggggt tggggtcgcc caacgaattt ctttcaggag tggcaaaagg ttgcttggtg
     1441 gatttgttta ctacccaacc attgctggcc acttcataat tggcctgctg gtcttccgga
     1501 atgtagaagc ttcccttggc atcttttgca gttacgctgc gcagcaggct ccagccatac
     1561 aactgaccga tttgttcacc ggcgcgaagc acgtagttgg cgcttccggc ggctgaagtc
     1621 ttgatcagtt cagcattgcc agccacagat tcgatgattg acttttgctt gctgaagtta
     1681 gcagtgaagt tccaggtaag gtcgcgactg gtgagtacat tcaggttcaa tgaagcctgg
     1741 attccattgc tggccaatgt catggcgttg gtcaactggc ggccaatacc gagacttgga
     1801 gccacatcca cctggtcaat tacattctca gatgtcctgt cccaataggt gaaacttact
     1861 gaagcagtac gcaaccattg gttacgacca aggttgaagc cgatgtcggt tccgatttcc
     1921 aattctttgg ccacttctac ctgcagggca gggttggcat tggtaacagg ggtagacaat
     1981 gcactttggt tgccaatggt agaagtattc aagatgggga aacgatcata agcacctggc
     2041 tgaatacccg cttcaccgta ggcagcacgg aacttccatt ctgcaatcgt attagaaatt
     2101 ttgctgtctt tccagaaatt catgcccgac aagcgcacat aagcatcacc acgagggaag
     2161 gtgaagggtt tggaaccctt gccgaatgc
//
LOCUS       DATIQF010000870         3814 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_104666,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000870 DATIQF010000000
VERSION     DATIQF010000870.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3814
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104666"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2123)
                     /locus_tag="VLL95_14965"
     CDS             complement(<1..2123)
                     /locus_tag="VLL95_14965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40208.1"
                     /translation="MFRKKIGIITGLVLLLSSLVSEIATAQVSSVTFGKNRIQYRKYN
                     WRFYQTPNFNVHFNDGGLELAKYVLELAEEELPQLEKFTETALQRRANIVLYNSYDDA
                     QATNIGLGTNAPDAGGLTQLVNNKMIIYFNGNHADLKRQIREGIARILVDTRLFGENI
                     GEIAGNATLLDLPKWMTDGYVSYAAEPWSIAKDDQMKNLLLANEYRNFYQLAYHHPAL
                     AGNAFFHYLATHYKKENVTYFMYLSILYKNTNTASVRITKMRLKDLLSQFMQAESDKY
                     YKEIRGRRNYPKGSIAITEAVDANKDFYHFAPNPNPRSYTYAVAEYKKGKYSVNLYEN
                     YVNRKRLISNGVRVMMHERNPLYPVMAWDGKGSRLSVIYWEKDKVKLMVYDLTQADIV
                     IRKDLPFDQVQDAQYFLDHKRLILSAVKNGHTDIYLYYVETGKVEQITDDVWDDLDAS
                     FVSFPNKYGIIFSSNRPGPSVAGGDTSHPSDYPYNVFLIDVDEKGGYRQVTQLTDQKF
                     GNARFPTQYNMNHFTFVSEENGIGNRYAGFFTTKAEGLDTLVIIGDEVLRNPSLKEVD
                     STLKAWERDEPDSIGLIALTKDSTYTFPITNYQSSLLESRIAGDKGQVSEVTQQSDIK
                     MLYRLRVDSLALRRRNVSAKPTEFIREQMAEARKATGQATTYGGNNADSADNFSFFGE
                     FTGKTDTARLRSSYLRPRGPQKTDQR"
     gene            2276..2914
                     /locus_tag="VLL95_14970"
     CDS             2276..2914
                     /locus_tag="VLL95_14970"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSR40209.1"
                     /translation="MLQIAMFTVSPIQENTYLLYNEAGQAVLIDPGCYFQEEKEELAA
                     FMESHHLQLEKLLQTHCHLDHVFGLKWAAEQWQLQPWMHANEEMVLQWAPASGNMWNL
                     PFDNYEGAVHHLQAGQAIRLGNDSLTVLFAPGHSPGHVCFYCKDQGFVIGGDVLFQGS
                     IGRTDLPGGSHSQLLDSIRTQLFTLPDETVVYPGHGPATTVGEEKRSNPFFN"
     gene            complement(2924..>3814)
                     /locus_tag="VLL95_14975"
     CDS             complement(2924..>3814)
                     /locus_tag="VLL95_14975"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR40210.1"
                     /translation="EPMKEGEPAMSGRLLVDDDWLEKLLLGREASPVFSAEFPARRIS
                     TAMTWNDLVLHPQTLEQVHDIRLWMEHRDKVQADAVLARKIKPGFRVLFYGPAGTGKT
                     LTATLIGKEFNLPVYRIDLSQVVSKYIGETEKHLEWVFTRAVRKNWILFFDEADALFG
                     KRTNVQSAHDKYANQEVAYLLQRIEDYEGLLILASNFKGNIDDAFLRRFHSIIHFPMP
                     NANERMRLWQGSIPASLQPEPSIDWMKLASAYEITGAGILNVMHYAALRSFSRHENTL
                     HESDLVEGIRKEFRKEEKGF"
BASE COUNT          852 a          942 c          992 g         1028 t
ORIGIN      
        1 cgttgatcgg ttttttgggg accccttgga cggaggtacg aagaacgcag acgtgcagta
       61 tccgttttgc cggtgaattc accaaagaat gaaaagttgt ccgcggaatc ggcgttgttg
      121 ccgccataag ttgttgcctg cccggttgct tttcgggctt cagccatttg ttcacgaatg
      181 aactcggtag gcttggcact cacattgcga cgcctcaagg caaggctgtc tacccgcaag
      241 cggtaaagca tcttgatgtc gctttgctgc gtcacttcac tcacctgtcc tttgtcgccg
      301 gcaatgcggc tttcgagaag gctgctctgg tagttggtga tcgggaaggt ataagtagaa
      361 tcttttgtca atgcaatcaa accgatgctg tccggctcat cccgttccca tgccttcaat
      421 gtgctgtcca cttctttgag cgatggattg cgcagcactt catctccaat gatgaccagt
      481 gtatccaatc cttcggcttt ggtggtgaag aaaccggcgt agcggtttcc gatgccattt
      541 tcctcactca caaatgtgaa gtggttcatg ttgtattgcg tgggaaaccg ggcatttcca
      601 aatttctggt cggtgagttg cgtgacctgc cgatatcctc ccttttcgtc cacatctatg
      661 aggaaaacat tgtatggata atcgctggga tgcgaagtat cgccaccggc taccgaagga
      721 cccggacgat tgctgctgaa gatgatgcca tacttgttgg ggaaagaaac aaaggaggcg
      781 tcaaggtcat cccacacatc gtcggtgatc tgctccacct ttccggtttc cacgtagtac
      841 aggtatatat cggtatggcc attctttaca gcgctcagta taagccgctt gtggtcgagg
      901 aaatactgcg catcctgtac ctggtcgaaa ggcaggtctt tgcgtatgac gatgtccgct
      961 tgtgtcaaat cgtacaccat cagcttcacc ttgtcctttt cccaataaat cacactcagg
     1021 cggctgccct tgccatccca ggccattaca ggatagagcg ggttgcgttc atgcatcatt
     1081 acccttacgc cattgctgat gagccttttg cggttcacgt agttttcgta gaggtttaca
     1141 ctgtacttac cctttttgta ttcggccacg gcataagtgt aagaccgtgg attggggttg
     1201 ggggcaaaat ggtaaaaatc cttattggcg tccacggctt ctgtaatggc aatgcttcct
     1261 ttggggtagt tgcgccgtcc acgaatttct ttgtagtact tatccgactc tgcctgcata
     1321 aactggctca gcaggtcttt cagtctcatt ttagtaatgc gaacagaggc ggtattggtg
     1381 tttttgtaca aaatagagag gtacatgaag taggtaacgt tctctttttt gtaatgggtg
     1441 gccaggtaat gaaaaaacgc attgcctgcc aatgccgggt gatgataggc cagttggtaa
     1501 aaattgcggt attcattggc cagcagcagg tttttcatct ggtcatcctt ggcgatgctc
     1561 cagggttcgg cggcatagct cacatatcca tcggtcatcc atttgggaag gtcgagcagg
     1621 gtggcattgc cggctatttc accaatgttc tcgccaaaca aacgggtgtc taccaggatg
     1681 cgggcaatgc cttcgcgtat ttgtcgcttc aggtcggcat ggttgccgtt gaagtaaatg
     1741 atcattttat tgttcaccag ttgcgttagg ccaccggcat caggtgcatt ggtgcccaag
     1801 ccaatattgg tggcctgcgc atcatcgtag ctgttgtaca gcacaatgtt tgcccggcgc
     1861 tgcaaagcgg tttcggtaaa cttctccagc tgcggcagtt cttcttcggc tagttcgagt
     1921 acatatttgg ccaattccag gcccccatca ttgaagtgta cattgaagtt gggcgtttgg
     1981 taaaaacgcc agttgtattt cctgtactga atacggtttt tgccaaaagt tacactggat
     2041 acctgcgccg ttgcgatctc agaaaccagg ctgcttaaca gcaacacgag acccgttata
     2101 attccaattt tctttcgaaa catctacaac cctgtttatt ggtctgacaa attaagcatt
     2161 taaaagtagt ggatgcacgg aaactgcctg taggtggggc attgcataca ttttatttaa
     2221 cactccggtc acaggcgtga aacccccaat tttgcacctg tcaaacgtaa taaacatgct
     2281 gcagattgcg atgttcactg tcagtcctat ccaggagaat acttatttgt tgtacaacga
     2341 agccgggcag gctgttctga ttgacccggg atgctatttc caggaagaga aggaggagct
     2401 ggctgcattc atggaaagcc atcatttgca gctggagaaa ttgctgcaaa cccactgcca
     2461 cctcgaccat gtgtttgggc tgaaatgggc agcggagcaa tggcaactgc aaccatggat
     2521 gcatgctaat gaagaaatgg tactgcagtg ggcaccggca tctggcaaca tgtggaacct
     2581 gccttttgat aactatgagg gggccgtcca ccacctgcag gcagggcagg caatacgcct
     2641 gggcaatgat agccttaccg tgctttttgc accgggccat tcgccgggcc atgtttgctt
     2701 ttattgcaaa gaccaggggt ttgtcattgg gggcgatgtg cttttccagg gcagcattgg
     2761 tcgaaccgat ttgccgggcg gcagccattc gcaattactg gacagcatcc ggacacagtt
     2821 gtttacctta cccgacgaaa ctgtggtcta tcccggtcac ggacctgcca ctactgttgg
     2881 cgaagagaag cgaagcaatc ctttttttaa ttgaaaagca gtttcagaac cctttttcct
     2941 ctttcctgaa ttctttccga atgccctcca ccaggtcgct ttcatgcaag gtgttttcat
     3001 gcctgctgaa ggagcgcagg gccgcataat gcatcacatt caggatgccc gcaccggtaa
     3061 tttcatacgc agatgccagt ttcatccagt cgatggaagg ctcgggttgc aggctggccg
     3121 ggatactgcc ctgccatagt cgcatccgct cattggcatt gggcatggga aaatggatga
     3181 tgctgtgaaa ccggcgcaga aaggcatcgt caatattgcc tttgaaattg gaggcgagga
     3241 tgagcaggcc ttcgtaatct tcaatgcgct gcagcaggta ggccacttcc tggttggcgt
     3301 atttgtcgtg ggcactttgc acattggtac gtttgccaaa caatgcatcg gcttcatcaa
     3361 aaaagaggat ccagtttttg cggactgccc tggtaaaaac ccactcgagg tgtttttcgg
     3421 tttccccgat atacttgctc actacctggc tcagatcgat gcggtacaca ggcagattga
     3481 actctttgcc aatgagggta gcagtgaggg ttttaccggt acccgcagga ccatagaaca
     3541 acaccctgaa gccgggtttt attttacggg ccagcactgc atcggcctgc accttatcgc
     3601 gatgctccat ccagaggcgt atgtcgtgta cctgttccag ggtttgcgga tgcagcacca
     3661 ggtcgttcca tgtcatggcg gtggaaatgc gacgggccgg gaattcggcg ctgaaaacag
     3721 ggctggcttc tcgccccagc agcaatttct ccaaccagtc atcgtccaca agcagccgac
     3781 cgctcatggc gggctctcct tccttcatgg gctc
//
LOCUS       DATIQF010000871         1758 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_13783, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000871 DATIQF010000000
VERSION     DATIQF010000871.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1758
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13783"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(131..>1758)
                     /locus_tag="VLL95_14980"
     CDS             complement(131..>1758)
                     /locus_tag="VLL95_14980"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HSR40211.1"
                     /translation="GELATAAAGIELPGEVPLKDRKAFKLIGKPIRNIKNKDIITGTP
                     IYGLEYHREGMVIAVIQRPPAFGTKIKSLDSAAAKAQPGILDVVQFQNNVAVVGRSTW
                     EVMKAKQLLKVEYEKAAAIESSADHDALFKKLLDAPNATVQRKDGDVATAFAGAAKVV
                     KAEFQCPFLPHNPLEPMNFFAHVKEDSVELVGPTQTPQAARQAVSKLLNIPQEKITVD
                     ITRLGGGFGRRLKFDYVLEAAELSSIIKKPVKLIWSREDDMMGGSYRPAVRYRFEAAL
                     DAQNNLIGYKLRGVGINAGNSTRQDNFPSGAVDNLLIETIDHQSPITTGAWRAPITNF
                     LAFAEQTFLDEVAEAAGKDPVQFRLELLAKARQSSLKKGYDVERMETVIKTVAEKSQW
                     GKKKTVHQGFSVYFSHASYVAQVAEVVMKDGQPALQKIHAVADCGQVINMSGALQQVR
                     GAIVDGYGHAMFGKLTFTEGKAEQNNFSNYRLIRMKEIPEIDVAFVDNGKDPTGLGEP
                     ALPPTGGAVANAIYKASKKRIRQQPFIDDPLFA"
BASE COUNT          349 a          487 c          438 g          484 t
ORIGIN      
        1 ccgctgcatc atgttcttta gggtttctat aaagttgcag gcagatcagt ccatccgcca
       61 aaccgctggt acaaaaaatg cgaaggattt tcccttcgca ttgatctttt ctgattcgct
      121 ccttcttgcc tcaggcaaac agcgggtcgt cgataaacgg ctgctgccgg atgcgttttt
      181 tagaagcctt gtaaatagca ttcgccacgg cgccaccggt tggcggcaac gctggctccc
      241 ctaatccggt cgggtctttg ccgttgtcta cgaaggctac gtcaatttcc gggatctctt
      301 tcatccggat caggcggtaa ttgctgaagt tattttgctc tgcctttcct tctgtaaaag
      361 tcagtttgcc aaacatggca tggccgtagc catccactat agcgccgcga acctgctgca
      421 gggcgccgct catattgatg acctgtccgc agtcggccac ggcatgaatc ttttgcaatg
      481 ccggttggcc atccttcatc accacctcgg ccacctgtgc cacgtatgaa gcatgcgaaa
      541 aatagacgct gaaaccctgg tgtacagttt tcttcttacc ccactgcgat ttttcggcca
      601 cggttttgat cactgtttcc atgcgttcca catcataccc ttttttgagc gatgattgcc
      661 tggctttggc caacaattcg agcctgaact gcaccgggtc tttgccggcg gcttctgcca
      721 cttcatccag gaaagtctgt tcggcaaacg ccaggaaatt ggtgatgggc gcccgccagg
      781 caccggtagt gatgggtgat tgatgatcga tggtttctat cagcaaattg tcaacggcgc
      841 cggaagggaa attatcctgc cgggtgctat tgccggcatt gatgcccacg ccacgcagtt
      901 tgtagccaat gaggttgttc tgcgcatcga gtgccgcttc aaaccggtag cgaacggccg
      961 gccggtagct gccgcccatc atatcatctt cccggctcca gatcaatttt accggcttct
     1021 tgatgatgct tgacagttca gcggcttcca gtacgtaatc gaatttcaat ctcctgccaa
     1081 aaccaccacc aagtcgggtg atgtctacgg ttattttttc ctgaggaata tttagcagtt
     1141 tgcttaccgc ctgccttgct gcctgtggcg tttgcgtggg gcccaccagt tctacgctgt
     1201 cttcttttac atgggcaaaa aagttcatcg gttccagtgg gttgtggggc aaaaacggac
     1261 actggaattc agccttcact actttggcag cacctgcaaa tgcggtggct acatcaccat
     1321 ccttacgttg cacggtggca tttggagcat ccagcagttt tttgaacaaa gcatcatggt
     1381 cggcgctgct ttcaatggca gcggcttttt catattccac cttcagcagt tgcttggcct
     1441 tcatcacttc ccaggtagaa cggcccacta ccgccacgtt gttctgaaac tgcaccacat
     1501 ccagtatgcc gggctgtgct ttggcagcag cgctatccag cgatttgatc ttcgtgccaa
     1561 acgccggtgg tctttgaatg acggcgatta ccatgccttc gcggtgatat tcgaggccgt
     1621 atatgggcgt accggtgatg atgtccttat tcttgatatt cctgatgggc ttgccgatca
     1681 gtttgaatgc tttgcggtct ttcagcggca cttcaccggg cagctcaata ccagcagcgg
     1741 ccgttgccag ctcgccat
//
LOCUS       DATIQF010000872         2771 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_272532,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000872 DATIQF010000000
VERSION     DATIQF010000872.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2771
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272532"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..625
                     /locus_tag="VLL95_14985"
     CDS             <1..625
                     /locus_tag="VLL95_14985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40212.1"
                     /translation="TLFEKINITGATILNPYLLDSNGRNTKKYAWQGEKFSLGQFTNG
                     SLSFGASFQSKKKEDKKQQAGQESENYYTPDEQLRQQEYIRNNPGEFADFNVPWSLNV
                     AYALSFTRRLKPDYSGYETNVFSSLNLQGDFNISPKWKMGATTLVDLNEMKIGTLTMF
                     LSRELHCWQMSINIVPVGPFRSFNISISPRSAILRDLKVNRNRVFTE"
     gene            complement(657..1394)
                     /locus_tag="VLL95_14990"
     CDS             complement(657..1394)
                     /locus_tag="VLL95_14990"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSR40213.1"
                     /translation="MSISKKILGRIWALWGLVWFLFTLLIFVWPIVITFLIPEPNGVK
                     IFKAVSKFWMSLFLYGIGCPLRVTGKEHYNPAQCYVVTANHQSLMDVPLLTPFFPGPN
                     KTIAKKSMARIPIFGWVYTRGSVLVDRSSDASRKRSFDAMKRVLLEDKLNMAVYPEGT
                     RNRTGQPLKSFYDGAFRLARDTGKDIIPVIIRNTAKALPPSVPFFLWPTALEMHLLPP
                     VSAAGKTQEQLKEEVRKEMWDYIAAHP"
     gene            complement(1406..2083)
                     /gene="ung"
                     /locus_tag="VLL95_14995"
     CDS             complement(1406..2083)
                     /gene="ung"
                     /locus_tag="VLL95_14995"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: protein motif:HMM:NF003588.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HSR40214.1"
                     /translation="MDVQIAESWKARLADEFAKPYFQQIVLHLKTERAAGKIIYPPGS
                     LIFNAFNLTPFDAVKVVIIGQDPYHGPGQAMGLSFSVPRGVPAPPSLVNIFKELKQDI
                     GMNIPSHGDLTAWAKQGVLLLNASLTVRANEPNSHAQIGWHQFTDAVIRELSEHKEGV
                     VFLLWGRFAQDKQVLIDGLKHHILKAAHPSPFSADKGFFGCRHFSKTNEYLVRNGKDP
                     IDWKLPE"
     gene            complement(2138..2575)
                     /locus_tag="VLL95_15000"
     CDS             complement(2138..2575)
                     /locus_tag="VLL95_15000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40215.1"
                     /translation="MAIYKELQLQSEVFAFPIDIKLNAEDWYVRIGAPLHQVVQIRPH
                     LFNPSLVTVNNLYGSCLFNLVADRKQGNYWTVWTEGTLKADLSLANNTVTIHDKESGQ
                     QFEFSVHNAADLGKQEKQMLAAAIMDTWQEISRTAAGTSRAMA"
BASE COUNT          702 a          747 c          682 g          640 t
ORIGIN      
        1 caccctgttt gaaaagatca acatcacagg cgccaccatt ctcaaccctt atttactcga
       61 cagcaacggc cgcaatacca aaaagtacgc ctggcagggc gagaagtttt cgctgggtca
      121 gtttacaaat ggcagcctca gttttggcgc ttccttccag agcaaaaaga aagaagacaa
      181 aaaacaacag gcaggccagg aatccgaaaa ttactacacc cccgatgaac agctgcgcca
      241 gcaggagtac atccgaaaca accccggcga gtttgccgac ttcaacgtac cctggagcct
      301 gaacgtcgct tatgccctga gttttaccag gcgactcaaa cccgactaca gtggttacga
      361 aaccaatgtg ttctccagcc tcaacctgca gggcgatttc aacatttcgc ccaaatggaa
      421 aatgggcgct accaccctgg tggatctgaa tgaaatgaaa ataggaaccc ttaccatgtt
      481 cctgtcaagg gaattgcatt gctggcaaat gtccatcaat attgtaccgg tggggccttt
      541 ccgctcattc aatatcagca tcagtccgcg ttctgccatc ttacgcgacc tgaaagtgaa
      601 ccgcaacagg gtgttcaccg aataatgcct gtggccgcca ctgcggccca aagtcatcag
      661 ggatgggctg cgatgtagtc ccacatctcc tttctcactt cctctttcag ttgctcctgc
      721 gtttttccgg cagcggatac cggcggcagc aagtgcattt ccaacgcagt gggccacagg
      781 aaaaaaggca ccgaaggcgg caatgctttt gccgtattcc ggataattac aggaatgatg
      841 tccttgccgg tatcccgggc cagtcgaaat gccccatcgt aaaaagattt gagtggctga
      901 ccggtacggt tgcgggtgcc ctcgggataa acagccatat tcaatttatc ttccagcaat
      961 acccgcttca tggcatcaaa gctgcgcttg cggctggcat cgctgctcct gtctaccaac
     1021 accgaacccc gcgtatacac ccaaccaaaa atggggatgc gggccattga ttttttggcg
     1081 atggtcttat tgggtccggg gaagaaaggg gtcagcaatg gcacatccat cagcgactgg
     1141 tggttggccg tgaccacata acattgggca gggttgtaat gctccttgcc ggtaacacga
     1201 agcgggcatc cgatgccgta caaaaacagg ctcatccaaa acttgctgac ggccttaaag
     1261 atctttacgc cattgggctc aggaatcaaa aacgtgatga caatgggcca tacaaaaatg
     1321 agcagtgtga acagaaacca caccaggccc cacaaggccc aaatcctacc caatattttc
     1381 ttactgatac tcatacacat tcattctatt caggcaattt ccaatcaatc ggatccttcc
     1441 catttcgaac caggtattcg ttggttttgc tgaaatgacg gcaaccaaaa aaacctttgt
     1501 cggcactgaa ggggctggga tgagccgctt tgaggatatg atgtttcaaa ccatcgatca
     1561 gcacctgctt gtcctgcgca aacctgcccc acaacaaaaa gaccacgcct tctttatgtt
     1621 cggagagttc acggatcacc gcgtcggtaa actggtgcca gccgatctgc gcatggctgt
     1681 tgggctcatt ggcccgcacc gtaagcgagg cattcaacaa cagtacgcct tgttttgccc
     1741 aggccgtaag atcaccatgt gaaggaatgt tcatgccgat gtcctgcttc aattccttga
     1801 aaatgttgac cagcgaaggt ggggctggaa cgcccctggg tacgctgaag gaaagtccca
     1861 tggcctggcc cggtccgtgg taaggatcct gcccgatgat gaccactttc acggcatcga
     1921 aaggggtaag attgaacgcg ttgaagatga gagaccccgg ggggtaaatg atcttgcccg
     1981 cggctcgctc cgttttgagg tgcaatacga tctgttgaaa atagggcttg gcaaattcat
     2041 ctgccagccg cgccttccag ctttccgcta tttgaacatc cattgcgaca aaaatagcag
     2101 atttggctgc ccttccattt ggcaactggc aaacagctta tgccatagcc ctgctggtgc
     2161 cggcagctgt ccgcgaaatt tcctgccagg tatccatgat ggccgctgcc agcatttgct
     2221 tttcctgctt gccgaggtca gcggcattgt gcacggaaaa ctcaaattgc tgaccactct
     2281 ccttgtcgtg aatggtcaca gtgttgttgg ccaggctgag gtcggctttc aaggtccctt
     2341 cagtccatac cgtccagtaa ttaccctgct tgcggtcggc caccaggttg aacaggcagg
     2401 aaccatacag gttgtttacc gtaaccaaag aggggttgaa caagtgtggc ctgatttgta
     2461 ccacctggtg cagcggggcg ccaatgcgca cataccagtc ttctgcgttc aatttgatgt
     2521 cgatgggaaa agcgaaaact tcgctctgca gctgtaattc cttgtagatg gccatgactg
     2581 taaattatca gcctaatgtt accaaattgt taccacgctg gaggtaacag aaatcacttt
     2641 tccacaatca aggtttgcgg tgacgagaaa gctgaaatga cagaggccca actaccccct
     2701 acccgatacc ctccaggaaa tcatagaggg aagtatcggt ggtgagcccc agtttcttgc
     2761 gcaggcggta c
//
LOCUS       DATIQF010000873         3248 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_135587,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000873 DATIQF010000000
VERSION     DATIQF010000873.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3248)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3248)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3248
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135587"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..822)
                     /locus_tag="VLL95_15005"
     CDS             complement(<1..822)
                     /locus_tag="VLL95_15005"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: protein motif:HMM:NF006156.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006102 - isocitrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HSR40216.1"
                     /translation="MAEKIKVANPVVELDGDEMTRIIWKFIKDKLILPYLDIDIKYYD
                     LGVEYRDETNDQVTVDAANAIRQYGVGIKCATITPDEARVKEFNLKQMWKSPNGTIRN
                     ILDGTVFREPIVIKNIPRLVNTWDAPIIVGRHAFGDQYRATDFVTKGKGKLTIKFEGE
                     DGSVIEHEVFNFKGDGVAMAMYNTDESIKGFARSCMNMALQKGWPLYMSTKNTILKKY
                     DGRFKDIFQEIYDNEFKAQFEAAGITYEHRLIDDMVASALKWNGNFVWACKNYDGD"
     gene            961..1659
                     /locus_tag="VLL95_15010"
     CDS             961..1659
                     /locus_tag="VLL95_15010"
                     /inference="COORDINATES: protein motif:HMM:NF024863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HSR40217.1"
                     /translation="MITIASCIKDDGAGYAMPRRTTDTTVAPPPPPAPKTYLALGDSY
                     TIGASVAQGERFPQQTSGILNSRGISLQAPYYIATSGWTTANLLFAIDQQNPAPGFDV
                     VSLLIGVNNQYQGRDTAEFRVQFTQCLQNAIRLAGNRKNRVFVLSIPDYSVTPFAKSL
                     DRKRIAAEIDGFNRINRQVCDSAGVAWMDVTQSSREALTDRSLIASDSLHFSGKEYAK
                     WAARLAPLIESALK"
     gene            1738..2070
                     /locus_tag="VLL95_15015"
     CDS             1738..2070
                     /locus_tag="VLL95_15015"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSR40218.1"
                     /translation="MTAIEVVQKQLDFYNRQDVKSFAAMFAEDVKVFQQLGDSLPSLQ
                     GRKAVEKRYGEIFAQYPQNYSTLLGRMVQGDFVIDHEWITGREKELRIMAIYEVKDGL
                     IRRCWFIR"
     gene            2159..2656
                     /locus_tag="VLL95_15020"
     CDS             2159..2656
                     /locus_tag="VLL95_15020"
                     /inference="COORDINATES: protein motif:HMM:NF022588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2911 domain-containing protein"
                     /protein_id="HSR40219.1"
                     /translation="MKKFLMLASVALVMSSCFGQDKKPASPRETVSSDNVSVSYGRPY
                     KKGRVIFGELEKYDKVWRTGANEATEITFKKDGTFAGKAVKAGTYTLFTIPTAGDWTV
                     ILNSELKQWGAYNYDKIKDKNVLEAKVPSKKLDAVVEQLTISLSASAMTIAWDQTEVT
                     IPMKF"
     gene            complement(2739..>3248)
                     /locus_tag="VLL95_15025"
     CDS             complement(2739..>3248)
                     /locus_tag="VLL95_15025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40220.1"
                     /translation="PSSRFDLFIDGKKEALTDQEVWGLHLFRTKAGCINCHNGGLFAD
                     NKFHNDGQTLFASSNEDLGLYHVTKNPADVGKFKTPSLREVVNTGPWMHHGNFPTLKD
                     VLFLYNTGNPAPVPKSYKGDRDSLLPKTSPMLRKLNLSNEEIDAVIAFLGAITTTPRR
                     LNPPQNFPN"
BASE COUNT          853 a          820 c          763 g          812 t
ORIGIN      
        1 atcgccatcg tagttcttac aagcccaaac aaagttgccg ttccatttca gggcacttgc
       61 caccatatca tcaatgaggc ggtgctcgta tgtgattcca gccgcttcga attgcgcctt
      121 gaactcattg tcgtaaatct cctggaaaat atccttgaaa cgtccgtcgt acttcttcag
      181 gatggtattc ttggtactca tgtacaaagg ccaacccttt tgcagcgcca tgttcatgca
      241 gctgcgggca aagcctttga tgctttcgtc ggtattgtac atcgccatgg ccacaccgtc
      301 tcctttgaag ttgaatactt catgctcaat caccgatccg tcttctcctt caaacttgat
      361 ggtgagcttg cctttgccct tggtcacaaa gtcggtggca cggtactggt cgccaaaagc
      421 atgacgaccc acgataatgg gagcatccca ggtatttacc aggcggggaa tgttcttgat
      481 cacgatgggc tcacgaaaca ccgtaccatc caggatgttg cggatagtgc cgttcgggct
      541 cttccacatt tgcttcaggt tgaactcttt cacacgagcc tcgtcaggag taatagtggc
      601 acacttgatg cctacgccat attgcctgat ggcattggca gcgtcaacgg tcacctggtc
      661 attggtttca tcacggtatt caacacccag gtcgtaatac ttaatatcga tgtcgagata
      721 cggaaggatc agcttgtctt tgatgaactt ccagataatt cgtgtcatct catcaccatc
      781 cagttctacc accggattgg ccactttgat tttttctgcc atagcaaatt gaacttttta
      841 atgtttcctg ccgtaattag attgttgaga caaaaaacaa cattccaatc cggcattttg
      901 aaagggcaac aaagatattc ttttgggtta ttcctcatgg taggtttagg ctggctattt
      961 atgataacga ttgcgtcctg catcaaagac gacggtgctg gctatgccat gcctcgaaga
     1021 accaccgata caacggtggc gccccctcct ccgccggccc ccaaaaccta cctggcactg
     1081 ggcgacagct acaccattgg cgccagtgtg gcccagggtg aacgattccc gcaacagacc
     1141 tccggtatac tcaacagcag gggcatcagc ctgcaggccc cctattatat tgcaaccagt
     1201 ggctggacca ctgccaattt gctgtttgcc atcgatcaac agaaccccgc acctggtttt
     1261 gatgtggtga gcctgctgat tggggtaaac aaccaatacc aggggcgtga tacggctgag
     1321 ttccgggtcc agtttaccca atgcctgcaa aatgccatcc ggctggccgg caaccgcaaa
     1381 aacagggtgt ttgtactgag catacccgac tacagtgtta cgccctttgc aaagtcgctt
     1441 gatcggaaaa ggatcgctgc tgaaatcgac ggtttcaacc gcatcaacag gcaggtatgc
     1501 gacagtgctg gtgtggcgtg gatggatgta acccaaagca gccgcgaagc cctaaccgac
     1561 cgtagcctta ttgccagcga cagcctgcac ttcagtggaa aagaatatgc gaagtgggca
     1621 gccaggctgg caccgctaat tgaatctgca ctcaaataac cctctatgaa aattgcatct
     1681 catcttcttg cagcaatatg ctttacatgt ctttccttgc ccgcaaaatc acagtcaatg
     1741 acagcaattg aagtggtaca aaaacaactg gacttctata accggcagga cgtaaaatct
     1801 tttgccgcca tgtttgcaga ggatgtaaaa gtatttcagc agttgggcga ttcattgccc
     1861 tccctgcaag gcagaaaagc cgttgaaaaa aggtatggtg aaatatttgc gcagtaccct
     1921 cagaactatt ccaccctgct ggggcgtatg gtgcagggcg actttgtgat cgatcatgaa
     1981 tggatcaccg gacgtgaaaa agaattgcgc atcatggcca tttacgaagt gaaagatgga
     2041 ttgatcaggc gctgctggtt catcaggtaa aacagcctct tgtcagtttt atcattttga
     2101 gttttaaatg ataaccccaa accaatagct ttaaccctca aatcaaaaaa caagtactat
     2161 gaaaaaattc ctgatgctgg ccagtgttgc cctggtgatg tcttcttgct ttgggcagga
     2221 taaaaaacca gccagtcccc gcgaaacagt aagttcagat aatgtgagtg tgtcctacgg
     2281 aaggccctac aaaaaaggtc gtgtgatatt tggcgaactg gagaagtacg acaaggtatg
     2341 gcgtaccggt gccaatgagg ctactgaaat taccttcaag aaggacggca ctttcgcagg
     2401 caaagcagta aaggccggca cttacacatt gttcaccatt cctactgccg gcgactggac
     2461 cgtgatcctc aacagcgaac tgaagcaatg gggtgcttac aattacgaca agatcaaaga
     2521 caaaaatgta ctcgaagcca aagtgccttc taaaaaactg gacgcagtgg tggagcaatt
     2581 gaccatcagc ctcagcgcat ctgccatgac catagcctgg gaccaaaccg aagtgacgat
     2641 cccgatgaaa ttctaatggc tttcgccaaa tgaaaaacac cccggccgcc aagaccgggg
     2701 tgtttttcat ttacaccatc ttatgctcgg gcagctccct aattcggaaa attctgcgga
     2761 ggattgagcc gccttggcgt ggtggtaatg gctcccagga atgcgatcac ggcatcgatt
     2821 tcttcattgc tgagattcag ctttcgcaac ataggcgaag tctttggcaa caaagaatcc
     2881 ctgtcgcctt tgtaactttt gggaaccggg gccggattac cggtattgta caggaacaaa
     2941 acatctttca gcgtgggaaa attgccatga tgcatccacg gaccggtatt caccacttca
     3001 cgtaaggaag gtgttttgaa ctttccaaca tcggcaggat tcttcgtcac atggtacaag
     3061 cccaggtctt cattagaaga agcgaaaagc gtttgcccgt cattatggaa tttgttatcg
     3121 gcaaacagcc caccgttgtg acaattgata caacccgctt ttgttctgaa cagatgcaaa
     3181 ccccatactt cctggtccgt aagcgcttct ttcttgccat caatgaacag atcgaagcgg
     3241 ctggaagg
//
LOCUS       DATIQF010000874         3182 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_181077,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000874 DATIQF010000000
VERSION     DATIQF010000874.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3182
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181077"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..458)
                     /locus_tag="VLL95_15030"
     CDS             complement(<1..458)
                     /locus_tag="VLL95_15030"
                     /inference="COORDINATES: protein motif:HMM:NF020084.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FIST N-terminal domain-containing protein"
                     /protein_id="HSR40221.1"
                     /translation="MLDAKGISIFGCTTNGEFIDEEPEKGSAAILLLEINKEYFEIYF
                     EEYPERNYREVAGTIAKKAIEKYSIPAFLIGLSHAAVDGEEILHGIEDVVGKQVNVFG
                     GAAGDDYAFTETFVFTNGKESNEAIVCIALDESNIKVKGIATCGWKAVGT"
     gene            complement(682..1059)
                     /locus_tag="VLL95_15035"
     CDS             complement(682..1059)
                     /locus_tag="VLL95_15035"
                     /inference="COORDINATES: protein motif:HMM:NF024759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HSR40222.1"
                     /translation="MTENEVSYKIRGAIFNVFNTLGPGLLESAYEAALIYEFRKMGLD
                     VDSQVALPLIYDEIKMDVGYRIDLLVEDLVIIEIKSVENLAEVHHKQVITYLKLSGKK
                     LGILVNFNCARIDESIFRKVNGL"
     gene            complement(1124..2275)
                     /locus_tag="VLL95_15040"
     CDS             complement(1124..2275)
                     /locus_tag="VLL95_15040"
                     /inference="COORDINATES: protein motif:HMM:NF020084.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FIST N-terminal domain-containing protein"
                     /protein_id="HSR40223.1"
                     /translation="MQAKSIKGKSPDEIQAALHQSMANGFKPSLAVVFISINNDIVAV
                     QRILNDLGIQIFGATSSGEFIDGDFSNGEIVVLLLDTNPAYFKILIGDYRDKQPEALA
                     REMAAEAMQAFENPSILLSASINITEATALLVGEPMLKAIESVTGKEVIVWGGRAGDD
                     FAFNESVVFTNQQSTKRGIIMLVFDGNKILVRGEAASGLKPVGTEKTITKAIDNWVYE
                     IDHQPAAEMVLKYLGLSMTQEEAETFFPREGIMFSVSREKGDPVIRGVGLFNWKDKSF
                     SVLGTILEGDKIRLTLPPDFETVEEMSFIAEKVNQEEIQGADALLMFSCIGRLGQFGP
                     LVSDEIEGVRKAFKAPMAGFFTYGEFGRTKNGNNEFHNSTCCWVVLKEK"
     gene            complement(2277..>3182)
                     /locus_tag="VLL95_15045"
     CDS             complement(2277..>3182)
                     /locus_tag="VLL95_15045"
                     /inference="COORDINATES: protein motif:HMM:NF021926.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FIST N-terminal domain-containing protein"
                     /protein_id="HSR40224.1"
                     /translation="DINPAWFRLVFLETAEEGDYETSRRLGSLGKQYFLNPAFVVATG
                     WQTIDGEQVIKGIEDGCGGEPTIFGGIAGDDLTLVGPVVFNGEQESQTGFVALILDEN
                     KLQVGGVATCGWKPIGIAKTVTKSIGNVVYTIDGEPAFDVVTKYLGILPENMAPISDE
                     IVNLGAYYPLQVERESAPPVMRTAQLGNLEDRSLICAGNIPQGAKVRFSLPPDFDVID
                     TVVNECLDVKASSSTQADALIMFSCISRYLSFGALTSEELEKVIHVWNAPFIGFFSYG
                     EFGRSKGGKHEFHNNTYCVMTLKER"
BASE COUNT          817 a          820 c          604 g          941 t
ORIGIN      
        1 tctgtaccca ctgctttcca tccacaagtg gcaatacctt ttacttttat attcgattca
       61 tccagcgcaa tacatacaat ggcttcatta ctttcttttc cattggtaaa tacaaatgtt
      121 tccgtaaaag cataatcgtc gcctgccgct ccgccaaata cattcacttg tttacccacc
      181 acatcttcga tgccgtgcaa tatttcttcc ccatctaccg cggcatggct aaggccaatt
      241 aaaaatgcag gaatggaata tttttcaatc gcctttttgg caatggttcc ggcaacttcc
      301 cggtaatttc tttccggata ctcttcaaaa taaatttcaa aatactcttt gttgatttca
      361 agcagtaaga tggcggcaga acccttctcc ggctcttcat ctataaactc tccattggtg
      421 gtgcaaccaa aaatggagat gcctttagca tccaacaatt ggctgatggc ttttcggtcc
      481 agcgctttgg agatgaagca aatggccagc gtaggcgcaa acccatcggc catactttca
      541 gcgagtgccg cttggatctc ctcgactgat tttccgttga ttgattttgc tttcataatt
      601 ggaatctaat tctttttaat gatcaccaga gttgcaggtg taaaatggtc tcccgcagat
      661 cacgctgatg tccgcagata ttcataatcc atttactttt ctaaaaattg actcatcgat
      721 tctggcgcaa ttgaagttta ctaatattcc caatttcttt cccgacaatt tcaggtaggt
      781 aatcacttgc ttgtgatgaa cctctgcaag attttcgact gactttatct caatgatcac
      841 caaatcttcc actagtagat caatccggta tcctacatcc atttttatct cgtcataaat
      901 caagggaagc gctacctgcg agtccacatc taaacccatt tttcgaaatt cataaatcaa
      961 tgcagcctca taagccgatt caagcaaccc tggtcctagg gtattgaaca cattaaaaat
     1021 ggcccccctg attttatatg aaacttcgtt ctctgtcata acacttctct actctgcgtt
     1081 aatctgcgcc atctgcggga gaaaaaatgt attcggcaga tgtttacttc tcttttaata
     1141 ccacccaaca acaggtgctg ttatgaaatt cgttgttgcc attttttgtt cttccgaatt
     1201 cgccataggt aaaaaagcct gccatgggtg ccttgaacgc ctttcttact ccctcaattt
     1261 catcactcac caatgggccg aactgaccaa gccggccaat gcaggaaaac ataagcaaag
     1321 catctgctcc ctgtatttct tcctggttta ctttttcagc aatgaagctc atttcttcca
     1381 ccgtttcaaa atcaggcgga agcgtcaacc ggatcttatc gccttccaga atggtgccca
     1441 atactgaaaa agatttgtcc ttccagttga acagacccac ccctcgtatc acggggtctc
     1501 ccttttcacg ggaaacactg aacatgattc cttctcttgg aaaaaaggtt tccgcctctt
     1561 cctgggtcat gctgagcccc aggtatttca ataccatttc cgctgccggt tgatggtcaa
     1621 tttcatatac ccagttgtca atggctttgg ttatggtttt ttctgttcct acgggtttta
     1681 agcctgaggc agcttcaccc cgcaccaaaa tcttgttgcc atcaaatacc agcatgatga
     1741 tacctctttt ggtagactgc tgattggtga acactacaga ctcattgaat gcaaaatcat
     1801 cgccagccct tccgccccaa acgatcacct ctttccccgt taccgactca attgctttca
     1861 acatcggttc tcccaccagt aatgcagtgg cttccgttat attgatactg gcggatagaa
     1921 ggatagaagg attttcaaat gcctgcattg cttcagccgc catctcccgg gcaagggctt
     1981 ctggttgttt atcccgataa tctccaatga gtattttgaa atacgcagga ttggtatcga
     2041 gcaacagcac aacaatttcg ccattactga aatcaccatc aataaattcc ccggaactgg
     2101 tggcgccaaa tatttgaatg cccagatcat tcaggatcct ttgtacagct actatatcgt
     2161 tattgataga gatgaagaca acggctaaag acggcttgaa cccattggcc atgctttgat
     2221 gcaatgctgc ttgaatttcg tccggagatt tccctttgat agattttgct tgcatgttac
     2281 ctttctttta atgtcatcac acagtatgtg ttattgtgaa actcatgctt gccgcctttg
     2341 gatcggccaa actctccata actaaagaag ccaatgaatg gagcattcca aacatgtatc
     2401 actttttcca gttcttcgct ggtgagtgcc ccgaacgaca ggtagcggct gatgcatgaa
     2461 aacataatga gcgcatcggc ctgggtactt gatgaagctt ttacatcaag gcattcattt
     2521 actacggtat ctattacatc aaagtctgga ggcaatgaaa agcggacttt agcgccttga
     2581 ggaatattgc ctgcacaaat gagagagcgg tcttcgaggt tgccaagttg ggcagttctc
     2641 attacgggcg gagcgctctc tctttccacc tgcagcggat aataggcacc aaggttcacg
     2701 atctcatcgg agatgggggc catgttctcc ggtaatatgc ccaggtattt ggtcaccaca
     2761 tcaaaagcgg gctcaccgtc gatggtatac acaacattgc caatgctttt tgtaacagtt
     2821 tttgcaatgc ctatcggttt ccatccacag gtggccacac cgcccacctg taacttgttt
     2881 tcatcaagta tcaaagccac aaagcctgtt tggctctctt gctccccgtt gaaaaccacg
     2941 gggccaacaa gcgtcagatc gtctcctgca atgccaccga aaattgttgg ctctccgcca
     3001 caaccatctt ctattccttt tatgacttgc tcaccgtcga tagtctgcca tccagtggcc
     3061 actacgaaag ccgggttcaa aaagtattgc tttcccaatg acccaagccg ccttgaagtt
     3121 tcataatcac cttcttcggc ggtttccaaa aacaccaacc tgaaccatgc agggtttata
     3181 tc
//
LOCUS       DATIQF010000875         2173 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_302828,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000875 DATIQF010000000
VERSION     DATIQF010000875.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2173
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302828"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..875
                     /locus_tag="VLL95_15050"
     CDS             <1..875
                     /locus_tag="VLL95_15050"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF015692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ADP-ribosylglycohydrolase family protein"
                     /protein_id="HSR40225.1"
                     /translation="AHIRTEEENFLWVSNQKAFDLMRKGMVPPATGDPANNPEHEMID
                     AQLTTEIFGLYSPARPDFAVAMARLPIQNTARGNSEWISQFYVRLFSLASLVDSRLSA
                     SEKVMWMAENAKACLPADSYASRMYAFVKQMHAAGYSWEQARDSVYERYQVNQMDSYD
                     LTARQLYCNGCFASGINFAASLISLFYGAGDLVETIKIGTLCGWDSDNPTATWGGLLG
                     FMLGKNGIEKAFNSTFSGRYNIHRTRVGFPNNGIDSFDQMALKGIWIIDRVVQEELGG
                     TVDLKQDKWYIPRK"
     gene            987..>2173
                     /locus_tag="VLL95_15055"
     CDS             987..>2173
                     /locus_tag="VLL95_15055"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HSR40226.1"
                     /translation="MSKKNRRSFLQQLGLASAAMVAGNAAVAHAAPEVFTPLFRQPPM
                     PDDQPIRMGLIGAGGMGTEDMKTALMHAGVTITAVCDLYKGRIEAAQQRWGKNLFVTN
                     DYKELLKRSDVDAVIIGTPDHWHQPISIAALQAGKHVYCEKPMLHAVSEGWDLVNAWK
                     KSGKVYQIGSQGVSSLGNEKAKELLAAGAIGELNYAEGFWARMSPEGAWQYKIPADAS
                     AQTVAWDRYEINKKHDFDPLRFFRWRNYLDYGTGMSGDLFVHLFSSLHFITNSMGPTK
                     IAAMGGLRYWKDGRDVPDVLLGMFDYPQTQAHPGFDLSLRCNFVDGTSGTTYLRLNGS
                     KGSMDVEWEKVTVRLNADAGTDDPFLKAKAAEQGTAKEERKKMLPPRETIYKAEEGYK
                     GAH"
BASE COUNT          514 a          595 c          620 g          444 t
ORIGIN      
        1 tggcgcatat caggacggag gaagagaatt tcctgtgggt ctccaaccaa aaagcattcg
       61 acctgatgcg aaaaggcatg gtgccaccgg ccaccggtga tcccgcgaac aaccccgaac
      121 atgagatgat cgacgcccaa ctgaccaccg aaatattcgg gctctattcc cctgcccgac
      181 cggattttgc cgtggccatg gcccgcctgc ccatccagaa tacggcgaga gggaacagcg
      241 aatggatcag ccagttttat gtgcgcctgt tttcattggc ttcgctggtg gacagccggt
      301 tgtcggcttc ggaaaaagtg atgtggatgg ccgaaaatgc caaagcctgt ttgccagccg
      361 attcgtatgc ctccaggatg tacgcattcg taaagcagat gcacgccgca ggctacagct
      421 gggagcaggc cagggactcg gtttatgaac ggtaccaggt gaaccagatg gacagctacg
      481 atcttaccgc ccgccagttg tattgcaatg gctgctttgc cagcggtatc aatttcgccg
      541 ccagcctcat cagcctgttt tatggggcag gcgatctcgt ggagacgatc aaaatcggga
      601 cgctttgcgg ctgggattcc gacaacccca cggccacctg gggcggcctg ctgggtttca
      661 tgctggggaa gaacggtatc gaaaaagcct tcaatagcac tttttccggt cggtataata
      721 ttcatcggac ccgggtgggt ttcccgaaca acgggatcga cagtttcgac cagatggccc
      781 tcaaagggat ctggatcatt gacagggtgg tgcaggaaga actggggggc actgtagacc
      841 tgaaacaaga caaatggtat atcccccgga aataacctgt tgaaaccgat gcctgccctt
      901 tccactgccg cccgggttga acattgaatt caggcaagtc cattccgctt ttttcctaca
      961 ttcatcggcc tataattacc tgccgtatga gtaagaaaaa ccgtcgttcg tttttgcagc
     1021 aattgggttt ggccagtgcc gctatggtag cgggcaatgc tgcggtggcc catgccgccc
     1081 ccgaagtttt cacgcccttg tttcgccagc cacccatgcc cgatgaccag cccattcgca
     1141 tgggactgat cggtgccggg ggcatgggaa ccgaagacat gaaaaccgct ttgatgcatg
     1201 ccggtgtcac catcactgcc gtatgcgatt tgtacaaagg ccgtattgaa gcggcccagc
     1261 agcgctgggg caagaacctg tttgtaacga acgattataa ggaactgctc aaacgcagcg
     1321 atgtggatgc cgttatcatt ggcacgcccg accactggca ccagcccatc agcattgccg
     1381 ccctgcaggc cggcaagcat gtgtactgcg aaaagcccat gctgcatgcg gtgagcgaag
     1441 gctgggacct ggtgaatgcc tggaagaaaa gtggcaaagt gtatcaaata ggcagccagg
     1501 gtgtgagttc gctgggcaat gaaaaagcca aagaactgct ggcggcaggg gccattgggg
     1561 aattgaacta tgccgaaggc ttctgggccc gtatgagccc ggaaggcgcc tggcagtaca
     1621 agatccccgc tgacgcttcc gcacaaaccg tggcctggga tcgttacgag atcaacaaga
     1681 aacacgattt cgacccgctg cgctttttcc gctggcgcaa ctacctcgac tatggtaccg
     1741 gcatgagcgg cgatttgttt gtgcacctgt tcagtagcct gcatttcatt accaacagca
     1801 tgggccccac caagatagcc gccatgggtg gcctgcgcta ctggaaggat ggccgcgacg
     1861 tgcctgatgt gctgctgggg atgtttgact acccgcaaac tcaggcgcac cccggtttcg
     1921 acctcagcct gcgctgcaat tttgtagatg gcaccagtgg caccacctac ctgcgtctga
     1981 atggcagcaa gggcagcatg gatgtggaat gggaaaaagt gaccgttcgc ctgaatgccg
     2041 atgccggcac cgatgaccct ttcctgaaag ccaaagccgc cgaacaaggt actgcgaaag
     2101 aagaacgcaa gaaaatgctg ccgccccggg agaccattta caaagcagag gaaggctaca
     2161 aaggcgccca cta
//
LOCUS       DATIQF010000876         5011 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_13815, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000876 DATIQF010000000
VERSION     DATIQF010000876.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5011
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13815"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2771
                     /locus_tag="VLL95_15060"
     CDS             <1..2771
                     /locus_tag="VLL95_15060"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSR40227.1"
                     /translation="CSDQSGKIWGGTATGIFRFDPKSQQFRNYSMVNKGDGPAIENII
                     CTSNGEVFAGGIPGILKYDASRDSFVNIAAGTSPAYSITADRLRKNSMVEDPSGKGMW
                     VATTEGLNYYEFQTGRFLNYKNQPNGPVFNNHFVRALAISPQGHVWVADNQTLQLIAF
                     KHGMDKPLFVLPLTGWLKNNVAATVFEDSHQHIWLAMLDGRMVKISGWQQSNPVIKEV
                     RHSREDPNSIINSFFWDALEDEDGTVWLGTLSGLAKINTSRDFYKMHLLSEKVPALQQ
                     EFAVAWLTENKADSSIWIALLHDKVIRYHPATGAIKTYELNKAVRNQRGELPGRINHV
                     AFFDQFPVVNCFNGSWILKPNGIVPFLNVPAPYTHLSFSEMAKAADGSYWLSDKKVLV
                     HWIPASNKAEAFKLKPEQGLPATGLDIHRLRFNGQGILWMALNNRYMAYFHHQSGTIR
                     PVPFRLPEDVLKTSYYYNYDIDESGNIWLPFSGFGLVKIGADGQQQTWWSDSSGMRNS
                     IVAAIAGMQGQVWCFSKNKITVMLSKTNSMYQYELPYGNHNFNYTVFTHRLQSGNLLA
                     NIGGDLLELMPERIIGPPNGPRAMITAVQIGEKERQLFGDSLLRLQPEENFLTFRFGS
                     LTDQQLFPYQLQYKLENLDANWKDASQSGTAVYTQLAPGDYVFKVALVGKNGEWRSAE
                     QKLYIHLSTPFYKSNWFRLLVILLVGGILYYWYAERMTQQKKLFATESKSQLLAKEKT
                     QVQYENLKQHLNPHFLFNSLTTLSSLIEINPKMAGSFLRSLSKTYRYILQSKDKETVA
                     LADELAFVQTFITLQQTRFEQGLKVVNNVPAEYLNRHIVPVTLQNLVENAIKHNIIDD
                     ENVLRITMEVENDYLVVANKMQLKKFVETSNKQGLDNLQSLYTYLTDKPLTYGVNEDY
                     FIVKIPLL"
     gene            2768..3538
                     /locus_tag="VLL95_15065"
     CDS             2768..3538
                     /locus_tag="VLL95_15065"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSR40228.1"
                     /translation="MKAVIVEDESLIARQLAAMIKSLDPEIEIAEILPSLKVARRWLS
                     ENAEPDLMFMDIQLSDGVSFELFESFQLTCPVIFITAFDEYAMRAFKVNGIDYLLKPV
                     EEDDLKKAIDKYRRLTKPSGELPPTDWSELLSALHRQSSKPLYKEKFIIHQRNHWVPV
                     NTGDIACFLRENLNYIYTFDGNKYIMDTSTLDDIEEVLDPRQFYRANRQCIVNIDAIQ
                     QVKSHDNAKLTVFLKAPNKMEQDISRDKAPVFRKWFDR"
     gene            3726..4562
                     /locus_tag="VLL95_15070"
     CDS             3726..4562
                     /locus_tag="VLL95_15070"
                     /inference="COORDINATES: protein motif:HMM:NF012604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40229.1"
                     /translation="MKKIATGFLAFITFTTHTYAQNVGIGTTNPTSKLMVYSNDPNGK
                     GIIQTSGTAEIGFYTTGGTAIVQTYTPHPLHFATGNSSPSMTLNGNNFGIGTTTPTAR
                     LDVNGSFRLRSADATNGAILKSADANGNVVWQRPYAFRVTGLANGENQSITLYQWNKV
                     FFNTTASHNIGLSYQPLAAQFVAPVNGIYHFNVHLKVPGLSYQTGLALNIIRSGNEFT
                     AASDFKGDNRDSHDATTKTVQVTTDIQLFAGDIVYVLYWGFVGIEHGTGTWFSGHLIT
                     QL"
     gene            complement(4744..>5011)
                     /locus_tag="VLL95_15075"
     CDS             complement(4744..>5011)
                     /locus_tag="VLL95_15075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40230.1"
                     /translation="AEQKIATFIFVSEIVSNNRVNRLAGLPFKSSSFRGSENDLRCCR
                     RYGNPQFPKVSAAIYFAHDYRQVFDKRKPVNEAAHGGRTYPFVG"
BASE COUNT         1401 a         1257 c         1169 g         1184 t
ORIGIN      
        1 tgtgcagcga tcaatcgggt aagatctggg gaggcactgc caccggcatc tttcgtttcg
       61 atcccaaaag ccagcagttc aggaattact caatggtaaa caaaggcgat ggccccgcca
      121 tagagaacat catttgtacc agcaacggcg aagtgtttgc cggcggcatt cccggcatcc
      181 tcaagtatga tgcctcacgt gacagttttg tgaacatcgc tgccggaacc agcccggctt
      241 acagcatcac ggccgacagg cttcgcaaaa acagtatggt ggaagatcct tccgggaagg
      301 gcatgtgggt agccaccact gaaggattga actattatga atttcaaacc ggacgattcc
      361 tgaactacaa gaatcagccc aatggccctg tgttcaacaa ccattttgtg agggccctgg
      421 ccatttcgcc gcaggggcac gtgtgggtgg cagacaatca aaccctgcaa ctcatcgcct
      481 ttaagcatgg catggataaa cccttgtttg tgctgccact gacgggctgg ctcaaaaaca
      541 atgttgccgc tactgtgttc gaggacagcc atcaacacat ttggttggcc atgctcgatg
      601 gccggatggt gaaaatatcc ggctggcagc aatccaatcc agtgatcaaa gaggtaaggc
      661 attcccgcga agacccgaac tctatcatca acagcttctt ttgggatgcg ctggaagatg
      721 aggacggaac agtttggctg ggcactttgt cggggctggc caaaataaat accagccgcg
      781 atttttataa aatgcacctg ctgtccgaaa aagtgccggc gctgcagcag gagtttgcag
      841 tggcatggct caccgaaaac aaagcggaca gcagcatttg gattgccctg ttgcacgaca
      901 aagtaatccg gtatcacccc gcaacagggg ccataaaaac gtatgaactg aataaggcgg
      961 ttcgcaacca acgtggtgag ttgccgggac gcatcaacca cgttgccttt tttgatcagt
     1021 ttccggttgt caattgcttt aatggaagct ggatattgaa acccaatggc atcgtgccat
     1081 ttttgaatgt tcctgcccca tacacacacc tcagtttctc cgaaatggca aaagcggcag
     1141 atggcagcta ctggttatcc gacaaaaaag tgctggtaca ctggatacct gcatccaaca
     1201 aggccgaagc tttcaaactg aagccagaac agggacttcc agccacaggc ctggatattc
     1261 acagattacg attcaatggg cagggcattt tatggatggc actcaacaac aggtacatgg
     1321 cctattttca ccatcagtca ggtaccattc gccctgttcc cttccgattg ccggaagatg
     1381 tattgaaaac ttcctattac tacaattatg atatagatga atccggcaat atttggttgc
     1441 cattcagcgg ctttggattg gtaaaaattg gtgccgacgg gcagcagcaa acctggtggt
     1501 ccgattcgtc aggtatgaga aacagcatag tggcagccat tgccggcatg cagggacagg
     1561 tttggtgctt cagcaaaaac aaaatcacgg tgatgctttc caaaacgaac agcatgtacc
     1621 agtatgaact tccttacggc aatcacaact tcaactacac cgtattcacc catcggctgc
     1681 aaagtggcaa cctgttggcc aatataggcg gtgacctgct ggaattgatg cctgaacgga
     1741 tcattggccc gcccaatggg ccccgtgcca tgatcactgc tgtgcaaatt ggtgaaaaag
     1801 aaaggcagtt gtttggcgat tcgctgctcc ggctgcaacc cgaggaaaat tttctcacct
     1861 ttcggtttgg ctcactcacc gatcagcaac tgtttcctta tcagcttcaa tacaagctgg
     1921 aaaacctgga tgcaaactgg aaagatgctt cgcaatccgg taccgcagtt tacacacaat
     1981 tggcccccgg cgattatgta ttcaaagtgg cattggttgg caaaaacggc gaatggcggt
     2041 cggcggagca gaaactctac attcacttaa gcactccttt ctataagtcc aactggttcc
     2101 gtctcctggt gatcctgttg gtgggcggca tactttacta ctggtatgcc gaacgcatga
     2161 cccaacaaaa gaagttgttt gccacggaga gcaaatcgca gctgctggcc aaagaaaaaa
     2221 cacaggtgca atacgaaaac ctgaagcagc acctcaaccc gcatttcctt ttcaattcgc
     2281 ttactacact aagcagcctg attgaaatca acccgaaaat ggccggcagc tttttacgga
     2341 gcctgagcaa aacctaccgc tacattttgc agagcaaaga caaagaaacc gtggcgctgg
     2401 ctgatgaact ggcattcgtt caaaccttta tcacactgca gcaaacccgt tttgagcagg
     2461 ggttgaaggt agtcaacaac gtgccggcgg agtatctcaa tcgtcacata gtaccggtga
     2521 cattgcaaaa cctggttgaa aacgccatta aacacaacat cattgatgat gagaatgtgt
     2581 tgcgcatcac catggaagtg gagaatgatt acctggtagt ggccaacaaa atgcaactga
     2641 aaaaattcgt tgaaaccagc aacaagcagg ggctcgacaa ccttcaatcg ttgtatacct
     2701 acctcaccga taagccgttg acatacgggg tgaatgaaga ttattttatc gtaaaaattc
     2761 ctttgttatg aaagccgtaa ttgtggaaga tgaaagcctg attgcacggc aactggcagc
     2821 catgatcaaa tcactggatc ctgagattga aattgctgaa atattgccca gcctgaaagt
     2881 ggcccggcgc tggctgagcg aaaatgcaga gcccgacctc atgttcatgg acatacagct
     2941 gagcgatggg gtgagttttg aattgtttga gtctttccag ctgacctgcc cggtcatatt
     3001 cattaccgcc ttcgatgaat atgccatgcg ggcctttaag gtaaatggca tcgactacct
     3061 gctgaagcca gtggaagagg atgacctgaa aaaagccatt gacaaatacc ggcgcctgac
     3121 aaagccttcc ggcgagctgc cccctaccga ttggagtgaa ctactttcag cgctgcaccg
     3181 gcaaagcagc aaacccttat acaaagagaa attcattatt caccagcgca accactgggt
     3241 acctgtaaac accggtgaca tcgcctgctt tctccgcgaa aacctgaact acatctacac
     3301 attcgatgga aacaagtaca tcatggatac ttccacgctg gacgatattg aggaagtgct
     3361 cgatccccgc cagttttaca gggccaaccg gcaatgcatc gtgaacattg atgctatcca
     3421 gcaggtaaaa tcacacgaca atgctaagct gacagtattt ctgaaagccc ccaataaaat
     3481 ggagcaggat atcagccgcg ataaagcgcc tgtattcagg aaatggttcg acaggtgagg
     3541 cactgattga attgatatgc ttaactgctg taattccgaa aaggattacg gcagtttttt
     3601 tttgttgcat cctctggtca atggccactt cttacgactc atgcattggt ttgccccatt
     3661 caccttcaaa aaattgcagg cgccaaagga tgaaaacaat tttgtatcaa cacaaccaaa
     3721 agactatgaa aaaaatagca actggctttt tggcattcat aactttcact acacacacct
     3781 atgctcaaaa tgtaggtatc ggcaccacta accctacctc caaactaatg gtgtatagta
     3841 atgaccccaa tggcaagggc atcattcaaa ccagcggcac cgcagagata ggattctata
     3901 ccactggcgg tactgcaatt gtgcaaacct atactcctca cccgctccat tttgccacgg
     3961 gcaatagctc gccaagcatg acactcaacg ggaacaactt cggcataggc accaccaccc
     4021 ccacggcacg ccttgacgtg aatggtagct tcaggctgcg gagtgctgat gccaccaacg
     4081 gggcgattct gaaaagtgcc gatgcaaacg gcaatgtagt ttggcaacga ccttatgcct
     4141 ttagggtaac agggctggca aatggcgaaa accaaagcat cactctctac caatggaata
     4201 aggtattctt taataccaca gccagtcaca acattggcct gagctaccag cccctggctg
     4261 cacaatttgt agcaccggta aatggcattt atcacttcaa tgttcatttg aaagtgccag
     4321 gattaagcta ccaaaccggc cttgccttaa atattatcag gagtggaaac gaattcactg
     4381 cagcttctga tttcaaaggc gacaaccgcg acagccacga tgcaaccaca aaaacagtgc
     4441 aggtaaccac cgacattcaa ttgtttgcag gcgacattgt ttacgtgctc tactggggtt
     4501 tcgttggaat tgaacatggc actggtacct ggttcagcgg gcatcttatc acacaactct
     4561 gacaacccac atcactcatt cacttcatca ccctcattct taaacccggc taagcacttc
     4621 gcaaaaggca gtgcttttgt cgtgttcagg gcctgtttgt ccaattgctt tcgctggctt
     4681 ggaaatagct cttcatttgg ctttttgcct gaaaccattg caagcaattg accgggaaga
     4741 gtgttaccca acgaatggat aagtgcgccc tccatgggcc gcttcattca ctggcttgcg
     4801 cttgtcaaaa acctgtcggt agtcatgtgc aaaataaatg gcggctgata cttttggaaa
     4861 ttggggattt ccatacctgc ggcagcagcg caaatcgttc tcgcttcctc taaacgatga
     4921 cgatttgaat ggcaagccag caaggcgatt gacccgatta ttcgaaacga tttcagaaac
     4981 gaatatgaaa gttgcgattt tctgttcggc t
//
LOCUS       DATIQF010000877         3761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_165875,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000877 DATIQF010000000
VERSION     DATIQF010000877.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3761
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165875"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1344)
                     /locus_tag="VLL95_15080"
     CDS             complement(<1..1344)
                     /locus_tag="VLL95_15080"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSR40231.1"
                     /translation="MNRKLTPLLLGLLAGIFCFAMPAIAQNKTVRGRVSDSQGGAAVQ
                     GATVLVKGSTTGTQTGADGSYTLSVPAGATLVFSAVGYTSQEVAVGDKTEIDVALVLS
                     AAKNLNEVVVVGYGTRKAKDLTGSVANVTTKDFNKGQIASPEQLLEGRTPGVLVTQSS
                     GEPGAAVTVNIRGAATISGRQEPLYVVDGVPLVQGGTLGSASGVEGSTTPRNPLIFLN
                     PNDIESMTVLKDASAAAIYGSRGANGVILITTKSGRGGKKGSLTFNAGTSMAETARRY
                     DMLSPTEFLQQARLANIQGGASPADAEAAVKLIDGGANTDWQDQIFRQAWSQNYNLSY
                     GMNTKSTIMRLSGGYDNQQGIVKNSSLQRLAGRANITQMLFEDKLKIDANLTYSNTKN
                     EYPPLSNNAGYQGSLLGAALQFNPTNPIKNADGSYFQPGDQRNPVQMLDYFTDKDN"
     gene            1709..2713
                     /locus_tag="VLL95_15085"
     CDS             1709..2713
                     /locus_tag="VLL95_15085"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HSR40232.1"
                     /translation="MSTGSSATLKKISEHLNVSISTVSRALKDHPDVSPETKKRVKEL
                     ALLLDYEPNAFAVNLRKKHSNLFAVIVPEINSFFYHSFIQAVEEESRKMGYTLMILQS
                     MNNPETEEQNLRLCRYNHVAGVLVALTSQTKAMEPFRKLEAQGIPVVFFDKVPADTLF
                     NKVCIADYECGKIAAEKMHEGTYQKILAIMGSPHLSITERREAGLRDYCNSQSKKMQL
                     EIVYADDSKGAQQHIVDYFSKPGQPRTAVFSMSDEIMCGVMKGLHEKKLQLPGDAGLL
                     TISNGFFPSLFEPEISFVRTSGYDLGKLTFERLKEIMDGKKFVRENFLSATYHPGGSL
                     "
     gene            2915..>3761
                     /locus_tag="VLL95_15090"
     CDS             2915..>3761
                     /locus_tag="VLL95_15090"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF011456.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HSR40233.1"
                     /translation="MKVAVVGATGLVGTKMLQVLEERNFPVSELIPVASEKSVGKEVI
                     FKGKPYKVVSVADAIAAKPAVALFSAGGSTSLATAPLFAEAGITVIDNSSAWRMDPTK
                     KLVVPEVNGDVVTADDKIIANPNCSTIQMVLVLKPLHDKYRIKRVVVSTYQSVTGTGV
                     KAVNQLMNERKGVEGEMAYKYPIDLNVIPQIDVFLDNGYTKEEMKMVNETKKIMGDDS
                     IRVTATTVRIPVMGGHSESVNIEFENDFDLAEVRQLLASSPGVVVEDDPANQVYPMPL
                     NAHDKD"
BASE COUNT          985 a          905 c          963 g          908 t
ORIGIN      
        1 attgtcctta tcagtaaagt aatccagcat ctgaacgggg ttacgctgat cgccgggctg
       61 gaaataagat ccatcagcgt tcttgatggg gttggtgggg ttgaactgca aagcagcacc
      121 cagcaagcta ccctggtaac ctgcgttgtt cgacaacgga ggatattcgt tcttggtatt
      181 ggaataagtc aggttggcat caattttcaa cttgtcttca aacagcatct gggtgatgtt
      241 ggcacgtccg gccaggcgct gcagtgagct gttcttcaca atgccctgct ggttgtcgta
      301 gccaccgctc aggcgcataa tggttgattt cgtattcatg ccatagctca ggttgtagtt
      361 ctgagaccag gcctggcgga aaatctgatc ctgccagtcg gtattggcac cgccgtcaat
      421 cagttttacc gcggcttcag catcagctgg gctggcgcca ccctgaatgt tggcgagcct
      481 tgcttgttgc agaaattctg tcgggctcag catatcatag cggcgggcag tttcagccat
      541 gctggtacca gcgttgaagg tgagtgaacc cttcttgccg ccacgaccac ttttggtagt
      601 gatgaggatt acgccgttgg caccacgaga accgtagatg gcggctgcag aggcatcctt
      661 cagaacagtc atgctttcaa tgtcgttggg gttcaggaag atcagtgggt tcctgggggt
      721 agtgctacct tccacaccac tggctgagcc caatgtaccg ccttgtacca ggggtacacc
      781 atctaccacg tagaggggct cctggcgtcc gctgatggta gctgcaccgc gaatattcac
      841 ggtaacggct gcaccgggtt cgcctgaaga ctgggtgacc aatacaccgg gggtgcggcc
      901 ttccagcagt tgctcaggag aagcgatctg gcctttgtta aagtctttgg ttgtcacgtt
      961 ggccaccgaa ccggtcaggt ctttggcctt gcgggtacca taacctacta ccaccacctc
     1021 gttcaggttt ttggcagcag acagcaccag cgctacgtcg atttcggttt tgtcgccaac
     1081 ggctacttcc tgcgaagtgt agccaacggc gctaaaaacg agtgtggcac ctgcaggaac
     1141 cgacagcgtg taagagccat ccgcacctgt ttgtgtacct gtggttgaac cttttacgag
     1201 tacggtagct ccctgcacag cggcaccgcc ctgtgagtca gataccctac ccctaacagt
     1261 cttgttttgc gcaattgccg gcattgcaaa gcaaaagatt ccggcaagca gccccagcag
     1321 caggggcgtc agttttctgt tcataagcat gaaattgatg tttggtcgat ttatttgtct
     1381 taaataaaat ccaggactgg tgggtgtgtt ttagcctttt ctgtcgactt tgcgcatact
     1441 tcttccgcac caaaaaattc cctttgtagg ctccacatag caggcaattt tctccgtttt
     1501 ggcaatagtc ggcttcagca aattatttta aaaataggga acttgccaac gattcgaaaa
     1561 aaaatatctt atccacttct gcaaacgttt gtggtaatga ttgcgaaaat cattgcagtg
     1621 taaaaaaaat gcattcatac ttttagggcg ccataatcca aaatcgcggc ggtccacctg
     1681 cttgtcgatt gcatatcaat acattacaat gagtaccgga agtagtgcca ccctaaagaa
     1741 aatttcagag cacctgaatg tttccatttc taccgtcagc cgggcgctga aggatcatcc
     1801 cgatgtttcg ccggaaacca agaaaagggt gaaggaactg gcacttttgc tggattacga
     1861 accgaacgcc tttgccgtca atctgcgcaa aaagcacagc aacctgtttg ccgtgatcgt
     1921 tcccgagatc aatagcttct tctaccactc tttcatccag gcggtggagg aagaaagccg
     1981 gaagatggga tatacgctca tgatcctgca aagcatgaac aaccctgaaa cggaggagca
     2041 aaacctgagg ctttgccgtt acaatcatgt ggctggggtg ttggtggcgc tcaccagtca
     2101 aaccaaagcg atggagccat ttaggaaact ggaagcgcag ggcatccccg tagtgttttt
     2161 cgacaaagtg ccagcggata ccctattcaa caaagtatgt attgccgatt acgagtgtgg
     2221 caaaatagcc gcggaaaaaa tgcatgaagg aacttaccag aaaatcctgg ccattatggg
     2281 aagcccgcat ctttctatta ccgaacgcag ggaggcggga cttcgtgatt attgcaatag
     2341 ccagtcaaaa aaaatgcagt tggaaatagt atatgccgac gacagcaaag gggcgcaaca
     2401 gcatattgtt gactactttt caaaacctgg acaacctcgt acggccgtat tttccatgag
     2461 tgatgaaatc atgtgtgggg tcatgaaagg cttgcatgaa aaaaaactgc agttgccagg
     2521 agatgcaggc ctgcttacca tcagcaacgg attctttcct tcactgtttg agccagagat
     2581 atcctttgtg cgcaccagtg ggtacgacct gggcaaactc acattcgaaa gattaaaaga
     2641 gatcatggat ggcaaaaagt ttgtgagaga gaattttctt tccgccacct accatccggg
     2701 aggctcgctc taaaaaaaag tggtatcaat gagatttttt ctttcttttg cgccaccaat
     2761 gaacaattac agcaaacata tcaaacacat taccaaaccg actctgtccg gaaggtaacg
     2821 cctgtttgtt tgtttcaaaa taacgatagc agccttccgg aataccggga ggctgttttc
     2881 ataaccatcg aaaacaaaaa caaaaagcaa agcaatgaaa gtagccgttg tgggtgccac
     2941 cggcctggta ggcaccaaaa tgttgcaggt actggaagaa cgcaacttcc ccgtttcaga
     3001 actcattccc gtggccagtg aaaaatcagt gggaaaagaa gtgattttta aaggtaaacc
     3061 ctacaaggtg gtaagtgtgg ccgatgccat tgccgccaaa cctgcggtgg ctttgttttc
     3121 tgccgggggc agcacctcct tggccactgc gcctttgttt gccgaggccg gcattaccgt
     3181 aatcgacaat tcatcggcct ggcgcatgga ccccaccaaa aagctggtag tacccgaggt
     3241 gaatggcgat gtggtaacag ccgatgataa gatcattgcc aaccccaatt gctctaccat
     3301 tcaaatggtg ctggtgctga agccgctgca cgacaaatac cgtatcaaaa gggtggtggt
     3361 gagcacctac cagagcgtga ccggaaccgg cgtgaaagcg gtaaaccagc tgatgaatga
     3421 acgcaaaggt gtagagggcg aaatggccta taagtaccct atcgacttga atgtaattcc
     3481 acagattgat gttttcctcg acaatggtta taccaaagag gaaatgaaaa tggtgaatga
     3541 gaccaagaaa atcatgggag acgacagcat tcgcgttaca gccacaacgg tgcggatacc
     3601 cgtaatgggt ggccacagcg aaagcgtgaa catcgaattt gagaatgatt ttgacctggc
     3661 tgaagtgcga cagctactgg cgtcatcgcc cggtgttgtg gtggaagatg atcctgccaa
     3721 ccaggtctat cccatgccgc tgaatgcgca tgacaaggat g
//
LOCUS       DATIQF010000878         3357 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_242047,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000878 DATIQF010000000
VERSION     DATIQF010000878.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3357
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242047"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..439
                     /locus_tag="VLL95_15095"
     CDS             <1..439
                     /locus_tag="VLL95_15095"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HSR40234.1"
                     /translation="LPQFSTDGNNWQSLDKIPITNIHQRSYQTLHSPAPAGTLFYRIQ
                     QADVDGKIIYSSVVMLNALGTQTGVHVYPNPVRQNGNVNISGAGISPSNIQLRDANGR
                     LLRSATMSTGMYTLSTTGLPAGVYYVQVQSAQGLSTRKITIVQ"
     gene            complement(426..1040)
                     /locus_tag="VLL95_15100"
     CDS             complement(426..1040)
                     /locus_tag="VLL95_15100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40235.1"
                     /translation="MKNASWLIGAVVVLAGIAWFNANRKSNTESDTTQVSNPAFPFGT
                     PPANSATPAPASNAAGALAPAGRVNPAHGQPGHRCDLAVGAPLPDAGAVATQPAPANT
                     GISVAEAAQRLAATQPATPKGMNPPHGQPGHRCDIPVGAPLNSKPATPNNAAAANLNN
                     IVVAKGKNPPHGQPGHLCELPVGADLDSAKAAKAAKAKTDSTAQ"
     gene            complement(1096..1473)
                     /locus_tag="VLL95_15105"
     CDS             complement(1096..1473)
                     /locus_tag="VLL95_15105"
                     /inference="COORDINATES: protein motif:HMM:NF024759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HSR40236.1"
                     /translation="MTENEISYQIRGAIFKVYNALGPGLLESAYEAALIYELEQLNLR
                     VRNQVPLPMVYETIRVDAGYRVDLIVEDAVLIEVKSVENLQEVHHKQVITYLKLSGIK
                     LGILVNFNSDDISKGIFRKVNGL"
     gene            complement(1654..2163)
                     /locus_tag="VLL95_15110"
     CDS             complement(1654..2163)
                     /locus_tag="VLL95_15110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40237.1"
                     /translation="MRFSALILGILIFSGFKSMGQSQAFDKLIFNAPPAEWSKQETLD
                     KVTYSNYNVKGAEPATLTIFKSMPVTGKADQQLPQYWRHYLQLSDTAAAPRPKKQYTN
                     DGDPMVIASGEAAGPEGKGYYVLAVYHTETWAQPLLIFTPSAKAYRLQLAEWMDRLQT
                     VRLAKAGKK"
     gene            complement(2274..>3357)
                     /locus_tag="VLL95_15115"
     CDS             complement(2274..>3357)
                     /locus_tag="VLL95_15115"
                     /inference="COORDINATES: protein motif:HMM:NF012882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40238.1"
                     /translation="EGQNRTTVNELVAGDIGATMKLRNTHVNNTLHEKGKNIELLPIE
                     FPTSNLTVAVESIRKGEEEKLSQAMHTLREEDATILVEVSPELKQTLLHCQGELHLQV
                     IKWKLEHIHKVDVAFHKPRIPYRETIRKSAEAMYRHKKQSGGAGQFGEVHLRIEPWYE
                     GMPDPAGLNVRGREEVPLDWGGKLVYYNCIVGGSIDARFIPSILKGVMEKMVEGPLTG
                     SYVRDVRVSVFDGKMHPVDSNDISFKIAGTKAFKDAFSHADPQILEPIYTVEVLCPSD
                     LTGAVMGDLQTRRAFVEGIDTEGHFQKIVAKVPLAEMHDYSSSLRSITQGRAKFRLSF
                     YEYANVPFEIQKKLSEDYQKVAKDEE"
BASE COUNT          729 a          868 c          905 g          855 t
ORIGIN      
        1 cctgccgcag ttcagcaccg atggcaacaa ctggcagtcg ctggataaaa tacccatcac
       61 caatattcac cagcgcagct accaaacgct gcacagccct gcgccggcag gaacgctgtt
      121 ttaccgcata cagcaagccg atgtggatgg caagatcatt tacagttcgg tggtgatgct
      181 gaacgccttg ggtacacaaa cgggagtcca cgtttatccc aaccccgtaa ggcagaatgg
      241 aaatgtgaat atcagcggag ccggtatttc gccttccaac attcaacttc gggatgccaa
      301 tggcaggttg ctccgcagcg ccactatgtc aacgggaatg tatacactgt caaccaccgg
      361 gttgccggca ggcgtgtatt atgtacaggt gcaatcggca caggggctca gcacccgcaa
      421 aatcactatt gtgcagtaga atctgttttg gctttggctg ctttggccgc cttggcgctg
      481 tcgaggtcgg cgccaacggg cagttcgcat aaatgcccag gctggccgtg cggtggattc
      541 tttcctttgg ctaccacaat attattaagg ttggcagcgg ctgcgttatt gggggtggcc
      601 ggcttgctgt tgagcggggc gcctaccggt atatcgcagc ggtggccggg ctggccatgt
      661 ggcgggttca tgcctttggg cgtggcgggt tgcgtggccg ccaggcgctg ggccgcttcg
      721 gctacgctga tgcccgtgtt ggcgggggca ggctgggtgg caacggcgcc ggcatcagga
      781 aggggggctc ccacagcgag gtcgcagcgg tgaccgggct ggccatgagc agggttgacc
      841 ctgccggcag gggccagtgc accagcagca ttgctggcag gcgcaggcgt agcgctgttg
      901 gcaggtggcg tgccaaaggg aaaggccggg ttgctcacct gggtggtgtc cgattccgta
      961 ttggatttac gattggcatt gaaccaggca atgcccgcca aaacaacgac ggccccaatc
     1021 agccaggatg cgtttttcat accattcagt tttttagtga ttcgtgagca accaaagaaa
     1081 atctgcggga attgattaaa gcccgtttac cttcctgaaa atgccctttg atatatcatc
     1141 agaattgaaa ttaaccagta tcccgagttt gatcccggaa agtttcagat aggtgatgac
     1201 ctgtttgtga tgtacctcct gaagattttc tactgatttg acttcaatga gcacggcatc
     1261 ctccacaatt aggtccaccc tataaccagc atccaccctg atggtttcat aaaccatagg
     1321 taaaggtacc tgattcctga cgcgaagatt caactgctcc agttcataaa tcaatgcggc
     1381 ttcatatgct gattcaagta gcccgggccc caatgcatta tacactttga aaatggcacc
     1441 cctgatctga taggatattt cattttcggt catgtcctaa aattatgcag ttgaaccaga
     1501 atttcccgca gatagcgcag atctgtcccg cagatggcgc tgattgaaga cagttctgtc
     1561 tgcggaatct gcgtaaaaaa atctgcgaga tcagcgggaa aaaaatcgaa attttccgca
     1621 gtcgcatttg ctcttaaaca aaaatgcctg ctattatttt tttccggcct ttgccagccg
     1681 tacggtttga aggcggtcca tccattcggc cagttgcagc cggtaggcct tggccgatgg
     1741 ggtgaagatg agcagtggct gcgcccaggt ttcggtatgg taaacagcca gcacatagta
     1801 gcccttccct tcggggcctg cagcttctcc cgacgctatc accatcggat cgccgtcgtt
     1861 ggtatactgc ttcttgggac gcggtgccgc agcggtatca ctcagttgca aataatgcct
     1921 ccagtactgc ggcagttgct gatctgcttt gccggtcact ggcatcgact tgaaaatggt
     1981 cagcgtggcg ggctcagccc cttttacgtt gtaattggag tatgtcactt tgtccagcgt
     2041 ttcctgcttc gaccattctg ccggaggagc attaaagatc agtttgtcga aagcctgtga
     2101 ctgccccatg cttttgaagc cggaaaaaat aaggatgccc aaaatgagtg ctgaaaaacg
     2161 catggttgaa attaggcagt tcccgcagca agaatttcct aaatgtgtga aggcgtcaaa
     2221 aaaaaaccgg ccccctgagg agccggttca ccacaccatt gtattaaaat atactattct
     2281 tcgtctttgg ccactttctg gtagtcttca ctcagtttct tctgaatttc gaatggcaca
     2341 ttggcgtatt cgtaaaaact aagtctgaat ttggcgcggc cctgtgtgat gctgcgcaat
     2401 gaggaagagt aatcgtgcat ttcggccagc ggcactttgg ccactatttt ctggaaatgg
     2461 ccttcggtat cgatgccttc cacaaaagcc cggcgggttt gcaggtcgcc catcacggcg
     2521 ccggtaaggt cggaaggaca aagcacttcc acggtgtaaa tgggttccag tatttgcgga
     2581 tcggcatgcg agaaggcgtc cttgaatgcc ttggtaccag caattttgaa agaaatatca
     2641 ttgctgtcta ccgggtgcat tttgccatcg aaaacactca cccttacatc gcgaacatag
     2701 gagccggtca agggaccttc caccattttt tccatcaccc ctttcaaaat gctgggtatg
     2761 aagcgggcat cgatagagcc gcccacgatg cagttgtaat acaccagttt tccgccccaa
     2821 tccagtggca cttcttcacg gcctcttacg ttcaggccgg cgggatcggg catgccttcg
     2881 taccagggct caatgcgcag gtgcacttca ccaaactgtc cggcgccacc gctttgtttt
     2941 ttgtggcggt acatggcttc ggcactcttg cggatggttt cgcggtaggg gatgcggggt
     3001 ttgtggaaag ccacatccac tttgtgtatg tgttccagtt tccacttgat cacctgcagg
     3061 tgcagttcac cctggcaatg cagcaaagtt tgtttcagct cgggtgatac ttccaccagg
     3121 atggtggcat cttcttcccg cagggtatgc attgcctgcg agagtttttc ttcttcgccc
     3181 tttcggatgc tttccaccgc tacagtcagg ttgctggtcg ggaattcgat aggcagcagt
     3241 tcgatgttct ttcctttttc gtgcagcgtg ttgttcacgt gggtattgcg cagtttcatg
     3301 gtggcgccaa tatcacccgc caccagttca ttcacggtag tgcggttctg gccttcc
//
LOCUS       DATIQF010000879         1619 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_74650, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000879 DATIQF010000000
VERSION     DATIQF010000879.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1619
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74650"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..516
                     /locus_tag="VLL95_15120"
     CDS             <1..516
                     /locus_tag="VLL95_15120"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSR40239.1"
                     /translation="VSTTNLQPLINNIQSTFKSMAAGKPFSYRFLDESFDEMYKAEQR
                     VGNLALAFSIIAICIACLGLFGLATYMAQQRVKEIGVRKVLGATVLNIVGMLSSDFIK
                     LVLLASVIAIPVAWYAMNKWLQDFAYRTSIAWWIFPLAMILGMLIALLSVSFKAISAA
                     NTNPVKSLRTE"
     gene            527..>1619
                     /locus_tag="VLL95_15125"
     CDS             527..>1619
                     /locus_tag="VLL95_15125"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR40240.1"
                     /translation="MIRNFFTIAWRNLMRNKIYAFINIAGLSLGLTCAILIILYTKDE
                     VSYDKFHPKGDRIYRIVNKHFNPDGSSERGGGSTSYFHGPTFASQIPEMAAVVRIQAD
                     IKDVKKGGEVIREEVMNVDSNFLEAFNFPLLHGNVSTALDDPSNIVISEDLAEKYFAT
                     TDAVGKTLEFKTREGFKTYTVSAVSKKCPQNSSIKFNVLLPMEVPKDFDMNDRMNWFN
                     FFLNTFVVLAPGASQAVVEKKMHQVYALDAKDAVAELARNFDEKGTMKYYLQPFADIH
                     LNPDFGTGNGLIDGSNPWYSYVLIGIAVFILLIACINFINLTIARSLKRAREIGVRKV
                     VGSNRQQLMLQFIWESFLLCLLAFGMALVM"
BASE COUNT          412 a          401 c          395 g          411 t
ORIGIN      
        1 gtgtcgacta ccaatctgca accgctgatc aacaacattc aatccacctt taaatcgatg
       61 gcagcgggaa aaccattcag ctatcggttc ctcgacgaat cctttgatga aatgtacaaa
      121 gccgagcagc gggtgggaaa cctggcgctg gcattcagca tcattgccat ttgcatcgcc
      181 tgcctggggt tgtttggttt ggctacttac atggcacaac agcgggtaaa ggaaattggc
      241 gtgagaaaag tattgggggc caccgtgctg aatattgttg gcatgctttc ttccgatttt
      301 ataaagttgg ttttactggc ttcggtgatt gctatccccg tggcctggta tgccatgaac
      361 aaatggctgc aggattttgc ttaccgcacc agtattgcgt ggtggatctt tccactggcc
      421 atgatactgg gcatgctgat cgcattgctg tcggttagtt tcaaagcgat atcggcggcc
      481 aataccaatc ccgtgaaaag cttaagaaca gaataaaaaa accggcatga tccgcaactt
      541 cttcaccatc gcctggcgca acctgatgcg caacaagatt tacgctttca tcaacattgc
      601 aggattgagc ctgggcctta cctgtgccat tctgattatt ctgtacacaa aagatgaggt
      661 gagctacgac aagtttcatc ccaagggcga tcgcatctat cgcattgtga acaaacattt
      721 caacccggat ggaagcagtg aacgtggagg gggttctacc agttatttcc acggccccac
      781 tttcgccagc caaatacccg aaatggcagc tgtggtgcgc atccaagccg acatcaagga
      841 tgtgaaaaag ggcggtgagg taatacggga agaagtaatg aatgttgact ccaacttttt
      901 agaagcattc aactttccat tgctgcacgg caatgtttct acggcactgg atgatccatc
      961 taatattgtg atctctgaag accttgcgga gaaatatttc gccaccactg acgcagttgg
     1021 caaaaccctt gaattcaaaa ccagggaggg tttcaaaaca tacacggtca gcgccgtttc
     1081 caaaaaatgc ccgcagaact cttccatcaa gttcaatgtg ctgctgccta tggaagtgcc
     1141 caaagacttc gatatgaacg accgcatgaa ctggttcaac ttcttcctca acacatttgt
     1201 ggtattggct ccgggtgcca gccaggcagt tgtcgagaaa aagatgcacc aggtgtacgc
     1261 tttggatgca aaggatgccg tggctgaact ggccaggaac tttgatgaaa agggaacgat
     1321 gaagtattac ctgcagcctt tcgccgacat tcatctcaac cccgactttg gcaccggcaa
     1381 cgggttgatt gacggcagca atccctggta ttcttacgtg ctcattggca tcgccgtttt
     1441 cattttgctg atcgcctgca tcaatttcat caacctcacc atcgcccgat cgctgaagag
     1501 agcccgtgaa attggcgttc gcaaggtagt aggcagcaac cgccaacaac tgatgctgca
     1561 attcatttgg gaatccttcc tgttgtgcct gctggctttc ggcatggccc tcgtgatgg
//
LOCUS       DATIQF010000880         2840 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_59495, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000880 DATIQF010000000
VERSION     DATIQF010000880.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2840
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59495"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..497
                     /locus_tag="VLL95_15130"
     CDS             <1..497
                     /locus_tag="VLL95_15130"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR40241.1"
                     /translation="PHVIIPFSRKITLFRDLYCLYQLIKFLRKEKPDIVHTQTPKAGL
                     LGMIAAGICKVPRRIHTVGGLPIMTSQGLRKFILRITETVTAHFAHQVLANSHKMAEY
                     MVDESLCHPSKLYVLGRGSSNGIDTSHFDENKVEQSREQLRAQHDIPAGAFVFLFIGR
                     MVRD"
     gene            513..1079
                     /locus_tag="VLL95_15135"
     CDS             513..1079
                     /locus_tag="VLL95_15135"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR40242.1"
                     /translation="MEAFEKIASNHPRVWLLLVGPSEEKLDPLKNASWKIIHSHERII
                     QTGYQNDVRPWIKMSDLLLFPSYREGFPNVPLQAASMHVPAIVSNINGCNEIINHGYN
                     GWIVEPGDSTGLLKMMEHLLQNPIEIKSAAGVAREMVEENYSQHFIWNQLAELYRKDE
                     VVSLFTGPRLRPIVGGKLNNNQAQPKVG"
     gene            1194..>2840
                     /locus_tag="VLL95_15140"
     CDS             1194..>2840
                     /locus_tag="VLL95_15140"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14 metallopeptidase family protein"
                     /protein_id="HSR40243.1"
                     /translation="MKKSILSIVLLLSILGGYTQNIPSPKSFLGYEIGQKFTPHHKIV
                     SYFETLAKAAPQQMKLEQYGVTNEGRPLLLAYIGSSQNMANLENIRLNNLKLAGFEGG
                     NGNASAPAIVWMSYNVHGNEASSSEAVMKTAHFLLTDAKAQEWLKSTVVIIDPCINPD
                     GRDRYVNWFNSVVGDVMNPDPLAREHVEPWPGGRSNHYNFDLNRDWAWQTQVETQQRL
                     VKYNQWMPQIHVDFHEQGYNEPYYFAPAAEPFHEVITPWQRDFQTKIGRNHAKYFDAN
                     GWLYFTKERFDLFYPSYGDTWPTYNGGIGMTYEQGGHSRGGLGIINEDGDTLTLTDRA
                     MHHFTTGISTVEMAAQNAGDLLKNFQQFFVNSRNNGVGDYKSFVVKAKDADAKLRKLT
                     QMLKRNGIEFGYADAGPAKGYNYNTGKEETFNLEKGDLIISTHQTKGTLAKVLFEPTS
                     KLSDSATYDITAWSIPYDYGLNAYAVKEKLAASVANAVPLPTKIFSDNDYGYLVRWQS
                     VNEASFLAACLKTGIKARISEKPFEVHGASYPAGTLIFVKT"
BASE COUNT          794 a          659 c          678 g          709 t
ORIGIN      
        1 tgccccatgt cattattcct ttcagcagaa agatcacttt gtttcgtgat ttgtattgcc
       61 tgtaccagtt gattaagttc ttgcggaagg aaaagcctga tattgtgcat acccaaaccc
      121 ccaaagctgg tttgttggga atgattgccg ctggcatttg caaagtgccg agacggattc
      181 atacggtggg cggacttccc atcatgactt cgcaagggtt gcgcaaattc attcttcgta
      241 tcaccgaaac agttacagcg cattttgctc accaagtact tgccaactcc cacaagatgg
      301 ctgaatatat ggtggacgaa agtttatgcc acccttctaa attgtatgta ttgggacgtg
      361 gtagttccaa cgggatcgac acttcacatt ttgacgagaa taaggtggag caaagtaggg
      421 agcaactgcg agcacagcac gacattcctg ccggggcgtt tgtctttttg ttcataggcc
      481 gtatggtgcg tgattaggga gtaggagaga tcgtggaggc ctttgaaaaa attgccagca
      541 accacccccg ggtctggttg cttttggtag gaccttcaga ggaaaagttg gatcctctga
      601 aaaatgccag ctggaaaatc attcattcgc atgagcggat tattcaaacc gggtaccaga
      661 atgatgtgcg tccctggatc aaaatgagtg acctgttatt attccccagt taccgtgaag
      721 gttttccgaa tgtgccgttg caggcggcca gcatgcatgt tcccgctatt gtctcaaata
      781 ttaacggatg caatgaaatc atcaaccatg gatacaatgg ttggattgtg gagcccggag
      841 acagtacagg cctgttaaag atgatggagc acttgcttca aaacccgatt gagataaagt
      901 cagcagccgg cgttgccagg gaaatggttg aagagaacta cagccagcat tttatttgga
      961 atcaattggc agaactctac cggaaagacg aagtggtctc tctgtttacc ggtcccaggt
     1021 tgcgtcccat cgtgggaggg aaactcaata ataatcaggc acaacccaaa gtgggttgat
     1081 cctttttttg catatttcaa aaacagtcgg ttttaccgac tgtttttgtt tgattccgat
     1141 tggttcatcg tcaaatcaat tgcgatatca cagaatgaat taacattgac cccatgaaaa
     1201 aaagcatcct ttctattgtt ttattgctgt caatactggg cggctacaca caaaacattc
     1261 cttctccaaa atcttttttg ggctatgaga taggccagaa gtttacgcca catcataaga
     1321 tcgtgtccta tttcgaaacg ctggccaaag ctgcaccaca gcaaatgaaa ctggaacaat
     1381 atggtgtcac caatgaaggg cgtcctttgt tgcttgccta cataggcagc agccagaata
     1441 tggctaacct ggagaatatc aggttgaaca acctgaaact ggccggcttt gaagggggca
     1501 atggcaacgc ttcagcccct gccatcgttt ggatgagcta taatgttcat ggcaacgaag
     1561 ccagcagcag tgaagcagtc atgaaaacag ctcattttct gctcaccgat gcaaaggccc
     1621 aggaatggct gaagagcaca gtagtcatca tcgatccctg tatcaaccca gacggcagag
     1681 accgttatgt aaactggttc aattcggtgg taggcgatgt gatgaatcct gatcctcttg
     1741 cccgcgaaca cgtggaacca tggcccggcg gaaggagcaa ccattataat ttcgacctca
     1801 accgcgactg ggcctggcaa acccaggtgg aaacgcaaca gcgtctggta aaatacaacc
     1861 agtggatgcc gcagatccat gtcgactttc atgagcaagg ctataatgaa ccctattatt
     1921 tcgccccggc tgccgaacct ttccatgagg tcataactcc ctggcaacgt gatttccaaa
     1981 ccaaaatcgg ccgcaaccac gccaagtatt tcgacgcgaa tggctggttg tatttcacga
     2041 aggaaagatt cgacttgttt tatcccagct atggcgatac ctggcccact tacaatgggg
     2101 gcattggcat gacctacgaa caaggcggcc atagtcgcgg cggtttgggt attatcaatg
     2161 aagatggcga tacgctcacg cttacagatc gtgcaatgca tcattttacc acaggtataa
     2221 gtaccgtgga aatggctgca caaaatgccg gcgacctgct taagaacttc cagcagtttt
     2281 ttgtcaattc ccggaataat ggcgtgggcg attacaagtc atttgtagta aaagcgaaag
     2341 atgcagatgc caaattgaga aagcttaccc aaatgctgaa gcgcaacgga attgaatttg
     2401 gatatgccga tgcaggtccc gccaaaggat ataactacaa taccggcaag gaagaaactt
     2461 ttaacctgga gaagggagat ttgatcattt caactcatca aacaaaaggc acccttgcca
     2521 aagttttgtt tgaaccgact tccaaattat cggacagcgc cacctacgac atcactgcat
     2581 ggagtatacc ttacgactac ggattgaatg cctatgccgt aaaagaaaaa ctggcggcat
     2641 ctgttgccaa tgcagtcccc ttgcccacca aaatattcag tgacaatgac tacggctacc
     2701 tggtacgttg gcaaagcgtg aatgaggctt cttttttggc agcctgtctc aaaacaggga
     2761 tcaaggctcg aatcagtgaa aagccattcg aagtacacgg agcctcttac cctgccggta
     2821 cgctcatatt tgtaaagacc
//
LOCUS       DATIQF010000881         9036 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_196364,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000881 DATIQF010000000
VERSION     DATIQF010000881.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 9036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9036
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196364"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            201..1370
                     /gene="dnaJ"
                     /locus_tag="VLL95_15145"
     CDS             201..1370
                     /gene="dnaJ"
                     /locus_tag="VLL95_15145"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF008035.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HSR40244.1"
                     /translation="MSSKRDFYEILGVSKTASADEIKKAYRKVAMQFHPDRNPGDKAA
                     EEKFKEAAEAYEILSDADKRAQYDRFGHAAFGPGRGGGGHPGGMNMDDIFSQFGDIFG
                     DDIFGSFFGGGGGGRGRGQGRARGSRGSDLRVKIKLNYEEIAKGASKTIKVKKYVGCQ
                     TCSGSGAKDKGIVQTCGTCGGSGQVRRVQNTFLGQMQTVTTCPTCNGEGTTITAKCGS
                     CKGEGRVFGEETVTINIPAGVQEGMELRVEGKGNAGERGGYAGDLRVLIEEETHAELH
                     RDGLNVAYELHISFPDAVFGTEVQVPTIDGKAKIKIPAGTQSGKIFRLKGKGFPSVQS
                     YEKGDQLIHVNVWTPQHVNSEEKAMLEKMMQSEHFKPAPDKNTKSFFQKVKEMFE"
     gene            complement(1407..3212)
                     /locus_tag="VLL95_15150"
     CDS             complement(1407..3212)
                     /locus_tag="VLL95_15150"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="von Willebrand factor type A domain-containing
                     protein"
                     /protein_id="HSR40245.1"
                     /translation="MPFHILCVMVPALLCTVGALSQSYYFTGAFFDNKSQPLANVNIR
                     LHYNQVPFMAGRNGEYGIPSFYASDSAICYIEGFDTLRVLLKHGVLQKHVLQMQPSYA
                     EKLIKASRLSSLTKLPPEYLLNKVDAYTGSGESYHRLAQNQWHKTAIAPFTGFVPNSN
                     KSSYANLRRFVRQQTQVPPNAVRVEELWNYFNLNTIGTLPAHETFHLHNITTDCPWNP
                     GNKLVIINAVARRINIDSLPPVNMVFLIDNSGSMEEANRLPLLKSGFKKMVEFMRPQD
                     RVGIVTYGGAAGIYLKPTFGNEKEKIMQALDSIEAGGSTPGSNGIQLAYELVTTNAFS
                     NGINKVILATDGDFNIGVSEESDLEVLINRYRTTGVTLNCVGVGMGNYKDSKIEVLAR
                     MGNGNFAYLDSDEEAEKALVMQLGESSITVAKDVTIQFGFDQQTVKEYRLVGYENRME
                     ALQVVPQQLIGSEVSSGKCIIGMAEIVPSDSSQLNTGTSGFFEMQYKWPDKDSTLRQV
                     QEFNNQVIPLQQADSTVKMAVTLAWLARELKSNKQTGQFNFEPIEKLAQQCGSAANTE
                     VASLTALLANIRKVYEPVTETKKGRKQKQKNRDNN"
     gene            complement(3264..3800)
                     /gene="hpt"
                     /locus_tag="VLL95_15155"
     CDS             complement(3264..3800)
                     /gene="hpt"
                     /locus_tag="VLL95_15155"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR01203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006166 - purine ribonucleoside salvage
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HSR40246.1"
                     /translation="MNNEIKVLDKTFVPFLSATAIQEQLERLGKTINEDYEGKHPLFI
                     CILNGSFMFASDLLKHINIPAEICFIKLASYKGTKSTGKVVTAIGLDIQLKDRHVVIL
                     EDIVDTGKTLSAFLPEIVNQRPASMAICALLHKPEATVHPIDLQYVGFTIPNRFVVGY
                     GLDYDGYGRNIPEIYQLK"
     gene            complement(3864..4904)
                     /locus_tag="VLL95_15160"
     CDS             complement(3864..4904)
                     /locus_tag="VLL95_15160"
                     /inference="COORDINATES: protein motif:HMM:NF013954.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004040 - amidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HSR40247.1"
                     /translation="MERRNILWVILLLAGGFAKAQTSADYAAYIRQYGALAMEEQTRT
                     GIPAAIKLAQGLLESGAGKGSLVQRSNNHFGIKCKSDWTGEKAYHDDDARQECFRAYP
                     SALDSYKDHSNYLTTSQRYAYLFDLEVTDYKGWAQGLRRAGYATNPKYPQLLIKVIED
                     NHLNDLTDLALKENWDQVDWASNYQYQGKNTPTPVGTTVSKIAAVQVVPENTQLQHTV
                     ADTRISGYPETPFTINEAKVVWAKAGTSMLALASKHKIELSHLLYFNDMDRKDILDQD
                     QLVFLERKKKKCSKEFRLALPGETLWNISQSEGVRLDLLSIWNDLPADKALAEGTKIW
                     LNPPPTASVNSK"
     gene            complement(5014..6501)
                     /locus_tag="VLL95_15165"
     CDS             complement(5014..6501)
                     /locus_tag="VLL95_15165"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR40248.1"
                     /translation="MYKSLLLLFLTLALLSHPAKADYQFRFTEKCSKAYQQIIGLRLK
                     PAAQLLAEEKAADPNNLVPYFLENYIDFFVLFFNEDQKEYNQRIGHKAERLKLMKQGP
                     SNSPFTVFCQSIIHMQWAAVESKFGNRWAAGWDFRDAYKHALSNEQKFPSFSPNWMIT
                     GPIQMVSATIPQSLKWLASLLGIQGDMPGGKQKLDRCLKSNDAWARFFQQEGVFYQCY
                     LQFYLLNQPDDALAFIEQHRLDVVNNHLFTYMAANLNLNNKNSRKTQEIVLGRNQSAE
                     YMATPVWDFELGYAKLYHLETDAIGHFQRFLKSFAGNYYVKDVWLKLGYAYLIAGNMQ
                     QYKYCMQQVRLKGTTVSDADKRALKEAKMQKEPNLVLLKARLLSDGGYPTEAMEILEG
                     KTSRDFTDPTEQLEFMYRVGRIYDDLKQYDKALQAYDATIQTGRQRTEYFAARAALQA
                     GLICEKRGQVSKAISYFKTCIEMEGHDYEESLEQRAKAGLARCKK"
     gene            complement(6567..7322)
                     /locus_tag="VLL95_15170"
     CDS             complement(6567..7322)
                     /locus_tag="VLL95_15170"
                     /inference="COORDINATES: protein motif:HMM:NF014630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-type zinc ribbon domain-containing protein"
                     /protein_id="HSR40249.1"
                     /translation="MATVKDFSVQEKLTSLVRLQKIESKLDEMRVLKGELPMEVADLE
                     DELEGLHHRRVRVEEEINGVNEFIEQKKAAIKESEELIKKYEAQSNNVKNSREFEAIN
                     KEIEMQQLEVKLSEKHIKDAQEELQDKARKLDNANKAIQTKEGILSGKKGELEKIIAE
                     TEKEENHYQELAAQARGKVDERLLASYDRIRNNYRNGLAVVPVLRDACGGCFNAVPPQ
                     RQSEIRQHKKIIVCENCGRILVDQETNDSIETK"
     gene            complement(7371..8480)
                     /locus_tag="VLL95_15175"
     CDS             complement(7371..8480)
                     /locus_tag="VLL95_15175"
                     /inference="COORDINATES: protein motif:HMM:TIGR00486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051540 - metal cluster binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HSR40250.1"
                     /translation="MPTIQSVIMQLEAWAPISYQESYDNAGLITGDKGWPCSGVLCSL
                     DATEEVVNEAIAKGCNLIVAHHPIVFTGLKKLSGNGYVQRAIIKAIKHDIAIYAIHTN
                     LDNVADGVNRMIAERLGLKQESLAVLAPKTGLLCKLHTYVPLENANAVREALFAAGAG
                     HIGRYVECSFSTGGLGSFRPLENTNPAIGTAGGPREQVAEEKVEVILPLHLQQKVLAA
                     LFKAHPYETVAYELVPLQNAHQEVGSGLIGELSETLSETAFLHLLKERFELQMVRHTP
                     LRQRPVRTVALCGGAGSFLTKAAIASGADAYVTADVKYHEFFDADGQLLLADIGHFES
                     EQYTIAGICKFLQDKFPTFAVLQTEVNTNPVCYFV"
     gene            8835..>9036
                     /locus_tag="VLL95_15180"
     CDS             8835..>9036
                     /locus_tag="VLL95_15180"
                     /inference="COORDINATES: protein motif:HMM:NF012999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HSR40251.1"
                     /translation="MTADFSATPTSGCVPLKVQFTDKSTGNPDRWVWDLGEGTTSTEK
                     DPAKLYLTPGQYTITLTVFKGAQ"
BASE COUNT         2008 a         2202 c         2438 g         2388 t
ORIGIN      
        1 cctccacgag gctattaccg agataccggc accgacaccc gaactgcagg gcaaagtgat
       61 tgaccaggta caaaagggat attacctcgg cgacaagatc attcgttttg ccaaagtggt
      121 agtgggaaaa taattgccgc aaggcccttt gtgctttgcc ttttggccag gcgcaaaaca
      181 ttatcagcac gaaaaagaat atgagttcaa aaagagattt ttacgaaata ctgggggtga
      241 gcaaaaccgc ttccgccgat gagatcaaaa aagcttatcg gaaagtggcc atgcaatttc
      301 accccgaccg caacccgggc gacaaagccg ctgaagaaaa attcaaggaa gcggccgagg
      361 cctacgaaat actgagcgat gccgacaagc gggcccagta cgaccgcttt ggtcatgccg
      421 cattcggtcc gggcaggggt ggcggtggcc atcccggtgg tatgaacatg gatgatattt
      481 tcagccagtt cggcgacatt tttggtgacg atattttcgg cagctttttt ggtggcggcg
      541 gcggtggccg tggtcgtggc cagggccgtg cccgtggcag ccgtggcagc gacctgcggg
      601 tgaagatcaa actcaactac gaagagatcg ccaagggtgc cagcaagacc atcaaggtga
      661 aaaaatatgt cggctgccag acctgcagcg gcagcggtgc caaagacaaa ggcattgtgc
      721 aaacctgtgg tacctgcggc ggcagcggcc aggtgagaag ggtgcaaaat accttcctgg
      781 gtcagatgca aaccgtaacc acctgcccca cctgtaatgg ggaaggcacc accatcaccg
      841 ccaaatgcgg cagctgcaaa ggcgaaggcc gggtgtttgg cgaagaaaca gtgaccatca
      901 acatcccagc cggtgtgcag gaaggcatgg aactgcgggt ggaaggcaag ggcaatgccg
      961 gtgaacgtgg cggctatgcc ggcgacctgc gggtgctcat tgaagaagaa acgcatgccg
     1021 aattgcatcg cgatggtttg aatgtggcct atgagctgca catttcattc cctgatgccg
     1081 tgtttgggac cgaagtgcag gtgcccacta tcgatggcaa agccaagatc aaaattccgg
     1141 ccggtacaca gagcggcaag atcttccgcc tgaaaggcaa aggattcccc agtgtgcaga
     1201 gctatgaaaa aggcgaccag ttgatccatg taaatgtgtg gacaccgcag catgtgaaca
     1261 gcgaggagaa agccatgctg gaaaagatga tgcagagtga acacttcaag ccggcgcctg
     1321 ataaaaacac caagtcgttt ttccagaagg tgaaggaaat gtttgaatga ggaagcagat
     1381 ataatgcaag catgaaagaa ccgcgatcaa ttgttgtcgc ggtttttttg tttttgcttg
     1441 cggccttttt tggtttcggt taccggttca taaaccttcc ggatgttggc cagcagcgcg
     1501 gtaagcgagg ccacttcggt attggcagca ctgccgcatt gctgcgccag tttttctatg
     1561 ggttcaaaat tgaactgccc cgtttgcttg ttgcttttca gttcccgggc cagccacgcc
     1621 agcgttacgg ccatcttcac ggtgctgtcg gcttgctgca gtggaatgac ctggttattg
     1681 aactcctgca cctgtcgtag tgtgctgtcc ttgtcgggcc acttgtattg catttcaaaa
     1741 aagccagaag taccagtgtt caattggctt gaatcacttg gaacaatttc tgccattcca
     1801 ataatacatt tacctgaact gacctcggag ccaataagct gttgaggtac cacctgcagc
     1861 gcttccatac gattctcgta acccaccagc cggtattctt tcacggtttg ctgatcaaac
     1921 ccgaactgga tggttacgtc tttggcaaca gtaatagaac tctctccgag ttgcatcacc
     1981 agggcttttt cggcttcctc atccgaatcg aggtaggcaa agttgccgtt gcccatgcgg
     2041 gccagcactt cgatcttgct gtctttataa ttgcccatgc ctacgcctac gcagttcagt
     2101 gtaacgccag tggtgcggta acggttgatg agcacttcca ggtccgactc ttcgctgacg
     2161 ccgatattga aatcgccatc ggtggccagt attactttgt tgatgccgtt ggagaaggca
     2221 ttcgtggtta ccagttcata ggccagttga ataccatttg accccggggt ggagccgccg
     2281 gcttcaatgc tgtcgagtgc ctgcatgatc ttctcttttt cattgccaaa ggtgggcttc
     2341 aggtaaatgc ctgcagcgcc gccataggtt acaatgccta cgcggtcttg cggccgcatg
     2401 aactcaacca tttttttgaa ccccgatttc aacaagggca gccggttggc ttcttccatg
     2461 gagccgctgt tgtcaatcag gaaaaccatg ttgacgggtg gcagtgaatc aatgttgatg
     2521 cgcctggcca ccgcattgat gatcaccagc ttgttgccgg ggttccaggg gcagtcggtg
     2581 gtgatgttgt gcaagtgaaa agtttcatgg gcgggtagtg tgcctatggt attcaggttg
     2641 aaataattcc acagttcctc cacccgcacg gcattgggag gcacctgcgt ttgctggcgt
     2701 acaaagcggc gaagattggc atagctgctt ttgttgctgt taggtacaaa gccggtgaaa
     2761 ggggcgatgg cagttttgtg ccattggttt tgtgccagcc ggtggtacga ttcgccggag
     2821 ccggtataag catccacttt attcagcagg tattcgggcg gcagtttggt gaggctcgac
     2881 aatcggctgg ctttgatgag tttctcagcg tagctcggct gcatttgcag cacatgtttt
     2941 tgcaatacac cgtgcttcag caacacccgc agcgtgtcga atccttcaat gtagcagatg
     3001 gcgctatccg aagcataaaa ggaggggatt ccgtattcgc cattgcggcc ggccatgaat
     3061 ggtacctggt tgtagtgcaa cctgatgttc acattggcca gcggctggga cttgttgtcg
     3121 aaaaaagccc cggtgaaata ataggactgt gacaatgcgc caacagtgca cagcagggca
     3181 ggcaccatca cgcaaagtat gtgaaacggc aatcgtttca tattggcctt aaagatagcg
     3241 gatgcgcaac aagctgtgta cgcttacttg agctggtaaa tttcggggat gttgcggccg
     3301 taaccgtcgt aatccaatcc gtaccctaca acgaaccggt tgggtatggt aaaccccacg
     3361 tactgcaaat cgatggggtg cacggtggct tcgggcttgt gcagcaatgc gcaaatggcc
     3421 atgctggcag ggcgttggtt cacgatttca ggaaggaaag cagaaagggt tttgccggtg
     3481 tccacaatgt cttcgaggat caccacatgc ctgtctttca gttgaatatc gaggcctatt
     3541 gctgtcacaa ctttgccggt gcttttggtg cctttgtaag aagccagttt tataaagcag
     3601 atctctgcgg gtatgttgat gtgcttgagc aggtcggagg caaacatgaa ggaaccattg
     3661 aggatgcaga taaacagggg atgcttccct tcataatctt cattgatggt ttttcccaat
     3721 cgttccagtt gttcctgtat ggcggttgct gacaaaaagg gtacgaaagt tttgtccagc
     3781 actttgatct cgttgttcat gcctgtatgc ttggtattgg gctgcaaggt acgcaaccac
     3841 gccgggctaa atgcagtgaa aagtcatttg gaattgacgc ttgcagtggg tggcgggttc
     3901 agccatattt tggtgccttc ggccagggct ttatcggcgg gaaggtcgtt ccaaatgctg
     3961 agcaggtcga gccgcacgcc ttccgactga ctgatattcc acagtgtttc gccgggcagt
     4021 gccaggcgga attctttgct gcattttttc tttttccttt ccaaaaacac cagttggtcc
     4081 tggtcgagaa tgtctttgcg gtccatgtcg ttgaagtaca gcaaatggct cagctcgatt
     4141 ttatgtttgc tggccagtgc cagcatggaa gtgcctgcct tggcccacac cactttggct
     4201 tcgttgatgg tgaacggcgt ttcggggtat ccgctgatgc gggtatcggc tacggtgtgc
     4261 tgcagttggg tattttcggg aaccacctgc acggccgcta tcttggaaac cgtagtgccc
     4321 acgggggtag gggtattttt tccctggtat tgataattgg aggcccagtc tacctggtcc
     4381 caattctcct tcagggctag gtcggtgaga tcgttcaggt gattgtcttc aatcacttta
     4441 atcagcaact gcgggtattt tggattggtg gcgtacccgg ccctgcgcaa tccctgcgcc
     4501 cagcctttgt agtctgttac ttccaaatca aaaagataag cgtatcgctg gctggtggtg
     4561 aggtagttgc tatggtcttt gtaggaatcc aatgcggaag ggtaggccct gaaacattcc
     4621 tggcgggcat catcgtcgtg gtaggctttt tctccggtcc agtctgattt gcacttgatg
     4681 ccaaagtggt tattggagcg ctggaccagg ctgcctttcc cggctcctga ttctaacagt
     4741 ccctgtgcca atttgatggc cgccggtatg ccggtcctgg tttgctcttc catggccagg
     4801 gcgccatatt gccggatgta ggccgcgtaa tcggcggagg tttgtgcctt agcaaaacct
     4861 cctgccaaca gcagaatgac ccacaatatg ttcctgcgct ccatgcgaca aaaataagtg
     4921 cttgtaaaaa atcaattgct aatataaaac gttgcctgtg gggacgctat tgcccgtttt
     4981 gcacgcagcc gtttctccag tggatagcgg ccgctatttc ttgcacctgg ccagtcctgc
     5041 cttcgctctt tgttccaggc tttcttcata gtcgtggcct tccatttcga tgcaggtttt
     5101 gaagtagctg atcgcttttg atacctgtcc tcttttttca cagatcaggc cagcctgcaa
     5161 tgcggccctg gctgcaaaat actcggtacg ctggcggccg gtttgaatgg tagcgtcgta
     5221 tgcctgaagg gctttgtcgt actgtttcag gtcgtcgtaa atgcgaccca cccggtacat
     5281 gaattccagt tgctcggtgg gatccgtgaa atcgcgactc gtttttcctt ccagtatttc
     5341 catggcttcg gtggggtagc caccgtcgct cagcagcctc gccttcagta gcaccaggtt
     5401 gggctccttc tgcatcttgg cttctttcag tgcccgcttg tcggcatctg atacggtggt
     5461 gcccttcagc ctcacctgct gcatgcagta tttgtattgc tgcatattgc cggctatgag
     5521 gtaggcgtag cccaatttca gccacacatc tttcacgtaa tagttgcctg caaatgattt
     5581 caggaatcgc tggaaatgcc cgatggcatc ggtttccagg tgatacagtt tggcgtagcc
     5641 cagttcaaaa tcccatacgg gtgttgccat gtattcggcc gactggttgc ggcccaaaac
     5701 tatctcctgg gttttgcggc tgtttttgtt gttcaggttc aggttggctg ccatgtaggt
     5761 aaacaggtga ttgtttacca catccaggcg atgctgctca atgaaagcca gcgcatcatc
     5821 gggttggttg agcaggtaaa actgcaggta acattgatag aaaacccctt cttgctgaaa
     5881 gaaccgggcc caggcatcgt ttgatttcag gcatcgatcc agtttttgct ttcccccggg
     5941 catatcgcct tgtatgccca gcaggctggc cagccatttc aaactctggg gtatggtggc
     6001 tgaaaccatt tggatggggc cggtaatcat ccagttggga gagaaggaag ggaatttctg
     6061 ctcattgctc agcgcatgtt tgtacgcatc cctgaaatcc cagcctgccg cccagcggtt
     6121 gccaaatttc gattccactg ccgcccattg catatgaatt atggactggc aaaaaacagt
     6181 gaacggtgaa ttggagggtc cctgtttcat cagcttcagc ctttcggctt tgtgtccaat
     6241 gcgttggttg tattcctttt ggtcttcatt gaaaaagagc acaaaaaagt cgatgtagtt
     6301 ttccaggaaa tagggtacca ggttgttggg gtcggcggct ttttcttcag ccagcagttg
     6361 ggcagcgggc tttagcctga gaccgataat ctgctggtag gccttcgagc atttttcagt
     6421 aaacctaaac tggtaatctg ctttggccgg atgggaaagc agtgcaagtg tcagaaaaag
     6481 aagcaggagt gatttgtaca cgatgcaaat aaaaacaaaa cgggacagcc attagccgtc
     6541 ccgttttgaa caaaacatga aagttattat ttcgtctcaa tagaatcatt cgtttcctgg
     6601 tccaccagga tacggccaca gttttcgcaa acaatgatct ttttgtgctg gcgaatttca
     6661 ctctggcgtt gtggaggcac tgcgttgaag cagccaccac aggcgtcgcg aagtacagga
     6721 actacagcaa ggccgttcct gtaattattg cgaatgcggt cgtatgatgc cagaagtctt
     6781 tcatccactt tgccacgggc ctgggcagcc agttcctggt agtgattttc ttccttttcg
     6841 gtttcggcaa tgattttttc gagttcgcct tttttgccgc tcagtatgcc ctccttcgtt
     6901 tggatggctt tgttggcatt gtccagtttg cgggctttgt cctgcagttc ttcctgggcg
     6961 tctttgatat gcttttcaga cagctttact tccagctgct gcatttctat ttccttgttg
     7021 atggcctcaa attcgcggct gttctttacg ttgttgcttt gggcttcgta tttcttgatc
     7081 agctcttccg attctttgat ggcggccttc ttttgctcaa tgaactcatt tacgccgttg
     7141 atttcttcct caacacgtac gcggcggtgg tgtaagcctt ccagttcatc ctccaggtcg
     7201 gctacttcca tgggaagttc gcccttcaaa accctcattt catcgagttt ggattcaatt
     7261 ttctgcaggc gtaccagtga agtcagcttc tcctgtaccg aaaaatcctt aacagtggcc
     7321 atggatgtcg tatgaatttt taattgatag tcagctattt agcagctgtc tcaaacaaaa
     7381 taacacaccg gattggtgtt tacctcggtt tgaaggacgg caaaagtagg gaatttgtcc
     7441 tgcaaaaatt tgcaaatgcc tgctatagta tactgttcgc tttcgaaatg accgatgtct
     7501 gccagcagca gttgaccatc ggcatcaaag aactcgtggt acttcacatc ggcggttaca
     7561 taggcatcgg ctccggaggc aatagctgct ttggtgagga aagagccggc gcctccgcaa
     7621 agggccaccg ttcgcaccgg ccgctggcgg aggggggtgt gccttaccat ctgcagctcg
     7681 aagcgttctt tgagcaggtg caggaaggcg gtttcggata gggtttccga gagttcgcct
     7741 atcaatccgc tgcccacttc ctggtgggcg ttttgcaaag gtaccagttc ataggccacg
     7801 gtttcgtaag ggtgggcttt gaacagggct gccagcactt tttgctgcaa atgcaggggg
     7861 agtatcactt ccactttttc ttcagctacc tgttcgcggg ggccgcctgc agtaccaatg
     7921 gccgggttgg tattttcaag agggcggaag cttcccaggc cacccgtgct gaagctgcat
     7981 tccacataac ggccgatgtg gccggcacca gctgcaaaca atgcttcccg cacggcattg
     8041 gcattttcca gcggcacata tgtgtggagt ttgcaaagca accccgtttt gggggccagt
     8101 acagcaagtg attcctgctt aagaccaagc cgttctgcaa tcattcggtt gacaccatcc
     8161 gccacattgt cgaggttggt gtggatggcg tatatggcta tatcatgctt gatggctttg
     8221 atgatggctc tttgcacata tccattgccc gaaagctttt tgagacctgt gaaaacgatg
     8281 ggatggtggg cgacgataag gttgcagcct ttggcaatgg cttcatttac cacttcctca
     8341 gtggcgtcca gcgagcacaa aacccccgaa catggccatc ctttgtcgcc ggtgatgagc
     8401 cctgcattgt cataagattc ctggtagcta attggtgccc aggcctccag ttgcatgata
     8461 acagattgaa tggtaggcat attcggtaca gtttttgtga aaatggcagg agaatttgat
     8521 aacgcaaact taccggcgtg gccgcgcaat attaacagcc attccgagtt tatggacaaa
     8581 gaaaagcgtc gccaattcgc caataccaac aaattgggat acaaatgtgg gcaggcctcg
     8641 gccattgccc ccaggatgtt gtgaaaatct gaataacctg aggaacacca gcgcctgtga
     8701 tgccattatt ttgttgctgc gaatttgtga gcccaacagt aagatactga ggtagagttt
     8761 tgatgccgtt atataaaatc agataccagc tgctgcttgc agtaagtatg ctgtgcctgc
     8821 aagcaaaggc gcagttgaca gctgattttt ctgcaacccc taccagcggc tgtgttcctc
     8881 ttaaggttca gttcaccgac aagtccacag gcaaccctga ccgttgggtt tgggatttgg
     8941 gagaggggac caccagtacg gaaaaagatc ccgccaaatt gtacctcact cccggtcaat
     9001 acaccataac actgacagta ttcaaaggcg cccagt
//
LOCUS       DATIQF010000882         5352 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_272679,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000882 DATIQF010000000
VERSION     DATIQF010000882.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5352
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272679"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..834
                     /locus_tag="VLL95_15185"
     CDS             <1..834
                     /locus_tag="VLL95_15185"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSR40252.1"
                     /translation="SEIGHFNVFRLDPYVGVHAKPVPYSRRDFYKITTTLGNGKVYYA
                     DKAYEVKKQALTFSSPQIPYKWEHLDKITGGVFCIFDQHFFHQFGNLNQYAVYQPGGN
                     RIFELSDDQLAKVLPIFQRMFEEQASDYQHKYDILRTLVLELIHFALKLEPNAEVGSH
                     AAHNAAQRIATLFLELLERQFPIDESHPHLQLRSASDFASQLNVHVNHLNRAVKAITD
                     KTTTQIIGERILQESKVLLRHSPWNVSEIAFSLGFSETTHFNNFFKKQMGVSPLKFRH
                     G"
     gene            complement(873..2894)
                     /locus_tag="VLL95_15190"
     CDS             complement(873..2894)
                     /locus_tag="VLL95_15190"
                     /inference="COORDINATES: protein motif:HMM:NF015588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40253.1"
                     /translation="MKQLLTLALIGLNTLVMAQDPWKISATNFNNAPYYGITVANGMI
                     GIVSAPEPFKVKDVVLAGAYDTYGRGRVSNFIPSFNLLNMRFDIDGRGMEAGNISNFK
                     QELDMKNASFTGSFDHQDKASVSYTYYALRHLPYTVLMDVTVTAKKDISINAASVMAA
                     PDLLKDVQNYYNEIDRPHVVISLLTSTAKSPTGKMLMSASNSFIFSETHGHEPRVIHE
                     MWDNNMHLMKFNKTMKAGETYRFSITGSSITSAHHDDPLNEAERLTIFAKLEGRDRLL
                     QRHQQAWNDLWKSDIVIEGDAQSQQDVRSMLYHLYSFTREGTALSPSPMGLSGLGYNG
                     HVFWDTELWMYPSLLVMHPEIARSMVEYRFKRLETAKRNAFSKGYKGAMFPWESAETG
                     VEETPVWALSGPFEQHITACVAIAAWNYYRVTQDKQWLREKGWPILKETADFWSSRVE
                     RKGPGRYEINNVVAADEWAENVNNNAFTNAAAKANLQFATQAASLLGLPANADWMQVA
                     QNIPIVRENGITKEHETYKGEGIKQADVNLLAYPLKEVTDPKQIKADLDYYSQRVPNE
                     GTPAMTQGVFALLYARLGDADKAFYWFKDSYLPNLLPPFRVIAETKGGTNPYFATGAG
                     GILQSVLMGFGGLEITDNGIIQQKGLLPKTWKSLTITGVGPERKTYTVK"
     gene            complement(3141..4532)
                     /locus_tag="VLL95_15195"
     CDS             complement(3141..4532)
                     /locus_tag="VLL95_15195"
                     /inference="COORDINATES: protein motif:HMM:NF021523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2252 domain-containing protein"
                     /protein_id="HSR40254.1"
                     /translation="MPDSTRSFLASKLTADFQQSAGKAVRSKVPFEDLLIIKKQFKRP
                     NPIKIITDQNATRIKKLVPVRHARMAQSPFAFFRGSAAIMAADLNRQPNTGILVQACG
                     DMHVSNFGLFASAERQLTFAINDFDETHIAPWEWDVKRLTASAHIASEHLGGKQNDRD
                     ETVLQCVLSYQKWIRHYAKMGHLDIWYDTIGEEEILSSLTANAAGLAKKAFEKARQRN
                     HLQVLEKFGDMVDDKFLLKENYPFLYHDPVTVNNTPVLSLLDEFLKQYLSSLPLERRG
                     LLSRYTFRDVVRKVVGVGSVGTACWVLFFEGTGHEDPLFLQLKEARQSVLEPFTQPCT
                     YTNQGQRVVTGQRLIQGSPDIFLGFGHLENTDFYVRQLRDMKGGFDLEPGKMSVRQLQ
                     KYAALCGHALALAHAKSGNAPIMAGYLGKSEKFAEVMVSYAADYARQNQADYEAFLSA
                     IKNGKLAIAEKAR"
     gene            4858..>5352
                     /locus_tag="VLL95_15200"
     CDS             4858..>5352
                     /locus_tag="VLL95_15200"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HSR40255.1"
                     /translation="MDPGDSGIHFANNIQESQSLSVLNYEYIYNGGGVGIGDFNNDSL
                     PDIYFTGNMVSNQLYLNKGDFQFEDITEAAGVNGGGKWCKGVSVVDINNDGWQDLYVC
                     AAVTEDSNARRNLLYVNQGIPQGKTIPVFKEMAAEYGLDDASNTHMAAFFDYDNDGDL
                     DVYLL"
BASE COUNT         1261 a         1326 c         1359 g         1406 t
ORIGIN      
        1 agtgaaatcg ggcatttcaa tgtttttcga ctggaccctt atgtaggggt tcacgcaaag
       61 ccagtgccgt acagccgaag ggatttttat aagatcacca ccacgctggg aaacgggaaa
      121 gtgtactatg ccgacaaagc ctacgaagta aagaagcagg cgctcacctt ttcgagtccg
      181 caaattcctt acaagtggga gcatctggac aagatcacag gcggtgtttt ctgcattttc
      241 gatcagcact tctttcacca gtttggcaac cttaaccaat atgctgttta ccagcccggt
      301 ggtaaccgaa tatttgaatt gtcagatgat caattggcta aagtattgcc catctttcag
      361 cggatgttcg aagaacaggc atcagactac cagcataagt atgacattct tcgcaccctt
      421 gtgcttgaat tgatacactt tgctttaaaa ctggagccca atgccgaggt gggttcacat
      481 gctgcacaca atgctgcgca gcgtatcgcc actttgtttt tagaattgct tgaacgtcag
      541 ttcccgattg acgaaagtca tccgcatctt cagttgcgtt ccgcctccga ctttgcatca
      601 caattaaatg tgcatgtcaa tcacctgaac cgtgcagtaa aagccattac cgacaagacc
      661 accacgcaga tcattggtga acgcattctt caggaatcaa aagtgctgct caggcacagc
      721 ccatggaatg tatctgaaat tgccttttca ctaggcttca gcgaaaccac ccacttcaat
      781 aattttttca agaaacaaat gggggtaagt ccgctgaagt tcaggcatgg ttagcgccaa
      841 tgccaaactc aagttacaac ctggtcagtg gttcacttta cagtataagt cttccgctca
      901 ggacctacac ccgttatcgt caggctcttc catgttttgg gtaacaatcc tttttgctgg
      961 atgatgccgt tgtcggtaat ctcgagccct ccaaaaccca tgagcacact ttgcaggatg
     1021 ccgccggcac cggtggcaaa atagggattg gtgccaccct tggtctcagc aatcacccgg
     1081 aagggaggca gcaggttggg caggtaagag tccttgaacc agtaaaatgc cttatcggca
     1141 tcgccgaggc gtgcatacag caaggcaaat acgccctgtg tcatggcggg tgtgccttca
     1201 ttgggcaccc gttggctgta gtagtcgagg tcagccttga tttgtttggg atcggtcact
     1261 tctttcagcg ggtaggccaa caggtttaca tcggcctgct tgatgccttc acctttgtag
     1321 gtttcatgtt ctttggtgat gccgttttcg cgaacgatgg gaatgttctg cgccacctgc
     1381 atccagtcgg cattggcagg caagcccagt aacgatgcag cttgcgtggc aaattgcaaa
     1441 ttggctttgg ccgcggcatt ggtgaaagcg ttgttgttca cgttctccgc ccattcatcg
     1501 gctgccacca cattgttgat ctcgtatcgg cccgggcctt tgcgttccac ccggctgctc
     1561 cagaagtcgg ccgtttcttt caggatgggc cagccttttt cacgcagcca ttgtttgtct
     1621 tgtgtaacgc ggtaatagtt ccaggcagca atggccacgc aggcggtgat gtgttgttca
     1681 aagggaccac tcagtgccca caccggtgtt tcttccacgc cggtttcagc actttcccaa
     1741 gggaacatgg cgcctttgta acccttgctg aaggcattgc gtttggcggt ttccaggcgt
     1801 ttgaaacgat actccaccat gctgcgggca atttcaggat gcatcaccag cagggatgga
     1861 tacatccaca attcggtatc ccaaaacacg tgaccgttgt atcccagtcc gctcagtccc
     1921 ataggagaag gcgaaagggc ggtgccttcg cgggtgaatg aatacaggtg gtacagcatg
     1981 ctgcgtacat cctgctggct ttgcgcatcg ccttcaatca cgatatcact tttccaaaga
     2041 tcgttccatg cctgctggtg gcgttgcagc aaacggtcgc ggccttccag cttggcaaaa
     2101 atggtcaggc gttcggcttc attcaacggg tcatcgtggt gcgccgatgt aatggaagac
     2161 ccggtgatgg agaagcgata agtttctcct gccttcatgg ttttgttgaa tttcatgagg
     2221 tgcatgttgt tgtcccacat ttcgtggatc acccgcggct catgaccatg ggtttccgaa
     2281 aaaatgaaac tgttgcttgc actcatcagc atcttgcccg tggggctttt ggccgtagaa
     2341 gtgagcagcg atatcaccac atgcggccgg tcgatttcgt tgtaataatt ctggacgtct
     2401 ttcagcaggt cgggggcggc catcacactg gccgcgttga tgctgatgtc ttttttggcg
     2461 gtaaccgtca catccatcag caccgtgtag ggcaggtggc ggagcgcata gtaggtgtaa
     2521 gaaacagagg ctttgtcctg gtgatcaaaa gagccggtga aggaagcatt tttcatgtcc
     2581 agttcctgct tgaaattgct gatgttgccg gcctccatgc cgcggccatc aatatcaaaa
     2641 cgcatgttca gcaggttgaa actcgggatg aaattgctca cccttccgcg gccgtaggtg
     2701 tcgtaggctc ctgccaacac cacatccttt actttgaaag gctccggggc acttacgatg
     2761 ccaatcatgc cattggcaac cgtgatccca tagtacggcg cattgttaaa attggtggca
     2821 ctgatcttcc agggatcctg ggccatcacc agcgtattca aaccgatcaa ggcgagcgta
     2881 agcaattgtt tcatacagca cattttgaga gaagctaatt tatggagatg tgttcaccct
     2941 tgcgggatac tttatcactg caaaggtttg tgtaagaagt aatggagaag tcctcagaaa
     3001 atttgaaccc ggtatgcctg cattcatttt gaataactgc ccgggatcat gaccattcta
     3061 atgatactag tcctggccat tgggtgccat tacaaccgtg ccggtttgaa agcaacctcc
     3121 cgaaagatga accatggttg tcatcttgct ttttcggcaa tggccagttt tccatttttg
     3181 atggctgata aaaatgcttc atagtctgcc tggttttggc gggcataatc agccgcataa
     3241 gaaaccatca cttccgcaaa cttttcactt ttgccaaggt agcctgccat gattggtgcg
     3301 ttgcccgatt tggcatgggc cagtgccagc gcatgcccgc aaagggcagc atatttctgc
     3361 aattggcgca cactcatttt gccgggttcc agatcaaatc ctcctttcat atcccgtagc
     3421 tggcgcacat agaaatcagt attttccaaa tggccaaagc ccaggaaaat atcaggcgac
     3481 ccctgtatga gccgctggcc agtaacaact ctctggccct ggttggtata agtgcagggt
     3541 tgtgtaaatg gctccagcac cgactgccgt gcttctttca attgcaggaa cagcggatcc
     3601 tcgtggccgg taccttcaaa aaacagcacc cagcaggcag tgcctacact gcctactcct
     3661 actactttgc gcaccacatc acgaaaggta tatcgcgaca gcagcccccg cctttccaat
     3721 ggcagggaag aaaggtattg ttttaaaaac tcgtcgagca gtgataagac cggggtatta
     3781 tttacggtca ccggatcatg gtagagaaat ggataatttt ctttgagaag aaatttgtca
     3841 tcgaccatgt cgccaaactt ttccaggacc tgcaggtggt tgcgttgcct ggctttttca
     3901 aaagctttct ttgccaggcc ggcagcattg gcagttaatg aagaaagtat ttcttcctcc
     3961 ccaatggtat cgtaccaaat atcgaggtga cccattttgg cgtagtgtcg tatccatttt
     4021 tggtaactca gcacacattg caacacggtt tcgtccctgt cattttgttt gccgcccagg
     4081 tgttccgacg cgatatgcgc actggccgtc aggcgtttta catcccattc ccagggggct
     4141 atatgtgttt cgtcaaaatc attgatggca aaagtgagct gtctttcggc cgatgcaaaa
     4201 agaccgaaat tggacacgtg catgtcgccg caggcctgca ccaaaatgcc ggtattgggc
     4261 tgtctgttca ggtcggcggc catgatggct gccgaacccc tgaaaaacgc aaaaggcgat
     4321 tgagccatgc gggcatggcg caccggtacc agttttttga ttcgggtggc attttggtca
     4381 gtgatgatct taatagggtt ggggcgcttg aattgctttt tgatgatcag caaatcttca
     4441 aaaggcactt tactgcgcac cgccttgccg gctgattgct gaaagtcggc agtgagtttg
     4501 ctggctaaaa aggagcgggt agagtcgggc atggcaaaag ctattgactc aatatacgca
     4561 catagtccgt catgtaatgc attttgccag agccacctca agggatctgt cccattgcag
     4621 ttggtttctt ccccactgca aaggtttgaa atgcacacga gtggcagcgg gccatttccg
     4681 gcaaaggcgc tttcggtttg cgtatacaca aatagctata ttgcagcaat cgggaaaccg
     4741 caccggatgc ggtgttcctt tgacaaacta tcactgctga tgcgtatttg tttgactgcc
     4801 ttagtgctgt gtttatggtt gtatgggtgc cggtcgaaaa acactttgtt tactgctgtg
     4861 gatcctggtg acagcggcat tcattttgcc aataatatcc aggagtcgca atcgctgagt
     4921 gtgctcaatt acgaatacat ctacaatggc ggtggcgtgg gcatcggcga tttcaacaac
     4981 gacagcctgc ccgatattta tttcaccggc aacatggtgt ccaaccaatt gtacctcaac
     5041 aaaggcgact ttcagtttga agacattacc gaagcagccg gtgtaaatgg cggtggtaaa
     5101 tggtgcaaag gcgtaagcgt ggtggacatc aacaatgatg gctggcagga tttgtatgta
     5161 tgtgcggctg taacggaaga cagcaatgcc cgccgcaacc tcttgtatgt aaaccagggg
     5221 ataccgcagg gaaaaaccat tccagtgttc aaagaaatgg cggctgagta tgggctcgat
     5281 gatgcttcca acacccacat ggctgccttc ttcgattacg acaacgatgg cgacctcgat
     5341 gtgtacctgt tg
//
LOCUS       DATIQF010000883         2722 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_181216,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000883 DATIQF010000000
VERSION     DATIQF010000883.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2722
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181216"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2109)
                     /gene="hypF"
                     /locus_tag="VLL95_15205"
     CDS             complement(<1..2109)
                     /gene="hypF"
                     /locus_tag="VLL95_15205"
                     /EC_number="6.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003998 - acylphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HSR40256.1"
                     /translation="MTDCKHIHLKGLVQGVGFRPHVYALATQLQLNGYVNNSPDGVHI
                     VVAGPRKQVEQFLQQLQSHPPRHAVITQAEVRDIPLQPFDHFSITESENHLTPDLLLT
                     PDLAMCELCRQELFDENNRRYHYPFITCIHCGPRYSITTALPYDRCNTTMDAFEQCRH
                     CKQEYLHPDNRRYFSQTNSCDECGISLQLFETGNDFLSLETDEILTTINAALQDGKIV
                     AVKGIGGFLLMCDAGNATAIATLRKRKHRPSKPLALLYPDLDKLRTHVHLTPAEEEML
                     LDSRAPIVLCTPTENAGESLALASISPGLNRIGVMLPYAPLLALVADRFGRPLVATSG
                     NVSGAPIIYENQVALNALSPVADLILLHNRDIVTPQDDSVVQFSAKHQQFIMLRRSRG
                     WAPGYYPNTLPDINEKILATGGELKGSFALQFGNKCYVSQYLGDQSYFEAQESYQHTL
                     QHLSHLLKFEPDHILIDKHPAYEVSAYGKQLSHIKAASLHKMQHHEAHVAAVLAENNL
                     LQHEHPILGLAWDGTGYGNDGAIWGSEAFIYHFGSFNRVAHLDYFPILMGDKMSKEPR
                     LSAMSLIHHRDDVAEWLEHKFDASSWKLYKNALTQLDMPKTSSMGRLLDGIASLLDLI
                     DVSRYEGHAAMLLQAAAEKCVTAASAYPMPIADDRIQWQPMVDAIIEDLKAGTPTETI
                     AKAVHQSLAQLAIQLGELHHT"
     gene            complement(2106..>2722)
                     /gene="hypB"
                     /locus_tag="VLL95_15210"
     CDS             complement(2106..>2722)
                     /gene="hypB"
                     /locus_tag="VLL95_15210"
                     /inference="COORDINATES: protein motif:HMM:TIGR00073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HSR40257.1"
                     /translation="RNRGYFEAKSILALNLVSSPGSGKTTLLEKTLAAILPQQACAVI
                     EGDQQTQNDARRIAATVAPVVQINTGKGCHLDAEMINKAMKQLTLAENSILFIENVGN
                     LVCPAMFDLGEQARVVIASVTEGDDKPLKYPDMFHTSNLCIINKTDLLPYVPFDIEKF
                     KANARKVNHHLEFIELSALTKDGMQHWLHWLQHQLAHARQHIHE"
BASE COUNT          610 a          635 c          722 g          755 t
ORIGIN      
        1 agtgtggtgt agttctccca attgtatggc cagttgcgcc agggattggt gcactgcttt
       61 tgcaatggtt tctgtgggtg tacctgcttt taagtcttca ataatggcat ccaccattgg
      121 ttgccattgt atgcgatcgt ctgctattgg cataggataa gccgatgcag cagtaacgca
      181 tttttctgcc gcagcttgca acagcatagc cgcatgtcct tcgtagcgtg atacatcaat
      241 caaatccagc aaactggcaa tgccatccag caatcttccc atgctgctgg ttttgggcat
      301 gtcgagttga gtcaaggcgt tcttgtacaa cttccaggat gaggcgtcga acttgtgttc
      361 cagccattcg gcaacatcat cacgatgatg aatgagcgac atggcagaga gccgtggctc
      421 tttgctcatt ttatcaccca tgagtatggg gaagtaatca agatgcgcta cgcggttgaa
      481 gctgccaaag tgatatataa aagcttcgct accccaaatg gcaccgtcat ttccatagcc
      541 ggttccgtcc cacgccaatc caagaatagg atgctcgtgc tgcagcaggt tgttttctgc
      601 aagaactgct gctacatgcg cttcgtgatg ttgcatcttg tgcaggctgg ccgctttgat
      661 gtgcgagagt tgcttgccat aagccgacac ttcgtaagca ggatgcttgt caataagtat
      721 gtgatcaggt tcaaacttca gcaaatggct caggtgttgc agggtatgct ggtagctttc
      781 ctgggcttca aaatagctct ggtcgccgag gtattgactc acgtagcatt tgttgccaaa
      841 ttgcagggca aaacttcctt tcagttctcc gccagtagcc aggatttttt cattgatatc
      901 gggcagtgta ttaggataat aacccggtgc ccaacccctg ctgcggcgca gcatgatgaa
      961 ttgttgatgc ttcgcactga attgcactac gctgtcatcc tgcggtgtta caatgtcgcg
     1021 gttgtgcagc agaatcaagt cggccacagg gctgagtgca ttcaaggcga cttggttttc
     1081 gtaaatgatg ggcgctccac ttacattgcc gctggtggcc accaatggtc gtccaaacct
     1141 gtcagctacc agggcgagga gcggtgcata gggaagcatg acgcctatgc gattaaggcc
     1201 cggtgaaata cttgccaaag ccagtgattc acccgcattt tcggtggggg tgcagagtac
     1261 aatcggtgcc ctgctgtcca gcaacatttc ttcttccgca ggggtcaaat gcacatgggt
     1321 cctgagctta tcgagatcgg gatacaacaa ggccagtggc ttggagggcc gatgttttcg
     1381 tttgcgtaag gtggctatgg ctgttgcatt gcctgcatcg cacatgagta agaaaccacc
     1441 aatgcctttc acggctacaa ttttgccatc ctgcaaagca gcattgattg tggtcagaat
     1501 ttcatctgtc tccagtgaca aaaaatcatt gccggtttca aacaactgaa gactgatacc
     1561 acattcatcg caggagttgg tttggctgaa atatcgccgg ttatcagggt gcaggtattc
     1621 ctgcttgcaa tgcctgcatt gctcaaaggc atccatcgtg gtgttgcacc tgtcgtatgg
     1681 gagcgcagtg gtaatggaat agcgtggacc acaatgaatg caggtgataa aaggataatg
     1741 atagcgcctg ttgttttcat caaacaattc ctgccggcaa agttcacaca tggccaggtc
     1801 aggcgttagc aacaagtctg gtgtcaaatg attttcactt tcagtaatgc tgaagtgatc
     1861 gaatggttgc aggggaatat cccgcacctc tgcctgcgtg atcactgcat gcctgggtgg
     1921 atgggattgc agttgttgca ggaactgctc gacttgtttg cgagggccgg ctactacaat
     1981 gtgcaccccg tcaggactgt tgtttacata gccattcaat tgcagttgtg tagccaatgc
     2041 gtaaacatgc ggccggaatc caacgccctg caccaggcct tttaggtgta tgtgtttgca
     2101 gtccgtcatt cgtgaatgtg ttgcctggca tgtgccagtt ggtgttggag ccaatgcagc
     2161 caatgttgca ttccatcctt tgtcaatgcg gacaattcaa tgaactcgag gtgatggttg
     2221 accttgcggg cattggcctt gaatttttca atatcgaacg gaacatatgg caacaggtcg
     2281 gtcttgttga tgatacacag gttggaagta tggaacatat ccgggtactt caatggtttg
     2341 tcgtcgcctt ctgttacaga ggcgatgacc actcttgcct gctcgccgag gtcgaacatg
     2401 gcagggcata cgaggttgcc aacattctct atgaataaaa tgctgttttc tgcaagggtc
     2461 aactgcttca tcgccttgtt gatcatttca gcatcgaggt ggcatccttt gcctgtgttg
     2521 atttgaacaa caggtgctac ggtagccgct atccgccggg cgtcgttttg tgtttgctga
     2581 tcgccttcta tcacggcaca ggcctgttgg ggcaatatgg ctgccagtgt tttctcgagc
     2641 agggtggttt ttccgctgcc gggagaactg acaagattga gggccagtat acttttcgct
     2701 tcaaaatatc cgcggtttct tt
//
LOCUS       DATIQF010000884         4179 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_89824, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000884 DATIQF010000000
VERSION     DATIQF010000884.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4179
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89824"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..749)
                     /locus_tag="VLL95_15215"
     CDS             complement(<1..749)
                     /locus_tag="VLL95_15215"
                     /inference="COORDINATES: protein motif:HMM:NF013871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HSR40258.1"
                     /translation="MQIDLLAAEASIFKKIATRAQHLGMEAWVIGGFVRDKILGRPTK
                     DADIVCAGDGIALAHAVADMFTPRPHVSFFKNFGTAHIRIADLDIEFVGARKESYSHH
                     SRKPQVEPGTIEDDQLRRDFTINALAISLNQDDYGQLIDPFNGLQHLQEKLIITPQDP
                     IKTFSDDPLRMMRAIRFASQLHFSIHPTTLEAIKQDAHRISIISKERIADELNKIVLS
                     SKPSIGLDLLYQTGLLEKLFPQMVALAGAEY"
     gene            complement(919..1899)
                     /locus_tag="VLL95_15220"
     CDS             complement(919..1899)
                     /locus_tag="VLL95_15220"
                     /inference="COORDINATES: protein motif:HMM:NF020795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1963 domain-containing protein"
                     /protein_id="HSR40259.1"
                     /translation="MIGFESSLIFGKYRRAIFVGLALIVIFQFKANSQQYPFGIPPIL
                     KDRSALVAKVKRLPWDEPLKIESLIEPSLIPIIDTAIKTITGQSKFGGMPDLPSDWNW
                     PTYKNEPMVFLGQVNLKEVSAIYSDSLLPKQGILFFFCFFNQPENEYGPSYEFKRSNE
                     EYKVLYFNGNNDQLKTRPFPEKLYSGYHFASLPIRFELIHYFPNTTETYRFQKAGLNR
                     NDEMLFNEMTDLSGLFLPDIILGTPSPRQYGADYDWAYAFLKVPLQEYENPDWREKVN
                     TLVPDFINLFSFALEDKFKILGYTNCNFGIRKQDLKARNFDKTVFIMQGD"
     gene            complement(1986..3008)
                     /locus_tag="VLL95_15225"
     CDS             complement(1986..3008)
                     /locus_tag="VLL95_15225"
                     /inference="COORDINATES: protein motif:HMM:NF021554.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2279 domain-containing protein"
                     /protein_id="HSR40260.1"
                     /translation="MPSIVVSLTSSAYRYSAFLILLLLPFGMAAQSDTVQVEVVRINR
                     LDTITTIPADTAQAGPNKKRVWTVAGLHAGLYTGTLLLLNQAWYKDYPKSEWHTFNDA
                     GEWLQVDKVGHAWTAYQLSRASMASWKWAGLSKKQQIWLGGLSGFAFQTVIEFLDAHS
                     AEWGWSWADIAANTFGAGMLIGQELGWGEQRISFKFSFHKMTYTDPALNNRSDQLFGS
                     SLPERMLKDYNGQTYWLSANLKSFFKNSKLPPWLNISVGYGASGMFGGYDNVWTDEST
                     GVTYDFNHIPRVRQWYLAPDIDFTRIRTNSKFMRSVLFCLNAIKLPAPTLVYSKGKFT
                     VQGFYF"
     gene            3179..>4179
                     /locus_tag="VLL95_15230"
     CDS             3179..>4179
                     /locus_tag="VLL95_15230"
                     /EC_number="5.4.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF014877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016868 - intramolecular
                     phosphotransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HSR40261.1"
                     /translation="MDAAIKAKVDNWLAGNFDAETKAYITDALANNPDDLVEGFYKNL
                     EFGTGGLRGIMGVGTNRMNKYTVGMATQGYANYLKRVFGEGQRVAVAHDSRNNSRFFA
                     ETTANVLAANGFKVFLFEDLRPTPELSFTLRHLACKGGVVCTASHNPKEYNGYKAYWE
                     DGAQLVPPHDKNVIDEVDKISSVDDVKWSGGEANITIIGEEVDAAYTEMVKGLSVYPD
                     VCERQHDLKIVYTSIHGSGIKLVPRVLKRFGFDNLTIVEEQATPDGNFPTVHSPNPEE
                     KDAMSIGLSKAQSIDADILLGTDPDADRVGIGVKDSDGNWVLMNGNQTAVLAFNYMM"
BASE COUNT         1069 a          957 c         1131 g         1022 t
ORIGIN      
        1 atgtattccg ccccggcgag tgccaccatc tgcggaaata atttttccag cagcccggtt
       61 tggtagagca ggtccagacc aatggagggt ttgctgctca atacgatctt gttcagttcg
      121 tcggcaatgc gttctttcga aatgatgctg atgcggtggg catcctgctt tatggcctcc
      181 agcgtggtgg ggtgaatgct gaaatgcaat tgagaagcga agcgaatggc ccgcatcatg
      241 cgcaggggat cgtcgctgaa agttttgatg ggatcctgcg gggtgatgat gagcttttcc
      301 tgcaggtgct gcaggccatt gaaaggatcg atcaactggc catagtcgtc ctggttgagg
      361 ctgatggcga gtgcattgat ggtgaaatcg cggcgcagct ggtcgtcttc aatggtgccg
      421 ggctccactt gtggtttgcg gctgtggtgg ctgtagcttt ccttgcgggc gcctacaaat
      481 tcaatatcca ggtcggcgat gcggatatgc gccgtaccaa agtttttgaa aaaactgaca
      541 tgtggccggg gggtaaacat atcggccacg gcatgggcca gggcgatgcc atcgccggca
      601 caaacaatgt cggcatcctt ggtggggcgg cccagtattt tgtcgcgtac aaagccgcca
      661 atcacccatg cttccatgcc caggtgctgg gcccgggtgg cgattttttt gaagatgctg
      721 gcttcggccg ctaaaagatc aatttgcatg agcgggcaaa aatagctgaa gatgggggat
      781 taccagtttg gggagtctct gggccgtact cagtgttgct ttttcatatc cacgcctccc
      841 gaagtgattt tattttcatt cgaccgtagt cgattgaata cacagttttc gcaatagacg
      901 aagaagatag tggaatgcct aatcgccctg cattataaat acagtcttgt caaaattcct
      961 ggctttgagg tcctgttttc gaattccaaa attgcaattc gtatatccca aaatcttgaa
     1021 tttatcttca agtgcaaagc tgaagagatt aatgaagtct ggcactagcg tatttacctt
     1081 ttcacgccaa tccggattct catattcctg aagaggtacc tttaggaatg catatgccca
     1141 atcataatct gccccgtatt gtctagggct gggagttcct aaaataatat ctggtaaaaa
     1201 caatccagat agatcagtca tttcattgaa taacatttca tcattgcgat taagacctgc
     1261 tttttgaaag cgataggttt ctgttgtatt gggaaaataa tggatcaact caaagcgaat
     1321 tggcaaactg gcaaaatgat atcccgaata cagtttttca ggaaaaggac gcgtcttgag
     1381 ttggtcattg tttccattga agtaaagaac cttgtattct tcgttgcttc tcttgaattc
     1441 atatgagggc ccatactcat tctctggctg attaaagaag cagaagaaaa acagtatccc
     1501 ttgctttggt aatagtgaat cggaatagat tgctgaaacc tccttgaggt tcacttggcc
     1561 tagaaatacc atgggttcgt ttttgtaagt cggccaattc caatcagaag gcaggtcagg
     1621 cattcctccg aatttcgatt gacctgtaat cgtttttatg gcagtgtcaa ttatggggat
     1681 aaggctcggt tcgatcaggg attcaatttt taaaggttca tcccatggaa gccgcttcac
     1741 ctttgctacc aatgcgctac gatcttttag tatgggcgga attccaaatg gatattgttg
     1801 actgttagcc ttaaactgaa agatgacgat tagggccagg cctacaaaaa tggcacgcct
     1861 atattttccg aaaatgagac tcgattcaaa gccaatcatg aatgatatat tcattgggtt
     1921 catccaaaga aaacaattag gatgtaaaat cccgcaattg taaataattc attagtcaag
     1981 gaaagtcaga aataaaatcc ctgcaccgtg aatttgccct tggaatacac cagtgtaggg
     2041 gcaggcagtt tgatggcatt gaggcagaac aataccgacc gcatgaattt gctgttggtg
     2101 cgaatgcggg tgaagtcgat atcgggggcg aggtaccact ggcgcacccg gggtatgtgg
     2161 ttaaagtcgt aagtgacccc ggtggattca tcggtccaca cattgtcgta accgccaaac
     2221 atgccgctgg cgccatagcc cacggagatg ttgagccacg gcggaagctt gctgtttttg
     2281 aagaatgatt tcaggttggc gctgagccaa taggtttggc cgttgtagtc tttcagcatg
     2341 cgttcgggca ggctgctgcc aaagagctga tcgctgcggt tattgagggc aggatcggta
     2401 taggtcattt tgtgaaagga gaacttgaag ctgatgcgtt gttcgcccca gcccagttcc
     2461 tgcccaatga gcataccggc gccaaaggtg ttggcggcaa tatcggccca gctccagccc
     2521 cattcggcgc tgtgggcgtc caggaattcg ataacggttt ggaaggcaaa cccgctgagg
     2581 ccgcccaacc atatttgttg ttttttgctg aggccggccc atttccagct ggccatgctg
     2641 gcccggctga gttgataggc cgtccaggcg tggcctacct tatccacctg cagccattcg
     2701 ccggcatcgt tgaaagtgtg ccattctgat ttggggtaat ccttgtacca ggcctggttg
     2761 agcagcagca gggtacccgt gtacaggccg gcatgcaggc cggccacggt ccatacccgt
     2821 tttttgttgg ggcccgcctg ggcggtgtcg gcaggaatgg tggtgatggt atccagccgg
     2881 ttgatgcgta ccacttccac ctgcaccgtg tcggattgag cggccatgcc aaaaggaagc
     2941 agcaacaaaa tgagaaaggc tgaatagcgg tatgcggatg aagtgagtga cacaacgatg
     3001 ctgggcaatg tgatcaaagc tggttcaata aaaatggtat cgcaaacata cggcccgcgg
     3061 cgggaaacgg tttttttgtt cgatcaacgg aagcattttc agaatatctt agcccttctg
     3121 caatgcaaca ctaaaccgat tgaaccaaca acagtcaacc aacaacaatc aaccaaaaat
     3181 ggacgcagca atcaaagcga aagtggacaa ctggctggcg ggcaattttg acgccgaaac
     3241 aaaagcatac atcaccgatg cattggccaa taacccggat gacctggtag aaggctttta
     3301 taagaacctc gaatttggta ccggtggcct gcggggcatc atgggcgtgg gcaccaaccg
     3361 catgaacaaa tacaccgtgg gcatggccac gcagggatat gccaactacc tgaagcgggt
     3421 gtttggcgaa ggccagcggg tggcagtggc acacgacagc cgcaacaaca gccgcttttt
     3481 tgcagaaacc accgccaatg tgttagccgc taatgggttc aaggtctttt tgtttgaaga
     3541 cctgcggccc acgccggaac tgagttttac gctcaggcac ctggcttgca aaggcggtgt
     3601 ggtgtgtaca gccagccaca accccaaaga gtacaacgga tacaaagctt actgggaaga
     3661 tggcgcccaa ctggtgccgc cgcacgataa gaatgtgatt gatgaagtag acaagatcag
     3721 cagcgtggat gatgtgaagt ggagtggagg tgaagccaac atcaccatca taggtgagga
     3781 agtggatgcc gcctataccg aaatggtgaa gggcctgagc gtgtaccccg atgtatgtga
     3841 aagacaacac gacctgaaaa ttgtgtacac cagcattcac ggcagcggca ttaagctggt
     3901 accgcgggtg ctgaagcgtt ttggtttcga caacctgact atcgtagaag agcaggcgac
     3961 acccgatggg aatttcccta cggtgcacag ccccaacccc gaagaaaaag atgcaatgag
     4021 catcggcctc tccaaggcac aatccattga tgcagacata ttgcttggaa ctgatcctga
     4081 tgccgaccgc gtaggcattg gagtaaagga cagcgatggc aactgggtgc tcatgaacgg
     4141 caaccagaca gcggtgctgg cctttaacta catgatgga
//
LOCUS       DATIQF010000885         6574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_135743,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000885 DATIQF010000000
VERSION     DATIQF010000885.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6574
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135743"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2323)
                     /locus_tag="VLL95_15235"
     CDS             complement(<1..2323)
                     /locus_tag="VLL95_15235"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071702 - organic substance transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HSR40262.1"
                     /translation="MTLRRLLKGMVLPVMLLIGLVATAQETILVSGKVSDSKDGSPLI
                     GVSVTVKGTPQGTATDANGNFSLRAARGATLVFTYVGFATKEMTATGTEMTVFLEGAK
                     AALNEVVVIGYGRARKKDLTGAITTVSSKDFQSGNIPSPEQLIVGKVAGVQIVTGGSP
                     GAGSAIRIRGESSFGNGGASNDPLIVIDGVPVASSGIAGSPNALSMINPNDIESFNVL
                     KDASATAIYGNRASGGVIIITTKKGKRGKPQFNFSTNLALQTPSNTVDVLSTQEFKDF
                     VNQYGNASQKSRIGNASTVWQDEIYRNALASDNLLSVSGAAGKMPYRASLGYTYQDGI
                     LLNDNMKRLTGAISLSPKFFNNYLSVDVNLKATQSQFQFADQGAIGSAVGFDPTQSVL
                     SGKTEYGGYFEWLDPSTGKPNQLAPRNPVGLLNQRDDNSDVFRSIGNVQLDYKFHFLP
                     DLRANLNLGYDIARSEGTIFIPETAGSQVANNRPGTNNRYKQDKDMKLMEFYLNYVKD
                     LKSIKSKIDVMAGYSYQDFKTKDYFYPDFYADGSIRPGSLPNFPYNIPQYTLLSFYGR
                     AIYTYNDKYILTATYRRDASSKFSPDTRWGDFPSFAAAWKIGEENFLKNSKTISDLKL
                     RVGYGVTGQQEGIYEYGYLPVYSLSNNSALYQLGNNFYNMFRPGAYDANLKWEEQSQL
                     NIGVDFGFWNNRLSGSIDYFDKESYDLLATVPIPAGSNFSNQLLTNVGSIRSKGVEFT
                     VNAIPVKKEKLVWNVGFNITYNDVKVTKLSKVED"
     gene            complement(2563..5520)
                     /locus_tag="VLL95_15240"
     CDS             complement(2563..5520)
                     /locus_tag="VLL95_15240"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HSR40263.1"
                     /translation="MKRILFLVLLITSLGANAQLLTWSPSFPKETDAGVTITMDANFG
                     NKALLGFSGDVFVHIGCLTNTTTGATPWQFVKSTWGTSDINFKAQSLGSNKWSFTLSG
                     ASMRAYFGISNPAEFIRKIAILFRNGSGSVVQRNADGSDMFTPVYSAGLQTAITNPFR
                     QPTFNPIPETITKTVGQTIDIAARSSESATLRLLFNGNQVNSQAGATTISASPTISVA
                     GSQRIIAEADNGGSVKRDTLDFYVAPATEIAPLPPGVTDGINYNPNGTEVTLVLYAPN
                     KNNIVVIGDFNNWTAQSNFQLKRTPDNLRYWVTITGLTPGQEYAYQYLIDGNLKVADY
                     NCEKVLDPWNDQYINEAPYTDRYPNLKPYPTGLTTGIVSVLQPAKPAFNWSQATLNFQ
                     RPDKRNLVVYEMLVRDFVQRNDWKGVIDSLNYIAQLGVNAIHVMPWTEFEGNNSWGYN
                     PSYMFAADKFYGPDSRLKEFVDACHARGIAVIMDMVLNHQFGQSPMVQMYWDAAQGKP
                     AANSPWFNQEAKHPFNVGYDMNHEAPATIDFVERVMRHWLVNYKIDGFRWDLSKGFTQ
                     VFNSDAGAWSNFDQSRVNIWQRIYNQSQTISPNCYMILEHLGVDKEEATLANMGMLLW
                     GKMTDEFNENSMGYINGKGNFERAWHTTRWSGHNGNNTPHLMAYAESHDEERLSWKNR
                     NFGNSGNGAHNVKSLGVYAKRQESIAAFLMTIPGPKLMWQFGELAYDSSINMCNTLQI
                     GDCRVDPKPSAFRMPALPNFSPTQPFNGPFYNYNLTAENDANVRVDLRNRYSRIISLR
                     TKNASYLPTFVTNTLDFNVSGAVKWQWARSSSLGLTTVGNFDVVSQSGTVNFPFTGTW
                     YVYEQNVGAGSSLTSVNGNFSANGSSINVTSTSMTFNLPPGTFIILTDRVVPAAVTSY
                     TFTGNGNWSNAANWAGGLVPPTTIPPGVTVTINPAADGEAVIDVPVTFQSGANLNVSA
                     GKKLKVNGNLNRQ"
     gene            complement(5674..6414)
                     /locus_tag="VLL95_15245"
     CDS             complement(5674..6414)
                     /locus_tag="VLL95_15245"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HSR40264.1"
                     /translation="MKSAKNQAVAEKTPLLKDADKLVQQYPCVPLTVDCVIFGFEENK
                     LKVLLIRSDLEVYKGKWSLLGDVVRDNEELDDAAYRVLQERTGMSNVYLKQVHTFGGL
                     QRHPGGRVVTVAYASLLNIKHHELRITENELHWHNVRTVRDMAFDHREIIDTCYNWLQ
                     KSIQEHPLGFNLLPEKFSLRELQNLYEAILNIELDRRNFRKKFFSMDFLVDTGEYEAD
                     VKHRPGKLYQFDFGKYEKSKRKWIGIDF"
BASE COUNT         1551 a         1599 c         1671 g         1753 t
ORIGIN      
        1 ggtcttccac tttagaaagt ttggtaacct tcacatcgtt gtaagtaatg ttgaagccaa
       61 cattccaaac cagcttttcc ttcttaacag gtatagcgtt cacggtaaat tcaacacctt
      121 tagaacggat gctacccaca ttggtcagca attggttgct gaagttggaa cctgcaggaa
      181 taggcactgt tgccagcagg tcatatgatt ctttgtcgaa atagtcaatt gaaccactca
      241 aacggttgtt ccagaaaccg aagtcaacgc caatgttcaa ctggctttgc tcttcccatt
      301 tcaggttggc atcgtaagcg cccgggcgga acatgttgta gaagttattg cccagctggt
      361 acaacgcaga gttgttgctc aacgaataaa ccggcaggta accgtactca taaatacctt
      421 cctgctgacc ggtaacaccg tagccaacac gcagcttcag gtcactgatg gtcttgctgt
      481 ttttcaggaa gttctcttcg ccaatcttcc aggcagcagc aaagctgggg aagtcgcccc
      541 aacgtgtatc gggggagaac ttggagcttg cgtcacgacg ataggtagcg gtaagaatgt
      601 atttgtcgtt gtaggtataa atggcacgac cgtagaaaga gagcagcgtg tactgcggaa
      661 tgttgtaagg gaaattgggg aggcttcccg gacggatgct gccatcggca taaaaatcag
      721 gatagaaata atccttggtt ttgaaatcct ggtagctgta gcccgccatt acatcaatct
      781 tgctcttgat gctcttcagg tcttttacgt agttgaggta gaattccatc aacttcatgt
      841 ctttgtcctg cttgtacctg ttgttggtac cagggcggtt gttggccacc tggctgccgg
      901 cagtttcagg aatgaagatg gtgccttcac tacgtgcaat gtcataaccc aggttcaggt
      961 tggcacgcag gtcaggaagg aaatggaatt tatagtccag ctgcacgttg ccaatgctcc
     1021 ggaacacatc gctgttgtca tcccgctgat tcagcaagcc tacagggttc cgtggagcca
     1081 attgattggg tttgccagtg gatggatcga gccattcgaa atagccaccg tattctgtct
     1141 taccactgag caccgattgg gtaggatcaa agcctacagc tgatccaata gctccctggt
     1201 cggcaaattg aaactggctt tgtgtggctt tcaaattcac atccacactc aggtagttgt
     1261 tgaagaattt agggctcagg ctgatagcac ctgtcaaacg cttcatgttg tcattcagca
     1321 aaataccatc ctggtaagtg tagccgagtg atgcacggta tggcattttc ccagcagcgc
     1381 cactcacact caggaggttg tcgctggcca gtgcattgcg atagatttca tcctgccaaa
     1441 cggtgctggc atttccaatg cgtgactttt gtgaagcgtt tccgtattga ttcacgaaat
     1501 ctttgaactc ctgtgtgctc agcacatcta cggtattgct gggtgtttgc aaggccaggt
     1561 tggtactgaa gttgaactgg ggcttgccac gctttccttt tttggtggta atgatgataa
     1621 cgccaccgga agcacggtta ccgtaaatag cggtagccga ggcgtccttc aacacgttga
     1681 agctctcaat atcgttgggg ttgatcatgc tgagggcatt gggagaaccg gcaataccac
     1741 tgctggctac aggaactcca tcaataacga tgagcggatc gttggaagcg ccgccgttac
     1801 caaatgaact ttcaccacgt atgcggatgg cactaccagc accaggcgaa ccgcctgtta
     1861 caatttgaac acctgccact ttacccacaa tcagttgttc tggcgaggga atgttgcccg
     1921 attggaagtc tttggaagaa acggtagtga tggccccggt caggtctttt ttgcgtgcac
     1981 ggccgtaacc aattactact acttcgttca aagccgcctt ggcgccttcc aggaacactg
     2041 tcatttcagt acctgtggcg gtcatttctt ttgtggcaaa tcctacataa gtgaagacca
     2101 gggtagcgcc acgtgccgcc ctgagcgaga agttgccatt ggcatcggtt gccgtaccct
     2161 gcggggtacc cttcaccgtc accgatacgc caatgagtgg agatccgtct ttggaatcac
     2221 tcacttttcc ggataccaaa atggtttcct gcgctgtggc caccaggcct atcagcaaca
     2281 tgacaggaag gaccattcct ttcagcagtc gtcgtaaggt catacaattg aattttcgat
     2341 gttgagattt atgttgaaca gagatcaacc aatgggagga gggcaagcag agaaatcgtg
     2401 ttggtgtgca agcaatattc atggtaagac aagcagatgt cgcagttcgc tgcaacagtt
     2461 gtgtaatatt tacacggtaa aagtcgcagg attcagttgt ttggttttat gatttatgtc
     2521 accatttcat aaatagttgg gtacacaggg tgataccgca gcctattgtc tgtttaggtt
     2581 accgtttact tttaattttt tgcccgcaga aacgttcagg ttggcaccgc tttggaatgt
     2641 taccggtaca tcaataacgg cttctccgtc ggctgccggg ttgatcgtta ctgttacacc
     2701 aggaggaata gttgtgggcg gcaccagtcc ccctgcccag ttagcggcgt tgctccagtt
     2761 tccattgccg gtaaaagtgt agcttgtaac agcagcaggt accaccctgt cggtaaggat
     2821 aatgaaggtg ccgggcggca ggttaaaggt catgctggtg ctcgtcacgt tgatgctgct
     2881 gccattggcg ctgaagttgc cattcaccga agtgagcgat gagcctgccc ccacattttg
     2941 ttcataaaca taccaggtac cggtaaaggg gaaattgacg gtgccgcttt gtgataccac
     3001 atcaaagttg ccaaccgtgg tcagaccaag tgaggaactc ctggcccact gccatttcac
     3061 tgctccactc acattgaagt caagagtgtt agtaacaaag gtcggtaggt agctggcatt
     3121 cttggtacga agcgaaatga tcctgctgta tcggttgcgc aggtctaccc ttacattggc
     3181 atcgttttcc gcagtgaggt tgtagttgta aaacggaccg ttgaaaggtt gtgttggact
     3241 gaagttgggg agggccggca tgcggaatgc ggacggtttg ggatccaccc ggcaatcgcc
     3301 gatttggagg gtgttgcaca tgttgatgct gctgtcgtaa gccagttcac caaattgcca
     3361 catcaatttg ggtccgggta tggtcatcag gaaggctgct atgctttcct gtctttttgc
     3421 ataaacgccc aacgacttta cgttatgcgc accgtttcca ctgttgccaa aattcctgtt
     3481 tttccaggaa aggcgctcct catcatgact ttcggcgtag gccatcaggt ggggtgtatt
     3541 gttgccgtta tggccgctcc agcgggtggt gtgccatgca cgctcaaaat ttcctttgcc
     3601 gttgatgtaa cccatgctgt tttcgttgaa ctcatcggtc attttgcccc acaacagcat
     3661 gcccatgttt gccagggtag cttcttcctt atctacccca aggtgctcca atatcatata
     3721 gcaattgggc gaaatggttt gggactggtt atagatgcgc tgccagatgt tcaccctgct
     3781 ctggtcaaaa ttgctccagg caccggcatc cgaattgaat acctgcgtaa atcctttgct
     3841 caaatcccag cggaagccat cgatcttata gttcaccagc caatgccgca tcacccgctc
     3901 cacaaaatcg atggtggcgg gggcttcatg gttcatgtcg tagcccacat tgaaagggtg
     3961 tttggcttcc tggttaaacc atgggctgtt ggcagcaggt ttgccctggg ctgcatccca
     4021 gtacatttgc accatcgggc tttggccaaa ctggtggttc aataccatgt ccatgatcac
     4081 ggcgatgcca cgggcatggc aggcgtccac aaattctttc aaccggctgt cgggcccgta
     4141 gaatttatct gctgcgaaca tgtaagaagg attgtatccc cagctgttat tgccttcaaa
     4201 ttcggtccat ggcattacgt ggatggcatt cactcccaac tgggcgatat aattcaatga
     4261 gtcaatgacc cctttccagt cattgcgctg tacaaagtcg cgaaccagca tttcatacac
     4321 caccaggttg cgcttgtcgg gccgctggaa gttcaaggtg gcctggctcc agttaaaagc
     4381 aggctttgcc ggctgcaaaa cactcacaat acctgtggtg agcccggtag gatagggttt
     4441 caggttggga tatcggtcgg tatagggcgc ctcgttgatg tattgatcat tccagggatc
     4501 caacactttt tcgcaattgt agtccgccac tttcaggttt ccgtctatca ggtattgata
     4561 agcgtattcc tggcccggtg taagcccggt gatggtgacc caataccgca agttgtccgg
     4621 cgtccttttc aactggaaat tggactgggc cgtccagttg ttgaaatctc ctatcaccac
     4681 aatattgttc ttattgggcg catacaatac cagggtcacc tcggtgccgt tggggttgta
     4741 attgatccca tccgtaactc cgggaggcaa tggggcaatt tcagtagcag gggctacgta
     4801 aaaatccagg gtatctcgtt ttaccgaacc accattatcg gcttcggcga tgatgcgctg
     4861 gcttcctgcc acggaaatgg tgggtgatgc gctgatggtg gtggctcctg cctggctgtt
     4921 cacctggttg ccattgaaca gcaagcgcaa cgtggcgctt tcgctggaac gggcagcaat
     4981 gtcaatggtc tgacctactg tcttggtgat ggtctcaggg atggggttga aggtgggttg
     5041 cctgaatggg ttggtaattg ccgtttgaag cccggcactg tacaccggcg taaacatatc
     5101 agaaccgtcc gcattgcgct gcaccacgga gccacttccg tttctgaata ggatggcgat
     5161 tttacggatg aattcagcgg ggttgcttat tccaaaatag gctcgcatgc tggcaccgct
     5221 aagcgtaaac gaccatttat ttgaacccaa agactgggct ttgaagttga tatctgaagt
     5281 tccccaggtt gattttacaa attgccaggg ggtagcgcct gtggtagtat tggtaaggca
     5341 tccgatatga acaaacacat cacccgaaaa tcccaagagg gctttgttgc caaagttggc
     5401 atccatggta atggttaccc cggcatccgt ctccttggga aatgaaggag accaggtcag
     5461 caattgggca ttggccccca aagaggtaat cagtaagacc agaaacagga tccttttcat
     5521 agggcagaac atactggttt aggcttaaat gctttgtttg cgcaatcgtt tgcaaatctc
     5581 gggcaacaaa aatgtgtatt ttttacacta aatggaaaaa aaattcatct tttgcgcaaa
     5641 aattcacgat ttgattccac aataaagggg ggatcagaag tcaataccga tccactttcg
     5701 cttgctcttt tcgtacttgc caaagtcgaa ttggtacaat tttccgggcc ggtgttttac
     5761 atcggcctca tattcaccgg tgtctaccag gaagtccatg ctgaaaaatt tcttgcggaa
     5821 gttgcgccgg tcaagttcaa tattcaggat ggcttcatac aaattctgca gttcgcggag
     5881 tgaaaacttc tccggcaaca ggttgaagcc caaaggatgc tcctggatgc ttttctggag
     5941 ccagttgtaa caggtatcaa tgatttctcg gtggtcaaaa gccatgtctc gcaccgtacg
     6001 cacattgtgc cagtgcagtt cattttcagt gatcctcagt tcgtggtgct tgatgttgag
     6061 cagcgaggca taagccacgg taaccaccct gcccccgggg tggcgctgga gaccgccgaa
     6121 tgtatgcacc tgcttcaggt acacattgct catgccggtg cgttcctgca atacccggta
     6181 ggcagcgtca tccagttcct cgttatcccg caccacatcg cccagcagcg accatttccc
     6241 tttgtacacc tccaaatcgc tcctgatgag caaaaccttg agtttgtttt cttcaaaacc
     6301 aaaaatcaca cagtccacgg tcaacggcac acagggatac tgctgcacca gtttgtcagc
     6361 atccttcaga agcggggtct tttctgcaac agcttggttt ttggcacttt tcatggcaaa
     6421 tcttgatcgt caaaagggag aaaacgttgg ggcaaatcta agtgaatgtg tacaaattac
     6481 atttaacaac accccgctac cccatttcct ggtgcaggtg caaactgcag caccgctcaa
     6541 aaaatgcctc ttgcccaacc tgccaaacaa tgcc
//
LOCUS       DATIQF010000886         2844 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_272726,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000886 DATIQF010000000
VERSION     DATIQF010000886.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2844
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272726"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..432
                     /locus_tag="VLL95_15250"
     CDS             <1..432
                     /locus_tag="VLL95_15250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40265.1"
                     /translation="MPVFIDWNIGNFSVINKFELFSRWDYDWFRISYRMLDFYFLSRV
                     VSNVGDRTVFSYVIDTMMEDRFLLFLQEYHKVFPLMADEIRFLREAYRFFILNYVVKE
                     GNHFFSPEYAKKLRNEAFEIYLPSVDRDFDPEKIIRQLKLK"
     gene            464..1324
                     /locus_tag="VLL95_15255"
     CDS             464..1324
                     /locus_tag="VLL95_15255"
                     /inference="COORDINATES: protein motif:HMM:TIGR01460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HSR40266.1"
                     /translation="MEFMLEEFEPIASQYPVLLFDSYGVIKSSKGLVPGIERTFEWLK
                     AEKKEYYIITNDASRSPKQLAQGFHKMGLKAIQPERIISSGMLAKEFLNLKVRKGKVA
                     YLGTEDSAHYIEHRGLEAVPINDLTDEQMQEVVALVLLDDEGFDWVSGINKSVNLLRR
                     RAIPAIVANADGAYPVSSHDVSVAIGGLSWLIEKIVGKKFIRFGKPDAQIFMFAWEIL
                     QSRFPGIKKKDALMIGDTLQTDILGGNKFGLDTMLVLTGNTLPQDYLTRIMGTGITPT
                     FICHAAVVER"
     gene            1361..1822
                     /locus_tag="VLL95_15260"
     CDS             1361..1822
                     /locus_tag="VLL95_15260"
                     /inference="COORDINATES: protein motif:HMM:NF025939.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HSR40267.1"
                     /translation="MNVVEKVQSLGYTLPVLPASKGLYKRCLEVGNLLFVSGHISVNS
                     DGSAIKGKAGLDITDEDAKAAARQCGLAMLAALQEQGYLDRIKRVVKLLGMVNATPDY
                     TNHPIVINGCSELFAAVWGEENGIGTRSAVGTGSLPNNVAVEVEAIFELNP"
     gene            1836..>2844
                     /locus_tag="VLL95_15265"
     CDS             1836..>2844
                     /locus_tag="VLL95_15265"
                     /inference="COORDINATES: protein motif:HMM:NF013345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-TA family PLP-dependent enzyme"
                     /protein_id="HSR40268.1"
                     /translation="MLTVEAPSEKPWYQLDNVEELDTPALVIFPDRVKHNIQQAIRMV
                     GDVSRLRPHVKTHKCAEVARLMMEAGITKFKCATIAEAEMLCMEGAPDVLMAYQPGGP
                     KLKRFISLIRNYKGTRLSCLVDNVESAREQSELFEAAGLKVDVYIDLNVGMNRTGIAP
                     GEKALELYQLIGTLPGLSIKGLHAYDGHIREKDFEAKRAACDTAFAQVEALKEAIEAE
                     GMAAPVIIVGGSPSFSVHSARSGVECSPGTFIYWDFGYSQLCPEQPFLPAAVLVTRVI
                     SLPTGTRVCTDLGHKSVAAENEIGKRVNFLNAAGLTAVGQSEEHLVLETVEGHSFQPG
                     QG"
BASE COUNT          715 a          653 c          791 g          685 t
ORIGIN      
        1 atgccggtgt tcatcgattg gaacattggg aacttttcag tgatcaacaa gtttgaactg
       61 ttcagccgct gggattatga ttggtttcgc atcagctacc gcatgcttga tttctatttc
      121 ctgagcaggg tggtaagcaa cgtgggcgac agaaccgttt tcagttacgt gatagacacc
      181 atgatggaag acaggttcct gttgttcctg caggagtacc acaaggtatt tcctttgatg
      241 gccgatgaga tccggttttt gcgggaagcc tatcgttttt tcatcctgaa ttatgtagtg
      301 aaggaaggca atcacttctt cagccctgag tacgcgaaga aactgcgcaa tgaggctttt
      361 gaaatttacc tgccgtccgt tgatcgtgat tttgatccgg agaagatcat caggcaactc
      421 aaattgaaat aatcattttc ttaccaccaa tcgctgcttc tttatggaat tcatgctcga
      481 agaatttgaa cccatcgcat cgcagtatcc tgtgttgctt ttcgattcct atggcgttat
      541 taaaagttcc aaaggattgg tgccgggcat tgagcgcaca ttcgaatggc tgaaggccga
      601 gaagaaagag tactacatca ttacgaatga tgccagtcgc agccctaagc agttggcaca
      661 gggctttcac aaaatgggat tgaaagccat tcagccggag cgcatcatca gcagcggcat
      721 gctggccaaa gaattcctga acctaaaagt gcgcaaggga aaggtggcct acctcggtac
      781 cgaagacagt gcccattaca ttgaacatcg cggcctggaa gcagtgccca tcaatgacct
      841 gacagacgaa caaatgcagg aagtggtggc gttggtgctg ctggatgatg aagggtttga
      901 ttgggtgagc ggcatcaata agtcggtaaa cctgctgcgt cgccgggcca tcccggccat
      961 cgttgccaat gccgatggtg cttaccccgt gagtagtcac gatgtaagtg tggccatcgg
     1021 cggattgagc tggctgattg aaaaaattgt gggcaaaaaa ttcattcgct ttggcaaacc
     1081 agacgcccaa atattcatgt ttgcctggga gattttacag agccgctttc ccggtatcaa
     1141 aaagaaagat gccctgatga taggcgacac cttgcaaacg gatatcctgg gtggcaataa
     1201 gtttggactg gataccatgc tggtgctcac cggtaatacg ttgccgcagg attacctcac
     1261 ccgcatcatg ggaaccggca tcacacccac ttttatttgt cacgctgccg tagtagagcg
     1321 ttgaaagaag tcaatattta ctcttaaaat atcataacaa atgaatgttg tagaaaaggt
     1381 tcaatcgttg gggtacacgc tgcctgtgtt gcctgcgtca aaaggtttgt acaagcgttg
     1441 cctggaggta ggtaacctgt tgtttgtttc cgggcatatt tcggtaaaca gtgatggcag
     1501 cgccatcaaa ggaaaagccg ggttggacat aactgacgag gatgccaagg cagctgcccg
     1561 tcaatgcgga ctggccatgc tggcggcttt gcaggagcag gggtacctcg atcggattaa
     1621 gcgggtggtg aaattgctgg gcatggtaaa tgccacgcct gattacacca accatcctat
     1681 tgtcatcaat ggctgcagcg aattgtttgc cgcagtttgg ggagaggaaa atgggattgg
     1741 aacccgcagc gcggttggca cggggtcact gcccaacaat gttgcggtgg aagtggaagc
     1801 catatttgaa ctgaatccat aaacactgcc ttgccatgct tacagttgaa gctccttcgg
     1861 aaaagccctg gtaccagctt gataatgtag aagagttgga tactccggcc ctcgtcattt
     1921 ttcctgacag ggtgaaacac aatattcagc aggccatcag gatggtgggg gatgtcagcc
     1981 ggttgaggcc acacgtaaaa acgcataagt gcgccgaagt ggcgaggctg atgatggaag
     2041 ccggcatcac caaattcaaa tgcgccacca ttgccgaggc ggagatgttg tgcatggaag
     2101 gcgcccccga tgtgttgatg gcctaccagc ccggcggccc caaattgaaa cgcttcatca
     2161 gcctgatcag gaattacaag ggaacgcggt tgagctgcct cgtagacaat gtggaatctg
     2221 cccgggagca atccgaacta tttgaggccg ctggtttgaa agtggatgtg tacatcgacc
     2281 tgaatgtggg catgaaccgc accggcattg cgcccggtga aaaggctctc gaattgtatc
     2341 aattgattgg gactttacca ggactcagca tcaaaggatt gcatgcctac gacggccata
     2401 tccgggaaaa ggatttcgaa gccaagaggg ctgcctgcga cacagccttt gcccaggtgg
     2461 aagctttgaa agaggcgatt gaagcagaag gcatggcggc tccggtgatt attgtaggag
     2521 ggtcgccttc gttttcagtc cattcagcac gaagtggggt ggagtgcagc cccggcacct
     2581 ttatttattg ggattttggc tacagccagc tttgccccga gcagccattt cttccggcag
     2641 ccgtgttggt tacaagggtt atctctttgc ccaccggtac cagggtttgt acagacctcg
     2701 gccacaaatc ggtggcagcc gaaaacgaaa ttgggaagcg ggtaaatttt ttgaatgccg
     2761 caggcctcac agcggtcggt caaagcgaag agcacctcgt gctggaaacg gtagaaggtc
     2821 actctttcca gcccggacag ggtt
//
LOCUS       DATIQF010000887         3236 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_227004,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000887 DATIQF010000000
VERSION     DATIQF010000887.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3236
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227004"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..345
                     /locus_tag="VLL95_15270"
     CDS             <1..345
                     /locus_tag="VLL95_15270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40269.1"
                     /translation="DEKEIIQYARTGVGEWTELAEDYCDVTDAPVSLLISKLQQIGLT
                     PSDIHNIEYLEDKKVLQALPGGFRWLSRNQREDVIVYMETMAQLLEEKLLRQIDINVE
                     QLLTAKPEMVTA"
     gene            complement(353..1318)
                     /locus_tag="VLL95_15275"
     CDS             complement(353..1318)
                     /locus_tag="VLL95_15275"
                     /inference="COORDINATES: protein motif:HMM:NF014691.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HSR40270.1"
                     /translation="MWLEAVPHIKQLEWPLARLDSKKQQILAMRPLPAAAIHRIQETL
                     SLEWTYNSNSIEGNTLTLMETRAVLEDGITIKGKSLREHFEAVNHHEAIDWVSMLAKP
                     GFVFSEATVLDVHALVLDKIEKEFAGRYRNGAVRITGANFIPPNALKVPDLMAELISW
                     LNENPADLHPLQLATLFHHRFVHIHPFFDGNGRTIRLLFNLLLMREGYPPAIILRNDR
                     KKYYVALNQADEGNFEKLALLMSQALERSLDIYLSCLTDRADEYDSLSNIAQDEGVPY
                     NQEYLGLLARTGKIDAYKEGRVWYTSKAALQEYFDNRKRRRILNR"
     gene            1428..2261
                     /locus_tag="VLL95_15280"
     CDS             1428..2261
                     /locus_tag="VLL95_15280"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HSR40271.1"
                     /translation="MKRVSFAFCVLVAGLMTACNTNNITQDNSLKKYFDDNKVEGCFG
                     LFDNGQGHFTIYNMPRYRDSAYLPASTFKIFNSLVALGTGRIFSDTVVVPWDGVVRTG
                     PGGDTMTQWNKDMNMREAFAVSNVGFYQEMARRIGRDTMQKMLDSIGYGNKKIGPQID
                     RFWLDNTLKVTPDEQLGLVKKLYFKQLAFQNREQEIVKDLMIREKTDKYILAYKTGWG
                     KTEKGNQLGWMVGWIEENKHPYFFVLNVESPDPNIDMVTTRKKILEGILKEKGFFEGK
                     K"
     gene            2336..>3236
                     /locus_tag="VLL95_15285"
     CDS             2336..>3236
                     /locus_tag="VLL95_15285"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HSR40272.1"
                     /translation="MILFRSPVVLMFSLLIFFNSNAYSQTKTPKAVFIIVDGVPADVM
                     EKLDLPSFNAIKKAGGYTRTMVGGHPGTYTQTPTISAVGYNCVLTGVYAHKHNVWGND
                     ISAPNYQYPNLFRLLKEAQPHKTIGIFSSWQDNRTKLVGEGLTAAGNIHFDFEYDGLE
                     LDTMRLPHDKEKQYMHRIDDMVSDSAANAIRLSAPDLSWVYLEYTDDMGHRYGDSEAF
                     YTAVKYADAQVGKIWQAVQYRQQRFNEDWMIVITTDHGRDSSTGHNHGGQSPREKSGW
                     IYSSKRPLNERFSPDQSAIVDIMP"
BASE COUNT          853 a          860 c          814 g          709 t
ORIGIN      
        1 gacgaaaagg agatcatcca atatgcccgc accggcgtag gcgaatggac cgaactggcc
       61 gaagactact gcgacgttac cgacgcgccg gtcagcctgc tcatcagcaa gttgcagcaa
      121 ataggtctca cgcccagcga tattcacaac atagaatacc tcgaagacaa gaaagtgctg
      181 caggcattgc ccggtggctt ccgctggctc agccgcaacc aacgcgaaga tgtgattgtg
      241 tacatggaaa cgatggcgca attgctggaa gagaaattgc tccggcaaat tgacatcaac
      301 gtggagcaat tgctgacagc caaacccgaa atggttaccg cctgacaagg gcttatctat
      361 tcaaaatccg cctgcgtttg cggttgtcaa aatactcctg caaggccgct ttggaagtgt
      421 accaaacgcg gccttctttg taagcgtcaa ttttaccggt acgggccagc aggcccaggt
      481 attcctggtt gtaaggcact ccttcatcct gggcaatatt gcttaatgag tcatattcat
      541 cggcacgatc cgtaaggcaa ctgaggtaaa tatccaacga acgctccagc gcctggctca
      601 tcagcaaagc cagcttttcg aaattccctt catcagcctg gttcaaagcg acgtaatatt
      661 tttttctgtc gttgcgcaaa atgatggcag gcggataacc ttcccgcatc agcagcaggt
      721 tgaacagcaa ccgaatggtg cgaccattcc catcgaaaaa cgggtggata tgcacaaagc
      781 gatgatggaa aagcgttgcc agttgcaacg gatgcaggtc tgccgggttt tcattcagcc
      841 acgaaatcag ttctgccatc aggtcgggca ctttcaaggc attgggtgga atgaagttgg
      901 caccggtaat gcgcacggcc ccattgcggt agcggccggc aaattccttt tcgatcttgt
      961 ccagcaccag tgcatgcaca tccagcacgg tggcttccga aaaaacaaaa cccggcttgg
     1021 ccagcatgga tacccagtca atcgcttcat ggtggttcac cgcttcaaaa tgctcccgca
     1081 ggcttttgcc cttaatggta atgccatctt ccagcaccgc ccgtgtttcc atcagggtaa
     1141 gtgtgttgcc ttctatgctg ttggagttgt aggtccattc cagcgacagt gtttcctgta
     1201 tgcgatggat ggcagcagca ggcaaaggcc gcatagcaag aatctgttgc ttcttgctgt
     1261 ccagcctggc caacggccat tccagttgtt tgatatgggg cactgcttcc aaccacatgg
     1321 cccaaaagta cttaatatcg tttgcaaatt ctattctctt acccgatatt aagcaaagtt
     1381 caacttttct tgccaccgat gccgcattca ctgacatttg caccgctatg aaaagagtga
     1441 gttttgcttt ctgtgtgctg gtggccgggt tgatgaccgc ctgcaatacc aacaatatta
     1501 cccaggacaa cagcctgaag aaatacttcg acgacaacaa agtggagggc tgctttggct
     1561 tgttcgacaa tgggcaggga cattttacca tttacaacat gccccgctat cgcgacagtg
     1621 cctacctgcc ggcttccacc ttcaagatct tcaactcatt ggtggcgctg ggtaccggcc
     1681 gcattttcag cgacacggtt gtggtgccct gggatggcgt ggtgcgcacc ggtcccggcg
     1741 gcgacaccat gacgcagtgg aacaaagaca tgaacatgcg ggaagcattt gccgtgagca
     1801 atgtgggctt ctaccaggaa atggcccgcc gcattggccg cgataccatg cagaaaatgc
     1861 tcgacagcat tggctatggc aacaaaaaga tcgggccaca gatcgatcgt ttctggctcg
     1921 acaatacact gaaggtcacc cctgacgagc aactgggact ggtgaagaaa ttgtacttca
     1981 aacaactcgc cttccagaac cgcgaacagg aaatagtgaa agacctgatg atccgcgaaa
     2041 agaccgacaa gtacatcctg gcttacaaga ccggctgggg taaaacagaa aaaggaaatc
     2101 agctcggctg gatggtgggc tggatcgaag aaaacaagca cccctatttc tttgtgctga
     2161 atgtggaaag ccccgatccg aatatcgaca tggtgaccac ccggaaaaaa atcctggaag
     2221 gcatcctgaa agagaaaggg ttttttgaag gaaagaaata gtttcaaaaa aataaacgac
     2281 agcggagtcc tacacggctc cgctttttct tttcttgcag gaagaattgc ttaccatgat
     2341 attgtttcgt tcacccgttg tgctgatgtt ttcattgctg attttcttca acagcaatgc
     2401 ctacagtcaa accaaaacgc ccaaagcggt attcatcatt gtagacggcg tgcccgccga
     2461 tgtgatggaa aagctggacc tgccgagttt caatgccatc aaaaaagcag ggggttatac
     2521 ccgcaccatg gtgggtggtc acccgggtac gtatacacaa acgccaacca tttcggcggt
     2581 ggggtacaac tgtgtgctca ctggcgtgta tgcccacaag cacaacgtgt ggggcaatga
     2641 tatttcggcc cccaactacc aataccccaa cctgtttcgc ctgctgaaag aagcacagcc
     2701 acataaaacg atcggcatct tctcctcctg gcaggacaac cgcaccaaac tggtgggcga
     2761 aggccttact gccgccggca atatccattt cgattttgaa tacgatggac tggaactgga
     2821 caccatgcgc ctgccccacg acaaagagaa acaatacatg caccgcattg atgacatggt
     2881 gagcgacagt gcggcaaacg ccatccggct atccgccccc gacctgagct gggtgtacct
     2941 ggagtacacc gatgacatgg gccaccgcta tggcgacagc gaagcttttt acactgctgt
     3001 aaaatatgcc gatgcgcaag tgggcaagat ctggcaggcg gtgcaatacc ggcagcaacg
     3061 attcaacgaa gactggatga tcgtgatcac taccgatcat ggcagagatt catcaaccgg
     3121 gcacaaccac ggcggtcaat cgccccgcga aaaaagcggc tggatctaca gcagcaagcg
     3181 accgctgaac gaacgattct ccccagatca atcggccatt gtcgacatca tgccca
//
LOCUS       DATIQF010000888         1560 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_272770,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000888 DATIQF010000000
VERSION     DATIQF010000888.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272770"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..307
                     /locus_tag="VLL95_15290"
     CDS             <1..307
                     /locus_tag="VLL95_15290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40273.1"
                     /translation="KFVGALIVPGFPTLREWMRKNNIPFTSEAEAIRHPQVLELYQKL
                     VESFNVFFNHVEQVKKFELLPREWSIDSGEMTPTLKIKRKVVMEKYKDAVDHIYAGT"
     gene            complement(404..>1560)
                     /locus_tag="VLL95_15295"
     CDS             complement(404..>1560)
                     /locus_tag="VLL95_15295"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HSR40274.1"
                     /translation="APSAVVGGANPNPYVNGPLARVTNQTSNYNFPIGKPNGPYQEYR
                     PAVVQPQAATTITYNSEYFAYLPGVSPYLPYQRVFMGILNTEIWEINRSPNNTTDFAK
                     VGLIYINPNINSHWTDVEPCATCNVAIVKRYAEFGSTWYFTNGQSASSGFNMSIPEAR
                     AWNDTHGMIWSKSISSFSPFTFGYDLPIVLGTGSGNQNTVTIPLSQKLVNFDGELVNT
                     NDAQLTWNVMENKGIEVFELQHSFDGRVFSKVGTVTPGADRQYEYLDRNLANGTHHYR
                     LALKDKQGNVAYSKVVKLSIGKVYTMIRKLEATVVRNEIVVNVFSATTQKMDARIVTV
                     DGRPVWAARIGLGHGENRAKLNSSYLAQGLYFLQLTTEDGAKATFKLMRE"
BASE COUNT          385 a          375 c          384 g          416 t
ORIGIN      
        1 gaaattcgta ggcgccctca ttgtacccgg cttccccacc ttgcgtgagt ggatgcgcaa
       61 aaacaatatc ccctttactt cagaagcaga ggcgattcgg catccgcaag tgctcgaact
      121 ctatcaaaag ctggtggaat ctttcaacgt attctttaac catgtggagc aggtcaaaaa
      181 atttgaactg ttgccgagag agtggagtat cgatagcggt gaaatgacac ccacgttaaa
      241 aatcaaacgg aaagtggtca tggaaaaata caaggatgcg gtagaccata tttatgccgg
      301 cacttagcag taaatgatta gaagttcttt aaaacaaaaa ccccaggctg aaatgaatca
      361 aagccggggt ttttttatct ggagagagca ccagcgtttt tgattactcc cgcatcaact
      421 tgaaggtagc ttttgcgcca tcttctgtag ttaattgaag gaagtaaagt ccctgggcca
      481 ggtaggagct gttcaatttg gcccggtttt caccatggcc caagccgatc ctggcagccc
      541 atactgggcg tccgtctacg gtgacgatgc gggcatccat tttctgggtg gtggccgaga
      601 acacattcac cacaatttcg ttgcgcacca ccgtggcctc caatttcctg atcatggtgt
      661 ataccttgcc aattgaaagt ttcaccactt tgctgtacgc tacattaccc tgtttgtctt
      721 tcaaggcaag gcggtaatga tgcgttccat tcgccaggtt gcggtcgagg tattcatatt
      781 gcctgtcagc accaggtgtc accgtgccca ctttgctgaa caccctgccg tcaaagctgt
      841 gttgcagttc aaacacttcg atacccttgt tttccatcac attccaggtc agttgggcat
      901 cgtttgtatt gacgagctcg ccatcgaagt tgaccagctt ctgcgacaat ggaattgtca
      961 ctgtattctg attgccactg ccggtaccca gcacgatagg caaatcgtag ccaaacgtga
     1021 atggactgaa actggagatt gacttgctcc atatcatacc atgcgtatca ttccatgccc
     1081 tggcttcagg aattgacatg ttgaagcccg aactggccga ctgaccattg gtgaaatacc
     1141 aggtacttcc aaattctgca taacgcttca ctatggccac attgcaggta gcacaaggct
     1201 ctacatcagt ccagtgcgaa ttgatgttgg ggttaatgta tatcaagcca actttcgcga
     1261 aatccgtggt attgttgggc gacctgttga tctcccaaat ttccgtgtta agaatgccca
     1321 taaataccct ctggtatggc aggtatggac ttacgcccgg cagataggca aaatattcac
     1381 tgttgtaagt gatggtggtg gctgcctggg gttgtaccac ggcagggcgg tactcctggt
     1441 acgggccatt gggcttacca atcgggaagt tgtaattaga tgtttgattg gttacacgag
     1501 ccaatggacc attcacgtat gggttggggt tggcccctcc tactactgcg gatggcgcag
//
LOCUS       DATIQF010000889         4957 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_120764,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000889 DATIQF010000000
VERSION     DATIQF010000889.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4957
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120764"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1234)
                     /locus_tag="VLL95_15300"
     CDS             complement(<1..1234)
                     /locus_tag="VLL95_15300"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HSR40275.1"
                     /translation="MRTVLMIIGISALTSVASVWAVGKWYSGSSGSGVQETGKLPANY
                     AAFYENGNGGGQLPVDFTAAATASTPAVVHIKTKINARTVTNQRQRSPFADLFGEDFF
                     GDFFGAPRSMTIPEQRASGSGVVISKDGYIVTNNHVIENADEINVTLPNKKSFKAELV
                     GADPSSDLAVLKIPGNNLPYVVWGNSDDVKLGQWVLAIGYPWSLDVTVTAGIVSAKAR
                     TLGLNGRKSQTPIESFIQTDAAVNQGNSGGALVDTEGKLVGINSAIASQTGSYAGYSY
                     AIPVNIVRKITGDLIKFGAVQRAYLGIEYMPDDAPEEIFKKEGIVQGEGVYVRNVPEG
                     GAAAAGGIKKGDYITAINGVKVSSGSEMVEQVANYKPGDKIAITVNRDGVSKVINVTL
                     KNKAGNTDIVKNDASSELK"
     gene            complement(1430..2428)
                     /locus_tag="VLL95_15305"
     CDS             complement(1430..2428)
                     /locus_tag="VLL95_15305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003995 - acyl-CoA dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0008218 - bioluminescence [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA reductase"
                     /protein_id="HSR40276.1"
                     /translation="MNLNQRIEILVQLGEYLSTEEMEWQMAREKATRENGWFVPEFIN
                     LAITNIKEQFLSQGTLTRFADQYPGIADQTKDKRLGIVMAGNIPLVGFHDFLCGFLSG
                     YQLLLKPSSKDEVLIKHLVQVIKTWHPDLENLILFADQLKGCDAYIATGSNNSGRYFE
                     YYFRNYPSIIRKNRTSIAVLTGDETEQQLASLADDMMLYFGLGCRNVSKIYVPEGYDF
                     QRLLAALKPYKWMADHNKYRNNYDYNLALHILNNKFYMTDGTLLLIENESLFSPIAQV
                     HYEFYRENPVTRLRTNHSEEIQCISGEGGIPLGLVQAPAINDFADGIDTMTFLTGL"
     gene            2487..2834
                     /locus_tag="VLL95_15310"
     CDS             2487..2834
                     /locus_tag="VLL95_15310"
                     /inference="COORDINATES: protein motif:HMM:NF024634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HSR40277.1"
                     /translation="MAIKITEECINCGACEPECPNNAIYEGGVEWAISDGTTVKGSYT
                     LLDGSATDADAKHEPLSTDTYYIVPNKCTECQGFHEEPQCAAVCPVDCCVPDEAYRET
                     VDELMAKKTRLHI"
     gene            3052..4065
                     /locus_tag="VLL95_15315"
     CDS             3052..4065
                     /locus_tag="VLL95_15315"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: protein motif:HMM:NF002378.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HSR40278.1"
                     /translation="MSKPVIAFVTGGTSGEAKVSYKSAITIQANIDTDKYEYYTIDIR
                     SDGWWYRNEAGVEMPVDRNDFSISVDGRKVTFDAVLIGIHGTPGEDGKLQGYFDMLGL
                     PYTSCDATASAITFNKRYTVAVAGMSGIRVSRSFHYFKGQQVDEDQVATTLRFPVFVK
                     PANGGSSIGMSKVPDKSGIAEAVAKAFKEDDQILIEEFVSGREFTIGVCRINGKVITL
                     PMTEVISENYFFDYEAKYEGKSREITPAQLEESKAEKIRAAAIKIYHVFNCNGVIRID
                     FIYNEEADEPYMLEVNTIPGQSDASIVPQQVKALGWTLKSFYSGLIEDALTRTKKEAK
                     AFQ"
     gene            4122..4946
                     /locus_tag="VLL95_15320"
     CDS             4122..4946
                     /locus_tag="VLL95_15320"
                     /inference="COORDINATES: protein motif:HMM:NF015734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HSR40279.1"
                     /translation="MFKFITRQSLLVNVIAAVALVLLLLLGTLWMLGFITHHGQYEKV
                     PSVTGLSISKATEALESKGFAVEVQDSVWDPLQQPQVVLKQMPYGDEMVKARRTIYLT
                     VNRSQPPLIEMPNLVGLSFRNAELYLRQMGLKLGDTLRKPDIAKDAVLEQLYNGVAIR
                     PGTKIFQGSTIGFVLGSGIGLDEIEVPMLIGLTFSEVQTMLSGMGLQSGALIIDTDVK
                     DTAQAFIYKQSPSVREQLPDGTIQKNRIRPGQSIDLWLGTTRVVPAIDSLPAPAEQ"
BASE COUNT         1241 a         1124 c         1189 g         1403 t
ORIGIN      
        1 ctttcaattc tgaagaagcg tcattcttca caatgtcagt gttcccagct ttgttcttca
       61 gtgtcacgtt gatcactttg ctcaccccgt ccctgttaac ggtgatggca atcttgtcgc
      121 cgggcttgta attggctacc tgttcaacca tttctgaacc ggaggatact tttacgccgt
      181 tgatggctgt gatatagtct cctttcttga tgccgcctgc cgctgctgcg ccaccttctg
      241 gcacgttgcg tacatacact ccttcacctt gtacaatgcc ctctttctta aatatttctt
      301 cgggggcatc atcgggcatg tattcgatac cgaggtaggc ccgctgcacg gctccaaact
      361 tgatcaagtc gccggttatt ttccgtacaa tgtttacagg tattgcgtag ctgtaaccgg
      421 cgtaagagcc tgtttgcgaa gcaatggccg agttaatgcc caccagtttc ccttcagtat
      481 caaccaaggc cccaccgctg ttgccctggt tcacggcggc atcagtttga atgaaagatt
      541 caatcggcgt ttggctcttc ctgccgttca ggccgagggt acgggcttta gcgcttacaa
      601 tgcccgcagt tactgttacg tccaggctcc acggataacc gattgctagc acccactggc
      661 ccagtttgac gtcatcgcta ttgccccaga ctacataagg gaggttgttg ccaggaattt
      721 tcagcaccgc cagatcgctg ctgggatcgg cgccaaccag ttctgccttg aatgattttt
      781 tgttgggcag ggttacgttg atctcatcgg cattttcaat tacatggttg ttggtaacaa
      841 tgtagccgtc cttagaaatc accacgccag atccacttgc tctttgttcg ggaatggtca
      901 tgctgcgggg tgcaccaaaa aaatcgccga aaaagtcctc accaaataaa tcggcgaaag
      961 gacttctttg ccgttggttg gttacggtac gggcattgat ttttgttttt atatggacca
     1021 ctgccggagt tgaggctgtt gccgctgccg taaaatctac cggcaattgc ccgccgccgt
     1081 ttccgttttc gtaaaaggcc gcatagttgg ccggcagttt gccagtttcc tgaacgccac
     1141 taccggaaga cccgctatac catttgccta ctgcccaaac acttgccact gaggtaagtg
     1201 cactgatacc aataatcatc agaacagttc tcattttcat aatctcagct tttctttttg
     1261 tcacgaaatt gttcgtaaat ctaatgaccg ggaaagttat caattgaaaa tacatttata
     1321 aaatactgac acttaaccgg catttaacac acccatcaac tgctgtgccg caccatcttt
     1381 ctgcattttt gacagcggca agattccacc atttcattcc tttggcattt caaaggcccg
     1441 tcaggaatgt cattgtgtct ataccatccg caaaatcgtt gatggcgggc gcttgtacca
     1501 gccccagtgg tattccacct tcccctgaaa tacattgtat ttcttcggaa tgattggtgc
     1561 gaagccgggt aacagggttc tcccggtaaa attcatagtg cacctgggca atgggggaga
     1621 acaacgattc attttcgatg agcaacaagg tgccatcggt catgtagaac ttattgttca
     1681 gaatgtgaag cgccaggttg taatcgtaat tgttccggta tttgttgtgg tccgccatcc
     1741 atttgtacgg cttcagcgca gccaacagcc tttgaaagtc gtagccttcg ggcacgtaga
     1801 ttttggatac gtttctgcaa cccaatccaa aatacagcat catgtcatcg gccagcgagg
     1861 ccaactgctg ttctgtttcg tcgccagtta acaccgctat tgaggtgcgg ttttttcgaa
     1921 tgatactcgg atagttcctg aagtaatatt caaaatacct gcccgagtta ttgcttcctg
     1981 tggcgatata ggcatcgcag cctttcaatt gatccgcaaa gagaatcagg ttttccaaat
     2041 ccggatgcca ggtttttatt acctgcacca ggtgtttgat caggacttca tcctttgaag
     2101 aaggcttcag gagcaattgg taaccggaga gaaaaccgca caggaaatcg tggaatccta
     2161 ccagcggaat attgccggcc attactattc cgagacgttt gtctttggtc tggtcggcaa
     2221 tgccggggta ctggtctgca aaccgggtaa gggtgccttg ggatagaaat tgctctttga
     2281 tattggtaat ggccaggttt atgaattctg gcacaaacca gccattttcc cgggtggctt
     2341 tttccctggc catttgccat tccatttcct ctgtcgaaag atattcaccc agttgaacaa
     2401 gtatttcaat tcgttgattc agattcactt ttgtcgtcct atttttgaga gaacaaaagt
     2461 atatttgaat caaatcaact taagttatgg ctatcaaaat aaccgaagaa tgcatcaact
     2521 gtggtgcttg cgaaccagaa tgtccgaata atgccattta cgaaggtggc gtggaatggg
     2581 ctattagcga tggaacaact gttaagggtt catacacgct gcttgacggt tctgccacag
     2641 atgctgatgc caagcatgag cctctgagca ctgacaccta ttacattgtt ccaaacaagt
     2701 gcacagagtg ccagggcttt cacgaggagc cccagtgtgc tgccgtttgt cctgtagatt
     2761 gctgcgtacc tgacgaagca tatcgtgaaa ctgttgacga actgatggcc aagaaaacac
     2821 gtttgcatat ctgatttgtg cataattaaa atcaaccgtt ttcttgattt ttaaaatcat
     2881 cagatctaac tttatttcat aaacgaaggg gtaaaaccct gaaaaccggc aggtgatatt
     2941 tcctgtcaaa aaaggtgaag gatcatgacc ttcaccttta ttttttgcac ctcctgtatt
     3001 ttgtttttag tgctttggct ttaggtcttt tctttgccaa aactgttgtg catgtcaaaa
     3061 cctgttattg catttgttac cggaggtacc agcggagaag ccaaagtatc ctacaaaagt
     3121 gccatcacta ttcaagcgaa catcgatacg gacaagtatg aatactatac cattgatata
     3181 aggtctgacg gatggtggta tagaaatgag gccggtgtgg aaatgccagt cgatagaaat
     3241 gatttttcca tatcagtgga tgggcgcaag gttacatttg atgcggttct tattggcatt
     3301 cacggaactc cgggagagga tggcaaactg cagggttatt tcgacatgct gggcttgcct
     3361 tataccagct gcgatgcaac tgcttcagcc atcactttca ataaacgcta tacagtggct
     3421 gtggcgggta tgagtggtat cagggtgtca cgaagcttcc attacttcaa aggccagcag
     3481 gtggatgagg accaggttgc cacaacccta cggtttcctg ttttcgtgaa acctgctaat
     3541 ggcggaagtt ccattggtat gagcaaggtg cccgataaga gcggcattgc agaggcagtg
     3601 gctaaggcat tcaaggagga tgatcagatc ttgatcgaag aatttgtatc gggtcgtgaa
     3661 ttcaccattg gggtttgccg tatcaatggc aaagtgatca cgctgccaat gacagaggtg
     3721 atcagtgaaa actatttctt cgactacgaa gccaaatatg aaggcaaaag ccgtgaaata
     3781 acgccggctc agttggagga atcaaaggcc gaaaaaataa gggctgcggc cattaagatc
     3841 taccatgttt ttaattgcaa tggggtgata cggattgact tcatttataa cgaggaggct
     3901 gatgaaccat acatgctgga ggtaaacacg attcccggcc aaagtgatgc cagtattgta
     3961 ccccagcagg ttaaagcgct gggctggact ttgaaatcat tttattccgg tcttattgaa
     4021 gatgccctca cccgtactaa aaaagaggca aaagcgtttc aatagcctta gttttattgc
     4081 tttaattagc ggcctatatt ttttgagtaa accggatttt tgtgttcaag tttattacga
     4141 gacaatcctt attggtaaat gttattgcag cggttgcctt ggtgctattg cttttgttgg
     4201 gtactttatg gatgctcggt ttcattacgc atcatggcca atatgaaaag gtgcctagcg
     4261 taacagggct ctccatttcc aaggccacgg aggcgctgga aagcaaggga tttgcggttg
     4321 aggttcagga ttctgtttgg gatccattgc aacagccaca ggttgtgttg aagcaaatgc
     4381 cttatggaga cgaaatggtg aaagcccggc ggacaattta tcttacagtg aacaggtcgc
     4441 agccgccttt aatcgaaatg cccaatcttg tcgggctttc tttcaggaat gctgaattgt
     4501 atttgcggca aatgggattg aaactgggcg acactttgcg caagccggat attgccaaag
     4561 atgctgtgct ggagcaactc tacaatggtg tagccattcg tcccggcacc aaaatattcc
     4621 agggaagcac tatcggattt gtgcttggca gtggtattgg attggatgag attgaagtgc
     4681 caatgctcat cgggctaacc tttagcgaag tacaaaccat gctgtctggc atgggcctgc
     4741 agtctggcgc cctcatcatt gacacagatg taaaggatac agcacaagct ttcatttaca
     4801 agcaaagccc ttccgtaaga gagcagttgc ctgatggtac gattcaaaaa aaccggattc
     4861 gtccggggca gagtattgat ctgtggctgg gtaccaccag ggtagtgcct gccattgatt
     4921 cgcttcctgc tcctgcggaa caataatttt gatacga
//
LOCUS       DATIQF010000890         3034 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_287460,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000890 DATIQF010000000
VERSION     DATIQF010000890.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3034
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287460"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1445
                     /locus_tag="VLL95_15325"
     CDS             <1..1445
                     /locus_tag="VLL95_15325"
                     /inference="COORDINATES: protein motif:HMM:NF025253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tail fiber domain-containing protein"
                     /protein_id="HSR40280.1"
                     /translation="DSGMATHLGYKAGWQAPHYSNTAFGTEALSAPSDEMGNTAFGFW
                     AAKDTRSGNNNTAMGQYSLSKNISGSRNTAQGSASLFNNVSGSRNTAIGHWALYISDT
                     ANDNTAIGSQALWINKASNNTAVGGQAMVNNTTGSMNTAVGWSAGSIINTGNGNTFLG
                     YEANANVGTRINATAIGARAYADCNNCLILGSVSGVNNASSSVRVGIGTNNPSALLTL
                     NSKIGSSNINFEVDDTVRGSLYATNGSFMDMVLATAFDNQTGRIRLNAGGTQFKISPL
                     GTVTIGPSGMVGPYTLLVSDSDKDPMIQFQKGATDKGFVQIVNDDIKIGTNNSNDLGS
                     FLIRTNGADRVKVDPSGNVGVGTSSPTVKFQVGANGDGTVARANSWTTFSDERYKTQI
                     VSIDHALDKLDQIGGYYYQWKEGQDQSRQAGLIAQEVEKVLPEIVQTDEAGYKSVDYG
                     KMNALLIQAIKEQQKEIEELKAILKSKKRK"
     gene            1623..>3034
                     /locus_tag="VLL95_15330"
     CDS             1623..>3034
                     /locus_tag="VLL95_15330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40281.1"
                     /translation="MKALLTVFIIMACMGPVLSQSVGVGTQTPNTSAMLDISSNTKGL
                     LIPRMTENEKAQISSPATGLLIWQTDGTPGFYYNAGTPQGPKWFMLSVADASNWSING
                     NDDINPAVHFLGTTKAQPLRFRVNNIWAGSIDSATGTFIGFRTGQNDLQGNVAFGKKA
                     LAANVNGVGLTAIGNAALQNNQGGSNNTAVGDAALKGNTTGVWNTALGAQSMMNNATG
                     SENVAVGRYTMVDNSGNNNVSVGVYSMIKNSGNDNVAIGYYSQFLNETGAQNVAVGSN
                     TLRSNSTGSSNVAIGFSALHTNDTGNRNVEIGFFALRENKENDNTAVGYYALRNNSSG
                     IQNTAMGNQALFSNTQGSYNTAVGYQTLNKSQAHWNTAMGSGAMRMNWSGDDNSAFGL
                     GALQENTSGGSNTALGVYALRENTTGNNNVAIGRSAGTFNISGNYNTFVGASSNASGT
                     RTNVTTIGYTALAECSNCVI"
BASE COUNT          913 a          679 c          749 g          693 t
ORIGIN      
        1 tagacagtgg catggccacg catttggggt acaaggccgg ctggcaggct ccgcattatt
       61 ccaacacagc ctttggcacc gaggccttat ctgccccatc tgatgaaatg ggaaacactg
      121 cttttggctt ttgggcggcc aaagacaccc gatctggtaa caataacaca gccatgggac
      181 aatatagcct gagcaaaaac atatcaggca gcaggaatac agcccaaggt tctgcttctt
      241 tattcaataa tgtatctggc agccgaaata ctgccattgg tcattgggct ttatatatat
      301 cagatacagc taatgacaac accgctattg gatcacaggc attatggatc aacaaagcaa
      361 gcaacaatac agctgtaggt ggccaggcaa tggtcaacaa caccactggt tctatgaata
      421 cggcagttgg ctggagtgcc ggaagtatca tcaataccgg caatggtaat acctttcttg
      481 gttatgaggc caacgcaaat gtgggcacca ggataaatgc taccgctatt ggcgcaagag
      541 cctatgccga ctgtaacaac tgcctcatac ttgggtcagt ttcaggagta aacaatgcat
      601 cttcttctgt aagggtgggc attggcacga ataaccctag tgcactgctt accctaaact
      661 caaagattgg atcaagtaat atcaatttcg aagtagatga tacggttagg ggatcactct
      721 acgctaccaa tggttcattt atggacatgg tattggctac cgctttcgac aaccaaaccg
      781 gtagaatacg gctgaatgct ggaggtaccc aatttaagat cagcccgctt ggaacggtca
      841 ccattggtcc ttcgggcatg gttggccctt atacattatt ggtaagcgat agcgataaag
      901 accccatgat ccaattccag aaaggagcca ctgataaggg ttttgtgcaa atcgtaaatg
      961 atgatatcaa gattggtaca aacaatagca atgatctcgg cagcttttta attcgcacga
     1021 atggcgctga ccgggtaaag gttgatccca gtggaaatgt gggcgttggt acatccagcc
     1081 caacagtgaa atttcaagtt ggggccaatg gtgacggcac agtagccagg gccaactcgt
     1141 ggaccacctt tagcgatgaa cgttacaaaa cacaaatcgt ttccattgat catgcgttgg
     1201 ataaactcga tcagatagga ggatattatt atcagtggaa ggaagggcag gaccagagcc
     1261 ggcaggcagg gctgattgca caggaagtgg agaaggtgct gcccgaaatt gtgcaaacgg
     1321 acgaagcggg ttacaagagt gttgactatg gcaaaatgaa tgcattgctg atccaggcca
     1381 ttaaagaaca acaaaaggaa atagaagaac tgaaagcaat cctcaaatcg aagaaaagga
     1441 aatgaattca atgccctgcc agcacaaaat ttgacaagaa aacttcagaa ctcaggattc
     1501 ttatgatctg aaggcaatac atcatcgcat tcccatccaa taacccaatc tcaccttctg
     1561 gtaaacgcgg ccattgagtc aaacatgcct gagatagttt cggcaaacaa atcacaaaca
     1621 ccatgaaagc actcctgacc gtctttatca taatggcatg tatgggcccg gtattgtcgc
     1681 agagcgttgg agtcggcaca caaacgccaa acaccagtgc catgctcgat atttcgagca
     1741 ataccaaagg gctcctcatt ccccgcatga cggagaacga aaaggcccag atttccagcc
     1801 cggccactgg cttgcttata tggcaaaccg acggcacacc tggcttttac tacaatgccg
     1861 gcaccccaca gggccccaaa tggttcatgc tgagtgtagc ggatgcgagc aactggtcaa
     1921 ttaatggcaa tgacgatatc aatcctgcgg ttcatttttt gggaaccacc aaggcccagc
     1981 ctctgcggtt cagggtaaac aatatttggg caggctcgat agattctgca acaggtacat
     2041 tcattggctt caggaccggt cagaatgacc tgcagggaaa tgtggcattt ggcaaaaagg
     2101 cattagctgc caacgtaaac ggggttggac tcactgccat cgggaatgca gccttacaga
     2161 acaaccaggg tggctcgaat aatacagctg taggagacgc agcactcaaa ggcaatacta
     2221 ccggcgtttg gaataccgcg ttgggtgcac aatccatgat gaataacgca accggaagcg
     2281 aaaatgtagc ggtaggaaga tacaccatgg tagacaatag cggcaataac aatgtaagtg
     2341 tgggagtcta ttccatgatc aagaatagcg gaaatgataa tgtggccatt ggctattatt
     2401 cccagttcct gaatgaaact ggtgcacaaa atgtggctgt tggctccaat accctcagga
     2461 gtaattccac aggatcaagt aatgtggcca ttgggtttag cgcactgcat accaatgata
     2521 ccggaaacag aaatgtggaa attggatttt ttgctttgag agagaacaaa gaaaatgaca
     2581 atactgccgt agggtattat gctttgagga ataactcgag cggtatccaa aatactgcga
     2641 tgggcaacca ggccttgttt tcaaataccc aaggttcata caatactgct gtaggctacc
     2701 agacgctcaa caaaagccag gcacattgga atacggccat ggggagcgga gccatgcgaa
     2761 tgaactggtc cggtgatgat aacagcgcat ttggactggg cgctttgcag gaaaatacta
     2821 gcggcggcag taatacagcc ttaggtgttt acgccctcag agagaacact accggcaata
     2881 acaatgtagc cataggtcgt agtgctggaa catttaacat ctccgggaat tataatacgt
     2941 ttgttggtgc cagcagtaat gcaagtggca ccaggactaa cgttacaacc attgggtata
     3001 ctgcattggc ggaatgttct aattgcgtca tttt
//
LOCUS       DATIQF010000891         1788 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_242302,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000891 DATIQF010000000
VERSION     DATIQF010000891.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1788
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242302"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..807)
                     /locus_tag="VLL95_15335"
     CDS             complement(<1..807)
                     /locus_tag="VLL95_15335"
                     /inference="COORDINATES: protein motif:HMM:NF015226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urea transporter"
                     /protein_id="HSR40282.1"
                     /translation="MSKPSNSFYDPYLKGIGQIMLQESSLTGLLFLIGILINSPLMAV
                     GTLLGAVVGTLTAKLLKFDEGNINSGLYGFNAALVGIALLVFFDATIVVLISIVALSA
                     LSAVLMNICLKNKIPIFTFPFIVLVWISLYVFHTVAPIEPPSEADLAGLIEETATFNL
                     ANFGFGFGEVIFQGSFVSGLVFFIAVYLSSPNAALWGLAGAFAGGLFAGLLVDQFDAV
                     QQGWFTFNSVLCAITFSGLKRRNGIFVLIAVFFSVVIENFMMAKGLTFLTF"
     gene            1023..>1788
                     /locus_tag="VLL95_15340"
     CDS             1023..>1788
                     /locus_tag="VLL95_15340"
                     /inference="COORDINATES: protein motif:HMM:NF013741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM domain-containing protein"
                     /protein_id="HSR40283.1"
                     /translation="MYLLGLCIVLLFLGFFAGIEIAFISANKLSIELRKKQGKQSGII
                     LSRFFEDPSRFIGVCIIGFNLFLVAYGIMVGALLKPFWEITGINQFDSSGTLQLLAEV
                     IAASVIVLFTEFFFKAIFRAKNDTLLGVSAPILSLFYQVLAPVGRFFVTISNWMLQYL
                     FNVPVADPKRPFSRIDLEHYFQQTKESEEDNTELNQELFENALSLSGVKIRSCLVPRK
                     EIVGIDKRTSISEAVAKMVDTKLSKLIVYDGNIDNIV"
BASE COUNT          519 a          414 c          424 g          431 t
ORIGIN      
        1 aaaagtgagg aaggtgagcc cttttgccat catgaagttt tcaataacta cggagaagaa
       61 aacagcaatg agcacaaaaa tgccgttcct gcgtttcagg ccagaaaagg taatggcaca
      121 aagcactgag ttgaaagtga accaaccttg ctgcacagca tcaaactgat cgaccaggag
      181 gccggcaaaa aggccgccgg caaaagcacc tgccaggccc cacaaagccg cattggggct
      241 gctgaggtaa actgctatga aaaacacaag acccgacaca aaactgccct ggaatatcac
      301 ctcaccaaat ccgaagccga aattggccag gttgaaggtg gcggtttctt caataagacc
      361 tgccaggtca gcttctgacg ggggctcgat gggtgcaacc gtatgaaaaa cgtacaatga
      421 aatccagacc aaaacaataa aggggaaagt aaaaatggga atcttgtttt tgaggcaaat
      481 attcataagc actgcactca gggccgacaa ggccacaatg ctgatcaaca ctactatagt
      541 agcatcaaaa aacaccaata aggcaatgcc taccaaagcc gcattgaaac catagagtcc
      601 gctgttgata ttgccttcgt caaatttcag caacttggcg gtgagggtgc ctacaacagc
      661 tcccaataaa gtaccaacgg ccatcaaagg cgaattaatc agaatgccga tcaaaaatag
      721 caggccggta agcgaacttt cctgcaacat aatttgacca atgcctttga ggtacgggtc
      781 gtagaaggag ttggatggtt tggacatatg aatggttttt ctaaaaatag tgaaaataca
      841 attgaaatgg agtggttaga ccttagggca ttattgatgc cattgatgca ttgaccatgg
      901 caagtgcccg gatggtcatg ccccctgctt gctgtagcca ccactgtccc ctaagcattt
      961 gacctgaaaa atggacggtg tttgcctatt tttgaagtac tcaccattcc caacagcggt
     1021 ttatgtacct attaggcttg tgtattgtat tgttgttcct tggctttttt gccgggattg
     1081 aaatagcatt tatcagtgcc aacaagctga gcatcgaatt gagaaaaaag cagggcaaac
     1141 aaagtggtat catcctcagc cggttttttg aggaccccag ccggttcatt ggcgtttgca
     1201 tcatcggctt caacctgttc ctggtagcct atggcatcat ggtgggagct ttgctgaagc
     1261 ctttctggga aataaccggt atcaatcaat tcgacagttc gggcaccctg caactgctgg
     1321 ccgaagtgat agcggcttct gtaatcgtgt tattcacgga gttttttttc aaagccattt
     1381 tcagggctaa aaacgatact ctcctgggag tctctgctcc tattctcagt ttgttttacc
     1441 aggtacttgc accggtgggt cgttttttcg tcaccatttc caactggatg ctgcagtacc
     1501 tcttcaatgt gccagtggct gaccccaaac gtcctttcag ccgcatcgac ctcgagcatt
     1561 attttcagca aacaaaagaa tcggaggaag acaataccga actcaaccag gaactttttg
     1621 aaaatgcgct gagcctttcc ggggtgaaaa tcaggagctg cctggtgcca cgcaaggaga
     1681 ttgttggcat cgacaaacgc acctccataa gcgaggcggt ggccaaaatg gtagatacca
     1741 aactcagcaa gctgattgtg tacgatggca atatcgacaa cattgtgg
//
LOCUS       DATIQF010000892        15606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_89954, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000892 DATIQF010000000
VERSION     DATIQF010000892.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 15606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15606
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89954"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..703
                     /locus_tag="VLL95_15345"
     CDS             <1..703
                     /locus_tag="VLL95_15345"
                     /inference="COORDINATES: protein motif:HMM:NF014592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S-adenosylmethionine:tRNA
                     ribosyltransferase-isomerase"
                     /protein_id="HSR40284.1"
                     /translation="PYLQRAADSTDATRYQTIYAQNDGSVAAPTAGLHFTQPVFEALQ
                     QNKVDLAFTTLHVGAGTFKPVKAVTMAGHEMHAEFMEIDTALLRRLLQYPIVIPVGTT
                     SMRTLESIYWMGVKACHNPEIALTDLELTQWEVYDVLADKAVGRKEALQALLDWMERR
                     SKGQLIVKTSIIIAPGYTFRICNGLITNFHQPKSTLLLLVAALIGPDWKAVYAYALEN
                     DFRFLSYGDSSLLLP"
     gene            complement(714..968)
                     /locus_tag="VLL95_15350"
     CDS             complement(714..968)
                     /locus_tag="VLL95_15350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40285.1"
                     /translation="MELLSGIVHPILVETSLPVSIPEASYKASYTYQIISSLGHILRK
                     GSFQGCFIYISTRMLPKGEQFLLRINSDSGTVVESKFKTI"
     gene            complement(1188..2537)
                     /locus_tag="VLL95_15355"
     CDS             complement(1188..2537)
                     /locus_tag="VLL95_15355"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSR40286.1"
                     /translation="MSLKKLLPLIIVLITVSLIGIIYMQYNRIQNLLLVKEEQLNEKV
                     SMAIDMVGKDLSENSAATRGSVNLRQRRKSSLGLGNQLVPVELMQPALISERYTQFEI
                     KEKLDQAFREKKIPIQHYEFAITNNLNLMSFEMRSPGFVNAMDDSTNNVTWHYPLQPP
                     PGTWAEDLAPYELLTIVVPDFRKLVVKQSYSEFIGAIVFTLFVMTAFFITVRTMLNQK
                     KLSEIKSDFINNMTHEFKTPLATISLAVDALNNEKVLKDDTKLNYFRGIIKEENRRMN
                     KHVETILQAAALEKQDLTLNKKKCSGHEIVEHSLNNYKLVLQEKNGKITLNKNARYDS
                     IFVDEQHFTNLMNNLVDNAIKYSKDAPEITITTHSTNKFFCIRIDDKGIGMSRESVKK
                     IFEKFYRAHTGNIHNVKGFGLGMSYVKSIIDAHKGRIKVDSVLGKGSTFVVEVPLAS"
     gene            2684..3235
                     /locus_tag="VLL95_15360"
     CDS             2684..3235
                     /locus_tag="VLL95_15360"
                     /inference="COORDINATES: protein motif:HMM:NF014659.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HSR40287.1"
                     /translation="MIEPGPGVILISDPFLKDPNFMRTAVFLCEHNEEGSFGFVLNRP
                     FEQRLDEFVPDLEGFVIPVYYGGPVQPDTLHFLHNIPALQPDAQKIFDDVYWGGDFRE
                     VIRLIKSRELDLDNIRFFLGYSGWSEGQLGDELEEKSWLTVKGTHKLVFGTETGEVWK
                     EAVLQLEEQYHPIVHYPIDPQLN"
     gene            complement(3302..3979)
                     /locus_tag="VLL95_15365"
     CDS             complement(3302..3979)
                     /locus_tag="VLL95_15365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40288.1"
                     /translation="MKPNLKVALLAVSLFAGLFAMAQPKKGDAYMSIFYSAAVPTGNF
                     KSSFVDRTSWRGSAIDLMWYVSDELALGASLAFQDFYQKTPRDLYQLSDGSDMSAVRS
                     RSLQTIPLMMKANYFPVKMKTASGTVLAGNRVEPGLQVLPYFSLGAGVNMVPYQQLYG
                     IFTSADDFRAGFAAMAGAGLKVPFGRFMQNGFVLEANYNLMPFNHFVMTNVNHFNFRL
                     GFQFEMQ"
     gene            complement(3992..4603)
                     /locus_tag="VLL95_15370"
     CDS             complement(3992..4603)
                     /locus_tag="VLL95_15370"
                     /inference="COORDINATES: protein motif:HMM:NF024978.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4136 domain-containing protein"
                     /protein_id="HSR40289.1"
                     /translation="MKKTLMAMVAISCLLAVSCRKDPSNQLSDEESRIYITEQTPGTN
                     FGSFTTFAVRDSVLNIDGDKTYYQLNNVDRAFIEAVRNNMRARGYTEVTRDQSPTIGL
                     QVVRITRTTTGTIIWGGGGWWGGGGWWGPGWGWGAPVWGTTFEIREGMLAVDMYDLKK
                     GVTENKIYLMWSGLIRGRGIFDVNTAQSQVDQLFTQSPYIKRG"
     gene            complement(4763..5020)
                     /locus_tag="VLL95_15375"
     CDS             complement(4763..5020)
                     /locus_tag="VLL95_15375"
                     /inference="COORDINATES: protein motif:HMM:TIGR01216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HSR40290.1"
                     /translation="MNLEILTPDKKLFSDEVYGVQLPGVSGLFEILEKHAPLVSALSK
                     GTIKVLVDKSGSNVTSFQITGGFVEIINNKATVLVESGTPA"
     gene            complement(5105..6610)
                     /gene="atpD"
                     /locus_tag="VLL95_15380"
     CDS             complement(5105..6610)
                     /gene="atpD"
                     /locus_tag="VLL95_15380"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HSR40291.1"
                     /translation="MANVGKIKQIIGAVIDVHFDGDSKLPEIYNALEVKRETGEVLVL
                     EAQQHLGEDSVRCVAMDSTEGMVRGMKVVDTGKAIAMPTGEAINGRLFNVTGDPIDGL
                     PPVDKTNGRPIHAKPPAFENLSTATEVLFTGIKVIDLIEPYAKGGKIGLFGGAGVGKT
                     VLIQELINNIAKGYGGLSVFAGVGERTREGNDLLREMIEAGIMKYGDNFKHSMEEGGW
                     DLEKVDMDGLKESKATFVFGQMNEPPGARARVALSGLTIAEYFRDGDGQGKGKDILFF
                     VDNIFRFTQAGSEVSALLGRMPSAVGYQPTLANEMGLMQERITSTKNGSITSVQAVYV
                     PADDLTDPAPATTFAHLDATTVLSRKIADLGIYPAVDPLDSTSRILTPAIVGEAHYNC
                     AQRVKMILQRYKELQDIIAILGIDELSDEDKMTVARARKVQRFLSQPFHVAEQFTGLK
                     GVFVSIEDTIRAFNAIMDGEVDEYPEAAFNLVGSLEDAIEKGKKLLAQAQG"
     gene            6983..7315
                     /locus_tag="VLL95_15385"
     CDS             6983..7315
                     /locus_tag="VLL95_15385"
                     /inference="COORDINATES: protein motif:HMM:NF012305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HSR40292.1"
                     /translation="MNLYIGNLSWGTSEADLQQLFEAYGEVSSCKIIKDKVTNRSKGF
                     GFVEMPNDEEANAAISALNGKDIGGRAISVNEARPREERPAGGGFRGGNRGGNFGGGG
                     YGGGRNRY"
     gene            7584..8591
                     /locus_tag="VLL95_15390"
     CDS             7584..8591
                     /locus_tag="VLL95_15390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40293.1"
                     /translation="MRITRYLLLSLVGLLFALWLLLQTPGFQNWLVQTASHRLSRSLG
                     TKVQVKRAYLGFLNRLNIEGVLVQDQQRDTMISIGRLQVNTTDWLLFKDTVVIKYLAL
                     KDVRVRLYRNDTTWNYAFLDKLFGGKTDTTNAPAQGSDTAGGAPPLALRLEILQVDNL
                     RFIQADRWRGKSMLAGVGHLYLKARQFDVNKQQFHIQTLELQQPEFRELRRKGNWSPA
                     DSIAYYRKIDSLDKLRTFPESWNPGGMKLVVDQVKLDGGIVEIYNRLDRPFVRGEFDE
                     KDIIIQPINGSFRNLVLDHDTLTSDVAISARERSGLNIKKLQSRFRMHPQLMEFSRLD
                     L"
     gene            8592..12341
                     /locus_tag="VLL95_15395"
     CDS             8592..12341
                     /locus_tag="VLL95_15395"
                     /inference="COORDINATES: protein motif:HMM:NF016260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HSR40294.1"
                     /translation="MNESRLGPYYAMRYRTFDDMEYFVDSVRISARLENSTVSMKDIA
                     FFAPELKSIKQVATLSGSAEGTVSNFTVRNVDLRTGNSRLTGTYSMKGLIDIDKTVID
                     FNTPGSRLALPDVAVWAPQLLQLKNTPVSKLGIVTYTGNFKGTVYDFAARGNLQTDVG
                     YLGADLKMRLSGKNQGFEGTVTNAHIDGGRLLDVPALGMVKFDGKVRSNGFSASNPLW
                     VEGSVRSLEYKGYAYSNLQMEGRFQNAALEADLSVADPHLGANISTVLNFKEKKQRYN
                     ARGAVAHADLLALGLAKDTVKVSGLFDVDFIGTTSDEFIGYARVYEAEVYDKSELLSI
                     DSLLISASIDETGRKFISVNTNEAAVNLEGKFQLAELPNSFKAFLHSYYPSIIPAPQG
                     TVLDQDLVFYVDTREIESFLHFIDPKLKGLNNTQINGSLNTADRTLLVNVTSPYFSYD
                     GLRMSNIDIKANGNIDKLKVESQIDDVSLNDSLGFPAVKFYVNTNADTTSLQLTTSSK
                     GQVGDAAINAQVFSNPDGFEMQFDESSIIINNKKWTISSTSNIELHKKYLIAKGVDLS
                     QGEQRIRIHSAPSDEGDWNDLYVDISEFIIGDVLPYVLKEPRLEGLLGGKVVIEDPMG
                     KPFVRADLEARKFYFNNDSVGLVKLSGEYNAVNNRIQARINSENPEYDFGSIVRIDLN
                     DSVHNQIDADIVLRKEKLSMLQNYLGVVFSSMDGFASGNLKVVGPFARPSILGRTTLH
                     NATFTIDYTKCTYTVDSSTIVFGDNFINFGTMKLKDVAGRSGTLNGIMYHRFFDSLSF
                     NIKMQTDGMQVLNTGARDNDLFYGKAVAKASFELSGPLNNMQMKVTGETTDSSHIIIA
                     NKTSKESGEADYIVFKQYGTEQVREVDTSQTNIHMELDLTANPLCRIDVVMDEMSGDK
                     LSATGTGNIKIRTGTSDATVMRGRYQIESGSYNYSFQTIIKKPFELEGGDKSYIEWNG
                     DPYDAVLNVSAKYTAQNVSLRDLVGNEQNQTVLDQSAQNYKGDVYVKTKVTGRLSAPK
                     LTFDIEFPAGSPMLNNVSAQAMLSQIRSDNSEMLRQVTYLIVFRSFAPYKEGTSSRNP
                     GADLAVNTLSDILSRQMEKILTDVVQNITGDKSLNVDFSTEFYNSSSVTSGNVNASTG
                     YDRVSFNFMLNKSYFNNRVVVNLGSNFDLDVRNTALTGFQFLPDVSVEFILTQNRRLR
                     AIVFKKDYLDFVGRRNRAGVSLSYRKDFDKLISSQRDEGLIFIRK"
     gene            complement(12411..13001)
                     /locus_tag="VLL95_15400"
     CDS             complement(12411..13001)
                     /locus_tag="VLL95_15400"
                     /inference="COORDINATES: protein motif:HMM:NF015871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HSR40295.1"
                     /translation="MKNISTIMSGAALAGVAVLFFLHFSQPAKPDLPKTSTKADSHTH
                     GQIAYFDMDSVEQHYDFIKQVREELKKQENNISNELNTMRKGYMGRIQQLQAKAPGMS
                     QQEGEAAQAEINQMQINLQQQEAKLTKDLQDKQFKMMQEINEKIASYLKEYNNGRNFS
                     YIISRSPGDFIYLTDTAFNITNDLIKGLNELHKKPK"
     gene            13118..13591
                     /locus_tag="VLL95_15405"
     CDS             13118..13591
                     /locus_tag="VLL95_15405"
                     /inference="COORDINATES: protein motif:HMM:NF014629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HSR40296.1"
                     /translation="MKLLFWSVGGRHEPNYAPAIDEFCKRIGHYFPCEWKLVSSPKNA
                     ASLSHAELKDAESRLLLQALDPVDYVVLLDERGKMLSSPDLAAVLQERAVNGARKIHF
                     VIGGAFGVNDEVRKRADLVWQLSKLVFPHQLVRLILAEQVYRACTINRGEKYHHA"
     gene            complement(13594..13947)
                     /locus_tag="VLL95_15410"
     CDS             complement(13594..13947)
                     /locus_tag="VLL95_15410"
                     /inference="COORDINATES: protein motif:HMM:NF014119.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HSR40297.1"
                     /translation="MGSHQLTGIQGEDLATAFLQGKGFAIIARNWRYKKSEIDIIASH
                     ANTLHFVEVKTKRSDFLGNPESKVDRKKVAQMKIAAEAYLFQHPEWQFIQFDIVAITL
                     PLQGAPEIVLIEDIS"
     gene            14051..14611
                     /locus_tag="VLL95_15415"
     CDS             14051..14611
                     /locus_tag="VLL95_15415"
                     /inference="COORDINATES: protein motif:HMM:NF042461.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6580 family putative transport protein"
                     /protein_id="HSR40298.1"
                     /translation="MNRNVALIFAIMIGVSAAYRVVPYTLRPEWLGAPQLAMAVFAGA
                     VIKDRKWAFALPLFSMLLSDLTMQGLHQFNNSYYPGFYKGQFLNYVLILATTVIGFFI
                     NGRKPLQILAGALAAPISYFLLSNFAVWIGGGGLGRPQTVQGLMMVYADGLPFLKTSL
                     MGTAVFSVVFFGLHRLLLGQRSVAVA"
     gene            14820..>15606
                     /locus_tag="VLL95_15420"
     CDS             14820..>15606
                     /locus_tag="VLL95_15420"
                     /inference="COORDINATES: protein motif:HMM:TIGR00231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HSR40299.1"
                     /translation="MADLKFRRNFGIAAHIDAGKTTTTERILRYTGMIHRIGEVHEGA
                     ATTDWMEQEKERGITITSAAVSCKWNFPTDKGKATANTKEYSFNIIDTPGHVDFTVEV
                     ERSMRVLDGLIALFSAVDGVEPQSETVWRQANRYGVPRIGFVNKMDRSGADFLNVVKQ
                     VREMLGSKAVPLQLPIGAEDNFQGVVDLIKMKGIIWHMETEGMTFDEIDIPADMVEEA
                     QMWRAQLVEAVAEYDDQLMEKFFDNPDSISEDEIHEAIRKATID"
BASE COUNT         3834 a         3647 c         4058 g         4067 t
ORIGIN      
        1 gccctatttg caaagggcag ctgacagcac cgatgccacc cgctaccaaa ccatctatgc
       61 acaaaacgat ggcagcgtgg cagcccccac ggcgggcctg catttcaccc agccggtgtt
      121 tgaggcgttg caacaaaata aggtagacct tgccttcacc accctgcatg tgggcgccgg
      181 tacttttaag ccggtgaagg ccgttaccat ggccggccat gaaatgcatg ccgagttcat
      241 ggaaatagat acggcattac tgcgccggct gcttcaatac ccaatcgtga taccagtggg
      301 caccaccagc atgcgcaccc tcgaaagcat ttactggatg ggagtaaagg cctgccacaa
      361 cccggaaata gcgctgacgg acctggagtt aacacaatgg gaagtgtacg atgtactggc
      421 ggataaagca gtcgggagaa aggaggcgtt gcaggctttg ctggattgga tggagcgccg
      481 gagcaagggg cagctcattg taaaaacgag catcatcatt gcgccgggtt atacgtttcg
      541 aatttgtaat ggattgatca ccaattttca tcagcccaaa agcactttgc tgttgttggt
      601 ggcggcattg atagggcccg attggaaagc agtgtatgct tacgcccttg aaaatgattt
      661 tcgcttcctg agttatggcg acagcagttt gctgctgccc tgatgcggct tcttcaaatg
      721 gttttgaatt tgctttcgac cacagtgcca ctgtcgctgt tgatgcgcaa caagaactgt
      781 tcgcctttgg gcagcatgcg ggtggagatg taaatgaaac atccctggaa agaacccttg
      841 cgcaggatgt gtcccagcga actgatgatc tggtacgtgt aggaggcttt gtagctggct
      901 tccggaatgc tcaccggcaa gctggtttca accagtattg gatgcacaat ccccgataac
      961 aattccatga tggcagtttt ttttgatgaa gcatggaggg cggggttttg cagtgtagca
     1021 agtgcaggca agtagtgagt agcgtgggaa agtaagtaga gcctaaatta gaaggcattt
     1081 ttggaaaaga ctcaaatcag cggcaactat tttccggaaa atcgaaaaat atgcccattt
     1141 tttgatatat gtcaaattga aaagggcgtg tggacaggtt ttcgggctca ggaagccagt
     1201 ggtacctcta ccacaaaggt gctgcccttg cccagcacac tatctacttt gatgcggcct
     1261 ttgtgagcat cgatgattga tttcacataa ctcatgccca ggccaaatcc tttcacattg
     1321 tggatgttgc cggtatgggc ccggtaaaat ttctcgaaga tcttcttcac actttcgcgg
     1381 ctcatgccaa tgcccttgtc atcgatgcgg atgcagaaga atttgttggt gctgtgggtg
     1441 gtgatggtga tctcaggggc atccttggaa tatttgatgg cattgtccac caggttgttc
     1501 atcaggttag tgaagtgttg ctcatctaca aaaatcgaat cgtagcgggc attcttgttc
     1561 agcgtgatct taccgttttt ctcttgcagc accagcttgt agttgttgag ggagtgctcc
     1621 acaatttcgt gcccgctgca tttctttttg ttcagcgtga ggtcttgttt ctcgagggcc
     1681 gcagcctgca gtatggtttc cacatgtttg ttcatgcggc ggttttcttc tttgatgatg
     1741 ccccggaagt agttgagctt ggtatcatcc ttcaatacct tttcattgtt caaagcatcc
     1801 acagccagcg atatggtggc cagcggggtt ttgaactcat gtgtcatgtt gttgatgaaa
     1861 tcggatttga tttcgctcag ctttttctgg ttgagcatgg tgcgcaccgt aatgaagaag
     1921 gctgtcatta caaacagggt gaacacgatg gcgccaatga attcggagta cgattgcttt
     1981 actaccagtt tcctgaaatc gggcaccacg atggtcagca gttcataggg tgccaggtct
     2041 tcggcccagg tgccgggcgg gggttgcagc gggtaatgcc aggttacatt attggtactg
     2101 tcatccattg catttacaaa acccgggctg cgcatttcaa aactcatcag gttgaggttg
     2161 ttggtaatgg caaattcata atgctggatg gggatctttt tttcccggaa tgcctggtcg
     2221 agtttttcct tgatctcaaa ctgggtgtac cgttctgaaa tgagggccgg ctgcatcagt
     2281 tccacgggta cgagctggtt gcccaacccc agggatgatt tgcgtctttg cctgaggttg
     2341 acactgcccc gggtggcggc actgttttcg ctcaggtcct ttcccaccat gtcgatggcc
     2401 atggatactt tttcattcaa ctgctcttcc tttaccaata gcaggttttg gatgcggttg
     2461 tactgcatgt aaatgatacc gatcagtgaa actgtaatca ggacaataat cagcggaagg
     2521 agttttttaa gcgacatagc ggagcaggat gcgtgcaaaa ctaagggaga cgggcaggca
     2581 atgattttac gactgactat tttaaccagt gttttccata tgctgctttg cgaattgccc
     2641 tgattttttg gggattttca attttgcttc ctactttaaa tgtatgattg aaccaggtcc
     2701 aggcgtcatt ttgatctccg atccgttttt gaaagacccc aacttcatgc gtacggcggt
     2761 gttcctgtgc gagcacaacg aagaagggag ctttggtttt gtactcaacc gcccatttga
     2821 gcagcggctc gatgagtttg tgcccgattt ggagggtttt gtgatcccgg tatattacgg
     2881 ggggcctgtg cagcccgata cccttcattt tttgcacaac attccagcct tacaacctga
     2941 tgcgcaaaag attttcgacg atgtgtactg gggcggcgat ttcagggagg taatcaggtt
     3001 gatcaagagc cgggaattag acctcgataa tatacgcttc tttttgggct acagtgggtg
     3061 gagcgagggt caattgggtg atgaactgga agaaaaaagc tggcttacgg taaaaggtac
     3121 ccataagctg gtgtttggca ccgaaaccgg tgaagtatgg aaggaggcgg tattgcagtt
     3181 ggaagagcag tatcacccca ttgtgcatta cccgatcgat ccgcaattga attgaacacc
     3241 gttttgctcc tacaaaaaaa gcaggccata acagcctgct tttttaatga gatgattgcc
     3301 cttattgcat ttcaaactgg aagcccagcc tgaaattgaa atggttcacg ttggtcatta
     3361 caaaatgatt gaatggcatg aggttgtaat tggcctcgag cacaaagcca ttttgcatga
     3421 atcttccgaa aggaactttg aggcctgcgc cggccatggc agcaaagccc gccctgaaat
     3481 cgtcggcact ggtaaaaatg ccatacaact gctggtaggg taccatattt accccagcac
     3541 ccaggctgaa atagggaagt acctgcaaac ccggttcaac acggttgcct gccaaaacag
     3601 tgccggaggc ggttttcatt tttaccggga agtaattggc cttcatcatc agggggatgg
     3661 tctgcaaaga acggcttctt accgccgaca tatctgatcc atcggacaat tggtaaaggt
     3721 cccggggtgt tttctggtaa aagtcctgga aggccaggct ggcacccagg gccagttcat
     3781 cgctgacata ccacatcaaa tcgatggcag aacctctcca cgaggtacgg tcgacaaagc
     3841 tgcttttgaa attgccggtg ggaacggctg cgctgtaaaa aatactcatg taggcgtcgc
     3901 cttttttagg ctgtgccatg gcaaacagcc cggcgaaaag tgaaactgcg agcagggcta
     3961 ctttcaagtt aggtttcatg gtggttatgt tttagcccct tttgatataa ggcgattgag
     4021 taaatagttg atcaacctgg ctttgggctg tattcacatc gaaaatgccc ctgcccctga
     4081 taaggccgct ccacatgagg taaattttgt tttcggtaac tccttttttc aggtcataca
     4141 tatccactgc cagcatgcct tctcttattt cgaaggtggt gccccaaaca ggagcgcccc
     4201 agccccagcc cgggccccac cagccgccgc cgccccacca gccgccgccg ccccagataa
     4261 tggtgcctgt ggtggtgcgg gtgatgcgta ctacctgcag cccaatggtt ggagattgat
     4321 cacgtgtcac ttcggtgtat ccacgggccc gcatgttgtt gcgaacagct tcaatgaatg
     4381 ccctgtcaac attgttcaat tggtaatagg tcttgtcgcc atcaatgttt aaaacagaat
     4441 cgcgaacggc aaaagtggta aaagaaccaa aattggttcc cggagtctgc tcggtgatat
     4501 agatgcgact ctcttcgtct gaaagctggt tgctgggatc tttccggcaa cttactgcca
     4561 gcaggcagga aattgccacc atggccatca aggttttttt catagtcatt ggggtttaaa
     4621 taaatccggc taaaaataga gtaaaaataa cgacaaccta ttgctgctta gtgctgcatt
     4681 tgcaaaaaag ccaaaagaat tcctcatgga ttggcaggaa ttcttttggc ttttgtaaaa
     4741 agaaaaaaaa ttgaaggtat cgtcaggctg gcgtgccgct ttctaccagt accgtggctt
     4801 tgttgttgat gatctcaaca aatccgccgg tgatctgaaa ggaagtgaca tttgatccgc
     4861 ttttgtcaac cagcactttg atggtccctt tggaaagggc acttaccagt ggagcgtgtt
     4921 tttcgaggat ctcgaacagg ccgcttactc ccggcagctg tacgccgtaa acctcgtcgc
     4981 tgaacagctt tttgtcgggt gtcagtattt ctaagttcat tttctgcggg attgagaatt
     5041 tgaattaaag cttgctgtgt ggtgatgttc ccgtttttat ggaagcatcc tgcacatggg
     5101 ctcattatcc ttgcgcctgc gccaacagct tcttgccttt ttcgatggcg tcttccagtg
     5161 agcccaccag gttgaaagct gcttcaggat attcatctac ctcaccgtcc atgatggcat
     5221 taaaggcgcg gatggtgtct tcaatgctca cgaatacgcc tttcaaacca gtaaactgct
     5281 cggccacgtg gaaaggctgg ctgaggaagc gctgcacctt acgggcacgg gcaaccgtca
     5341 ttttgtcttc gtcgctcaat tcgtcgatac cgaggatggc aatgatgtcc tgcagttcct
     5401 tgtaacgctg cagaatcatt ttcacacgct gggcgcagtt gtagtgcgct tcgcccacga
     5461 tggccggtgt aaggatacgg ctggttgaat ccagcggatc caccgcagga tagataccga
     5521 ggtcagcaat cttacggctc aatacagtag tggcatcgag gtgggcgaag gtggtagccg
     5581 gagcggggtc ggtcaagtca tccgcaggta cgtaaacggc ctgcactgaa gtgatagaac
     5641 catttttggt agaggtaatg cgttcctgca tcaggcccat ttcgttggcc agggtaggct
     5701 ggtaacctac ggctgaaggc atacgaccca agagggcaga tacctcagaa ccggcctgtg
     5761 tgaaacggaa gatattgtct acgaagaaca ggatgtcttt tcctttgccc tggccgtcgc
     5821 catcgcggaa gtattcggca atggtcaaac cagaaagggc tacacgggca cgggctccgg
     5881 ggggttcgtt catctggccg aatacgaatg ttgccttgga ttctttcagg ccatccatat
     5941 ccactttttc caggtcccag ccaccttctt ccatgctgtg tttgaagttg tcgccgtatt
     6001 tcatgatacc ggcttcgatc atttcacgca gcaggtcatt gccctcacgg gtacgttcgc
     6061 ctacgccggc aaacaccgac agaccaccat aacctttggc gatgttgttg atcagttcct
     6121 ggatcaatac ggttttacct acaccggcac caccaaacag accgatctta ccacccttgg
     6181 cataaggttc gatcaggtcg atcaccttaa taccggtgaa aagcacttcg gtggcggtgc
     6241 tcaggttttc gaatgctggc ggcttggcgt gaatggggcg gccgttggtc ttatctacag
     6301 gaggcaaacc atcgatgggg tcaccggtta cgttgaacag gcggccgttg atggcttcgc
     6361 cggttggcat ggcaatggcc ttgccggtgt ccactacctt catgccgcgt accatgcctt
     6421 cggtgctgtc catggccaca caacgaacac tgtcttcacc caggtgctgc tgtgcttcca
     6481 gcaccagcac ttctccggtt tcacgcttta cttccagggc attataaatt tcgggaagct
     6541 tagagtcgcc gtcgaaatgc acgtcaatta cggcaccaat gatctgtttg atcttaccaa
     6601 cgttggccat agtagattat gttttacaaa aagatgttgc tggttgcagg agggtgatct
     6661 taccattttc cgtggtgagg cgatcacacc ctgttcaaaa ttggctgcaa aagtaaggga
     6721 ggggccgcta ataacagccg ctaacaatta caattttggt aaaagagttt caggacagag
     6781 acccggagac caaccgggac cttcttccgg gggtggggaa ggcggttttc aggccgatcc
     6841 attgttgttt ttctattatg gatggttata aatattgatt attatttgga gaacacgcaa
     6901 gaatgatgca acctttgttg gtattttttc acttgcctga ttatcttttt acagtaatcg
     6961 ggtgttcttt gaaatccatt ttatgaactt gtacattggc aacctgagct ggggaacatc
     7021 tgaagctgat ctccagcagc tctttgaagc ttacggtgaa gtttcgtcct gcaaaatcat
     7081 caaggacaaa gtaactaatc gtagcaaagg cttcggtttc gtggaaatgc ctaacgatga
     7141 agaagcgaat gctgctatca gcgccctcaa cggcaaagat atcggtggtc gtgccatcag
     7201 cgttaacgaa gcacgtcctc gcgaagagcg tcctgcaggc ggtggtttcc gtggcggcaa
     7261 ccggggtggt aacttcggtg gcggtggcta cggtggcggt cgcaacaggt attgatccct
     7321 tgcatcattc cggtcccctg atatcgttcc cgctatttgg ttttccgaaa atgacactgc
     7381 atttcaaccc cggcactgcc ggggtttttt ttgcctattg ccgccgtggt tgcagtagcg
     7441 tcaacctgtt ttgttaagaa ttcatccgga tggatccaaa atattgattt gctggccact
     7501 atgaatcaaa ggtggcgttc ccatgctatt tttacacacc ttataagtat taacaacccg
     7561 gctcatccca tttgaaaaag gcattgcgca taaccagata tctattgctc tcgctggtgg
     7621 gcctgctttt tgcgttgtgg ttgctgctgc aaacccccgg ctttcagaac tggctggtgc
     7681 agaccgcctc ccaccgcctc agccgcagcc tgggtacgaa ggtgcaggtg aaaagggctt
     7741 acctcggatt tctcaaccgg ttgaatattg aaggagtatt ggtgcaagac cagcaacgtg
     7801 ataccatgat ctcgatcggc aggttgcagg tgaataccac cgactggctg cttttcaagg
     7861 atacggtggt gataaaatac ctggcactga aggatgtgag agtgcgcctg taccgcaatg
     7921 acactacctg gaattatgcc tttctcgaca aactttttgg aggcaagacc gataccacca
     7981 atgccccagc acaaggcagc gatacggcgg gcggtgcccc tccgttggcc cttcgcctcg
     8041 aaatccttca ggtcgacaac cttcgattca tccaggccga ccggtggcgc ggcaaaagca
     8101 tgctggccgg tgttggtcat ctttatttga aggcaaggca gtttgatgtc aacaagcagc
     8161 aatttcacat ccagaccctg gaactccagc agcctgaatt ccgggaactg cggagaaagg
     8221 gcaattggtc gccggctgat tccattgcct attaccgcaa gattgattcg ctcgacaaac
     8281 tgcgcacttt tccagagtcg tggaatcccg gcggcatgaa actggtggta gaccaggtga
     8341 aactggacgg gggcatcgta gaaatttaca accgtcttga ccggcctttt gtgcggggtg
     8401 agttcgatga aaaagacatc attattcagc ccatcaatgg cagcttcagg aacctggtgt
     8461 tggaccatga caccctgacc agtgacgtag ccatttccgc aagggaaagg agtggattga
     8521 acataaagaa attgcagagc cgatttcgga tgcacccgca attgatggag ttcagccgct
     8581 tggatctgta gttgaacgaa agtcgcctgg ggccctacta cgccatgcgt tatcgcactt
     8641 tcgacgacat ggaatacttt gtagacagcg tcaggatttc agcacgtttg gaaaacagta
     8701 cggtgagcat gaaggacatc gccttttttg cgccggagct gaagtccata aagcaagtgg
     8761 ctacactgag tggatcagcg gaaggaaccg tcagcaattt cactgtgcgg aacgtagacc
     8821 tgcgcaccgg caattcaaga cttaccggca catattccat gaaaggcctc atcgatattg
     8881 acaagaccgt tatcgatttc aatacacccg gctcccggtt ggccttgccc gatgttgcgg
     8941 tgtgggcgcc tcagttgctg cagcttaaga atacaccggt aagcaaattg gggatcgtga
     9001 cctataccgg taatttcaaa gggacagtgt atgactttgc tgcccgtggc aatctgcaaa
     9061 cggatgtagg gtatttgggt gccgacctga aaatgaggct gagtggaaag aatcaggggt
     9121 ttgagggaac ggtaaccaat gcccatattg atggcggcag gttattggat gtgcccgccc
     9181 tgggaatggt aaaatttgac ggcaaagtgc gcagcaatgg attcagcgct tccaacccat
     9241 tgtgggtgga aggttccgtg cgttcgctgg agtacaaagg gtatgcgtat tccaacctgc
     9301 agatggaagg acgtttccag aacgcggcat tggaagcaga cctctccgtt gcagatcctc
     9361 acttgggcgc caacatcagt acggtgctga actttaaaga aaagaaacaa cgctacaatg
     9421 cccggggggc ggtggcccat gccgacctgc tggctctggg cctggccaaa gacaccgtaa
     9481 aggtttctgg attgttcgat gttgatttta ttggcaccac ctctgatgag tttattggtt
     9541 atgcacgagt gtatgaggcc gaagtgtacg acaaaagcga actgctgagt atcgattcat
     9601 tactcatcag tgcctccatt gatgaaacag gccgtaagtt cattagtgta aatacaaacg
     9661 aagccgcagt gaaccttgaa ggtaaatttc aattggctga attgcccaat agtttcaagg
     9721 cattccttca cagttattat ccgtccatca ttcctgctcc acagggtacc gtgcttgacc
     9781 aggaccttgt tttttatgtg gatacaaggg agattgaatc ctttcttcat ttcatcgatc
     9841 ccaaattgaa aggactgaac aatacgcaaa tcaatggaag cctcaatacg gcagacagaa
     9901 cactgctggt gaatgtgacg tctccgtatt tttcttacga tggtttgcga atgagcaata
     9961 ttgacatcaa ggccaatggc aatattgaca aactgaaagt ggaaagccag attgatgatg
    10021 tgagcctgaa cgacagcctt ggttttccgg ctgttaagtt ttacgtaaac accaacgcgg
    10081 ataccacttc cttgcaactc actaccagtt caaaagggca ggtgggcgat gcagccatta
    10141 atgcacaggt tttttccaat cccgacgggt ttgagatgca gtttgatgaa tcttccatca
    10201 tcatcaataa taaaaaatgg accatcagca gtaccagcaa cattgaattg cacaagaaat
    10261 acctgatcgc caaaggggtt gatctttcgc agggtgagca gcgcatccgc atccattctg
    10321 ctccttccga tgaaggcgat tggaatgatc tgtacgtaga tatttccgaa ttcattattg
    10381 gcgatgtact gccttatgta ctgaaagagc caaggctgga aggattactg ggtggcaaag
    10441 tggtcatcga ggatccaatg ggaaagccct tcgtacgagc tgacctggaa gcgaggaagt
    10501 tctatttcaa caacgattca gtgggcctgg taaaactcag cggcgaatat aatgcggtga
    10561 acaaccgtat acaggccagg ataaattcag aaaatcccga gtatgacttt ggcagtatag
    10621 tgcgtattga tttgaacgat tccgttcata accagattga tgctgacata gtgttgcgca
    10681 aggaaaagct gagcatgctg cagaactacc tgggagtggt tttttcttct atggatggtt
    10741 ttgccagcgg caacctgaaa gtggtagggc cctttgcccg cccttccatc cttggccgta
    10801 ccacgctcca caatgccact ttcaccattg attataccaa gtgtacctac acggtcgatt
    10861 catcgacaat cgtgttcgga gacaatttca tcaatttcgg cacgatgaaa ctcaaagatg
    10921 tggccggccg atccggaacg ctcaacggaa ttatgtacca ccggtttttc gacagccttt
    10981 ctttcaacat caaaatgcag actgatggaa tgcaggtatt gaataccggt gccagggaca
    11041 acgacttgtt ttacggcaag gccgtggcca aagccagttt tgaattgtca ggtccgctca
    11101 acaacatgca gatgaaggtg accggggaaa caacggattc atcgcacatc atcatagcca
    11161 acaaaacgag caaggaaagt ggcgaagccg attacattgt attcaagcaa tatggaaccg
    11221 agcaggtgcg tgaggtggat accagtcaga ccaatatcca catggaattg gacctcactg
    11281 ctaatccgct ctgcaggatc gatgtggtca tggatgaaat gtcgggcgac aaactgagtg
    11341 ccactggaac aggaaacatc aaaatcagga caggaaccag tgacgcgacg gtgatgcgcg
    11401 gccgctacca gattgagagc ggcagctaca actatagttt ccagactatc atcaaaaaac
    11461 catttgagct ggaaggtggc gacaagagct atatcgaatg gaatggcgac ccctatgatg
    11521 cggtgctgaa cgtgagtgcc aagtataccg cccaaaacgt aagcctgcgc gacctggtcg
    11581 gcaatgagca aaaccaaact gtgctcgacc agtcagctca gaactacaag ggggatgtgt
    11641 acgtgaaaac gaaagtgacc ggcaggctga gtgcgccgaa actgacgttt gatatcgagt
    11701 ttcctgcagg tagccccatg ctgaacaacg tgagtgccca ggccatgctg agccaaataa
    11761 gaagtgacaa tagcgagatg cttcgccagg ttacgtacct cattgtattc cgatcctttg
    11821 ctccgtataa agaaggcact tccagccgca accccggcgc cgacctggct gtgaatacac
    11881 tgagcgacat tcttagccgg cagatggaga aaattctgac cgatgtggtt cagaacatta
    11941 ccggtgacaa aagcctgaat gtggatttca gcacagagtt ctacaactca tcatcagtta
    12001 cctccggcaa tgtgaatgcc agtacggggt acgacagggt gagtttcaat ttcatgctga
    12061 acaaatcata tttcaacaac cgggtagtgg tgaacctggg aagcaatttt gatttggatg
    12121 ttcggaacac tgccctcacc ggcttccagt ttttgcccga tgtaagcgtg gaattcatcc
    12181 tcacacaaaa ccggcgtctc cgggccatcg tgttcaaaaa agactacctt gattttgtgg
    12241 gaagaagaaa cagggcgggg gtgagtctca gttatcgcaa ggatttcgat aaactcattt
    12301 catcccaaag agatgaagga ttgatcttca ttcgcaaata gcggaatgga accaaaaaag
    12361 aagcgatgca tctggtgcat cgcttctttt tatttgatcg ggtggaacga ttatttgggt
    12421 ttcttatgca attcattcag gcctttgatc aggtcgttgg taatattaaa ggcggtgtca
    12481 gtcaggtaaa tgaaatcgcc gggcgaccgt gaaatgatgt acgagaaatt cctgccgttg
    12541 ttgtattctt tcaggtagga agcaattttt tcgttgatct cctgcatcat cttgaattgc
    12601 ttgtcctgca agtccttggt gagtttggct tcctgctgtt gcaggttgat ttgcatctgg
    12661 ttgatttctg cctgggcagc ttccccttcc tgttggctca tgccaggggc tttggcctgc
    12721 agttgctgaa tgcggcccat gtatcccttg cgcatcgtgt tcagctcatt cgaaatgttg
    12781 ttttcctgct tcttcagttc ttcccgaacc tgtttgatga agtcgtaatg ctgctccacc
    12841 gaatccatgt cgaaataagc aatttggcca tgggtatggc tgtctgcctt ggttgaagtt
    12901 ttgggcaaat cgggtttggc aggctgggag aaatggagga aaaaaagaac tgccacgccg
    12961 gcgagggcag ctccgctcat aatagtgctg atgtttttca taaagcgatt tgtcagatca
    13021 aacagatgcg aaagtagcag attggaattc acgaaagctg ttaaattgaa tggggcgaaa
    13081 ggagaagatt tttcacccaa tccgggtaaa ttgcctcatg aaattgttgt tttggtcggt
    13141 ggggggcagg cacgagccca actatgctcc tgctattgat gagttttgca aaaggatcgg
    13201 tcactatttt ccctgcgaat ggaaacttgt gtcaagccct aaaaatgctg cgtctttgtc
    13261 gcatgccgaa ctgaaggatg cggaaagcag gttactgttg caggccttgg atccggtgga
    13321 ctatgtggtg ttgctggatg aaagaggcaa aatgctttca tcgccggacc tggctgctgt
    13381 gttgcaggag agggcggtca acggggcaag gaaaatccat tttgtaatcg gcggcgcctt
    13441 tggagtgaat gacgaggtaa ggaagagggc agacctggtg tggcaattat caaagctggt
    13501 atttccccac cagttggtac gcctcatact ggccgaacag gtgtacaggg catgcaccat
    13561 caaccggggc gaaaagtacc atcatgcctg agttcagcta atgtcctcaa taagcacaat
    13621 ttctggtgct ccctgtagcg gtagggtgat ggctacaata tcgaactgga taaattgcca
    13681 ctcgggatgc tggaacaggt aggcttccgc tgctattttc atttgagcca cttttttccg
    13741 gtccactttg gattcgggat tgcccaaaaa atcacttcgt ttcgttttta cctccacaaa
    13801 atgcagggta ttggcatggc tggcaataat gtcgatttcg cttttcttgt atcgccagtt
    13861 cctggcaatt atagcaaagc ctttgccctg cagaaaagct gtggcaaggt cttcgccttg
    13921 aattccggta agctggtggc tacccatggt tgaaattttc cacaatcagc aaatggggtg
    13981 gaagggttgt tttgattttg ccttccattt tggcctattt ttgcctcctt caatcaggaa
    14041 aataagacaa atgaacagaa acgttgcttt gatttttgcc atcatgatcg gcgtgagtgc
    14101 tgcttaccgt gtggttccct acaccctgcg ccccgagtgg ttgggtgctc ctcaactggc
    14161 catggcagta tttgccggcg ccgtgattaa ggaccgtaag tgggcatttg cactgccact
    14221 cttctctatg ttgctgagtg accttaccat gcaggggctt catcaattca acaatagcta
    14281 ctatcccggt ttttacaaag gccagttcct gaattatgtt ttgatcctgg ctaccactgt
    14341 aattggattc tttattaatg gccgtaagcc actgcagatc ctggcaggtg ccttggctgc
    14401 tcccatttct tatttcctgc tgtcaaactt cgcagtgtgg ataggtggcg gaggcctggg
    14461 aagaccccaa accgtgcaag ggttgatgat ggtgtacgcc gacgggcttc ccttcttgaa
    14521 aaccagcctg atgggcactg ccgtattcag cgttgtattc ttcggattgc atcggttgct
    14581 cctgggccag cgcagtgtag cggtagcctg atccgtaccg aattcgttaa gcacattacc
    14641 ataagagaaa taggctgctc cggcagccta tttcagttta catggcccag ccttctccca
    14701 ttgttacaga cacattcaca atttctttat tcacctgaac atatattcag cacagaacct
    14761 gtacttttgc gcctcgaaat ttttcagggt aatcccgcac attaaataaa acgaccacta
    14821 tggccgatct caaattcaga cgcaattttg gtattgccgc ccacatcgac gccggtaaaa
    14881 ccaccacaac tgagcgtatt ctgcgctaca caggtatgat ccaccgaatt ggtgaagtac
    14941 acgaaggtgc cgctaccacc gactggatgg agcaggaaaa agaacgtggt atcaccatta
    15001 cctcagcagc ggttagctgt aagtggaatt tccctaccga taagggtaag gctactgcaa
    15061 atactaagga gtattccttc aatatcattg atactccggg tcacgtggat tttaccgtag
    15121 aagttgagcg ttccatgcgt gtactcgatg gtctgatcgc cctgttttct gctgtagatg
    15181 gtgtggaacc ccagtctgaa accgtttggc gccaggccaa ccgctacggt gtaccccgta
    15241 ttggttttgt aaacaaaatg gaccgttcag gtgccgactt cctcaatgtg gtgaagcagg
    15301 tacgtgaaat gctgggttca aaggcggtgc ctttgcagct gcctattggc gctgaagaca
    15361 atttccaggg tgtggttgac ctgatcaaaa tgaaagggat catctggcac atggaaaccg
    15421 aaggcatgac tttcgatgaa attgatattc ctgctgatat ggtggaagaa gcgcaaatgt
    15481 ggcgtgccca gttggtggaa gccgtagctg aatacgacga ccagcttatg gagaaattct
    15541 tcgacaatcc ggacagcatc agcgaagacg agattcatga agccatccgc aaggccacaa
    15601 tcgacc
//
LOCUS       DATIQF010000893         1784 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_166195,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000893 DATIQF010000000
VERSION     DATIQF010000893.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166195"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..622
                     /gene="bshB1"
                     /locus_tag="VLL95_15425"
     CDS             <1..622
                     /gene="bshB1"
                     /locus_tag="VLL95_15425"
                     /inference="COORDINATES: protein motif:HMM:TIGR04001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019213 - deacetylase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bacillithiol biosynthesis deacetylase BshB1"
                     /protein_id="HSR40300.1"
                     /translation="DLTMGELGTRVTPFTRVQEAEDALQVMGLDARENLSLPDGFFQN
                     TKEYQLEVIRAIRKYRPHVVLTNAPADRHPDHGKAAQLVKDSAWLSGLRKIITHNEGE
                     EQEAWRPAYVFHFIQDRYLEPDFVYDISPVMERKIEAIRAFKTQFDTSPDQEPQTYIS
                     TPGFLQSIIDRARSLGKTIGVEYAEGFVSEKMLGISTFDSFIQNVT"
     gene            712..1782
                     /locus_tag="VLL95_15430"
     CDS             712..1782
                     /locus_tag="VLL95_15430"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016717 - oxidoreductase activity, acting
                     on paired donors, with oxidation of a pair of donors
                     resulting in the reduction of molecular oxygen to two
                     molecules of water [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA desaturase"
                     /protein_id="HSR40301.1"
                     /translation="MATPKFPHVTPSFHSVLKQRVNQYFQENNISPTGGWRLFTKGLL
                     LFSLLLTTYVVLLIVQPATLWAMLLCALMGLLIATIGFNIMHDGSHGSFSKYAFINKL
                     AALTLNMLGGSAFMWNQKHNVIHHAYTNVHDVDDDLDAGFLMRMSKHQPKLGIHRLQH
                     VYFWVLYALLYLFWIFYSDFKKYFTGKIGSVPLKKMSLKDHVSFWLGKALFAMVFMII
                     PIATFGFVNWMIGFLVMTTVSGLVLSIVFQLAHTVEHTSFPVADEVTGKLEDEWAVHQ
                     LKTTANFATRNRVVSWLVGGLNFQVEHHLFPRISHIHYPEINKIVKKACAEFNVPYIE
                     YKTMGKAIISHVSYLRMLGTAA"
BASE COUNT          450 a          433 c          428 g          473 t
ORIGIN      
        1 agacctcacc atgggtgaat tgggtacccg agtcacgccc ttcaccaggg tgcaggaagc
       61 agaagatgct ttgcaggtga tggggctcga tgccagggaa aacctgtcgt tgcccgatgg
      121 tttttttcaa aacaccaagg agtatcaatt ggaagtgata cgggccatcc ggaagtaccg
      181 gccgcatgtg gtgctgacca atgctccagc cgacaggcac cccgaccacg ggaaagcggc
      241 gcaactggta aaagacagcg cctggctgag tggtttgcgg aaaatcatta cacacaatga
      301 aggcgaagag caggaggcct ggcgtcctgc ctatgtgttc catttcatcc aggaccggta
      361 cctggaaccg gactttgtgt acgacatttc ccccgtgatg gagcgaaaaa tagaggctat
      421 cagggctttt aaaacgcaat ttgacacgtc cccggaccaa gagccccaga catacatcag
      481 cacccccggt ttcctgcaat caatcattga tcgggcacgt tccctgggca aaaccattgg
      541 ggttgaatat gccgaaggat ttgtttctga gaaaatgttg gggatatcaa cctttgacag
      601 ttttatccaa aatgtaacgt aaccggtaat ttagactacc taccttcgcc agcaatttgt
      661 cgggggtagt acaaaacctg cattcggcat ctctaaaatc agcttttatt aatggctact
      721 cccaagttcc cccatgttac cccctcattc catagtgtat tgaagcaaag ggtaaaccag
      781 tatttccagg aaaacaatat ttctcccaca ggcggttggc gtcttttcac caaaggactt
      841 ttgttgttca gtttgctgct cactacatac gtagtgctgc tcattgtaca gcctgcaact
      901 ctttgggcca tgcttctgtg tgcattgatg ggcctgctca ttgcaaccat cggtttcaac
      961 atcatgcatg atggcagcca cggaagtttc agcaagtacg ctttcatcaa caagctggct
     1021 gcccttacgc tgaacatgtt gggtggcagc gctttcatgt ggaatcagaa gcataacgtg
     1081 atacaccatg cctataccaa tgtacatgat gtggacgatg atctggatgc cgggttcttg
     1141 atgcgcatga gcaagcatca acccaagttg ggtattcacc gcttgcagca cgtgtatttc
     1201 tgggtgctct atgctttgct ttatctgttc tggatcttct actccgattt caagaaatat
     1261 ttcactggaa aaattggatc ggttcccctg aaaaaaatgt cattgaagga tcatgtttcc
     1321 ttctggttgg gaaaagccct ttttgcaatg gtgttcatga tcatccccat cgccactttt
     1381 ggcttcgtta attggatgat cggctttttg gtgatgacta ccgtaagcgg cctggtgctg
     1441 agcatcgtat tccagttggc ccataccgtt gaacatactt cctttcctgt ggccgatgaa
     1501 gtaacaggca agttggagga cgaatgggct gttcaccaac tgaaaacaac tgccaacttt
     1561 gccacccgca accgtgtggt aagttggttg gtaggtggtc tcaacttcca ggttgagcac
     1621 catttgttcc ccaggatttc gcacatccat tatcctgaaa tcaacaagat cgtaaagaag
     1681 gcatgtgctg aattcaatgt tccctatatc gaatacaaaa ccatggggaa ggcaattatc
     1741 agccacgtat cttacctgag aatgttgggt actgcagcct aacg
//
LOCUS       DATIQF010000894         1573 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_44356, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000894 DATIQF010000000
VERSION     DATIQF010000894.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44356"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..508)
                     /locus_tag="VLL95_15435"
     CDS             complement(<1..508)
                     /locus_tag="VLL95_15435"
                     /inference="COORDINATES: protein motif:HMM:NF013104.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40302.1"
                     /translation="MAKKTIKQIAPFLILAIIAVAALFIPSLPTFDDGGKIYSGADIT
                     WILVATALVFLMTPGLAFFYGGMVHRKNVISTMIKSVVAAGIVSILWIVVSYSLSFGD
                     SIGGFIGNPSTHLFFKDVMSGEPLSLAPTIPKPLFAFFQLMFAIITPGLVVGAVAERI
                     RFTAYILFI"
     gene            complement(680..>1573)
                     /locus_tag="VLL95_15440"
     CDS             complement(680..>1573)
                     /locus_tag="VLL95_15440"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSR40303.1"
                     /translation="GVVFRCNTNVGTDVSTGDLLREFQAIVLAGGSTIPRDLPAKGRE
                     AKGVYYAMQFLKQQNKRVANPEAKLLQERGFAGSQWTEEISAAGKHVVVIGGGDTGSD
                     CVGTSNRQGAASVTQFELLPQPPVSRTAAMPWPTYPMLLKTTSSHDEGCDRKWAVATK
                     EFVADEKGVLKSLRIVDLEWELAPDGRPVKFSEIAGSEREIPCDLALLAMGFVHPQQE
                     GVISDLELELDERGNVKASEQHFQTALSKVFACGDMRRGQSLVVWAISEGRECARKVD
                     EFLMGSSLLETKENSILFNFI"
BASE COUNT          383 a          414 c          402 g          374 t
ORIGIN      
        1 caatgaagag aatgtaagcg gtgaaacgta tgcgttcagc tactgcgcct accaccaacc
       61 cgggggtgat gatggcaaac atgagctgga aaaatgcgaa gagaggtttg ggaatggtgg
      121 gggccagcga caagggctca cccgacatta catctttaaa aaacaaatgg gtggatggat
      181 tgccaatgaa gccgccaatg ctgtcgccga aagaaaggct gtaactcacc acaatccaga
      241 gaatgctgac gatacccgca gccaccacgc ttttgatcat ggtgctgatc acattcttgc
      301 ggtgtaccat gccgccatag aaaaaggcca ggccgggggt catcaggaat accagcgccg
      361 tagccaccag gatccaggtg atatcggcac cggagtaaat tttgccgcca tcatcaaacg
      421 tgggcaatga aggaatgaat aaggcagcca ctgcaataat cgccaggatg agaaaagggg
      481 cgatctgttt gattgttttc ttagccatgc ttagttctgg tttttaggtg aattctacat
      541 atgattatct aaactattta attatccatt agaaagtgta ttagtaacct gtagtgttga
      601 taaaaaagat tatatatttt atattataat gtatttgggt aaaaagaaga gctcgacgag
      661 ctcttctttc gaatttccat taaataaaat tgaaaaggat gctgttctcc ttggtttcga
      721 ggagtgagct tcccatcagg aattcgtcca cttttcgggc acattcccgg ccttcactga
      781 tggcccaaac caccaggctc tgcccccggc gcatgtcgcc acaggcaaaa accttggata
      841 atgcggtttg aaaatgctgc tcagacgcct tgacattgcc cctctcatcc agttccagtt
      901 ccaggtcgga aatcactcct tcctgctggg gatgcacaaa gcccatggcc agcagcgcca
      961 ggtcgcaggg tatctccctt tcggaaccgg ctatttctga aaacttcacc ggccggccat
     1021 cgggcgccag ttcccattcc aggtctacta tgcgaaggga tttgagtaca cccttttcgt
     1081 cggctacgaa ttccttggtg gccaccgccc attttctgtc gcacccttca tcatgactgc
     1141 tggtagtttt cagcagcatg gggtaggtag gccagggcat ggcggcggtt cgggaaacag
     1201 gcggctgggg cagcaattca aactgagtga cactggccgc cccctgccgg ttgctggtac
     1261 ccacgcagtc gctgccggtg tcgccaccgc caatcaccac cacatgctta ccggcggcag
     1321 aaatttcttc ggtccactgg ctgccggcaa atcctctttc ctgcagcagc ttggcttcag
     1381 gattggccac ccgcttgttt tgttgcttca ggaattgcat ggcataatac acccctttgg
     1441 cttcgcggcc cttggcaggc aagtcgcggg gaatggtgga gccgcccgcc agcacaatgg
     1501 cctggaactc ccgcagcagg tcacccgtgc ttacatcggt acccacattg gtattacagc
     1561 ggaatactac gcc
//
LOCUS       DATIQF010000895         4526 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_196659,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000895 DATIQF010000000
VERSION     DATIQF010000895.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4526
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196659"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3020
                     /locus_tag="VLL95_15445"
     CDS             <1..3020
                     /locus_tag="VLL95_15445"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR02504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HSR40304.1"
                     /translation="ELVYSILNQMAVPNSPQWFNTGLYSAYGIAGKPQGHYFVDPVDG
                     QLKKSTSAYERPQPHACFILSVSDDLVNDGGIMDLWIREARIFKYGSGVGTNFSQIRG
                     EGEKLSGGGISSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDLDHPEIVDFVDWKV
                     EEEKKVGALVAAGYSNDYEGEAYRTVSGQNSNNSVRIPNDFFKVLDEDGDWELKARTD
                     GRTMKKVKAKELWQKICYAAWRCADPGTQYDTTINEWHTCPEGGRINASNPCSEYMFL
                     DNTACNLASANLRKFFNEETGVFDVTGFEYMCRLWTVVLEISVLMAQFPSQEVAQLSY
                     DYRTLGLGFANLGSMLMVSGIPYDSPEAQAIGGAISAIMTGVAYKTSAEMAEVLGAFP
                     RYKENAKHMLRVMRNHRAAAYDATDAYEGLSIKPMGINSKYCPDYMLKAACKAWDEAV
                     MLGEKHGYRNAQTTVIAPTGTIGLVMDCDTTGVEPDFALVKFKKLSGGGYFKIINQSV
                     PTALRKLGYNEKEIESIVNYAKGAASLHGAPHINPQSLSEKGLIGEEIQKLEAGMASA
                     FHIKFAFNVYSLGEACMERLGFKPEEYNDFSWNMLEALGFSDEQIEAANEYVCGTMTI
                     EGAPYLKEEHYAVFDCANKCGEIGQRYIHAHGHIKMMGACQPFLSGAISKTINLPHEA
                     SVEEIADCYRMSWELGLKANALYRDGSKLSQPLSNKSDEKKKDKTAAAETTAAAEETV
                     SNIVDLGQLTVEELLEEVQKRMQASQDTKLKRQLAKIVERRTLPAKRRGFTQKAKING
                     QAIFLRTGEYSDGTLGEIFIDLAKEGSTLRSLMNSFAIAISVGLQYGVPLEEFVEKFV
                     FTKFEPAGMVDHPNIKTTTSIVDFVFRALAYEYLGRTDLVHVLDKPEIGNLGDEDDEV
                     ELLQDQPVVEKKTPELSSVRITPQSNAGTKPSKVQAEKPVTAPVDQTLAQINKQMQQN
                     QCDAPACNVCGAIMMRSGACYKCNNCGNQGGCS"
     gene            3193..>4526
                     /locus_tag="VLL95_15450"
     CDS             3193..>4526
                     /locus_tag="VLL95_15450"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HSR40305.1"
                     /translation="MKQLKRILFGLASILLLQFSSGAQVIYNFRYQLPQVDTTNYDAF
                     VVIAGAGGGFARVKYWSAEQNKSVIIEAQLQDTFATDGDGITDESRKGYVTLQPKSLN
                     GQASNIPQVVYWFKANENDQMEPWGVALKNGAPGDAPRFYDHVRMIEQADLKKAFVLQ
                     YFNRRDSVYQRMFEGVARGPGLSTSNMTMHMIIVANVDDDSIGASAAKDKDEMMKMLN
                     SLAGSMKVKTNAIVIAGDNYSKKSLLNALSGLQPQKQDMVIFYYSGHGFRRQKTTSAN
                     LPMNGIYPHLDLRANKQQDYLKESIGIDSVYSILLRKGARFNLVLGDCCNSVVEATNT
                     VAKPPGVPRGPELEKSMRNVQAMFLDPAPVAIIATAANVQELASSNNNFGGFFSYFFR
                     STLNFYLSPLRVDPPTWESLLREAQTETVKKARRTYCSRPFVPANICKQTPI"
BASE COUNT         1267 a         1093 c         1183 g          983 t
ORIGIN      
        1 aggagttagt gtacagcatt cttaaccaga tggcggtacc caacagcccg cagtggttca
       61 ataccggcct gtacagcgct tacggcattg ccggcaaacc ccagggccac tactttgttg
      121 atcctgtgga tggccaattg aaaaaatcaa cttcggccta cgaaaggcct caacctcatg
      181 cctgcttcat tctgagtgtt agcgacgatc tggtgaatga cggcggcata atggacttgt
      241 ggattcgcga agcccgcatt ttcaaatatg gttctggtgt gggtaccaac ttcagccaga
      301 tccgtggcga aggtgaaaaa ctgagcggcg gtggcatcag cagtggcctg atgagcttcc
      361 tgaaaatagg cgaccgtgca gccggcgcta tcaagagtgg tggtaccacc cgccgtgcgg
      421 caaaaatggt atgccttgac ctggaccacc ctgagatcgt agattttgtg gattggaaag
      481 tggaggaaga gaagaaagtt ggtgccttgg tagctgctgg ctacagcaac gactacgaag
      541 gggaagcgta ccgcactgtt agtggtcaga acagcaacaa ctctgttcgc atccccaacg
      601 actttttcaa agtgctggat gaggacggcg actgggaact gaaggcccgt accgatggcc
      661 gcaccatgaa aaaggtaaaa gccaaagaac tgtggcagaa aatatgctac gcagcatggc
      721 gctgtgccga cccaggtacg caatatgata ccaccatcaa cgagtggcat acctgccccg
      781 aaggtggacg catcaacgcc agcaacccct gttccgaata catgttcctc gacaacactg
      841 cttgcaacct ggccagtgcc aacctgcgca agttcttcaa tgaggaaaca ggcgtatttg
      901 atgtaacagg ttttgaatac atgtgccgcc tgtggacagt ggtgctcgag atcagcgtat
      961 tgatggcaca gttccccagc caggaagttg cccagctgag ctacgactac cgtacccttg
     1021 gccttggctt tgccaacctg ggcagcatgc tcatggtaag cggtattcca tacgacagcc
     1081 ccgaagcgca agccattggc ggtgccatca gcgctatcat gactggcgtg gcctacaaaa
     1141 cttcagccga aatggccgaa gtactcggag ccttccctcg ttacaaggaa aatgcaaagc
     1201 acatgttgcg tgtaatgcgc aaccaccgtg cagccgctta tgatgctacc gatgcttacg
     1261 aaggtttgag catcaagccc atgggcatca acagcaaata ttgccccgat tatatgctga
     1321 aagccgcttg caaagcatgg gatgaagcgg taatgctggg tgagaagcat ggctatcgca
     1381 atgcgcagac cacagtgatt gcgccaaccg gaactattgg cctggtgatg gactgcgaca
     1441 ctaccggtgt agaacccgac tttgccctcg tgaagttcaa gaaactgagc ggtggtggtt
     1501 atttcaagat catcaaccaa agcgtaccca ccgcactgcg caagttggga tacaacgaaa
     1561 aggaaattga aagcattgta aactatgcca aaggtgccgc cagcctgcac ggagcacccc
     1621 acatcaatcc ccagagcctg agcgaaaaag gattgatcgg cgaagagatc cagaagttgg
     1681 aagccggcat ggcatcagca ttccatatca aatttgcttt caacgtgtac tcgctgggtg
     1741 aagcctgcat ggagcgcctt ggcttcaagc cggaagaata caacgatttc agctggaaca
     1801 tgctggaggc gttgggcttt agcgatgaac aaattgaagc agccaatgag tatgtatgcg
     1861 gcaccatgac cattgaaggg gcgccttacc tgaaagaaga acactacgcc gtgtttgact
     1921 gcgccaacaa gtgtggcgaa ataggtcagc gttatatcca tgcgcatggc cacatcaaga
     1981 tgatgggtgc ttgccagccc ttcctgagtg gcgccatcag caaaaccatc aacctgcctc
     2041 atgaagcgtc tgtagaagag attgccgact gctatcgcat gagttgggaa ctgggtttga
     2101 aagccaacgc cctctaccgt gatggcagca aactgagcca gccgctgagc aacaagagcg
     2161 acgaaaagaa aaaggacaag acagcagccg ctgaaaccac tgctgcagct gaagaaaccg
     2221 tgagcaatat tgttgacctc ggtcagctca ctgtagaaga attgctggaa gaagtgcaga
     2281 agcgcatgca ggccagccag gacaccaagt tgaagcgtca actggccaag atcgttgagc
     2341 gtcgcaccct gcccgccaag cgtcgtggct ttacgcaaaa ggccaagatc aatggccagg
     2401 ccatcttcct gcgcaccggc gaatacagcg atggtacact gggtgaaatc ttcatcgacc
     2461 tggccaagga aggcagcacc ctgcgcagcc tcatgaacag ctttgccatt gctatttctg
     2521 tgggattgca gtacggcgtg ccattggaag aattcgtaga gaagttcgtg ttcaccaaat
     2581 ttgagccagc gggcatggtt gatcacccga acatcaagac caccacttct attgtcgact
     2641 tcgtgttccg ggcgctggcc tatgaatacc tgggtcgtac cgacctggtg catgtgctcg
     2701 acaagcctga aataggcaac ctgggcgatg aagatgatga ggtagaattg ctgcaggatc
     2761 agcctgtggt tgaaaaaaaa acacctgaac tgagcagtgt tcgtatcaca cctcagagca
     2821 atgctggtac caagccttcc aaagtacagg ctgaaaagcc ggtgacagct cccgtggatc
     2881 aaacactggc gcagatcaac aagcaaatgc agcagaatca atgtgatgcc cccgcttgta
     2941 acgtatgcgg tgccatcatg atgcgcagcg gcgcctgcta caagtgcaac aactgtggca
     3001 accagggagg ctgcagctaa gcctgattaa aggatggaat tcatagacca ccagcatttg
     3061 ctggtggttt ttttatgccc tacccggcat ccaaaaatat gataccactg aagtgaggca
     3121 ggcaccgata tccaaaatga ttcagaagta catgggttta aatactaaat tgtaaactca
     3181 agcagtaaga atatgaaaca actaaaacga attttatttg ggctggcttc tattcttttg
     3241 cttcaattca gcagcggtgc tcaagtcatt tacaatttca ggtatcaatt gccccaagtt
     3301 gataccacga attatgatgc attcgtggtg atagcagggg ctggtggagg ttttgccaga
     3361 gtgaaatatt ggtcggcaga gcaaaacaag tctgtcatta ttgaagccca attacaggac
     3421 acttttgcca ccgatggcga tggaataaca gatgaaagca ggaaaggata cgttaccctg
     3481 caacccaaat ccctcaatgg acaggcctcc aatatcccac aggtagtgta ttggtttaag
     3541 gccaatgaaa atgaccaaat ggaaccatgg ggagtggcgc tgaaaaatgg tgctcccggg
     3601 gacgctccca ggttttacga ccatgttcgc atgattgagc aagccgattt gaaaaaggct
     3661 ttcgtgttac agtatttcaa taggagagat tctgtgtacc agcgcatgtt tgaaggggta
     3721 gcgaggggac cgggattgag taccagcaac atgacaatgc acatgatcat tgttgccaat
     3781 gtagatgatg attcaattgg agcctcggcc gccaaggaca aagatgaaat gatgaaaatg
     3841 ctgaatagcc tggctggcag catgaaggtg aaaacaaatg caatagtgat agcaggtgac
     3901 aattacagca aaaaatcatt gctgaatgca ttgtcaggtc tacagccaca aaagcaagac
     3961 atggtcattt tctactattc agggcatgga ttcagaagac aaaaaacaac atcggcaaac
     4021 ctgcccatga acggcatata tccgcacctc gatttgcgtg ccaacaagca gcaggattac
     4081 ctgaaagaat cgatagggat tgatagcgtt tacagtatcc ttttgcgcaa aggagccagg
     4141 ttcaacctgg tactaggaga ttgctgtaat tcagtggtag aagcaacgaa tactgttgca
     4201 aagccaccgg gggtgccacg cgggcctgaa ttggagaaaa gcatgcgcaa cgtgcaagcc
     4261 atgtttcttg atccggctcc cgtagctatt attgcaacag ccgccaatgt gcaggaactt
     4321 gcttccagca ataacaattt tggtggattc ttttcctatt tcttccggtc aacgttgaat
     4381 ttttacctga gtccattgag ggtagatccc cccacgtggg aatcattgct cagggaagcc
     4441 cagaccgaaa ccgtaaaaaa ggccaggcga acttattgtt caaggccatt tgttccggcc
     4501 aacatttgta agcagacgcc tatttt
//
LOCUS       DATIQF010000896         3007 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_75019, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000896 DATIQF010000000
VERSION     DATIQF010000896.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75019"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            119..2632
                     /locus_tag="VLL95_15455"
     CDS             119..2632
                     /locus_tag="VLL95_15455"
                     /inference="COORDINATES: protein motif:HMM:NF024991.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSR40306.1"
                     /translation="MQHTNSQNPLLQLAHDYVMHTGESLFLTGKAGTGKTTFLRKLRE
                     ECPKQMAVLAPTGVAAINAGGVTIHSFFQLPFAPFIPVRGGTVHGEEAVGEHALISKL
                     RYSREKRELIQGLDLLVIDEVSMVRADVLDAIDTILRSIRKSDAAFGGLQMLFIGDLY
                     QLPPVVQREEWQVLGDFYEGPFFFHSHVIRRQPPVYIELQTIYRQSDERFIQLLNEVR
                     NNELSNAGLQLLNSRYQPSFEVPENESWITLATHNKIADTINEAALQQLPGQVFQFDA
                     VIEGDFSEKSYPADVNLLLKEGAQVMFLKNDVIGKKYFNGKIGKVIRLEKDKIEVQCE
                     GEAHPIEVKPESWTNIQYSLNKALQVVDEKQLGSFTQYPLRLAWAVTIHKSQGLTFDR
                     AVVDAASSFSAGQVYVALSRCRSLEGLVLRSPVPPSAVRVDKEVKAYSQSAKAAHELQ
                     AFFQIAQRNYQQQLLQQVFDATALVRASKGMCASWQQLESELGAVAIDWAQQKLSAAS
                     QLQETSEKFSSQLSRHLSTNEMMPESDPFVLQRTQNAAAWFIDQLKNLLEELKKLPIV
                     SDSQETAEEMEASLSQVVKAARRWLQLLEASKDGFNVLATIKAKSKINISDIIGIAYS
                     GTARNTTNTLLSPHPVLEERLRHWRNEVVQAENKPVYTVCTNKALSEVATFLPQTLEE
                     LIQISGFGQRKVEQFGDAVLRLVTEYCEEHHLQSHMADKMPKRQRKPKAESNVNSEKT
                     DTRLQSFTLWQQGLSVEEIATHRKLQPSTIESHLAAYVQKGEIPITALVPPALLEKCE
                     AVILELEAHSVGPVKEVMGEDLSYNQIRLVLDRMHQKIQ"
     gene            2721..>3007
                     /locus_tag="VLL95_15460"
     CDS             2721..>3007
                     /locus_tag="VLL95_15460"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: protein motif:HMM:NF015299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HSR40307.1"
                     /translation="MTNGFNPDKQHTLAGEVSVEGTGLHTGAYVNMDLKPAKPGYGFV
                     FQRIDLPNQPTIKADCDLVVDTSRGTTLEENGARVSTIEHILAALVGMGVD"
BASE COUNT          821 a          719 c          779 g          688 t
ORIGIN      
        1 agttatcaaa catggcatca cagatttaag ccagtatgcc tacgtgccgg gcaatacttc
       61 tttttacaca gaccttttca tggatgcctg attcaattca tcctataatc acaggcacat
      121 gcaacacacc aattctcaga atccactctt gcagttggca cacgattatg tgatgcatac
      181 gggcgaatct ttgtttctca cgggcaaagc aggtactggc aaaacaacct tcctgcgaaa
      241 gctgcgggag gaatgtccaa agcagatggc cgtgctggcg cctaccggtg tggccgccat
      301 caatgctggc ggggttacca tccacagttt ttttcaattg ccttttgctc ccttcattcc
      361 cgttcgcgga ggtacagtcc acggagaaga ggcagtgggc gagcatgccc tcataagcaa
      421 gttgcgttat agcagggaaa agcgggagtt gatccagggc ctcgacttgc tggtgattga
      481 tgaagtgagc atggtgcgtg ccgatgtgct ggatgccatc gacaccatac tcagaagtat
      541 acggaaaagc gatgcagctt ttggcgggct tcaaatgttg ttcattggcg atttgtacca
      601 attgcccccg gtggtacaac gcgaagaatg gcaggtgctc ggtgattttt atgaggggcc
      661 atttttcttt cacagccatg tcatcaggcg gcagccgccg gtttatatcg aattgcaaac
      721 catttaccgg caaagcgatg aacgcttcat tcaactgctg aatgaggttc gcaacaacga
      781 actctccaat gctggcctgc agttgttgaa tagtcgttat cagccctcat ttgaagtgcc
      841 tgaaaacgaa tcatggatca cgctggcaac gcacaacaaa attgctgata ccattaatga
      901 agccgcctta caacaattgc ccgggcaggt ttttcaattc gatgcggtta ttgaaggcga
      961 ctttagtgag aagagctatc cagctgatgt aaacctgctg ttgaaagaag gcgcacaggt
     1021 tatgtttttg aaaaacgatg tgataggcaa aaaatatttc aatgggaaaa ttggaaaagt
     1081 aatccgtctt gaaaaagaca agatagaagt gcagtgtgaa ggagaggcgc atcccattga
     1141 agtgaagcct gagagctgga cgaatattca gtattcgctg aacaaggcat tgcaggtggt
     1201 ggatgaaaag caattgggtt cattcaccca atatccattg cggctggcct gggcggtcac
     1261 tattcacaaa agccaggggc tcacatttga ccgggcagtg gtggatgccg cctcctcatt
     1321 ttcagctggg caggtatacg tggcactcag ccgatgccgc agtttggaag gcttggtatt
     1381 gcgcagcccg gttccgcctt ccgcggtgcg ggtggacaaa gaagtgaaag catacagcca
     1441 gtcggcgaag gcggcacatg aactgcaggc attttttcaa atagcgcagc gcaattacca
     1501 gcaacaattg ctgcagcagg tgtttgatgc cactgctttg gtgcgggcca gcaaaggcat
     1561 gtgcgcttcg tggcaacagt tggaatccga attgggtgct gtggccattg attgggcaca
     1621 gcaaaaattg tcagcagcca gccaattgca ggaaacctcc gaaaaattct cgtcgcaatt
     1681 aagccggcat ctaagcacga atgaaatgat gccggaatca gatccttttg tactgcagcg
     1741 aacccagaac gctgcagcct ggtttatcga ccaactaaaa aatctgttgg aagagctgaa
     1801 gaaattgcca atagtcagcg acagccagga aacagctgaa gaaatggaag catccctgtc
     1861 gcaagtagtg aaagcagccc ggcgctggct gcagttgctg gaagctagta aggatggatt
     1921 caacgtactg gccaccataa aagcaaaatc gaaaatcaac atatctgata tcattggtat
     1981 tgcctatagc ggcacagcac gcaatacaac caatacactg ttgagcccgc accctgtttt
     2041 ggaagaaaga ttgcgtcatt ggcgcaatga agtggtgcag gccgagaaca agcccgtcta
     2101 cactgtttgc accaacaaag ccctttcaga agtagccacc tttttgccgc aaacactgga
     2161 agaactgata cagatatccg ggtttggcca gcgcaaagtg gagcaatttg gcgatgctgt
     2221 actgcgattg gtgacggagt actgcgagga gcatcatttg caaagccaca tggctgacaa
     2281 gatgcccaaa cggcaacgaa aacccaaagc tgaaagcaat gtcaatagcg aaaaaacgga
     2341 tacccggctg cagagtttca cactttggca gcaaggtttg agtgttgagg aaatagcaac
     2401 acatcgcaaa ttgcagccct ccaccatcga atcgcatttg gctgcctatg tacaaaaggg
     2461 agaaattccc atcacagctt tggtgccccc tgctttgctt gaaaagtgcg aggcggtcat
     2521 cctcgaattg gaggcacatt cggtggggcc ggtgaaagag gtaatggggg aggacctgag
     2581 ctataaccaa atcagattgg tgcttgaccg gatgcatcaa aaaatccagt aattcgtcat
     2641 ctcccggtct gcaccaatca ccgctctgga gctaatggtt atatttgcgg cttcagtctt
     2701 caatcataag cattctaaac atgactaacg gattcaaccc cgacaagcaa cataccctgg
     2761 ctggtgaagt aagcgtggaa ggtaccggcc tgcacaccgg cgcctatgtc aatatggacc
     2821 tgaagccagc caaacccggt tatggtttcg ttttccagcg tatcgatctt cccaaccagc
     2881 ctaccatcaa ggccgattgc gacctggtgg tagatacttc ccgcggtact accctcgagg
     2941 aaaatggtgc ccgggtcagc accatagagc acatccttgc tgccttggta ggcatgggcg
     3001 tcgacaa
//
LOCUS       DATIQF010000897         9695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_90055, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000897 DATIQF010000000
VERSION     DATIQF010000897.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 9695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9695
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90055"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..595
                     /locus_tag="VLL95_15465"
     CDS             <1..595
                     /locus_tag="VLL95_15465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40308.1"
                     /translation="NRLLIRSNSDTAYADGSLFKYTFTDTVYLPSPIGQPLANLAIIL
                     PNNLNGTDTIYAAFKDVPSQSTMAILASKKSTHPAVGIEKTLGSSSFWQLTLLVFVQI
                     LFVTMVYGPIAAFLVEMFPTKIRYTSMSLPYHIGNGIFGGLVPFLATLIVEFTKTAEN
                     PAGNPLAGLWYPVGVAAVCFIIGSIYLSNKIDNYVMD"
     gene            619..894
                     /locus_tag="VLL95_15470"
     CDS             619..894
                     /locus_tag="VLL95_15470"
                     /inference="COORDINATES: protein motif:HMM:NF044889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40309.1"
                     /translation="MNQLKKLLGIIWMALAPALIVFMFWQAYEKISTAAPAVKSNTTL
                     QWFIILLVFLPICAGLFIFGLFAWTNEYAHLPESSGEIDDYDMSPID"
     gene            complement(903..1676)
                     /locus_tag="VLL95_15475"
     CDS             complement(903..1676)
                     /locus_tag="VLL95_15475"
                     /inference="COORDINATES: protein motif:HMM:NF022142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2490 domain-containing protein"
                     /protein_id="HSR40310.1"
                     /translation="MHANNSQKPCTYFCVVKKFFSIPLLFLCMLSRGQQVQESGWFAS
                     FNTIRLSAKTSLHAELQLRSTDNLAAMQTILPRIGINWMVGSNKILTAGYAYIPNRVT
                     VQGKSGLLAEHRFWQQFIINQSLSKRIGLQHRFRLEERIIPEGSVVNGELQKQGDFFN
                     ARLRYFLRSILPLKKGPGAFGKGMFAALQNEIFCNVVNLDKVNGYVFDQNRAYVAIGY
                     RISPKMDIETGYMNQYIKRSSSRENIANHILQLAFYTRL"
     gene            1700..2620
                     /gene="gldA"
                     /locus_tag="VLL95_15480"
     CDS             1700..2620
                     /gene="gldA"
                     /locus_tag="VLL95_15480"
                     /inference="COORDINATES: protein motif:HMM:TIGR03522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility-associated ABC transporter
                     ATP-binding subunit GldA"
                     /protein_id="HSR40311.1"
                     /translation="MSIKVTGLLKLYGEQRAVNNISFEASKGKITGFLGPNGAGKSTT
                     MKMVTGYLQPDGGTASVGGIDVIEQPIEARKKIGYLPESNALYTDMYIREYLDFVANI
                     YEVANYREQRESVIQKVGLVSEAHKKIGQLSKGYKQRVGLAAAIIHDPEVLILDEPTS
                     GLDPNQIVEIRQVIKELSANKTILLSTHIMQEVEAICDQVIIINKGNIVANDTLANLG
                     KNKSNPAIRVQFLEPLEKEWLARIPGVLQVEKIDTHTWEITCSHAAEGRKSVMQMALD
                     HNLTINSLQQGGSLEEVFRQLTSQEKSNIS"
     gene            2726..4015
                     /gene="eno"
                     /locus_tag="VLL95_15485"
     CDS             2726..4015
                     /gene="eno"
                     /locus_tag="VLL95_15485"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR01060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HSR40312.1"
                     /translation="MPYIANIHARQILDSRGNPTVEVDVLTDEGALGRAAVPSGASTG
                     IHEAVELRDGDKKKYLGKGVLKAVKNVNDIIANELMGWDIADQTGIDNLMIQLDGTAN
                     KAKLGANGILAVSLAVAKAAAEESGLPLYRYVGGTNAKVMPVPMMNILNGGAHADNKI
                     DFQEFMIMPIGAPSFSEGLRWGTEIFHALKNTLKKKGYSTNVGDEGGFAPNIQSNEEA
                     IETVLEAITAAGYKAGTQIKIAMDAANSELWDGKKKKYVFHKSSGKEMKSEELVKYWE
                     KWVKQYPICSIEDGMAEDDWDGWKALTQAIGSKCQLVGDDLFVTNVARLSQGIEKGIG
                     NALLVKVNQIGTLTETINAVTMAQHAGYNTIMSHRSGETEDTTIADLAVALNCGQIKT
                     GSASRTDRIAKYNQLFRIEEMLEESAYYPGKNLKFGK"
     gene            4083..4445
                     /locus_tag="VLL95_15490"
     CDS             4083..4445
                     /locus_tag="VLL95_15490"
                     /inference="COORDINATES: protein motif:HMM:NF016839.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HSR40313.1"
                     /translation="MALASPALLHLIFVPMEMLRFIRKVLLNKYVLALAAFCTWVLFF
                     DKNDFFTQRQRHTELRMLNQKITYYKEQIAAAQKELRALENDPSTLEKYAREKYYMKR
                     DNEDIYIIETPENPPGKP"
     gene            4529..4768
                     /locus_tag="VLL95_15495"
     CDS             4529..4768
                     /locus_tag="VLL95_15495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40314.1"
                     /translation="MNNFTPEQLIAFHYNELPLAEQVQIADALASNWALQQKYEVITS
                     ATSRLDRAVQKAPAQAVANVVNYAKESLALSAMEN"
     gene            4805..5500
                     /gene="nth"
                     /locus_tag="VLL95_15500"
     CDS             4805..5500
                     /gene="nth"
                     /locus_tag="VLL95_15500"
                     /inference="COORDINATES: protein motif:HMM:TIGR01083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HSR40315.1"
                     /translation="MTIKERYQAVIDYFQAHVPVAETELHYDNPFQLLIAVVLSAQCT
                     DKRVNMVTPRLFERFPDPESLAASHFDELFPYIQSISYPNNKTKHLLGLANMLLADFN
                     GQVPMTVEELVKLPGVGRKTANVITSVIDQQPNMAVDTHVFRVSRRLGLTRNASTPLA
                     AEKQLIKYIPTDLVHKAHHWLILHGRYTCLARNPKCHECGLRHTCKHYQDGQKRLVRN
                     RAMHHKKEGTGTN"
     gene            5497..6534
                     /locus_tag="VLL95_15505"
     CDS             5497..6534
                     /locus_tag="VLL95_15505"
                     /inference="COORDINATES: protein motif:HMM:NF039345.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6089 family protein"
                     /protein_id="HSR40316.1"
                     /translation="MIYFVREIAMRNTGKHILLAHALSLALVLLCHTKSVAQGRFYYA
                     NGIQEPELLFELGITGGAMNCVTDIQGNPRVYQGPFAGVTLKNTNPTVGLYGAGIWKD
                     FIGVRFEVNYGMVEGYDSLLDIATARSAIGRYDRNLNFRSKILEFAVTAEFHPLQVFR
                     SWERDAPRLSPYVFGGLSAFYFNPQAYTANGWVDLRPLRLEGQGFSEYPDRREYGKYA
                     FAYPFGIGLRYDVSPKLTLRLEANKRTTFTDYLDDVHEPNWVNPALFDKYLPPAQAAL
                     AKQLYNRSTKPNLIIPQDTRPRGHPSENDAFWTVVFKVGFNLNRSGYGGGGGMGAGGK
                     GAAKKLRCPNF"
     gene            complement(6514..6807)
                     /locus_tag="VLL95_15510"
     CDS             complement(6514..6807)
                     /locus_tag="VLL95_15510"
                     /inference="COORDINATES: protein motif:HMM:NF024988.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HSR40317.1"
                     /translation="MFNDLDPILHSQLRLAVMSLLISVKEAEFTFLKEKTNATAGNLS
                     VQLTKLKEAGYIEIKKQFKDNYPQTLCSITPKGIDAFEKYVKDLQAYLKIGAP"
     gene            complement(6800..7462)
                     /locus_tag="VLL95_15515"
     CDS             complement(6800..7462)
                     /locus_tag="VLL95_15515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40318.1"
                     /translation="MKESKPMTEQESLAMISEMIAKAKTSYHDTGAGSILWGTIISFC
                     SLVTWAQIHFQWSIPFDIWLLTLLAVVATIYWSARDSKRRKVKSYDQTAMDYTWTCFG
                     IAIFLVVHANAGTRNAFNDLKDSIEAAGLSRPSISFSDYAPAYLLVLYGIPTLVTAGI
                     KNFRPMLIGGIVCWVSAVLVVYVDSETDMLLMALSAIAAWLIPGLVLRRRCAKRKEAA
                     DV"
     gene            complement(7470..8054)
                     /locus_tag="VLL95_15520"
     CDS             complement(7470..8054)
                     /locus_tag="VLL95_15520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40319.1"
                     /translation="MENNTMTGLESLQLIDSMIKKARNRFSENGHLYLVWGWAIFIIT
                     LLQFVVIRMQWMTQPNMLWMLTFLPWIYMMIYLNKKNRTSGVRTYTEEIAGVVWLAFA
                     CMMFVAGFVLGQAKAFTLIYPVTLILYGMPTFISGYIIRFRPLMAGGIGCWVLAIVCS
                     KTPVEYQILFLTAAVLLAWIIPGYLMRQKHQTEK"
     gene            complement(8142..8783)
                     /locus_tag="VLL95_15525"
     CDS             complement(8142..8783)
                     /locus_tag="VLL95_15525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40320.1"
                     /translation="MKTRILFIAMLAGSMQLFAQQEKYMAFMKQNMAQLDTARTAAQF
                     QQAANNFERIANAEKSEWQPAYYCAYALVMKAYFGADRKEIDGLMDKADAMLALAESI
                     SPNNSEISTVKSMVLTARMQVDGSRGMTLGPKATEILQEALKQQPAHNPRAMVQMAQM
                     KFYTPPAFGGGKDAGIEMLKKGIAAYDSFKPASDLDPNWGKQYAIRLLEEWSK"
     gene            complement(8819..9082)
                     /locus_tag="VLL95_15530"
     CDS             complement(8819..9082)
                     /locus_tag="VLL95_15530"
                     /inference="COORDINATES: protein motif:HMM:NF024636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2TM domain-containing protein"
                     /protein_id="HSR40321.1"
                     /translation="MEENKDRQIWLVARQRAAFKRSLSSYFMVNTFLVAIWFFTTGGR
                     HHFWPIWPILGWGLAVGLQYLNAYHGTTFFSAEREYEKLKNNQ"
     gene            complement(9108..>9695)
                     /locus_tag="VLL95_15535"
     CDS             complement(9108..>9695)
                     /locus_tag="VLL95_15535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40322.1"
                     /translation="DYRHLIKFGSDTSAQGNGYARGFELFWRDKLTFKNFDYWITYSY
                     LDTKRDYLNFPYAMQPNFAAAHTANLVVKRFFSELNLQVNANYQFATGRPYYNIRYSA
                     AYGKWAVQDQGKTINYNNLSLSLNYLTNIGKAFGVVVFSMTNLLNSKQVFGYSFSFDG
                     TNKVPTLPPANRFIFLGLFLSWGVDRTQDAINNNL"
BASE COUNT         2637 a         2421 c         2283 g         2354 t
ORIGIN      
        1 gaaccggttg ttgattcgta gcaattcgga taccgcatac gccgatggat cattgtttaa
       61 atacactttt accgatacgg tttacctccc ctctcccatt ggccaaccac ttgccaatct
      121 tgccatcata ttgccaaaca atctgaatgg cacggatacc atctacgcag cattcaaaga
      181 tgttcccagc caatccacca tggcaatact cgcttcaaaa aaatcaactc acccggctgt
      241 tggtattgag aagacattag gatcgtcctc tttctggcaa ctgacattgc ttgtgtttgt
      301 gcaaatactt tttgtgacca tggtatacgg tcccattgcg gcattcctgg tggagatgtt
      361 cccaacgaaa atcaggtaca ccagcatgag ccttccctat catatcggca atggcatatt
      421 tggtggcctt gtcccctttc tcgccacact tatcgtagaa ttcacaaaaa cagctgaaaa
      481 cccagcgggc aatccattgg cagggctttg gtacccggtg ggtgtggcag cggtttgctt
      541 catcattggc agcatttacc tctccaacaa gatcgataac tatgtaatgg attgatcaac
      601 ctattcaata cctgaagaat gaatcaattg aagaaactac tcggaataat ctggatggca
      661 ctggcgcctg cactcatcgt tttcatgttt tggcaggcct atgaaaagat cagcacagct
      721 gctcctgccg ttaaatcaaa taccaccttg caatggttca tcatcctgct ggtgtttctg
      781 cccatctgcg ccggcttgtt cattttcgga ctgtttgcct ggaccaacga gtatgctcac
      841 ctgccggaga gcagcggcga aattgacgac tatgacatga gtccgattga ctaatgcatc
      901 tatcacagtc gggtataaaa tgccagttgt aaaatatgat tggcaatgtt ttcccgggag
      961 gaactgcgct tgatgtattg attcatgtat cccgtttcaa tatccatttt cgggctgatg
     1021 cgataaccaa tggccacgta ggcccggttc tgatcaaata catatccatt tactttatcc
     1081 aggttgacta cgttgcaaaa gatctcattt tgcagcgccg caaacattcc tttgccaaaa
     1141 gcaccgggtc ccttcttcaa gggaaggatg ctacgcagga aataacgcaa cctggcattg
     1201 aaaaaatcgc cttgcttctg cagttcgcca ttcaccacgc tcccttcagg aataatacgt
     1261 tcttccagcc tgaagcgatg ctgtaatcca atccgcttcg acaaggattg attgatgata
     1321 aactgctgcc agaatcggtg ctctgccaaa aggcccgact tgccctgaac ggtaacgcgg
     1381 ttggggatgt atgcatatcc cgcagtcaga attttgttgc ttccaaccat ccaattgatg
     1441 cctatgcggg gaagaatggt ctgcatcgcc gcgaggttat cggtgctgcg caattgcagt
     1501 tccgcatgca aactcgtttt ggccgacagg cggatggtat tgaaactggc gaaccatccg
     1561 ctttcctgca cctgttgtcc ccggctgagc atgcacagga acaacaatgg aattgaaaag
     1621 aattttttca ccacgcaaaa gtaggtgcaa ggcttttgcg aattattggc atgcaaacga
     1681 atatcttgcg gccaccatta tgtcaatcaa ggttaccggt cttttgaaat tgtacggcga
     1741 gcagcgtgcc gtaaacaaca tcagctttga agcttcaaag gggaagatca ccggcttttt
     1801 gggtccgaac ggggcgggca aaagcactac catgaaaatg gtgaccggct atttgcagcc
     1861 agatggcggc actgccagtg ttggtggcat cgatgttatt gaacagccca ttgaagcccg
     1921 gaaaaaaatc gggtacctgc ccgaaagcaa tgccttgtat accgacatgt acatcaggga
     1981 atacctcgat tttgtagcca acatctacga agtggccaac tacagagagc aaagagaatc
     2041 agtgattcaa aaagtaggac tggtaagcga ggcacataag aaaatcggtc aattgtcgaa
     2101 aggctacaaa cagcgggtgg gactggcagc ggccatcatt catgatccgg aagtgttgat
     2161 actggacgaa cctaccagcg gcctggaccc caatcaaatt gtggagatca ggcaggtgat
     2221 caaagaactg agcgccaata agaccatttt gctcagcacc cacattatgc aggaagtgga
     2281 agccatttgc gaccaggtga tcattatcaa caaaggcaat attgtggcca acgataccct
     2341 ggccaacctg ggcaaaaaca aatctaaccc ggccatccgg gtacaatttt tggagccatt
     2401 ggaaaaagaa tggctggccc gcatccccgg ggttttacaa gtggaaaaaa ttgacaccca
     2461 tacctgggaa attacctgct cccatgccgc ggaggggaga aaatccgtca tgcagatggc
     2521 actcgatcat aacctcacca tcaacagcct gcaacaaggc ggcagtctcg aagaggtttt
     2581 caggcaattg acgagccagg aaaagtcgaa tatttcctga taatattcat gcgcattcta
     2641 aagcagaagg ctgaaatttg ccatccctgc tacaacagga accataacaa gcaatcaatt
     2701 acaaaattca caaaaggaaa aaaccatgcc ttacattgcc aacatccatg ccaggcaaat
     2761 tcttgacagc cgtggcaacc ccactgtaga agtagacgta ctcaccgacg aaggcgcact
     2821 gggccgtgcc gccgttccaa gcggagccag caccggcatc catgaagccg tagaactccg
     2881 tgacggcgac aaaaagaaat acctgggaaa aggcgttctg aaagccgtaa agaacgtaaa
     2941 cgatattatt gccaatgaac tgatgggttg ggacattgcc gatcaaaccg gcatcgacaa
     3001 cctgatgatc caactggacg gtaccgccaa taaagccaaa ctgggcgcca atggcatcct
     3061 ggcagtgagc ctggcagtgg ccaaagcagc cgctgaagaa agcggactcc ctttgtaccg
     3121 ttatgtaggc ggcaccaacg ccaaagtgat gccagtaccc atgatgaaca tcctgaatgg
     3181 tggtgcgcat gccgacaaca aaatcgactt ccaggaattc atgatcatgc ccattggcgc
     3241 tccttccttc agcgaaggcc tgcgctgggg tactgagatc tttcatgcat tgaaaaacac
     3301 cctgaagaag aaaggctaca gcaccaacgt tggcgacgaa ggcggctttg ctcccaacat
     3361 ccagagcaac gaagaagcca ttgaaaccgt gctggaagcc attacagcag ctggctacaa
     3421 agcaggcacc caaatcaaga tcgccatgga tgccgccaac agcgaactgt gggacggcaa
     3481 gaagaaaaaa tatgtattcc acaagagcag tggcaaggaa atgaagagcg aagagctggt
     3541 gaaatactgg gaaaaatggg taaagcaata tcccatttgc agcattgaag atggcatggc
     3601 cgaagacgat tgggatggct ggaaagccct tacccaggcc attggcagca agtgccagtt
     3661 ggtaggcgac gacctctttg taaccaatgt ggcccgctta tcgcaaggca ttgaaaaagg
     3721 cattggcaat gcattgctgg tgaaggtgaa ccagattggt accctcactg aaaccatcaa
     3781 tgccgttacc atggcacagc atgccggcta caacaccatc atgagccatc gcagcggtga
     3841 aaccgaagac accaccattg ccgacctcgc cgtagccctt aattgcggcc agatcaaaac
     3901 cggatctgcc agccgtaccg acaggattgc caaatacaac cagcttttcc gcatcgaaga
     3961 aatgctggag gaaagcgcct actatcctgg caaaaacctc aagtttggca aataggccat
     4021 cctaaggaat aatcaaaaaa agcaatcgcc ccgcggttgc tttttttgtg caaatgtgga
     4081 caatggcact ggcctctccg gcgttgttgc atttgatatt tgtacctatg gaaatgctcc
     4141 ggtttatcag gaaggttttg ctcaacaagt atgtgctggc actggccgcc ttttgcacct
     4201 gggtgttgtt tttcgacaaa aacgactttt ttacccagcg ccagcgccat acagagttaa
     4261 ggatgctgaa ccagaaaatc acctactaca aggagcagat cgcagcagcc caaaaagagt
     4321 tgcgggcctt ggaaaacgac ccttccactc tggaaaaata tgcccgggag aagtattaca
     4381 tgaaaaggga caatgaggac atttacatca ttgaaacgcc ggaaaacccg ccgggtaagc
     4441 cctaaaaaat cgtctttcca aacaatattc gctggacaga catcgttatt atgcagttaa
     4501 ctcccctttc caacaaaaag gttactgcat gaacaatttt accccagaac aacttattgc
     4561 tttccattac aacgaactcc ccctggccga gcaggtgcaa atagccgatg cactggccag
     4621 caactgggca cttcaacaga agtatgaagt aattacctcc gccacttccc gccttgaccg
     4681 cgccgtgcaa aaggccccgg cacaggctgt agccaacgtg gtcaattatg ccaaagagtc
     4741 attggccctg tcggcaatgg agaactaatt ctgttttatt tcgttttcag gagcaaaaat
     4801 cgcgatgacc ataaaagaac ggtaccaggc agtaatcgac tacttccagg cccacgttcc
     4861 ggtggcagaa accgaactgc attacgacaa tccgtttcaa ctgctgattg ccgtggtgct
     4921 atctgcgcaa tgcaccgata agcgggtgaa tatggtaacc ccccggttgt ttgaaaggtt
     4981 cccggatccc gaatcgctgg ctgcctccca tttcgatgag ttgtttccgt acatccaaag
     5041 catcagctac ccaaacaaca aaacgaagca tttgctggga ttggccaaca tgttactggc
     5101 cgatttcaat ggacaggttc ctatgacagt ggaggagttg gtgaaattac cgggcgtggg
     5161 ccgaaaaacg gccaatgtaa ttaccagtgt aatagaccag caacccaata tggcagtgga
     5221 tacacacgtt ttcagggtga gccgccgatt gggattgacg cgaaatgcca gcaccccatt
     5281 ggctgccgaa aagcaactga taaaatacat tccgaccgat ttggtgcaca aagcgcatca
     5341 ttggctcatt ttacacggca ggtatacctg cctggcgaga aatccgaaat gccatgagtg
     5401 cggtttgcgg catacctgta aacattacca ggatggccaa aaaagattgg tacgcaatcg
     5461 tgccatgcat cacaaaaagg aaggaacagg aacaaattga tttattttgt tagggaaatt
     5521 gccatgcgca acaccggcaa acatatctta ctggcccacg cccttagcct ggcgttggtt
     5581 ttgctatgcc acaccaaatc tgttgcacag ggccgatttt actatgccaa tggtatacaa
     5641 gaaccggaac tgctgtttga actgggcatc accggcggtg ccatgaactg tgtaaccgat
     5701 attcaaggca acccacgtgt ttaccagggg ccattcgcag gagtcacctt aaagaacacc
     5761 aaccccactg tcggtttgta cggggcgggc atatggaagg atttcatcgg tgtaagattc
     5821 gaagtgaatt atggcatggt agaaggttac gacagtctgc tggacattgc cactgcacgt
     5881 agtgccatcg ggcgctatga tcgcaacctg aatttccgaa gcaagatcct cgaatttgcc
     5941 gtgacagcgg agttccatcc gctgcaggta ttccgatcat gggaacggga tgctccccgt
     6001 ttgtcaccct atgtttttgg agggctgtct gcattctatt tcaacccgca ggcatatact
     6061 gccaatggct gggttgattt gcggcctttg cgactggaag gccagggatt ttctgaatat
     6121 cctgaccgaa gagaatatgg taaatatgcc tttgcctatc cttttggcat cggtttgcgc
     6181 tacgatgtat caccgaaact cacccttcga ctggaagcca ataagcgtac cacctttaca
     6241 gactatctcg atgatgtaca tgaacccaac tgggtgaacc cggccttgtt cgacaaatac
     6301 cttcctccgg cacaagccgc attagccaaa cagttgtaca accggagcac caagcccaac
     6361 ctcatcattc cccaggatac ccgaccccgg ggtcacccct ccgaaaatga tgcattttgg
     6421 acagtagttt ttaaagtagg cttcaacctc aaccgctctg gttatggggg cggtggcggc
     6481 atgggcgcag gaggaaaagg agcagccaaa aaattaaggt gccccaattt ttaagtaggc
     6541 ttgtaaatct ttcacgtatt tctcaaaggc atcaatgccc tttggagtga tgctgcaaag
     6601 cgtttgcgga tagttgtcct tgaattgctt cttgatctca atatagccgg cctccttcaa
     6661 cttggtcaac tgcacactca ggttgcccgc tgtggcattc gttttctctt tcagaaaagt
     6721 gaattcagct tccttgacgc tgatcaacag cgacatcacg gccaaccgga gttgtgaatg
     6781 caatatggga tcgagatcat taaacatccg ctgcttcctt tctttttgcg caccttcttc
     6841 tcagcaccag gcctggtatg agccatgcag caatagccga caaggccatc aacaacatat
     6901 ctgtttcact gtcaacatac accaccaata ccgcactgac ccagcacacg attccgccaa
     6961 tcagcatggg cctgaaattc ttgatgccgg cagtgaccag ggtgggaatg ccatacaaca
     7021 ccaacaaata ggccggtgca taatcgctga aagagatgga tggccttgaa aggcccgcag
     7081 cctctatgct atctttcaga tcattaaagg cgttcctggt acctgcattg gcatgcacca
     7141 ccaggaaaat ggctatgcca aagcaagtcc aggtataatc catcgcggtt tgatcatagc
     7201 ttttcacttt tcttcttttt gaatccctgg ccgaccaata aatggtggct acgacagcga
     7261 gcaaagtgag cagccagata tcgaacggaa tgctccattg gaaatgaatt tgtgcccatg
     7321 tcaccaaaga acaaaaagaa atgatagtgc cccaaagtat agaccccgcc ccggtatcat
     7381 ggtaagaggt cttggccttg gcgatcatct cgctgatcat tgccaggctt tcctgttctg
     7441 tcattggttt ggactctttc atttggctgt cacttttcgg tttgatgttt ttgacgcatg
     7501 aggtaccctg gtatgatcca tgccagcaag acggcggccg tcaaaaacaa tatttggtat
     7561 tctacgggag tcttgctgca cacaatggcc aatacccaac atccgatacc tcctgccatt
     7621 aatggcctga accggatgat atacccggaa ataaaagtgg gcataccata cagtatgagc
     7681 gtaaccgggt atatcaatgt aaacgctttc gcctgcccca gcacaaaacc agcaacaaac
     7741 atcatacatg caaaagccaa ccaaaccaca ccagctattt cttcagtata agttctgacg
     7801 ccagaggttc ggttcttttt gttcaggtaa atcatcatgt atatccaggg caaaaaagtg
     7861 agcatccaga gcatgtttgg ttgggtcatc cactgcattc gaatgactac aaactgaagc
     7921 agtgtaatga taaaaatagc ccacccccat accaggtata aatggccatt ttccgaaaaa
     7981 cggttgcggg cctttttgat catggaatca atcaactgca ggctttccaa ccctgtcatg
     8041 gtattgtttt ccatttgatg actcggtttt tctactgtga tgaagataag tgcagctgcc
     8101 ctcgaaagag ggcaacttat acacaactaa ttccaacagg attactttga ccattcttca
     8161 agcaatcgga tggcatactg ctttccccag ttgggatcca aatcagaagc aggcttaaag
     8221 ctgtcatacg ctgcaattcc cttcttcagc atttcaatgc ccgcatcttt gcctccgcca
     8281 aaagctggcg gtgtatagaa tttcatttgt gccatttgca ccatggctct cggattgtga
     8341 gcaggttgtt gtttcagggc ctcttgcaat atttccgtgg ccttgggtcc aagtgtcata
     8401 cccctgctgc catccacttg catgcgggcc gtgagcacca tgcttttcac cgtactgatt
     8461 tctgaattgt tgggagaaat gctttccgct aacgccagca tggcatcagc cttgtccatc
     8521 aggccgtcta tctccttcct gtcggcacca aagtaggcct tcatcaccag ggcataggcg
     8581 caataatagg ccggttgcca ttcacttttt tcggcgttgg caatccgttc aaaattgttg
     8641 gcggcctgct gaaactgcgc tgcagtgcgg gcagtatcca actgcgccat gttttgcttc
     8701 atgaaagcca tgtacttttc ttgttgggca aaaagttgca tgctgcctgc cagcattgca
     8761 atgaacagga ttcgtgtttt cattggtttg atttggtgtg gtgattaaat agaattgatt
     8821 attggttgtt tttcagtttt tcgtactcac gttcggcaga aaagaaagtg gtgccgtggt
     8881 aggcattcag gtattgcagg cctactgcaa ggccccaacc cagtattggc catatgggcc
     8941 agaagtgatg acgacctcct gtggtaaaaa accagatggc caccaggaaa gtattgacca
     9001 tgaaatagga tgacaaacta cgcttgaacg ccgctcgttg cctggcaacc agccaaattt
     9061 gtcggtcttt gttctcttcc ataaaaattg ttttttgggt gaatgattca gagattattg
     9121 ttgatggcat cctgggtgcg atcgacgccc caactcagga aaaggcctag aaatatgaag
     9181 cggttggcgg gcgggagtgt gggcacttta ttggtgccgt caaaactgaa gctgtatcca
     9241 aatacctgct tgctgttgag caaatttgtc atgctgaaca caactacacc aaaggctttt
     9301 ccaatattgg tcaggtagtt caggctcagg ctgagattgt tgtagttgat cgtcttcccc
     9361 tggtcctgca cggcccattt tccatatgcg gcactatagc ggatgttgta ataaggcctg
     9421 cccgtggcaa actggtaatt ggcattcacc tgcaaattca gctcggagaa aaaccgttta
     9481 actaccaggt tggccgtgtg tgcagcggca aaattgggct gcatggcata aggaaaattc
     9541 aggtaatctc ttttcgtatc gaggtaggaa taggtgatcc aataatcaaa gttcttgaag
     9601 gtgagtttgt cgcgccaaaa caactcgaag ccgcgggcat acccattgcc ttgtgcactg
     9661 gtatcactgc cgaattttat cagatgccgg taatc
//
LOCUS       DATIQF010000898         2734 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_44466, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000898 DATIQF010000000
VERSION     DATIQF010000898.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2734
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44466"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..254)
                     /locus_tag="VLL95_15540"
     CDS             complement(<1..254)
                     /locus_tag="VLL95_15540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40323.1"
                     /translation="MKLPHSVRIVEQSTPARLAAAWLGSSKVAMVWGNRILLWGCSQE
                     EFLMNIPWVRHELKHVEQYQRLGLFPFLIRYTWYSIRYGY"
     gene            complement(307..678)
                     /locus_tag="VLL95_15545"
     CDS             complement(307..678)
                     /locus_tag="VLL95_15545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40324.1"
                     /translation="MKITHILGTVIAAGMLLAAACSKDSPSSNNNSGGGTANCSTVSA
                     QFSANVLPLILTKCSYNSGCHGTGSSNSGGALTNYTQIKARASNIKSQVNAGLMPQGG
                     SLSSAEKAIISCWVDAGGLNN"
     gene            complement(720..1181)
                     /gene="bcp"
                     /locus_tag="VLL95_15550"
     CDS             complement(720..1181)
                     /gene="bcp"
                     /locus_tag="VLL95_15550"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF006960.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HSR40325.1"
                     /translation="MALKTGRKAPAFSGTDQNGNKIALKDFKGKKVALYFYPKDDTPG
                     CTAQACNLRDNYKALQKAGIQVIGVSTDSVKSHKKFEQKYDLPFSLIADEDKKIVESY
                     GVWGEKKFMGRTYMGITRTTFLIDEAGKIAHIIDKPDTKNHTEEILEVLSA"
     gene            complement(1283..1642)
                     /locus_tag="VLL95_15555"
     CDS             complement(1283..1642)
                     /locus_tag="VLL95_15555"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HSR40326.1"
                     /translation="MTAWPQALSGFALTAVCIGITEEIIFRGVIFYILQKQSAPMCIL
                     FSSLAHAGYKTLLFLSPFAMQQVDFAQVFTYTFLAGLLLGSMRWYAASAASPIIAHAS
                     WDAMVYGDSPAAPWWVW"
     gene            complement(1962..>2734)
                     /locus_tag="VLL95_15560"
     CDS             complement(1962..>2734)
                     /locus_tag="VLL95_15560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40327.1"
                     /translation="FLRTESQLRSLYISNTDSILMAETVPALPNLKNIIYFFNGDSIS
                     TDAKYDQFLVNNPQLEKVCLLNWKADDDSINATGIIRPLKNIRELALDMPIDDSEILA
                     HKATLEKLMADNEYLQLQMPHLRWATISEQQSIFDSLVASNPNLQVLEINGPDNALDL
                     QNANQLKELQALNLVHADSTKISPLFQLKALKLLSYSLRKGDSDSTIQALRTALPNTL
                     VVPNDGFCVGSGYLMLFLPMLAIALLMAHRRQKRKPSI"
BASE COUNT          651 a          622 c          720 g          741 t
ORIGIN      
        1 tggtatccgt aacggataga gtaccaggta tagcgaatca aaaacggaaa gagacccagg
       61 cgctggtatt gttccacatg tttgagctcg tggcgcaccc atgggatatt catgaggaat
      121 tcttcctggc tgcaacccca gagcaggatt cgattgcccc acaccatggc taccttactg
      181 ctccccagcc aggcagctgc cagccgggct ggtgtggatt gctcaacaat gcgaacagaa
      241 tggggcagct tcatgcctgc aaaggaaatg aaaccaaccc atcagccaat agaagctcgt
      301 ggggcattag ttgttgaggc ctccggcatc cacccagcag ctgatgatcg ctttttcggc
      361 actgctcagc gatccgcctt gcggcatcag gccggcattc acctgcgatt tgatgttgct
      421 ggccctggcc ttgatttggg tataattggt aagtgcgcct cccgaattgg aggaaccagt
      481 gccgtggcag ccgctgttgt aggagcattt ggttagaatg agcggcagca cgttggcgct
      541 gaattgggca ctgacggtgc tgcagttggc ggtcccgccg ccgctgttat tgttgctact
      601 cgggctgtct ttggagcagg cagcggccag cagcatacct gctgctatta ctgtgcctaa
      661 aatgtgggtg atcttcatgg tttattgatt ggatgctgtg gccaaatgtt gctgaattat
      721 taggctgaca agacttccag gatttcttcc gtatggttct tcgtgtcggg cttgtcgatg
      781 atgtgggcta ttttccccgc ttcgtcgatt agaaacgttg tcctggtaat gcccatgtat
      841 gtgcgaccca taaatttttt ttcgccccac accccgtagg attccacgat tttcttgtct
      901 tcatcagcaa tgagcgaaaa cggcaggtca tatttctgtt caaatttctt gtggctcttt
      961 acactgtcgg tgctcacgcc aatcacctgt atgccggctt tttgcagcgc tttgtaatta
     1021 tcgcggaggt tgcaggcctg tgcggtgcaa ccgggggtat cgtctttggg gtagaaatac
     1081 aaggccactt ttttgccttt gaaatctttg agggcaatct tgtttccatt ctgatcggtg
     1141 ccggaaaagg ccggggcttt gcggccggtt ttgagtgcca tgttttccta ttggtttttg
     1201 gttataacga agcttgccat caattgttga ttcagtaaac tcaaagatgg gaaatgtgat
     1261 tacaggcagc agaaattttc ggttaccaaa cccaccacgg agcggcagga ctgtcgccgt
     1321 aaaccatggc atcccaactg gcatgcgcta tgattggtga tgcagccgat gcagcatacc
     1381 atcgcatgct gcccaaaagc aggccggcca agaatgtgta agtgaaaacc tgggcaaaat
     1441 caacctgttg catggcaaag ggtgaaagaa acagcaatgt tttgtacccg gcatgcgcca
     1501 atgaactgaa aagaatgcac atcggtgccg attgtttttg caggatgtaa aagatcacgc
     1561 cccgaaaaat gatctcttcc gtaataccaa tgcagacagc agtgagggca aatccggaaa
     1621 gggcctgagg ccaggccgtc attcccaaac ttgttcggta cgcgatgcca acaagtgggc
     1681 ccaatagcag cgccagaaca agcatagaac ttttattgaa gagcggtttg ggttcgctcc
     1741 agagggcacg aaggttgcct tgtatttgtg cgttgtaata caggatgaaa gacgacagca
     1801 gcaatcccgc ccaggcgata gattttgtaa ggttgacggc tgcaatgaaa cacgcaaaca
     1861 accaaatgcc tgccgtaaaa aggaggcaat aaatcgcagc ggatttgaag gatcttttcg
     1921 gcaatggctc tggttgatgg tcaaatggaa tcgtcattca ttcaaataga tggttttctt
     1981 ttttgtcgcc ggtgggccat tagcaatgct attgccagca tgggaaggaa cagcatcaaa
     2041 taacctgagc caacacagaa tccgtcattg ggcactacca gcgtgttggg cagtgctgta
     2101 cgcaatgcct ggatggtgga atcgctatcg cctttcctaa gtgaataaga aaggagcttc
     2161 aatgctttca actgaaagag cggtgaaatt ttggtgctgt cggcatgcac taaattcaat
     2221 gcctgcagct cttttaattg gttggcattt tgcaaatcga gagcattatc ggggccattt
     2281 atttctaata cctgcaagtt tgggtttgat gcaacaagac tgtcgaaaat ggattgttgt
     2341 tcactaattg tggcccagcg caaatgcggc atctgcaatt gcaggtactc attatcagcc
     2401 atcagttttt cgagcgttgc cttgtgcgcc aggatttcgc tgtcatctat cggcatgtcc
     2461 agcgccaatt ccctgatgtt tttcaatggt cgtattatgc cggttgcatt gatgctgtcg
     2521 tcgtccgcct tccagttgag gaggcaaact ttttccaatt gcggattatt gaccaggaac
     2581 tgatcatact ttgcgtcggt tgatatggag tcgccgttaa aaaagtaaat gatgtttttc
     2641 aggttgggta aggcgggaac tgtctcggcc attaaaatgc tgtccgtgtt cgatatgtat
     2701 aagcttctta attgcgattc tgttcgtaag aatt
//
LOCUS       DATIQF010000899         3894 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_44485, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000899 DATIQF010000000
VERSION     DATIQF010000899.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3894
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44485"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..197)
                     /locus_tag="VLL95_15565"
     CDS             complement(<1..197)
                     /locus_tag="VLL95_15565"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR40328.1"
                     /translation="MSLPGDNNGSILLVEDEENLHESLKMNLGLEGYDVVSAFDGKMA
                     LQKMKDEYFDLIILDIMLPEL"
     gene            complement(245..1219)
                     /locus_tag="VLL95_15570"
     CDS             complement(245..1219)
                     /locus_tag="VLL95_15570"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSR40329.1"
                     /translation="MPADRKKLALLTTGYWFLLAYIMAALVWWFISLEQQNNSMAALR
                     LSEISATDPDYGKKVDAVMDIKRRKHAQYVGEGVIFMLLIIVGAVFVYRATRRYLRLG
                     QQQHNFMMAVTHELKTPIAVARLNLETLQRRKLDAAQQEKLLQQALHETDRLNELCNN
                     ILLASRFDAGMTADHKEPIDFSSLILNCIEEFKKRFPEKTISVDIAEEVDVEGDALQL
                     KLLINNLLDNAHKYAPRDTAIHIKLQLEGGQARLQVADEGPGIAQEERSRVFEKFYRQ
                     GNEATRQKKGTGLGLYLAAKIAAAHGGSIGIEDNIPQGAVFTVTIPTA"
     gene            complement(1244..1762)
                     /locus_tag="VLL95_15575"
     CDS             complement(1244..1762)
                     /locus_tag="VLL95_15575"
                     /inference="COORDINATES: protein motif:HMM:TIGR03511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility lipoprotein GldH"
                     /protein_id="HSR40330.1"
                     /translation="MTKMTVARNRQAKPFIFLFIIAASLLLGVAGCKQNALYERLHNI
                     PEAKWQRTFIPSFSFNISDTTTSYRVYVVVRHTNQYPYRNIWLNVGVQQPQDSMRVQQ
                     FELPLAASDRWLGVGMDDVFERRVLLFPRPIKFPRSGEVKFTLQHTMRLDPLPDLLQV
                     GIRVEPVTNTQP"
     gene            complement(1766..2650)
                     /locus_tag="VLL95_15580"
     CDS             complement(1766..2650)
                     /locus_tag="VLL95_15580"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YicC/YloC family endoribonuclease"
                     /protein_id="HSR40331.1"
                     /translation="MAHILYSMTGFGRAENTAGEMQVLIEMKSLNGKQLDLNLKLPPL
                     LKSFEFDIRNLVNNTLARGSVDCSITIKMNGATRPVAINPDLIRFYYNSISHLAEELK
                     LDTSQILGALLKLPEVVLPVTEVLDDALWQVVKQTLEEAMKDLLLHRAEEGLALKADI
                     ESRIQNIRHHAAIIAELAPQRQVRLKENIERKLEEWVGKENVDANRLEQELIYYIEKM
                     DISEELVRLKNHCDYFFTILAEPDMGKGKKLGFLLQEIGREINTTGSKANDAEIQKSV
                     VLMKDELEKAKEQVLNIL"
     gene            complement(2783..>3894)
                     /locus_tag="VLL95_15585"
     CDS             complement(2783..>3894)
                     /locus_tag="VLL95_15585"
                     /inference="COORDINATES: protein motif:HMM:NF027726.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:2001070 - starch binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SusF/SusE family outer membrane protein"
                     /protein_id="HSR40332.1"
                     /translation="LTAGAFSKDLTQGEVNETALSENVAGGTQGKLQYRIKATTNLGT
                     IAYSNAWDLTIDTYVPILRFYMPGSYQAETGNGNNWDPGTAPELIRDVRPGLLNVMYY
                     IYIYLPAGAEFKVTQGRGWDVNYGGTGGTLAQNGDNFKVTSAGVYRVSIDRVNLKYNI
                     TAGRMGFVGEATGAGWDPGSTFPNYAGGLVGNNLFVGITDLKSGQWKLIDNNKWNDGS
                     NTVSETRSYGSAGGPGSVMEVNGANFQSVAAPGRYRVIWDGRNPDKIVYDMNAAAEMR
                     VVGDGLTGVNAWDPGASPQMTYLGNGVWRITLALTAGKDFKFLAGNAWGAFDYEDAGN
                     GRIKWDGGPNFKTPATSGTYTITLNEHNGTYTITP"
BASE COUNT          873 a          999 c          967 g         1055 t
ORIGIN      
        1 tccagttcgg gcagcatgat atcgaggatg atgaggtcga aatactcatc cttcattttt
       61 tgaagagcca ttttgccatc gaatgcactc actacgtcgt acccttcgag gccaagattc
      121 atcttcagcg attcatgaag attctcctcg tcttccacca ataaaatgct tccgttattg
      181 tcgccaggta aactcatgcc ttttgtgaat aatggtaaac tccggttgtt tcagttgctg
      241 caatttacgc agttggtatc gtaacggtaa aaactgctcc ctggggaatg ttgtcttcaa
      301 taccaatgct accaccatgg gcggctgcaa ttttggcggc aaggtacaaa ccaaggcctg
      361 ttcccttttt ctgccgggtg gcttcattgc cttgcctgta aaatttttcg aacacacggc
      421 ttctttcttc ctgcgctatc cccggccctt catcggccac ctgcagcctg gcttgtccgc
      481 cttccaattg caacttgata tgaatggcgg tatcacgggg tgcgtatttg tgggcattgt
      541 ccagcaggtt gttgataagc aatttcaatt gcaaggcatc gccttctacg tccacttctt
      601 cggctatatc aactgaaatg gttttttcag gaaagcgttt tttgaattct tcgatgcaat
      661 tcaaaatgag ggaggaaaaa tcgatgggtt ccttgtgatc ggctgtcata cccgcatcga
      721 agcgagaggc cagcaggatg ttgttgcaca attcattgag gcggtcggtt tcgtgcaagg
      781 cctgctgcag cagtttttcc tgttgggcag catccagttt tcttcgctgc aaagtctcga
      841 ggttgagcct ggctaccgcg atgggcgttt tcaattcgtg tgttaccgcc atcatgaaat
      901 tgtgctgctg ctgccccagg cgcaggtatc ggcgcgttgc ccggtacaca aacacagcgc
      961 ctacaataat gagcaacata aaaatgacgc cttcgccaac atactgtgca tgcttgcgcc
     1021 gcttgatgtc catcacggca tccacttttt taccatagtc aggatcagtg gcgctgatct
     1081 cggaaagccg cagtgcggcc atgctgttgt tttgttgttc gaggctgatg aaccaccata
     1141 ccagtgccgc catgatgtag gccaaaagaa accagtaccc ggttgtaagc agcgctagtt
     1201 tttttctgtc agctggcatt gcggcagcat atttatgaat gaattagggc tgtgtattgg
     1261 ttacaggttc taccctgata cccacctgca acaggtcggg caagggatcc aacctcatgg
     1321 tatgctgcag tgtaaatttt acttcaccag atcgcggaaa tttaatggga cggggaaaca
     1381 acaacaccct gcgctcaaat acatcgtcca tgcccacgcc cagccacctg tcgctggcgg
     1441 ccagcggcag ttcaaactgc tgcacccgca tgctgtcttg cggctgttgc acgcccacat
     1501 tcagccagat attgcggtaa ggatactggt tggtgtgcct taccactacg tacacacgat
     1561 acgaagtggt ggtatctgaa atattgaatg aaaaggaagg aatgaaagtg cgctgccact
     1621 ttgcttccgg aatattgtgg agacgctcgt ataaggcatt ttgtttgcag cctgccacgc
     1681 ccagcaaaag tgaagctgca ataatgaaaa ggaatatgaa aggctttgcc tgcctgttgc
     1741 gggccacggt catctttgtc atgaattaaa gaatgttcaa cacttgctct tttgcttttt
     1801 ccaattcgtc cttcatcaac accactgatt tctgaatttc ggcatcgttg gccttggagc
     1861 cggtggtatt gatttccctg cctatttcct gcagcaggaa accgagtttc ttaccctttc
     1921 ccatatcagg ttcggccaaa atggtgaaga aataatcgca gtggtttttc aggcgcacca
     1981 gttcttcgct gatgtccatt ttttcaatgt agtagatcaa ttcctgctcc agccggttgg
     2041 catctacatt ttccttgccc acccattctt ccagtttgcg ttcaatgttc tctttcaaac
     2101 gcacctgtcg ctgcggtgcc agctcggcaa tgatggcagc atggtgcctg atgttttgta
     2161 tccggctttc tatatcggct ttcagtgcca ggccttcttc ggcccggtgc aaaagcaggt
     2221 ctttcatggc ttcttccagc gtttgcttta ctacttgcca caaggcgtca tccagcactt
     2281 cggtcacggg cagcaccact tccggcaatt tcagcaaagc gccgagtatt tgcgaagtat
     2341 cgagtttcag ttcttctgcc aggtggctga tgctgttgta ataaaaccgg atgagatcgg
     2401 ggttgatggc taccggccgg gtggcgccat tcattttgat ggtaatggag caatcaacac
     2461 ttcctcttgc cagtgtgttg ttgaccaaat tccgaatatc aaattcgaaa gatttaagca
     2521 gggggggtag tttcaggttc aaatccagtt gcttaccgtt caacgatttc atttcgataa
     2581 gaacctgcat ttcaccggct gtattttcag cccggccaaa acccgtcatg gagtaaagta
     2641 tgtgtgccat attgccggta aatgtaggac gaactggttc gtgccgcaca gaaaagtaaa
     2701 ggagggctgc cggcattccc ccgcaaaaaa agaagggctg cttcttcccg aagcagccct
     2761 tgcattgttt agtggcacat catcatggtg taatggtgta agtgccgtta tgttcgttca
     2821 gtgtaatggt ataagtacca ctggtggccg gtgttttgaa gttaggaccg ccatcccatt
     2881 tgatcctgcc attgccggca tcttcgtaat cgaaggcgcc ccaggcatta ccagccagga
     2941 atttgaaatc cttaccagcg gtcaatgcca gtgtaattct ccaaacacca ttgcccaggt
     3001 aggtcatttg aggtgaggcg cccggatccc aggcattcac gccggtcagg ccatcaccta
     3061 ccacccgcat ttcagcagcg gcgttcatgt catacacaat cttgtccgga ttgcgaccat
     3121 cccagatcac acggtagcgg ccaggagcag ctactgattg gaagttggcg ccatttacct
     3181 ccattacaga gcccggacca ccggcagaac catagctgcg tgtttcgctt acggtgttag
     3241 atccatcgtt ccatttgttg ttgtcgatca gcttccactg gccactcttc agatcggtaa
     3301 tgccaacaaa caggttgttg cctaccaaac cgccagcata gttggggaag gtgctgcctg
     3361 gatcccagcc ggcaccggta gcttcaccca caaagcccat gcggccagcg gtgatgttgt
     3421 atttgaggtt cacacggtcg atagaaacac ggtatacacc agcggaggtt actttaaagt
     3481 tgtcgccgtt ctgggccagt gtaccacccg tacctccgta gttcacatcc cagccgcggc
     3541 cttgggtcac cttgaattcg gcaccggcgg gcaggtagat gtagatatag tacatcacgt
     3601 tgagcaaccc gggacgaaca tcacggatca actcaggagc agtaccggga tcccagttgt
     3661 tgccgttgcc tgtttcggcc tggtagctgc cgggcatata aaagcgcagg atgggcacat
     3721 aagtatcaat ggtcaaatcc caggcattgg agtaggcaat tgtgcccagg ttggtagtgg
     3781 ccttgatgcg atactgcaat ttgccttggg taccacctgc cacgttttcg ctgagggcgg
     3841 tttcattcac ttcgccttgg gtaaggtcct tgctgaatgc gccggcggtc agtg
//
LOCUS       DATIQF010000900         2710 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_181584,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000900 DATIQF010000000
VERSION     DATIQF010000900.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2710
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181584"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..960)
                     /locus_tag="VLL95_15590"
     CDS             complement(<1..960)
                     /locus_tag="VLL95_15590"
                     /inference="COORDINATES: protein motif:HMM:NF013832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40333.1"
                     /translation="MTLTVAIAGFSACAAVIFFAGKKLSFYGDLLADKTGMGKALLGL
                     VLMSAVTSLPELMVGISSVAIVQSADLAVGDILGSFAFNLAILSVMDAFVPRRTALLG
                     NVSQHHIIAAAFGLILIALAGMGIFLDNDIVLTSFIGLNSVVFALIYFVALSVIFKYQ
                     QQNKIIAAHSQASVSMPLKSIVLRYILFAVIIIAAALFLPQFADQLAEQSGLGKTFVG
                     TLFLAASTSLPELAVSIAAVRLGSIDMAVGNLLGSNIFNIFILFLDDLFYQKGHLLKD
                     AAESHLASVFAVLIMTGIVIVGITFKAKGKRHWLAWDTLLILIV"
     gene            complement(1115..>2710)
                     /locus_tag="VLL95_15595"
     CDS             complement(1115..>2710)
                     /locus_tag="VLL95_15595"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HSR40334.1"
                     /translation="QAADPKLVALSVPFPGNLFSSLRMAQYLRSTYPHIKVAMGGGFA
                     NTELRSLSDPRVFEFYQFITLDDGERPLEQLLQFMEGHIAAAELKRCFLLEEGKVQYK
                     DNKACSDYKMAAVGTPDYSDLLLDSYINAIEIANPMHSLWSDGRWNKLTMAHGCYWGK
                     CTFCDISLDYIKNYEPLAASQIVDRMEQMIAQTGLNGFHFVDEAAPPSLMKALSLEIL
                     RRGINVAWWTNIRFEKSFTRDLCFLLKAAGCIAVSGGLEVASDRLLQLINKGITVAQV
                     ARVNQHFTEAGIMVHAYLMYGFPTQTAQETIDSLEMVRQMFEAGILQSGFWHQFAMTA
                     HSPVGLAPEKFGVKAVIPFTPSFADNDVVHEDPTGTEHELFSEGLKKSLHNYMHGVGF
                     DVPLFKWFEHKSPKTNVAPDFIRRQLQAPEPEPLRSNARVVFYGCLPSVEYFVKTKKG
                     SSWTMASLCFETNSKTLRISVPEEQGKWLHALLQKVHISQPKPMTLQQVKADYEAAGL
                     EHFELFWDNKPVTNLYQAGLWLL"
BASE COUNT          676 a          670 c          723 g          641 t
ORIGIN      
        1 cacaatgagg atcagcaagg tatcccatgc cagccaatga cgtttgcctt tggctttgaa
       61 cgtgatgcca acgataacga tgcctgtcat gatgaggact gcaaacactg atgccaaatg
      121 actttcagcg gcatccttca acaggtgacc cttttggtaa aagaggtcgt cgagaaacaa
      181 aatgaagatg ttgaaaatat tactaccgag caggttaccc actgccatgt cgatagatcc
      241 cagccgcact gcggcaatgg aaacggccaa ttcgggcagg gaagtggagg cagccaggaa
      301 caaagtgccg acgaaggttt tccctaatcc cgattgttcg gccagctgat cggcaaattg
      361 gggcagaaaa agagctgctg caattatgat gacggcgaag agaatatagc ggagcacgat
      421 gcttttcaag ggcatggaaa cactggcctg gctgtgtgcc gcgataattt tgttttgctg
      481 ctggtattta aagatcacac ttaatgctac gaaatagatg agggcgaata ccacactatt
      541 gaggccgatg aatgaagtaa gcacaatgtc attgtcaaga aaaataccca taccggcgag
      601 ggctatgaga ataagaccaa atgcggcggc tatgatgtga tgttgtgaaa cgttgcccag
      661 gagtgcagtt cgccttggaa caaaagcatc catcacggaa aggatggcca ggttgaatgc
      721 gaaactgccc aaaatatctc ccacagccag gtcggcagat tgtacaatgg caactgaact
      781 gatgcctacc attaattccg gcaacgaagt aactgcactc ataagtacca ggcccagcaa
      841 cgctttgccc atgcctgttt tgtcggcaag aagatctcca tagaatgata atttcttgcc
      901 ggcaaaaaat atgactgcgg cgcaagctga aaatccggcg atggcaacag tcagtgtcat
      961 atcatttctt tcagatactt agggtgaaca actgggcagt cgtgaagaaa gtatgaaatt
     1021 aacaggtgtc caatgagaat ggtcaggcag ggtggcacta ccatgtaatg acctgttaaa
     1081 ttgtaatgaa aagcagcccc tgatggcgaa gacatcacag cagccaaagg ccggcctggt
     1141 acaaattcgt cacgggcttg ttgtcccaaa acaactcgaa gtgttcgagg cctgcggctt
     1201 cgtaatccgc tttcacctgt tgcagcgtca tgggctttgg ctggctgatg tgtacttttt
     1261 gcagcaaagc atgcagccat tttccctgct cttccggtac gctgatgcgc agggttttgc
     1321 tgttggtttc aaaacatagc gaagccatgg tccagctgct gcctttcttg gtttttacaa
     1381 aatattcgac agaaggaagg cagccataaa ataccaccct ggcattgctg cgcaagggtt
     1441 cgggttccgg cgcctgcagt tgacgacgaa tgaaatcggg cgctacgttg gttttaggtg
     1501 atttgtgttc aaaccacttg aacagcggca catcaaagcc cacgccatgc atgtaattgt
     1561 ggagcgattt tttcaggccc tcgctgaaca actcgtgttc ggtgccggtc gggtcttcat
     1621 gcactacatc gttatcggca aaactggggg tgaaagggat taccgctttc acgccaaact
     1681 tctcgggtgc caggcccacg gggctgtggg cggtcatggc gaactggtgc cagaaacccg
     1741 attgcaggat gcccgcttca aacatctgcc gcaccatttc cagcgagtcg atggtttcct
     1801 gcgctgtttg cgttgggaag ccatacatga ggtaggcatg caccatgatg ccggcttcgg
     1861 taaaatgctg gttcacccgg gctacctgcg ccacggtaat gcctttgttg atgagttgca
     1921 ggagtcggtc gctggccact tccagcccgc cgcttacggc tatgcagccg gccgctttca
     1981 gcaaaaagca gaggtcgcgg gtaaaactct tttcaaaacg gatattggtc caccaggcta
     2041 cattgatacc acggcgcagt atctccaggc tcaaggcttt catcagcgag ggaggtgccg
     2101 cctcatccac aaagtgaaaa ccattcagcc cggtttgggc tatcatttgc tccatgcgat
     2161 ccacgatctg tgaagccgcc agtggttcat agtttttgat gtagtcgagg ctgatgtcgc
     2221 aaaaggtaca tttaccccag tagcacccat gcgccatagt gagtttgttc cagcgcccgt
     2281 cgctccacag gctgtgcatg gggttggcta tttcaatcgc gttgatgtag ctgtccagga
     2341 gcaggtcgct gtagtcgggt gtccccacgg ccgccatttt ataatcgctg caggctttgt
     2401 tgtctttgta ctgcactttg ccttcttcga gcaaaaaaca tcgcttcaat tctgcagcgg
     2461 ctatgtggcc ctccatgaat tgcagcagtt gttccaaagg acgttcgccg tcatccagcg
     2521 tgatgaactg gtaaaactca aatacccggg gatcgctcag gctgcgcaac tcggtattgg
     2581 caaagccgcc acccatggcc actttgatgt gcggataggt actccgcagg tattgggcca
     2641 tgcgcagcga actgaacagg ttgcccggaa agggtactga caaggccacc aatttggggt
     2701 cggctgcctg
//
LOCUS       DATIQF010000901         1702 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_166371,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000901 DATIQF010000000
VERSION     DATIQF010000901.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166371"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1203
                     /locus_tag="VLL95_15600"
     CDS             <1..1203
                     /locus_tag="VLL95_15600"
                     /inference="COORDINATES: protein motif:HMM:NF014961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 dependent-methionine synthase
                     activation domain-containing protein"
                     /protein_id="HSR40335.1"
                     /translation="AHEMKRRGMTQPLLIGGATTSRMHTAVKIAPQYEHGVVHVLDAS
                     RSVTVAGSLLNNETRQGFLDNIRGEYDKLAESFHAKKVVKNYLSLADAQQNKANINWE
                     GYTPPSPTFTGTKVISDVTVETLRSYIDWKPFFIAWEMHGNFPDILSDKIVGAEATKL
                     YNDANALLDKVAAEKWLTPKGVVGFWPAQNRGDDVELQHNNQPTTLNFLRQQAQKAAG
                     QPNYSLADFISQEPGDHIGAFAVTIQGLEKWITKFEADHDDYNKIMLQALADRLAEAF
                     AEYLHEKVRKEYWGYQKDETLSNEQLIKEEYVGIRPAPGYPACPDHTEKYKLFELLNA
                     SEATGITLTESLAMYPASSVCGWYFSHPQSQYFGIGKIQPDQLEDYARRKGEPIEFAE
                     KWLRPVLE"
     gene            complement(1285..>1702)
                     /locus_tag="VLL95_15605"
     CDS             complement(1285..>1702)
                     /locus_tag="VLL95_15605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40336.1"
                     /translation="DRKGSGMFSASASFQTMGRWGFGIDAVYGKTEAIFKYPNTSTQE
                     PQSKWFTVMGRVNYTYYTDVVNAPNIQLYGGIAAGSSFRDTQVEKGGSTKTFNQNYFA
                     YQITPFGIRTGQKIGFWAELGYGFKGLLNAGLSLKF"
BASE COUNT          474 a          448 c          413 g          367 t
ORIGIN      
        1 gcgcatgaaa tgaaacgccg cggtatgacg cagcctttgc tcattggcgg cgctaccacc
       61 agccgtatgc acacggccgt aaaaattgca ccgcagtatg aacatggcgt ggtgcatgtg
      121 ctcgatgcca gccgcagcgt aaccgtggcc ggcagcttat tgaacaacga aacccgccag
      181 ggctttctcg acaacattcg cggcgagtac gacaagctgg ctgaaagctt ccatgccaaa
      241 aaggtggtaa agaattacct gagcctggcc gatgcgcagc aaaacaaagc aaacatcaac
      301 tgggagggat atacgccacc gagcccaaca ttcacgggca ccaaagtgat cagcgacgtg
      361 acagtggaaa cactgcgcag ctatatcgac tggaagccct tcttcattgc ctgggaaatg
      421 catggcaatt tccccgatat cctcagtgac aaaattgtgg gcgcagaagc caccaaactc
      481 tacaacgatg cgaatgcatt gctcgataaa gtagctgctg aaaaatggct gacgcccaaa
      541 ggcgtggttg gtttttggcc cgcacaaaac aggggagatg atgtggagtt gcagcacaac
      601 aaccagccaa ccacactcaa cttccttcga caacaggcac agaaagcagc ggggcaaccc
      661 aactattcat tggccgactt tatttcgcag gaaccgggcg atcatatcgg cgcctttgca
      721 gtcaccatcc agggattgga aaagtggatc acgaaatttg aagcggacca cgacgactac
      781 aacaagatca tgctgcaggc attggccgac cgcttggcag aagcctttgc cgaatacctg
      841 catgagaaag tacgcaaaga gtactggggc tatcaaaaag atgaaacgct gagcaatgag
      901 caactcatca aagaagaata tgtcggcatt cgccctgctc cgggttatcc cgcctgcccc
      961 gatcatacag aaaaatacaa actgttcgag ttgctgaatg cttctgaagc cacaggcatc
     1021 acgcttaccg aaagcctcgc catgtacccg gcatcttcgg tgtgcggctg gtatttcagc
     1081 catccgcaaa gccagtattt cggcatcgga aaaattcagc ctgaccagct ggaagattat
     1141 gcccgtcgca aaggagagcc cattgagttc gcagaaaaat ggctgcgccc ggtattggaa
     1201 taaaaacgcc aacagtaaac aaataaaaat gccgcccctg catccaaggg cggcattttt
     1261 attttctggt tacaaaaacg ttgatcagaa cttcaggcta agccccgcgt tcagcaggcc
     1321 tttgaagcca taacccagtt cggcccagaa acctattttt tgcccggtac ggataccaaa
     1381 tggtgtgatc tggtaggcga aataattttg attgaaagtt ttggtgctgc ctcctttctc
     1441 cacctgcgta tccctgaatg aactacccgc ggcaatgccg ccgtacaatt gaatgttggg
     1501 cgcatttaca acgtcggtat aataggtata gttgacacgc cccattactg tgaaccattt
     1561 gctttgcggc tcttgtgttg aggtattcgg gtatttgaaa atggcttctg ttttgccata
     1621 aaccgcatcg ataccaaatc cccaacgacc cattgtttga aacgaagcgc tggcactgaa
     1681 catgccagat ccttttctat cc
//
LOCUS       DATIQF010000902         7372 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_44493, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000902 DATIQF010000000
VERSION     DATIQF010000902.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7372
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44493"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..632)
                     /locus_tag="VLL95_15610"
     CDS             complement(<1..632)
                     /locus_tag="VLL95_15610"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR40337.1"
                     /translation="MSQPTKPTNYGALGTLVIVFFFWGFIAASNSILIPFCKTHFALT
                     QFESQLLGSAFYVAYFVGSLVLFVVSNAIGTDIVNKIGYKRGIIYGLFISVIGALLII
                     PSANANSYYAILGSLFIVALGFSLQQTCAQPFAISLGDPATGSHRLNLGGGVNSLGTT
                     LGPIIVSFFLFGSIGEGVKDVTVKNINNLYLIVAAVFAAVALVFLFSKLP"
     gene            804..2222
                     /locus_tag="VLL95_15615"
     CDS             804..2222
                     /locus_tag="VLL95_15615"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: protein motif:HMM:TIGR02095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004373 - glycogen (starch) synthase
                     activity [Evidence IEA];
                     GO_function: GO:0009011 - starch synthase activity
                     [Evidence IEA];
                     GO_process: GO:0005978 - glycogen biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase"
                     /protein_id="HSR40338.1"
                     /translation="MEIIHVSAECYPVAKAGGLGDVVGALPKYQNKLGHVAKVVMPMY
                     RTPFLYNNEWELVHESGSYLGSTWFKYAVIREKTNKLGFDLYLVDIDGLLDREKVYGY
                     EDDTERFVSFQIAVVHWLNSWEHQPDVVHVHDYHAGLIPFMMKYCHGLQKLRNTKTVL
                     TIHNAQYQGWMGWEKSHYIPSFDNWKSGMLDWENTINPLASAVKCADLVTTVSPSYME
                     ELRESANGLEMLFEFEKGKCVGILNGIDNEVWNPATDPLILANYSIKTVQEGKAKNKA
                     EICKAFSLDPSLPLFIFIGRLVGEKAAEILPYVVGESVAMHQQQINFVVLGSGETELE
                     YQLTELQKMIPGNFGCYIGYNEKLAHQLYAGADFLLMPSRVEPCGLNQMYALRYGTVP
                     MVRNTGGLRDTVIDIGEPGFKGFGLVFNHATAFEVNESIHRAMGWYAEKQDILEASRK
                     KMMAIDHSWERSAQEYLELYKS"
     gene            2289..3563
                     /locus_tag="VLL95_15620"
     CDS             2289..3563
                     /locus_tag="VLL95_15620"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: protein motif:HMM:NF002772.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008878 - glucose-1-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0005978 - glycogen biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HSR40339.1"
                     /translation="MAKSTVAVILGGGAGTRLYPLTATRSKPAVPIAGKYRLVDIPIS
                     NCINSSINRIWVLTQFNSASLNKHIKNTYQFSQFSHGFVDILAAEQTPDNPGWFQGTA
                     DAVRQSLRHIQQHESEFVLILSGDQLYQMDFQAMIDKHRSSGAQISIATIPVGDREAP
                     EFGIMKVDDNGMINSFIEKPKKDVLPDWVSDTGDEMKAQGRNYLASMGIYIFDRKLLF
                     DLLLEEYENSTDFGKEIMPNSITKYKVASYQYDGYWTDIGNIYSFFEANLALTNDIPP
                     FNLYDKTQTIYTRARMLPPAKISGTTLEKTIIAEASIINASRIENSVIGIRSRIGHGT
                     TIVSCYMMGADFFETIEEMADSAKKGIPNIGVGQRCYIKNCIIDKNCRIGDDVKIIGG
                     NHLEATDHALYTIKDDIVVLKKNAIIPNGFQL"
     gene            3711..5060
                     /locus_tag="VLL95_15625"
     CDS             3711..5060
                     /locus_tag="VLL95_15625"
                     /inference="COORDINATES: protein motif:HMM:NF024742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR40340.1"
                     /translation="MAAPASSTGSKSSSLKPKLSFWQIWNISFGFLGVQIGYSLQNAN
                     TSRILSAIGADPHHLSLFWLAAPVAGLIVQPIVGLSSDKTWTRLGRRIPFILGGSIVS
                     AAAMFFMPNSENFAAILPPLVFGATMLLLMDTSFNVTMQPFRALVSDMVPDSQRTKGY
                     SVQSFLINAGAVVGSLLPFLLTAWGVANEPAPGDKVAPTVIWSFYFGGAALLLSVIWT
                     SMRTKEYPPKEYALYNNISDEDAAQKTSFLQLLKQTPTTMLQLAVTQFFSWFSLFLMW
                     VYTTNGIAQSIWGTTDPKSAEFNEAGNWTGVIFAAYSVFAALYSLVLTRISDKFGRKN
                     TYAISLIAGGIGLLSMVFIKDKNLLFLSMIGVGIAWAAILAMPYAILSSALPAKQTGV
                     YMGIFNATITIPQIVAGLLGGVALTALGGNAINVIGLAGASMAVAGILAKIVIKATN"
     gene            5083..6972
                     /locus_tag="VLL95_15630"
     CDS             5083..6972
                     /locus_tag="VLL95_15630"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HSR40341.1"
                     /translation="MKSARLKYLCQLAWVLFFSSAALQAQETEIYPSHWWTGMKWNQV
                     QLLVHSKNINAAQPKVAFNYPGVSVKKVTRTESPNYIVVDINVTPAAKPGTINMNIES
                     GSNKWQLYYQLKPRRKGLGSSYANGVNSADLVYLVMPDRFANGDTSNDRIAGYKDEIA
                     DRKNPSAHHGGDMQGIIKQLPYLKDLGVTALWMCPVTENDMPWKQESAGAISGYHGYW
                     ITNHYKIDKRYGGPDVYKQLVEASHQSGIKVIQDAVYNHVGDEHFLFKDKPFADMFNN
                     WPAYTGSNHREESLFSGYTNQNDRKVMLEGWFTPHLPDINLRNPYMANFLIQNSIWCT
                     EEFGIDGWRVDTYKYCDEAFMNRVNSALINEFPTLSIFGEAWANTVTGSAYFTKNNMK
                     VSFKHNLPGTTDFPMQSAMLSAINQDFGWTEGANRLMMTLAQDVLYEDPKRNCIFLDN
                     HDVDRYLTMIGGDLNKYRMGIGLLLTMRGIPQLYYGTEILLKNDDVQGDGKKRNDFPG
                     GFHGDAQNKFTAQGRNAAENEAFTFVKTLAQFRKQSKALAIGNTIDYLPQNGVYAYAR
                     KAGNETVFCILNQTKEIKTVDADRYKQVFSGYKNATDIVNGNFFELKGEWQIPPQSIL
                     VLALK"
     gene            complement(7010..>7372)
                     /locus_tag="VLL95_15635"
     CDS             complement(7010..>7372)
                     /locus_tag="VLL95_15635"
                     /inference="COORDINATES: protein motif:HMM:TIGR01200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GLPGLI family protein"
                     /protein_id="HSR40342.1"
                     /translation="EWRITDETRTIAGFDCRKAVGKMFDSLYVVAFYTDQIVTPAGPE
                     QYNGLPGTILGLAFPRFYTTWFATKVELVQPKPDELKPPVAKATKINRKELMARVVNV
                     FEWGSEEERQKNFWNTVL"
BASE COUNT         2114 a         1809 c         1739 g         1710 t
ORIGIN      
        1 tcgggcaatt ttgaaaacag gaagacgagt gcaaccgcag caaacacagc cgctacgatc
       61 aggtacaggt tgttgatgtt tttaacggta acgtccttaa ccccctcgcc tatcgaacca
      121 aacaaaaaga agctcacgat gatgggcccc agggtggtac ccaaagaatt cacgccacca
      181 cccaggttca aacgatgcga tccggtggcg ggatcaccca gcgaaatggc aaatggttgg
      241 gcacaggttt gctgcaatga aaatcccaaa gcaacaataa acaaggatcc aagtattgca
      301 taataggaat tggcattcgc tgaaggaatg atgagcaagg cgccaattac actaataaac
      361 agaccataaa taataccccg cttgtatcca atcttattta cgatatctgt tccaatggca
      421 ttggatacca caaacagcac taaggagcca acaaaatagg cgacataaaa agctgatccc
      481 aacaactgcg attcaaactg tgtcagcgca aaatgggttt tgcagaaagg gataaggata
      541 ctgttggaag ctgcgataaa tccccagaag aaaaatacaa taacaagtgt gcccagtgca
      601 ccgtaattag taggcttggt tggttggctc atacagcaat tattgaagag gtaatgcggt
      661 aaaaatagcc gcttttaatg tctaaaaaat tttttatgct catattgtgg aagtaaatct
      721 tggcctaaat tgtccgtcca agattttcag agcctttgtc accattggct ccactaacca
      781 ttcatttttt aattcaatca tacatggaaa ttattcacgt aagtgccgaa tgctaccctg
      841 ttgccaaagc aggaggactg ggagatgtgg tgggcgccct gccaaaatac caaaacaagc
      901 tgggccacgt ggccaaggtg gtaatgccca tgtatcgcac gcccttcctg tacaacaacg
      961 aatgggaact ggtacatgaa agcggctctt acctgggcag cacctggttc aaatatgccg
     1021 tcatcaggga gaaaacaaac aaattggggt ttgacctgta cctggtggat attgacgggc
     1081 tgctggaccg ggagaaagta tacggctacg aggatgacac cgaacgattc gtcagttttc
     1141 aaattgcagt ggtgcattgg ctgaacagct gggagcacca gcctgatgtt gtacatgtgc
     1201 acgattatca tgcaggactc attcctttta tgatgaaata ttgccatgga ttgcaaaaac
     1261 tgcggaacac taaaaccgta ttgaccatcc acaacgctca ataccagggc tggatgggct
     1321 gggaaaagag tcattacatc ccctcgtttg acaactggaa aagcggcatg ctcgattggg
     1381 agaataccat caaccccctg gcttcagccg taaaatgtgc ggacctggtg acaacggtaa
     1441 gccccagcta tatggaggag ctgcgggaga gcgccaatgg actggaaatg ctgtttgagt
     1501 ttgaaaaagg caaatgcgtt ggcattctca acggcatcga caatgaagta tggaacccgg
     1561 ccaccgaccc gctgatcctt gccaattatt ccatcaaaac ggtgcaggaa gggaaagcca
     1621 aaaacaaggc ggaaatctgc aaggccttta gcctggatcc ttcgctcccg ctgttcatat
     1681 tcatcggtcg tttggtaggt gaaaaagcag ctgagatcct gccctatgtg gtgggcgaat
     1741 ccgttgccat gcaccagcag caaatcaatt tcgtggtact gggcagcggc gaaaccgaat
     1801 tggaatacca actgaccgag ttgcagaaaa tgattcccgg caactttgga tgctacattg
     1861 ggtataatga gaaactggcc caccaactct atgctggtgc cgattttctg ctgatgccca
     1921 gccgggttga gccttgcggc ctcaaccaaa tgtatgcttt gcgctatggc acagtaccta
     1981 tggttagaaa taccggcggc ctccgtgata ccgtaatcga cattggtgaa cctggtttca
     2041 aaggctttgg gctggtgttt aaccatgcca ctgcgttcga ggtaaatgaa tccatacaca
     2101 gggccatggg ctggtatgct gaaaagcagg atatccttga agcttcaaga aaaaaaatga
     2161 tggcaataga ccacagttgg gaaagaagtg cgcaagaata tttggaactt tacaaaagtt
     2221 agagggtctc cgaactggaa tgacaattat attcaccgaa tccgtaaaaa ctgaataaaa
     2281 cgatgactat ggctaaatca actgttgcag taatattagg cggcggagca ggaaccaggc
     2341 tatacccact taccgcaacg cgaagcaagc ccgcagtacc cattgcaggc aaataccggt
     2401 tggtagatat ccccatcagc aactgtatca acagcagtat caaccgcatt tgggtgttga
     2461 ctcaattcaa cagcgcttca ctgaataagc acatcaagaa cacttatcaa ttcagccagt
     2521 tcagccatgg ctttgtagat attctggctg ctgaacaaac accggataac ccaggatggt
     2581 tccagggcac agccgatgca gtgcgccaga gcttgcgcca tattcaacag cacgaatcag
     2641 aatttgtgct catattgagc ggcgaccaat tgtaccagat ggacttccag gctatgattg
     2701 acaagcacag atcttccggt gcccagattt ccatcgccac catacctgtg ggcgacaggg
     2761 aggctcctga atttggcatc atgaaagtgg atgataatgg aatgatcaac tcttttattg
     2821 aaaagccaaa gaaagatgtg ttgcctgact gggtgagcga cacaggggat gaaatgaagg
     2881 cccagggcag aaactacctc gcctccatgg gcatttacat tttcgacaga aaactgctat
     2941 tcgacctgct gctcgaagaa tatgaaaact cgaccgattt cggcaaggag atcatgccca
     3001 actccatcac caaatacaag gtggcttctt accaatacga cggctactgg accgatattg
     3061 gaaatatcta ttcattcttc gaagccaacc tggccttgac caatgatatc ccgccattca
     3121 atttgtacga taagacgcaa accatttaca ccagggcccg catgcttcca ccggccaaaa
     3181 taagtggcac caccctggag aagaccatca ttgccgaggc cagcattatc aatgccagcc
     3241 gcattgaaaa cagcgtgatt ggcatccgga gccgaattgg gcacggcact acaatcgtaa
     3301 gttgctacat gatgggggcc gatttcttcg aaaccattga agaaatggct gattccgcaa
     3361 agaaagggat accgaatatt ggggttggac agcgctgtta tatcaagaac tgcatcatcg
     3421 acaaaaactg ccggataggc gatgatgtaa agatcatagg tggcaaccac ctggaagcta
     3481 ccgaccatgc gctatacacc atcaaagacg atattgtagt gctgaaaaag aatgcgatca
     3541 taccaaacgg tttccaactt taaataaaac tgctgagtac cgaagccaga gccctttttt
     3601 gagggctctg gtcattttag ggctcaattg tgtaaagaat acacgaataa aaaaattgcc
     3661 tacattgcga agcccgtttt agtacattca tacctaatca acgattgctt atggcagctc
     3721 ctgcatcatc aaccggttca aaatcatcca gcctgaaacc caaactgagt ttctggcaaa
     3781 tctggaacat cagctttgga tttctcggag tacaaattgg atattcattg caaaatgcca
     3841 acaccagcag gatactttca gccattggtg ccgacccgca ccacctgagc cttttctggc
     3901 tggcagctcc cgtggcaggt ttgattgttc agcccattgt aggcttgtcg agtgataaaa
     3961 catggacccg gttgggaagg cgcatacctt tcattctggg tggttccatc gtgtcggcgg
     4021 ccgccatgtt tttcatgccg aattctgaaa attttgcagc cattctgccg ccgctggtat
     4081 ttggcgccac catgctgctc ctgatggata cctccttcaa tgtgaccatg cagccgttca
     4141 gggcactggt tagcgatatg gtgcccgatt cgcaacgcac caaaggttat tccgtgcaaa
     4201 gctttctcat caatgccgga gccgtggtag gatcactgct tccttttttg cttactgcat
     4261 ggggcgttgc caacgagccg gcacccggcg acaaggtagc gccaacggtc atctggtcct
     4321 tctattttgg tggcgctgcg cttctgctga gcgtgatatg gacatccatg cgcaccaaag
     4381 aataccctcc caaggagtat gctttgtaca acaacatcag cgatgaagat gccgctcaaa
     4441 aaaccagttt cctgcagctg ctcaagcaaa cacctaccac catgttgcag ctggcggtaa
     4501 cacaattctt ctcctggttt tcattgtttc tgatgtgggt gtataccacc aacggcattg
     4561 cgcaaagtat ctggggaact accgacccaa agagtgctga gttcaacgag gccggcaact
     4621 ggacaggcgt aatatttgcc gcctatagcg tattcgctgc gctttactca ttggtactca
     4681 cccgtatttc cgacaagttt ggaaggaaga atacctacgc tatttcactt attgccggag
     4741 gtatcgggtt actttccatg gtgttcatta aagacaagaa cctgcttttc ctctccatga
     4801 ttggggtggg tatagcctgg gccgctatcc tggccatgcc ttacgccatc ctctcttctg
     4861 ccctgccggc aaaacaaacg ggtgtgtaca tgggcatctt caatgccacc attaccattc
     4921 ctcaaatagt tgcggggtta ctgggtggtg tagccctaac cgccctgggt ggaaatgcca
     4981 tcaatgtaat tgggctggcc ggcgcctcca tggcagtggc cggcatcctg gcaaaaattg
     5041 tcatcaaggc aaccaattaa aagactgaat aattttttaa tcatgaaatc agcaagactt
     5101 aaatacctgt gccagctggc atgggtattg tttttttcat cagcagcatt acaggcacag
     5161 gaaacagaaa tatacccgag ccattggtgg acaggtatga aatggaacca ggtacaattg
     5221 ctggtgcata gcaagaacat caatgcagcc cagcccaaag tagccttcaa ctacccgggt
     5281 gtatctgtaa aaaaagtgac ccgtacagaa agtcccaact acatcgtggt ggatatcaat
     5341 gtaacgcctg ctgccaaacc gggcaccatc aacatgaaca tcgaaagcgg cagcaataag
     5401 tggcagctgt attaccagct caagccccgc aggaaaggcc ttggcagcag ttatgccaac
     5461 ggcgtcaatt ccgctgatct tgtttacctg gtcatgcccg atcgctttgc aaatggcgac
     5521 accagcaacg acaggatcgc tggatacaaa gatgaaattg cagacaggaa aaatccgtca
     5581 gcccaccatg gcggcgatat gcaaggcatc atcaaacaat tgccctacct caaagatttg
     5641 ggtgtaacag cactctggat gtgcccggta accgaaaacg atatgccgtg gaagcaggag
     5701 tctgcaggcg ccatcagcgg ctatcatgga tactggatca ccaaccatta caagatagac
     5761 aaacgctatg gcggcccaga cgtttacaaa caactggtag aagcttctca ccagtcgggc
     5821 atcaaagtca ttcaggatgc ggtgtacaac catgttggcg atgaacactt cctgttcaag
     5881 gacaaaccct ttgccgacat gttcaacaac tggccggcct acacaggcag caatcaccgc
     5941 gaagaatccc ttttcagcgg ctacaccaac cagaacgatc gcaaagtgat gctggaaggc
     6001 tggtttaccc ctcacctgcc tgatatcaat ttgcgcaatc cctacatggc gaacttcctg
     6061 atccaaaaca gcatttggtg tacagaagaa ttcggcatcg acggctggcg ggtagatact
     6121 tacaaatact gcgatgaagc attcatgaac cgggtgaaca gtgccttgat caacgaattt
     6181 cccaccctct ccattttcgg agaagcctgg gccaatactg taaccggaag tgcttatttc
     6241 accaaaaaca acatgaaggt atccttcaaa cacaacctcc cgggcactac cgatttcccc
     6301 atgcaatcgg ccatgctcag tgccatcaac caggattttg gctggaccga aggcgccaac
     6361 agactgatga tgacactagc ccaggatgta ttgtatgaag accccaaacg caattgcatt
     6421 ttcctcgaca accacgatgt agacaggtac ctcaccatga ttggcggcga cctgaacaag
     6481 tacagaatgg gaattggact gttgttgaca atgcgtggca ttccgcagtt gtattacggc
     6541 actgaaattc tgctgaagaa tgatgatgtg cagggcgatg gcaaaaagcg caatgatttt
     6601 cccggcggct tccacggtga tgcgcaaaac aaattcactg cgcaaggaag gaatgcagca
     6661 gaaaatgaag ccttcacctt tgtaaaaaca ctggcacaat tcagaaagca atcaaaagcg
     6721 ttggccatag gaaacaccat cgattacctg ccacagaatg gcgtgtatgc ctacgcaaga
     6781 aaggccggca atgaaacagt gttttgcata ctcaaccaaa ccaaagagat caaaacagtg
     6841 gatgcagatc gctacaagca ggtattcagt ggatacaaaa acgcgactga tattgtcaat
     6901 ggaaatttct ttgaactaaa aggcgaatgg caaatacctc cgcaaagtat tctcgtcctg
     6961 gcattgaaat aatggcaata aaaaaggcag ccttcgctgc cttttttatt tacagaactg
     7021 tgttccagaa attcttctgc cgctcctctt cacttcccca ttcaaaaaca tttacaaccc
     7081 gggccatgag ttcctttcgg ttgatcttgg tagcctttgc cacgggaggc ttcagttcat
     7141 ccggtttagg ctgaaccaat tccactttgg tggcaaacca agtggtataa aagcggggaa
     7201 aggccagtcc aaggatagtg ccaggtaatc cattgtattg ctcgggcccg gcaggtgtca
     7261 caatctgatc ggtgtagaag gcaaccacat acaatgagtc aaacattttg cccacggcct
     7321 tccggcaatc aaaccctgca atggtgcggg tttcgtcagt tatgcgccat tc
//
LOCUS       DATIQF010000903         3008 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_90141, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000903 DATIQF010000000
VERSION     DATIQF010000903.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3008
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90141"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1449)
                     /gene="proS"
                     /locus_tag="VLL95_15640"
     CDS             complement(<1..1449)
                     /gene="proS"
                     /locus_tag="VLL95_15640"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HSR40343.1"
                     /translation="MSKVITPQEQDYSQWYNDLVIKSGLADYSAVRGCMVIKPYGYGL
                     WEKMRDALDKMFKDTGHVNAYFPLFVPKSLFEAEEKNAEGFAKECAVVTHYRLKTDPN
                     NKGKLIVDPEAKLEEELVVRPTSEAIIWNTYKNWIQSYRDLPILVNQWANVVRWEMRT
                     RLFLRTAEFLWQEGHTAHATEQEAWVEARKMLDVYAEFVEEYMAVPVIKGVKTENERF
                     AGAVETLCIEALMQDGKALQAGNSHFLGQNFAKAFDVKFSDQSNKLDYVWATSWGVST
                     RLIGALVMAHSDNSGLILPPRIAPLQVVIVPIYKGDEQLGMITEKVKPIIQQLKDMGI
                     SVKYDNSDHSRPGWKFAEYELQGVPVRMAIGARDLENNVAEIARRDTKEKNSVSLDGI
                     AFYIKTLLDEIQVHLYEKAKRFRDSHITEVNSWDEFMEVLENKGGFISAHWDGTNETE
                     DKIKELSKATIRCIPYDGEVKPGQCVLTGKPRN"
     gene            1641..2462
                     /locus_tag="VLL95_15645"
     CDS             1641..2462
                     /locus_tag="VLL95_15645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40344.1"
                     /translation="MKHFVALGLVASLGMVGCSSAFKTAGTPDDVYYSYGATKPAVEE
                     KYTEEETSGYTSYFESSDDRYLRMKVQDRARWSTIDDVNYWYGYNNPNTMWNMNWNVG
                     VGFWNVNNPWAWNNAFMWNNPWAFNNFYNSWNNPWCWNRPVVVVNKYPSGSSNGSYMA
                     PRPGLSRGAFTNSIFDRGNYNRTGNGKSAVPQSAGYGTRELFRSVFGSGSGSNGSSQG
                     YSRPARLFDNSGSSSGGSIFSSGGGGSSRTSGGSSGSSSSGSSSGGGSRGGRGGN"
     gene            2593..>3008
                     /locus_tag="VLL95_15650"
     CDS             2593..>3008
                     /locus_tag="VLL95_15650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40345.1"
                     /translation="MRYCLFLLLTGLFSHGLFAQSPDDALRYGFPLMGGTARNMAIGG
                     AMGSLGGDITAAHINPAGIGLYKNKEVVLSPGFKFYNNNFDYRTQQTQARENAFGYGT
                     SGFVFGSQHDRSRNASSSAFSISVNQLANYNNRIEY"
BASE COUNT          675 a          762 c          763 g          808 t
ORIGIN      
        1 gtttctgggt ttgccggtca atacgcattg gccgggttta acttctccgt cgtaaggaat
       61 gcaacgaatg gtggctttgc tcagttcttt gattttgtct tcggtttcgt tggtaccatc
      121 ccagtgagcc gatatgaaac cgcccttgtt ttcgagcacc tccatgaatt cgtcccagct
      181 gtttacttcg gtgatgtggc tgtccctgaa gcgtttggct ttttcataca aatgcacctg
      241 gatctcatcc agcaatgttt tgatgtaaaa ggcaatgcca tccaggctta cactgttctt
      301 ctctttggtg tcgcggcggg ctatttcggc cacgttgttc tcaaggtcac gggcgccaat
      361 ggccatgcgt accggcaccc cctgcagttc atactctgca aacttccaac ccgggcggga
      421 atggtcgctg ttgtcatatt ttacagagat gcccatatcc ttcagttgct gaatgatggg
      481 tttcactttt tcagtgatca tgcccagttg ctcgtcgcct ttgtagatgg gtacgatcac
      541 aacctgcagc ggcgcaatgc ggggaggcag gatcaggccg ctgttgtcgc tgtgcgccat
      601 taccagggca ccaatcaaac gagtactgac tccccagctg gtagcccata cataatcgag
      661 cttgttgctc tggtcgctga acttcacgtc gaaggctttg gcaaagttct ggcccaggaa
      721 atgcgaattg cctgcctgca atgctttgcc gtcctgcatg agggcttcaa tgcaaagcgt
      781 ttctaccgcc ccggcgaagc gttcgttctc agtcttcacc cctttgatca cgggtacggc
      841 catgtattcc tccacaaact ccgcatacac gtccagcatt ttgcgggcct ctacccaagc
      901 ttcctgctcg gtggcgtggg ctgtgtgtcc ttcctgccac agaaattcgg cggtacgcaa
      961 aaagaggcgg gtgcgcattt cccagcgtac cacgttggcc cactggttta ccaggatggg
     1021 taggtcgcga tagctctgga tccagttttt ataggtgttc caaatgatgg cttcgctggt
     1081 gggacgaacc accagttctt cttccagttt ggcttcgggg tccacaatca gcttgccctt
     1141 attgttggga tcggttttga ggcggtagtg ggtgaccact gcacattcct tggcaaagcc
     1201 ttccgcgttt ttttcttcgg cttcaaacaa actcttggga acaaacagcg ggaaataggc
     1261 attgacgtga ccggtatcct tgaacatttt gtcgagggca tcccgcatct tttcccacaa
     1321 accatagccg tatggcttga tgaccataca accgcgaacg gcgctgtaat cggccagccc
     1381 cgatttaata acgagatcgt tgtaccactg tgaataatcc tgttcctggg gagtaataac
     1441 cttgctcata gcgtgtattt cgaagtttga tccaggcaga cttccttttc tgcgaatggg
     1501 cggcgaaaat aagcatttgc aggcaggtat gtctttaaca gaatttgaag caaaagcagc
     1561 catatgtcag caaaacatta gcatttggct tgaagagaat ctaaggctga tgtaatacct
     1621 tagccttgaa atcgttgcat atgaaacatt ttgtagccct tggattggta gcctccctcg
     1681 gaatggtggg ttgctcctct gctttcaaaa ctgcaggcac tcccgatgac gtgtattatt
     1741 cttacggtgc gacaaagccg gcagttgagg aaaaatatac agaggaagaa acctcaggat
     1801 acaccagcta tttcgaaagt tcagacgatc gttacctgcg catgaaagtg caggaccgtg
     1861 cccgctggag taccatagac gatgtgaact actggtatgg ctacaacaac cccaacacca
     1921 tgtggaacat gaactggaac gtaggtgtgg gcttttggaa tgtcaacaat ccgtgggcct
     1981 ggaacaatgc ctttatgtgg aacaacccct gggccttcaa taatttctac aactcctgga
     2041 acaacccctg gtgctggaac aggcctgtgg tggttgtaaa caagtatcct tccggaagtt
     2101 ccaatggcag ctacatggct ccacgccccg gtcttagccg cggcgcattc accaacagca
     2161 tcttcgatcg tggcaattac aaccgtaccg gtaatggcaa atcagccgtg cctcaatcgg
     2221 ccggctatgg tacccgcgaa ttgttccgtt ctgtatttgg atcgggttcc ggttctaatg
     2281 gcagcagcca gggttattca cgccctgctc gtttgttcga caatagcggt tcttcttccg
     2341 gcggttccat tttcagcagc ggtggtggtg gcagtagccg cacttcgggt ggcagcagtg
     2401 gaagcagcag cagtggcagt tcatctggcg gcggtagccg tggtggtcgc ggtggcaatt
     2461 aatgctgttt cttaccaggc tccagtttgc ccattgcgtc aacgattttc tacttatccg
     2521 tgagaagtga atgtttcata atatccggaa gtctcaggct ttttggaaat ggaaaaagta
     2581 caatccaatc aaatgcgtta ttgcttattt ctgctattga ccggcctttt cagccatgga
     2641 ttatttgccc agtctcccga tgatgcattg cggtatggat tcccgttgat ggggggtact
     2701 gccaggaaca tggccattgg tggcgctatg ggatcattag gcggcgacat cacggcagca
     2761 cacatcaacc cggctggtat aggtttgtac aaaaacaaag aggttgtttt atcgccgggc
     2821 tttaaattct acaacaacaa ttttgactac cgcacccagc aaacacaagc cagggaaaat
     2881 gcatttggct atggtaccag tggtttcgtt tttggctcgc aacacgaccg ttcgaggaat
     2941 gccagcagtt cagcgttttc catcagcgtc aaccagttgg ccaactacaa caatcgcatc
     3001 gagtacaa
//
LOCUS       DATIQF010000904         7223 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_14324, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000904 DATIQF010000000
VERSION     DATIQF010000904.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 7223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7223
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14324"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1180)
                     /locus_tag="VLL95_15655"
     CDS             complement(<1..1180)
                     /locus_tag="VLL95_15655"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HSR40346.1"
                     /translation="MRPGTGGGAGMGAGQTGRMYGKIIDSASGKPLDAASVQLVSSKF
                     DMATRQRKDTILTGMLTPANGDFSLENIPVMGDYRIRISAIGFKPLERKVSFLSPETQ
                     KKLMEAFAAASKQGGQPNMMEILKKAFGGDMSQLSSLGDKDLGNFKLQYDAKMLDNVT
                     VTGNKPMMQMGIDRRIFNVDKNMAANGATALEIMRQVPTLNVDIDGNVTIRGTTPTLF
                     IDGRPSTLTLEQIPADDIQSVELITNPSAKYDAAGGSASILNVVMKKTKRVGYNGSLR
                     AGIDSRPRPNFGGDFSLRQNKINFFASGSYNARKSLSWTDVNTAFKASGNNPATVIAQ
                     DIDNVSDGSFAFGRTGIDYFIDNRNTLTASFNFVRGSFNTFETNTLRYDTFYNPVKSE
                     K"
     gene            complement(1401..2006)
                     /locus_tag="VLL95_15660"
     CDS             complement(1401..2006)
                     /locus_tag="VLL95_15660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40347.1"
                     /translation="MNPWLLLLPLIAAFTGWLVIRVFLWALFRPQKAMSLAGIRLQGI
                     LPRTQSQLSSQLGKWVSTHFISFDQLAGTIGSADNLEKLMPMVETQIDHFLREKLAQE
                     MPMISMFIGDKTIGKVKGVFMDELRSLFPRLMQEYAATLSEKIDIEKLVAEKVANINT
                     SDLEQALYQQYGRYIGRLYAMAAVIGFAMGLLQLAIAVFTA"
     gene            complement(2059..2134)
                     /locus_tag="VLL95_15665"
     tRNA            complement(2059..2134)
                     /locus_tag="VLL95_15665"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2097..2099),aa:His,seq:gtg)
     gene            2359..4479
                     /locus_tag="VLL95_15670"
     CDS             2359..4479
                     /locus_tag="VLL95_15670"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HSR40348.1"
                     /translation="MMNKKVWPFLVPGILVLILVVAKSWGTGSTEPNNKYERILTTVA
                     EFLEQGHYSPKKLDDNFSREVFKAYLNDVDPDRTILLQSDVDKLKEFETSIDNELRTG
                     KMGLVPALDAIFNQRLKEASSIYKTILSKPFDFTVKETVTLDGDDMPFPANENERKEN
                     WRKRLKFMVLERYADALETREKNKGQKDFVAKADSTLEREARERVLKIWDRTFDRLTN
                     KFNLDEKFNLYINTIAETMDPHTQFFPPIEKRAFDEAMSGEFFGIGAQLSEQDGNIKI
                     VSLVTGSPAWKSGEIQVGDIILKVAQGAAEPVDITGFETTDAVKLIRGQKGTEVRLTI
                     KKTDGSIKVVSMIRDKIVQEETFARSAIVKGEHKMGYIFLPEFYANFDDPNGARCARD
                     VANEIRKLKAENVEGIIMDLRYNGGGSLQDVIQMVGLFIEGGPVVQVKDRDGEASVYH
                     DKDKGVLYSGPLVVMINEFSASASEIFAAAIQDYKRGLIVGTPSFGKGTVQRNIGLDR
                     NTGFFMPASELGTLKLTLQKFYRINGGSTQLNGVEPDIVLPDNFEFTKNREKDQRNPL
                     AWDEIPKATYNVWPAGVDIAQVQTAYSEKVQSDNSFKTIRNNAEYLSKANDKTVSLFL
                     PDYQATQAKIKAAVKQNEELQTLKEPMNIAYMAEDQDRINKMDKDKSERFMNWLKGVK
                     TDRYLFETSRILEEMIKRGNTAVK"
     gene            4623..5090
                     /locus_tag="VLL95_15675"
     CDS             4623..5090
                     /locus_tag="VLL95_15675"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012360.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HSR40349.1"
                     /translation="MSNQPIILSSGIVDVVCGKNVRIVQPVNLYGCTLGDDCFIGPFC
                     EIQKEVSIGTGTKVQSHSFICSLVSIGERCFIGHGVMFVNDKFSDGKAAAGDQSKWKP
                     TKIGNEVHIGSNATILPVSICDGAVIGAGAVVTKDILQKGVYAGNPARLIRLL"
     gene            complement(5110..7020)
                     /locus_tag="VLL95_15680"
     CDS             complement(5110..7020)
                     /locus_tag="VLL95_15680"
                     /inference="COORDINATES: protein motif:HMM:NF017390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M56 family metallopeptidase"
                     /protein_id="HSR40350.1"
                     /translation="MLQLVQSSFLQALGLAIANSLWQMGLIWLLYQIINAIAKPTAGG
                     RYALASAAALSGTLWFLLSCWYYWQTPVPFHSTVTFLSSQQQDGWLWRSISAIRLMIP
                     YLGAAYLLVIAVLAVRFYNSFAQVHKLRHAGLSKAPVDWRLFVKKYNALLHIEKPVTL
                     LLSTKVSSPMTLGFWKPIILLPIASINQLSAEQMEAVLLHELTHIRRHDYLVNMLLQV
                     AEMLLFFNPFMRNLLRHAYNERENSCDDWVLQFNYNPREYATALLTLEQQAQKHALAL
                     CATGHKHQQFYLLQRIRRMVAPEKNAFNYRSQMGMLALLLAFGVLAHTIVDTRLAKTG
                     SQSLATSKTLSPKVSSVPTEPFDLRATMTLFADIAQSIRTGNQQMQQAIASAKAMPPA
                     GQHQETGMAIHDGLENASAFPAIGHPVIITELQAAENPVPAVVSAGNQTSILYAPKGK
                     NEVAKSEVMIQGLDEASLLMLTTLAEQLAALEIEKHSLETAVGKAEIELRKVKVASVN
                     ARQYEKDGAWYTQQIDEYSTAAAMKKEAIKEWQQQMETARQQLQAMNDQSAAMLEKQL
                     NSQQEAISKSLQDEIMLREKAIRELSKEIERISKPLGGQNNTEISGSAKLQPLNPAVK
                     KPTRKPRVIIQL"
     gene            complement(7042..>7223)
                     /locus_tag="VLL95_15685"
     CDS             complement(7042..>7223)
                     /locus_tag="VLL95_15685"
                     /inference="COORDINATES: protein motif:HMM:NF015898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HSR40351.1"
                     /translation="THVYEANISKEKTQQHLVGKMMNTLFDGSAGQLVMRALGASKPS
                     KQEIEEIQKLLDSLK"
BASE COUNT         1798 a         1693 c         1895 g         1837 t
ORIGIN      
        1 ctttttccga tttcaccggg ttgtagaaag tatcgtaacg cagggtgttg gtttcaaagg
       61 tgttgaaact gccacgcaca aagttgaaag aagcggtcag tgtattgcgg ttgtcgataa
      121 aatagtcaat gcctgtgcgg ccaaaggcaa atgaaccatc acttacattg tcgatgtcct
      181 gcgcaattac agtggcagga ttgttgccgc tggctttgaa cgcagtgttg acgtcggtcc
      241 agctgagcga tttacgggcg ttatagctgc ccgatgcaaa gaagttaatc ttgttttgac
      301 gcaggctgaa atcgccgccg aagttgggac gggggcggct gtcgatgccg gcacgcaacg
      361 aaccgttgta acccaccctt ttcgttttct tcattaccac gttcaggatg gaagcggaac
      421 cacctgccgc gtcatatttg gctgaggggt tggtaatgag ttccacgctt tgaatgtcat
      481 cggcgggtat ttgctcgagg gtaagggtag atggacgccc gtcaatgaac aatgtgggcg
      541 ttgtacccct gatggttaca ttgccgtcaa tatccacgtt gagcgtaggt acctgccgca
      601 tgatctcgag ggcagtggcg ccattggcag ccatattctt atctacattg aagatccggc
      661 ggtcgatgcc catttgcatc atgggcttgt tgccagtcac ggtcacgttg tccagcattt
      721 ttgcgtcata ctgcaatttg aaattgccca gatccttgtc gcccaatgac gacaattggc
      781 tcatatcgcc gccaaatgct ttcttgagga tctccatcat attgggctgt cctccctgct
      841 tgctggctgc cgcaaaggct tccattagtt ttttctgggt ttcggggctc aggaaagaga
      901 ccttgcgctc caggggttta aaaccaatgg cactgatacg gatgcgataa tcacccatca
      961 ccggaatgtt ctccagcgaa aaatcaccat tggcaggagt gagcatgcct gtaaggatgg
     1021 tgtctttgcg ctggcgggtg gccatatcga atttgctgct taccagttga acggaggcgg
     1081 catccagcgg tttgcccgat gcactgtcaa ttattttgcc atacatgcgg ccggtttgac
     1141 ctgcgcccat tccggcgcca ccgcctgtac cagggcgcat tcccccgggt tgagcaaaga
     1201 gtaaagtact gagaaagagt gtcaggaaga gagaaacaaa ctgcttcata ttgattttca
     1261 atggattgat tcaggttttt ggattgtcat gaaattgtca cgacactgaa gaatgttatt
     1321 acaatattca aacaggattg tttgacggct gcttcctgca aaacccttgc ggcaggtgtt
     1381 aagaattgga taaatggctg tcaggcggtg aaaacggcta tggccagttg gaggagtccc
     1441 atggcaaaac caataacggc ggccatggca taaagccgcc caatgtatcg gccatattgc
     1501 tggtaaagtg cctgttccag gtcgctggta ttgatgttgg ccactttttc tgctaccagt
     1561 ttttcgatgt caatcttttc gctcagcgtg gcggcatatt cctgcatcag cctggggaac
     1621 aggcttctga gttcgtccat gaacacgcct ttcaccttgc caatggtttt gtcgccaatg
     1681 aacatgctga tcatgggcat ttcctgtgcc agtttttcac gcaggaagtg gtcgatttgg
     1741 gtttcgacca tgggcatcag tttttccagg ttgtcggcac tgccaatggt gccggccaac
     1801 tggtcgaagg aaataaaatg agtgctcacc catttgccca attggctgga caattgcgac
     1861 tgggtacggg gtaagatgcc ctgcaaccgg atgcctgcca ggctcatggc cttctggggc
     1921 cggaagagcg cccacaggaa aacacgtatc accagccaac cggtgaaggc cgcgatcagg
     1981 ggcaataaga gcaaccaagg attcatgaca gaagtaggtt tataaaaaac tcccgccgcg
     2041 gggcgggagc aattaagtgg gagaatgagg ggattcgaac ccccggcctt cagagccaca
     2101 atctgacgct ctaaccaact gagctacaat ctccgttttt gggagcgcaa aaatagggaa
     2161 atctgactgt tggcgccaaa gcctttcttc aaaatttcat gaagcgcttt tcttaacgtt
     2221 ttctctgttt gcccgcagcg aaccggtgat ggatcaatgg ttccgttcct attcgggtat
     2281 tgttaattta aacaagtggt tccctgtgat tgtcatttta ccgtaggttt gaaactcatg
     2341 tcgaaaatca gccgatttat gatgaataag aaagtgtggc ccttcttagt gccgggtatt
     2401 ttagtgctta tactggtggt agccaaaagc tggggtaccg gatctacaga gcctaacaac
     2461 aagtatgaac gtatactcac cacggttgcc gaatttttag aacaaggcca ttacagcccc
     2521 aaaaagctgg acgacaattt ttccagggag gttttcaagg cctacctcaa cgatgtagac
     2581 cccgaccgta ccattttgct tcaatccgat gtcgacaaac tcaaagagtt tgagacttca
     2641 atagacaatg aactgcgcac cggaaaaatg ggcctggtac ctgcattgga tgccattttc
     2701 aatcaaagac ttaaggaagc ttcctccatc tacaagacca ttttgtcaaa gccatttgat
     2761 ttcacggtaa aagagacggt gacactggat ggcgatgaca tgccgtttcc ggccaatgaa
     2821 aacgaaagaa aagagaactg gcgcaagcgc ctgaagttta tggtgctgga gcgctatgcc
     2881 gatgcactgg aaacccgcga aaaaaacaaa ggtcaaaagg attttgtagc aaaggccgac
     2941 agtaccctgg agcgtgaagc ccgggaaagg gtgctcaaga tctgggaccg tactttcgac
     3001 cgcctgacca ataagttcaa tctcgacgag aaattcaatt tgtatatcaa caccatcgcc
     3061 gaaacgatgg atccgcatac gcagtttttc ccccccatcg aaaaacgggc ttttgacgaa
     3121 gccatgagcg gtgaattctt tggcattggg gctcagttga gtgagcagga tggcaacatc
     3181 aaaatagtaa gcctggtaac tggcagcccc gcctggaaga gcggcgaaat acaagtgggc
     3241 gacattattt tgaaagtggc ccagggcgct gcagaaccgg tggatattac cggtttcgaa
     3301 accaccgatg cggtaaaact catccgcgga caaaagggta cagaagtgcg cctgaccatt
     3361 aagaagaccg atggttccat caaagtggtg tccatgatcc gcgacaagat cgtgcaggaa
     3421 gaaacttttg cccgcagcgc cattgtaaag ggtgagcaca aaatgggcta cattttcctg
     3481 cccgaattct atgccaactt tgatgatcca aacggagccc gctgtgcccg tgatgtggcc
     3541 aatgaaatca gaaagctgaa agccgaaaac gtagaaggca tcatcatgga ccttcgttac
     3601 aacggcggcg gctcgctgca ggatgtgatt cagatggtag ggcttttcat tgaaggcggc
     3661 cccgtggtac aggtgaaaga ccgtgacggt gaagccagcg tatatcacga caaagacaaa
     3721 ggggtacttt acagcggccc gctggtagtg atgatcaatg aattcagcgc atccgcctcc
     3781 gaaatttttg ccgctgctat ccaggattac aaacgtggcc tgatcgtggg aacgcccagt
     3841 tttggcaaag gcactgtaca gcgcaacatt ggactcgacc gcaataccgg cttcttcatg
     3901 cctgcatcag agttgggtac tttgaaactc acgcttcaga agttctatcg catcaacggc
     3961 ggctctacac aattgaatgg ggtagagcct gatattgtac tgcccgacaa tttcgagttt
     4021 acaaagaacc gtgagaaaga ccagcgcaat cccttggcct gggacgaaat acccaaggca
     4081 acttacaatg tatggcccgc cggtgtggat atagcgcagg tgcaaaccgc ttacagtgaa
     4141 aaagtgcaga gtgacaattc gtttaaaacc attcgcaaca atgctgaata cctgagcaag
     4201 gcaaacgaca aaacggtaag tttgttcctt cctgattacc aggctaccca ggctaagatc
     4261 aaggcggcgg taaagcaaaa tgaagaactt cagaccctga aagaaccgat gaatattgct
     4321 tacatggccg aagaccagga tcgcatcaac aaaatggaca aggataaaag tgagagattc
     4381 atgaactggc tgaaaggagt gaaaacagac cgttacttgt ttgaaacctc acgcattctg
     4441 gaagaaatga taaagcgggg caacaccgct gtaaaatagt tgtcgttctt aatccatcag
     4501 aagcagaatg acagcagaaa accggcgaaa gccggttttc gttttttcaa taacattgct
     4561 ttgtatccac cacttcaatt accttcgaaa caagggtgta aattcctcca ttgaacaaca
     4621 gtttgtctaa tcagccaatc atattatcca gcggaatcgt cgacgttgtc tgcggcaaaa
     4681 atgtacgcat tgtacagccg gtgaacctgt acggatgtac gctgggcgac gattgtttta
     4741 taggtccatt ctgcgaaatc cagaaggagg ttagcatcgg taccggtacc aaagtgcaaa
     4801 gtcacagttt catttgctcc cttgtgagta ttggtgaaag gtgttttatc ggtcatgggg
     4861 ttatgttcgt gaacgacaaa ttttctgatg gcaaagcggc cgctggtgac caatcgaaat
     4921 ggaagccgac aaaaattggc aatgaagtac acattggcag caatgctacc attttgcccg
     4981 tcagcatatg cgatggtgcc gttattggcg ccggggctgt ggtaaccaaa gacattctgc
     5041 agaaaggagt ttatgcaggc aatcccgccc gactcattcg gttgttatag catacaaccc
     5101 tgaagtagtt tacaactgaa taatcactct tggcttgcgg gttggctttt tcactgccgg
     5161 attcaaaggc tgcaatttgg cagagccaga tatttcggtg ttgttttgac cgccgagtgg
     5221 cttgctgatg cgttcaattt ctttgctcag ttcgcgaatg gctttttccc gcagcatgat
     5281 ctcgtcctgc aatgacttgg agatggcttc ctgttggctg ttcagttgtt tttccagcat
     5341 ggctgcggat tgatcattca ttgcctgtaa ctgctgcctg gctgtttcca tttgttgctg
     5401 ccattctttg atggcttctt ttttcatagc ggcagctgtg ctgtattcat ctatttgctg
     5461 tgtgtaccag gcgccatctt tttcatattg cctggcattg acagatgcca ctttcacttt
     5521 gcgcaattcg atttcggcct tgcctaccgc tgtttcaagc gaatgctttt ctatttccaa
     5581 tgcggccagt tgttctgcca gcgtggtcaa catcagcagg gaagcctcgt caagcccttg
     5641 tatcatcact tcggactttg ccacttcatt tttgcccttg ggcgcataca aaatgctggt
     5701 ttggtttccg gcacttacca ctgccggcac tggattctcg gctgcctgta attcggtaat
     5761 gatcacagga tggccaatgg cggggaaggc actggcattt tccaaaccat catggatagc
     5821 catgccagtt tcctggtgct gcccggcagg aggcattgct tttgcactgg ctatcgcttg
     5881 ctgcatttgt tggttgccgg tcctgatgct ttgtgctata tcagcaaaca aagtcatggt
     5941 agcccgcagg tcaaaaggtt ctgtggggac ggaactgact ttaggggaca aggtctttga
     6001 agttgccaat gactgggagc ctgtttttgc caggcgggta tccacaatgg tatgtgccag
     6061 caccccaaat gccagcaaca gggcgagcat gcccatttgt gaacggtaat tgaaggcatt
     6121 cttttcgggt gctaccattc gtcggatgcg ttgcagcaag taaaactgct ggtgcttgtg
     6181 cccggtggcg cacaaagcga gtgcatgttt ttgtgcctgc tgctcaaggg tcagcaatgc
     6241 ggtggcgtac tcccggggat tgtagttgaa ctgcaacacc caatcatcgc agctgttttc
     6301 cctttcgttg taagcatggc gcaggaggtt gcgcataaat gggttgaaga aaagcagcat
     6361 ttcggctacc tgcagcagca tgttgaccag gtagtcgtgg cgccggatat gagtgagttc
     6421 gtgcagcagc acggcttcca tttgctcagc ggaaagttgg ttgatgctgg caatgggcag
     6481 caggatgatc ggcttccaga atcccagtgt catggggctt gaaactttgg tgctcagcag
     6541 caatgtcact ggtttttcaa tgtgcaacaa ggcgttgtat ttcttcacaa acaggcgcca
     6601 gtccaccggt gcttttgaca agcctgcatg acgcagctta tgcacctgcg caaaactgtt
     6661 gtaaaagcgt acagccaaaa cggctatcac caaaaggtag gccgcgccga gataaggtat
     6721 catcagccgg atggcggaga tggagcgcca aagccagcca tcctgctgct gtgatgacag
     6781 aaacgttacg gtggaatgga agggaacggg tgtttgccag taataccagc aggaaagcag
     6841 gaaccatagg gtgccggaga gtgccgccgc actggcgagg gcgtagcgac cgccggccgt
     6901 gggtttggcg atggcattaa taatttggta caaaagccag atcagtccca tttgccaaag
     6961 actgttggca atggccagtc cgagtgcctg caaaaaagat gactgtacaa gttgcaacat
     7021 gtgcagcagt tttggggtgt gttacttcag gctatcgagc agtttttgta tttcctctat
     7081 ttcctgtttc gaaggttttg atgcgccaag agcccgcatc accagttggc ctgccgagcc
     7141 atcaaacaag gtgttcatca ttttacctac caagtgttgc tgcgtctttt ccttgcttat
     7201 gttggcttcg tacacgtgtg tct
//
LOCUS       DATIQF010000905         8798 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_287716,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000905 DATIQF010000000
VERSION     DATIQF010000905.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8798
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287716"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1236
                     /locus_tag="VLL95_15690"
     CDS             <1..1236
                     /locus_tag="VLL95_15690"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HSR40352.1"
                     /translation="HQMNRLLQGDVGSVKTMVALLCMLLAADNGYQSCLMAPTEILAQ
                     QHYAGITSLLKDMPVKVALLTGSVKIAERRRILAAALEGDIDILIGTHALIEDTVQFR
                     NLGFVVIDEQHRFGVEQRSKLWQKNDVPPHVLVMTATPIPRTLSMSLFGDLDCSIMDE
                     LPPGRQPITTVHRYESSRMNVLEFVQQEIEKGRQAYIIFPLIEESSKVDYENLMRGYE
                     NVKSYFPEPKYWISMVHGRMTAEQKDTNMQRFVRGDTQIMVSTTVIEVGVNVPNASVM
                     VIESAEKFGLSQLHQLRGRVGRGSEKSFCILLTGPKLTSDARERLKIMCETNDGFRIA
                     EKDLELRGPGDVEGTRQSGMLNFKLASIVNDQRLMETAQRMAENLLEQDIELTAPQNQ
                     ALKQYLLSKKGKTYWSQIS"
     gene            1286..4939
                     /locus_tag="VLL95_15695"
     CDS             1286..4939
                     /locus_tag="VLL95_15695"
                     /inference="COORDINATES: protein motif:HMM:TIGR04131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HSR40353.1"
                     /translation="MKKLFNLICLLAIYPAIFAQTFEYIQNKGQWDNEVLYKGELSNG
                     AFYLKQNGYRVLQHHPDDLDRLKGTITGHPHYYEKGNLRNPSVSAATVINNGTAGGGT
                     AAGTDELVLRSHAYDMVFVGANPKAPLAGTKQMPGYFNYIIGNDPKKWQGEVHAFGEV
                     WMRQLYPGVDVRYYSEDGFVKFDLVAQPNAALEKIAMQYVGVDKLSLRNGELIIKTSV
                     SEVREQAPYSYQLINGVRKQIDCRYELIGNVVRFKMTGYDPSQPIIIDPTLIFASFTG
                     SVADNWGYSATYDGSGNLYAAGIAFANGYPTTPGAFQTTFRGGCQTGEGKAFDMAIMK
                     FNPNGTQRVYATYIGGSTCNEFPHSLVVDGANNLVIAGRTTSSDYPTTSPLIGSGGNW
                     DIVVTKLNATGTGLVGSIRMGGGSDDGVNIRNKYPIQGATELQQNYGDDSRSEVILDR
                     AGNIIVASSTQSINFPVTAGAIQNSLNGTQDAVVIKFNPNLTALQFSTFLGGSGYDAG
                     YVLTLSPAGNIYVGGGTTSNNFPGNKAGTVGQNYAGGPADGFVAEIDPNGTSIIKSSY
                     IGTNGLDQVYGVQFDRNGFLYVLATSTGNFPVINAPFSQGGGKQFIGKLQNDLSAYVY
                     STVFGTNANRPNISPTAFLVDRCENVYVSGWGGNVTNEVPPRFPNSGTTGLTVTNNAI
                     MRTTDGTDFYFFVLEKDAASQLYGSFYGQQAVPGQPTVGDHVDGGTSRFDAGGVIYQA
                     VCANCSGGQFPITPGVVGPTNPSGQCNQAVIKIAMDLSGVRGGVKSSIRNVDGDTSDC
                     VPATVNFRDTVAIAQSYEWDFGDGTRLVTTTPDVTHVFNTVGTFRVMLVSVDNTKCYT
                     RDTSYVNIRVRTDRAILAANNTKLPPCQSNLYRFDNLSTPPAGKPFTNTSFFWIFGDG
                     TPPQVAGTAPVTHQFAAPGTYNVQLVLVDTSYCNAPDTLTQTLRVSPLVDASFQTPLS
                     GCAPHLAVFNNTSSGGQQFFWDFGDGTTSTLASPTRLYTIPGVYTVKLVAIDSSTCNI
                     IDSTTQTITVSGSPVADFSFSPNPPEENIITTFTNLSEIVPEYRWFFGDGDSLITFRR
                     DTIVRHQFRQTGTYNSCLVAINQFGCRDTICRPVSIIINPLLDVVSAFTPNGDGINDR
                     AVVIGYGISKLTFRIYNRWGQLMFESADERVGWDGKFNGKLQPMDAYGYTLDAEMVSG
                     EKIRKSGSITLIR"
     gene            4959..6005
                     /locus_tag="VLL95_15700"
     CDS             4959..6005
                     /locus_tag="VLL95_15700"
                     /inference="COORDINATES: protein motif:HMM:TIGR03519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PorP/SprF family type IX secretion system
                     membrane protein"
                     /protein_id="HSR40354.1"
                     /translation="MTGSTTMGRKWYRICTGVMMVVGMLCIRPLIAQDLHFSQFMHNP
                     LLTNPANTGFNPDFDYRVGASYRNQWWSLPVPYKTTSIWGDVQLMRDKFYNGWMGLGG
                     VILRDVAGSGGLRSTKAYASVAWHQELGYNSLLSGGFNIGFATKSIDIASFRFENQWN
                     GKFFDAGLPNGEPFAYSQIGYLDLQAGLNYAYFPSDNLYLNAGVSLMHLNRPRESFFS
                     EDYSDNRVPMRYTGFANASIKLNDQWILNPNIYYSYQTGSSEFMGGLMAQYNLGQYGE
                     QQLIGGAYYRPGDAAIGVVGLQWKDIRLTFSYDATTSNMKNFNGGNGAMEFSLIKLGT
                     FSGRSPRQTRCPAF"
     gene            complement(6018..6824)
                     /locus_tag="VLL95_15705"
     CDS             complement(6018..6824)
                     /locus_tag="VLL95_15705"
                     /inference="COORDINATES: protein motif:HMM:NF041895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choice-of-anchor V domain-containing protein"
                     /protein_id="HSR40355.1"
                     /translation="MPHSTPFRATRKTVITVFLLLAFCSSFSNYFFRSAAPPGGYSGA
                     GLETCTSCHQGNELNASGGDIIVTGLPANGYIPGTTYTFSIAIAHANADRTRWGFEIA
                     AMNALAMPIGTFSSGDPKAAVIPLTGELGHKEAPFTSPQGFYTFTDLKWTAPANPGNN
                     EKLITFYVAANAANGDLTNAGDFIYNKSIQIPLKVVYTFTGNGLWSEANNWSNNAIPP
                     SVISTGAEIVIDHQTNGECVLNVAQQISSGSQLTVKPGKRLRLNGNLIIQ"
     gene            7138..7605
                     /gene="mraZ"
                     /locus_tag="VLL95_15710"
     CDS             7138..7605
                     /gene="mraZ"
                     /locus_tag="VLL95_15710"
                     /inference="COORDINATES: protein motif:HMM:TIGR00242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0051302 - regulation of cell division
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HSR40356.1"
                     /translation="MAGFLGEYEATVDAKGRFLLPANLKKQMPEGTSVLVINRGMDDC
                     LWMYLLDDWKKVEDRLREVNPYDSRENRMVRKALIAGAVYVEFDSAGRINLPKVLAEY
                     AGLDKDIVLAGDIDKIEIWDKSRYEKLFESLTPEKLSAMASGILGSGTKADHL"
     gene            7623..8594
                     /gene="rsmH"
                     /locus_tag="VLL95_15715"
     CDS             7623..8594
                     /gene="rsmH"
                     /locus_tag="VLL95_15715"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: protein motif:HMM:TIGR00006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HSR40357.1"
                     /translation="MAKQKKVNRPSDSESAGSTSASAYHVPVMLHETVDALQVKPDGV
                     YVDCTFGGGGHIREILRRLGPAGKLVGFDQDADAASNLPVDDRLVFIPENFRHVYRFL
                     RLNGLLPVDGIMADLGVSSHQFDEADRGFSYRFDAQLDMRMDQRQPVTAASILNSYDA
                     AALQNILSQYGEVTNARTLAAALVARRQQASYSTISDLLQVLEPLAKGNPNRYYAQVF
                     QALRIEVNDELGVLKEWLEQLPKVLKPGGRVAVITFHSLEDRLVKTYFRDGGFEKTED
                     PIYGAKSQSPFVLITKKPIEASAEEVKRNDRSRSARLRVAELREVKE"
BASE COUNT         2225 a         2191 c         2343 g         2039 t
ORIGIN      
        1 caccagatga accgcctgct gcagggcgat gtgggcagtg tcaaaaccat ggtagcgttg
       61 ctttgcatgt tgctggcagc cgacaatggc taccagagct gcctgatggc acccaccgaa
      121 atactggcac agcagcacta tgcgggcatt acatcgctcc tgaaagacat gccggtgaaa
      181 gtggccttgc tcacgggcag tgtgaagatt gcagaacgca gacgaattct ggcggcagct
      241 ctggagggtg acatcgacat cctcattggc acccatgccc tcattgaaga cacagtgcag
      301 ttcaggaacc tcggttttgt ggtgatcgac gagcaacacc gttttggtgt ggagcaacgg
      361 agcaaactgt ggcagaaaaa cgatgtcccg ccgcatgtgc tggtgatgac ggccacgccc
      421 ataccgcgaa ccctgagcat gagcctgttt ggcgatctcg attgcagcat tatggacgag
      481 ttgccaccgg gccgtcagcc catcaccacc gtgcaccggt atgaaagcag ccgcatgaat
      541 gtgctggaat ttgtgcagca ggaaatagaa aagggcagac aggcgtacat catattcccg
      601 ttgatagaag aaagcagcaa agtggactat gagaacctga tgaggggtta tgaaaacgtg
      661 aaatcctatt tccccgaacc caaatactgg atcagcatgg tgcatggccg tatgacggca
      721 gagcagaaag acaccaacat gcagcgcttt gtgcggggcg atacgcaaat catggtaagt
      781 accaccgtga tcgaggtggg cgtgaatgtt ccaaacgctt cggtaatggt gattgaaagt
      841 gctgaaaagt ttggcctgag ccagctgcac cagctgcggg gcagggtagg acggggcagt
      901 gaaaaaagct tttgcattct gttaaccggg cctaagctaa cttccgatgc acgggagcgg
      961 ttgaaaataa tgtgcgaaac caacgatggc tttcgcattg ccgaaaagga cctggaattg
     1021 cggggacccg gtgatgtgga aggaacccgc caaagtggga tgctcaattt taaacttgcc
     1081 tccattgtaa acgatcaaag actcatggag acggcgcaaa ggatggcaga gaatttgctg
     1141 gagcaggata ttgaactgac tgctccacaa aaccaggctt taaagcaata ccttttgtcg
     1201 aaaaagggta aaacttactg gtcgcaaatt tcatgatacc aaaaagcatc cggctagcgt
     1261 tagtattcgt aacttgaact ataccttgaa gaagctattt aaccttatct gcctgctggc
     1321 aatttaccct gccatttttg cccaaacctt tgaatacatt cagaacaagg ggcaatggga
     1381 caatgaagta ctgtacaaag gagaactctc gaacggcgct ttttacctga agcaaaacgg
     1441 ctaccgggtg ctgcagcacc accccgatga ccttgaccgg ctgaagggaa ccattacagg
     1501 gcacccgcat tattacgaaa aaggcaactt gcgcaatcca agcgtttcag cggccacggt
     1561 catcaataat ggcactgcgg gtggaggcac tgctgcaggc actgatgaac tggtgctgcg
     1621 gtcgcatgct tacgatatgg tatttgtggg cgccaatccc aaagcgccgc tggcaggcac
     1681 caagcaaatg cccggttatt tcaattacat cattggcaat gaccccaaaa aatggcaggg
     1741 cgaagtgcac gcatttggtg aagtatggat gcggcaattg tacccgggcg tagatgtgcg
     1801 ctactacagc gaagacgggt tcgtcaaatt tgaccttgtt gcgcagccca atgcggcact
     1861 tgaaaaaatt gccatgcaat atgtgggggt agacaagcta tcgctgcgca atggcgaatt
     1921 gatcataaaa acttcggtca gtgaagtaag ggaacaagcg ccttacagct accagttgat
     1981 aaacggagtg cgcaagcaaa ttgactgccg ctatgaactg atcggaaatg tggtgcggtt
     2041 caaaatgacg gggtatgatc cttcccaacc aatcatcatc gaccccactt tgatctttgc
     2101 ttcctttacc ggcagcgtgg ccgacaactg gggttattct gccacctatg atggttccgg
     2161 caatttgtat gccgctggta tcgcctttgc caatgggtat cctaccacgc ccggcgcttt
     2221 ccaaaccacc ttcaggggag gttgccaaac gggagaagga aaggcatttg atatggccat
     2281 tatgaaattt aatcccaatg ggacgcaaag ggtgtatgct acttatatcg gtggctctac
     2341 ctgtaatgaa tttccgcaca gcctggtggt agatggcgcc aacaacctgg tgattgccgg
     2401 gcgcactaca tcgtcagatt atcccaccac ctccccgctg attggctcgg gtggtaattg
     2461 ggatatagtg gttaccaaac tgaatgcaac cggcacagga ctggtgggtt ccatacgaat
     2521 ggggggaggt tcagacgatg gagtgaatat tcgcaacaaa tatcccatcc agggagccac
     2581 ggaattgcag cagaattatg gagatgattc gagaagcgaa gtaatactgg acagggctgg
     2641 caatatcatt gtggcgtcca gtacccaaag catcaacttt cccgttaccg ctggtgccat
     2701 acagaattcg ctgaatggta cacaggatgc tgtcgttatc aaattcaatc ccaatctcac
     2761 cgccctgcag ttttctacct tcctgggagg ttcaggctac gatgccggct atgtgcttac
     2821 cctaagcccg gctggcaaca tttatgtggg cggcggcacc acttccaaca actttcccgg
     2881 aaacaaagcg ggtacagtgg gtcaaaatta tgcaggtggg ccggccgatg gttttgtggc
     2941 cgaaattgat cccaacggta catccatcat taaatcttct tacataggta ccaacgggct
     3001 cgaccaggta tatggtgtgc aattcgatcg caatggtttc ctctatgtgc tggctacctc
     3061 tactggaaat ttcccggtga tcaacgcccc gttttcacaa ggcggtggca aacagtttat
     3121 cggcaaattg cagaacgacc tgagcgccta tgtgtacagt actgtatttg gcaccaatgc
     3181 caaccgaccc aacatcagcc ccactgcatt cctggtggac cgctgcgaga atgtgtatgt
     3241 aagcggatgg gggggaaatg tgaccaatga agtgcccccg cgttttccca actcgggaac
     3301 cacgggtctt actgttacca ataacgccat catgcgcact accgatggta ccgattttta
     3361 cttttttgtg ttggaaaagg atgctgccag ccagttgtat ggctcgtttt acggccagca
     3421 ggcggttccc ggccagccta ctgtaggcga ccacgtggat ggtggcacca gccgttttga
     3481 tgccggtggt gtgatatacc aggcagtatg tgccaactgc agtggcgggc aatttcctat
     3541 tacccctggc gtggttggac ctaccaatcc ttccggccag tgcaaccagg cggttatcaa
     3601 aatcgccatg gatctgtccg gtgtgcgggg cggcgtaaaa tcatccataa gaaatgtaga
     3661 tggcgataca tctgattgtg ttccagccac cgtgaacttc agggatactg tggccattgc
     3721 ccaatcctat gaatgggatt ttggcgatgg cacccgactg gtgacaacca ctccggatgt
     3781 cacccatgtg ttcaatacag taggcacttt cagggtaatg ctggtttcgg tggacaatac
     3841 caagtgttat acccgcgaca cgtcttatgt aaacatcagg gtgcgcaccg acagagccat
     3901 cctggcagcc aacaatacca aactgccgcc ttgccaaagc aatctttacc gctttgataa
     3961 cctgagcacg ccccctgccg ggaagccttt caccaatacc tccttcttct ggatttttgg
     4021 ggatggtaca ccgccacaag tggccggtac cgccccggta acacaccagt ttgccgcacc
     4081 cggcacctac aatgttcagt tggtattggt ggataccagt tattgcaatg cgccggatac
     4141 actcacccaa accttaaggg taagcccgtt ggtcgacgcg agtttccaaa caccgctatc
     4201 tggttgtgca ccgcatttgg ccgtgttcaa caacaccagt tcgggcgggc aacagttttt
     4261 ctgggatttt ggggacggca cgaccagcac attggccagc ccaaccaggc tatacaccat
     4321 accgggcgtg tatacggtga aactggtggc catcgacagc agcacctgca acattatcga
     4381 ttccaccacc caaaccataa cggtttcggg aagcccggtg gccgacttca gtttctcgcc
     4441 caatccgccg gaagaaaaca tcattaccac cttcaccaac ttaagtgaaa tagtgccaga
     4501 ataccgctgg ttttttggcg atggcgattc gctgatcacc ttccggagag acacgattgt
     4561 tcgacaccag ttcaggcaaa caggcactta caattcctgc ctggtggcca tcaaccagtt
     4621 tggctgccgt gataccattt gccggcctgt gtccatcatc atcaatccgc tgttggatgt
     4681 agtgtctgcc tttacgccca acggcgatgg cattaacgac agggccgtag tgatcggata
     4741 cggtatttcc aagctcacct tccgcattta caatcgctgg ggtcagctca tgtttgaatc
     4801 ggcggatgaa agagtgggtt gggatggaaa gtttaacgga aaactgcaac cgatggacgc
     4861 ttatggttat accttagatg ccgaaatggt aagcggtgaa aagattagga aatcgggcag
     4921 catcacactc atcaggtgat gctcagtaaa tagtgaatat gaccggcagc acaacaatgg
     4981 ggaggaaatg gtatcgcatc tgcacaggag tgatgatggt agtgggcatg ctatgcattc
     5041 gcccattgat tgcgcaggat ttgcatttca gtcaattcat gcacaatccg ctgcttacca
     5101 accctgccaa tacaggcttt aatcccgact ttgactaccg cgttggcgcc agctaccgca
     5161 accagtggtg gagcctgccg gtgccttaca aaaccaccag catctggggc gacgtgcagt
     5221 tgatgcgtga caagttctac aatggatgga tgggtctcgg tggggttatt ctccgcgacg
     5281 tggcgggttc gggaggattg cgatccacca aagcctacgc cagtgtagcc tggcaccagg
     5341 aactggggta caacagtttg ctttctggcg gcttcaacat tgggttcgcc accaaatcca
     5401 tcgacattgc cagtttccgt ttcgaaaacc agtggaacgg caaattcttt gatgcaggct
     5461 tgcccaatgg cgagccattt gcttactccc aaattggcta tctcgatttg caggccgggc
     5521 ttaactacgc ttattttccc agtgataacc tctacctgaa tgccggcgtc agcctcatgc
     5581 atttgaaccg tccccgcgaa tccttctttt cagaggatta cagcgacaac cgggtgccca
     5641 tgcgctacac cggctttgcc aatgccagca tcaaactcaa tgatcagtgg atcctcaatc
     5701 ccaatattta ctacagctac caaaccggat ccagcgaatt catgggagga ctgatggctc
     5761 aatacaacct tgggcagtat ggcgaacaac aactgatagg cggcgcttat tatcgtccgg
     5821 gtgatgcagc cattggggta gttgggctac agtggaaaga catcaggctt actttttctt
     5881 atgatgccac tacttccaac atgaagaatt tcaatggtgg caatggtgcg atggaatttt
     5941 ctcttattaa gttgggtact ttctctggcc gttcacccag gcaaacccgc tgtccggctt
     6001 tctgattcct tcctcaatta ctgaatgatg aggttgccgt tcaaacgcag ccttttgccg
     6061 ggtttgacgg taagttgact cccgctgctg atttgctggg ccacattcag gacgcattct
     6121 ccattggtct gatggtcgat cacaatttct gcaccggttg aaataaccga aggcggaatg
     6181 gcattgttgc tccagttgtt agcttcagac cacagcccgt tcccggtgaa ggtgtacact
     6241 actttcagcg gtatctgaat gcttttgttg taaataaaat caccggcatt ggtcaggtct
     6301 ccattggccg cattggctgc cacgtaaaat gtgatcagct tttcattgtt gccaggattg
     6361 gcgggagctg tccatttcag gtctgtgaag gtgtaaaagc cctgcggaga agtgaatggc
     6421 gcctctttgt ggcccagttc tcccgtcaat ggaataaccg ctgccttagg atcgcccgaa
     6481 ctgaatgtgc caatgggcat ggccaaagca ttcatcgccg ctatttcaaa accccaacgg
     6541 gttctgtctg catttgcatg ggcaatggcg atactgaagg tgtaggtggt gccgggtata
     6601 tagccgttgg ccggcaaccc ggtgacaatg atatcgcccc cgcttgcatt gagttcgttt
     6661 ccctggtggc aggaggtgca ggtttccaat ccggcccccg agtatccgcc gggcggggcc
     6721 gcactcctga aaaagtagtt ggaaaatgaa ctgcagaaag ccagcaggag aaaaacggtg
     6781 atcacggttt tccgggtggc tctgaacgga gttgaatgcg gcacggcaag cagttttggc
     6841 tgatggatgc ttaaagatcg agtattctgc ctgtatttac tgcccatttc accagtactc
     6901 atggtcaata gttcagtggc taccgaggcc cacaagctgc agtattattg ctgtttccac
     6961 atcatatcca caggaatttc cagctatcca catgcttttc ggaatgcggg ccaataaaat
     7021 gccctgaaac ccttgctgcg taagggtttc gagctgtgga aaagttaagg atttcaaaat
     7081 ggtgtagcaa agtgtcaaaa agtgttattt tgtgttagca agtggaaaaa ttaattcatg
     7141 gcaggatttc tcggtgaata tgaagcaacg gtagatgcca aagggcgctt cctattgccg
     7201 gccaatctga aaaaacagat gccggagggc accagcgtgc tggtgatcaa ccggggtatg
     7261 gatgactgcc tgtggatgta cttgctggac gactggaaga aggtggaaga caggctgcgg
     7321 gaggtgaacc cttatgacag ccgcgaaaac cggatggtgc gcaaagccct catagccggt
     7381 gcggtgtatg tggagtttga ctctgccggt cgcatcaatc taccgaaagt attggccgaa
     7441 tacgccgggc tcgacaaaga cattgttctg gccggcgata tcgacaaaat agaaatctgg
     7501 gacaaatcca ggtacgaaaa gctctttgaa tcgcttactc ctgagaaact gagcgccatg
     7561 gcgtcgggca ttctgggcag cggtacaaaa gccgatcacc tctaaaactt cacagctaat
     7621 taatggcgaa gcaaaaaaag gtgaaccggc cctctgactc tgaatccgca ggtagcacca
     7681 gcgcctccgc ataccatgta cccgtgatgt tgcacgaaac cgtggatgcc ttgcaggtaa
     7741 agcccgatgg cgtgtatgtg gattgcacgt ttggcggtgg cggccacatt cgcgaaatac
     7801 tgcgccggct gggtcccgct ggcaaactgg tgggcttcga ccaggatgcg gatgcggctt
     7861 ctaacctgcc cgtcgacgac cggctggtat tcatccctga aaacttcagg catgtgtacc
     7921 gcttccttcg gctgaacggt ctgctgccgg ttgatggcat catggccgac ctgggcgtga
     7981 gcagtcacca gttcgatgag gcagatcggg gtttcagtta tcgcttcgac gcacagctgg
     8041 acatgcgcat ggatcagcga cagcctgtaa cggcagcttc cattctcaac agctatgatg
     8101 ctgcggcctt gcaaaacatc ctgagccagt atggtgaagt gaccaatgcc cgcacactgg
     8161 cggccgcact ggtagctcgc aggcaacaag cttcgtacag taccatctcc gatttgctgc
     8221 aggtgttgga gcccttggcc aagggcaatc ccaaccgcta ctatgcccag gttttccagg
     8281 cactgcgcat tgaagtgaat gatgaactcg gggtgctgaa agaatggctg gaacaattgc
     8341 caaaagtgct gaagccgggt ggaagagtag ccgtcatcac attccattcg ctggaagaca
     8401 gattggtgaa gacctacttc cgcgatgggg gatttgaaaa aacggaagac cccatttacg
     8461 gcgccaagtc ccaatcgcct tttgtgctga tcaccaaaaa gccgattgaa gccagcgctg
     8521 aagaagtaaa gcgaaacgat agaagcagaa gtgcccgact aagggtggca gaattgaggg
     8581 aagtgaaaga gtgaataagt gaataagtga atgaagaatg agaagtgact gaaaccaaaa
     8641 acaacaaaca aaaaacaaaa aacaacaaac gcttgtcggc aaacaaagaa aataccaaaa
     8701 catcaaaggc tgcatggcgc aagtggctgc aaggccagtg gatagtgcag tacgtgcctt
     8761 ttatgttttt cctggcggtg ctggcagtgt tgtatata
//
LOCUS       DATIQF010000906         2681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_196813,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000906 DATIQF010000000
VERSION     DATIQF010000906.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2681
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196813"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..988)
                     /locus_tag="VLL95_15720"
     CDS             complement(<1..988)
                     /locus_tag="VLL95_15720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40358.1"
                     /translation="MIRTIRLTCFLLAISLGALAQNGQSKEELQRKTQQLLKEIEAVK
                     QDLEETQKSKKQTLGVLRSIEKKMNIRNQVIQNIKGEVYLVEKDIIRTYRDIDTLKSE
                     LNTLREQYAQSVVYAYKNRSNYDFLNFLFSASSFSDALKRVSYLKTYRSYREQKAGDI
                     QNTQKQLENKIASLSGKRQQKTEALSLEAKQMQELEVEKKEKDKVVAQISSQEKKLRN
                     ALATREKERRQLQNAIAAVIKREREEALRKEREEAKKRAEAAKANNAGANATASSGST
                     VKAPANTTAPPPTRKREASVLENTPEGLIRSQQFEENRGSLPWPVDRGIVTLH"
     gene            complement(1049..1858)
                     /locus_tag="VLL95_15725"
     CDS             complement(1049..1858)
                     /locus_tag="VLL95_15725"
                     /inference="COORDINATES: protein motif:HMM:NF025490.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4292 domain-containing protein"
                     /protein_id="HSR40359.1"
                     /translation="MRLFSVIVILAAVALGCRGTRKIQTAIQNVDTSAVVAVKKPSVD
                     SAAIKASILERVHANNVEFRYFLGKIKVDFEDNTGKNSNATAFVRIAKDSLMWISLTG
                     ALGIEGYRALITPDSVIVMAKQEKTVSYRSVAYLQDVINLPVDFYVLQNLIVGNPVFF
                     PDNIVSFKNNGSDLMALSIGQFFKHVITLDTTSNIITHSKLDDVDSLRNRTCDITFDA
                     YANIQNRMFSNMREITVTERSKLDIKLEFKQVVFDEPQSFPFTIPKNYQVK"
     gene            complement(1960..2406)
                     /gene="dut"
                     /locus_tag="VLL95_15730"
     CDS             complement(1960..2406)
                     /gene="dut"
                     /locus_tag="VLL95_15730"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF001862.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HSR40360.1"
                     /translation="MAASIVVRIVNKSGHPLPAYETAGASGLDLRANLETPIVLGSLD
                     RALVPTGIFVEIPKGYEIQIRPRSGLAAKQGITCLNTPGTIDSDYRGEVKVILINLDK
                     EPHTIHHGDRIAQMVLQQVSTIDWVSVESLSDTQRGEGGFGHTGKH"
     gene            complement(2406..>2681)
                     /locus_tag="VLL95_15735"
     CDS             complement(2406..>2681)
                     /locus_tag="VLL95_15735"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF014588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HSR40361.1"
                     /translation="DIDSKILLQRSIDQVWARGFRVVNVDATICLEAPKIKPYVDKML
                     LIISNILKVKLEDVSIKATTTEKLGAIGRKEGIAAMAVVLVSKNLND"
BASE COUNT          587 a          666 c          628 g          800 t
ORIGIN      
        1 aatgcaatgt cactataccc ctgtctacgg gccagggcag gctgcccctg ttttcttcga
       61 actgttgtga acggatcaaa ccttccggtg tattctccag cacgctggcc tcccgcttgc
      121 gggtgggtgg cggtgcagta gtgttggctg gcgccttgac agtagagcca ctgctggcag
      181 tagcattggc gccggcattg ttggctttgg cagcttcagc tctctttttc gcttcttccc
      241 gttccttgcg caaggcttct tctctttcac gcttgataac cgcggcaatc gcattctgca
      301 attgcctgcg ttctttttca cgggtggcca aagcattcct cagcttcttt tcctggctgc
      361 tgatctgtgc tactactttg tccttttcct ttttttccac ctccagttcc tgcatctgct
      421 ttgcttccag cgacaatgct tctgtctttt gctggcgctt tccgctcagc gaagcaattt
      481 tattttccag ttgcttctgc gtattctgga tatcgcccgc cttttgttcg cgatagctcc
      541 ggtaggtttt caggtacgaa acccttttga gcgcatcact gaaactgctg gctgaaaaca
      601 aaaagttcag gaagtcgtag ttgctgcggt tcttgtaggc atataccaca ctttgcgcat
      661 attgctctct cagcgtattc agttcgcttt tgagtgtatc gatgtccctg taagtgcgaa
      721 tgatgtcttt ctctaccagg tacacctctc cttttatgtt ttggatgacc tggttgcgga
      781 tgttcatttt cttttcaatg ctgcgaagca ccccaagcgt ttgctttttg cttttctggg
      841 tttcctccaa atcctgtttc accgcctcaa tttctttcag caattgttgc gtcttgcgct
      901 gcagttcttc tttcgactgg ccgttttgtg ccagggcacc caaagaaatt gccagcaaaa
      961 aacaggttaa acggatggtg cgaatcatgc agtgaaattt aatggtaaag atggctgatg
     1021 gttctgaaac gccattcggc tgaatgtatt atttgacctg gtaattttta ggaattgtaa
     1081 acggaaagga ttgtggctca tcaaacacta cctgcttaaa ttccagcttg atgtccagtt
     1141 ttgatctttc ggtcacggtt atctctctca tattgctgaa cattctgttc tggatattgg
     1201 cgtaagcatc gaaagtgatg tcgcaggtgc gattgcgcaa tgagtccaca tcatccagtt
     1261 tgctgtgagt aatgatattg ctggtggtgt caagggtaat aacatgttta aaaaactggc
     1321 cgatggacaa ggccatcagg tcactcccat tattcttgaa ggacacgata ttgtccggga
     1381 agaatacggg gttaccgaca ataagattct gcagcacgta aaaatccaca ggaagattga
     1441 tcacatcctg caaataggcc acactgcggt aggaaacggt tttctcctgc ttggccatca
     1501 cgataaccga atcgggggtg atgagtgccc tgtatccttc aatgcccaaa gctccggtga
     1561 gcgatatcca catcagcgaa tctttggcaa tccttacaaa agcggtggca ttgctgtttt
     1621 taccagtatt gtcttcaaaa tcaactttga tttttccgag gaaatacctg aactctacgt
     1681 tgttggcatg caccctttcc agaatggaag ctttgatggc agcagaatca acagaaggtt
     1741 tctttactgc caccactgca ctggtgtcaa cgttctgaat ggcggtttgg attttacggg
     1801 tacccctgca ccccaatgct accgccgcca gaatgacaat cactgaaaaa agccgcataa
     1861 aaatcaattg ctggttcgat gtgaaacaaa tatgaagaaa tgtactggca aggcaggtta
     1921 aaagctatcc aacattggta caatttggtt gaaaacgcct cagtgtttac cggtgtgtcc
     1981 aaatccgcct tcgccgcgtt gcgtatcgct caacgattcc accgataccc aatcaatggt
     2041 gcttacctgc tgcagcacca tttgcgcaat gcgatcgccg tggtgaatgg tgtggggttc
     2101 cttgtcgagg ttgatcagta tcacttttac ctcgccacgg taatcgctat cgatggtgcc
     2161 gggggtgttg aggcaggtaa tgccctgttt tgcggccagc ccgctcctcg gccttatctg
     2221 gatttcatac cccttgggta tttccacaaa aataccagtg ggaaccaatg ccctatccaa
     2281 agagccgagt acaatgggcg tttcaaggtt tgccctgaga tcgagcccgc tggctcctgc
     2341 tgtttcgtag gcaggaagcg ggtgtccgga tttgttgacg atcctgacta ctattgatgc
     2401 cgccattagt cgttcaggtt tttgctgacc aaaaccacgg ccatggccgc aataccttcc
     2461 tttcttccaa tagcgcccaa cttctcggtg gtagtcgctt tgatgctgac atcttccagt
     2521 ttcactttca aaatattgga aatgatcagc agcattttgt cgacataagg tttgatcttg
     2581 ggtgcctcca ggcaaatggt agcatccacg ttcactacgc gaaagccacg tgcccatacc
     2641 tggtcgatgc tgcgctgcaa caggatcttg ctgtcaatgt c
//
LOCUS       DATIQF010000907         1711 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_14349, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000907 DATIQF010000000
VERSION     DATIQF010000907.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14349"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..983)
                     /locus_tag="VLL95_15740"
     CDS             complement(<1..983)
                     /locus_tag="VLL95_15740"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR40362.1"
                     /translation="MLRFLLEKEFKQIFRDKAILRMMFIMPVIQLVVLPLAANYEVKN
                     VLLAVVDHDRSTYSRQLVDKVTASGYFKLAGYSNNYEAAMRLIEKDKADIILEFPAGF
                     EKQLIRENEAPLHMAVNAVNGTKANIGAGYLSTIIRQYNNEIRQRWLQLPKLPDQPQI
                     QTTFSNWYNTGMDYKQFMVPGILVILLTMVGAFLTALNIVKEKETGTIEQINVTPVKK
                     QFFILGKLIPFWIMGQISLTLGLTIARLVYGIVPEGPLPLIYLFSSVYLLAVLGLGLL
                     ISTYAHTQQQAMLIAFFCMMIFILLGGLYTSIDSMPQWAQTITRFNPVSYF"
     gene            complement(1089..>1711)
                     /locus_tag="VLL95_15745"
     CDS             complement(1089..>1711)
                     /locus_tag="VLL95_15745"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR40363.1"
                     /translation="LYNQQLKGAFNFVPGVMAMILLLVCTMMTSISIVREKENGTMEV
                     LLASPLRPFLIIIAKAVPYLVLSMVNVASILLLSVYALELPIAGSLALLLAESMLFTI
                     TALTLGLLISTITASQQIAMMISLVGMFLPTLMFSGFMFPVENMPLPLQVISNIIPAK
                     WFFIIVKSVMIKGLGFHSIWKETLILGGMTLFLLTIAVRKFKTRLA"
BASE COUNT          418 a          395 c          452 g          446 t
ORIGIN      
        1 ataaagtaac tgaccgggtt gaacctggta atggtttgtg cccactgcgg catgctgtcg
       61 atgctggtat aaagaccgcc cagcaaaata aagatcatca tgcagaagaa ggcaatgagc
      121 atggcctgtt gctgtgtatg cgcataggtg ctgatgagca ggcccaaccc cagcaccgcc
      181 agcaggtaca cactgctgaa caggtaaatg aggggcagtg gtccttcggg tacgatgccg
      241 tacaccagcc gggcaatggt cagccccagc gtaagactga tctgtcccat gatccagaag
      301 ggaatgagct tgcccaggat gaagaattgt tttttcaccg gcgttacgtt gatctgctca
      361 atggtacctg tttctttttc cttcacaatg ttgagggcgg tgaggaaggc gccaaccatg
      421 gtcagcaata tcaccagtat gccaggcacc atgaactgtt tgtagtccat gccggtattg
      481 taccagttgc tgaaagtggt ttgtatttgc ggctgatcgg gcagtttggg caattgcagc
      541 cagcgttgcc ggatctcatt gttgtattgc cggataatgg tgctgaggta gcctgcacca
      601 atattggctt tggtaccatt taccgcattg actgccatgt gcagtggtgc ttcgttttcg
      661 cggatgagtt gcttttcaaa acctgcagga aattcgagaa tgatatcggc tttgtctttt
      721 tcaatgagtc gcatagccgc ttcataattg ttgctgtagc ctgccagttt gaaataaccc
      781 gaggccgtca ccttgtctac caactgccgg ctgtaggtgc ttctgtcgtg gtccaccacg
      841 gccagcagca cattcttcac ttcatagttg gctgccagtg gcaacactac caactgtatc
      901 accggcatga tgaacatcat ccgcaaaatg gctttgtcgc ggaagatttg tttgaattct
      961 ttttcgagca ggaagcgaag catcagaaca tttgttggtt tgaagtttgt cgtttgttgt
     1021 ttttggtttg tcgtttcaca ttctctatct atcattcatc attcacaaat catcattcat
     1081 catttgaatc aggccagcct ggttttgaat ttgcgtacgg cgatggtgag caggaaaagc
     1141 gtcatgccgc cgagtatcag cgtttccttc cagatcgaat ggaagccaag gcctttgatc
     1201 atcacacttt ttacaatgat gaaaaaccat ttggccggaa tgatattgga aatgacctgc
     1261 aagggcagtg gcatgttttc taccgggaac atgaagccgc tgaacatgag cgtgggcagg
     1321 aacatgccaa ccagcgagat catcatggct atttgctgcg aagcggtgat ggtgctgatg
     1381 agcaaaccca gggtgagggc tgtgattgtg aagagcatgc tttcggccag cagcaatgcc
     1441 aggctgccgg caatcggcag ttcgagtgca tacacactca acagcaaaat gctggccaca
     1501 ttcaccatgc tgagtaccag gtatggaacg gctttggcaa tgatgataag aaaggggcgc
     1561 aggggagagg ccagcaacac ttccatggtg ccgttttctt tttcgcgtac aatggaaatg
     1621 gaagtcatca tggtacacac cagcaacagg atcatggcca tgacgcccgg cacaaaattg
     1681 aaagcgcctt tcaactgctg gttgtacagc a
//
LOCUS       DATIQF010000908         2823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_105286,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000908 DATIQF010000000
VERSION     DATIQF010000908.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2823
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105286"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..938)
                     /locus_tag="VLL95_15750"
     CDS             complement(<1..938)
                     /locus_tag="VLL95_15750"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR40364.1"
                     /translation="MRLTLLCCSIGLLMSHLALSQSIDFEKYNPPSTLVVPQHPVSRS
                     RFPFVDVHNHQRNMSPGDLDQLIADMNKLNMQVMVNLSGGSGSSLQQKVQAIRSKYPN
                     RFLAFANVDFNGVGTAGWTEKAVAQLEADVRNGASGLKVFKNLGFSVKDNEGKRVTVD
                     DPRLDAIWAKCGQLKIPVLIHTADPESFWHEPNEDNERWLELKTHPNRQKGNDNPAPW
                     QTLIDEQHRMFRKHPSTTFIAAHFGWYPNNLMKLDSLLTQMPNVVVEFGAVIAELGRQ
                     PRQAKAFFEKYQDRILFGKDSWVPEEYATYFRVLETT"
     gene            complement(1023..1592)
                     /locus_tag="VLL95_15755"
     CDS             complement(1023..1592)
                     /locus_tag="VLL95_15755"
                     /inference="COORDINATES: protein motif:HMM:NF019247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1579 domain-containing protein"
                     /protein_id="HSR40365.1"
                     /translation="MKIIFCSLAMVLGMPLFAQQPSQEEAMKAMNAYRTPGEMHKMMA
                     SWDGTWECEYSMWMEPGKEPFKSKGTMTSKMLLDGRYNEMHYNGDFMGEPMKGVSMSA
                     WDNAKKAFITTWIDNFGTGVMWLEGPWDAATKTIQLYGKMTDPVSGGDTKVRQFVTMI
                     DNNTQKMQMWVDYGGTEMKTMEMIMKKKK"
     gene            complement(1703..2158)
                     /locus_tag="VLL95_15760"
     CDS             complement(1703..2158)
                     /locus_tag="VLL95_15760"
                     /inference="COORDINATES: protein motif:HMM:NF015048.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog domain-containing protein"
                     /protein_id="HSR40366.1"
                     /translation="MNLTQLYKYRDLAVSAKWKELEDLFNKSVQLKHIGARIDLSNPE
                     HPRAIIDKVEEYHLGGIGSDAVHGGVIAGLADLALGLLGLLYYRDGMTATAQLTVHYL
                     KPFRTSSISGTAITQKVVGNRIFGTVELFNDKGEMCAIAYGALAKGISM"
     gene            2433..2771
                     /locus_tag="VLL95_15765"
     CDS             2433..2771
                     /locus_tag="VLL95_15765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40367.1"
                     /translation="MTAELMKGVLRFVKGLFATCKEVGDVVLVDRLQFFRYTHFKKNQ
                     CWYSFFILLGIISASVSPCLADGGIGYKGIYINTKGTKTCCATSAATSTISGTCAGAK
                     YWNAGWCWPG"
BASE COUNT          665 a          678 c          675 g          805 t
ORIGIN      
        1 gtggtttcga gtaccctgaa gtaggtggca tattcttctg gcacccacga atcttttcca
       61 aacagaatac gatcctggta tttttcgaaa aaggcttttg cttgtcgcgg ctgacgaccc
      121 agttcggcta taaccgctcc aaactccacc accacgttgg gcatttgtgt aagcaaggaa
      181 tcgagtttca tcaaattgtt gggataccac ccgaagtgcg ccgcaataaa cgtagtggat
      241 ggatgcttcc tgaacatgcg atgttgttca tcaataagcg tttgccaggg tgcggggttg
      301 tcattgcctt tttgcctgtt gggatgtgtc ttcaattcca gccatcgctc attatcctcg
      361 ttgggctcgt gccaaaatga ttctggatcg gcagtatgga taagcacggg gattttcaac
      421 tgaccgcatt ttgcccaaat ggcgtccaaa cgcggatcat caacagtcac tctttttcct
      481 tcattatcct taacgctgaa tcccaggttt ttgaaaacct tgagaccact ggccccgttg
      541 cgaacatcgg cttctagctg ggctaccgcc ttttcagtcc agccggcagt acctacgcca
      601 ttaaaatcaa cattggcaaa tgccaggaag cggttggggt atttagaacg aatggcctgc
      661 actttttgct ggaggctgct tcctgatccg ccgctcagat tgaccatcac ctgcatgttc
      721 agcttgttca tgtctgcaat gagctggtca agatcgcccg gtgacatgtt ccgttggtga
      781 ttgtgcacat caacaaatgg aaaccgggaa cgactcaccg ggtgctgtgg cacaacgaga
      841 gtggacgggg gattgtattt ttcaaagtcg atggattgcg acaatgcaag gtggctcatc
      901 aaaagcccga tgctgcagca aaggagtgtc agacgcatgc tccgaaatta atgcgcagct
      961 gctatcaccg tttaccgcct gacacaattc gcccggagtt gggcaaatac cacctcaatg
     1021 gctcacttct tttttttcat gatcatttcc atggtcttca tttcagtgcc gccatagtcc
     1081 acccacattt gcatcttttg ggtattgtta tcaatcatgg tcacgaattg acgcactttg
     1141 gtatcacccc ccgaaaccgg gtcagtcatt ttgccgtaca attgaatggt tttggtggcc
     1201 gcatcccagg gtccttccag ccacattacc ccggtgccaa aattgtcgat ccatgtagtt
     1261 ataaaagcct tttttgcatt atcccatgca ctcatcgata cgcctttcat gggttcgccc
     1321 atgaagtcgc cgttgtaatg catttcatta taacgtccgt ccagcagcat cttgctggtc
     1381 atggttcctt tgcttttgaa tggttccttg ccaggttcca tccacatgct gtactcacac
     1441 tcccaggtac catcccagga tgccatcatc ttatgcattt ctccgggagt gcggtatgca
     1501 ttcatggctt tcattgcttc ttcctgtgaa ggctgttgtg caaacagggg catgcccagc
     1561 accatagcaa gggagcaaaa aataattttc atggcagatt gattcagggg tgaagatttc
     1621 gtttcagcca aaaggtaata caatataaat gccttgtcaa gatttggcat gacgaggatg
     1681 attccatcca aaccgaggta ccttacatgc tgatgccttt ggccagggca ccgtaggcga
     1741 tggcgcacat ttcacccttg tcgttgaaca attccactgt gccgaagatc ctgttgccca
     1801 ctactttttg agtaatagcg gtgccactga tgctgctggt cctgaaaggc ttcaggtaat
     1861 ggacggtcaa ttgggcggta gcggtcatcc cgtcccggta atacaacagt cccagcaggc
     1921 ccagtgccag gtcggccagg ccggcaatga cgccgccatg gaccgcatcg ctgccaatgc
     1981 cacccaaatg atattcttcc accttatcga ttatggctct cggatgctcg ggattcgaca
     2041 ggtcgatacg agctccaatg tgtttgagct gcaccgattt gttgaacagg tcttccagtt
     2101 ctttccattt tgcgcttacc gccaggtcgc ggtatttgta taattgggtg aggttcataa
     2161 tacccgggct ttagatatga gatggggcgt tgaaagtacg taggaatgga taaatataac
     2221 gaagaggaat accgctattg agatcgaacg aaaataccgg cagaacgttg tttaatcgaa
     2281 taggatgaat atcttagtgt ctgttttaca catttcttgc ccttcaccaa ttgcttgttt
     2341 acctgcgtgt gctgatttga cccggtgatg cccgtttact gaccacccgt ttttgacata
     2401 atccctcgct gaaagtggga tatcatgttg aattgactgc tgaacttatg aaaggagttt
     2461 tgcgctttgt aaaaggattg tttgccactt gtaaagaggt gggcgatgtt gttttggttg
     2521 acaggttaca attttttcgt tacactcatt tcaaaaagaa tcaatgttgg tattcatttt
     2581 tcatactcct ggggattatt tctgcaagtg tttctccttg tcttgctgat ggtggcattg
     2641 gttataaggg catttacatt aataccaaag gaacaaagac ctgctgcgca acatcggcgg
     2701 ccacttcaac gatttcagga acctgcgctg gggcaaaata ctggaacgct ggctggtgct
     2761 ggccgggcta aaaaaagacc cgtttgaaat aatgtttgag ctggaagagg cacaccgcta
     2821 tta
//
LOCUS       DATIQF010000909         2661 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_196823,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000909 DATIQF010000000
VERSION     DATIQF010000909.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2661
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196823"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2661)
                     /locus_tag="VLL95_15770"
     CDS             complement(<1..>2661)
                     /locus_tag="VLL95_15770"
                     /inference="COORDINATES: protein motif:HMM:NF040284.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PKD-like domain-containing protein"
                     /protein_id="HSR40368.1"
                     /translation="NFSSGTFTISGTPTQTGTFNFTVSAVGLCLNSSINCSITINPSS
                     TLVLSSAAATGTQTVCVNSNIANITYLAGGGATSVTVSGLPAGVAGNYNAGSKVFTIS
                     GTPTVTGTFNYTVTTSGLCNNLSLNGTITVDTYPVGGTTSNSNGLFACAGANGGTISL
                     AGQQGLVNRWESSTDGGLNWTAIASTNTSITYQNINQTTWYRAVVGKAVCSGTLAYSA
                     HTTVSVVQQAPANGGLTVTYAPQFICTGSSTLSATGFGTGTTIGTIESGSFDFAGVNL
                     DGPGLWRKTLTANWDPQDKINIEASTNNADNTAFNLTNGPKTFFGTNGCSQITYNNNP
                     LGGQVNNTKFMLVSGPNLSSLETPIFSLVGLQTASLDWWEAYDLKAGASIKIEISTDA
                     GVTYNTTLRTITGPVTYGNPLDFAQTSLNLNTYVGLANLRVRFTYTGTTCSSWGLEMA
                     TITKGITPATYTWNLIDPIPAVGTPPAHYLNVFQNPTVVVSPPAPNTTNAPITYTYSL
                     QSSAGGCVSDIPVTVNPTPVALATAPPPTCSGTTLNIPITGNVVGTTFTWTRSVNPNV
                     TTTVSSCNSNCNAITGTVTNTSTTTQTITYTVTPYYSNGGVSCPGTPINIDVTILPRP
                     TATFTGSWDCQSGMATLTLNTANSGAVAGVLSPGSIAVSGSAPGTITIPPFALSSTTT
                     YSFSSLTIGGCPLSAMPAPVTVTVPPLGPAGLWTGEVDTDWFNKCNWANRQVPDNSVD
                     VTIPGNSINFCEINPTSPFAVLYGYTARSRHIQISNRQLRFTPAGGREALLNAWGNLT
                     IQNDTALVNMTAGGKIELAGDWINNRGTVGFSEGIGTLEMIGGTAYNSIHNAGYIQDI
                     STADATSTEAFYNLTINNTNNYALRDEVTL"
BASE COUNT          664 a          597 c          709 g          691 t
ORIGIN      
        1 tgcagcgtca cttcgtcccg cagggcataa ttgttcgtgt tgttaatggt aaggttgtag
       61 aaggcctctg tcgaagtagc atccgctgtt gatatgtcct ggatgtaccc ggcattgtga
      121 atggaattat aggcagtacc accgatcatt tccagtgtac caatgccttc tgagaagccg
      181 actgttccgc ggttattgat ccagtcgccg gccaattcaa ttttaccacc cgcagtcatg
      241 ttcactaatg cagtatcatt ttgaatggta agattgcccc acgcattcag caatgcttct
      301 cttccaccgg ctggtgtaaa acgcaactgg cgattgctga tctgtatatg ccttgaccgt
      361 gctgtataac catacaacac tgcaaatggc gatgtaggat tgatttcaca gaagttgatg
      421 gagttaccgg gaatggtcac atccacagag ttatcaggta cctgcctgtt ggcccagtta
      481 cacttattga accagtcagt atccacttcg ccagtccaca atcctgcagg gccaagcggc
      541 ggcacagtaa cagtaacagg agcaggcata gcagaaagcg gacagccgcc gatagtgagt
      601 gaagagaaac tgtacgtagt ggtgctggat aatgcgaacg gaggaatggt aatggtgccg
      661 ggtgcagaac ctgatactgc gatgctaccc ggagacaaca cacctgcaac cgcaccagaa
      721 ttcgctgtat tgagcgtgag ggtggccatg cccgattggc aatcccatga gccggtgaag
      781 gtggcagttg gtcttggcag aatggttaca tcaatattga tgggtgtacc aggacaggat
      841 acgccgccat ttgaatagta tggtgttacc gtgtaggtaa tggtctgtgt ggtagtggat
      901 gtgttggtaa cggtaccggt gatggcgtta cagttcgaat tgcaactgct gacagtggta
      961 gtaacattcg gattgacact cctggtccag gtgaaagtgg tacctaccac atttcccgta
     1021 atcggaatat tcaaagtagt acccgaacag gtaggcggcg gcgcggtagc caatgccaca
     1081 ggtgttgggt tcaccgttac aggaatatca gaaacacaac cccctgcaga agactgcaag
     1141 ctataagtgt aggtaatagg tgcattggta gtattcggtg caggtggtga taccacaaca
     1201 gtaggattct ggaatacgtt cagatagtgg gccggtggtg tacctaccgc aggaatggga
     1261 tcaataaggt tccaggtata ggtagcaggg gtaatgcctt ttgtaattgt cgccatttcc
     1321 agaccccaac tgctacaagt ggttcctgtg taagtgaacc ttacacgaag atttgccaat
     1381 cccacatagg tattcaggtt gagagatgtc tgagcaaaat caagcgggtt tccataggtc
     1441 accggaccag taatggttcg cagggtagta ttataggtca cacccgcatc tgtcgaaatt
     1501 tcaattttga tggatgctcc ggctttcaag tcataagctt cccaccaatc taggctggca
     1561 gtttgcagcc cgactaaact gaatatgggt gtttccagtg aagaaaggtt cggaccggat
     1621 accaacatga acttggtgtt gttcacctgg ccacccagcg ggttattgtt gtacgtaatc
     1681 tgcgagcatc cgttggtgcc aaaaaatgtt ttaggtccat tggtaaggtt gaaggccgta
     1741 ttgtctgcgt tgttggtaga agcctcaatg tttattttat cctgtggatc ccagttagcc
     1801 gtaagtgttt ttctccatag ccctggaccg tcgagattga cacctgcaaa atcaaatgaa
     1861 ccgctttcta ttgtgccaat ggttgtgcct gttccaaagc cagttgcaga aagcgtggaa
     1921 ctacctgtgc atataaattg cggagcataa gttacggtaa ggccgccatt ggcaggcgct
     1981 tgctgcacca cactcactgt tgtgtgcgca gagtatgcca acgtaccgct acaaaccgcc
     2041 tttcctacca ctgccctgta ccaggtggtc tggttgatat tctggtaagt aatgctggtg
     2101 ttggtagaag ctatggcagt ccagttcaga ccaccatcgg tagaagattc ccacctgttt
     2161 accaggcctt gttgccctgc cagtgaaatg gtaccaccgt tggctccggc gcaggcaaac
     2221 agaccatttg agttggaggt agttccgcca acaggataag tatctactgt tattgttccg
     2281 ttcaacgaaa ggttgttaca aaggccagat gtagtcactg tataattaaa agtaccggta
     2341 acagtaggcg ttccgctgat ggtgaatact ttgctgccag cgttgtagtt gccagcaact
     2401 ccggctggca ggccgctgac tgttacactg gtagccccac caccagccag gtatgtgatg
     2461 ttggcaatat tgctgttcac gcaaaccgtt tgagtaccag tagcagctgc agaactgagc
     2521 accagtgttg agcttggatt aatggtaatg ctgcagttaa tagaactatt caggcaaagc
     2581 cctacggctg acactgtgaa attgaatgtg cctgtttgag ttggggtacc tgaaatggtg
     2641 aaggtgccac tgctgaagtt g
//
LOCUS       DATIQF010000910         3372 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_151487,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000910 DATIQF010000000
VERSION     DATIQF010000910.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3372
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151487"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..552
                     /locus_tag="VLL95_15775"
     CDS             <1..552
                     /locus_tag="VLL95_15775"
                     /inference="COORDINATES: protein motif:HMM:TIGR00567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HSR40369.1"
                     /translation="GKLLVTRFDNRITVGRIVETEAYNGIIDKASHAFGGRRTTRTEI
                     MYSSGGVAYVYFCYGMHHLFNIVTGKADVPHAVLIRALEPLEGIEVMLQRRGKTQPDH
                     ALTKGPGSVAQAMGISTLHTGLSLQSSDLYLADDGMMYEREEVIATPRIGVAYAGEDA
                     LLPCRFLVKGNQYVSGKKNQNLG"
     gene            complement(549..1553)
                     /locus_tag="VLL95_15780"
     CDS             complement(549..1553)
                     /locus_tag="VLL95_15780"
                     /inference="COORDINATES: protein motif:HMM:TIGR03519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PorP/SprF family type IX secretion system
                     membrane protein"
                     /protein_id="HSR40370.1"
                     /translation="MKIVVSIFFTLLVLTSQAQDPRFSQFFASPLTLNPALTGRFDGN
                     LRVAGNYRNQWPTINNAFTTYSLSVDAPILTGRLPEIDRLAVGIQGFADEQADGVLKN
                     TYWSLSTAYHKGLDEDGFHSVTVGFQGTYAQKRLNTANLKFEDQLRGDGFTGITNEIF
                     DPQQTNINYFDLNAGMLFSGVFEGNINYYAGASMYHINRPRESFKGALFDLNPRYTVH
                     AGAYFPVGATTTLHTTALYQNQAGASEAVLGGALGFNLNNDIEYSPTTFYAGSWYRFG
                     DALIPYIGLEFGSWRFGASYDVNTSSLRAASNSRGGFELSIIFINKKQDAVSLNCPKF
                     "
     gene            complement(1642..2292)
                     /gene="upp"
                     /locus_tag="VLL95_15785"
     CDS             complement(1642..2292)
                     /gene="upp"
                     /locus_tag="VLL95_15785"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: protein motif:HMM:NF001097.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HSR40371.1"
                     /translation="MVVNLSEQNSLVSTWVAELRDVKVQADRMRFRRNLQRIAEVAAY
                     EISKELEWTTVEVETPLGTKEVASLKQQPVLGTILRAGLPMHEGLLSYFDRADNAFVS
                     AYRKHHRDGSFEISLEYVSCPDLDGRVLILADPMLATGASLVKTIHELKEEGDMAGIH
                     IVCAIACTVGIEYVLREMPGVKIWCGDIDDELTAKGYIVPGLGDAGDLAYGAKMQQ"
     gene            2438..>3372
                     /locus_tag="VLL95_15790"
     CDS             2438..>3372
                     /locus_tag="VLL95_15790"
                     /inference="COORDINATES: protein motif:HMM:NF015647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HSR40372.1"
                     /translation="MFYRAIGIMSGSSLDGLDIVFAEFTETRGVWTFEIKAADCFPYS
                     AEWQQQLKDAIHLNAQQYMRLHTAYGHYIGEQVKAFIDTHQLHHQVQLISSHGHTTFH
                     EPAHRMTGQLGDGAAIAAVTGINVVSDLRAMDVALGGQGAPIVPMGEKLLFAQYPLLL
                     NIGGIANVSASLGDEYIAFDICLANRVLNAWAGQAGKAYDDGGQMAASGFVRDEVLSA
                     MNGQPYYAQPFPKSLANDFGTDVIFPLLKNAALSVPDALRTMVEHIAIQTTRSVGRLL
                     QRMPAEKPVSMLVTGGGAHNAFLIERLEASLKPMGV"
BASE COUNT          778 a          844 c          957 g          793 t
ORIGIN      
        1 gggaagctgc tggtgacgcg tttcgacaac cgcattactg ttggccgtat cgtggaaacg
       61 gaagcgtaca atggcattat cgacaaagcc agccatgctt ttggcggccg gcgtaccacc
      121 cgtaccgaga tcatgtacag cagtggaggg gtggcctatg tttatttctg ttatggcatg
      181 caccacctgt tcaatattgt tacgggcaaa gctgatgtgc ctcatgcggt gttgatccgt
      241 gccctcgaac cattggaagg cattgaggtg atgttacagc ggcgcggcaa aacacagccg
      301 gatcatgctc tcaccaaagg cccgggaagc gtggcgcagg ccatgggcat cagcaccctg
      361 cataccgggc tcagcctgca aagcagcgac ttgtacctgg cagatgacgg tatgatgtac
      421 gaaagggaag aagtgattgc aaccccacga ataggcgtgg cttacgcagg ggaagatgcg
      481 ttgctgccgt gtcgtttttt agtgaagggc aatcaatacg tgagtggaaa gaagaaccag
      541 aacctcggtt agaacttggg gcagttgagg gaaacggcgt cctgcttttt gttgatgaaa
      601 atgatggaca gttcaaaacc tccgcggctg ttgctggctg cccgcagcga tgaggtattg
      661 acatcgtaag aggctccaaa gcgccaggaa ccaaactcca ggccgatgta agggatcagg
      721 gcatcgccaa aacgatacca actcccggca taaaaagtgg tggggctgta ttcgatatcg
      781 ttgtttaggt tgaagccaag ggcaccaccc aatacggctt cgctggcgcc tgcttgattt
      841 tggtacaggg ccgtggtatg taaggtggtg gtggcgccta ccgggaagta agcaccggca
      901 tgcacggtat agcggggatt caggtcgaac agcgctcctt tgaatgattc cctggggcgg
      961 ttgatatggt acatggaagc accggcgtaa tagttgatgt ttccttcgaa tacgccgctg
     1021 aagagcatgc ccgcattcag gtcgaaatag ttgatattgg tttgctgcgg atcgaagatc
     1081 tcattggtga tgccggtgaa accatcgccg cgaagttggt cctcaaattt gaggttggcg
     1141 gtgttgaggc gcttttgcgc ataggtgccc tggaagccca cggtcacaga gtgaaagccg
     1201 tcttcatcca agcctttgtg gtatgccgta gaaagcgacc agtaggtgtt tttcaaaacg
     1261 ccatcagcct gttcatcagc aaagccctgt atgcccactg ccagcctatc gatctcgggc
     1321 aggcggccgg tcaggatggg ggcatctacg ctgaggctgt aagtggtaaa agcgttgttg
     1381 atcgtaggcc attggttgcg gtaattgccg gccacccgca ggttgccatc aaaccggcct
     1441 gtcagcgcag ggttgagcgt aagcggtgac gcaaagaact ggctgaagcg tggatcctgc
     1501 gcttgggaag tcagtaccaa taaggtgaag aatatggaaa ctacaatttt catgcactga
     1561 aacaataaac aaaaaaggct aaagtaaaca tgcgttgcat gtaaacagtt ttttgttgga
     1621 tgctttaaca atacgtagcg attactgttg cattttggca ccataggcca ggtcgccggc
     1681 atcgcccaag ccaggtacga tgtacccttt tgccgtcagt tcgtcgtcga tatcgccgca
     1741 ccagatcttc acgccgggca tttcgcgaag cacgtattca atgcccacgg tgcaggcaat
     1801 ggcacataca atgtggatgc cggccatatc gccttcttct ttcaattcat gaatggtctt
     1861 caccagcgaa gcgccggtgg ccagcatggg gtcggccaaa atgagcaccc gtccatcgag
     1921 gtcggggcag cttacgtatt ccaggctgat ctcaaaagaa ccatcgcggt ggtgcttgcg
     1981 gtaggcagaa acaaaagcgt tgtcggccct gtcgaaatag ctgagcaaac cttcgtgcat
     2041 gggcagcccg gcccgcaata tggtgcccaa tacgggctgt tgtttcaatg aagccacttc
     2101 tttggtgccc agcggggttt ccacttccac ggttgtccat tccagttcct ttgatatttc
     2161 ataggcggcc acttcggcaa tgcgttgcag gttgcgacgg aaccgcatgc ggtctgcctg
     2221 cactttcaca tcccgcaatt cggccaccca ggtacttacc aaactattct gttcgctcag
     2281 gttaacaacc atcttgtttt gcttttgatg atgaggtagg gcgatagttg cctgcactgc
     2341 atttcgttcg caagcttccg aaggcggcaa ctgtttccca ttttggactt caaatatcca
     2401 atttcccccc gaactttccg gcctcaacag cgcaattatg ttttacagag ccattggcat
     2461 catgagcggc agcagcctcg acggactgga tattgtattt gcagaattta ccgaaacccg
     2521 cggagtgtgg actttcgaga tcaaagcggc cgattgtttt ccttacagtg ccgaatggca
     2581 acagcaactg aaagatgcca ttcacctgaa tgcacaacag tatatgcgcc tgcataccgc
     2641 ttatggtcat tacatcggcg agcaggtgaa agcctttatt gatacacatc agttgcatca
     2701 ccaggtgcag ctcatcagca gtcatggcca taccactttt catgaacctg cccaccggat
     2761 gaccggccag ttgggtgatg gagctgctat tgctgcggta accggcatca atgtagtgag
     2821 cgacctgcgg gccatggatg tggcgctggg cgggcaggga gcccccattg tgccgatggg
     2881 agagaaactg ttgtttgcgc agtacccctt gctgctgaac attggaggca ttgccaatgt
     2941 atcggccagc ctgggcgatg aatacattgc cttcgacatt tgcctggcca accgggtgct
     3001 gaatgcgtgg gctggccagg caggcaaagc gtacgacgat ggcggccaaa tggcggcttc
     3061 cgggtttgtg agggatgaag ttttgagcgc tatgaacggc cagccttatt atgcgcagcc
     3121 cttcccgaaa tctctggcca atgattttgg cactgatgtt attttcccat tgctcaaaaa
     3181 cgcggcattg agcgtgcctg atgccttgcg caccatggtg gaacatattg ccattcaaac
     3241 cacccgcagt gtgggccgat tgctgcagcg gatgccggca gaaaaaccgg tgtctatgct
     3301 ggtgacaggc ggcggcgccc ataatgcctt tctcatcgaa aggctggagg cgtccttaaa
     3361 accaatgggc gt
//
LOCUS       DATIQF010000911         1835 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_136192,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000911 DATIQF010000000
VERSION     DATIQF010000911.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136192"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..605)
                     /locus_tag="VLL95_15795"
     CDS             complement(<1..605)
                     /locus_tag="VLL95_15795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40373.1"
                     /translation="MIVFLWCSQLSVAQMVEVYGGNKRAGVDILWFKYFRKADTSRTP
                     WLFFSRKRASVNYRNQSLWGSNNAVSYNFKNGLGIVAVGAFGSNGFVPKAGVQYFKQK
                     GDFLFFGWLVADLQSNGNVDLFGLFRYQPPLNARWRLLAQAELFPIYNPGSKLWNLTQ
                     RFRLGLKYQSWGGGLMLDLNQTGKESFTTTHNVGGFIRHDF"
     gene            complement(696..1457)
                     /locus_tag="VLL95_15800"
     CDS             complement(696..1457)
                     /locus_tag="VLL95_15800"
                     /inference="COORDINATES: protein motif:HMM:NF014068.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019172 - glyoxalase III activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HSR40374.1"
                     /translation="MANVKEVNSYVHFHGAPSKGKILMVASSPSVSAQTGWPIGFWAA
                     ELTHPLHVFQEAGYEVELVSTEGGALQMDGYSNPTDASGYSAHDVISLGYMQQPWFND
                     MLAKTKKLTDVNPADYAAIFLVGGQGPMYTFRSNKDLEKLFVAFYEAGKPSAAVCHST
                     TLLLEAKKSNGELLVAGKTWTGFADAEEEFADQAVGMKIQPYRIETEAKKLSGTTFKV
                     AAPFSSYAIQDGNLITGQQQNSGAAAAELVVEALG"
     gene            1557..>1835
                     /locus_tag="VLL95_15805"
     CDS             1557..>1835
                     /locus_tag="VLL95_15805"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSR40375.1"
                     /translation="MRSLYLYPMPDVIINKQQFYNPVDYVLKKIGSTWKIPVLWRLKK
                     QARRYSELQKDIPHISQKMLTQTLKELEADGFISKQTFPEVPPRTEYSL"
BASE COUNT          431 a          494 c          453 g          457 t
ORIGIN      
        1 caaaaatcat ggcgaataaa tccgccaaca ttgtgtgtgg tggtgaagct ttctttcccg
       61 gtttggttca ggtccagcat caggccgccg ccccagcttt ggtacttaag gcccagtcga
      121 aaccgttgcg tcaggttcca caatttactg ccgggattgt atatgggaaa cagttcggcc
      181 tgtgccagga gtcgccacct cgcattcaat ggcggctgat accggaacaa cccgaacagg
      241 tccacattcc catttgattg caggtcggcc accagccatc cgaagaacag gaagtcgcct
      301 ttctgtttga aatactgcac acctgctttg ggtacaaatc cattgctgcc aaatgccccc
      361 acggccacga tacccaggcc gtttttgaaa ttgtagctca ccgcattgtt tgatccccag
      421 agcgattggt tcctgtagtt gaccgatgcc cttttgcgac tgaaaaacaa ccacggcgtc
      481 cggctggtat ccgccttccg gaaatacttg aaccacagga tatctacgcc ggcccgtttg
      541 ttgccgccgt atacctccac catttgagca accgacagct ggctgcacca caggaagaca
      601 atcatcaaca caattcgcat agcaggatca aaagccggca agatgttttc tgcccgcttt
      661 tgtagtgttg gttttgtatg aaaggcgggt agcatttatc ccagcgcctc cactaccaat
      721 tcagcagccg cagcgccgct gttttgctgc tgaccggtga tgaggttgcc atcctgtatg
      781 gcataagatg aaaacggagc ggctactttg aacgtggtac cactcaactt cttcgcttcg
      841 gtttcaatgc ggtacggctg gatcttcatg cccacggcct ggtcggcaaa ttcttcttcg
      901 gcatcggcaa agcctgtcca tgttttaccg gccaccagca attcgccatt gctctttttg
      961 gcttccagca gcagcgtagt gctgtggcat acggcagcgc tgggcttgcc ggcttcataa
     1021 aaagcaacga agagtttttc taaatcctta ttgctgcgga aagtgtacat gggtccctgg
     1081 ccgcctacca aaaaaatggc ggcatagtcg gcgggattta catcggtcag ttttttggtt
     1141 ttagccagca tgtcgttgaa ccatggctgc tgcatatagc ccagcgagat cacatcgtgg
     1201 gcactgtagc cgctggcatc agtcgggttg ctgtagccat ccatttgcag ggcgccacct
     1261 tccgtgctca ccagttccac ttcgtagccg gcttcctgga acacatgcaa agggtgggtc
     1321 aattcggccg cccaaaagcc gatgggccaa ccagtttgtg cggaaacact gggtgagctg
     1381 gctaccatca ggatcttgcc cttggaggga gcgccgtgaa aatgtacata gctgtttact
     1441 tcttttacgt ttgccattat catgattttt ttggttgaat aattggagac gtaaaattga
     1501 aaagcaggca ggcctaaacc atgtagtgca cgtattggtg tgcaacgcac tttttggtgc
     1561 gcagcctcta tctttacccc atgcctgatg tcatcatcaa caaacagcag ttctacaacc
     1621 cggtagacta cgtgctcaag aagattggca gcacctggaa gatcccggtg ctctggcgtt
     1681 tgaaaaaaca ggcccgccgt tacagcgaat tgcaaaagga tattccgcat atcagccaga
     1741 aaatgctgac ccaaaccctg aaggaactgg aagccgatgg gtttatatca aaacaaacct
     1801 ttcctgaagt gccgccgcgt actgaataca gcctt
//
LOCUS       DATIQF010000912         3734 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_29778, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000912 DATIQF010000000
VERSION     DATIQF010000912.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3734
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29778"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..396
                     /locus_tag="VLL95_15810"
     CDS             <1..396
                     /locus_tag="VLL95_15810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40376.1"
                     /translation="IGNLKRLDMLRTMPELKAKLWENATKLQEGLKARGFDIGKTDSV
                     VTPVYMKGGVEEATAMVMDLRENYGIFCSIVVYPVIPKGHIIYRLIPTASHSDEDIER
                     TLQAFSETKQKLDAGAYKVEAIPDMAEKA"
     gene            complement(640..1179)
                     /locus_tag="VLL95_15815"
     CDS             complement(640..1179)
                     /locus_tag="VLL95_15815"
                     /inference="COORDINATES: protein motif:HMM:NF024498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HSR40377.1"
                     /translation="MAKGSTFLTVLLAVSLLSLPVAGSYTSKNAGVQWMTPAETEAAM
                     NKETKAIIIDVYTTWCHYCKVMDATTWKDDSVAQYVKDHFYAMKLNAEENQSLTWNGK
                     VYEYLPRYKVNKLAVELLRGNMVYPSTVIIPEKGDWEIIPGAFKPADVEIVLKYYGSG
                     ANEKMDFATWQKQFHGQWR"
     gene            1217..1777
                     /locus_tag="VLL95_15820"
                     /pseudo
     CDS             1217..1777
                     /locus_tag="VLL95_15820"
                     /inference="COORDINATES: protein motif:HMM:NF014494.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0006725 - cellular aromatic compound
                     metabolic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
     gene            complement(1826..2467)
                     /locus_tag="VLL95_15825"
     CDS             complement(1826..2467)
                     /locus_tag="VLL95_15825"
                     /inference="COORDINATES: protein motif:HMM:NF015510.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA];
                     GO_process: GO:0044874 - lipoprotein localization to outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein carrier protein LolA"
                     /protein_id="HSR40378.1"
                     /translation="MKQFFTLCLAAICALPAFAQNDPAAKALLDKVSKKFKSLTTVQG
                     NYNLTVTNRAGKPAGKKSGQIFVKGTKYKLTEQSMQIFSDGKKIWKYEPAANEVSVSA
                     VDESNSGITPAKLFTNFYDKDFLYKLNGPVTVGGKKLQEIEMTPTDKRKSFFKVYLYI
                     DEAQSMIVSSKIYENSGNVYNYTISNLKTNQPMADNMFVFDKSKYPGVEEIAQ"
     gene            2624..>3734
                     /locus_tag="VLL95_15830"
     CDS             2624..>3734
                     /locus_tag="VLL95_15830"
                     /inference="COORDINATES: protein motif:HMM:NF028457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5117 domain-containing protein"
                     /protein_id="HSR40379.1"
                     /translation="MRIASILLLLLGTNFLQAQPLPTIEDKVKNMNSRLGFVPLYIDN
                     DAGKVFLEINQWNKEILYVTSLPAGLGSNDVGLDRGKLGEERIVKFERNGRKVLMVQP
                     NYGYRAQSNDAAERKAVEQSFAQSILWGFTMEAATADRVLVDATEFLLRDAVKVIPTL
                     RRANQGSYSLDKSRSVFYWPNTKNFPQNTEIETTITFTNSDGNTGAYVRSVTPSDEAI
                     TLRMHHSLVQLPDAGYKPRVFDARSSFIPTSFYDYSSPVSEPIEKFYAIRHRIEKKDK
                     KAAISESVKPIVYYLDNGTPEPIRSALLEGASWWNQAFEAAGFKNGFQVKLLPDTADP
                     RDVRYNMINWVHRSTRGWSYGSSVVDPRTGEIIKGN"
BASE COUNT          950 a          891 c          918 g          975 t
ORIGIN      
        1 attggtaacc tcaagcgcct cgacatgctg cgcaccatgc ccgagctcaa agccaagttg
       61 tgggaaaatg ccaccaaact gcaggaaggg ttgaaggccc gtggcttcga catcggcaaa
      121 accgattcag tggtaacccc ggtgtatatg aaaggtggcg ttgaagaagc tacagcgatg
      181 gtgatggacc ttcgcgagaa ctatggcatc ttctgttcca tagtggtgta cccggtgatc
      241 ccgaaaggtc atatcattta tcgccttatc cccaccgctt cccattctga tgaggatatt
      301 gagcgcacat tgcaggcatt ttctgaaacg aagcaaaagc tggatgccgg cgcctataag
      361 gttgaagcca tccctgacat ggccgaaaag gcgtaactca gaaactgccg aaagaataca
      421 aatgaacctt gcccttctcc ctggagaggg gcattttttt gtgggttata ttgttcgttg
      481 aggcaaacaa aaaagccccg cgttgcgggg cttcttaatc aaaaccatta accattaaac
      541 cttatcctat gaaaattcgg tactaatatc gggaaattgg tttaacaaaa gcaattttta
      601 tttggaccaa agttgaacaa ggtggaaaga tggctccctt taccgccact gaccgtgaaa
      661 ctgcttctgc caggtggcaa aatccatttt ttcattggcg ccactgccat aatacttcag
      721 cactatctcc acgtcggcgg gtttgaaggc acccggaata atttcccagt cgcctttttc
      781 gggaatgatg actgtggatg ggtacaccat attgccccgc agcaattcaa ccgccagttt
      841 gttcacctta tagcggggca ggtattcata cactttccca ttccaggtaa gcgattgatt
      901 ttcctccgca ttcagtttca tggcatagaa atgatccttc acgtattgtg ccaccgaatc
      961 atctttccag gtggtagcgt ccatcacttt gcaataatgg caccaggtag tgtacacatc
     1021 aatgattatg gccttggttt ccttgttcat agcggcttcg gtttcggcag gtgtcatcca
     1081 ttgcacaccg gcatttttgc tggtatagct acccgccacc ggcaatgaaa gcaggctgac
     1141 tgccaacaaa actgtgagga aagtggaacc ctttgccatg aagtggtgtt attttggcaa
     1201 atctaataca tgcatcatgc ataaaattgt tatagccgtt accggtgcca gtggatccat
     1261 ctatgccaaa gtgcttctag ataagctggt gcagctcaaa gcacaggtgg cagaaattgg
     1321 agtggtgttg tcatccaatg cagtggaagt atcgcgtcac gaactgggcg acgatgtatt
     1381 gctgagctac ccggtcaagt attacgataa aatggatttc atggcgccct ttgccagcgg
     1441 atcctgacag tacaataaga tggtcatcgt tccttgcagc atgggtactt tggggcgcat
     1501 tgcacacggc atcagcaatg acctggtcac ccgtgccgcc gatgtgatac tgaaggaaag
     1561 acgtcagctt attcttggcg ttcgcgatac cccttacaac ctggtgcaca tccgcaacat
     1621 ggaagcggtt acactggccg gtggcatcat atgtcctgcc acaccatcct tttacagcaa
     1681 acctgctacc attgaagaag tggccgccac tgtcaccgac cgcatgctcg acctgatggg
     1741 gctgaaacac caaacgtacc gttggggtgg gcaataaaaa agtctccggt tacggagact
     1801 tttttattgt attagatcag ctgccttatt gcgcaatttc ctctacgccg gggtatttgc
     1861 ttttgtcgaa cacaaacata ttgtcggcca taggttgatt ggtcttcagg ttggagatgg
     1921 tgtagttgta aacgttgcca ctgttttcat agatcttgct gcttacgatc atgctctggg
     1981 cttcgtcgat gtacaaatac actttgaaga aagacttgcg cttgtcggtt ggcgtcattt
     2041 ctatttcctg caatttcttg ccacccacag ttacaggtcc gttgagtttg tacaaaaagt
     2101 ctttgtcgta aaaattggtg aacagtttgg ctggtgtaat gccgctgtta ctttcatcca
     2161 cagcgcttac agaaacttcg ttggcagcag gttcgtattt ccagatcttt ttgccatcag
     2221 agaagatctg catgctttgt tccgtcagtt tatattttgt cccttttaca aaaatctgtc
     2281 ctgacttttt cccggcaggt ttgccagcac ggttggtaac ggtcaggttg taattgccct
     2341 gtacagtagt aagcgactta aacttcttgc tcactttgtc gagcagtgcc ttggcggcgg
     2401 gatcattttg tgcaaaggcg ggcaaagcac aaatggcagc caggcataat gtgaaaaatt
     2461 gcttcatgct tgattttttg aaggggccaa aggtaaatat tcgaacccat ccaaaagatc
     2521 cggtttaaag ggtatggcta ttttacagga tatttatcat tcgggctggc gggtttgccg
     2581 cacggcgtcc aatagataat cttatttatt caaccattag cttatgcgga tcgcttccat
     2641 tttactcctc ttgctgggga ccaatttttt acaggcacag cctttgccca ccattgaaga
     2701 caaggtaaag aacatgaaca gccggctggg ttttgtgccg ctttacatcg acaatgatgc
     2761 cgggaaggtt ttcctggaga tcaatcaatg gaacaaagaa atactttatg taacctcatt
     2821 gccagcaggg ctcggcagca atgacgtggg cctcgaccgg ggtaaactgg gagaggagcg
     2881 aatcgtaaag tttgagcgca atggccgcaa ggtgctgatg gtgcaaccca actatggcta
     2941 ccgggcgcag agcaatgatg ctgctgaaag aaaagcggtg gaacagtcat ttgcccaaag
     3001 catactgtgg ggctttacta tggaggcggc aacagccgac agggtgctgg tagatgccac
     3061 tgaattcctg ttgcgggacg cggtgaaggt gatccccacc ttgcgcaggg ccaaccaggg
     3121 cagctattct ttagacaagt cacgcagcgt tttctactgg cccaatacca aaaactttcc
     3181 gcagaataca gagattgaaa ccacgatcac atttacgaac agcgatggca ataccggggc
     3241 ctatgttcgc tcggtaacac cttctgatga agccatcaca ttgcgcatgc atcattcgct
     3301 ggtgcaattg cccgatgccg gctacaaacc acgagtattt gatgcccgca gcagttttat
     3361 tcccacttca ttttatgatt attcctcacc agtgagcgaa cccatcgaga agttttatgc
     3421 catccggcac cgcatcgaga aaaaagacaa aaaagctgcc ataagtgagt cggtcaagcc
     3481 aattgtgtac tacctcgaca atggcacccc tgagcccatt cgcagcgctt tgctggaagg
     3541 ggcatcgtgg tggaaccagg catttgaagc agctggcttt aaaaatggat tccaggtgaa
     3601 actgttaccg gatacagccg accccaggga tgtgcgctac aacatgatca actgggtgca
     3661 ccgcagcact cgaggctgga gctatggatc atcagtagtg gatccgagaa ccggtgagat
     3721 catcaagggc aatg
//
LOCUS       DATIQF010000913         3013 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_75259, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000913 DATIQF010000000
VERSION     DATIQF010000913.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3013
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75259"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2471
                     /locus_tag="VLL95_15835"
     CDS             <1..2471
                     /locus_tag="VLL95_15835"
                     /inference="COORDINATES: protein motif:HMM:NF038128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="choice-of-anchor J domain-containing protein"
                     /protein_id="HSR40380.1"
                     /translation="APFSISADGTTFGTNLSFTAAQMASAKTVYVRYSPTAAGQSAGT
                     ITHSSTGAEQRTVTVAGEGFDPASPGFSFNTCTVAGEPGSGFTQFSVTGAQLWNCTSF
                     GRNSTNGVQMNGFSGSALDNEDWLISPALNLGTGFNIPVLRFWSRTEFSGPAIQVMVS
                     TNYSGSGNPNAAAWTALPAILPVQASNTWTLTDNLDLSAYKIAGVYIAFKYTSSPAGG
                     AARWTLDDVSISSVDRLVQVTPASLSFSEQAVGGTSASQALQVVAKNVGDITLSVGSN
                     WQLSSDNNAFSSSINIAASNAASGATFYARYAPQTKVLRDTGRIRMQATSLDSNVAVM
                     LGTSFPRSQTLDIVGWNMMFFGSNSTNTATQPFKEQQKQNAKTVLNRLNADLIGFSEV
                     SSDSLMAVLMSEMPGYTTVTSPRWSYSFDPPDPNFPPQKVGFIYNSNALTLVNSRPMF
                     EAIYDAARGGSNTLPGYPTGTPSSFWASGRLPYMATFTANINGTTKTIRAVVIHGKSG
                     GSSAEDYNRRVYDAKVLKDSLDAYYANDNVIIVGDYNDDMLVSIFNNQASPYKPFADD
                     VANYNAITSGFSAAGKVSFLGSSSSMIDHHVISNDLSTFYLQGSAAVEDPRAYITNFT
                     STTSDHLPVYSRYALDQVLPVTMLRFQGWMEGNAARLNWETGSEQNSSHFVVERSSDG
                     SGFVQVGKVAAAGNSQRRNAYQFVQPNLAPGNYYYRLRQVDRDGKEVLTNVIALRYEN
                     TASIRVYPNPVKHSLSVSLPAGMKDAAWKIVAVDGRVMAAGQGTAENMVRSLQTKVPS
                     LNKGWYTLQVHSNLGMQVMKLVKE"
     gene            complement(2554..>3013)
                     /locus_tag="VLL95_15840"
     CDS             complement(2554..>3013)
                     /locus_tag="VLL95_15840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40381.1"
                     /translation="FAMKKNLLCIVLALLAFSMINAQDSATSANPDELYLKKKKTAKG
                     LIIGGGVSLGASLALGVVAMAQVTEEVFVSPWTDQNINENAGEGAAIASTVLFIGGAA
                     MLTAGLIINGNANRMKREGAVTINPGAPPLLLAGRSFGQHGLSLRVKLGR"
BASE COUNT          698 a          833 c          799 g          683 t
ORIGIN      
        1 cagcaccatt cagtatttca gccgatggca ccacttttgg caccaacctc agttttactg
       61 ctgcgcaaat ggccagcgct aaaacggttt acgttcgtta tagccccacc gccgccggtc
      121 agagcgccgg gaccattacg cacagcagca ccggtgccga acaacgcacg gttactgtag
      181 ccggtgaggg atttgatcct gcatcacccg gtttcagctt caatacctgt acggtggcgg
      241 gcgaaccggg cagcggtttc acccagttca gcgttacagg cgcccagttg tggaactgca
      301 ccagctttgg ccgcaacagc acgaatggcg ttcaaatgaa tggcttcagt ggtagcgccc
      361 ttgacaatga agactggctg atctcgccgg ccctcaacct gggaactgga ttcaatatcc
      421 ctgttttgcg tttctggagc cgtactgaat tcagcggacc ggcgatacag gtaatggtga
      481 gcaccaacta cagtggaagc ggcaatccga atgcggctgc atggacagcg ttgcctgcca
      541 tcctgccggt gcaggccagc aacacctgga cactcaccga caatctcgat ctgagcgctt
      601 acaaaattgc gggtgtgtac atcgctttca aatacacatc ttctcctgcc ggcggtgccg
      661 ccagatggac gctcgatgat gtcagcatca gcagcgtgga tcgcctggtc caggtgaccc
      721 ctgccagcct cagcttcagc gagcaggcgg tgggaggcac cagcgcctca caggcattgc
      781 aggtggtagc caagaatgta ggggatatca ccctcagcgt tggcagcaac tggcagctgt
      841 cttccgacaa caacgcattc agcagcagca tcaacatcgc cgcttccaac gccgcttcag
      901 gcgctacttt ctatgcccgc tatgcgccac aaaccaaagt gcttcgcgat accggccgca
      961 ttcgaatgca ggccaccagc ctcgacagta atgtggctgt tatgctgggt acgtcattcc
     1021 cccgttcgca aacacttgac attgtgggct ggaacatgat gttctttggc agcaacagca
     1081 ccaataccgc cacccagcct ttcaaggagc agcagaagca aaatgccaaa acggtgctca
     1141 accgactgaa tgctgatctg atcggctttt cagaagtgag cagcgattcg ctgatggcgg
     1201 tactgatgag tgaaatgcct ggttacacca ccgtcacatc accccgttgg tcctattctt
     1261 ttgatccccc ggatccaaac ttccccccgc aaaaggtggg cttcatttac aacagcaatg
     1321 cgcttacgct ggtgaacagc cggcccatgt ttgaagccat ttatgatgcg gcccgcggcg
     1381 gttccaacac attgccgggc tatcccaccg gtacgcccag cagtttctgg gccagtggcc
     1441 gattgcctta catggccact tttactgcca atatcaatgg tactaccaaa accatccggg
     1501 cggtggttat ccatggtaaa tcgggcggca gcagtgcgga agattacaac cgccgtgtgt
     1561 atgatgccaa agtgttgaaa gacagcctgg atgcttatta cgccaatgac aatgtgatca
     1621 ttgtaggcga ctataacgat gacatgctgg tgtccatttt caacaaccag gcatcgcctt
     1681 acaagccctt tgcagatgat gttgccaatt acaatgccat cacatccggc ttttctgctg
     1741 ccggcaaagt gagtttcctg ggcagcagtt ccagcatgat cgatcatcat gtgatcagca
     1801 atgatttgag caccttctac ctgcaaggca gtgctgctgt ggaagatccc cgtgcatata
     1861 taaccaactt caccagcacc accagcgatc accttccggt gtacagtcgc tatgcattgg
     1921 accaggtgtt gccggtgaca atgttgcgct tccagggctg gatggaaggc aatgccgcca
     1981 ggttgaactg ggaaaccggt tcagagcaaa acagcagcca ttttgttgta gaacggtctt
     2041 ctgacggtag tggctttgtg caggttggga aggtggcggc tgccggcaac agccagcgtc
     2101 gcaatgccta ccagtttgtg caacccaatc tggctccggg caattactac tatcgcctgc
     2161 ggcaggtgga tcgcgatgga aaggaagtgc tgaccaacgt gattgcattg aggtacgaga
     2221 acactgcctc tatcagggta tatcccaacc cggtgaagca ttcactcagc gtttctttac
     2281 ctgctggtat gaaggatgct gcctggaaaa ttgttgccgt agatggcagg gtgatggcag
     2341 ccgggcaggg tactgctgaa aacatggtgc ggtcgcttca gacaaaagtg ccatcgctca
     2401 acaaagggtg gtacacgttg caggtgcaca gcaaccttgg gatgcaggtc atgaaattgg
     2461 tgaaggaata acttccaaat gctcataata aagggcctgc tccattggag gcaggccctt
     2521 tattatgagg acaaatggtt cgctaaatga cgctcagcga cccagtttta cgcgtagcga
     2581 aagcccgtgc tgaccgaagc ttcgcccggc caaaagcagg ggaggcgcac cggggttgat
     2641 ggttacagcc ccttctcttt tcatgcggtt ggcatttcca ttgatgatga gcccggcggt
     2701 cagcatggcg gccccgccta tgaataagac ggtgctggct atagcggccc cttctcctgc
     2761 attttcattg atgttctggt ctgtccatgg cgacacaaag acctcctcgg tcacctgcgc
     2821 catggccacc acacccaaag ccaaactggc tcccaggcta acgcctcctc caatgatcag
     2881 gcctttggca gtctttttct ttttgagata taactcatcc gggttggcac tggtggctga
     2941 atcctgggcg tttatcatgg agaatgccag gagtgcaagg acaatacaaa gcaggttttt
     3001 tttcatggca aat
//
LOCUS       DATIQF010000914         8878 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_166550,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000914 DATIQF010000000
VERSION     DATIQF010000914.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8878
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166550"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1268
                     /locus_tag="VLL95_15845"
     CDS             <1..1268
                     /locus_tag="VLL95_15845"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSR40382.1"
                     /translation="DGLAINGIHNLTIDRRDNIWTIHRRQFSVLLAGTNRFFNVAMPI
                     ASPILNWPNNLVTLQNGNVVANNFNDIVEFFPERLLQKPVSRLPEISSLYINDMPRIF
                     APGKTLNLTSNENSLHFKFGILTNKIFFPYELQYRLQGAEANWQTAGIGSEAFYNKLP
                     PGKYTFKVRAVATNGSWASGEQSIELVIEKPIYQRFWFVLLLSMLIIGLLLVISRYRL
                     RKQRQVFELETKTAVLEREKATIQYDSLKQQLNPHFLFNSLTSLAGLIEADQQIAGDF
                     LQRMSDMYRYILKSGDQETVPLSDELRFVQLYIDIQQTRFGSGLAVRINVPEAYLNFR
                     IAPVTLQNLIENAIKHNVVDEGFPLVIDIGIADDYLVVSNNLQKKGVVETSNKKGLEQ
                     FVSLYGFLSEKPVVIEETADAFIIKIPLI"
     gene            1282..2052
                     /locus_tag="VLL95_15850"
     CDS             1282..2052
                     /locus_tag="VLL95_15850"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSR40383.1"
                     /translation="MKAVIIEDEAIIAKVLQNKIAKVAPDVEVVAILSSLRTARNWLS
                     ENAEPDLMLMDIQLSDGVSFDLFNSFALKCPVIFTTAYDEYAIRAFRVNGVDYLLKPV
                     KEVQLQEAIDKCRRWMEQKTQPPADMAELIRSLTNPSASSRYKEKFIVNIRNQWMPVN
                     TKDIACFSKEVLNYIYLFNGERLMIDYTTLEEVEDLLDPKQFYRANRQFIINIDAVHT
                     VKPVENSKLIIRLKEPNHKLEIDMSRLKSPEFKKWMDR"
     gene            complement(2183..3520)
                     /locus_tag="VLL95_15855"
     CDS             complement(2183..3520)
                     /locus_tag="VLL95_15855"
                     /inference="COORDINATES: protein motif:HMM:NF025253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber domain-containing protein"
                     /protein_id="HSR40384.1"
                     /translation="MNNRIILIGLLLASANGALTQNVGIGTTSPHATAMLHVEIGTSN
                     SQGLLVTGSTTNGAVPNLGGGSRLMFYPGKAAFRAGGVEGLQWNDSNTGIFSMATGRS
                     TVASGGIATAMGYYTIASGIKSTALGSFSTASGEASTAMGNYTIASGSASTAMGSSSN
                     ASGIGSTAMGFSTFAVGEYSTAMGYNTIASGNNSATLGYHTVAKAFGSMSVGVLNDDS
                     DNPGATTLPTDRIFQIGNGTLDRSNALTVLRSGNTGVGVLDPAYRLDLAGRVRIRSGG
                     TSGSTAGIWLNKNDNTGLIGFVGVDANNSIGFYASPAGWSLLVDANTGNTWVKGTVTA
                     NGVTLTSDERLKTDITPLGEAMPILEKLHGYQYHWKDASWDASLQTGLLAQEVEKVLP
                     ELVKTDDKGMKSVNYIGLIPYMLEAVNEQHSVITTQQKQIEELKKLVTELLKK"
     gene            3856..6873
                     /locus_tag="VLL95_15860"
     CDS             3856..6873
                     /locus_tag="VLL95_15860"
                     /inference="COORDINATES: protein motif:HMM:NF018305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HSR40385.1"
                     /translation="MRIAHSILFLLLIFGWASGQPSEFQFHPLDDKDGLGKEQVNRML
                     PDKNGGLWLATNNGLVFFDGNHASFFKHSSDSTSIINNSVQSVTQDLSGNIWGGTENG
                     VFCYDVAKRKFRNYTMPKVMERGVWDVICDKDGTVWINGWHGLARLKKNATGFDTVAF
                     YRATPQGPELLYMVRNSLLDDPSGEGIWMATRNGLRYFHKNSGRIDDAWSMPGHPLFT
                     HNRVAALSRTNDNRFWCFDFTTKTLICFDPKSRTVLQRISIAAAVPTARAFTLFESPD
                     GKLWLGLAQNEILVIDSRTGEILARPKASLADPYAIAGNTMVAAMKDSDGTLWLCTSG
                     GISKWYGKDARFRIHKLGADNELFQGNAEILHLAEDTTNGTWWMGTSDFKAIQYNPVT
                     AKGKVFDLMKLRPPGWKPETGTITYIRIFNGQVVICTSSGCYSLLPSGKIIPFQPLPK
                     EYDWFKPFDIVTSDNVNFYFGNGRQVIHYNQSTNKAVLLPNIQPRSQKFQPSTEYLTV
                     APNGSVWMTAGWGWLISYQADQLDSADLLGNRDMESHGYFTSLNVDPSGKVWITSYGV
                     GLYRYDPLTRKTKLFTSEDGLGIEHLAMAISDRYNNIWCGGRHQYSVRIAQTGVFYNF
                     SLPLYQQNASWYLKMILLKNGNIAAGAFQDIIEFFPDRLMRKPFPNVPLISGAEINGR
                     FRLLVHDSILQLSADENSLAVRYGLMTDNESYPYQFTWKMDNLYDSWQTPSDRAEAVF
                     NQLPPGRYVLQVKAVARNKTWESPVRSLIIIIEKRFYQTWWFRFLMGLLLAGLLYTVY
                     RYRLEKQKQILLLETKTESLEKEKAMIQYESLKQHLNPHFLFNSLTSLRSLIKTDSKT
                     AAWFLDGLSKVYRYVLKSADQELVLLKDEVAFVQTFAELQKIRFGEGLQVLITITPEA
                     GQRHIAPVVLQNLVENAIKHNTTSIESPLVIEIFTDDNRLYVRNNLQRYRVVETSNKQ
                     GLLSLKNLYSFYTDVPIDIEESAQHFTISIPLL"
     gene            6886..7656
                     /locus_tag="VLL95_15865"
     CDS             6886..7656
                     /locus_tag="VLL95_15865"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSR40386.1"
                     /translation="MKALIIEDEHLIAEEMKSMINAIAPDVEITAILPSVKAARKFLQ
                     SNAQPDLLFMDIKLSDGLSFELFDAVTISCPVIFCTAYEEYAIRAFKVNGVDYLLKPV
                     QEEDLRKAINKVKSLQQGGNAIPADIRQLMQYFTQAAPSRPQYKERFIISNNNKLIPV
                     EAKDIALIYRDTLNYFFRFDGDKLIYDYSPLEEIEEVLDPDMFFRANRQTIVNINAIQ
                     VLKPYGNQKLMVHLKPPLKMEIDVSREKAPLLRKWMDR"
     gene            complement(7721..>8878)
                     /locus_tag="VLL95_15870"
     CDS             complement(7721..>8878)
                     /locus_tag="VLL95_15870"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HSR40387.1"
                     /translation="SISGDMQLNAAAEREVMFDHVWRRTNDIFYKTGFHGINWEAMGK
                     DYRKFLPHIGNGYEFSELLSEILGELNVSHCGSSYGAPTNNPDLTASLGIFIDYQHKG
                     NGVKVAEVIAGGPLDKAGFNVAAGTVIESIDGESIAADKDLSQFLNRKAGKNVLLTLN
                     ENGKTRDLVVKPISMGEESQLLYKRWVRRNAEEVDKLSNGQLGYIHIPGMNDGAYRTA
                     IEEAMGKYAGRKALLVDTRNNGGGDLVADLAMWLSGKRFMEYSNDRETANYEPTFRWN
                     KPSISLANEANYSDGHCYSFAYQYLKIGKLVGMPVPGTCSFAGWEMLQDGQTRWGTVP
                     MGVRMMDGSGRYLENHQTEPDIKLMNEYDKVNKGKDQQLEAAVAELMKEIK"
BASE COUNT         2305 a         2211 c         2116 g         2246 t
ORIGIN      
        1 cggatgggtt ggcaataaac ggaatccata acctgacgat agaccggaga gacaatatct
       61 ggaccattca ccgccgtcaa ttttcggttc tactggcggg caccaatcgt tttttcaatg
      121 ttgccatgcc catagccagc cccattctca actggcccaa caacctggtt acactgcaaa
      181 atggaaatgt agttgccaat aacttcaatg acatcgttga gttcttccct gaaaggctgc
      241 tgcaaaagcc cgtgtctcgt ttgcccgaaa tcagttcgct gtacatcaac gatatgcccc
      301 gcattttcgc cccgggcaaa acgctgaacc tgacgtcgaa tgaaaacagc ctgcatttca
      361 agtttggcat actgaccaac aaaatctttt tcccctacga actgcaatac aggctgcaag
      421 gcgccgaagc caactggcaa acggccggta ttgggtcaga agcattttac aacaagttgc
      481 ctcccggcaa gtatactttc aaagtaagag cggtggccac caacggtagc tgggcatccg
      541 gtgagcagtc catcgaactg gtgatcgaaa aaccgattta ccagcggttc tggtttgtgt
      601 tgcttttgtc catgctcatc attggtctcc tgctcgtgat ttctcgttac aggctccgga
      661 agcaacgcca ggtatttgag ctggaaacca aaacagccgt gcttgaaagg gaaaaagcga
      721 ccattcaata cgatagcctg aaacagcaac tcaatccgca tttcctgttc aattcactca
      781 catcgctggc cgggcttata gaagccgacc aacaaatagc cggcgatttt ctgcagcgca
      841 tgagcgacat gtaccgttac atcctgaaaa gtggcgacca ggaaaccgtt cccctcagtg
      901 atgaattgcg ttttgtacaa ctctacatcg acatccagca aacccggttt ggcagcgggc
      961 tggcggtgcg catcaatgtg cccgaggcat acctcaattt ccggatcgcc ccggtgacct
     1021 tgcaaaatct cattgaaaac gctatcaagc acaacgtggt ggatgaaggc tttccgctgg
     1081 tgatcgacat cggcattgcc gacgattacc tggtggtcag caacaacctg cagaaaaaag
     1141 gcgtggtgga aacatccaat aaaaaaggac tcgaacagtt cgtaagcctc tatggctttc
     1201 tcagcgaaaa gcctgtagtc attgaggaaa cagcagatgc gtttatcatc aaaattccat
     1261 taatctaaaa attgcctgat catgaaagcg gtgatcattg aagatgaagc catcatagcc
     1321 aaagtgctgc agaataagat tgccaaagtg gcgcctgatg tagaggtggt ggccatatta
     1381 tcgagcctgc gcactgcacg aaactggctg agcgagaacg ccgaacccga cctgatgctg
     1441 atggacatcc agctgagcga tggtgtaagc ttcgacctgt tcaacagctt tgcgctgaag
     1501 tgcccggtta tttttaccac cgcctatgat gaatatgcca tccgggcttt cagggtgaat
     1561 ggcgttgact atttgctgaa gccggtaaag gaagtgcagt tgcaggaagc catcgacaag
     1621 tgcagaaggt ggatggagca gaaaacgcaa ccgcctgccg acatggccga gctcatccgg
     1681 tcgctcacca atccatccgc ttcgtccagg tacaaggaaa aattcatcgt aaacatccgc
     1741 aaccagtgga tgcctgtgaa taccaaggat attgcctgtt tcagcaaaga agtgctcaat
     1801 tacatctacc tcttcaacgg cgaacgactc atgattgatt ataccacgct ggaagaagtg
     1861 gaggatctcc tggaccccaa acagttttac cgggccaaca ggcagttcat catcaacatc
     1921 gatgccgtgc acaccgtgaa gccggtggaa aattcgaaac tgatcataag gttaaaagaa
     1981 cccaaccaca aactggaaat agacatgagc cgcctcaaga gccccgagtt caaaaagtgg
     2041 atggacagat gattgtcaat aacactgcac gttgtagcag ccaccggtct tccaattaaa
     2101 taaagaaatc tacatgctga tcactcaata acaaaacgcc tcctggaaag gaggcgcttg
     2161 attttggtaa atagggggtg tgttattttt tgagaagttc agtaaccagt tttttcaatt
     2221 cttcaatttg cttttgctgc gtggtgatta cggagtgttg ttcatttacc gcttccagca
     2281 tatacggtat aagccctatg tagtttacac tcttcatacc cttgtcgtca gtctttacca
     2341 attcaggcag cactttttct acctcctgtg ccagcaagcc ggtttgcagg ctggcatccc
     2401 acgatgcatc tttccagtgg tattggtagc catgcagttt ttccaatatg ggcatggcct
     2461 cacccagcgg tgtaatgtcg gttttgaggc gctcatcgct ggtgagtgta actccgttcg
     2521 cagtaacagt gccttttacc caggtgttgc ctgtgttggc atccaccaac aagctccaac
     2581 ccgcagggct ggcgtaaaat ccaatgctgt tgttggcatc aacacccaca aagcctatta
     2641 atccggtatt atcatttttg ttgagccaga taccggcagt actgccgctg gtacctccgc
     2701 tgcgaatccg cactcttccg gccaggtcga ggcggtaggc tggatcgagg acgccaactc
     2761 ctgtattgcc actgcgtagt acggtcaatg cattgcttcg gtcaagagta ccattgccta
     2821 tttggaaaat cctgtcagtt ggcaatgttg ttgctccggg attatctgaa tcatcgttta
     2881 aaaccccaac actcatactg ccaaatgctt tggctactgt atgataacct aaggttgcgg
     2941 aattatttcc actcgcaatg gtgttgtagc ccatagcggt ggaatactct ccaactgcaa
     3001 aagtgctgaa gcccatagct gtggaaccaa tcccagaggc attggatgaa gatcccatag
     3061 cagttgatgc tgacccactg gcaatggtgt aattgcccat agctgtggat gcttctccgg
     3121 aagcggtgga aaatgaaccc aaagctgttg acttaatccc actggcaatg gtgtaataac
     3181 ccatggcagt ggcaatgcca ccactggcca ctgtggatct gcctgtggcc attgaaaata
     3241 ttccagtgtt tgaatcgttc cattgtaagc cttccactcc acctgcccta aaggcagcct
     3301 tgcctgggta aaacatcagc ctactgccac cgcccaaatt agggacggct ccgttggttg
     3361 tcgagccggt taccagtagc ccttgcgagt tgctggtgcc tatctccaca tgcagcatgg
     3421 ctgttgcatg tggcgaagtc gtaccaatgc ctacattttg tgtcaatgcg ccgttggcgc
     3481 ttgccagtaa tagacctata aggatgatcc tgttattcat agcctttgaa gttgggtaat
     3541 gatatttgta aagcgaacct aaaaagtctt taatactggg cagcggcaat gaacccgaag
     3601 cgattattct gtgccttgaa gtgtatttat agctatctct tccggggcag gcttatcatc
     3661 cgttgacatc cctattgcag ttaaccctag cctgcaaacc ttgaaccatt gaagttttag
     3721 ccaaaatgct tgaataggct ctggcattga acaggtacgc ttcaacacag aaactccgca
     3781 cttggcacca cagaaaatac tgttcagaaa ttcaaccgga acaactcctt cggattgtac
     3841 ctaatttgcc tgcctgtgcg cattgcccat tctatattat ttctcctgtt gatctttggc
     3901 tgggcctcag gtcagccttc tgagtttcag ttccatccac ttgatgataa ggatgggctt
     3961 ggcaaagagc aagtcaacag gatgttgccc gacaagaatg gaggtttatg gctggccacc
     4021 aataacgggt tggttttctt tgatggcaat catgccagtt ttttcaagca ttcgtccgac
     4081 agcacctcca tcatcaacaa cagtgtgcaa tctgttaccc aggacctttc agggaatatt
     4141 tggggaggca ccgaaaatgg tgtattctgc tatgacgtag cgaagcggaa atttcgcaac
     4201 tacaccatgc cgaaggtgat ggaacgcggc gtgtgggatg tgatatgcga taaggatggc
     4261 accgtttgga taaatggctg gcacgggttg gcccgattga agaaaaatgc gaccggtttt
     4321 gataccgttg ccttttacag ggcaactccc caagggccgg agttgctgta tatggtgcga
     4381 aacagcctcc tggatgatcc gtctggcgaa ggcatttgga tggctacgcg aaacggactt
     4441 cggtatttcc ataaaaacag cggtcgcatc gatgatgcct ggagtatgcc tggtcacccc
     4501 ctgttcaccc acaacagggt cgctgcctta agtcgcacca acgacaaccg tttctggtgc
     4561 tttgatttca cgacaaaaac attgatctgt ttcgatccga aaagccgtac cgtattgcaa
     4621 cgcatttcaa ttgccgctgc ggtacctaca gcgagggcat tcaccctatt tgagtctccc
     4681 gatggaaagc tttggttggg attggctcaa aacgaaattc tggtcatcga cagccgaacc
     4741 ggggaaatac tggcaaggcc taaggccagc ctggccgatc cctatgccat tgccggcaac
     4801 accatggtgg cagccatgaa ggactccgat ggaaccctat ggctatgtac ttcaggtgga
     4861 attagcaaat ggtatggaaa agatgcccgg ttccggatcc acaagttggg agcggataat
     4921 gaactgttcc agggcaatgc ggaaatcctc catttggcag aggataccac caatgggaca
     4981 tggtggatgg gtacttctga ctttaaagcc attcaataca acccggtaac ggccaagggc
     5041 aaagtattcg atcttatgaa gctgcgaccg ccgggatgga agcctgaaac aggcaccatc
     5101 acctatatac gcattttcaa tggacaggtg gtgatttgta cttcttcagg ttgctattca
     5161 ttgcttccat cgggtaagat tattcccttt cagcctttac cgaaagagta cgattggttc
     5221 aaaccattcg acatcgtaac gagtgacaat gtgaactttt attttggaaa tggccggcaa
     5281 gtgatacact acaaccaatc aaccaacaaa gcggtcttac tgcccaatat ccaaccccgt
     5341 tctcaaaaat ttcaaccaag cacagaatac cttaccgtgg cacccaatgg ttcggtatgg
     5401 atgactgccg gctggggatg gttgataagc taccaagctg accaactgga ttcagcggac
     5461 ttgcttggca accgtgatat ggaatcccat ggctatttca cctctctgaa tgttgacccg
     5521 tcagggaaag tttggattac ttcttatggc gtgggactgt accggtacga tccgttaaca
     5581 aggaagacaa aattgtttac ttctgaagat gggcttggaa tagaacacct cgccatggct
     5641 atttcggatc gttacaacaa tatctggtgc ggaggccgcc accaatactc agtgcgcatt
     5701 gcgcaaacag gcgttttcta caatttcagt ttgcccctgt accagcaaaa tgccagctgg
     5761 tacctcaaaa tgattctgct caaaaatggc aatatagcag ccggtgcctt tcaggacatc
     5821 attgaatttt ttccggaccg gttgatgcga aagccatttc ccaatgtacc actcatcagc
     5881 ggcgcagaaa tcaacggacg ttttcgcttg ctggtacatg acagcatact tcagttgtcg
     5941 gccgatgaaa actctttggc agtgcgctat ggattaatga cggataatga gagctacccc
     6001 taccaattca cctggaaaat ggataatctg tacgacagtt ggcaaacacc cagtgatcgt
     6061 gctgaagcgg tattcaacca attgcctcca ggccgctatg ttttgcaggt aaaggcagta
     6121 gcccgcaata agacctggga gtctccggtc aggagtttaa taatcatcat cgaaaaacgc
     6181 ttttaccaaa cctggtggtt ccgctttctc atgggattgt tgttagcggg gttgttgtat
     6241 actgtttaca ggtatcgact ggaaaagcag aaacaaattt tgttgttgga aacaaaaacg
     6301 gagtcattgg aaaaagagaa agccatgatc cagtatgaaa gtttgaagca acacctcaat
     6361 ccacacttct tgttcaactc gcttacttct ttgcgcagtc taataaaaac cgatagcaaa
     6421 acagccgcct ggtttttaga tggccttagc aaagtgtacc gatatgtttt gaaaagcgct
     6481 gaccaggaat tggtactgct taaagacgaa gtagcatttg tacaaacctt tgctgaactg
     6541 caaaagatca gatttggaga aggtctgcag gtattgatca cgatcacgcc tgaagcaggg
     6601 caacgacaca tcgcaccggt agtactccaa aacctggtgg agaacgccat caaacacaac
     6661 accacatcca ttgaaagccc tttggtgatt gaaatattca ctgacgataa caggctgtat
     6721 gtaagaaaca acctgcagcg ctaccgtgtg gtggaaacca gtaacaaaca aggcctgttg
     6781 agcctgaaaa acctgtacag tttctacacg gatgtgccga ttgatattga agaatcagcc
     6841 caacatttta ccatcagcat tccactgctg taaatcttaa ttggtatgaa agcactgatc
     6901 attgaagacg agcacctgat tgcggaagaa atgaagagca tgataaatgc cattgcccct
     6961 gatgtggaga taacagcaat acttcccagc gtaaaggctg ccaggaaatt tctgcaaagc
     7021 aatgcccagc ctgacttgct ttttatggac atcaagctca gtgacggatt gagttttgaa
     7081 ttatttgatg cagtaaccat cagttgcccg gttatttttt gcacggctta tgaggaatac
     7141 gccattcggg ccttcaaggt gaatggagtt gactatctat tgaagcccgt gcaggaagaa
     7201 gacctgcgca aggctattaa caaggtgaaa tcactgcaac agggtggcaa tgctatccct
     7261 gccgacatca ggcaactgat gcaatacttt acgcaggccg caccttccag gccacagtac
     7321 aaagagcgat tcatcatcag caacaacaac aagctgatcc cggtagaagc caaagacatt
     7381 gcattgatct accgcgacac cctcaattac tttttccgct ttgatggcga caagctgata
     7441 tatgattatt cgccattgga agaaattgaa gaagtattgg atcccgatat gttcttccgg
     7501 gccaaccgcc agacgattgt caacataaat gccatccagg tactgaagcc ctatggcaac
     7561 cagaagctga tggtacacct gaagccgcca ctgaaaatgg agattgatgt gagccgggaa
     7621 aaagccccat tgctcaggaa atggatggac cgataacacc cttgatcaca gataaaaaaa
     7681 tacccaccag ttttggtggg tatttcgttt ttcacggtgc tcactttatt tctttcatca
     7741 actcagccac tgctgcttcc agctgctggt ctttgccttt gttcactttg tcgtactcgt
     7801 tcatcagctt gatatcgggc tcggtctgat ggttctcgag gtagcgaccg cttccatcca
     7861 tcatgcgtac gcccatgggt acggtgcccc aacgggtttg gccatcctgc agcatttccc
     7921 agccggcaaa tgaacaggta ccgggtacag gcatgcccac cagcttgcca attttgagat
     7981 attgataagc aaagctgtag caatggccgt cgctgtagtt ggcttcgttg gccaggctga
     8041 tgctgggctt gttccagcgg aaagtgggct catagttggc ggtttcgcgg tcgttgctgt
     8101 attccatgaa gcgcttgccg ctcagccaca tggccaggtc ggctaccagg tcgccgccgc
     8161 cattgttgcg ggtgtctacc aacaatgcct tgcggccggc gtacttgccc atagcttctt
     8221 caatggcggt acggtatgca ccatcattca tgccgggtat atggatgtag cccaactggc
     8281 cattgctcag cttgtctact tcctccgcgt tgcggcgtac ccaacgcttg tacagcagtt
     8341 ggctttcttc acccatgctg atgggcttca ccaccaggtc gcgggtcttg ccattctcat
     8401 tcagtgtcag cagtacattc ttgcccgcct tgcggttcag gaattgcgac aggtctttat
     8461 cagcggcaat gctttcgcca tcgatgcttt caatcacagt tcctgctgca acattgaaac
     8521 ctgctttgtc cagcggacca ccggcaatca cctctgccac tttcacgcca ttgcctttgt
     8581 gctggtagtc gatgaagatg cctaggctgg cagttaggtc gggattgttg gtgggcgccc
     8641 cgtatgacga tccgcagtgg ctcacgttga gctcgcccag tatttcactc agcagctcgc
     8701 tgaattcata cccattgcca atatgcggca ggaatttgcg gtagtcctta cccatggctt
     8761 cccagttgat accatggaat cctgttttgt aaaaaatatc attggtcctg cgccatacgt
     8821 gatcaaacat cacttcgcgt tcagcggccg cattcagttg catatcgccg ctgatgct
//
LOCUS       DATIQF010000915         1557 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_227542,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000915 DATIQF010000000
VERSION     DATIQF010000915.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227542"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1311
                     /locus_tag="VLL95_15875"
     CDS             <1..1311
                     /locus_tag="VLL95_15875"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HSR40388.1"
                     /translation="GVNSAGLSTGVVLDRSAVRWYQLNVNGNNLTLNQAGTLFSNGAT
                     QRSYWMGSIAGTGQGHAVVGATMAGPDDFANVAIAGRYGSTASGTLFAPVMATNFQEI
                     FNLQFKETVQRWGDYSQTVVDPSDDMTLWTFQQFTSGTDRWAVRATQLKAPPPAAVSS
                     MTSVTCTPNRIVDITLTGSVGNNFAGFFDPGADAGGPGFSRRLAVTSTGSVTISDLVF
                     VSPTQLNFKLNYAASSLGTNQTLTITNPDCQSVTWQYTLPSGCQPLPVAWLGINARWI
                     NSQGEITWKVGNERNVKLYEIERSNDGNNYSTIGRVNPAAAQGDNSYTFIDPQPGQEN
                     LYRIRQIDIDGKVAYSSVVALNKNAITKMSVQPNPASGPVRLLLPSEKGTLRLMDLKG
                     QSLLAVTTNSNTYFLETQTFARGVYIVEFTGANGKVETEKLILR"
BASE COUNT          386 a          391 c          399 g          381 t
ORIGIN      
        1 ggggtcaaca gtgccggcct ttcaaccggt gttgttcttg atcgttctgc agtcaggtgg
       61 tatcagttga atgtgaatgg aaataaccta actctcaacc aggctggtac cttgttcagc
      121 aatggtgcca cccagaggag ctattggatg ggaagtattg ccggcacggg tcaagggcac
      181 gctgttgtgg gcgctaccat ggcgggcccc gacgattttg ccaatgtggc aattgccggc
      241 cggtatggtt caacggccag tggcactctg tttgccccgg tgatggccac caacttccag
      301 gaaatcttca atctgcagtt taaagaaacg gtacaacgct ggggtgatta ttcacaaact
      361 gtagtagacc ccagtgatga catgacgcta tggaccttcc agcaatttac atccggcacc
      421 gatcggtggg cggtgagggc tacgcagctc aaagcgcctc ctcctgctgc agtcagttct
      481 atgacctcag ttacatgtac tcccaaccga attgtagata ttacccttac aggaagtgtt
      541 ggaaataatt tcgctggttt ctttgatccc ggtgcagatg cgggagggcc gggcttttct
      601 cggcggttgg cggttacttc caccggaagc gtgaccatct ccgacctggt ttttgtcagc
      661 ccgacacaac tcaatttcaa actcaattat gccgcatctt cgctgggcac caatcagacc
      721 cttaccatca ccaatcccga ttgtcaatcg gtgacatggc aatacacttt gccttcaggt
      781 tgtcagcctt tgccagtggc gtggttggga atcaatgcaa gatggatcaa cagccagggc
      841 gaaataacct ggaaagtagg caatgagcga aatgtgaagc tttatgaaat tgaacgcagc
      901 aatgatggaa acaactacag caccatcgga agggtgaatc cggcagctgc gcagggtgat
      961 aactcttaca cttttattga tccacaaccg ggccaggaaa acttataccg tatcaggcaa
     1021 atagacatcg atggtaaagt ggcttactct tctgtagtgg ccctgaataa aaatgcgatc
     1081 accaaaatgt ctgtgcaacc caacccggcc tcaggtcctg ttcggttgtt gttgccatca
     1141 gagaagggga ctttgcgttt aatggatttg aaaggacaat cgctgctggc tgtaaccacc
     1201 aattccaata cctatttcct cgagacacaa acctttgccc gtggtgtata cattgttgag
     1261 tttaccggcg ccaatggcaa ggtggagaca gagaagctga tcttgcgata gaacaccgtt
     1321 cgtagcccta cttaatacaa caaccctgca acaaacctgc agggttgttt atctttcgat
     1381 atcttttcaa cacacaaatt ttttgctatg cccatcagaa tggttgacga ccccaacgat
     1441 cctcaggaat tccaggacaa ttccggaggg ggcagacgaa gccccggagg cggtggtggc
     1501 ggaatgctga acctgctgcc gctgctgttc accctgtttc ggaaacccgg cggatgg
//
LOCUS       DATIQF010000916         4323 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_257806,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000916 DATIQF010000000
VERSION     DATIQF010000916.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4323
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257806"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..387
                     /locus_tag="VLL95_15880"
     CDS             <1..387
                     /locus_tag="VLL95_15880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40389.1"
                     /translation="PISAIYKNTAPESRSIWVMPGTYSVKLTVDGKSTTQPLKVRMDP
                     RVTMTPTELQKQHDLSLQCYEGIKQCQAWMAANMGNKEKLASVKRVHDNLARTMNLLQ
                     EADMPVTSQMEKAVKETVAQLAILKQ"
     gene            471..2810
                     /locus_tag="VLL95_15885"
     CDS             471..2810
                     /locus_tag="VLL95_15885"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40390.1"
                     /translation="MRKSILIAGAGMLCSLAMLAQPHSNHRSVSGTARLAAYKQHEAL
                     SQSSPYKTVQWRQTGPNYISGRVTDVWGLPGNKNIMYAAKATSGLWKTTDAGLTWQPL
                     FDRQPTLNMGAMAIAPSNPNILYVGTGEANIFRASLPGMGLFKSTDAGFSWQHLGLEN
                     TGTISRVVVHPNNPNVVYVAAGGNEWSYNPDRGVYQTTDGGKTWKKILYENEMSGCND
                     LIMDPNDPNTLYASMWNRVRKRWSDPIPEDGDHIYKTTDGGKTWKPLTNGLPDTKYTG
                     RIGLAMSAKNSNVLYAFVDNHTPKRDPKPGELDPYGRPIQIVPMGLQVWRSDDKGENW
                     RKVSTEDEKLERFAGTYGWVFSQIRVDPNDENTVYIMGVPFAKSTDGGKTFKTIITWG
                     KDYKGEQVHGDHHAMWIDPTNSNYIINGSDGGVAVSYDGSKTWKNFYHNLPTTHFYNV
                     TYDMKEPFNIYGSVQDQGSSMGSSAYTFDKASLQKIAWRDAPGGEGTHIAVDPVDKDI
                     MYASSFYGRLIKSDLSQPDSLWGRDIGIKKTDAEETLRGEWMAYTFISPHDHLTVYHG
                     FQYLYKSSDSGHTWKRISPDLTTNNKDRMGKTPYAINHQAITAADESPLQKGLLYVGT
                     DDGRVWISKDDGGNWTEIVKGLPANSHVSRLVASKYNKGTVYITLSDRREDNNKPYVY
                     VSTDYGTTWKSIAGNLPASPVNVVREDPKNANVLYCGTDMGVYVSRNKGVSWQSLRGN
                     LPASVSVQDLFVHPRDNKLVIGTYGRSVWILDEISFLQK"
     gene            2908..>4323
                     /locus_tag="VLL95_15890"
     CDS             2908..>4323
                     /locus_tag="VLL95_15890"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047420 - N-acyl-D-amino-acid deacylase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacylase"
                     /protein_id="HSR40391.1"
                     /translation="MKKILLFTSLALSSISFSQQADILIRNGRILDGTGNNWYYGDVA
                     ISQGKIVAMGKLAHYKAGKTIDAKGLYVAPGFIDVHTHIEGEEAKAPDASSFILDGVT
                     SVVTGNCGNSAADMGRYFPFIDSVRLSINVAALVGHNTVRREVMGTANRPPTPEEQQR
                     MQALVEKAMQQGAVGLSTGLIYVPGTYSQTPEVVGLAKAAAKYNGVYATHMRNEGDAI
                     AQAIEEALTIGRQASIPVEISHFKLSGQNNWGRSDETLGMVKRAREEGLEVTIDQYPY
                     TASSTSLSTLFPDEMLADGQDSIKARIDNPATRAYIKKYMLERLKKRKQKHFTYCQIA
                     SYRADSTWNGKNIEEVNLLLGRKHKAAYEADLIIDMMYKGGASMVFHGMGEEDVKNIM
                     QYPFNMFASDASIRVYKSGVPHPRGYGTNARVLGKYVREEKVITLEEAIRRMTSLPAQ
                     KFGFRDRGLLKEGMAADIVVFD"
BASE COUNT         1228 a         1096 c         1140 g          859 t
ORIGIN      
        1 cctatttccg ccatttacaa aaacacagcg cctgaatcca ggagcatttg ggtaatgccc
       61 ggaacttatt ctgtaaaact caccgttgac ggaaagagca ccacgcaacc cttgaaagtg
      121 cgcatggatc ccagggtgac catgacgcca acggaattgc aaaagcaaca tgatctgtcg
      181 ctgcaatgct acgaaggcat caaacaatgc caggcatgga tggctgccaa tatgggcaac
      241 aaggaaaagc tggcgagtgt gaaaagagta catgataatt tggctcgtac catgaacctg
      301 ctgcaagagg cagacatgcc tgtgaccagc caaatggaaa aggcggtgaa ggaaaccgtg
      361 gcacagttag ccattttgaa acaataacgg cgctttcaaa taagcagcct catcatcaag
      421 cagtcatcaa aaaaatatcg tctcattcct tagccattca atccactgat atgagaaaat
      481 ccattctaat tgcaggcgcc ggcatgctat gctcactggc aatgcttgca caaccccaca
      541 gcaatcatcg ctctgtaagc ggaacagccc ggctggccgc ctacaaacag cacgaagcct
      601 tgagtcaatc atcaccctat aaaaccgtac agtggcgcca aaccgggccc aactacatca
      661 gcggaagggt gacggatgtt tggggactgc cgggcaacaa aaacattatg tatgccgcga
      721 aagccaccag tggcctttgg aaaacaacgg atgccggcct cacctggcag cccttgttcg
      781 acaggcagcc gacgctgaac atgggcgcca tggccattgc ccccagcaac cccaatatcc
      841 tgtatgtggg tactggcgaa gccaatattt tcagggcatc gctgccgggc atgggcctgt
      901 tcaaaagcac ggacgctggt ttcagctggc aacacctcgg tttggaaaac accggtacca
      961 tttcacgagt agtggtgcat cccaacaacc ccaatgtggt gtatgtagcc gcagggggca
     1021 acgaatggag ttataatccc gatcgtggcg tgtaccaaac cactgatggt ggcaagacct
     1081 ggaaaaagat cttgtatgaa aatgaaatga gcggatgcaa tgatttgatc atggatccca
     1141 acgatccgaa tacattgtac gccagcatgt ggaaccgggt gcgcaaacgg tggagcgatc
     1201 ccattccgga agacggcgac catatttaca aaaccaccga tggcggcaaa acatggaagc
     1261 ctctcaccaa cggtttgccc gacacgaaat ataccggtcg cattggcctg gccatgagtg
     1321 cgaagaacag caacgtgctg tacgcttttg tcgacaacca cacgccaaag cgggatccca
     1381 aaccaggtga actcgatccc tatggccgcc ccatccagat cgtacccatg ggcttacagg
     1441 tttggcgcag tgatgacaaa ggtgaaaact ggcgaaaggt gagtactgag gatgaaaaac
     1501 tggaacgctt tgccggtacc tacggttggg tattttccca aatcagggta gatcccaatg
     1561 atgaaaacac ggtgtacatc atgggtgtgc cttttgccaa aagcaccgat ggtggcaaaa
     1621 cgttcaagac catcattacc tggggcaagg attacaaagg cgagcaagta catggcgacc
     1681 accatgccat gtggatagat cctaccaaca gcaattacat catcaacggc agcgatggcg
     1741 gcgtggcagt gagctacgat ggcagcaaaa cctggaagaa tttttaccac aacctgccta
     1801 ccacgcattt ctacaatgtg acctacgaca tgaaagaacc gttcaatatt tacggctccg
     1861 tacaggacca gggcagcagc atgggcagtt cggcttatac atttgataag gcctcactgc
     1921 aaaagatagc ctggcgtgat gctcccggag gcgaaggcac ccatattgca gtggatccgg
     1981 ttgataagga catcatgtat gccagtagtt tttacggccg tctcatcaag agcgacctga
     2041 gccagcccga cagtttgtgg ggccgcgata ttggcattaa gaaaacagac gccgaagaaa
     2101 ctttgcgtgg cgaatggatg gcatatacgt tcatctctcc gcatgatcat cttaccgtat
     2161 accacggctt ccagtatttg tacaaaagca gcgacagtgg tcatacctgg aaacgtattt
     2221 cacccgacct cactaccaac aacaaagaca ggatgggcaa aacaccgtat gccatcaacc
     2281 accaggcaat tactgcagcc gacgagagcc cgctgcaaaa aggattgctg tatgtgggca
     2341 ccgatgatgg ccgcgtatgg atcagcaagg atgatggtgg caactggacg gagatcgtga
     2401 aaggcctacc agccaattcg catgtatcgc gactggtggc cagcaaatac aacaaaggca
     2461 cggtgtacat cactttgagc gatcgccgcg aagacaacaa caagccctac gtttacgtga
     2521 gcaccgatta cggcaccacg tggaagagca tagccggtaa cctgcctgct tcacctgtga
     2581 acgtggtacg tgaagacccg aagaatgcca atgtattgta ttgcggcacc gacatgggtg
     2641 tgtatgtgag caggaacaaa ggcgtgagct ggcaaagcct gcgtggcaat ttgcctgctt
     2701 ccgtatcagt gcaggatttg tttgtgcatc cccgcgataa caaactggtg attggcacct
     2761 atggaagaag tgtgtggatc ctggatgaaa tcagcttctt acaaaaatga ttaagtgcga
     2821 aaccacagag acactcaaag gcacagagat gcacgacgtt gtgattcttc gtgtcgatgt
     2881 gtcgctgtgt ttcaaaaaat tattcccttg aaaaaaatcc ttcttttcac ttcgcttgcg
     2941 ttatcgtcaa tttcgttttc ccagcaagca gacattctta ttcgaaacgg ccgcatactc
     3001 gatggcaccg gcaacaactg gtattacggc gatgtagcca ttagccaggg aaaaatagtg
     3061 gccatgggaa aactggccca ctacaaagcc ggcaaaacca ttgacgccaa aggcttgtat
     3121 gtggcacccg gcttcataga tgtgcacacg catatagaag gcgaagaagc caaggcgcca
     3181 gatgccagca gttttattct tgatggcgtg accagcgtag tgaccggcaa ctgcggcaac
     3241 tcggctgccg acatggggcg ctatttcccg ttcatcgaca gcgtcaggtt atcgatcaac
     3301 gtagctgcgc tggtggggca caataccgtg cgccgcgaag tgatgggcac cgccaaccgg
     3361 ccgcccacgc cggaagaaca acagcgcatg caggcattgg tggaaaaggc catgcaacaa
     3421 ggagcagtag ggctcagcac tgggttgatc tatgtaccgg gcacctattc tcaaacaccg
     3481 gaagtagtgg gactggccaa agccgctgcc aaatacaacg gcgtgtatgc tacccacatg
     3541 cgcaatgaag gggatgcaat agcacaggcc atcgaagaag cattgaccat tggccggcag
     3601 gcaagtattc ctgtagaaat ttcccatttc aaactgagcg ggcagaataa ctggggcaga
     3661 agcgatgaaa cactgggcat ggtgaagcgg gcaagagagg aagggctgga agtcaccatc
     3721 gatcagtacc cctacacggc atcgagcact tcgctgtcaa cgctgttccc cgatgaaatg
     3781 ctggccgacg ggcaagattc gatcaaagca aggatcgaca acccggccac ccgggcatac
     3841 atcaaaaaat acatgctcga aagattgaag aaacgcaagc aaaaacattt cacctattgc
     3901 cagatcgcca gttaccgggc cgacagtacc tggaatggca agaacattga agaagtgaac
     3961 ctgctgctgg gccgcaaaca caaagccgct tatgaagccg acctcatcat cgacatgatg
     4021 tacaaaggcg gcgccagcat ggtgtttcat ggcatgggcg aggaagacgt gaagaacatc
     4081 atgcaatacc cgttcaacat gtttgccagc gatgccagca ttcgggtgta caaaagtggc
     4141 gtgccgcatc cgcgagggta tggcaccaat gcgagggtcc tgggcaagta tgtgcgggag
     4201 gaaaaagtga tcacgctgga agaagccatt cggcgcatga catcactgcc ggcgcaaaag
     4261 tttggtttca gagatcgtgg cctgttgaaa gaaggcatgg cggctgatat cgtggtgttt
     4321 gat
//
LOCUS       DATIQF010000917         2684 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_44707, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000917 DATIQF010000000
VERSION     DATIQF010000917.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2684
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44707"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2542
                     /locus_tag="VLL95_15895"
     CDS             <1..2542
                     /locus_tag="VLL95_15895"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HSR40392.1"
                     /translation="NGDKYPDIYVSNDFFERDYLYINQRNGTFKDELEQRIQHTSLSS
                     MGADIQDINNDGKQDIFTTDMLPGDDYRLKTNTSFEGYDVFDLKRRQGFYSQFTQNAL
                     QVNDGSGNFYETAFYSGVAASDWSWGALIFDGDNDGLSDVVVCNGIFRDVTDQDFIDF
                     FANDVMQRMVLTGKKEEVSTIINKMPSVPIPNSAFRNTGGLRFEDASKKWGLDKPSFS
                     NGAAYADLDNDGDLDLVINNVNQPASVYRNNSREKEKSAFIAFSLQYQTPNLFGIGSK
                     VKVFGNQQTIIRELYPSRGFQSSVEYKLTIGLGKTIPDSVQIIWPDSSITTLNKPAIN
                     TQHKVAYSPQTAKMYPPPAAETTLPLLQSIPHPFETHQEDKYVDFYFERNIPFMLSRQ
                     GPKAAVGDVNGDGLEDIFIGGAVQQPRQLYLQTKNGFGKMPNKDFETYTFTDVTVAFF
                     FDADKDGDLDLFTGGGGNYAAAGANSYQNAVYINDGTGAFALKPGAVPMNLTNCGAAV
                     PLDFDGDGFTDLFIGNRSEAQQYGIIPKSYLLRNNGNATFSDVTATAAPSFSTLGMIT
                     AAVWTDINGNGKKDLLVVGEWMQPRAFEWNNNHFTELTTGMETYRGWWQTCTAADLDK
                     DGDMDLVLGNLGENFYLRPDSANPAKLWVSDFDANGNIDKILSQHRAGKDYPVFMKRD
                     ITDQMPSLKANNLRHRDFASKTVQQLLDKKLGNTQPLEVNRAQSMIAWNDGKGRFTMA
                     ALPVQLQLSAVNTIAVTDINQDGMMDIIAAGNQIDMLPQFCSLDAGYGSVVINKGNRK
                     FDALLPSQSGLLIKGVVRDIQPLQVGKERLWLFLQNNNYPLLYRSSIQ"
BASE COUNT          718 a          723 c          644 g          599 t
ORIGIN      
        1 caatggcgac aagtacccgg acatttatgt atccaacgac ttttttgaaa gagactatct
       61 ctacatcaac cagcgcaatg gcacttttaa agacgaactg gaacagcgga tacaacatac
      121 gagcctttct tctatgggtg ccgatatcca ggacattaat aacgatggca agcaggacat
      181 cttcaccacc gatatgctgc ccggcgatga ctatcgcctc aaaaccaata cctcctttga
      241 aggctatgat gtatttgacc tgaaacgccg gcagggcttt tacagccagt tcacgcaaaa
      301 tgcattgcag gtaaatgatg gctccggcaa tttttatgaa accgcttttt acagcggcgt
      361 ggcagccagc gactggagct ggggcgcact gatctttgat ggagacaacg atggcctctc
      421 ggacgtggtg gtgtgcaacg gcattttccg ggacgtgacc gaccaggatt tcattgactt
      481 ttttgccaat gacgtgatgc agcgcatggt actcaccggc aaaaaagaag aagtcagcac
      541 catcatcaat aagatgcctt ccgtgcctat tcccaattcg gcatttcgca ataccggtgg
      601 tttgagattt gaggacgcca gcaaaaaatg gggcctcgac aaacccagct tttccaatgg
      661 cgcggcctat gccgacctcg acaatgacgg cgaccttgat ttggtgatca acaatgtgaa
      721 ccagccggcc agcgtgtacc gcaacaacag tcgtgaaaaa gaaaagtcag cgttcattgc
      781 cttttcactg caataccaaa cacccaacct atttggcatt ggctccaaag tgaaagtgtt
      841 tggcaaccag cagaccatca ttcgggagtt gtaccccagc cggggctttc agtcgtcagt
      901 agaatacaaa ctgaccatcg gcctgggaaa aacaatacct gattcggtac agatcatttg
      961 gcccgacagc agcatcacca cgctgaacaa acccgccatc aacacccagc acaaagtggc
     1021 gtacagtccg caaacggcaa aaatgtatcc gcctcctgcc gctgaaacta ccctgccttt
     1081 gctgcaatcc attccccacc ctttcgaaac gcaccaggaa gacaagtatg ttgattttta
     1141 ttttgaacgc aacattcctt tcatgctttc gaggcaagga cccaaagcgg ccgtgggcga
     1201 tgtgaatggc gatgggctcg aagacatttt catcggcggt gctgtacagc aaccccggca
     1261 gttgtacctg caaacgaaaa atggtttcgg gaaaatgccc aacaaagact ttgaaaccta
     1321 caccttcacc gatgtaacgg tggccttctt ttttgatgcc gataaagacg gcgaccttga
     1381 tttgttcact ggcggcggtg gcaactatgc tgccgccggg gccaacagct atcaaaacgc
     1441 tgtttacatt aacgatggta cgggtgcttt tgccctcaaa ccgggcgccg tacccatgaa
     1501 cctcaccaac tgtggcgctg ctgttccact cgattttgac ggtgatggct tcaccgacct
     1561 tttcatcggc aaccgcagtg aagcgcaaca gtatggcatc atccccaaaa gctacctgct
     1621 gcgcaataac ggcaatgcca ctttcagcga tgtgactgcg acagccgctc cttctttctc
     1681 aacgctgggc atgatcacag cggctgtgtg gaccgacatc aatggcaacg gcaaaaagga
     1741 tttgctggta gtgggcgaat ggatgcaacc aagggcattt gagtggaaca acaatcactt
     1801 caccgaattg accacgggaa tggaaaccta ccgcggatgg tggcaaacct gcaccgctgc
     1861 cgacctcgac aaggatggcg acatggacct ggtgctgggc aacctcggag agaattttta
     1921 tctgcggcct gactctgcca acccggcgaa actttgggtg agcgacttcg atgccaacgg
     1981 gaacatcgac aaaattctga gccagcacag ggcaggcaaa gactacccgg tatttatgaa
     2041 gcgggacatt accgaccaaa tgccatcgct gaaagccaac aacctccggc accgcgattt
     2101 tgcatccaaa acagtacaac aactgcttga taaaaaactg ggcaacaccc agccgctcga
     2161 agtgaatcgt gcacaatcaa tgattgcctg gaatgacggc aaaggacgct tcaccatggc
     2221 tgcgttgcct gtgcaactgc aattgtcggc tgtcaatacc attgccgtca ccgatatcaa
     2281 ccaggatggc atgatggata tcattgccgc aggcaaccaa atagatatgc tgccacaatt
     2341 ctgcagcctc gatgccggct atggcagcgt ggtcatcaac aagggcaaca gaaaatttga
     2401 tgcgctgctg ccctcgcaat ccggcttact catcaaaggt gttgttcgcg acattcagcc
     2461 tttgcaggtt ggcaaggagc ggctgtggct tttcctgcaa aacaacaatt acccgctgct
     2521 gtaccgatct tctatccaat aatccaatta ctgcagacga aggaaatgtg atgctgactt
     2581 tatgatcatg aaacaggctc cccgacatat taccccactg ttcttgctgc tgctggcaat
     2641 tgccttgcat ggttgcagta aaaagcaaac cgcggatttt gtgt
//
LOCUS       DATIQF010000918         1591 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_151676,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000918 DATIQF010000000
VERSION     DATIQF010000918.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151676"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..640)
                     /locus_tag="VLL95_15900"
     CDS             complement(<1..640)
                     /locus_tag="VLL95_15900"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSR40393.1"
                     /translation="MGKSLKGLESRSSILASARKLLNESGLGQTMEMVATSMGLSRGR
                     ITHFFPTKDSLMVGIMRDYEHELGEMIHGFDLGKGPDFANTIAILDKVLDLQFEFRCA
                     LLYLATIGKNQVELHQHIEGSFFNRVDSIRMRTSFMVAEKWLDPAILEKYNWEVYCFQ
                     YTNLLTTWVISQEMYYSKQPLSKMKPVYIEATMNLYLPYLTSTGKKEYLKAMN"
     gene            792..>1591
                     /locus_tag="VLL95_15905"
     CDS             792..>1591
                     /locus_tag="VLL95_15905"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HSR40394.1"
                     /translation="MKSKLIVLLMPVSLYLTAQPSKTSAPATAEKPNILVIMPDDVGY
                     WNVGAYSHGMMVPTPNIDRIGTEGILFTDHYAAPSCTAGRAMFITGQLPIRTGLTTVG
                     MAGSPIGLSAKDPTLAEVLKPLGYKTGQFGKNHLGDRNEHLPTVHGFDEFYGNLYHLN
                     TEEEPSLAAWPKDPGFNNRYKPRGVLDCVATGTDDPTVDARFGKVGKQRIKDTGPLDP
                     KRMETVDEEFLSRTIDFMERSKKEGKPFFAWFNPSRMHIYTHLKPESR"
BASE COUNT          414 a          416 c          371 g          390 t
ORIGIN      
        1 cgttcattgc tttcaggtat tcctttttgc cggtgctggt gagatagggc aggtacaaat
       61 tcatggttgc ctcaatatat accggcttca ttttgctaag tggctgcttg ctgtaataca
      121 tttcctggct gataacccag gtagtgagca aattggtata ctgaaaacag tacacctccc
      181 agttatactt ttcgaggatg gcagggtcca gccatttttc agccaccata aagctggtgc
      241 gcatccttat gctatccacc cggttaaaaa atgatccttc aatatgctgg tgcaattcca
      301 cctggttttt tccaatggtg gccaggtaca ataaggcaca tcgaaattca aactgcaagt
      361 cgagcacctt gtcaagaatg gcgatggtgt tggcaaaatc gggacccttg cccaaatcga
      421 acccatggat catttcaccc aactcatgct cataatcacg catgatgcct accatcaggc
      481 tgtctttggt ggggaaaaaa tgggtgatcc ttccccggct gagccccata gacgttgcga
      541 ccatttccat ggtttgaccg agcccacttt cgttcagcag ttttcgggca ctggccagga
      601 tgctgcttct cgattcaagt ccttttaaag atttacccat caaaaaaaca aaatgtttgt
      661 ttgcgttgtt aaattaatag atttatagac gcaacctcag gaaagggccg aagcaggatt
      721 gtgctaatcg gcttttgcca gttcaggagg cacgtcacca ttctatcatt ttcatccaaa
      781 aaactaccca catgaaatcg aagctaatcg tattgctgat gccggtttca ctgtatttga
      841 cggcccagcc atcaaaaaca tccgcaccgg caacagcaga aaaacccaat atcctcgtca
      901 tcatgcccga tgatgtaggg tattggaatg taggcgccta cagccacggc atgatggtgc
      961 ctacgcccaa cattgaccgc attggcaccg agggcatcct tttcaccgac cattatgcgg
     1021 ccccatcctg cactgcaggc agggccatgt tcatcacggg ccaactgccc atccgcaccg
     1081 ggcttaccac ggtaggcatg gcgggttcgc ccattggcct gagtgccaag gatccaactt
     1141 tggcagaagt gctgaaacca ttgggttata aaaccgggca gttcggtaaa aaccatttgg
     1201 gcgatcgaaa tgaacatttg cccactgtgc atggcttcga tgaattttat ggcaacctct
     1261 accatttgaa tacggaagaa gagccctcgc tggcagcctg gcccaaagac ccgggtttca
     1321 acaatcgtta caaaccccgt ggcgtactcg attgtgtggc aaccggtacc gatgatccca
     1381 cagtggatgc acgctttggc aaggtgggca agcagcgcat caaagacaca ggcccgttgg
     1441 atcccaaacg catggaaacg gtagatgaag agttcctgtc acgcaccatc gatttcatgg
     1501 agcgcagcaa aaaagagggc aagcccttct ttgcctggtt caatccttca cgcatgcata
     1561 tctacactca cctgaagccg gaaagcagga a
//
LOCUS       DATIQF010000919         8550 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_44739, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000919 DATIQF010000000
VERSION     DATIQF010000919.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 8550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8550
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44739"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..199
                     /locus_tag="VLL95_15910"
     CDS             <1..199
                     /locus_tag="VLL95_15910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40395.1"
                     /translation="HKSQDIARIDAAMAKMNEAWTATSQEIYNAMNQQGGAQPGADAG
                     AQQSGGQSGETVTDAEFEEVK"
     gene            353..1672
                     /locus_tag="VLL95_15915"
     CDS             353..1672
                     /locus_tag="VLL95_15915"
                     /inference="COORDINATES: protein motif:HMM:NF013300.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004560 - alpha-L-fucosidase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HSR40396.1"
                     /translation="MKIMTRLAGGVLSLLLAANTMAQANDKLDWFRDAKLGIFIHWGI
                     YSVDGVDESWSFHNKKMSYPAYMAQLKGFTARNYKPDEWAALIKESGAQYTVITTKHH
                     DGAALYDSKVSQLDVVNATPAKRDLLTPFFKAIRQQGLKAGAYFSLIDWSRDDYPGFL
                     KDSNRYEVKNDTARWNHFIQFCHAQINEVMDNWNPDLVWFDGDWEHSDAEWNAPLIRK
                     NILDRNPHAIINARLRGYGDYATPEQHIPVSKPTGDVWELCMTSNQNWGYHPDDTAYK
                     TPYELISIFADVISNGGNLLFDIGPREDGWIPAEQVHLLNELGRWNKKHYEAIFGTRA
                     GLPYGHFYGPSTLSKDSSTLYLFMPSNAAGKAVIKGLKNEIESVEVVGSGTNLHHKVV
                     GKISWSTVPGIVYLDDIPADSRDEYMTVLKLKLKGKLSLYRGHGGFN"
     gene            complement(1745..2788)
                     /locus_tag="VLL95_15920"
     CDS             complement(1745..2788)
                     /locus_tag="VLL95_15920"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HSR40397.1"
                     /translation="MANPKVRILSLDGGGIRGIIPATIMVEIENRLQQRTNNPDARIA
                     DFVDLVAGTSTGGILTGIYLCPGENGRPKFTASEALNLYLKNGKEIFQMEFLSKVAKL
                     YVVFNEMYPKDSIEKLLDQYFGNAELDDLLKPCLITAYDIRNRRAHFFNSVDARKKNI
                     YNYKLKDVCRSTSAAPTYFEPAKIESLQGADYTLVDGGVFVNNPALAAYSEARTIRFS
                     QEVAQHKPDFPTAKDMLIVSIGTGTVKTAYHYDKIKNAGLIAWLPIVIDIMMSGNSET
                     VDYHLQKMFNTLSEEDEKDYYRLEPSLQDASSEMDDVTEENLKNLHEAGLHFVAKNDK
                     LIEEIVDKLIAYA"
     gene            complement(2912..3391)
                     /gene="rnhA"
                     /locus_tag="VLL95_15925"
     CDS             complement(2912..3391)
                     /gene="rnhA"
                     /locus_tag="VLL95_15925"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: protein motif:HMM:NF001236.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HSR40398.1"
                     /translation="MSTPFQPQVIIYTDGSSRGNPGPGGYGVVLMAGQHRKEMSEGFR
                     LTTNNRMELMAVIKGLEALKKPGLRVVVYSDSQYVVNAVEKGWLQGWLRTNFKGGKKN
                     PDLWVRFHNIYKQHHVRFVWVKGHADNAYNNRCDELATAAADGHHLHIDGWFEANRD"
     gene            complement(3571..5427)
                     /gene="hscA"
                     /locus_tag="VLL95_15930"
     CDS             complement(3571..5427)
                     /gene="hscA"
                     /locus_tag="VLL95_15930"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF003520.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HSR40399.1"
                     /translation="MAKIGINIATGSLQQEEMIVGIDLGTTNSLVAIIHPESGKPVAL
                     KEHDSSSLVPSVVHFDEFGNASVGEQAKAFLETEPQNTIFSAKRLMGKSYNDIRDHAD
                     FFTYKVIDDDTERLVKVQVGNRFYSPIELSSFILKELKNRAEHILKTPVSKAVITVPA
                     YFNDAQRQATRDAGKLAGLDVLRIVNEPTAASLAYGLGIDPSEEKTIAVYDLGGGTFD
                     ISILRINHGVFEVLSTNGDTYLGGDDFDRAILSHWAESAGIGMEELKANKSLLQQLRL
                     AAEKAKKHLSSNDAFEIDLNGDVLSLTKEKFESLIAPLIKRTIDCCTNALKDAGLNAS
                     DIQEVVMVGGSTRVPAVKQAVSEFFGRPVHDEVNPDEVVALGAAVQADIMAGKNKDVL
                     LLDVTPLSLGIETMGGLMDVLIPRNSKIPTSAGRQYTTQKDGQSGMRISVFQGERDLV
                     MHNRKLAEFNLTGIPAMPAGLPKVEIRFLINADGILQVRAKELRSGIETEIQVQPQYG
                     LTDEEVERMLLESITHAKDDIATRALVEARTEGEQLLETTERFITKNASYLTGEELTN
                     TASAMQALQLALTMDNKDLIQTKIEELNEISRPYAERIMDLAISQTMKGKQV"
     gene            complement(5541..6620)
                     /locus_tag="VLL95_15935"
     CDS             complement(5541..6620)
                     /locus_tag="VLL95_15935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40400.1"
                     /translation="MLLVWAATHTLLVWQYGIINSQEAQAYEGVARDWLAGRFEHIGI
                     QFVFYAGYIALRVLQLALHLPNAAVYVMHLLLSLAAAYSFGALLYAYSRSTKHASAAI
                     LLYITCPVVAVWNNFLYTDIIFCYLLTIGLYLLSRHNATSQNKIWFWIILLTIPFFRP
                     VGFLFAVTCMVFWLLMRSPVKVKAWIGASFVLLLALIGVPYVFDHAKDFYYPNHNAEA
                     NIICGLPSHLSQSISTPYDPQKGILHFFWSNPETSIRLFAWRLWKMVWLTRPYFSFAH
                     NAFLVAQMLLYYSLAIRGIWLLAKANRRLLLFILLSLGIWLAPGLFFCADWANRFVLP
                     AFVFILWLAAIGISGKWLNRGASPQ"
     gene            complement(6664..>8550)
                     /locus_tag="VLL95_15940"
     CDS             complement(6664..>8550)
                     /locus_tag="VLL95_15940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40401.1"
                     /translation="CVGHSMVFNVFDPITFKPWRNHPGGAFGSAISCDLANLTRQYNF
                     EWDDRVQANRKLMMDFMDAIPDGHYVLVRKVLDAPYENETYAPQLKADEQSFGTGNSL
                     YHRLKNAGFAAIDSFNKPSTYIFLYKKNDKNFTPVWRMNENVFGKLQMNENCPTPDSL
                     GFITSPIFGPAKEWKQVMWRGARAEQKAGDIPSVDVIGVNAAGNETFLRTLSESQQDA
                     DISNISVVQYPYLRLKMRNVDTANGTPYQLRWWRIHYTPVPEGALAPNVLLQSKDTFE
                     LGEPLEFRIAFKNVSRVAFDSLRLKAFVIDRNNITRPVTLARKKPLTPGDTTTLIVSL
                     ATKDFPGVNTLYLAANPDNDQPEQHFFNNFLYKTFYVREDKVNPLLDVTFDGVRILNK
                     DIVSAKPHIQIKLTDESRFLALNDTAGVTIQLKFPGENNPRKYRWGTDTLQFTPANLG
                     SGDNSALVDFYPELNKDAAAGSEYELTVAGRDRNGNKAGNIDYRITFQVMNKPMISNL
                     LNYPNPFSTSTAFVFTITGSEVPQEFKIQVMTVTGRIVKEITRQELGPLHIGTNITEY
                     KWDGTDMYGQKLANGVYLYRVITSLDGNPIEKLKLNEGYNQDSMDMTDKFFNKGYGKM
                     VILR"
BASE COUNT         2126 a         2003 c         2182 g         2239 t
ORIGIN      
        1 gcacaagagc caggacattg cccgcattga cgctgcaatg gcgaaaatga atgaggcatg
       61 gactgcaacc agccaggaaa tttacaacgc catgaaccag cagggcggtg cacagcctgg
      121 tgctgatgcc ggcgctcaac agagcggtgg acaaagcggc gagactgtaa ccgatgctga
      181 gtttgaggaa gtgaaataag cattcatcct aatagttgaa aattcgaaag ctgccccggt
      241 gacggggcag ctttcttttt agtgtaacgg catgctggtt cctgtgtgct gttgttcagg
      301 caatgcaaac atttaggccg tacatttcat gctgcaaaag aaaaatggct gtatgaaaat
      361 catgacccga cttgcaggtg gcgttctttc ccttttgctg gcggccaata caatggcgca
      421 ggccaatgac aaactggatt ggtttcgaga tgccaaactg ggcatcttca ttcattgggg
      481 gatttattca gttgatggag tggatgaaag ctggagtttt cacaacaaga agatgagcta
      541 tcccgcttac atggcacaat tgaaaggatt cactgccagg aattacaaac cggatgaatg
      601 ggctgctctt ataaaggaaa gcggtgcgca gtatactgtc atcactacca aacatcacga
      661 tggggcggcg ctgtacgaca gcaaagtgag ccaactggat gtggtgaatg caacacctgc
      721 aaaaagagat ttgctgacgc catttttcaa agccatccgc caacaaggat tgaaagcagg
      781 ggcatatttt tcattgatcg actggagtcg tgatgattat cccggttttc tgaaagacag
      841 caaccggtac gaggtcaaaa atgacacggc acgttggaat catttcattc aattctgcca
      901 tgcacagatc aatgaagtga tggacaactg gaatcccgac ctggtgtggt ttgatggcga
      961 ctgggagcac agcgatgccg aatggaatgc gccattgatc aggaagaaca ttcttgatcg
     1021 caatccccat gccattatca acgccaggct caggggctat ggtgactatg ctacgcctga
     1081 gcagcacatc cctgtcagca agcccaccgg cgatgtgtgg gaactttgca tgaccagcaa
     1141 tcaaaactgg ggctatcatc ctgatgatac ggcttataaa acgccatatg aattgatctc
     1201 catttttgcg gatgtgatca gcaacggagg caatctcttg tttgatattg gccctcggga
     1261 agatggctgg atacctgctg aacaggtgca cttgttgaat gagttgggca ggtggaacaa
     1321 aaagcactat gaagccattt ttggtaccag ggctggtttg ccctacgggc atttttatgg
     1381 cccttccaca ttgtcgaaag attcatccac cctttatttg tttatgccat ctaatgcagc
     1441 aggcaaagct gtgatcaaag gattgaagaa tgagatagag tccgttgaag tagtaggcag
     1501 cggcacaaat ctccaccaca aagtggtcgg caaaatttca tggagcactg tgcctggcat
     1561 cgtgtacctt gatgatattc ctgctgacag ccgcgacgag tacatgactg tattgaaact
     1621 gaagttgaag ggaaaactca gcctgtaccg cggccacggc gggttcaatt agctggtgcg
     1681 attgttgtac aaataaaaag accaaccgag cagtttggtc tttttattct ttgagcattt
     1741 gccatcatgc ataggcaatc aacttgtcta caatctcttc aatcagcttg tcatttttag
     1801 ccacgaagtg taagccggct tcgtgcaggt tcttcaggtt ttcttcagtc acgtcgtcca
     1861 tttcgctgct ggcatcctgc agcgaaggtt caaggcggta gtagtctttt tcatcttctt
     1921 cactgagcgt gttgaacatt ttttgcagat ggtagtctac ggtttcactg ttgccgctca
     1981 tcatgatgtc gatcacaata ggcagccagg caatcagtcc ggcattttta attttgtcat
     2041 agtgataagc cgtttttact gtgccggtgc caatggaaac aatgagcatg tctttggcag
     2101 tagggaagtc tggtttgtgt tgggctactt cctggctgaa tcgaatggtg cgtgcttcgc
     2161 tgtaggcagc caaagcagga ttgtttacaa acacgccacc atccaccagc gtataatctg
     2221 ctccctgtaa tgattctatt tttgccggtt cgaaataggt aggcgctgcc gaggtggacc
     2281 ggcacacatc tttcagtttg tagttgtaaa tgtttttctt tcttgcatcc acgctgttga
     2341 agaaatgggc cctgcgattg cgaatgtcat aagcagtaat gaggcagggt ttcaagaggt
     2401 catccaattc agcattgccg aaatattggt cgagcaattt ttcaatggag tctttcggat
     2461 acatttcgtt gaaaacaaca tacagtttcg ccactttgct caggaactcc atttggaaaa
     2521 tttccttgcc gtttttcagg taaaggttca gggcttcaga agcagtgaac tttggacgtc
     2581 cattttctcc cgggcacaaa tagataccgg tgagaatgcc gccggtactg gtacctgcca
     2641 ccaggtcaac aaaatcggca atgcgtgcat cgggattatt ggttcgttgt tgcaggcggt
     2701 tttcaatttc aaccatgatg gtggccggga tgatgccgcg gatacccccg ccatcgagtg
     2761 agaggatgcg gacttttggg tttgccatag tgtagtaagt gtttgtttcc tacaagatac
     2821 aagacactac tggaaatgtg aagcggaaag gaaatggggg aaataaggaa taaggaatga
     2881 tgaatgagtg ggagggagga attctcctca cttaatcacg gttggcttca aaccatccat
     2941 cgatgtgcaa gtggtggccg tcggcggcgg cggtggccaa ttcgtcgcat cggttgttgt
     3001 aagcattgtc agcatgccct tttacccata caaaacgtac gtggtgttgc ttatagatgt
     3061 tgtgaaagcg aacccagagg tccgggttct ttttaccgcc tttgaaattg gtgcgcagcc
     3121 atccctgcag ccatcctttt tccaccgcat tcaccacgta ttgactgtcg ctgtatacca
     3181 ctacacgaag tcccggtttt ttcagcgcct ccaggccttt gatcacagcc atcagctcca
     3241 tgcggttgtt ggtggtgagc cggaagcctt cactcatttc cttgcgatgc tgacccgcca
     3301 tgagcactac cccatacccc cccgggcctg gattgccacg gctgctgcca tcggtataaa
     3361 taatgacttg gggctgaaag ggagtagaca caattgttgt ttgaggcggc taatgtaggc
     3421 ctgtatgaga aataaggaat aagaaatgaa gaataaggaa taagaataac ggcatctgag
     3481 cagtcgtaac acggtactta attaagcacc aattatacga accaggattc aagcagctaa
     3541 ccaaaaacga aaaaccaaaa acgaaaaata ttaaacctgc ttccccttca tggtttggct
     3601 gatggcgagg tccatgatcc gctccgcata cgggcggctg atctcgttca actcttcaat
     3661 tttggtttgg atcaggtctt tgttatccat ggtaagtgcc agttgcaaag cctgcatggc
     3721 agatgcggta ttggtaagtt cttccccagt gaggtagctg gcatttttgg taatgaaacg
     3781 ttcagtggtt tccaatagct gctcgccttc ggtccgggct tctaccaatg ctctcgtggc
     3841 aatatcatct ttggcatgcg taatgctttc gagcagcatg cgttctactt cttcatctgt
     3901 gaggccgtac tgcggttgca cctgtatttc ggtttcaatg ccactgcgca gttctttggc
     3961 ccgcacctgc aaaatgccat cggcattgat aagaaaacgg atctccactt tgggcaagcc
     4021 ggctggcatg gccggaatgc cggtgaggtt gaactctgcc agtttccggt tgtgcatcac
     4081 caggtcacgt tcgccctgga atacgctgat gcgcatgccg ctttgcccgt ccttttgcgt
     4141 agtgtactgc ctgcctgcgc tggtggggat tttggagttt cgtggaatga gtacatccat
     4201 cagtccgccc atggtttcaa tgccaaggct taacggcgtt acgtccagca gcagcacatc
     4261 tttgtttttg cctgccatga tgtctgcttg aacagcagca cctaacgcta ccacttcatc
     4321 aggattcact tcatcatgca cggggcggcc aaagaattcg ctcaccgctt gctttactgc
     4381 gggcacccgg gtgctgccac ccaccatcac cacttcctgg atgtcgctgg cattgaggcc
     4441 ggcatctttc agcgcattgg tacagcagtc aattgttctt tttatgagcg gtgcaatcag
     4501 cgattcaaat ttttctttgg taagagaaag aacatctcca ttgagatcga tttcgaaagc
     4561 atcgtttgat gacagatgct tcttggcttt ctctgcagcc aaacgcaatt gttgcagcaa
     4621 gcttttgttg gctttcagtt cttccatacc gatgcctgcg gattcagccc aatgactgag
     4681 tatggcccgg tcaaaatcat cgccgccgag ataggtgtcg ccattggtgc tcagcacttc
     4741 aaacaccccg tggttgatgc gcaaaatgga aatatcaaat gtgcctccgc ccaggtcgta
     4801 cactgcaatg gtcttttctt ccgaagggtc aataccgaga ccataggcaa ggctggcagc
     4861 agtaggttca ttcacaatac gaagaacatc gaggccggcc aatttacctg catcgcgggt
     4921 ggcctggcgt tgtgcatcgt tgaagtaggc cggcaccgtg atcactgctt tggaaaccgg
     4981 tgttttcaaa atatgctcgg cacggttctt cagttctttc aggataaaag aagacagttc
     5041 aataggagag tagaagcgat tacccacctg cacttttacg aggcgctccg tatcatcgtc
     5101 aatcactttg taagtgaaaa agtctgcatg atcgcggata tcgttgtagc tcttgcccat
     5161 caggcgcttg gcactaaaga tggtgttttg aggctccgtt tccaggaagg ctttggcttg
     5221 ttcacccacc gaagcatttc caaattcgtc gaaatgcacc acggaaggaa ccagtgaact
     5281 gctgtcgtgc tccttcaggg ccacaggttt gccactttcg gggtggatga tggctacgag
     5341 gctgttggtg gtacccaggt cgatgcccac tatcatttcc tcctgctgca gactgcccgt
     5401 tgctatattg atgccaattt ttgccatagt cgatgctcct cctctgtaaa atggctttcg
     5461 ccacaaaaag tttgcgaaag tagcttttcc tgtgctgcag catctccgat aatgggaaaa
     5521 ctaatgttgg caaccggtaa ttattgcggg gaagcgccgc ggttcagcca tttgccggaa
     5581 atgccaatgg cagccagcca caaaatgaac acgaaggccg gaagtacaaa acggttggcc
     5641 caatcggcgc aaaagaacag gccgggtgcc agccaaatac ccaaagacag gaggatgaac
     5701 agcaataacc ggcggttggc cttagccaac agccaaatgc cccgaatggc cagggagtaa
     5761 tacagcagca tttgcgccac aaggaatgca ttgtgcgcaa aggaaaaata gggccttgtc
     5821 agccacacca ttttccaaag cctccaggca aataagcgaa tgctggtttc cgggtttgac
     5881 cagaagaaat gcaggatgcc tttctgcgga tcgtatggcg tgctgatgga ttgtgacaag
     5941 tgactgggaa gtccgcaaat gatgttggct tccgcattgt ggttggggta ataaaaatct
     6001 ttcgcatgat caaatacgta tggaacgcca atcaaggcca atagcaaaac gaatgaagcg
     6061 cctatccagg ctttcacctt aaccggtgaa cgcattaaca gccagaaaac catgcacgtg
     6121 acagcaaaga gaaatccaac gggtcggaag aaagggatgg tcagcagaat gatccaaaac
     6181 caaattttgt tttgagaggt ggcattgtgc ctgctcagca aatacaagcc aatggtgagc
     6241 aggtagcaaa agatgatgtc ggtgtagagg aaattattcc aaactgcaac tacagggcac
     6301 gtaatgtaga gtaggatagc agcagaagca tgtttggtcg aacgggaata agcatacagt
     6361 aaagcgccaa aagaatacgc cgcagcgagt gacaacaaca ggtgcatcac gtatacggct
     6421 gcattgggca aatgcagggc cagctgcaat acgcgaagtg caatgtagcc ggcataaaaa
     6481 acaaactgaa tgccaatgtg ctcaaatcgg ccagcgagcc agtcgcgggc cacgccttca
     6541 taggcttgcg cttcctgcga attgatgatg ccgtattgcc aaacaagcag ggtatgtgtg
     6601 gcagcccaaa cgagcagcaa gaggccaacc tgatttttct gcagtttgaa ctgatcagtc
     6661 attttatcgc aggatcacca tttttccgta gcccttgttg aagaatttgt cggtcatatc
     6721 catgctgtcc tggttgtagc cttcgttcag tttgagtttt tctatcgggt taccatcaag
     6781 gctggtgatc acacggtaga ggtaaacacc attggcgagt ttttgaccat acatgtccgt
     6841 gccatcccat ttgtactcgg taatgtttgt gcctatatgc agtggtccaa gttcctgccg
     6901 ggttatttct tttacgatcc ttcccgttac agtcatcacc tggatcttga attcctgtgg
     6961 cacttcgctg ccagtgatgg taaatacaaa agcggtactg gtgctgaaag gattggggta
     7021 attcagcagg ttgctgatca tcggcttatt cattacctgg aaggtgatgc ggtagtcaat
     7081 gttgcctgcc ttgttgccat tgcgatcgcg accggctacg gtaagttcat attcacttcc
     7141 tgcggcagca tctttattca attccgggta gaaatctacc aaggctgagt tgtcgccgct
     7201 gcccaggttg gcaggcgtaa actgcagggt gtctgttccc cagcgatatt ttctcgggtt
     7261 gttttcgccc gggaatttca actggatcgt tacaccagcc gtgtcgttca gcgccaggaa
     7321 acggctttcg tcagtaagct tgatttggat gtgcggtttg gccgatacga tatccttgtt
     7381 cagaatacgt acgccatcaa aagttacgtc cagcaatggg tttaccttgt cttcccgcac
     7441 ataaaatgtt ttgtaaagga agttgttgaa gaaatgctgc tcaggctgat cattatccgg
     7501 gttggctgcc aggtaaagtg tgttgacacc cgggaaatct ttggtagcca ggctcacgat
     7561 caacgtagtg gtgtcgcccg gtgtcagcgg ctttttgcgt gccagcgtta ccggacgggt
     7621 gatgttgttt cggtcgatca cgaatgcttt caatcgcaaa ctgtcaaacg ccacccggct
     7681 tacattctta aaggcaattc tgaattctaa cggctcacca agttcgaagg tgtcttttga
     7741 ttgcaaaaga acattgggag ccagggcgcc ttcgggcaca ggcgtataat gaatgcgcca
     7801 ccaacgcagt tgataaggtg tgccattggc agtgtccacg ttgcgcatct tcaatcgcag
     7861 gtacgggtac tgcactacac tgatgttgga tatgtcggca tcttgttgcg attcgctcag
     7921 tgtacgcaag aaggtttcgt tgccggcagc attcacgcca attacatcca cgcttgggat
     7981 gtcgccggct ttttgttcgg ccctggcacc acgccacatc acctgcttcc attctttggc
     8041 cgggccaaaa atgggtgaag tgatgaagcc aagtgaatca ggggtggggc agttttcatt
     8101 catctgcaat ttgccgaaca cgttttcatt catgcgccac accggcgtga agttcttgtc
     8161 attcttcttg tacaggaaga tgtaagtgct gggtttgttg aaagaatcaa tggctgcaaa
     8221 accagcattt ttcaaacgat gataaagcga gttgcccgtt ccaaatgatt gctcgtccgc
     8281 tttcaactgc ggagcgtagg tttcattttc ataaggtgcg tccaatactt tgcgtaccaa
     8341 aacataatga ccgtcaggga tggcatccat gaaatccatc atgagctttc ggtttgcttg
     8401 cacccggtcg tcccattcaa aattgtattg tcgtgtcaga ttcgcaagat cgcaacttat
     8461 ggcacttcca aatgcgcctc ccggatgatt tctccatggc ttgaaagtga tggggtcaaa
     8521 tacattgaac accatgctat gacctacgca
//
LOCUS       DATIQF010000920         1828 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_75338, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000920 DATIQF010000000
VERSION     DATIQF010000920.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1828
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75338"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..958)
                     /locus_tag="VLL95_15945"
     CDS             complement(<1..958)
                     /locus_tag="VLL95_15945"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSR40402.1"
                     /translation="MSPDGSRIAFSHQPDPLINSSVKSDISVVDLSSRKITSVVRNPS
                     SDGLEDWSPDSKELLFTSNESDTVSNFYKNSKLFAIELASGKVRAMAKDLDEDLGGFT
                     WTSTGIYGTLWNKTKRPMYRIDPVTGAHAVFMQAPDQLLNISFANDGKTFAFTGRNGD
                     QLPEVFRRSATGTETVSSMNAQIAQWKVASSEVISWKSKDGAVIEGVLHKPADYDPAK
                     KYPLLVVIHGGPTGIDVPTPVPGGVYPILQWLYKGCLVLRPNYRGSAGYGEAFRSLNV
                     QNLGVGDMWDVMSGVAYLQQKGMIDTSKMGCMGWSQGGYISAF"
     gene            complement(959..1627)
                     /locus_tag="VLL95_15950"
     CDS             complement(959..1627)
                     /locus_tag="VLL95_15950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40403.1"
                     /translation="MKRFIAMAIVLAAVVANAQTVPTIEDIISLRSVGAVQVSPDGKA
                     IAYTVQTTDWNENRYDTEIWLWREGSPAFQLTNNPKNSSSAPLFSPDGQWIAFLSDRG
                     NKSQVYVMRVNGGEARAVTNEAEGVSFYDWHPDGQRLIFVKQEAEDRMKKAREKRYGA
                     FEADDKEYNLSHLWEIAFRPDMPEPTEKPCYETVDSLKAKAGCIEWPKDKRITEGAYT
                     VTEF"
BASE COUNT          394 a          518 c          465 g          451 t
ORIGIN      
        1 aaaaagccga gatataaccg ccctggctcc agcccatgca acccatcttc gacgtatcga
       61 tcatcccttt ttgctgcagg taggctacac cgctcatcac gtcccacata tcgcctacgc
      121 ccaggttctg aacgttgagc gaacggaacg cttcgccata gcccgccgag ccgcggtagt
      181 tgggacgcaa caccaggcag cccttgtaca gccactgcaa aataggataa accccgcccg
      241 gcacaggcgt gggtacgtca atgcccgtag ggccaccgtg tatcaccacc agcaagggat
      301 attttttagc aggatcataa tcggcaggct tgtgcagcac gccttcaatc accgcgccgt
      361 ctttgctttt ccagctgatc acttcgctgc tggcaacttt ccattgggcg atctgtgcat
      421 tcatgctgct caccgtttcg gtaccagtgg cgctgcggcg aaacacttcg ggcagctgat
      481 ctccattgcg gccggtaaag gcaaaggttt tgccgtcgtt ggcaaacgag atattcaaca
      541 gctggtcggg cgcctgcata aaaacagcat gggcgccggt gacaggatca atgcggtaca
      601 tcggtctttt ggttttgttc caaagggtac cgtagatgcc cgtacttgtc caggtgaatc
      661 cgcccaggtc ttcgtcaagg tctttggcca tggcccgcac cttgccgctg gccaattcaa
      721 tggcaaagag tttcgagttc ttataaaagt tcgacaccgt atcgctttcg ttggaagtga
      781 acaacagttc tttcgaatcg ggcgaccagt cttccaatcc atccgaactc gggttgcgca
      841 ccacgctggt tattttccgc gatgacaaat ccaccaccga tatgtccgat tttacagagc
      901 tgttgatcag gggatcgggt tgatggctga aggcaatgcg gctgccatcg ggcgacacct
      961 aaaattcagt aacggtataa gcaccctccg ttattctttt gtccttgggc cattcaatgc
     1021 agcccgcttt ggctttcagc gaatccaccg tttcgtaaca gggtttttca gtgggttccg
     1081 gcatatccgg gcgaaaagcg atctcccaca aatgcgacaa gttgtattcc ttgtcatccg
     1141 cttcaaaagc gccgtagcgc ttctcccggg ccttcttcat tctgtcttcc gcttcctgct
     1201 tcacaaagat cagccgttgt ccatcggggt gccagtcgta aaaggatact ccttccgctt
     1261 cgttggtcac ggccctggcc tcgcccccgt tcacccgcat tacatacacc tggcttttgt
     1321 tgccgcggtc cgataggaaa gcgatccact gcccatcggg cgaaaacaag ggagcgctgc
     1381 tgctgttctt cgggttgttc gtgagctgaa aagccggcga cccttcgcgc cacaaccaga
     1441 tctcggtatc gtaacggttc tcattccagt cggtggtttg tacggtatag gctattgcct
     1501 tcccatcagg cgatacctgc accgccccca cgctgcgcag ggaaatgatg tcttcaatgg
     1561 tgggcacggt ttgggcattg gcaacaacgg cggccaacac aatggccatg gcaataaagc
     1621 gtttcatgct ttcagaaaat tgtgatgaac aaaaaatgaa ggtttgctaa tctaatcaat
     1681 tatcgacagg atgcaacgga tgggtggcgc catcagtgtt tcagccgtgt ctccgaaggg
     1741 acacggtgtt tgacaccgct gtttgtgttt ttcaccaaca gctcctgtca ttcatgcgtt
     1801 gttgcgggtg ataacaaccg caatggcg
//
LOCUS       DATIQF010000921         2549 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_227615,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000921 DATIQF010000000
VERSION     DATIQF010000921.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227615"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..648)
                     /locus_tag="VLL95_15955"
     CDS             complement(<1..648)
                     /locus_tag="VLL95_15955"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HSR40404.1"
                     /translation="MKSHDMAALAVKYNQPVPRYTSYPTVPFWQSPFASSEWKEAVSR
                     QFDASNLDTGISLYIHLPFCENLCTYCGCNKKITTNHGVENVYLQALEKEWRLYLDLF
                     GTKPVIRELHLGGGTPTFFSPENLRLLLEMIESNAVFHPNVEMSIEGHPNNTTTEHLQ
                     TLYDLGFRRISYGVQDNDPEVQRIINRIQPLENVQRATDEARRIGFESVNFDLIYG"
     gene            complement(736..1629)
                     /locus_tag="VLL95_15960"
     CDS             complement(736..1629)
                     /locus_tag="VLL95_15960"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HSR40405.1"
                     /translation="MVLTLLKIELYKIFRKPRTYIGFVAIAVIVGLIQLAMKADGPTW
                     LKLMFSGMDDMFAIQDGNVLNGYFVCFLILNTLLMQVPLLVALVTGDMIAGEANLGTL
                     RLLLTKPISRGNVLLAKFLAGLVYTFILLIWMAILSLLMSMLFFGTSDLLVNKSYAII
                     QFYVDNEGDDVFWRYIAAFGFAYAALACVAALSFMLSVFAENSIGPIVTTMSIIIVFT
                     IISTMDLPLFTRINPFLFTSYMTSWKGLFNMAVDENGAAIRGSVYSWKALLQALGILI
                     GHVGLFFGIAWYVFRRKDILS"
     gene            complement(1733..>2549)
                     /locus_tag="VLL95_15965"
     CDS             complement(1733..>2549)
                     /locus_tag="VLL95_15965"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR40406.1"
                     /translation="GDIYGFLGQNGAGKSTTIRMLLSLITPTAGEIEMFGYQMPAHRN
                     QILRQVGAIIERPDLYKYLSAYDNLEIFARLSGLKPTKQMLMEQLDKVGLAHRAQSKV
                     KTFSQGMKQRLGIAIALIHDPQLVILDEPTNGLDPQGIADMRNMIIALRKEHKKTVIV
                     SSHLLNEIEQVATRMIIIDKGRKVIEGKTEELFDPANTLVELHTHDRHAAEKLQRSHW
                     AKSMQQEEDAILFRLHANEVPALAKELVDLDIPIDNLSKRHSLESLFLQLTGK"
BASE COUNT          654 a          627 c          613 g          655 t
ORIGIN      
        1 gccatagatc aaatcgaaat tcaccgattc aaacccaatg cggcgggctt cgtctgtggc
       61 tcgctgcaca ttttccaaag gctgtatcct gttgatgatg cgctgcactt ccgggtcgtt
      121 atcctgcacg ccataactga tgcgacggaa tcccaaatcg tacaaggtct gcaggtgttc
      181 ggttgtagta ttgttcggat ggccttcgat gctcatttcc acgttgggat gaaacacagc
      241 atttgattcg atcatctcca gcaacagcct caaattttct ggcgaaaaaa aggtaggggt
      301 accaccaccc aaatgcaatt cacgaatgac aggcttagtg ccaaacagat ccaggtaaag
      361 ccgccattcc ttttcaaggg cctgcaaata cacattctcc accccatgat tggtggtgat
      421 cttcttgttg cagccacagt aggtgcacaa gttttcgcaa aatggcaaat gaatgtagag
      481 gctgataccc gtatccaggt tgctggcatc gaactgcctg cttacagctt ccttccattc
      541 actgctggca aatggcgatt gccaaaatgg aacggtagga taactggtat accggggcac
      601 aggctgattg tacttcactg ccagcgcagc catatcatgg gacttcatga tgcaaaaatc
      661 tccgtgatgc tcccgccgaa agatgatttg catcattcag acagccggtc ttgtcatatg
      721 aatgtcaaaa aaagctcagc tcaaaatatc ctttcgccgg aagacatacc aggcaatgcc
      781 aaagaagagg cccacatgtc caatcaaaat acccaatgcc tgcagcaaag ccttccatga
      841 ataaacagag ccgcgaatgg cagcgccgtt ttcatcaacc gccatgttga acaatccttt
      901 ccatgaagtc atgtagctgg taaagagaaa tggattgatc cttgtaaaca atggcaggtc
      961 catggtgctg ataatggtga acacgatgat gatgctcatg gtagtaacga tgggtccaat
     1021 gctgttttcg gcaaacacgc tgagcatgaa tgacaaagct gctacacaag ccaacgccgc
     1081 ataggcaaaa ccaaacgcgg cgatgtagcg ccagaaaacg tcgtcgcctt cattgtcgac
     1141 ataaaactgg ataatggcgt agctcttgtt gaccagcaaa tcgctggtgc caaaaaacaa
     1201 catgctcatc aaaagagaaa ggatggccat ccaaatgagc aggatgaagg tgtacaccaa
     1261 accggccagg aatttggcca gcaacacgtt tccacggcta atgggtttgg tgagcaacaa
     1321 ccgcaatgtg ccgaggttgg cttctccggc tatcatatcg cccgtcacca atgccaccag
     1381 caggggcact tgcatcaaca gcgtattcag gataagaaaa cacacgaagt atccattgag
     1441 aacattgcca tcctggatgg caaacatatc atccatgccg ctgaacatga gcttaagcca
     1501 ggtagggccg tcggccttca tggccagttg aatcaaaccg acgatcacgg caatggcgac
     1561 gaatccaata taggtacgcg gcttgcgaaa tattttgtag agttcgattt tcagtaatgt
     1621 aagaaccact tatttagtgt ttgttgtttt tggttttttg tttttggttg gcgggtatac
     1681 tttgtaagtg cgatttcaac tcgtgaacat gtgaacttgt gaactattca actcatttcc
     1741 ctgtcaattg taaaaacagg ctttcgaggg aatgacgttt gctcaggtta tcaatgggaa
     1801 tatcaaggtc taccaattct tttgccagcg ccggcacctc gttggcatgt agccgaaaca
     1861 gaatggcatc ttcttcctgc tgcatgcttt tggcccaatg gctgcgctgc aatttttcgg
     1921 cggcatgcct atcgtgtgtg tgcaactcca ccagcgtatt ggcggggtca aataattcct
     1981 cggtttttcc ttcaatcact ttccttccct tgtcaataat gatcatgcgg gtggccacct
     2041 gttctatttc gttcagcagg tggctgctca caatcactgt tttcttatgc tctttgcgca
     2101 gcgcaatgat catgttgcgc atgtcggcaa taccctgtgg atcgagcccg ttggtaggtt
     2161 catccagaat caccagttgc ggatcatgta tcagtgcaat cgcaatgccc agccgctgct
     2221 tcatgccctg gctgaaagtc ttcactttgc tttgtgcccg gtgtgccaat cccaccttgt
     2281 caagctgttc catcagcatt tgcttagtgg gtttgaggcc gctgaggcgg gcaaaaatct
     2341 ccaggttgtc gtaagcgctg aggtacttgt ataagtcggg ccgctctata atggcgccta
     2401 cctggcgaag gatctggttc cgatgagccg gcatttggta accaaacatt tcaatttcgc
     2461 cggcagtggg tgtaatgagg gaaagcagca tgcggatggt ggtgcttttg ccggcaccat
     2521 tctgaccgag gaatccatag atatccccg
//
LOCUS       DATIQF010000922         3572 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_75359, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000922 DATIQF010000000
VERSION     DATIQF010000922.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3572
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75359"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1250
                     /locus_tag="VLL95_15970"
     CDS             <1..1250
                     /locus_tag="VLL95_15970"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSR40407.1"
                     /translation="QSKYNRLPELGASFNYGGSRGRSIDPFTNQFVDQAFSNSNSLVS
                     ASLPLFTGGQIKNTIDQNREILNASQMDLQQAKDNLTINVIAAYLAVLNNEDQLAVAK
                     NQQEVSGKQVERLQIVFKEGATAPYTLSDLRGEFASNKVSVINSINNLEQSKITLCRL
                     MGIPVESDLQLSRDEVTIQVKDYGAQAVQVYTDAVDNMALVKAAFYREAAARKAVSVA
                     KGSLWPTLSLNGSFGSNFSSAAEKYSVVNEFYGPTDAFVNIGPTQVPVYAKQQTTQKD
                     PFGFGAQYSNNRNAQFGINLNVPILSRLSLRNRVTQARINLKNAEAVNNITKVQLQQD
                     VEQAYRNMDAAYDRYHVLQEQVEALKESFRAAEVRFESGVINSAEYLVIKNAYDRSVV
                     NFTQAGYEYVLRTRILDYYRGRL"
     gene            complement(1346..1882)
                     /locus_tag="VLL95_15975"
     CDS             complement(1346..1882)
                     /locus_tag="VLL95_15975"
                     /EC_number="4.1.2.50"
                     /inference="COORDINATES: protein motif:HMM:NF013411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070497 -
                     6-carboxy-5,6,7,8-tetrahydropterin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HSR40408.1"
                     /translation="MAGWVETAEGKTIAASRFHSCVLSGLETRDPCIFADMLRVTKIF
                     RFETAHAIHGYNGSCRNIHGHSYELHVTVQQQYHEDEYLPAPGFVIDFKELKRMVHFA
                     VIDRFDHCIILSEAYLEAHPFLRSLPNLEVWEAEPTAENILLYIKNKLVHQLPEDVRL
                     HELKLYETADSYAEWSAQ"
     gene            1881..2333
                     /locus_tag="VLL95_15980"
     CDS             1881..2333
                     /locus_tag="VLL95_15980"
                     /inference="COORDINATES: protein motif:HMM:NF013412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HSR40409.1"
                     /translation="MESILQHINHFVEAQTVASVCCQDDQGALHCFSCYYAYDAEHQL
                     LHFKTSEDTLHMKLLAKHPHLAGTILPDKLNKLKVQGIQFTGVLVDPSDNDARQAGKH
                     YHLKHPLAVAMDGKVRTIRINWIKMTDNTLGFGTKLVWDRSHYSVPLR"
     gene            2401..3489
                     /locus_tag="VLL95_15985"
     CDS             2401..3489
                     /locus_tag="VLL95_15985"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HSR40410.1"
                     /translation="MQRIFLVVLSLLIQPHLKAQPIENIIFVTTDGFRWQEMFTGMDS
                     AIANNKKFNEGDSAKIYANYWATTAQERRSRLMPFVWNTIVQQGQLYGNRHKGSLVNV
                     ANPHWFSYPGYSEMMTGFADTAINSNSYPPNPHVTVLEYLQQQPAFKGKVAAFGAWEA
                     FNRILNEQRSGINVVAAFDTSGGAHPNAQQLLINRMLRDSYKPWEEGECLDVFTHHAA
                     MEELKRSQPRILYIAYGETDEWAHAGRYRSYLDAAHQVDAWIKELWDYVQSNPQYKNK
                     TALLITTDHGRGDTINDQWTDHGSKIEEANEIWLAVMAPGIAAKGEAGAHAMLYQQQI
                     AQTIARLLGQKFTASHPVAESISPVFDK"
BASE COUNT          974 a          906 c          895 g          797 t
ORIGIN      
        1 agcaatcgaa atacaaccgg ctgccggaac tgggcgccag cttcaattat ggaggaagcc
       61 ggggccgcag catcgatccg ttcaccaacc agtttgtgga ccaggccttt tccaattcca
      121 actcgttggt cagtgcatcg ctgccgttgt ttaccggtgg ccagatcaag aatacgatcg
      181 accagaaccg ggagatactc aatgccagcc agatggatct gcaacaggca aaggacaacc
      241 tgaccattaa tgtgattgct gcttacctgg ccgtactcaa caatgaagat cagctggccg
      301 ttgccaaaaa tcagcaggaa gtgtcgggca agcaggtgga gcgtttgcag atcgttttca
      361 aagagggcgc cactgctccc tataccctga gtgacttgcg gggagaattt gcttccaaca
      421 aagtgagtgt catcaacagc atcaacaatc tcgaacaatc gaagatcacc ctgtgccggc
      481 tgatgggcat acctgtagaa agcgacttgc agctgagccg tgatgaagtg accatacagg
      541 tgaaggacta tggcgcacaa gcagtgcagg tatacaccga cgcggtagac aacatggccc
      601 tggtaaaagc cgctttttat cgcgaagccg ctgcccgcaa agcggtgagt gtagccaagg
      661 ggagcttgtg gcctaccctt agccttaacg gaagctttgg ttccaatttt tcaagtgcgg
      721 cggaaaagta ttcagtagtg aatgagtttt acggccctac cgatgccttt gtaaacattg
      781 gccccacaca ggtgcccgtg tatgccaaac agcaaaccac gcaaaaggat ccctttggat
      841 ttggtgcaca atacagcaac aaccggaatg cgcaatttgg catcaacctg aatgtgccca
      901 tcctgtcgag gctgtcatta cgcaaccgtg ttacacaggc caggatcaac ctcaaaaacg
      961 ccgaagcggt taacaatatc accaaagtgc aattgcagca ggatgtggaa caagcatacc
     1021 gcaacatgga tgcggcctac gatcgctatc atgtattgca ggaacaagtt gaggcgctga
     1081 aagaatcctt ccgggcggct gaagtgcgtt ttgaaagtgg tgtcatcaac agcgcggaat
     1141 accttgttat caaaaacgcg tatgacagaa gcgtggtcaa ctttacgcaa gccggctacg
     1201 aatacgtgct gcgcacccgc atactggatt actaccgggg aaggttgtag tgagtgacgg
     1261 gtatcaagcc gcaggaaacc tgccatgatt gaggcttctc caaatgagta ttgcttcttc
     1321 gctcttgtga atgaacagca tttacttatt gcgcactcca ctctgcatac gaatccgccg
     1381 tttcatacaa cttcagttca tgcaagcgca catcttccgg caattgatgt accagcttgt
     1441 ttttgatata cagcaaaatg ttttctgccg taggttccgc ttcccatact tcaaggttgg
     1501 gcagtgacct caaaaaggga tgcgcctcca ggtaggcttc cgacaaaatg atgcagtgat
     1561 cgaaccgatc gatgacggca aaatgcacca tgcgcttcag ctctttaaaa tcaatcacaa
     1621 atcccggtgc cggcaggtat tcatcttcat ggtactgttg ctgaacggtc acatgcagtt
     1681 cgtaggagtg accgtgaata ttgcggcaac tgccattgta accatgaatg gcatgggccg
     1741 tctcaaatcg gaatattttg gtaacgcgta acatgtcggc aaaaatgcaa gggtctcggg
     1801 tttccaaacc tgacaaaacg caggaatgaa accggctggc agcaatagtt ttgccttctg
     1861 ctgtttcaac ccagcctgcc atggagagta ttttacaaca catcaaccat tttgtggaag
     1921 cacaaaccgt tgccagcgta tgctgccagg atgaccaggg ggcgctgcat tgtttcagct
     1981 gctattacgc ttacgatgcc gagcaccaac tcctgcattt caaaacttca gaagatacgc
     2041 tccacatgaa actgctggca aagcatccgc acctggccgg aacgattttg ccagacaaac
     2101 tgaacaaact gaaagtgcag ggcatccaat tcactggtgt tttagtcgac ccttctgaca
     2161 atgatgcccg acaggcaggt aagcattatc acctcaaaca tccattggca gtggcaatgg
     2221 atggcaaggt gcgaaccatc cggatcaatt ggatcaaaat gacggacaac accctgggct
     2281 ttggcaccaa actggtatgg gacaggtcac actactctgt tccgttgaga taagtggccg
     2341 ctgcccgtgg aaaggcaata aaaggtgcta tcattgttta gcaaaaattg gttagccgtc
     2401 atgcagcgta tatttcttgt cgtactcagc cttctcattc aacctcactt gaaggcgcag
     2461 ccaatcgaaa acatcatttt cgtaaccacc gacggttttc gctggcagga aatgtttacc
     2521 ggcatggaca gtgccattgc caacaacaag aaattcaacg aaggtgacag tgcaaaaatc
     2581 tacgcaaatt attgggcaac cactgcgcag gaacgtcgca gcaggctgat gccatttgtg
     2641 tggaatacca tcgtccaaca gggtcagttg tatggcaacc gccacaaggg ctcgctggtg
     2701 aatgtggcca accctcattg gttcagctat cccggctaca gcgaaatgat gactggcttt
     2761 gccgataccg ccatcaacag caacagctat ccgcccaacc cgcatgtaac ggtgctcgaa
     2821 tacttacaac aacaacctgc tttcaaagga aaggtggccg catttggtgc atgggaagca
     2881 ttcaaccgca ttttgaatga acaacgcagc ggcatcaatg tggtggccgc ttttgatacc
     2941 tcgggtggtg cccatcccaa tgcgcagcaa ttgctgatca accgcatgct tcgtgacagc
     3001 tacaagccat gggaggaagg agaatgcctc gatgtgttta cgcatcatgc cgccatggaa
     3061 gaactgaaga gaagccagcc ccggatacta tacatagcct acggcgaaac cgacgaatgg
     3121 gcccatgccg gcaggtatcg cagttacctg gatgcggccc accaggtgga tgcatggatc
     3181 aaagagctgt gggattatgt gcaaagcaat ccgcagtaca aaaacaaaac agccttgctc
     3241 attactaccg atcatggccg cggcgataca ataaatgacc aatggacaga ccatggcagt
     3301 aagatcgaag aagccaatga aatctggctg gcggtgatgg cgccgggtat tgctgccaaa
     3361 ggagaagcag gcgctcacgc catgttgtac cagcagcaaa tagcacaaac cattgcccga
     3421 ttgctggggc aaaaatttac ggccagtcac ccggtggctg aatcgatcag cccggtgttt
     3481 gataaatgat ttcattctta gcaacgtctc cgttacggca cgttgcgcat ttgaattggc
     3541 ctgcttggtt atgatgcaac gtcccttgaa tc
//
LOCUS       DATIQF010000923         2070 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_30000, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000923 DATIQF010000000
VERSION     DATIQF010000923.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2070
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30000"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1817)
                     /gene="mnmG"
                     /locus_tag="VLL95_15990"
     CDS             complement(<1..1817)
                     /gene="mnmG"
                     /locus_tag="VLL95_15990"
                     /inference="COORDINATES: protein motif:HMM:TIGR00136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HSR40411.1"
                     /translation="MFPDYDVIVVGAGHAGCEAAASAANMGSKVLLVTMNMQTIAQMS
                     CNPAMGGIAKGQIVREVDALGGYSGIVTDKSMIQFRMLNRSKGPAMWSPRAQNDRMLF
                     AATWREMLEQTPNVDFYQDMVKGLLVKDGQCCGVITGLGHEIKAKSVVVTSGTFLNGV
                     IHIGEKQLGGGRISEKAATGITEQLVELGFEADRLKTGTPPRIDGRSLDYSKMERQDG
                     DETLTGFSYLDVPKITADQQKPCWITYTNQAVHDILKTGFDKSPMYQGRIQGVGPRYC
                     PSIEDKISRFAERDRHQLFVEPEGWNTVEIYVNGFSSSLPEEVQMKSLRMVPGFENCR
                     MFRPGYAIEYDYFPPTQLKYTLETKLIANLFFAGQINGTTGYEEAACQGLMAGMNAHL
                     KARGEAPFTLKRSDAYIGVLIDDLINKGTDEPYRMFTSRAEFRTLLRQDNADLRLTPL
                     SHKVGLAGDNRMELVASKEQAVEAIRKIFQEFGVEPDEINPYFNTIGSSPIPEKFKAA
                     KLLLRPNVEVEDLLTAVPRLASALEAFDKDALEQAAIQMKYETYIEKEKDLVVKMAQL
                     EDLEIPETFDYLKVHALSNEARQKFQRIRPRTLGQASRI"
BASE COUNT          441 a          595 c          502 g          532 t
ORIGIN      
        1 ctgatgcgac tggcctggcc cagggttctg ggtcgaatcc tttgaaactt ctgccgggct
       61 tcgttgctca gggcatgcac tttcaggtaa tcgaatgttt cggggatctc gagatcctcc
      121 aattgcgcca ttttcaccac gaggtccttc tctttctcaa tgtaggtttc gtatttcatc
      181 tggatggctg cctgttccaa tgcgtccttg tcaaacgctt ccagggctga tgccaggcgg
      241 ggtaccgcgg tcagcaagtc ttccacttcc acattggggc gaagcagcag tttcgcggcc
      301 ttgaactttt cgggtatggg cgacgatccg atggtattga agtaaggatt gatctcatcg
      361 ggctccactc cgaattcctg gaagatcttc ctgatggctt caacagcctg ctccttgctg
      421 gcaacaagct ccatcctgtt gtcgcccgcc agacccactt tgtgactcaa tggggtcagc
      481 cgcaggtcgg cattgtcctg ccggagcagg gtcctgaact ctgcacggct ggtaaacatg
      541 cggtaaggtt catccgtacc cttgttgatc aggtcatcta tcagcacccc gatgtaggca
      601 tcgctgcgct tgagggtaaa gggcgcttct cccctggcct tgagatgggc attcattcca
      661 gccatcaggc cctggcaggc tgcctcctcg taaccggtgg tcccattgat ctggccggcg
      721 aagaaaaggt tggctatcag cttggtttcc aatgtgtact tcagctgtgt aggcgggaaa
      781 tagtcgtatt caatggcata gccgggcctg aacatgcggc agttttcaaa tcccggcacc
      841 atgcgaaggg acttcatctg cacttcctcg ggcaggctgc tgctgaatcc attcacatag
      901 atttcaactg tattccagcc ttccggctct acaaacagct gatggcgatc ccgctctgcg
      961 aaccggctga tcttatcctc gatgctggga caataccttg gcccaacgcc ctgtatgcgc
     1021 ccctggtaca tggggctttt gtcgaatccc gtctttaaga tatcgtgtac agcctggttg
     1081 gtataagtga tccaacaggg cttttgctga tcagcggtta ttttgggcac atccaggtaa
     1141 gaaaacccgg tgagggtttc atccccatcc tgtcgctcca tttttgaata atcgaggctc
     1201 cggccatcaa tccttggggg tgtccctgtc ttcaagcggt cagcttcaaa gcccaattcc
     1261 accaattgtt cggttattcc agtggccgcc ttttctgaaa tccggcctcc ccccaactgc
     1321 ttttccccta tatggatcac tccattcagg aaagtgccgc tggtcacgac cactgatttc
     1381 gccttgattt catgtcccaa acctgtaatg acgccgcagc attggccatc cttcaccaag
     1441 agacctttga ccatatcctg gtaaaagtca acgttgggag tctgttccag catttcccgc
     1501 caggtagcag caaagagcat gcggtcgttc tgcgccctcg ggctccacat agcggggcct
     1561 ttgctgcggt taagcatgcg aaactggatc atgctcttgt cggtcacaat accgctatag
     1621 ccgcccaagg catctacctc ccgcacaatc tggcccttgg cgataccacc catggcagga
     1681 ttgcagctca tttgggcaat ggtttgcatg ttcatagtca ccagcagcac cttgctgccc
     1741 atattggcgg cagaggcagc agcttcacaa ccggcatgcc cagcccctac aacaattaca
     1801 tcataatcag gaaacatggc gcaaaagtaa acgatgcgcc ctttacccta ttccgaatcc
     1861 cgatgttcca cgtggaacaa aatacaacgg tgaggttttg ataaacatag ccatgttcca
     1921 cgtggaacaa tcaaatagct gttttgtata aatccaggta gcgatcttct gctgccctca
     1981 tcttagctac atcaggctta cgcttgtcct tgtacccaca gaggtgcagc aaaccgtgaa
     2041 acaccacccg gcataactcc tcttcaaaag
//
LOCUS       DATIQF010000924         4507 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_257930,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000924 DATIQF010000000
VERSION     DATIQF010000924.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4507
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257930"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2164)
                     /locus_tag="VLL95_15995"
     CDS             complement(<1..2164)
                     /locus_tag="VLL95_15995"
                     /inference="COORDINATES: protein motif:HMM:NF014026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HSR40412.1"
                     /translation="MNRLFLVAAFVGIGGISYAQTAGMRKKAQEWVSQMTLEEKAQMV
                     VGMGMKIPGMPQLGGPTVGQTEDKVPGAAGTTYSIPRLGIPTTVTADGPAGLRISPFR
                     NNDSTRSYYATAWPIETLIASSWDTELAMAVGKAMGAEAKAYGVDYILAPALNIHRNP
                     LGGRNFEYFSEDPVVSGKFTAAMVNGIESNGVGTSIKHFAANNQETNRNQVNTIVSER
                     ALREIYLRGFEIAVRESQPWTVMSSYNRINGPYTSENYDLLTTILRKEWGFNGFVMTD
                     WFGGSDVVAQMKAGNDLIMPGTPDQVKRILEAVKNKQLDEKVLDENVARILAVAQMGL
                     AFNNVTPTNQPDLKTHARLARQAAAEGIVLMKNENNTLPLNGAKKIAAFGNTSYEFIS
                     GGTCSGDVNEAYTISLVDGMQQAGYQFDDNLARRYATHIAAEKAKQPKRRMFFELLPP
                     LAELEWNNADVEQLAASTDIALVTIGRNSGEFQDRKKENDFDLTAAEQQLLTNVSKAF
                     RARGKKVVVVLNIGGVIETASWRNNADAIVLAWQGGQEAGNALADVLTGKVNPSGKLT
                     MSFPVKYEEVASAKNFPGRELDMPAAKGPLGIPMGKASEVVYEEGIYVGYRYYNSFKV
                     PVAYPFGYGLSYTSFAYSELKVSSPDKDGTVKLSVTVTNTGKTAGKEAVQIYVAAPAA
                     GLEKPSEELKAFGKTKELKPGEKQTLHFELPVKFLASFD"
     gene            complement(2237..2812)
                     /locus_tag="VLL95_16000"
     CDS             complement(2237..2812)
                     /locus_tag="VLL95_16000"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HSR40413.1"
                     /translation="MDHSLNQLSEALDRIHPLQHEMRDLFLQAWQQWDLPKDHFVLRE
                     HRVADYIWYIEKGAVRIFYHKDEKEITEWLALDDQFFMSITSFFQRVPSRLIIQTLEP
                     SSIWSIHHDTFMKLADEHHEIERMLRMMVTGSLILSQQRMEAIQFETAQQRYQRLLQD
                     APDIVSRVPGVHLASFLGITKETLSRIRGMH"
     gene            complement(2831..3349)
                     /locus_tag="VLL95_16005"
     CDS             complement(2831..3349)
                     /locus_tag="VLL95_16005"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HSR40414.1"
                     /translation="MRCFLFILFLHVGSIAASSQDDLFIRSTVERLKNAKDYSLKVAE
                     AMPADKYDFRPTPAEMSFGGMLMHLAENLLYISTEFVSTDRGKAMGAMPTDSSKANTI
                     KTLSAAYDAAIATVATLPKENLADSVAFFAGKITKMQMINILSDHQTHHRGQLIVYLR
                     LNGIVPPRYIAW"
     gene            3475..3987
                     /locus_tag="VLL95_16010"
     CDS             3475..3987
                     /locus_tag="VLL95_16010"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR40415.1"
                     /translation="MQASIVTEQDYPAIVQLVNAAYRGEASKEGWTTEAWIVGGEKRT
                     NEQHLASLLQQPGAVMLQVKSDAGELLGCVFLRQDDEGLYLGMLSVWPKLQTHGVGKT
                     LMWMAEEHAHQLGVHRIYMHVITARTELLEWYYRRGYVSTGQFKTFPSDPEFGVALQP
                     LEFVVLEKQL"
     gene            complement(3989..>4507)
                     /locus_tag="VLL95_16015"
     CDS             complement(3989..>4507)
                     /locus_tag="VLL95_16015"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HSR40416.1"
                     /translation="NRLIWMLPNGQFGFYDKRHLFAYAGEDKHYSAGSKRLIASVKGF
                     RIHLQVCYDLRFPVWARQQVQEDSEAEYDVLIYVANWPERRSHAWRTLLQARAIENQC
                     YVIGVNRVGEDGNGIYHSGNSMVVDAMGDVLFEQAHEPVIHTITLSKDALNEVRGKLP
                     FLKDRDSFRIDG"
BASE COUNT         1025 a         1196 c         1109 g         1177 t
ORIGIN      
        1 tgtcaaaaga agccaggaac tttaccggca attcaaaatg cagggtttgc ttttcacccg
       61 gcttcagttc cttcgttttg ccgaatgcct tgagttcttc gctgggtttt tccaggccag
      121 cggccggggc agccacgtat atctgcacgg cttctttgcc ggccgttttt ccagtgttgg
      181 taaccgttac cgacagtttc accgtaccgt ccttgtcggg gctgctcact ttcagctcac
      241 tataggcaaa gctggtgtac gacaatccat aaccaaacgg ataggcaacc ggcactttaa
      301 aactgttgta gtagcgatag cccacataaa ttccttcttc atacaccact tccgaagctt
      361 tgcccatggg tatgcccaag gggcctttgg cagctggcat atccaattca cggccgggga
      421 agtttttggc agaagccacc tcttcatatt tcaccgggaa cgacatggtc agtttgccgg
      481 aaggattcac tttgccggtg agtacatcag ccagcgcatt gccggcttcc tgcccaccct
      541 gccatgccag cacaatggcg tcagcgttat ttctccagct ggcagtttca atcacacctc
      601 ctatgttcag caccaccact acttttttgc ccctggccct gaaggctttt gaaacattgg
      661 tcagcagttg ctgctccgca gcggtaagat caaagtcgtt ctcctttttg cgatcctgga
      721 actcgccgct gttgcggcca atggtcacca gggctatatc ggtactggcg gccaattgct
      781 ccacgtcggc attgttccat tccagttctg ccagcggcgg cagcagttca aagaacatcc
      841 gccgcttggg ttgttttgct ttttcggcag ctatgtgagt ggcatagcgg cgggccaggt
      901 tgtcatcgaa ctggtagcct gcctgctgca tgccgtctac cagtgaaatg gtataggcct
      961 catttacatc gccactgcac gttccgccgg aaatgaattc ataggaagtg tttccaaaag
     1021 cagcaatctt cttcgccccg ttcaatggca gggtgttgtt ttcattcttc atcaatacaa
     1081 tgccttcagc ggcagcctgg cgggccagcc tggcatgtgt tttcagatcg ggctggttgg
     1141 taggagtaac gttgttgaat gccaaaccca tttgcgctac ggccagtatg cgggctacat
     1201 tttcatccag tactttttca tcgagctgtt tgttctttac tgcttccagt atccttttca
     1261 cctggtcggg cgtaccgggc ataatgaggt cgttgccggc tttcatttga gccaccacat
     1321 ctgagccacc aaaccagtcg gtcattacaa atccattgaa gccccactcc ttgcgcagta
     1381 tggtggtcag caggtcataa ttctccgaag tgtaaggccc gttgatgcgg ttgtaagagc
     1441 tcatgaccgt ccatggttgc gattccctca ccgcgatttc gaagccacgc aaataaattt
     1501 cccgcagggc cctttcactc acaatggtat ttacctggtt tcggttggtt tcctggttgt
     1561 tggcagcaaa gtgtttaatg gaggtgccca caccattgct ctcaatgcca ttgaccatgg
     1621 cggccgtaaa cttgccggat accaccgggt cttctgagaa gtattcgaaa tttcttccgc
     1681 ccagcgggtt gcggtgaata ttgagtgccg gcgccaggat gtaatccact ccataagctt
     1741 tggcttctgc ccccatggct ttgccaacag ccattgccag ttcggtatcc cagctgctgg
     1801 caatcagcgt ttcaataggc catgccgtgg cgtagtaaga ccttgtgctg tcgttgttgc
     1861 ggaaagggct gatgcgcaaa ccggcaggac catctgctgt aacggtggtg ggaatgccca
     1921 accgcgggat gctgtaggtc gttcctgccg cacccggcac tttgtcttcg gtttgtccca
     1981 ccgtagggcc gcccagttgt ggcattccgg gaattttcat acccatgcct actaccatct
     2041 gggctttttc ctccagtgtc atttggctca cccattcctg ggcctttttg cgcataccgg
     2101 cagtttgagc gtaggaaatg ccgccgatac caacaaaggc agctacaagg aaaagacgat
     2161 tcatacagct ttgcatttag gggtacaaat ctcttttcta tcaaccaaga caggattgat
     2221 atatgtcaat aaatgatcag tgcatgccgc ggatgcgact cagcgtttcc ttggtaatgc
     2281 ccaggaaaga agccaggtgt acacccggca cacggctcac aatatcaggt gcgtcctgaa
     2341 gcaggcgctg gtatcgctgc tgtgccgttt caaactggat ggcttccatg cgctgctgcg
     2401 aaagaatcag cgatcccgtc accatcatcc ggagcatgcg ttcgatttcg tgatgctcat
     2461 ccgccagctt catgaaagta tcatgatgaa tgctccatat gctgctgggc tccagggttt
     2521 gaatgatgag cctgctggga acgcgttgaa agaaactggt gatggacatg aaaaactggt
     2581 catccaatgc cagccactcg gtgatttcct tttcgtcttt atgataaaaa atgcggacgg
     2641 cccctttttc gatgtaccaa atgtaatcgg ctacccggtg ctctcgcaat acgaaatgat
     2701 ctttgggcag gtcccattgc tgccaggctt gcagaaaaag atcacgcatc tcatgttgca
     2761 acggatgaat acgatccagc gcctctgata attgatttaa tgaatgatcc ataaatgcat
     2821 gattaatgcg ttaccacgct atatacctcg gtggtacaat tccattcaaa cggagataca
     2881 ctatcaactg accacgatga tgcgtttggt gatcactcaa aatattgatc atttgcattt
     2941 tggtgatttt gccggcaaag aaggcaacac tatccgccag gttttctttg ggcaatgtag
     3001 ccaccgtagc gatggcggca tcgtaggctg ccgaaagtgt tttgatggtg tttgccttgc
     3061 tgctgtcggt aggcatagcc cccatggcct tccccctgtc ggtcgaaaca aattctgtgc
     3121 tgatgtacaa caaattttca gccagatgca tgagcatacc accaaaactc atttcagccg
     3181 gcgtgggtct gaaatcatat ttgtcggctg gcattgcctc tgccactttc aggctgtagt
     3241 cctttgcgtt tttcaaacgc tctacggtag agcgaataaa cagatcgtcc tgcgatgatg
     3301 ccgcaatact gccaacatgc aggaaaagaa tgaaaaggaa acatctcatg ggctaagcat
     3361 ttctacctgt aaatgtctgc caatagaatg aaacaatgcc agcctttctg ccggcccgaa
     3421 aacacattca gattggcaat catgtatagg aatttatcct acattcgatc gtacatgcaa
     3481 gcctctattg tcacagaaca agattatcct gccattgtac agctggtgaa cgccgcctac
     3541 cgcggtgagg ccagcaagga aggctggaca acagaggcat ggatagtggg aggcgaaaag
     3601 cgtaccaacg aacagcacct tgccagtttg cttcagcaac ccggggcagt catgctgcag
     3661 gtaaagtcag acgctggtga attgcttggc tgtgttttcc tgcgccagga tgacgagggc
     3721 ctttacctgg gcatgctgag cgtatggccc aaattacaga cacatggcgt gggcaaaaca
     3781 ctgatgtgga tggccgagga acatgcccac cagcttggcg tgcatcgcat ttacatgcat
     3841 gtgatcacag cccgtaccga attattggaa tggtattatc gtcgcggcta tgtatccacc
     3901 ggccagttca agacttttcc ttctgatcct gaatttggcg tggcattgca gcccctcgaa
     3961 tttgtagtgc tggaaaaaca gctttgattc atccgtcaat ccggaagctg tcgcggtctt
     4021 tcaaaaaagg cagcttgccc ctgacttcat tcaatgcatc tttcgacaat gtgatggtat
     4081 gaatcacagg ctcatgcgcc tgttcaaaca acacatcgcc catcgcatcc accaccatgc
     4141 tgttgccact gtggtaaatg ccgttgccat cttcacctac gcggttcaca ccaatcacat
     4201 agcattgatt ttcgatggcc ctcgcctgca gcaatgtgcg ccacgcatga gatcggcgct
     4261 ccggccagtt ggccacatat atgagcacat catattcagc ttcgctatcc tcctgcactt
     4321 gttggcgggc ccaaaccggg aagcgcaggt catagcatac ctgcaggtga atgcgaaatc
     4381 cttttaccga ggcgatgagc cgcttgcttc cggccgaata atgtttgtct tcgccggcat
     4441 aagcaaacag gtggcgcttg tcgtagaagc caaactgccc gttgggaagc atccagataa
     4501 gccggtt
//
LOCUS       DATIQF010000925         2234 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_14688, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000925 DATIQF010000000
VERSION     DATIQF010000925.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2234)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2234
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14688"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1826)
                     /locus_tag="VLL95_16020"
     CDS             complement(<1..1826)
                     /locus_tag="VLL95_16020"
                     /inference="COORDINATES: protein motif:HMM:NF024245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HSR40417.1"
                     /translation="MAQEIQNSTIEQQLENQAEADEAETEDDSYYQQLQLYRRNPLNV
                     NNATEGDLQPLRFLTDFQIQKFLQYRRLMGPLLSFYELQAIPGWDVETINRIRPFVMV
                     GPAYTLFETMNTRFSKGEHSLLMRVSQTLQKSKGFLPKDTLPPAYPGSPQRLLLRYKY
                     TYKNLLQFGMLGEKDPGEQFFKGAQSKGFDFYSFHLFVRNLGVIKQLAIGDFTLNLGQ
                     GLLTYQSLGFRKSVDVMNIKRQTEILRPYNSPGEVNSLRGAAITLGQGPWSFTAFATR
                     QKVSANAEVDSVYNEDYVSSILNNGYHRTSSETADRRNITQSSVGGRLHYKKGMFMAG
                     VNAIHFSLSKPLRKDSLPYNYFTFSGNKLTAFSGEMSYTWRNLHAFGELAANPGGGMA
                     GIAGLMANLDPRVDFSLLYRNIARNYASLYASAFTESTTPVNEKGLFTGMAIKPNRYF
                     RIDAYADIFSFPWVRYRVNRPSKGKEFLLQLSWRPNKQTEVYTRLRSENKAINLSNTN
                     GPFYETENVARQNWRTQVQYRVSSAITLRARAELMWYDQGGKQEEQGFLLFTDFFYKP
                     MSKPLVFNMRLQYFETDGYNSRIYAFENDVLYSFSIPVFYDKG"
     gene            complement(1887..>2234)
                     /locus_tag="VLL95_16025"
     CDS             complement(1887..>2234)
                     /locus_tag="VLL95_16025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40418.1"
                     /translation="NPFRATWGKDATERLPSRYSFGMGMDVSEKLFTGIDLIKEENQK
                     ADIQAGFHYSFLPQFFVRAGFATLITNYFFAFGFKMPAFRIDLSGSYHPQLGWSPGIL
                     LLAQFGKAKDEKE"
BASE COUNT          519 a          564 c          571 g          580 t
ORIGIN      
        1 cctttgtcat aaaaaacggg gatcgaaaaa ctgtacagta catcattctc aaaagcgtag
       61 atgcggctgt tgtaaccatc tgtttcaaaa tactgcaggc gcatattgaa gaccaatggc
      121 ttgctcatgg gcttgtaaaa aaaatcggtg aagagcagga aaccctgttc ttcctgtttg
      181 ccgccctggt cgtaccacat cagttcggcg cgggcccgca gggtgatggc gcttgatacc
      241 cggtactgca cctgtgtgcg ccagttttgc cgggccacat tttcagtttc gtaaaaagga
      301 ccgtttgtat tgctgagatt gatggctttg ttttcgctcc gaaggcgggt gtacacttcg
      361 gtttgtttgt tgggcctcca cgacaactgc aataaaaatt ccttgccctt gctcggcctg
      421 ttcacccggt atcttaccca cggaaaactg aagatgtcgg cataggcatc tatcctgaaa
      481 taacgattgg gtttgatggc catccctgta aacaatcctt tttcattgac gggtgtggtc
      541 gattcggtaa aggcactcgc atacaggctg gcatagttgc gggcaatatt tctgtagagc
      601 agggagaaat caaccctcgg atcaagattg gccatcaggc cggcaatacc ggccattccc
      661 ccacccgggt tggcggccag ttcgccaaag gcgtggaggt tgcgccaggt ataactcatt
      721 tctccactga aagcggtgag tttgttgcca ctgaatgtaa agtagttgta tggcaggctg
      781 tctttccgca atggcttgct caggctgaaa tgaatggcat tgacccctgc catgaacatg
      841 ccctttttgt aatgcaggcg gccgcccacc gaggactgcg taatgtttcg ccggtctgct
      901 gtttcactgc tggttcggtg gtacccgttg ttgagaatgc tgctcacata atcttcgttg
      961 tacactgaat ccacctctgc attggccgat actttttggc gggtggcaaa cgcagtaaac
     1021 gaccatggcc cctgccccag ggtgatggca gcccctctca atgaattgac ttcgccgggg
     1081 ctgttgtaag gccgcaatat ttcagtttgc cgtttgatgt tcatcacatc cacgcttttg
     1141 cgaaaaccca gcgactggta ggtgagcaag ccctgcccga ggttaagggt aaaatcgccg
     1201 atggccaatt gtttgatcac gcccaaattg cgcacaaaca ggtgaaagct gtagaaatca
     1261 aaacccttcg actgggcgcc tttgaaaaac tgctcccccg ggtccttttc gccgagcatg
     1321 ccaaactgca agaggttctt atacgtgtat ttgtaccgca acaacaaccg ttgcgggctg
     1381 ccaggatacg cagggggcaa agtatccttg ggcaaaaagc ccttcgattt ttgcagggtt
     1441 tgcgataccc gcatcagcaa cgaatgctcg ccttttgaaa agcgggtgtt catggtttcg
     1501 aacaaagtat aggctggccc caccattaca aatggcctga tgcgattgat ggtttccaca
     1561 tcccagcccg ggatggcctg caattcgtaa aagctgagca gcggccccat gagtcgccgg
     1621 tattgcagga acttctgtat ttgaaaatcg gtgaggaaac ggagcggctg caggtcgcct
     1681 tcagtagcat tgttgacatt cagcgggttg cgacggtaca attgaagttg ttggtaatat
     1741 gaatcgtctt ccgtttctgc ttcatcggct tcggcctggt tttccaattg ctgttcaata
     1801 gtggagtttt ggatttcctg tgccatggcc atctttccaa gcccaatgca taatatggcg
     1861 gtccaaaaca gtttcatccg gttggcttat tccttttcgt ctttggcttt tccgaactgt
     1921 gccagcaaca aaatgcccgg gctccagccc aactgcggat gatagcttcc ggacaaatcg
     1981 atgcggaaag ccggcatctt gaatccgaag gcgaaaaaat aattggtgat cagcgtggcg
     2041 aagccggccc gcacaaaaaa ctgtggcaaa aagctgtaat gaaaccccgc ctggatatct
     2101 gctttctggt tttcttcttt gatgagatcg atgccggtaa acaacttttc cgacacatcc
     2161 atgcccatgc caaatgaata ccgggatggc aaccgctcgg tagcatcctt accccacgtt
     2221 gccctgaaag gatt
//
LOCUS       DATIQF010000926         3101 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_121405,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000926 DATIQF010000000
VERSION     DATIQF010000926.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3101
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121405"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1309)
                     /locus_tag="VLL95_16030"
     CDS             complement(<1..1309)
                     /locus_tag="VLL95_16030"
                     /inference="COORDINATES: protein motif:HMM:NF013377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004555 - alpha,alpha-trehalase activity
                     [Evidence IEA];
                     GO_process: GO:0005991 - trehalose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalase family glycosidase"
                     /protein_id="HSR40419.1"
                     /translation="MKRLLYSLLAIMPAVAISQTVPTPDQLYGDLFHQVQMQRIFPDG
                     KTFVDCTPKRPVKDIMYDYGLQKGTGMNLKKFVEDNFELPKPPQLNYVTQEKDVVVHI
                     KNLWAVLKRNPDKHVEGSSLLPLPHPYIVPGGRFGEVYYWDSYFTMLGLKESGEVETI
                     QHMVDNFAYLINTYGHIPNGNRSYYLSRSQPPFFAMMVELLAGIKGKETYQQYIEPLQ
                     KEYTYWMRGASELKPGEAKLCVVKLPNGDVLNRYWDESDAPRQESYREDVLTADEYAS
                     EKMATMRFASKEAEEAMRQQLRIEAWHHLRAGAASGIDFSSRWFANPQQLHTIRTTDF
                     IPPDLNALMYQLETVLGRAFQISGNQAKSTSFYTKASKRAALIDKYCWNKKLGYYCDY
                     DVPNARVIDVVTPAGMYPFCVLPTPGLSTKTAAVARVLRTQLLK"
     gene            complement(1376..2530)
                     /locus_tag="VLL95_16035"
     CDS             complement(1376..2530)
                     /locus_tag="VLL95_16035"
                     /inference="COORDINATES: protein motif:HMM:NF022818.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3179 domain-containing (seleno)protein"
                     /protein_id="HSR40420.1"
                     /translation="MMNYKRLFWIALLLLVLFELANVYFIMPMPGSQQMNSLGFAYFL
                     YSWRWWFRTVLALSLFAGLFKTSWKRKWLPVLGLLPAGFILYVLNFQMAADRMFRPVQ
                     QLVMAPIASNKVDSNRLVIGVEWGNQSKAYPIRFLGYHHFLTDTIDGRPILVTYCTVC
                     RTGRVYDPVINGKTEAFRLVGMDHFNAMIEDASTGSWWQQATGEAVTGKMKGKKLNEI
                     FSTQTSLAEWMKENPNTLIMQEDPAFAHQYDTSLQYESGRSRKLLTGTDSSSWQRKSW
                     VVGIETGGSAKAFDWNALKASRLIQDTVGGTNILLVLSRDHQSFYAFQLPSPASAFSI
                     SNDTLQNGGLKYLLHGKSLGSHASLQPLAAYQEFWHSWQQFHPGTTRYPR"
     gene            complement(2613..>3101)
                     /locus_tag="VLL95_16040"
     CDS             complement(2613..>3101)
                     /locus_tag="VLL95_16040"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HSR40421.1"
                     /translation="EQIRIAQFWADGIGTYTPPGHWNAIACEDFVTMNMSEVRWARNL
                     ALLNTSLMDAAIACWDAKYFYFNPRPFQMDNRIKTVVGLPNFPSYTSGHSTFSGAAAT
                     VLGYIVPGRASAYQEMAKEASVSRLYGAIHYRSDCEQGLICGNRVGGFAVQRGQNDGA
                     GN"
BASE COUNT          713 a          766 c          826 g          796 t
ORIGIN      
        1 gtttcagcaa ttgggtgcgc aatactctgg caaccgctgc tgttttggtg ctcagccctg
       61 gtgtgggcaa tacgcagaac gggtacatgc ccgcgggggt caccacatct atcaccctgg
      121 cattgggtac atcgtagtcg cagtagtagc ccagtttttt gttccagcaa tacttgtcga
      181 tgagggcagc acgcttgctc gcttttgtgt aaaacgatgt tgatttagcc tggttgccac
      241 tgatttgaaa tgccctgccg agcactgtct ccaactgata catcagtgca ttgaggtcgg
      301 gaggtatgaa atcagtagtg cggatggtat gcagttgttg cggattggca aaccaacggg
      361 agctgaaatc gatgccgctg gcggcaccgg cacgcaggtg atgccaggct tcgatgcgca
      421 actgctggcg catggcttct tcggcttctt tgctggcaaa gcgcatggtg gccatttttt
      481 cgctggcata ctcgtcagcc gtcagcacgt cttcacggta gctttcctgg cggggcgcat
      541 cgctttcgtc ccagtagcgg ttcagcacat cgccgttggg cagcttcacc acgcacagct
      601 tggcttcccc gggtttcagt tcactggcgc cacgcatcca gtaggtatat tctttctgca
      661 ggggttcaat gtattgttgg taggtttcct tgcctttgat gccggccagc aactccacca
      721 tcatcgcaaa gaagggcggc tgcgaacgac tgaggtaata gctgcgattg ccattgggaa
      781 tatgcccgta ggtgttgatg agataggcaa aattgtcgac catgtgttga atggtttcca
      841 cttcgccact ttccttcagt cccagcatgg tgaaatagga atcccaataa taaacttcgc
      901 cgaagcgacc gccgggtaca atgtagggat ggggcagtgg caataaagaa ctgccttcca
      961 catgcttatc aggattgcgc ttcagtacgg cccacaggtt ttttatgtgc actactacat
     1021 ccttttcctg cgtcacataa ttcagctggg gtggtttggg caactcgaaa ttgtcctcta
     1081 caaatttctt caggttcatg ccggttccct tctgcaaacc ataatcatac atgatgtctt
     1141 tcaccggcct tttgggggtg cagtccacaa aggtttttcc gtcaggaaaa atgcgttgca
     1201 tttgtacctg gtgaaacagg tcgccatata gttggtcggg ggtgggcact gtttgtgaaa
     1261 tagcaacggc aggcatgatg gccagcagtg aatagagtag ccttttcata tggaattctt
     1321 ttggcaacga aagataaacc cggtgggcca atcaaaaaca gctttgggca tttgtttatc
     1381 tcgggtaccg ggtggtgccg gggtgaaatt gctgccagct gtgccagaat tcctggtagg
     1441 cggccaaggg ctgcaatgaa gcatgcgagc ccagtgattt gccgtggagg agatatttca
     1501 atccaccgtt ttgcaaagtg tcgttgctga tggagaatgc agaagcaggt gaaggcaatt
     1561 gaaaggcata gaaactttgg tgatcgcggg acaacaccag taatatattg gttccaccta
     1621 cagtatcctg gatgagtcgc gaagctttta acgcattcca gtcaaaggct ttggcgctcc
     1681 ctcctgtttc aatacctacc acccagctct tgcgttgcca gctgctgctg tcggtgcccg
     1741 tcagcaattt tctgctcctg ccactttcgt actgcaagct ggtatcatat tgatgcgcaa
     1801 acgccgggtc ttcctgcatg atcagcgtgt ttggattttc cttcatccat tctgccagcg
     1861 atgtttgagt gctgaagatc tcattgagtt ttttcccttt catcttgcct gtaacggctt
     1921 cgccggttgc ctgttgccac caactgcccg tgctggcatc ttcaatcatg gcattgaaat
     1981 gatccatgcc caccagcctg aatgcttcgg tctttccatt gatgacagga tcgtatacac
     2041 ggccggtgcg gcacaccgtg cagtaggtca ccaaaatggg gcggccatca atggtatcgg
     2101 tgagaaaatg atggtagcct aaaaagcgaa taggataggc ctttgattgg ttaccccatt
     2161 caacaccaat gaccaggcgg ttgctgtcta ccttattgga agcaataggt gccatgacca
     2221 gttgctgaac cgggcggaac atcctgtcgg cagccatttg aaaattgagt acatacaaaa
     2281 tgaagccggc cggcagcaag cccaaaacgg gcaaccattt tcttttccag gaagttttga
     2341 ataagccggc aaacagcgac aacgccaaca ctgttctgaa ccaccaacgc cagctgtaca
     2401 aaaagtaagc aaagccgaga gagttcattt gctggctgcc gggcatgggc atgatgaaat
     2461 acacattggc cagttcgaat agtaccagca gcagtaaggc gatccagaaa agacgtttgt
     2521 aattcatcat tgaaaaattt taaagaaggc cagcgtatgg aaatacgccg gccttgtatg
     2581 cttataaaca gaaaaataga atagagctga gatcagttgc cggcgccatc gttttgtccg
     2641 cgttgtaccg caaagccacc taccctgttg ccacaaatca aaccttgttc acagtcgctg
     2701 cgatagtgga tggccccgta gaggcggctt acactggctt cctttgccat ttcctggtag
     2761 gctgaggccc ttcccggcac tatgtagccc agcacagtgg cagccgcgcc gctgaaggtg
     2821 ctgtgcccac tggtgtatga aggaaagttg ggcaggccca ccacggtttt gatccggttg
     2881 tccatttgga aaggacgcgg gttgaaatag aaatacttgg catcccagca ggcaatggca
     2941 gcatccatga gtgacgtgtt gagcagtgcc aggttgcgtg cccagcgtac ttcgctcatg
     3001 ttcatggtta caaagtcttc acaggctatg gcattccagt ggccgggagg tgtgtaggtg
     3061 cctatgccgt cggcccagaa ctgtgcaatc ctgatttgtt c
//
LOCUS       DATIQF010000927         2960 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_136493,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000927 DATIQF010000000
VERSION     DATIQF010000927.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2960
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136493"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..656)
                     /locus_tag="VLL95_16045"
     CDS             complement(<1..656)
                     /locus_tag="VLL95_16045"
                     /inference="COORDINATES: protein motif:HMM:NF012662.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle receptor subunit
                     alpha"
                     /protein_id="HSR40422.1"
                     /translation="MGFFDKLFGKKEKQTLDEGLEKTKESFFSKITKAVAGKSSIDEE
                     VLDNLEEALVGADVGIETTVALIDKISDRVKRDKYLGTSDLNRIMQEEMADLLVDAPD
                     YLSSGFDLAGMPKPYVLLVVGVNGVGKTTTIGKLANQFKQAGKSVLLGAADTLRAAAV
                     DQLTIWSERVGVPIVKQAMGSDPASVAFDTVQSGMARGSDVIIIDTAGRLHNKVHLME
                     "
     gene            complement(789..962)
                     /locus_tag="VLL95_16050"
     CDS             complement(789..962)
                     /locus_tag="VLL95_16050"
                     /inference="COORDINATES: protein motif:HMM:NF025493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4295 family protein"
                     /protein_id="HSR40423.1"
                     /translation="MAKAASKNAKIKDAKAAAEAKNYTKVIKAVRSPKTGAYTFKEVI
                     MHKEKIKDFLAEK"
     gene            complement(1015..1203)
                     /gene="rpmG"
                     /locus_tag="VLL95_16055"
     CDS             complement(1015..1203)
                     /gene="rpmG"
                     /locus_tag="VLL95_16055"
                     /inference="COORDINATES: protein motif:HMM:TIGR01023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HSR40424.1"
                     /translation="MAKKSKGNRVQVILECTEHKNSGQPGTSRYITVKNKKNTPERME
                     LKKFNPILKKVTVHKEIK"
     gene            complement(1242..1478)
                     /gene="rpmB"
                     /locus_tag="VLL95_16060"
     CDS             complement(1242..1478)
                     /gene="rpmB"
                     /locus_tag="VLL95_16060"
                     /inference="COORDINATES: protein motif:HMM:NF013026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HSR40425.1"
                     /translation="MARVCQVTGKKPMTGHHVSHSNIKTKRRFNPNLQTKRFFLAEEN
                     KWITLKLTADAIRTINKKGLYSVVKELRANGVAV"
     gene            1832..>2960
                     /gene="rocD"
                     /locus_tag="VLL95_16065"
     CDS             1832..>2960
                     /gene="rocD"
                     /locus_tag="VLL95_16065"
                     /EC_number="2.6.1.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR01885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004587 - ornithine aminotransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine--oxo-acid transaminase"
                     /protein_id="HSR40426.1"
                     /translation="MATVDNHAVSSKTQYYLDLEDRFGAHNYHPIPVVIERGEGVFMY
                     DVDGNRYYDFLSGYSAVNQGHCHPRIIKALTQQAQKLTLTSRAFHSNLLGEYEKFITS
                     YFGYDKVLPMNTGVEGGETAIKLARRWGYVKKGIPENQARIVFAKGNFWGRTMAAISS
                     STDPSSYHNFGPFMPGFDLVEYNNIADLERALQDPHVAAFMVEPIQGEAGVVVPNEGY
                     LSKVRELCTQYNVLFIADEIQTGLCRTGKMLACDHENVRPDILVLGKALSGGVLPVSA
                     VLCDDFIMMNIKPGEHGSTYGGNPLACAVAMEALQVLKDERMAENAETMGQLLRSELD
                     KLQSPHISLIRGKGLLNAIVINHSNPEAAWDLCLELKQLGLL"
BASE COUNT          709 a          806 c          684 g          761 t
ORIGIN      
        1 tcctccatca ggtgaacctt gttgtgcagg cgaccggcag tgtcaatgat aattacatcg
       61 gagccacggg ccataccact ctgcacggta tcgaaagcca ccgaagcggg atcgctgccc
      121 atggcctgct tcacgatagg cacgcctacc ctttcgctcc aaatggtcag ctgatctaca
      181 gccgccgccc ttaaggtatc agccgcaccc aacagaactg atttacccgc ctgcttgaac
      241 tggttagcca gtttgccaat ggtggtggtc ttacctactc cattcacgcc taccaccaac
      301 agcacatagg gcttgggcat acccgccagg tcgaatcccg aggaaagata gtcgggggca
      361 tccaccagca ggtcagccat ctcttcctgc atgatccggt tgagatctga agtgccgagg
      421 tatttgtccc gcttgacacg gtcactgatt ttgtcaatca acgccaccgt ggtttcaatg
      481 cctacatcgg cacccacgag ggcttcttcc aggttgtcca gcacctcttc gtcgatgctg
      541 cttttgccgg ctaccgcctt ggtgatcttg gaaaagaaac tctccttggt cttttccaac
      601 ccttcatcca gcgtctgctt ttcctttttt ccgaacagct tatcaaaaaa tcccatgttc
      661 ttgaaattgt gcgctttctg caaatgatgt tccaaccttc cgggagttgc gaaccgtatg
      721 ctgcaaaaca aaaaagctat caaaccctac gcaggttgac agctcttata tcttcatccg
      781 ggagccaatt acttttcagc caggaagtcc ttgatctttt ctttgtgcat gatcacctct
      841 ttgaaggtgt aagcaccagt cttaggacta cgaacagcct tgattacttt ggtgtaattc
      901 ttggcttcgg cagcggcctt ggcatccttg attttcgcgt tttttgaagc agcttttgcc
      961 atattaaaaa agttgacagg ttaacgattg atttttgaca ggttacggca aggattactt
     1021 gatctccttg tgtacagtca ctttcttcag aataggattg aacttcttca gctccatgcg
     1081 ctcaggagtg ttcttcttat tctttacagt gatatagcgg ctggttccag gctggccact
     1141 gttcttgtgc tcagtgcact ccagaattac ctgcacccgg ttgcctttgc tcttctttgc
     1201 catgatattg aaagattttc agatgattaa acagaaactg attacacagc cacaccgttt
     1261 gcacggagct cttttaccac agaatacaaa cccttcttat tgatggtacg gatagcgtct
     1321 gctgtcaatt tcagggtaat ccacttattt tcttcggcca ggaagaaccg cttggtttgc
     1381 aggttcggat tgaaccggcg tttagtcttg atgttagagt gactaacatg atgacctgtc
     1441 attggctttt ttcctgtaac ctgacatact cttgccatga tcttaaattt tttcggacgg
     1501 caaaggtgca gtaaaccaac taaacaacaa aatgattttt aaacttttcc cagcctgttt
     1561 cagagtttgg gatttcctta aaactccatt ttcggcaggc agccccgcct ttttgtatgg
     1621 gcagcctgca ttttgcccga aaatgcgtta attgcagccg gattcatcgc aaatgtccag
     1681 aaatccaaac atatcattcc tgggaagcaa tctcgacttt ctcgaccacc cggccatctg
     1741 acggggggct ttctcccttc cttacttaca ggctattcta atttcaacaa ccagctgttt
     1801 tctccaggaa cacagcacaa aatctattcc attggctacc gttgacaatc atgctgttag
     1861 cagcaagaca caatattatt tggaccttga agaccggttt ggcgctcaca actaccaccc
     1921 catcccggtg gtcattgagc ggggcgaagg cgttttcatg tacgacgtag acggcaatcg
     1981 ctactacgac ttcctgagtg gctattcggc cgttaaccag ggccattgcc atccccgcat
     2041 catcaaagcg ctgacccaac aggcgcaaaa actcaccctg accagccgcg cctttcacag
     2101 caacctgctg ggtgaatacg aaaaattcat taccagctac ttcggttacg acaaggtgtt
     2161 gcccatgaat accggggtgg aagggggcga aacggccatc aaactggccc gccgctgggg
     2221 ctatgtcaaa aaaggcatcc ccgaaaacca ggcccgcatc gtatttgcca aaggcaattt
     2281 ctggggacgc accatggcgg ccatttccag cagcaccgac cccagcagct atcacaattt
     2341 cggccccttc atgcccggct tcgacctggt ggaatacaac aacatcgccg acctcgaaag
     2401 agccctccag gatccgcatg tggccgcctt tatggtagag cccatacaag gtgaagcagg
     2461 cgtggtggtg ccaaatgaag gatacctgtc gaaagtgcgg gaactctgca cccagtacaa
     2521 cgtgttgttc attgccgatg aaattcaaac cggtctttgc cgcaccggca aaatgctggc
     2581 ctgcgaccat gaaaacgtgc gccccgacat ccttgttttg ggcaaggcgc tcagtggtgg
     2641 cgtattgccg gtaagcgctg tattgtgcga cgatttcatc atgatgaaca tcaaaccggg
     2701 cgaacacggc agcacctacg gcggcaaccc gctggcctgt gccgtggcca tggaggcatt
     2761 acaagtattg aaagacgaac ggatggcgga gaatgccgaa acaatgggtc aattgttgcg
     2821 cagcgaactg gataagttac agagcccgca catcagcctc atcaggggca agggcttgct
     2881 caatgccatc gtgatcaacc acagcaaccc cgaagcagcc tgggatcttt gcctggaact
     2941 gaaacaactg ggtttgctgg
//
LOCUS       DATIQF010000928         2603 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_90565, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000928 DATIQF010000000
VERSION     DATIQF010000928.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2603
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90565"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            159..>2603
                     /gene="uvrA"
                     /locus_tag="VLL95_16070"
     CDS             159..>2603
                     /gene="uvrA"
                     /locus_tag="VLL95_16070"
                     /inference="COORDINATES: protein motif:HMM:TIGR00630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HSR40427.1"
                     /translation="MKSTKNLPAPSESTTYERSDGIFIKGARTHNLKNIDVFIPRNQL
                     VVVTGVSGSGKSSLTIDTLFAEGQRRYAESLSSYARQFMQRMNKPDVDYIKGLCPAIA
                     IEQKVITRTPRSTVGSMTEIYDYLRLLYARIGHTISPVSGREVRKDDVADVRRAIQAL
                     SEGDKVLLLVVFKKHAKRNTKEELNILLQKGFTRVYADGNTFRIEDLLENDADLKEFE
                     KTATPSTPAYVLVDRLVMRAFDEDDWHRISDSIDTAFYEGEGSCLLEANGEKQIPFSN
                     KFELDGLEFEEPVPNLFSFNNPFGACPVCEGFGQVLGIDPDLVIPDKRLSVYEGAIAP
                     WRGEKLGEWHTALIRAAGRSKFPIHKPIHDLSEAEYKMLWTGSEYFDGLNAFFKEVEQ
                     NLYKVQYRVLLSRYRGRTTCHECGGYRLRKEALYVKIGGKQIGELCEMPIKDLHQWFS
                     GLQLSEFDQEVGKRLLIEIDLRLKTMLDVGLGYLTLNRLANSLSGGESQRIQLTRSLG
                     SNLTNSLYILDEPSIGLHSRDTERLIKVLKHLRDLGNTVVVVEHDEMMMREADYIIDM
                     GPLASHMGGEVVAAGNYDQLVDNPKSLTGQYLKGALTITGKKQTGKWKKQITVHGARQ
                     NNLKNIDVSFPLGVLTVVSGVSGSGKTTLVKQILYPALQKLKGEFGDKVGAHRLIDGD
                     IESITAIEMVDQNPIGKSSRSNPVTYVKAWDPVRDLYASQPLSKIRGFQPKHFSFNVD
                     GGRCDTCKGEGEQIVEMQFLADVHLTCESCKGKRFKDEVLEVTYQEKSIFDVLEMSVD
                     EAIAFFADQKAILSAIQ"
BASE COUNT          715 a          668 c          659 g          561 t
ORIGIN      
        1 cttgttgggt actattttgt ttcggctgca aaaattatgc taaaacaaaa aagttccgaa
       61 ttctgttagc tataccttcg acatccagcc agcaagaatc tagttgctgt ttagacatca
      121 aagtttaagc aagctaaaca attcttcaga aaattcccat gaaatccaca aaaaatcttc
      181 cggctccctc agaatcaaca acttacgaaa gaagtgacgg cattttcatc aagggagcac
      241 gtacccataa cctcaagaac atcgatgttt tcattccccg gaatcaattg gtggtcgtaa
      301 ccggggtgag cggttccgga aaatcgtccc tcaccatcga cacccttttt gcggaaggcc
      361 agcgccgcta tgctgaaagc cttagttcct atgcccgaca gtttatgcag cgcatgaaca
      421 agccggatgt ggattacatc aaaggcctct gccccgccat cgccatcgaa cagaaagtga
      481 tcacccgcac cccccgcagc accgtgggca gcatgacgga gatttacgat tacctgcgcc
      541 tgctctatgc ccgtattggc cacaccattt caccagtcag tggtcgggaa gtacgcaagg
      601 atgatgtggc cgatgtgcgc cgtgctatcc aggctttgtc ggagggcgac aaagtgttgc
      661 tgctggtggt tttcaaaaaa catgcgaagc gcaataccaa agaagaactc aatatcctgt
      721 tgcaaaaggg tttcacccgg gtatatgccg atggcaatac tttccgcata gaagacctgc
      781 ttgaaaatga tgccgacctg aaggaatttg aaaaaacggc taccccctcc accccagcct
      841 acgtgctggt ggatcgactg gtgatgaggg cgtttgatga agacgattgg caccgcattt
      901 ccgactctat tgacactgcc ttttatgaag gtgaaggcag ttgcctgctg gaagcgaatg
      961 gcgaaaaaca gatccccttc agcaacaagt ttgaattgga tggtcttgaa ttcgaagaac
     1021 cggtgcccaa cctgttttca ttcaacaatc cctttggcgc ctgcccggtt tgcgaaggct
     1081 tcggccaggt gctgggtatt gatcccgatt tggtaattcc tgacaaacgc ctgagtgtgt
     1141 acgaaggagc cattgcccct tggcgtggcg aaaaactggg tgaatggcac acggcactca
     1201 tccgggcagc cggtcgttcc aaattcccca ttcacaagcc catccacgac ctgagcgaag
     1261 cagaatacaa aatgctctgg accggcagtg aatatttcga cgggctgaat gcctttttca
     1321 aagaggtgga gcaaaacctt tacaaagtgc agtaccgtgt gctgctgagc cgctaccgcg
     1381 gacgtaccac ctgccacgaa tgcggaggat accgcctgcg caaagaagcg ctgtacgtaa
     1441 aaatcggcgg taaacagatt ggtgagttgt gcgaaatgcc catcaaagat ttgcaccaat
     1501 ggttctccgg tttgcagctg agcgaatttg accaggaagt aggcaaacgc ctgctgattg
     1561 aaattgacct tcgcctgaag acaatgctcg atgtgggcct gggctacctc actctcaacc
     1621 gactcgccaa ctcgctgagt ggcggcgaaa gccagcggat ccaactgacc cgttcattag
     1681 gcagcaatct caccaactcg ttgtacatac tcgatgagcc atccattggc ctgcacagcc
     1741 gcgataccga aagactgatc aaagtattga aacacctgcg tgacctgggc aatacagtgg
     1801 tggtggtgga gcacgatgaa atgatgatgc gggaagccga ttacatcatc gacatgggcc
     1861 cactggccag ccatatggga ggtgaagtgg tagctgccgg caactatgac cagctggtcg
     1921 ataacccaaa aagcctcacc ggccagtacc tgaagggcgc cttgaccatt accggcaaga
     1981 aacaaacggg caaatggaaa aaacaaatca ccgtgcatgg cgcccggcaa aacaatttga
     2041 agaacattga tgtcagtttt ccactgggcg tactcacggt ggtgagcggc gtaagtggca
     2101 gtggcaaaac cacactggtg aagcagatcc tataccctgc tttgcaaaaa ctgaaaggcg
     2161 aattcggcga caaagtgggg gctcaccgat tgattgatgg cgatattgaa agcattaccg
     2221 ccattgaaat ggtagaccaa aaccccattg gcaaaagcag ccgcagcaac ccggttacgt
     2281 atgtaaaagc atgggacccg gttcgcgacc tctatgcctc tcaaccactg agtaagatcc
     2341 gcgggttcca acccaagcat ttcagcttta atgtggatgg tggccgctgc gatacctgca
     2401 aaggcgaagg cgaacagata gtggaaatgc aattcctggc cgatgtacac ctcacctgcg
     2461 aaagctgcaa aggcaaacgc ttcaaagacg aagtgctgga agtaacctac caggagaaaa
     2521 gcattttcga cgtgctcgaa atgagtgtgg atgaagccat cgccttcttt gccgatcaga
     2581 aagccatatt gagtgccata cag
//
LOCUS       DATIQF010000929         5300 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_30066, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000929 DATIQF010000000
VERSION     DATIQF010000929.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5300
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30066"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(119..1657)
                     /locus_tag="VLL95_16075"
     CDS             complement(119..1657)
                     /locus_tag="VLL95_16075"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HSR40428.1"
                     /translation="MSLFAKKPLDQLLAQAADSEKGLKRTLGAGNLVALGIGAIIGAG
                     LFVRTAAAAGQAAGPGVTISFIIAAIGCAFAGLCYAEFAAMIPIAGSAYAYSYVTMGE
                     MIAWIIGWALIMEYALGAATVSIAWSEYLNKLLGGSIPYEWCHSPFESFTDSAGVMHQ
                     GIINAPALVILLLLTLLLIKGTQESAMVNAVIVFIKVAIVLLFIAIGWQFIKPENHTP
                     YIIPEGTKPVLDAAGKELVNYDGFFKHGWGGILGGAAIVFFAFIGFDAVSTAAQEAKN
                     PKRDMPIGILGSLVVCTILYILFGHVLTGVANWQEFVDPEKGREASVAYAISQYMTGY
                     GWLATAVTVAILAGFSSVILVMLMGQSRIFYTMANDGLIPKAFGELHPKFKTPYKANW
                     ILFVFVGAFAAFVPGHVAGDLTSFGTLFAFVLVSLGVWIMRRKSPGIERPFKTPLVPL
                     VPILGAVICTGMIVAIDQRTLFVAFIWMIVGLFVYFLYSRKHSKLNIPMKDILPTADD
                     FEKH"
     gene            1850..3118
                     /locus_tag="VLL95_16080"
     CDS             1850..3118
                     /locus_tag="VLL95_16080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40429.1"
                     /translation="MDYFIFIFWLLAFVWLVWKTPFFRKHQLNPWLMAGLFILKVAAG
                     AAYAWLFSRLPEYQAKVDTWRYFYQSLPETRWLLEDPAAFFADLVTPRYEQDGGLLAT
                     QNSLLNDLKEVLVIKFMAICNVLSGGRYYVNLIFFNYLVLFGIAGFGLLWARFFRVSR
                     PTLMVAAIALWPSVLFWSSGFHRDGLLLLGVGATLWLAWRVSLQPNWTNVVGLIVVFL
                     FLFLLRNYLALFVAIAVALAAVVYYRPLQAKWMLPVAIVSGLVIVLALGGLYPDYALP
                     HLLARRQQEFLGLQGGSLQAPLPLDDGWLSLLRSLPEALRRAFAAPLPGPGLKTTEWL
                     SAMENVVWLVSILPAVWRGRHRAKTPSQKAWMVLAVSLVLAVGIITGLTIPFVGAIAR
                     YKSIIWPLMAPPVVYWWYHLISKKGMRKTA"
     gene            3190..4548
                     /locus_tag="VLL95_16085"
     CDS             3190..4548
                     /locus_tag="VLL95_16085"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase family protein"
                     /protein_id="HSR40430.1"
                     /translation="MTVSEIQALLQQRQSGKVKFAFTDVDGVLRGKIISVQKLLDVLE
                     HGSGFCDVVFGWDVNDQLYAEGVQLTGWHTGFPDQFCRIDLQTFRNIPWQNEMPFFIA
                     DFEGSKAGDHACPRSLLKRIAGQAAEMGYVPRFSQEFEWFNFAETPASLAAKQYQTPT
                     PLTPGMFGYSVLRPSQHYDFNKALFDQLTSFGVPLEGLHTETGPGVYEAAIHHDVVLA
                     AADKAALFKAGVKEIASQFGIMASFMAKWNQQLPGCSGHLHQSLWDEGQQRNLFFDGS
                     DTHQMSALQQHYVAGLLYCLPHLMPMYAPTINSYKRLVEGAWAPTTISWGIENRTSAV
                     RIINHHEKGARAELRVPGSDSNPYLAMAAALASGLYGIRNKIPLRLKMTEGNAYANEG
                     NLPLHSNLLDATHAMQQSALAKELLGEAFVDHFTATRLHECRQYNNAVTDWELKRYFE
                     II"
     gene            4612..>5300
                     /locus_tag="VLL95_16090"
     CDS             4612..>5300
                     /locus_tag="VLL95_16090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40431.1"
                     /translation="MTIDYNQIIQKAWEGYDASRKIASIEDLSVYVSTNRVCKVIFTD
                     GDYIIAKASSYGKYEFFKEYHRIIHSLANNLLYPFENLLAKSLVKNNRVYLYRHKKGK
                     ADVWVVFYNPTRVMERLPRRLDEAHIKSLAKQMAKFHLACSRIKNVLPKSSKTLRTDI
                     SALIHDVDRNPKTFGSRMHADLIKYHCEQFLKNRLKCNVGVFELMPVFIDWNIGNFSV
                     INKFELFSRWD"
BASE COUNT         1271 a         1369 c         1388 g         1272 t
ORIGIN      
        1 gtcatctgca tgcgcagcac atccgtcggt ttttacgcag cgtttgctgc tttgggctgc
       61 aaatgtaaag ggtagctcga agcaaaaaaa aaccgctctg gggagcggtc ttttttcttt
      121 agtgcttttc aaagtcatct gccgtgggca ggatgtcttt catgggaata ttgagcttgc
      181 tgtgttttct gctgtacagg aaatacacga acagaccaac gatcatccag ataaatgcca
      241 caaacagggt gcgctggtca atggccacga tcatgccggt acaaataacc gctcccaaaa
      301 ttggaacgag gggtaccagc ggtgttttga acggacgctc aatgccgggg ctcttgcggc
      361 gcatgatcca cacgccgagg cttaccagca caaaggcaaa cagggtgccg aagctggtga
      421 ggtcgccggc aacgtggccg ggaacgaaag ccgcaaaggc gcctacaaat acaaacagga
      481 tccagttggc cttgtaaggc gttttgaact tgggatgcag ctcgccaaat gccttgggga
      541 tgaggccgtc attggccatg gtatagaaaa tgcggctttg gcccatcagc atcaccagta
      601 tcaccgagga gaaaccagcc aggatggcta ccgtaaccgc tgtggccagc cagccataac
      661 ccgtcatgta ctgcgaaatg gcataggcta cagatgcttc gcggcctttt tcaggatcca
      721 cgaattcctg ccagttggcc acccctgtaa gaacatgtcc gaagaggata tacaaaatgg
      781 tacaaaccac cagcgagcca aggataccga ttggcatgtc gcgtttaggg ttcttggctt
      841 cctgcgctgc ggtgcttacc gcatcgaaac caatgaaagc aaagaatacg attgccgcgc
      901 cgccgagaat gccaccccag ccgtgtttga aaaagccatc gtagttcacc agttctttgc
      961 cggcagcatc cagtacaggc ttggtgcctt cggggatgat gtacggcgta tggttttcag
     1021 gcttgatgaa ctgccagcca atagcgatga acagcagtac gatggctact ttgatgaata
     1081 cgataacggc attcaccata gcgctttcct gcgtgccttt aatgagcaac aaggtgagta
     1141 acaagagaat taccaatgcg ggtgcattga tgataccctg gtgcattacc cccgctgagt
     1201 ccgtaaagct ctcaaacggg gaatggcacc attcataggg tatggagcct cccagcaact
     1261 tatttaaata ttcactccag gcaatactaa cggtggcggc acccagggcg tattccatga
     1321 tcaacgccca gccaatgatc caggcaatca tttcgcccat ggtcacatag ctgtaggcat
     1381 aggcgctacc ggcaatgggg atcatggcag caaattcggc atagcacaaa ccggcaaagg
     1441 cacagccaat ggcagcaata atgaacgaaa tggtaacacc aggaccggca gcctggccgg
     1501 ccgcagcagc agtacgaaca aacaaaccgg caccgatgat ggcaccaatg cccagggcca
     1561 ccaggttgcc tgcacccaac gtacgtttca atcctttctc cgaatcggca gcctgagcca
     1621 gcaattggtc aagcggtttc ttcgcaaata agctcataag ctaaatgtgt aatggttgat
     1681 ttaaaaagag gcggaaaaat agagaataat ggaatatagg acggttttaa ttggatactc
     1741 cagttttgac cggctgattt ggtttgccta accatttctc cgctcacttc ctcccttcat
     1801 taattatttc agcatcaatt acctttcccc cggttataac atctgaaagt tggactattt
     1861 catcttcata ttctggctgc tggcatttgt ttggctggtt tggaagaccc cgtttttccg
     1921 aaagcaccag ctgaatcctt ggttgatggc cggcctgttt attctgaaag tggcggcagg
     1981 tgcagcctat gcctggctct tcagccgcct gcccgaatat caggccaaag tggacacctg
     2041 gcgctatttc taccaaagcc ttccggaaac aaggtggctg ctggaggatc ccgcagcttt
     2101 tttcgctgac ctcgtaacac cccgctacga acaggatggc ggcctgctgg ccacccaaaa
     2161 cagccttttg aacgatctga aggaagtact ggtcatcaag ttcatggcca tctgcaatgt
     2221 gctgagtggt ggccgatatt atgtcaacct gattttcttt aactacctcg tgttgtttgg
     2281 catagcgggg tttggcctgc tctgggcccg gtttttcagg gtgagccgac caacccttat
     2341 ggtggctgcc attgcgctgt ggccatcggt gctgttctgg agcagcggtt ttcaccgcga
     2401 tggcttgttg cttcttggcg tgggcgccac actctggctg gcgtggcggg tgagcctgca
     2461 acccaactgg accaacgtgg taggcttgat agtcgttttc ctctttttgt ttttgctgcg
     2521 caattacctg gcgctgtttg tggccatagc ggtggcattg gcggcagtgg tttattaccg
     2581 tcccctgcag gccaaatgga tgttgcctgt cgccattgta tcgggtttag tgatagtgct
     2641 ggcactgggc gggttgtatc ccgattatgc gctgccacat ttgctggccc gccggcagca
     2701 ggagttcctg ggtttgcaag gtggctcgtt acaggcgccc ttgcctttgg atgacggatg
     2761 gctttcgtta ctgagatcat tgcctgaagc tttgcgccgg gcctttgccg caccgctgcc
     2821 tggccccggg cttaaaacga ccgaatggtt gtcggccatg gaaaatgtgg tatggctggt
     2881 tagcatactg cccgccgttt ggaggggccg ccaccgggca aaaacgcctt ctcaaaaagc
     2941 gtggatggtg ctggcggtat cgctggtgct ggcagtgggc atcatcaccg ggctcaccat
     3001 tcccttcgtg ggtgccattg cccgttacaa aagcatcatt tggccgctga tggcgccacc
     3061 ggtggtttac tggtggtatc atctcatcag caaaaaaggg atgaggaaga ccgcctgaca
     3121 aggaccgctt cttcccccat gctcaattca cttaatttta gtcagtttct tttttgaatg
     3181 aatcatacca tgacagtatc tgaaatacaa gccttgctac aacagcgcca gtcgggcaaa
     3241 gtgaaattcg cttttaccga tgtggatggg gtgttgcggg gcaagatcat atctgtgcaa
     3301 aaactgctcg acgtgctgga gcatggcagt ggtttttgcg atgtggtttt tggctgggac
     3361 gtgaacgatc agttgtatgc ggaaggggtt cagctcacgg gctggcacac cggtttcccc
     3421 gaccagtttt gccgcatcga tctgcagacc ttccgcaata ttccctggca aaacgaaatg
     3481 ccatttttca ttgccgattt tgaaggcagc aaggcgggcg accatgcctg ccctcgaagc
     3541 ctgctcaagc gcatagccgg ccaggccgcc gaaatgggat atgtgccccg tttttcacag
     3601 gaatttgagt ggttcaattt cgcagaaacg cccgcctccc tcgccgccaa gcaataccag
     3661 actcccacgc cccttacacc ggggatgttt gggtattctg ttttacggcc atcacagcat
     3721 tacgatttca acaaggccct gttcgatcaa ctcacttcgt ttggggtgcc attggagggc
     3781 ttgcatacag agaccggccc cggcgtgtac gaagccgcta ttcatcacga tgtggtgctg
     3841 gcagccgctg acaaggcagc cttgttcaaa gccggcgtca aagagatagc atcacagttt
     3901 ggcatcatgg catccttcat ggccaaatgg aaccaacagt tgccgggttg cagcggacac
     3961 ctgcaccaga gtctttggga cgaaggccag cagcgcaatt tgttttttga tggaagtgac
     4021 acccatcaaa tgagcgcact gcagcagcat tatgtggcgg gcttgctgta ttgcttgcct
     4081 cacctcatgc ctatgtatgc gcctacaatc aacagctaca agcgattggt agaaggagcc
     4141 tgggcgccca ccaccatttc gtggggcatc gaaaacagga cctcggcggt gcgcatcatc
     4201 aatcatcatg aaaagggcgc ccgtgcagag ctgagggtgc ccggatctga cagcaatccc
     4261 tacctggcca tggccgccgc attggcatcc ggcttgtatg gcatccgtaa taaaataccc
     4321 ctgcggctga aaatgaccga agggaatgct tatgccaatg aaggcaattt gcctttgcac
     4381 agcaacctgc tggatgccac tcatgccatg caacaatcgg ctttggccaa agaactgctg
     4441 ggtgaggcat ttgtagatca cttcaccgcc acccgcctgc acgaatgccg gcagtacaac
     4501 aacgccgtta cagactggga gttgaaacgg tattttgaaa tcatctagcc ttctttattc
     4561 acacacattt gttgacatga gcaacaatac atcgacaacc tgagcattcc catgaccatt
     4621 gactacaacc agattataca aaaagcctgg gagggctatg acgcttcacg gaaaattgct
     4681 tccattgaag acttaagcgt atatgtaagc accaaccgtg tgtgcaaagt catttttacg
     4741 gatggcgatt acattattgc caaagcatcg agctatggca agtacgagtt tttcaaagag
     4801 taccaccgca tcatccactc gctggccaac aacctgttgt atccttttga aaacctgttg
     4861 gccaaaagcc tggtgaaaaa caaccgcgta tacctctacc ggcacaaaaa aggcaaggcg
     4921 gatgtctggg tggtgtttta caatcctacc cgggtgatgg agcgattgcc ccgccggctt
     4981 gatgaggcac atataaaaag cctggccaaa cagatggcca agtttcacct ggcttgcagc
     5041 cgtatcaaaa atgtattgcc caaaagcagc aaaacactgc gtaccgacat tagtgcactg
     5101 atacacgatg tggatcggaa tcctaagact tttggcagcc gcatgcatgc cgatttgatc
     5161 aagtaccatt gcgagcagtt cctgaaaaac aggttgaagt gtaatgtggg agtttttgaa
     5221 ctgatgccgg tattcatcga ctggaacatt ggcaactttt cagtgatcaa caagtttgaa
     5281 ctgttcagcc gctgggacta
//
LOCUS       DATIQF010000930         3274 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_90597, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000930 DATIQF010000000
VERSION     DATIQF010000930.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3274
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90597"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1204)
                     /locus_tag="VLL95_16095"
     CDS             complement(<1..1204)
                     /locus_tag="VLL95_16095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40432.1"
                     /translation="MAQKAFDYSAAWNEVDSLIQKNLPKSAITLTDKIFAQAKKEKKD
                     SQLLKAFVVKSSLVQQLDENAFEKTVAEIDKVAATAAEPSLSILASIKADFYWNRFQS
                     ERWKIYGRAAMAKPDLKKHDTWDANTWHQQIALLYKQSIQNKTILQKIPVQDFEPIII
                     KGNARQLRPTLYDLLAHKALEYFENEETEITKPVYAFELNDEASLDAADQFTAKTYDS
                     KDSSSHLLQAIRIYQELVKFHRKDANPAAFIDVDLQRLQFAYDHNVNPYKSRLYKQTL
                     ESIYTAYKTLPEGAQAGYLLASWWKEKGDNYNAATGTAEDKMAYVKAMETATAAAKAF
                     PDSEGGINAQNLLNELQQWHLRVQVEKVNTISQPFRAHVSFNNINAVHFRLIALDNKE
                     DYGYFDDLA"
     gene            complement(1394..2266)
                     /gene="sucD"
                     /locus_tag="VLL95_16100"
     CDS             complement(1394..2266)
                     /gene="sucD"
                     /locus_tag="VLL95_16100"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF004230.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HSR40433.1"
                     /translation="MSVLVNKDSKIIVQGFTGTEGTFHASQMIEYGSNVVGGVTPGKG
                     GSTHLDRPVFNTVADAVKSTGANVSIIFVPPAFAADAIMEAAEAGIALVVCITEGIPV
                     QDMVKVKSYLQGTKTRLIGPNCPGVITAEECKVGIMPGFIFKKGNIGIVSKSGTLTYE
                     AADQVAKAGLGITTAIGIGGDPIIGTTTKEAVELLMNDPATEGIVMIGEIGGGMEAEA
                     ARWIKENGTKPVVGFIAGQTAPPGRRMGHAGAIVGGADDTAAAKMKIMAECGIHVVAS
                     PADIGKTMAAALKK"
     gene            complement(2353..3156)
                     /locus_tag="VLL95_16105"
     CDS             complement(2353..3156)
                     /locus_tag="VLL95_16105"
                     /inference="COORDINATES: protein motif:HMM:NF022135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4198 domain-containing protein"
                     /protein_id="HSR40434.1"
                     /translation="MRPSKVKLAISTFLLLAFSIMATAHEFWLEPVSFWGPRMVIRLK
                     VGEHYSGENWKGDYSKVRKLHILNHAEVVVLDPTYWLEKPGDSLRIESPFSGTQTLIF
                     NSTNSFIQLGADEFNAYLKEDGLADIMAWRKSNHKDTSGAREYYQRSVKTLLQNGSSL
                     TPVNYPTQLPLDIVPLSNPYALKAPGTVNFTVYFQQRLLREGLIKAWHISKEGKLTQQ
                     DIQLKEGSFSLDVAPEGKWMVSMVKMVPHTADATADWQSYWASCTWGYF"
BASE COUNT          760 a          768 c          820 g          926 t
ORIGIN      
        1 aggccaggtc atcgaagtag ccatagtctt ccttgttatc caatgcaatc aaacgaaaat
       61 gaactgcatt gatattattg aacgatacat gcgccctgaa tggctggctt atggtattca
      121 ctttttccac ctgcaccctc aggtgccatt gctgcaattc gttcagcagg ttttgcgcat
      181 tgataccgcc ttcactatcg gggaaagcct tggctgcagc agtcgctgtc tccatggctt
      241 ttacataagc catcttgtct tctgctgtac cggttgcggc attgtagttg tcgccttttt
      301 ccttccacca cgatgccagc aaataaccgg cctgtgcgcc ttcgggcaaa gtcttgtatg
      361 cggtatagat cgattcgagg gtttgtttgt acaggcggct tttgtaggga ttaacgttgt
      421 ggtcgtaagc aaactgcagt cgctgcagat cgacgtcaat gaaagcggcg gggttggcat
      481 ccttgcgatg aaacttcacc agctcctggt aaatgcggat ggcttgcaac aaatgactgc
      541 tgctgtcttt actgtcgtaa gtctttgcgg tgaattgatc agcggcatca aggctggctt
      601 catcattcag ttcaaatgca tagacgggtt tggtgatctc cgtttcttca ttctcaaaat
      661 attccagcgc tttgtgtgcc agcaaatcgt acaaggtggg acgcagctgc cttgcattgc
      721 cttttataat gatgggttca aaatcctgga caggaatttt ttggagaatt gttttgtttt
      781 gaatggactg tttgtacaac aacgcgattt gctggtgcca ggtgttggcg tcccaggtat
      841 cgtgtttctt caggtcaggt ttggccatgg ccgccctgcc gtagatcttc catctttccg
      901 attgaaaacg gttccagtaa aaatcggctt tgatgctggc caggatggaa agggaaggtt
      961 ctgcagcggt tgctgccact ttatcgattt cagctactgt tttttcaaaa gcattttcat
     1021 ccagttgctg taccagcgaa ctcttgacca caaaagcctt cagcagttgc gagtccttct
     1081 tttctttttt tgcctgcgca aaaattttat cggtaagtgt gatggccgat ttgggaaggt
     1141 ttttttggat aaggctgtcc acctcgttcc aggctgctga ataatcgaat gctttctggg
     1201 ccattgctaa ttgaatagtg aggagtgaaa taacgaccag aacaagcctg ttgtaaagca
     1261 ttgaagatgg tttattgtaa agtaatcaaa cagcgctgaa tcaaaagatg attaacaggg
     1321 caataatgca taacgatgcg cataaaaaag ccggcaggaa gccggcttaa catttagttt
     1381 ttcaaagttg ctgttacttt ttgagtgcag cagccattgt ttttccgata tcggcagggc
     1441 tggccactac atgaatgcca cattctgcca tgatcttcat tttggcagca gcggtatcat
     1501 ctgcgccgcc cacaatagcg ccggcgtggc ccatgcggcg accgggagga gcggtttggc
     1561 cggcaataaa accaaccaca ggcttggtgc cattttcttt gatccagcgg gctgcttcgg
     1621 cttccatgcc gccaccaatt tcaccaatca tcacgatgcc ttctgtggca gggtcgttca
     1681 tcagcaattc cacggcctct ttggtagtgg tgccaatgat ggggtcgccg ccaatgccaa
     1741 tggctgtagt gatgccgaga ccagccttcg ccacctggtc ggctgcttcg taggtgaggg
     1801 taccgctctt gctcacaata ccgatgttgc ctttcttgaa gatgaagccc ggcatgatgc
     1861 ccactttaca ttcttcggca gtaattacgc cggggcagtt ggggccaatc agcctggttt
     1921 tggtaccctg caggtagctt ttcactttca ccatgtcctg cacaggaatg ccttcagtaa
     1981 tacaaaccac cagggcaata cccgcttctg cggcttccat tattgcgtca gcggcgaatg
     2041 ccgggggcac aaaaatgatg ctcacgttgg cgccggtgct ctttacggcg tcggccacgg
     2101 tattgaaaac agggcggtcg agatgggtgc tgccaccttt gcccggggta acaccgccta
     2161 ccacgttcga accatattca atcatttggg aggcgtggaa ggtgccctcg gtaccggtaa
     2221 agccctgtac aattattttg gagtctttgt ttactaaaac gctcatggca attatttaag
     2281 acgtggttga aaaagtggtg caaaagtagg ggttggggac agaaatgcca gttttgaaat
     2341 gcggcaatac tgctaaaaat aaccccaggt gcagctggcc caatagctct gccagtcggc
     2401 agtggcatcg gcggtgtgcg gcaccatttt taccatgctc accatccatt tcccttcagg
     2461 ggctacatcc aatgaaaaac tgccttcctt caattggata tcctgctggg tgagtttgcc
     2521 ttccttgctg atgtgccagg cttttatcag tccttcccgc agcagccttt gttggaaata
     2581 caccgtgaaa ttgacagttc ccggtgcttt aagggcataa ggattggaaa gtggaacgat
     2641 atccaaagga agttgcgtag gataattcac gggagtaagc gaactgccat tttgcagcag
     2701 cgttttcacg cttcgctggt aatattccct ggcgccggag gtgtctttat ggttggattt
     2761 ccgccaggcc atgatgtctg caagtccatc ttctttcaga taggcattaa actcatcggc
     2821 gccaagttgt ataaaactat tggtgctgtt gaagatcagt gtttgtgttc ctgaaaaagg
     2881 agattcaatt cgaagggaat cgccgggttt ttcaagccag tatgtcggat caagcaccac
     2941 aacttcggca tgattaagta tatgtaattt tcgaactttg ctatagtcac ctttccagtt
     3001 ttcgccgctg taatgctctc caactttcag gcgaatgacc atcctgggac cccaaaatga
     3061 aaccggctcc agccaaaatt catgggcagt ggccattatt gaaaaggcca gcaatagaaa
     3121 agtgctgatg gccaatttaa cttttgatgg gcgcatatta tgattgattc ggatcgggag
     3181 gtaattggcc tttggcttcg agcatgcgca ggtgtttggc atcctgcaaa aactcactcg
     3241 caaaaatgaa actgttcagt ttttcatctt cact
//
LOCUS       DATIQF010000931         1754 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_136538,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000931 DATIQF010000000
VERSION     DATIQF010000931.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136538"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            266..793
                     /locus_tag="VLL95_16110"
     CDS             266..793
                     /locus_tag="VLL95_16110"
                     /inference="COORDINATES: protein motif:HMM:NF014038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class IV adenylate cyclase"
                     /protein_id="HSR40435.1"
                     /translation="MSKHLNVEIKARCAHLDEARKVLQELGADYKGTDHQTDTYFVVP
                     NGRLKLRQGNIENALIFYHRENAATPKGSQVNMIQVQEGEALKSLLTEALGVKVEVKK
                     SREIYFIDNVKFHLDQVAPLGTFAEIEAIDKTGTLGADHLQKQCEHYMQLLRIAPGDL
                     LSHSYSDMLMDKKPG"
     gene            complement(797..>1754)
                     /locus_tag="VLL95_16115"
     CDS             complement(797..>1754)
                     /locus_tag="VLL95_16115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40436.1"
                     /translation="ALAEGLYVKLVLLPDGEDPDSYVRKVGKEDFNEYIQQNKKDFIL
                     FQTEVSLKEAGNDSQKRSEVVNRIAESISKIDKAEDFSRQQDYIRQTASLLKVDEDGL
                     INLVNKFIRERLQREQRKQQNEQSQVIDLTNAPEEEIEASLTFLISNELQERAVLKCL
                     LVYGLLPMNDKETVATFIFHALEDFHFDNAELEQLYLLYKGWYEAGLQPTEKSFVYYP
                     DEKINRLVISLLEFPYELSPKWEELIQGKKADEIDQSVKDTTRSVHYFKLRKLKQMLE
                     QTQQDLEKEKDPEIQTQLIELHMELKRFERDITQVLGTVILK"
BASE COUNT          410 a          423 c          442 g          479 t
ORIGIN      
        1 cataccggtg cgcatggtaa gctatggtgg cagccgtcac aacgtgagcc tgctggtgcc
       61 atcagccagc aaaaccgcta cgctgcaggc actcaactcc ggtttgttcg gactggagtg
      121 aggaaccagg cattggtgaa acagaatcct gcacccattc ataccggcca gtattcatga
      181 cagcaaggct gcatgaatac tggctttttt tattgtgcta ctgatagcgg cgaagccgta
      241 aacttgcagg caatcagcat ttgttatgtc aaaacatctg aacgtagaga tcaaagcccg
      301 ttgcgcccat ttggatgagg caaggaaagt tttacaggaa ctgggcgctg attacaaggg
      361 caccgatcat cagaccgata cctatttcgt ggtgcccaac ggccggctga aattgcggca
      421 gggcaatatt gaaaatgcat tgatctttta ccaccgggaa aatgcagcca cacccaaagg
      481 ctcgcaggtg aacatgatac aggtgcagga gggcgaggcg ctgaaaagcc tgctgacaga
      541 agcgctgggc gtaaaagtgg aagtgaagaa aagccgggag atctacttca tcgacaacgt
      601 gaagtttcat cttgaccagg tagcgccact gggcactttc gcggaaatag aagccattga
      661 taagaccggt acactcggtg cggatcacct gcagaaacag tgcgaacact acatgcaatt
      721 actgcgcatt gcgcccggtg atttgctgag ccattcgtac agcgatatgc tgatggataa
      781 aaagccgggg tgatttttac ttgagaatta ctgtacccaa aacctgggtg atgtcgcgtt
      841 caaacctttt gagctccatg tgcagttcaa tcagttgggt ttgtatttca ggatcttttt
      901 ctttctccaa atcctgctgg gtttgctcca gcatttgttt cagtttgcgc aatttgaaat
      961 agtgtaccga tcgggtcgtg tcctttacac tttgatcaat ctcgtcagcc ttttttccct
     1021 gtatcaattc ttcccatttg gggctcagtt cgtacgggaa ttccagcagc gaaataacca
     1081 gccggtttat tttttcatcg ggatagtata caaatgattt ttctgtgggc tgcaagcctg
     1141 cctcatacca gcctttgtac agcaggtaca attgctccag ttcggcattg tcgaagtgaa
     1201 aatcttcgag ggcatgaaat atgaaagtgg ctacggtttc cttgtcgttc atgggcaaga
     1261 ggccatacac caacaggcat ttcagcacgg ctctttcctg cagctcgttg gagatgagga
     1321 aagtgaggct ggcttcaatt tcttcttcag gcgcattggt taaatcaatg acctggcttt
     1381 gttcgttctg ctgtttccgc tgctcccgtt gcaggcgttc gcgaatgaac ttgttgacga
     1441 ggttgatcag gccatcttca tccactttca gcaggctggc tgtttgcctg atgtaatcct
     1501 gctggcggct gaagtcttcc gccttgtcga ttttgctgat gctctcggca atgcggttca
     1561 ccacttcgct gcgcttttgc gaatcgttgc cggcttcctt cagcgatacc tctgtctgga
     1621 aaaggatgaa gtcctttttg ttttgctgaa tgtattcgtt gaaatcttct ttgccaacct
     1681 tacgtacata gctgtcgggg tcctcgccat cgggcagcaa cacgagtttc acatacagac
     1741 cttccgccaa tgcc
//
LOCUS       DATIQF010000932         5159 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_121449,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000932 DATIQF010000000
VERSION     DATIQF010000932.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5159
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121449"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..714)
                     /locus_tag="VLL95_16120"
     CDS             complement(<1..714)
                     /locus_tag="VLL95_16120"
                     /inference="COORDINATES: protein motif:HMM:NF026042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSR40437.1"
                     /translation="MGKPTGFLEFTREMPGKRSVEERVHDYKEFVAAFPPEQLNKQAA
                     RCMNCGVPFCHSGCPLGNVIPEFNDAVYRKQWREAYDILTSTNNFPEFTGRICPAPCE
                     SACVLGINQPPVAIEEIEKHIIEIAFEQGFVKAQPPMIRTGKKVAVVGSGPAGLAAAA
                     QLNKAGHAVTVFERDDRPGGLLRYGIPDFKLEKWVIDRRVQLMEEEGVVFRCNTNVGT
                     DVSTGDLLREFQAIVLAGGS"
     gene            complement(770..>5159)
                     /gene="gltB"
                     /locus_tag="VLL95_16125"
     CDS             complement(770..>5159)
                     /gene="gltB"
                     /locus_tag="VLL95_16125"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: protein motif:HMM:NF008730.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HSR40438.1"
                     /translation="EHRGACGCEANTGDGAGIMIQIPHEFLMAEALKSGVQLPAVGKY
                     GVGVVFFPKNVTSREACRDTFNRTAEQLNLEILWYRKVPVNRETIGETALSVEPEMEQ
                     VFVKCPDHISDQTEFDRKLFVLRNYASHLINNTVKQDAVGFYIASMSSRVLVYKGQLT
                     SHQVREYFPDLSQKTLTSAFGLVHSRFATNTFPSWKLAQPFRFIAHNGEINTLQGNLN
                     WLRSSEKGFTSPFFTTEEMEMLLPIVTGGQSDSACLDNMIELLTYTGRSLPHVMMMLI
                     PEAWDEHPEMDAAKKAFYKYHACLMEPWDGPASISFTDGKMIGAALDRNGLRPSRYCV
                     TTDDRVIMSSESGTLPVDPSIVIEKGRLQPGKMFVVDMEQERIISDDELKAEICNSKP
                     YGDWLNKYKIRLEELPEPRVMFTHLEHDQIFKYQKVFGYSSEDLDTIIAPMALDGKEP
                     IGSMGTDAPLAVLSDQPQHLANYFKQLFAQVTNPPIDPIRERLVMSLATFVGNNGNLL
                     GEDPLSCHTVALKHPILSNHELEKIRSIDTGIFQAKTLQCYFMADGKPGSLKRGLDRL
                     CRYAVDAVEDGFEVVILSDRAIDSDHAPIPTLLATSAVHHHLIRKGYRGKVGIVVEAG
                     DVWEVHHFAALLGFGATAINPYLAMSSIRDMKLTGKLETELEADVLKKNYVKAVKEGL
                     LKVFSKMGISTLQSYQGAQIFEIIGINKSVVDQYFTGAVSRIEGMGLDEIAKEVLAKH
                     FFAFSKKEVPTDRLPVGGVYQWKRKGEYHLFNPQTIHLLQYSTRMNDYATFKKYSKLV
                     NDQTQKAATLRGLLEFRKLRPSVKIEEVESAESILKRFATGAMSFGSISWEAHTTLAI
                     AMNRIGAKSNTGEGGEDESRYVPLANGDSMRSAIKQVASARFGVTSQYLTEADELQIK
                     MAQGAKPGEGGQLPGHKVDEWIGKVRHSTPGVGLISPPPHHDIYSIEDLAQLIYDLKN
                     ANRRARISVKLVSKAGVGTIAAGVTKAKADVVLISGHDGGTGASPLSSIRHAGLPWEL
                     GLAETNQTLIKNKLRSRVVVQADGQMKTGRDIAIAALLGAEEWGVATAALVVEGCIMM
                     RKCHLNTCPVGVATQDPDLRKRFSGNADAVVNFFHFMVQELREIMAELGFRTINEMVG
                     QVDYLQMREGIDHWKYKNLNLGDVLYKEPAYGTTLYCSEQQDHGLELVLDRHLLRLAE
                     PAMESGAKVFEKLPIINTDRTTGTMLSNEITRKYGAAGLPDDTIHFKFEGTAGQSFGA
                     FATKGLTLELEGDANDYFGKGLSGAHLVVYPSTKASFVPEDNIVIGNVALYGATDGTA
                     YIRGKAGERFAVRNSGATAVVEGVGDHGCEYMTGGRIIVIGETGRNFAAGMSGGIAYV
                     YDPNQLLPGRCNPEMVDLDPCNEEDAAFLKSQLEKHLQHTRSSVANYLLADFDNALKQ
                     FVKVFPKDFKKVLLSKAKPGVQQPVA"
BASE COUNT         1072 a         1431 c         1372 g         1284 t
ORIGIN      
        1 ggagccgccc gccagcacaa tggcctggaa ctcccgcagc aggtcacccg tgcttacatc
       61 ggtacccaca ttggtattac agcggaatac tacgccttcc tcttccatca gctgcaccct
      121 gcggtcgatc acccattttt cgagtttgaa atccgggatg ccataacgca acaaaccacc
      181 cggcctgtcg tcccgctcaa atacggtgac agcatgcccg gccttgttga gttgcgccgc
      241 ggcggctaag cccgcaggac cggaacccac tactgccact tttttgccgg tgcggatcat
      301 ggggggctgc gccttcacga atccttgttc aaaagctatt tcaatgatgt gcttttcgat
      361 ttcttcaatg gccaccggcg gttggttgat gcccaatacg caggcgcttt cgcaaggtgc
      421 cgggcaaatg cgaccggtga actccgggaa attattagtg gacgtgagga tatcgtaagc
      481 ctccctccat tgtttgcgat aaacggcatc attgaattca gggatcacat tacccagcgg
      541 gcaaccgctg tggcaaaagg gtacgccgca gttcatgcag cgggcagcct gcttattcaa
      601 ttgctcaggc ggaaaggccg ctacaaactc tttgtagtcg tgcacccttt cttccacgct
      661 tcgcttgcct ggcatttccc tggtgaactc caaaaatccg gtgggttttc ccatattgct
      721 tgtctctttc agtttacaga tggtggttga ttcaaaatgt tcctgccggt cacgctacag
      781 gttgctgcac gcctggtttg gctttcgaca gcaacacttt tttgaaatct ttcgggaaca
      841 cttttacaaa ctgcttcagc gcattgtcga aatcggccag caaatagttc gccaccgagc
      901 ttcgggtatg ctgcaggtgc ttttctagtt gtgatttcag gaacgcggca tcctcttcgt
      961 tacaaggatc gagatccacc atttccgggt tgcagcgacc gggcaacaat tggttgggat
     1021 cgtacacata ggcaatacca ccactcatgc cggcggcaaa atttctgccg gtctcgccaa
     1081 tcacaatgat gcggccgcct gtcatgtact cgcagccatg gtcgcccaca ccttccacta
     1141 cggccgtggc gccgctgttc cgcaccgcaa agcgttcacc ggctttgccc cggatgtagg
     1201 cagtgccatc agtagcgcca tacaaggcca cgttgccaat cacaatattg tcttctggca
     1261 cgaagctggc tttggtgctg gggtaaacca ctaaatgtgc accactcaat cctttgccaa
     1321 agtagtcgtt ggcatcgcct tccaattcca gcgtcagtcc tttggtggca aaggccccaa
     1381 aactctggcc cgccgtgcct tcaaatttga aatgaatggt atcatcgggc aaaccggctg
     1441 cgccatactt gcgggtgatt tcattggaaa gcatcgtgcc tgtggtacgg tcggtattga
     1501 tgatgggtag tttttcaaac actttggcgc cgctttccat agcgggttca gccagtcgga
     1561 gcaaatgcct gtcgagcacc aattcaagac cgtgatcctg ctgctcgctg cagtacaggg
     1621 tagtgccata ggcaggctcc ttgtacaaca catcgcccag gttgaggttc ttgtatttcc
     1681 aatggtcgat gccttcacgc atttgcaggt agtcaacctg gcctaccatt tcatttatcg
     1741 tgcggaatcc cagttctgcc atgatctccc gcagttcctg caccatgaaa tggaagaagt
     1801 tgaccacagc atcggcattg ccgctgaacc gcttgcgcag atcaggatct tgcgtggcta
     1861 ctccaacagg gcaggtattg aggtggcatt tgcgcatcat gatgcagcct tccaccacca
     1921 gggcagcggt agccacaccc cattcttcgg cgcccagcag ggcggcaatg gcaatatcgc
     1981 gaccggtctt catttgaccg tcggcctgca ccaccacacg gctgcgcagt ttattcttaa
     2041 tgagggtctg gttggtttcg gccaggccca gttcccaggg caagccggca tggcggatgg
     2101 aactcagcgg cgaagcgccg gtgccaccat catgaccaga tatcagtacc acatcggctt
     2161 tggctttggt aacgccggct gcaatggtgc cgacacccgc tttgctcacc agcttcacgc
     2221 tgatgcgggc ccggcggttg gcatttttca ggtcgtagat caattgcgcc aaatcttcaa
     2281 tgctgtagat gtcgtggtga ggcgggggag agatcaatcc tacgcccggt gtgctgtgac
     2341 gcactttgcc gatccactca tccaccttgt ggccgggcaa ctgtccgccc tcgccgggct
     2401 tggcgccctg cgccattttg atctgcaatt catcggcctc ggtgaggtat tgactcgtta
     2461 caccaaagcg ggcagaagct acctgcttga tggcactgcg catgctgtcg ccattggcca
     2521 ggggcacata gcggctttca tcttctccgc cttcaccggt attgcttttg gcgccgatgc
     2581 ggttcatggc aatggccagc gtggtatgcg cttcccaact gatcgatcca aaactcatgg
     2641 caccggtggc aaagcgtttc agtatgcttt cagcagattc tacttcttca attttcacgg
     2701 aaggccttag tttgcggaat tcgagcaggc cccgcagggt ggccgctttc tgcgtttgat
     2761 cattcaccag cttgctgtac ttcttgaaag tagcatagtc gttcatgcgg gtgctgtact
     2821 gcagcaggtg aatggtttgc gggttgaaca aatggtattc acccttgcgc ttccactggt
     2881 acacaccgcc tacaggcagg cgatcggtgg gcacttcttt tttgctgaag gcaaagaaat
     2941 gtttggccag cacttccttc gctatttcat ccaggcccat gccttcaatg cggctcacgg
     3001 caccggtgaa gtattgatcg accaccgatt tgttgatgcc gatgatctcg aagatctgtg
     3061 caccctggta agactgcagt gtactgatgc ccattttact gaacactttc agcaagcctt
     3121 cttttaccgc ttttacatag ttctttttga gtacatcggc ttccagttcg gtttccagtt
     3181 tgccggtcaa cttcatgtcg cggatggaac tcatggcgag gtaggggttg atggcggtgg
     3241 cgccaaaacc cagcagggcc gcgaaatgat gcacttccca cacatcgccg gcttccacca
     3301 caatgcccac tttgccccgg tatcctttgc gtatcaggtg gtgatgcacg gcactagtgg
     3361 ccagcagggt aggaatggga gcgtggtcgc tgtcaatggc gcggtcgctc aaaatcacca
     3421 cttcaaatcc atcttccacc gcatccaccg cgtagcggca aagacggtcg aggccccgtt
     3481 tgagagagcc gggcttgcca tcggccatga aataacactg cagcgttttg gcctggaaaa
     3541 tgccggtatc gatactgcgt attttttcca gttcatgatt gctgaggatg ggatgcttga
     3601 gcgccacggt atgacagctc aagggatctt cacccagcag gttgccattg ttgcccacaa
     3661 aagtggccag gctcatcacc agtctttcac gaatggggtc gattggtgga ttggtcacct
     3721 gcgcaaacaa ttgtttgaaa tagttggcca ggtgttgcgg ctgatcgctc agtaccgcca
     3781 gcggcgcatc agtacccatc gaaccaatgg gttctttgcc atccaatgcc atcggggcaa
     3841 tgatggtatc caggtcttca gaagaatagc caaatacttt ctggtacttg aagatctggt
     3901 cgtgctcgag gtgggtgaac atcacccggg gttcgggcag ttcttccagg cggatcttgt
     3961 atttgttgag ccagtcgccg taaggcttgc tgttgcatat ctcggccttc agttcgtcat
     4021 cgctgatgat acgctcctgc tccatgtcta ccacgaacat cttgcccggc tgcaggcggc
     4081 ctttttcaat aacaatgctc gggtctacgg gcagtgtgcc gctttctgaa gacatgatca
     4141 cccggtcgtc ggtggtaacg caataccggg aaggacggag accattacgg tcaagggcgg
     4201 cgccgatcat cttgccatcc gtaaacgaaa tagatgccgg cccgtcccag ggttccatca
     4261 ggcaggcatg gtatttgtaa aatgcttttt tggcagcatc catttccgga tgctcatccc
     4321 atgcctcagg gatcagcatc atcattacat gcggcaggct gcgccccgtg taggtgagca
     4381 gctcaatcat attgtcgagg caggcactgt cgctctggcc gccggtcaca atgggcagca
     4441 gcatttccat ttcttcggtg gtgaagaaag gagaggtgaa tcctttttca ctgctgcgca
     4501 gccagttcag gttgccctgc agggtattga tctcgccatt atgcgcaatg aaacggaaag
     4561 gttgtgccag tttccagctg gggaaagtat tggtggcaaa acggctgtgc accaggccaa
     4621 aggcactggt gagcgttttc tgcgacaggt cggggaaata ctcacgaacc tggtggctgg
     4681 tcagctgtcc tttgtacacc agcacccgag atgacatgga ggcaatataa aatccaacgg
     4741 catcctgctt caccgtgttg ttgatgaggt gagaggcgta attgcgcagc acaaacaact
     4801 tgcggtcaaa ttcagtctgg tcgctgatgt ggtcggggca ttttacgaat acctgttcca
     4861 tttcgggttc taccgacaag gcggtttcgc caatggtttc gcggttcaca ggcactttgc
     4921 ggtaccacaa gatctccagg ttcagctgtt cggccgtgcg gttgaaagtg tcgcggcagg
     4981 cttcccggct ggtcacgttc ttgggaaaga aaaccactcc cacgccatat tttccaacgg
     5041 caggcaattg aacacccgat ttcagcgctt cggccatcag gaattcatgg ggtatctgta
     5101 tcatgatgcc cgcaccatcg ccggtattgg cttcacaacc acaggcacca cggtgctcc
//
LOCUS       DATIQF010000933         2425 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_197274,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000933 DATIQF010000000
VERSION     DATIQF010000933.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2425
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197274"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2208
                     /locus_tag="VLL95_16130"
     CDS             <1..2208
                     /locus_tag="VLL95_16130"
                     /inference="COORDINATES: protein motif:HMM:NF024893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA-like C-terminal region-containing protein"
                     /protein_id="HSR40439.1"
                     /translation="PMAFHAEQLNYVGKGDLQSSQFDLKSKLSAEHFRFIYDGLTYIN
                     DKPLRAELITGINTSSLVFKFEKNQLMLNQLPVEFRGSMAILKEGYDIDLHLVSGTTD
                     FGNIFSVLPPEYNQWFANTNFQGTSQVTASLTGVYNTRLNQGPHLRIDMRVKDGSIRH
                     QQAPVPLEHFNIAAHFNMPALNTDSIELLIDTLGFTVGKGKTDARLLTKGLTKPFIDA
                     SLRSDIDLDLLQQALALPGYEVAGRLHAEIKSRGVWDLAKQTLPVVQSNIQMQKGRIQ
                     TPWYPQPIQNLELVARMDCPTGRLEDARLLLQPVSFVFEEQPFQMNAALENFNNLAYD
                     IQAKGVLDLGRIYQVFRIQEYNLSGRLDADLQLKGSQADAMAGRIEKLSNKGTLKMQE
                     VSFSSVDFPYPFEIPTGNLEVINEKAWLRNTTLRYHAHEFLLNGYATGFAGYYLQNKP
                     LTLRLTTSGKNLVVNDFMPVSSTNADSAAASPASTGVVMLPGNIDFVLKSRFDSIQYN
                     QNSIKNFSGTLQLREGKLDMQQTKFMVAGAKVDMDGSYAPVNNDSARFSLHLKADSFD
                     IKRAYNEVPLFRELASSAAYASGLVSVDYELKGALNNEMMPVYRSIAGGGEVKLEEVQ
                     VKGMKLFGAVSKATGKDSVNNPKLKAVVVKSTIANNIISIERTKMKVFGFRPRLEGKV
                     SLDGELWLKFRLGLPPFGIIGIPMTVTGTSENPRVRMSKNLEELDAEDNEEEP"
     gene            2192..>2425
                     /locus_tag="VLL95_16135"
     CDS             2192..>2425
                     /locus_tag="VLL95_16135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40440.1"
                     /translation="MKKNHNHYAGDIGFSCIFAVQNKSLSMRHALRLAGLAVLLLISS
                     ESFSQEKKFKGVPGFDFRIGYGIVPVQNLNESFS"
BASE COUNT          655 a          621 c          596 g          553 t
ORIGIN      
        1 ccgatggctt ttcatgccga acaactcaac tatgtgggca aaggcgattt gcaaagcagc
       61 cagttcgatc tcaagtcaaa actcagtgct gaacactttc gatttattta cgacggcctc
      121 acctacatta atgacaaacc cttgcgggcc gaactcatca ccggcatcaa cacttcgtca
      181 ctggttttca aatttgaaaa gaaccaactc atgctcaacc agctgcccgt ggagttcagg
      241 ggcagcatgg ccattttaaa agagggctac gatatcgatc ttcacctggt aagcggcacc
      301 actgatttcg gcaacatctt ttccgttttg ccacccgaat acaaccagtg gtttgccaac
      361 acaaactttc aaggcacatc gcaggtaaca gcttcactga cgggtgtata caacacgagg
      421 ttgaaccagg gccctcacct ccgcatcgac atgcgggtaa aggatggaag cattcgtcac
      481 cagcaggcac cggttccact tgagcatttc aatatcgctg ctcacttcaa catgcctgca
      541 ctcaataccg acagcataga actgctcatt gatacgctgg gcttcacagt gggcaaaggg
      601 aaaaccgatg cccggctgtt aacaaaaggg ctgaccaaac ctttcatcga tgcctctttg
      661 cgcagtgata tcgacctcga ccttttgcag caggcactgg cccttcccgg gtatgaggtg
      721 gcgggccgtt tgcatgcaga gatcaaaagc cgcggtgtat gggatttggc caaacaaaca
      781 ttgcctgtgg tacagagcaa tattcaaatg caaaaaggga ggatccaaac gccttggtat
      841 ccgcagccca ttcaaaacct tgaattggtc gcccggatgg attgccccac cggtcgcctg
      901 gaagatgcca ggctcttatt gcaacccgtc agttttgtgt ttgaagagca gccttttcaa
      961 atgaatgccg cactggagaa tttcaacaat ctggcttatg acatacaagc caagggtgtg
     1021 ctcgaccttg gcaggatcta ccaggtattt cgcatccaag agtacaacct ttccggcagg
     1081 ctggacgccg acctgcaact gaaaggatca caggccgatg ccatggctgg tcgcattgaa
     1141 aaactatcca acaagggcac gctgaaaatg caagaggttt ccttcagctc ggttgatttt
     1201 ccctatccgt tcgaaattcc aaccggcaac ctggaagtga tcaatgaaaa ggcctggctg
     1261 cgtaacacca cgttgcgata ccatgcccat gagtttttac tgaacgggta tgcaaccggt
     1321 tttgccggtt attacttgca gaacaaaccg ctgaccctgc gcctgaccac cagcggcaag
     1381 aacctggtgg tgaatgattt catgcccgtg tccagcacca atgccgacag tgccgctgca
     1441 tcgccggcca gtacaggggt ggtgatgctg ccgggcaata ttgattttgt actgaaaagc
     1501 cgcttcgaca gcattcaata caatcagaac agcatcaaaa atttctcggg caccctgcaa
     1561 ttacgcgaag gcaaactgga catgcagcaa accaaattca tggtggcggg cgccaaagtg
     1621 gacatggatg ggagttatgc ccctgtcaac aacgacagcg cccggttttc gctgcatctg
     1681 aaagccgatt cgtttgacat caaaagagct tacaatgaag tgccgctgtt cagggaactg
     1741 gccagttctg cagcctatgc cagtggtttg gtatctgttg attacgaact caagggcgca
     1801 ttgaataacg aaatgatgcc ggtgtaccga agcattgccg gcggcggcga agtaaaactg
     1861 gaagaggtac aggtgaaagg catgaagctt tttggagcgg tcagcaaggc taccggcaaa
     1921 gacagcgtca acaacccgaa actgaaagca gtggtcgtca aatcaaccat tgccaacaac
     1981 atcatcagca ttgaacgcac caaaatgaaa gtgttcggct tccggccaag gctggaagga
     2041 aaagtgtctc tggacggcga actctggctc aagttcaggc tgggacttcc cccatttggc
     2101 attatcggga taccaatgac cgtaacaggc acctccgaaa acccaagggt gcgcatgagc
     2161 aagaacctgg aagaacttga tgccgaggac aatgaagaag aaccataatc actatgcagg
     2221 cgatattggg ttttcctgca tttttgcggt gcaaaataaa tccttatcca tgcgacacgc
     2281 tttacgtttg gctggccttg ccgtcctcct tctaatttct tctgaatcgt tttcacagga
     2341 aaagaaattc aaaggtgttc cgggttttga tttcaggatc ggatacggta ttgtacctgt
     2401 gcaaaacctg aatgagagtt tcagt
//
LOCUS       DATIQF010000934         1800 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_273571,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000934 DATIQF010000000
VERSION     DATIQF010000934.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1800
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273571"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..389)
                     /locus_tag="VLL95_16140"
     CDS             complement(<1..389)
                     /locus_tag="VLL95_16140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40441.1"
                     /translation="MKSLLFQAVCSLILIAPSLSQTWTGSANNDWNNANNWSPTAIPT
                     SASNVIIPGTVSSGRWPVFSGNVTINTLATNYGSQLDVNGYTLTLNTVDANNNLQGLT
                     VNNIVPANDIVINIAGGTGGFSTAFLR"
     gene            complement(572..1027)
                     /locus_tag="VLL95_16145"
     CDS             complement(572..1027)
                     /locus_tag="VLL95_16145"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR40442.1"
                     /translation="MSISLLRTDSSHPDFIALVRQLDADLAIRDGDEHAFYAQFNKID
                     KIKHALVAYNESHEPIGCGAIKAFSSDAMEVKRMWVVPAFRGKGIASEILKALEDWAR
                     ELGYRRCVLETGKKQVEAMHLYPKNGYQLIPNYGQYIGIENSVCFEKRL"
     gene            complement(1057..1509)
                     /locus_tag="VLL95_16150"
     CDS             complement(1057..1509)
                     /locus_tag="VLL95_16150"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSR40443.1"
                     /translation="MKQRMRIHPILIFVFFITQLTTASAQTRQKWMAEIVAAEKAFCE
                     DLKSKGVAYAFAKYAAEDAVIKRENDSLIYGKAAIGKYYSSPAYKNAIADWKPDYTDV
                     SADGTLAYTYGKYTWTFKDEEGRENRFSGVFHTVWKRQPDGTWKYVWD"
BASE COUNT          423 a          436 c          442 g          499 t
ORIGIN      
        1 ttgcgcagga aggcagtgga gaatccacct gtgccgccgg caatgtttat aacgatatcg
       61 ttggcaggca caatattgtt cactgtgaga ccctgcagat tattgttggc atccacggta
      121 ttcaatgtca gcgtatagcc attcacatcc aattggctac cgtagttggt ggcaagtgta
      181 ttgatggtta cgttgcccga aaataccggc catcggccgc tgctgaccgt gccaggtatt
      241 atcacgttag atgcactcgt gggtatggcc gtgggactcc agttgttggc attgttccaa
      301 tcgttattgg cagatcctgt ccatgtttgg gaaagggaag gagctatcaa aatcaggctg
      361 cacacagcct ggaaaagcag gcttttcata caagggagtt agggtattac aaagagcgat
      421 gctgaccagg cagcattttg tttaaggtag cttttttgcc ttcgggaatg catgacaaaa
      481 attagcttcc agtgccagga aagggcacga aagaacttta cagaagtaga ttatcgcgat
      541 cacctgttgt ggttgcaaag tcgctgatta gttacagccg cttctcaaag caaacgctgt
      601 tttcaatgcc gatgtactgg ccgtaattgg ggatcagctg gtagccgttt tttgggtaca
      661 ggtgcatggc ttccacctgc ttcttgcccg tttccagcac acatctgcgg tatcccagtt
      721 cccgggccca atcctccagt gccttaagta tttcgctggc aattcctttt ccgcgaaagg
      781 ccggtaccac ccacatcctt tttacctcca tggcatccga tgaaaatgct ttgatggctc
      841 cgcagcctat cggttcatga gactcgttgt aggccaccaa ggcatgtttg atcttatcaa
      901 tcttgttgaa ctgcgcatag aaagcatgct catcgccatc acgaatagcg aggtcggcat
      961 ctaactggcg caccagtgct ataaaatccg gatgagagga gtcggttcga agcaaggaaa
     1021 tgctcatggc aagaattagt tatgatacgg gcttcattaa tcccaaacat atttccaggt
     1081 gccgtcgggc tgtcttttcc aaacggtgtg aaaaacgccg ctgaagcgat tttccctgcc
     1141 ttcctcgtct ttaaaggtcc aggtgtattt gccataagtg tatgccaatg tgccatcagc
     1201 ggacacatcg gtgtaatcgg gcttccaatc ggcgatggca tttttatagg caggagaaga
     1261 ataatatttg ccaatggcag ctttgccata aatgagggag tcgttttccc ttttgatgac
     1321 tgcgtcttcg gctgcatact tcgcaaaggc ataagccacg ccttttgact tcaggtcttc
     1381 acaaaaggct ttttccgctg ccacgatttc ggccatccat ttttgcctcg tttgtgccga
     1441 agccgttgtc aattgagtga taaaaaatac gaatatcaaa atggggtgaa tcctcatccg
     1501 ctgcttcatg ttcttcaggg tttctataaa gttgcaggca gatccatcca tcctccaaac
     1561 cgctggtaca aaaaatgcga aggaattttc cttcgcattg atcttttctg attcgctcct
     1621 tcttgtctca gccaaacagc ggatagtcga taaacggctg ctgccggagg cgttttttag
     1681 aagccttgta aatggcattc gccacggcgc caccggttgg cggcaacgct ggttccccta
     1741 agccggttgg gtctttgccg ttgtccacga aggccacgtc aatttccggg atctctttca
//
LOCUS       DATIQF010000935         2121 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_90700, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000935 DATIQF010000000
VERSION     DATIQF010000935.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2121
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90700"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1666)
                     /gene="rho"
                     /locus_tag="VLL95_16155"
     CDS             complement(<1..1666)
                     /gene="rho"
                     /locus_tag="VLL95_16155"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HSR40444.1"
                     /translation="MYDILQLNDMLVPELVDIAEQLKISDAKKLSKQDLIYKILDKQA
                     VIESAMKAAPTGEKTKRKRIIKATTSNVTEEAEVMEPSQPAAAPAPAAEEAKPARSKG
                     AKPAKKSADKKEAAPAPAAEAPKPAGANKSNNIKGKKPAAGSILDEGESIESIFRDAL
                     SSLENLGDAEEIVIEEPEEAAAGETEASEAQQQERPRQQLPPLKPKMEPMFSVEYDGL
                     VTGEGVLEMMPDGYGFLRSSDYNYLSSPDDVYVAPGQIKMYGLKTGDTVQGIIRPPKE
                     GEKYFALVKAEVINGKTPEEVRDRIPFDYLTPLFPYEKLNLFTTPGNLSTRIMDLFTP
                     IGKGQRGLIVAQPKTGKTMLLKEVANAIAENHPEVYMMVVLIDERPEEVTDMERSVRA
                     EVLASTFDEPAEKHVKVSAIALQKAKRLVECGHDVVILLDSITRLARAHNTVAPASGK
                     VLSGGVEANAMQKPKQFFGAARKIENGGSLTILATALIDTGSRMDEVIFEEFKGTGNM
                     ELQLDRRLANKRIFPAIDLVASSTRRDDLLLDKDVVSRMYLLRNYLA"
BASE COUNT          428 a          521 c          567 g          605 t
ORIGIN      
        1 cggccaggta gttgcgcaac aggtacatgc ggcttaccac atccttatcg agcagcaggt
       61 cgtcgcggcg ggtgctggag gccaccaggt cgatggcagg gaagatgcgc ttgttggcca
      121 ggcggcgatc gagctgcaat tccatgttgc cggtaccctt gaattcttcg aagatcactt
      181 catccatacg gctgccggtg tcaatcaacg cggtagccag gatggtgagc gaaccaccgt
      241 tttcaatttt acgggccgcg ccaaagaact gcttgggctt ttgcatggcg ttggcttcca
      301 caccaccgct cagtaccttg ccactggcag gcgctacggt gttgtgggca cgggccaggc
      361 gggtgatgga gtcaagcaat atcactacat cgtggccaca ttctaccagt cgcttcgctt
      421 tttgcagcgc aatggcactc accttcacat gcttttcagc cggttcatcg aatgtgctgg
      481 ccagtacttc ggcacgcaca ctgcgttcca tatcggtcac ttcttccggg cgttcatcta
      541 tcagcaccac catcatgtat acttccggat ggttttcggc aatggcattg gccacttcct
      601 tcagcaacat ggtcttacct gttttgggct gtgccacaat caggccacgt tgtcctttac
      661 caatgggagt gaacaggtcc atgatgcggg tgctcaggtt gcccggtgtg gtaaagaggt
      721 tcagtttttc gtaagggaaa agtggcgtca ggtaatcgaa aggaatacgg tcacgtactt
      781 cttcaggcgt tttgccattg atcacttcag cctttaccag ggcgaaatat ttctcccctt
      841 ctttgggtgg cctgatgatg ccttgtacgg tgtcacctgt cttaaggccg tacatcttta
      901 tctggcccgg agccacatac acatcatcgg ggctgctcag gtagttgtaa tcgctgctgc
      961 gcaggaagcc ataaccatca ggcatcattt ccagcacgcc ttcgccggtc accagtccgt
     1021 cgtattctac gctgaacatg ggttccattt tgggcttcag tggcggcagt tgctggcgtg
     1081 gcctttcctg ctgctgcgct tcggaagctt cggtttctcc ggcggccgcc tcctctggtt
     1141 cttcaattac aatttcttcg gcatcaccca ggttttcgag gctgctgagt gcatcacgga
     1201 aaatggattc tatgctttcg ccttcgtcca ggatggatcc tgccgctggc tttttgcctt
     1261 tgatgttgtt tgatttgttg gcgccggccg gctttggtgc ttcggcggct ggtgcaggag
     1321 ccgcttcttt tttatcagca gatttcttag cgggtttagc ccccttgctg cgggcaggtt
     1381 tggcttcttc tgctgctggt gcaggcgctg ctgcaggctg gctgggttcc attacttctg
     1441 cctcttcggt cacgttggaa gtagtggctt tgataatgcg cttgcgcttg gtcttttcac
     1501 cggtgggagc agctttcatg gcgctttcaa tcacggcctg cttgtcgagg atcttgtaga
     1561 tcaggtcttg tttggaaagc tttttggcgt cggagatctt cagttgctct gcaatgtcca
     1621 ccagttcagg aacgagcatg tcgttcaatt gcaaaatgtc gtacatacga tacagtcaaa
     1681 taaaaaaatg atatggctag ggccagaatg tgaaaagaaa aattgggagg ttggtttggt
     1741 gaagctgaca gcctttgata agaagagtag caagggctag attcagaatt caggtgcaat
     1801 aataggagat atttcgtgaa aaaagcaaga ctgtggcagc cggaggcagg ttacagtttc
     1861 tttttgaggg ttaattggca aaaattatcg gaatttcaat caatctcttt ctttgctgtt
     1921 gggcttgccg gcacatttgt ttcaggggga aatggcagac aaaccgtgat ttgaaaacca
     1981 aaactggtca tgatgaaagt cgcatcttac ctgcagtatc tttttttctt tatactgaat
     2041 acgccgttgt ttttacaggc gcaaaagcgt cccaatattc tcgtcatttt ctccgatgat
     2101 catgcccagc aagccatcag t
//
LOCUS       DATIQF010000936         1773 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_75608, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000936 DATIQF010000000
VERSION     DATIQF010000936.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75608"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(143..1618)
                     /locus_tag="VLL95_16160"
     CDS             complement(143..1618)
                     /locus_tag="VLL95_16160"
                     /inference="COORDINATES: protein motif:HMM:NF014147.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 30 beta sandwich
                     domain-containing protein"
                     /protein_id="HSR40445.1"
                     /translation="MASALRNTLIPFIRLVTSRRPTIFLLLLFSTTFMMAECKKGGGE
                     EPPPAPGEIEQWLTRADRNALMQKQSTLLAFSSPSNGFQNIEINEATAYQTMDGFGYS
                     LTGGSADLINNMSADLRSKLLTELFGNTGDAIGISYLRVSLGASDLSKDVFSYCDLPA
                     GQTDPTLSKFSLAADTVNLIPVLKQILAINPNIRIMASPWSAPVWMKNNGKSVGGSLL
                     PQYYATYAQYFVKYLQAMQGRGITIEAVTVQNEPQHGGNNPSMVMSAAEQADFVKNHL
                     GPAFKSAGLTTKIIIWDHNCDNPNYPLSILNDPAAKPFVAGSAFHLYAGDITAMSQVH
                     NAHPDKDLYFTEQWTGANGSFDGDFKWHTRNVVIGSVRNWARVVLEWNLANDPFYGPH
                     TPGGCTECKGAVTIDGSAVTRNVSYYIIGQVARFVPSGSTIISSNVPSNLAGVAFKTP
                     SGKKVLLVLNDNNSPVSFNIKVGSKWAAVQLPANAACTYVW"
BASE COUNT          440 a          433 c          445 g          455 t
ORIGIN      
        1 tgttgtcgag ggagaatgga gcgcttgcag tggtttcttt ggtgccggga ttggtttggc
       61 aagccaccaa ccccgcaaca gccagcaatg aagtaatgtg tttcatgata tagaatatta
      121 cgaattgaaa tttcagaacc agttaccata cataggtgca ggcagcattg gcaggcaact
      181 gcactgctgc ccatttgctc cccactttaa tattaaaact gacaggcgaa ttattgtcat
      241 tcaacaccag caatactttt ttgcccgatg gggtcttaaa tgccacacca gccaggttac
      301 tgggcacgtt actgctgatg atggttgatc cggacggaac aaacctggcg acctggccga
      361 tgatgtaata ggaaacattc cgggtgacag cagatccgtc aatggtaaca gcccctttgc
      421 attcggtaca accgcccggc gtatgaggac cgtaaaacgg atcgttggcc aggttccact
      481 ccagcaccac ccgggcccag ttgcgcaccg aaccgatcac aacgttgcgg gtatgccatt
      541 taaaatcgcc atcaaagctg ccattggcac ccgtccattg ctcggtgaaa tacaaatcct
      601 tgtcgggatg cgcattgtgc acctgcgaca tggcagtaat gtcgcctgca tacaaatgaa
      661 aggctgaccc ggccacaaaa ggtttggctg ccggatcatt caaaatactg aggggataat
      721 tgggattgtc gcagttgtga tcccagatga tgatcttggt ggtcagtcct gcacttttga
      781 aagcaggccc caggtgattc tttacaaaat cggcctgttc ggccgcactc atcaccatac
      841 ttggattgtt gccgccatgt tgtggttcat tctgtactgt cacggcttca atggttatgc
      901 ccctgccctg catggcttgc aggtacttta caaaatactg cgcataagta gcgtagtact
      961 gtggcagcaa actgccgcct accgatttgc cgttgttctt catccaaact ggtgcgctcc
     1021 agggactggc catgatcctg atgttgggat tgatggcgag tatttgtttc agcacaggga
     1081 tcagattgac ggtatctgcc gccaaactga atttggaaag cgtcggatcg gtttgaccgg
     1141 caggcaggtc gcaatagctg aatacatctt tactcaggtc ggaagcgcca aggcttacac
     1201 gcaaataact gatgccaatg gcatcacctg tattgccaaa gagttctgtc aacaatttgc
     1261 tgcgcaggtc ggcagacatg ttgttgatca aatcggcact gcccccggta agcgaatagc
     1321 caaagccatc catggtttgg taggctgtcg cttcattgat ctcaatattc tgaaacccat
     1381 tggaaggcga agaaaaagcc agtagtgtgg attgtttttg catcaacgcg ttcctgtcgg
     1441 cacgtgtcaa ccactgctct atttcacccg gtgcaggcgg cggttcttcc ccgcctcctt
     1501 ttttgcattc tgccatcatg aatgtggtgg aaaaaagcag caacaaaaaa atggtggggc
     1561 gtcgggaagt aacgagccgg ataaatggta tcaaagtatt tcttaaagct gaggccatgt
     1621 aatttctttt tagcgtttga agtgtgacta agcagcgaag tgatgatcat tccgctgccg
     1681 gtttcaatac cagcaaaggg agattgtttc gggctaccag caaatgactt ttcccattaa
     1741 ttacaatgga tttggcatcc cgccattcgc ccc
//
LOCUS       DATIQF010000937         2189 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_243101,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000937 DATIQF010000000
VERSION     DATIQF010000937.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243101"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(454..526)
                     /locus_tag="VLL95_16165"
     tRNA            complement(454..526)
                     /locus_tag="VLL95_16165"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(491..493),aa:Lys,seq:ttt)
     gene            694..1518
                     /locus_tag="VLL95_16170"
     CDS             694..1518
                     /locus_tag="VLL95_16170"
                     /inference="COORDINATES: protein motif:HMM:NF004825.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSR40446.1"
                     /translation="MALLKNPEYFRNKVVVVTGGSDGIGKALVEALLNAGAKVATNGR
                     NSDKLYQLQVLHPQQALFTMVGDVSAETDCRNFVDAVVKAFGGIDILINNAGISMRAE
                     FKDVALETIRQVMEINFFGVVYTTKYALPYLLKSKGDIIGVSSIAGYRGLPGRTGYSA
                     SKWALQGWMEALRTELLDSGVNVLWVCPGFTASNIRNAALNKDAKAQGESPMDEGKMM
                     TADECAIHIMNAIAARKRTLVLTFTGKRTVFMNKFFPGLADKLVRKFFYDKGELVR"
     gene            1626..>2189
                     /locus_tag="VLL95_16175"
     CDS             1626..>2189
                     /locus_tag="VLL95_16175"
                     /inference="COORDINATES: protein motif:HMM:NF014003.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent chlorinase/fluorinase"
                     /protein_id="HSR40447.1"
                     /translation="MTVISLTSDIGHKDYLVGAVKGLLWQQNQSVQIADISHDIAPFN
                     YNEAAYFIRNAYPHFPQHTWHIILVNLFDNAQPRCLLAKHQNMFFACPDNGLLPMVFD
                     EVPEQTIVLPLTPQQIPNMLEWTKAIGHAIQAAAQGAKLEELGSPAEKIVVKTNLRPN
                     IGADHIEGRIIYIDRFENVIVNITRQEF"
BASE COUNT          617 a          532 c          516 g          524 t
ORIGIN      
        1 caaaatgtgg aaaaaccaag tcaactgttt aactggaagc agcccataag taaacaaaat
       61 gtgaacacac ggtcgatcaa aggtttaaca ctgatttaac cacctcaaaa atgtggataa
      121 accaattact tcataagccc cacttaaagt ctcataatca gccatttaca gccgataacg
      181 gtccgcgccc ctgacatcct gaaatgcgga gaggccctgc ctttgatggc taaaggcctg
      241 cgtatgcttt gcggcagaat aacctccttg aaacttctat tcagcatctg atccaacacg
      301 ccagttaaag gtaaccagat tggcagaagc aattcccaga ggagattatg aatggattga
      361 gagaacaaag aagctgaatg ccggcagttg gaaacggaag aagagattac cggaaacaaa
      421 aagagcaaag cgtgatgcct tgctcttttc ttgtgatccg gctgggactc gaacccagga
      481 cccatacatt aaaagtgtat tgctctacca actgagctac cagatctacc ctgcaaaaaa
      541 ctggaatttc tttgacgtcc ttccgttttt gggagtgcaa aaataggcgg gcacccctat
      601 cctcccaaaa aaaatttcag aatgtttttc aacagtctgt ttgcaatttc attaacaaat
      661 gccttttgca caaagctcaa ttttgctttc attatggcat tgctcaaaaa ccccgaatat
      721 tttcgaaaca aagtggtggt agtgaccggc ggcagcgatg gaattggcaa agcgctggta
      781 gaagcattgc tcaatgccgg cgccaaagtg gccaccaacg gacgcaacag cgacaagctt
      841 taccaactgc aggtattgca tccccagcag gcactcttca ccatggtggg cgatgtgagt
      901 gccgaaacag actgccggaa ttttgtagac gcagtggtaa aggcttttgg cggcatcgat
      961 attctcatca acaatgccgg catttcgatg cgggctgaat tcaaagacgt tgcgctggaa
     1021 accatcaggc aggtaatgga gatcaatttt ttcggcgtgg tgtataccac caaatacgca
     1081 ctcccctacc tgctcaaaag caaaggcgat attattggcg taagttccat cgcaggatat
     1141 cgtgggctgc ccggacgcac aggatattcg gccagcaaat gggcgctgca aggctggatg
     1201 gaagctttgc gcactgaact gctcgacagc ggggtgaatg tattgtgggt gtgcccgggc
     1261 tttactgcga gcaatattcg caatgcggct ttgaacaaag acgcgaaggc acaaggggaa
     1321 agcccgatgg atgaagggaa aatgatgaca gcagatgaat gtgccattca catcatgaat
     1381 gcgattgcag cacgcaagcg caccctggta cttaccttta cgggcaagcg taccgtcttc
     1441 atgaacaaat tcttcccggg cctggctgac aaactggtac ggaagttttt ctacgataaa
     1501 ggcgaactgg tacggtgacg atgagtgctt tttcaccagg cactttgtta ttcgattgct
     1561 ttgctgcact ttgcgcttgt tttcatctgg tacctcaatt tgtataacga actactgcta
     1621 gccaagtgac cgtcatttct ctcacatctg atattgggca taaagattac ctggtagggg
     1681 ctgtgaaggg attactgtgg caacaaaacc aatcggttca aatagctgac atttcacacg
     1741 acattgctcc tttcaactac aatgaggcgg cttatttcat tcgcaacgct taccctcatt
     1801 tcccgcagca tacctggcac atcatattgg tgaacttgtt tgacaatgca cagccacggt
     1861 gcctgcttgc caaacaccag aacatgtttt ttgcctgtcc cgacaatgga ctgctgccca
     1921 tggtatttga tgaagtgccc gagcaaacta tcgtgctgcc gcttactccc cagcaaatcc
     1981 cgaatatgct ggaatggacc aaggccattg gccatgccat ccaggccgca gcgcaaggcg
     2041 ccaaactgga agagttgggc agtcctgccg agaaaatcgt agtaaaaaca aacctccggc
     2101 ctaatatcgg cgccgaccat attgaaggac ggatcattta catcgatcgt tttgaaaacg
     2161 tcatcgtgaa catcacacgc caggagttt
//
LOCUS       DATIQF010000938         1858 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_258145,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000938 DATIQF010000000
VERSION     DATIQF010000938.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1858
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258145"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1145
                     /locus_tag="VLL95_16180"
     CDS             <1..1145
                     /locus_tag="VLL95_16180"
                     /inference="COORDINATES: protein motif:HMM:TIGR02034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HSR40448.1"
                     /translation="QLEAIERQTKNKANGEIDLALLTDGLRAEREQGITIDVAYKYFS
                     TPKRKFIIADAPGHIQYTRNMVTGASNSELIIVLIDARQGVVEQTRRHSIIASLLRIP
                     HVVVAINKMDLVNYSEDVFNNIVIDYSQIAEKLGLPEVSYIPISALNGDNIVEPSSFM
                     SWYNGPSLLQLLETVPVAKDINLSHSRFPVQYVIRPQTDELHDYRGYAGKIISGVYRV
                     GDKVTVLPAGIETTVSRIEHNRQDVQQAQAPQSIVLHLADDVDVSRGDVIVPADDRPK
                     LSNELEVLLCWMDSKPLLAGNKYQLQLNSSRVRAVVKSIAYKVDVNTLENRDYDGSVK
                     LNEVVKATIKTATALPHDAYAFLRANGGAILIDETSNITVGACMIQ"
     gene            1211..>1858
                     /gene="cobA"
                     /locus_tag="VLL95_16185"
     CDS             1211..>1858
                     /gene="cobA"
                     /locus_tag="VLL95_16185"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: protein motif:HMM:NF004790.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HSR40449.1"
                     /translation="MKSTPFHTGKVVIVGAGPGDPELLTLKALRHLAKADVVLADRLA
                     NPDILKAYAPQAVMIPVGKQCRKDKSTPQATINELLVHHAKAGRYVVRLKGGDISIFS
                     NILDELEALVQNNIPYELVPGVTAALGTAAYAGIPLTARGLSKGVRFITYYNAEAIAS
                     SDWDNLAQTTDTLVFYMSGDTCFELADRLMNHGKPASTPIFLAEQATTPLQQFKLS"
BASE COUNT          489 a          524 c          462 g          383 t
ORIGIN      
        1 accaactgga agccatagaa cgccaaacca aaaacaaagc caacggtgaa attgatttgg
       61 cattgctgac cgatggtttg cgggctgaaa gggaacaagg cattaccatc gacgttgcct
      121 ataaatattt ctctacaccg aagcgaaagt tcatcattgc cgatgcgccg gggcatatac
      181 aatacacccg caacatggta acaggcgcca gcaattctga actgatcatc gtgctcattg
      241 atgcccgcca gggcgtggtg gagcaaactc gtagacacag catcattgct tcgctgctgc
      301 gcattccgca tgtagtggtg gccatcaaca aaatggacct cgtgaattat tcggaagatg
      361 tgttcaacaa tattgtgatc gactactcgc aaattgctga gaagctgggc ttgcccgaag
      421 tcagctacat ccccatcagc gccctcaatg gcgacaacat tgtagaaccc tcctctttca
      481 tgtcatggta caacggtcct tccctgctgc agttgttgga aacagtgccg gtagccaagg
      541 atatcaacct ctcccatagc cggttcccgg tacagtatgt catccgcccc caaaccgacg
      601 aactgcacga ttaccgcggt tatgccggta agatcatcag cggggtgtac cgggtgggag
      661 ataaggtgac cgtgctgccg gccggtattg aaaccaccgt gagccgcatt gaacacaacc
      721 ggcaggatgt gcaacaggca caggcaccgc aaagcattgt gctgcacctg gctgatgatg
      781 tcgatgtaag ccgcggcgat gtgattgtac ccgccgacga tcgtccgaaa ctcagcaatg
      841 aattggaagt actgctttgc tggatggaca gcaaaccgct actggctggc aacaaatacc
      901 aactgcaact caacagcagc cgggtaagag ctgtggtgaa aagcatcgcc tacaaagtgg
      961 atgtaaacac gctagagaac agggattacg atgggtcggt aaaactgaac gaagtggtga
     1021 aagccaccat caaaactgcc accgcactgc cccatgatgc ctatgccttt ttgcgggcca
     1081 atggcggtgc catcctgatt gatgaaacca gcaacatcac ggtgggtgcc tgtatgattc
     1141 agtaaacagc caccatccac ctcagcgctc attcgcattt ttattttgtt caccttttta
     1201 atgaactcaa ttgaaatcca ctccatttca tacaggcaaa gtagtgatcg ttggcgccgg
     1261 ccccggtgac cccgaactgc tcaccctgaa ggcgctgcgc cacctcgcca aagcagatgt
     1321 ggtgctggcc gaccgcctgg ccaaccccga catcctgaaa gcttatgcac cgcaggcagt
     1381 gatgatacca gtgggcaagc agtgccgcaa agacaagagc acgccacagg ccaccatcaa
     1441 tgagttgctg gtgcaccatg ccaaagcagg ccgctatgtc gttcgtttga aaggcggcga
     1501 catcagcatc ttcagcaaca tactggatga actggaagca ttggtacaaa acaacattcc
     1561 atacgaactg gtgcctggtg taacggcggc cctcggcacc gcggcctatg ccggcattcc
     1621 gcttactgcc aggggacttt caaaaggcgt tcgtttcatc acttactaca acgccgaagc
     1681 cattgccagc agcgattggg acaacctggc acaaaccacc gacacgctgg tgttctacat
     1741 gagcggcgat acctgcttcg aactggccga tcgattgatg aatcatggca aacctgcgtc
     1801 cacgcccatc ttcctggccg aacaagccac cacgccattg cagcaattca aactcagc
//
LOCUS       DATIQF010000939         3269 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_182209,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000939 DATIQF010000000
VERSION     DATIQF010000939.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3269
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182209"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            180..629
                     /locus_tag="VLL95_16190"
     CDS             180..629
                     /locus_tag="VLL95_16190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40450.1"
                     /translation="MKSLLLGCILMLGMAATAQKSPPKIPVKGELVKVKEWGGLSVYI
                     MGSFFNETKADIIGKIGEEEFNIMKDRCTEKGWPEGFYNSDNEEERNSLKMYRIAAYT
                     HIFNGKSFQEYAILRIPYEENKGWKPNVKWEGNLYFLVPNEAVTIAQ"
     gene            complement(710..2650)
                     /gene="dxs"
                     /locus_tag="VLL95_16195"
     CDS             complement(710..2650)
                     /gene="dxs"
                     /locus_tag="VLL95_16195"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: protein motif:HMM:NF003933.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HSR40451.1"
                     /translation="MSMHITPGPLLKNIDSPADLKKLSREQLHQVCDELRQYIIDVVS
                     VHGGHFGASLGVVELSVALHYAYNTPYDQLVWDVGHQAYGHKILTGRRDVFPSNRKYK
                     GLSGFPKRSESEYDTFGVGHSSTSISAALGMALAAKYKGENRKSVAVIGDGAMTAGMA
                     FEAMNHAGVSDADMLIILNDNCMSIDPNVGALKEYLTDISLSPTYNKLKDEVWNAIGK
                     LPVGKNFTRAMAHKVAEGLKGAISSSSNLFEALKLRYFGPIDGHNITKLVDTLEDLKK
                     IPGPKILHIVTVKGKGYALAEKDQTKWHAPGLFDKVTGEIVKKKFDAPQPPKYQDVFG
                     HTIIELAEMNPKVWGVTPAMPSGSSLKFMMEKMPDRAIDVGICEQHAATVSAGLATQG
                     LRVFCNIYSSFMQRAYDQVVHDIAIQKLPVTLCLDRAGLVGEDGPTHHGAYDIPYFRC
                     IPNMIISAPMNEQELRNLMYTSQLESTTLPMVIRYPRGEGVMPEWRTPFEAIEIGKGR
                     KLRDGEEIAILSFGHPGNFAKSAIVELKQYGINPGHYDMRFAKPIDEALLHEVFSKYS
                     KIVTVEDGTTVGGFGSAILEFMAQHNYQAQVKMLGIPDRIVEHGSPKELHAECGYDVN
                     GIVAAAKELMKDKVAVSSTLLQ"
     gene            2987..>3269
                     /locus_tag="VLL95_16200"
     CDS             2987..>3269
                     /locus_tag="VLL95_16200"
                     /inference="COORDINATES: protein motif:HMM:NF014000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="geranylgeranylglyceryl/heptaprenylglyceryl
                     phosphate synthase"
                     /protein_id="HSR40452.1"
                     /translation="MKHRLYDIFVERKANGKKSFAVLIDPDKVNERALDELVQLATDA
                     QVDYFFLGGSLVISNHLDECVKHIKAQSDIPVILVPGSPSQVSTYAEALL"
BASE COUNT          760 a          804 c          878 g          827 t
ORIGIN      
        1 cctgtaaaat taccctgccc acaggccggt ggaatgaccg ccatcattgc aaagcatgag
       61 ccttcacagc agccccggtg acaattggca cgctcatgcc tggtgctgcc atcatatacc
      121 caatgtgtgg tattgcagcc gcccggcaat tgccgtaatg ttgaaagaaa caagtcacta
      181 tgaaatcatt attactgggt tgtatcctca tgttgggtat ggccgccact gcacagaaat
      241 cgccaccaaa aattccggtg aagggagaac tggtgaaggt gaaagaatgg ggaggactct
      301 ctgtttatat catgggatca tttttcaatg aaaccaaagc cgatattatt ggtaaaatcg
      361 gtgaagaaga gttcaatatc atgaaggaca ggtgtacgga gaagggctgg ccggaagggt
      421 tttataattc ggataacgag gaggaacgca attcactcaa gatgtatcgt attgcagcgt
      481 atacgcacat attcaatgga aagtccttcc aggaatatgc catccttcgg atcccctacg
      541 aggaaaacaa gggctggaaa cccaatgtta agtgggaagg caatttgtat ttcctggtac
      601 cgaatgaggc ggtgaccatt gcccaatagc tataagattg cgtgacttca taaaacaaaa
      661 aagaaccgcc gggtaactgg cggttctttc tattgaatct ggttgctgat cactgcagca
      721 gtgtgctgct gacagcaact ttgtctttca tgagttcttt ggctgctgcc acgatgccgt
      781 tcacatcgta accgcattcg gcgtgcagtt ctttggggct gccatgttct acaatgcgat
      841 cggggatgcc cagcattttc acctgtgcct ggtagttgtg ctgtgccatg aattcgagaa
      901 tggcactgcc aaagccgcca actgtggtac catcttccac ggtcacgatc ttgctgtatt
      961 tgctgaatac ctcatgcagc agtgcttcat caattggctt ggcaaagcgc atgtcgtaat
     1021 gccccgggtt gatgccgtat tgtttcaatt ccacaatggc actcttggca aaattgccag
     1081 ggtggccaaa gctgaggatc gctatctctt cgccgtcccg cagtttgcgg cccttgccaa
     1141 tttcaatcgc ttcaaaaggg gtacgccatt cgggcatcac accttcacct cgaggatagc
     1201 gaatgaccat tggcagcgta gtgctttcca gttgggaagt atacatcagg ttgcgcagtt
     1261 cctgttcgtt catgggcgca ctgatgatca tgttgggaat gcagcggaaa taggggatgt
     1321 cgtaagcgcc atggtgggtg gggccatctt cgcccaccag cccggccctg tcgaggcaga
     1381 gggtcaccgg cagtttttgg atggcaatgt cgtgcaccac ctggtcgtag gcccgctgca
     1441 tgaagctgct gtagatattg cagaacaccc gcagcccttg cgtggccagg cctgcactca
     1501 cggtggcggc atgctgttcg catatgccca cgtcgatggc ccggtcgggc atcttttcca
     1561 tcatgaattt gagagaagaa ccgctgggca tggccggcgt tacgccccac actttcgggt
     1621 tcatttcggc cagttcaatg atggtatggc caaatacatc ctggtatttg gggggctgtg
     1681 gcgcatcgaa tttctttttc acgatctcgc cggtcacctt gtcgaacagg ccgggcgcat
     1741 gccatttggt ctggtctttt tcggccagcg catagccttt gccttttacg gtcactatgt
     1801 gcaggatctt tggcccgggg atcttcttca ggtcttcgag ggtatccacc agtttggtga
     1861 tgttgtgccc gtcgatgggg ccgaaatagc ggagcttcag cgcctcaaac aggttggaac
     1921 tgctgctgat ggcgcccttg aggccttcgg ccactttgtg tgccatggcc cgggtgaagt
     1981 ttttgcccac gggaagtttg ccaatggcat tccatacctc atccttcagt ttattgtagg
     2041 tggggctcag cgagatatca gtcaggtatt ctttgagggc gcccacgttg gggtcgatgc
     2101 tcatgcagtt gtcgttgagg atgatgagca tgtcggcatc gctcaccccg gcatggttca
     2161 tggcttcgaa ggccataccc gccgtcatgg caccatcgcc gatcaccgca acgcttttcc
     2221 ggttttcccc tttgtatttg gctgccagcg ccatgcccag tgcagccgat atggaggtag
     2281 atgagtggcc cacgccaaag gtgtcgtatt cgctttcgct gcgcttgggg aagccgctca
     2341 gtcctttgta cttgcggttg gaggggaata catcgcgacg gccggtcagt attttatgcc
     2401 cgtatgcctg gtggcctaca tcccatacca attggtcgta aggggtatta tatgcgtagt
     2461 ggagggcaac actcagttct accacaccca gactggcgcc aaagtggcct ccgtgcacgc
     2521 ttaccacatc aatgatgtat tgacggagtt cgtcgcacac ctggtgcagt tgttcacgac
     2581 tcagcttttt gaggtcagca gggctgtcaa tgtttttcag cagcggaccg ggcgtaatat
     2641 gcatactcat gagctcaaat acaagttggc aaaaataggt aatgaggact gcttgcctgt
     2701 ggtttggctg gcaagcaatg gttaaagaaa cagccaataa tgcaataaag ttctaaacaa
     2761 aatcaaactg tgggaaaaat ccctggccgc tgcaagggga ataaaggcgc ggaatcagtg
     2821 ggcttgaagg gctaaaaccg caaaaacacc agaaagcggc aaaacctgga cagggaactc
     2881 cagctttttg aaagtcaact ctttattcac ctctctgcta aagaaaattg ccattgattt
     2941 tcaaccgtca caatttttat cgcatttttg tcgcacacct cattgcatga agcaccggct
     3001 gtacgacata ttcgtggaaa gaaaggcaaa cggcaaaaag agctttgcag tactcattga
     3061 tcctgacaag gtgaacgagc gggcattgga tgagttggtg caactggcca ccgatgcgca
     3121 ggtagattat ttctttctgg gaggcagcct cgtgatcagc aatcatttgg atgaatgtgt
     3181 aaagcacatt aaagcgcaaa gtgatatccc tgtgatcctt gtccccggca gtcccagcca
     3241 ggtaagcaca tacgccgagg cgctcttgt
//
LOCUS       DATIQF010000940         6561 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_288312,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000940 DATIQF010000000
VERSION     DATIQF010000940.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 6561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6561
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288312"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..562)
                     /locus_tag="VLL95_16205"
     CDS             complement(<1..562)
                     /locus_tag="VLL95_16205"
                     /inference="COORDINATES: protein motif:HMM:NF025680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HSR40453.1"
                     /translation="MKLSFKIYSTVALAALLASCSKFIDYDPVEDFQITADNFFTTPD
                     DFQKAVVGTYSPLQWIWADVVIGDVASDNSVSGGENATDQIGFQQIDDYQIVANNSYL
                     TETWKACYEGINRANWAEENKSKLDFNGKEALYGEVYFLRAFYYFELVRFFGDVPLFV
                     DRRLSASDSRQLQRAPKAEVYKQIEAD"
     gene            complement(581..3676)
                     /locus_tag="VLL95_16210"
     CDS             complement(581..3676)
                     /locus_tag="VLL95_16210"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR40454.1"
                     /translation="MKKTLRFSGLSLIMLLWVAWATAQNKTITGKVTDDKGAAISKAS
                     IIAKGTSLGTSTSDSGQFTLQVPVSTKTLVISAIGFETLEVGAGTAYLNISLVPATGK
                     LDEVVVIGYGTQKVTKVSGAIATVKGAEIEKYRPVRTEDALQGRASGVTVVSPGSPGA
                     KPTVLIRGIPSYSGTDPIVVVDGNIQTLDDLNSINAADIESVNVLKDAATTSIYGVKG
                     GNGVILVTTKSGRKNQKTEFVYNGLYGIQEVQRTIGVLNATEYAAIANEGSVASGGNL
                     IFPDISQLGVGTNWQDQIFKTAPTQQHALTARGGSEKMSYFLSGAYLSQDGIVGGGDK
                     SFFNRVTGTANLNFDLTKKLRFITNTSYVNIKGAGIPENAINGVISNALNFDPTVPVY
                     NQVPNTYGRYSTSNLILSEIINPLTQLDDTYNESNTNKWYGKLELQYDILKNLKVTSR
                     FGYTYTNIAGKSFNPLSYYGAGHINSTLNSDGTPRIGAHNSVSEYKTNFFNYVWETFG
                     NYHFKIAEDHDFDAVLGVSMSRNTGSSLNGSRQDVPFNSWDFADISAATGIAPNSGLD
                     VGSWQFERRNISYFGRLNYDYKGRYLASFTARRDGSYAFGVDNRFANFFAGSAGWVVS
                     NENFYKSKFFNYLKLRASYGATGNENVSPQFQRISTLIYSYGLGQNAGYSFGNEPTSI
                     GATIASFKNDALAWEKQLQLNVGFDVRFFKNKFSLSADYFQRDISGLLFTPTLSLYLG
                     TAALPTANIGTTKTTGVDLNLGYTDVIGKNLKLNTYVTFTTAKNLVTETNNGLITGGY
                     YGIPSQSITRFEKGFPPGYFFGWKTDGLFQNSNDIKNSATQPGAQPGDIRFVDVNNDG
                     VINADDRTQIGNPFPDFTMGWGLTLEYKGFDFTSFVYASVGNDVYRAYERNLALTNKF
                     RNVLGRWTGEGSTNDARTPRNTFIDDNLNARASDRYVEDGSFVKIKDLQVGYTFSPKT
                     LQSLKLSRIRVFAQVKNAFTFTSYSGFDPEISGGIFETGIDRGIYPQARTYSLGVDLK
                     F"
     gene            3865..>6561
                     /locus_tag="VLL95_16215"
     CDS             3865..>6561
                     /locus_tag="VLL95_16215"
                     /inference="COORDINATES: protein motif:HMM:NF019136.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triple tyrosine motif-containing protein"
                     /protein_id="HSR40455.1"
                     /translation="MLVLLVVIALVPGLVGAQNTIGLPLIRNFKQTDFKAGSQTWEID
                     QDAGGRMYFANNEGLLTFDGSYWKLFPLPNKTIMRSVVAHKSGRVYVGGQGEAGYFEA
                     DKTGFLRYHSLLEFIPAAERSFADVWDIETKGDAVYFRTSDRIFEWLNNAVKVYRAPH
                     EWLYLKAFDDYLLAQDSREGLYQLAGGKWVPVPNGGLVSDDAIQGAMVISKNDALLAT
                     IQNQLYEFTRAGLVKKGSLTQVAGNTFAMEGLNEEEFVVGTSSEGLYVVRKDGKLIQR
                     LSINEGLLDNSILSLFIDRDGNLWTGLNHGISMIAYNAPVKFIRPNKTYELSGYATMV
                     HNGHLYLGTSYGAYSVPLADTDRDLAFWQANFQFVKGSDGLVYHFEEINQQLLMAHNE
                     GTFVVNNDVASKISPEASWSFVPLSTVMPADNVLVGNYFGLKRLQFADNRFTAFPNMA
                     GIKESFRFIAIDNEQSIWASHPYRGIYRIQLSPDFTSYTHQLYTEKEGLPSALDNHVF
                     SIRNRVVFATDQGVYEFDKQQNKFVRSAFLWPALGATPVRYLKEDTDGNIWFVSGKRL
                     GVLVPKAGSSSGFTVTYFPEVTGQILSGFENVLPFNPQNIFVGSERGVIHINLEKYLR
                     SKRTPSLLLSAVRVLGKADSLVSDGFASMSGGLPAGILVQGGSMPYRFNSIHFEYSSP
                     AFGYQDNVEYSYMLEGYETDWSKWSLKTEKDYTNLPFGRYKFKVKVRSNLGAETERVL
                     YTFSINPPWHRTIYAYLVYGLLLAGLGYAMRYWHKKRLARQQQKFEEKQEQLRILHQL
                     ELEHNEKEIMRLQNEKLANEVVYKNKELAESTMHLVERTDALTKVKEELQRLYKTNPT
                     NIDIKKAINLLTEIERNNSDWDRFAASFDEVNNGFLKKLKARY"
BASE COUNT         1546 a         1555 c         1842 g         1618 t
ORIGIN      
        1 ggtcggcttc aatctgcttg tacacttctg ccttcggtgc cctttgcaat tggcgggaat
       61 cggaagcgga caaacgacgg tcaacaaaca aaggcacatc gccgaagaat cttaccagtt
      121 cgaagtagta gaaagcccgc aggaaataca cttcgccgta caaagcttcc ttgccgttga
      181 agtcgagctt gcttttgttt tcttctgccc agttggcccg gttgatgcct tcgtagcagg
      241 ctttccaggt ttcggtgagg tagctgttgt tggctacgat ctggtagtca tctatctgct
      301 ggaagccaat ctggtcggtt gcgttttcgc caccggaaac cgagttgtcg ctggccacat
      361 cgccaatcac cacgtcggcc catatccact gcaggggaga gtaggtgcct actaccgctt
      421 tctggaaatc gtcgggggta gtgaagaagt tgtcggcagt gatttgaaaa tcctcaacgg
      481 gatcgtagtc gatgaacttg ctgcacgaag ccaacaaggc tgcaagtgca acggtgctgt
      541 atattttgaa tgataatttc ataaccatgt ttttgaagtc ttagaatttc agatcgacac
      601 ccagtgaata agtacgggcc tgcggataga taccgcggtc aatgcctgtt tcaaaaatgc
      661 ccccggaaat ctcgggatcg aagccgctgt agctggtgaa ggtgaaggca tttttaacct
      721 gcgcaaatac acgtatcctg ctcagcttga ggctctgcag tgttttgggc gagaaagtgt
      781 agcccacctg caggtccttg atcttcacaa acgatccgtc ttctacatag cggtcagatg
      841 cacgggcatt caggttgtcg tcgatgaaag tgttgcgggg agtcctggcg tcgttggtac
      901 tgccttcgcc ggtccagcgg cccagcacgt tcctgaactt gttggtcagt gccaggttgc
      961 gttcgtaagc acggtataca tcgttgccta cagaggcata aacgaaggag gtaaagtcaa
     1021 atcctttgta ttccagggta aggccccatc ccatggtgaa atcggggaaa ggattgccaa
     1081 tttgggtacg gtcgtcggca ttgatcacgc catcgttgtt cacgtccaca aagcggatgt
     1141 cgccgggttg ggcgccgggt tgtgtagcgc tgttcttgat gtcgttgctg ttttgaaaga
     1201 ggccatcagt tttccagccg aagaagtagc cgggagggaa gcctttctca aagcgggtga
     1261 tgctctggct ggggatgccg taatacccac ccgtgatcag gccgttgttg gtttcggtta
     1321 ccaggttctt ggcagtggtg aaggtgacgt aggtgttcag cttcaggttc ttgccaatca
     1381 catcggtgta gccaaggttc aggtcaacac cggttgtttt ggtggtgcca atgttggcgg
     1441 taggcaatgc cgcggtgccg aggtagagcg acaaggtagg cgtgaacagc aggccgctga
     1501 tgtcacgctg gaaatagtcg gcgctcaggg agaacttgtt tttgaaaaag cgtacgtcga
     1561 agccaacgtt gagctgcaac tgcttttccc atgccagggc gtcgtttttg aacgaagcaa
     1621 tggtggcgcc gatggaagtg ggttcgttgc caaaagagta gccggcattc tggcccagtc
     1681 cataactgta gatgagcgta gaaatgcgct ggaactgtgg cgatacgttt tcattaccgg
     1741 tagcgccata gctggcccgc agtttcaggt agttgaagaa tttcgatttg tagaagttct
     1801 cattggaaac tacccatccg gcagaaccgg cgaagaagtt ggcaaacctg ttgtccacac
     1861 caaaagcata agagccatcg cggcgggcgg tgaaggaggc gaggtagcgt cctttgtaat
     1921 catagttcag gcggccgaag taggaaatat tccttctttc aaactgccag gagcctacat
     1981 cgagcccgga gttgggggca atgccggtag cagcggaaat gtcggcgaaa tcccaggagt
     2041 tgaagggcac atcctggcgt gaaccattga gcgaactgcc ggtgttcctt gacattgaaa
     2101 cacccagtac ggcatcaaaa tcgtggtctt cggctatttt gaaatggtag ttgccgaagg
     2161 tttcccatac ataattgaag aagttggtct tgtattcgct cacactgttg tgcgcaccta
     2221 tgcggggcgt gccatccgaa ttgagcgttg aattgatgtg accggcaccg tagtacgaca
     2281 atgggttgaa gctctttccg gcgatattgg tgtaggtata tccaaagcgg gaggtcactt
     2341 tcaggttctt gaggatgtcg tattgcagtt ccagcttgcc gtaccacttg ttggtgttgg
     2401 attcgttgta agtatcatcc aactgtgtca aggggttgat gatctccgac aagatcaggt
     2461 tgctggtgct gtacctgccg taggtgttgg gcacctggtt gtaaacaggg acagtggggt
     2521 cgaagttgag ggcattggaa atgaccccgt tgatggcgtt ttcaggaata ccggcgcctt
     2581 tgatgtttac ataactggtg ttcgtaatga aacggagttt tttcgtcagg tcgaaattca
     2641 ggttggcggt accggttacg cggttgaaaa aagacttgtc accgccgccc acaatgccat
     2701 cctggctgag gtaggcgccc gacaagaaat aagacatttt ctcgcttccg ccccgggcgg
     2761 taagcgcatg ttgctgggta ggtgcggttt taaagatctg gtcctgccag ttggtgccta
     2821 cgcccagttg agagatgtcg gggaaaatga ggttgccacc agaggctacg ctgccttcgt
     2881 tggcaatggc cgcgtattcc gtagcattga gcacgccaat ggtgcgctgc acttcctgga
     2941 tgccatacag gccattgtaa acgaattcag ttttctggtt tttgcgtccc gatttggtgg
     3001 tcacgaggat gacaccgttt ccgcccttca ctccatatat agaagtggtg gcggcgtctt
     3061 tcaatacgtt tacggattca atatcggccg cgttgatgga gttgaggtcg tccagggttt
     3121 ggatgttgcc atccactacc actatcgggt cggtgccgct gtatgagggg atgccccgga
     3181 tgagtacggt aggtttggcg cctggtgaac ccgggcttac cacggttaca ccggaagcac
     3241 gaccctggag ggcatcttcc gttcttaccg ggcggtattt ttcaatttcc gcacccttta
     3301 cggtggcaat ggcgcccgat actttggtca ctttttgggt accatagcct atcactacca
     3361 cttcgtccag tttgccggtc gccggcacca ggctgatgtt gagataggcg gtgcctgctc
     3421 ccacttccag tgtttcaaag ccaatggctg agatcaccag ggttttggtg gagacgggaa
     3481 cctgtaaggt aaactgtccg gaatcggaag tggaagtgcc gagggatgtg cccttggcaa
     3541 tgatggaggc cttagaaatg gcagccccct tgtcgtcggt gactttacca gtaatggttt
     3601 tgttttgtgc tgttgcccag gccacccaaa gcaacatgat caagctaagg ccagaaaagc
     3661 gcaatgtctt tttcataagc aagaaagatt tagttggata tccggagtta aataaccgga
     3721 agccaaatct agcaccgttg cctgccggcc tgaaaaaaag tggggctaca acactacatc
     3781 aaatactgat aaacaattga aaatcaataa tcgaaaacta catcattact acatcaggcg
     3841 acttgcctat ctttaattat gcgaatgctt gtactgttgg tggtgattgc attggttccg
     3901 gggctggtgg gtgctcaaaa cactattggc ctgccgctca ttcgcaattt caagcaaacc
     3961 gactttaagg cgggcagcca gacctgggaa atagaccagg acgccggcgg caggatgtac
     4021 tttgccaaca acgaggggtt gctcacgttc gacggctcgt attggaaatt gtttcccctg
     4081 cccaataaga ccatcatgcg ttcggtagtg gcgcacaaaa gcggccgggt gtatgtggga
     4141 ggccaggggg aggccgggta tttcgaggcc gataaaaccg gtttcctgcg gtaccattcc
     4201 ctgctcgaat tcatccctgc ggcggagcgt tctttcgccg atgtttggga catagaaacc
     4261 aagggggatg cggtgtactt caggacctct gatcgcattt ttgaatggct caacaatgcg
     4321 gtgaaagtgt atcgggctcc gcatgagtgg ctgtacctca aagcttttga tgactacctg
     4381 cttgcgcagg acagccgcga aggtctgtac cagttggcag ggggcaaatg ggtgcctgtg
     4441 cccaatggcg gattggtgag cgacgatgcc atccaggggg ccatggtcat ttccaaaaac
     4501 gatgccttgc tggccaccat ccagaaccag ctgtatgagt ttacccgggc cggccttgta
     4561 aaaaaaggca gcctgaccca ggtggccgga aacacatttg ccatggaagg cctgaatgaa
     4621 gaagagtttg tggtgggtac ttccagcgaa ggtctttatg tggttcgtaa agacgggaaa
     4681 ctcatccagc gcctttcgat caacgagggt ttgctcgaca acagtatcct cagtttgttc
     4741 attgacaggg acggcaactt gtggaccggc ctcaaccatg gcatcagcat gattgcctac
     4801 aacgcaccgg tcaaattcat cagaccgaat aagacttatg agctttcggg ctatgccacc
     4861 atggtgcaca acgggcattt gtacctgggc acctcttatg gcgcctactc ggtgccattg
     4921 gctgataccg acagggacct tgctttctgg caggccaact ttcaatttgt aaaaggcagc
     4981 gatggcctgg tataccattt tgaagagatc aaccagcaat tgctgatggc ccataatgaa
     5041 ggcacttttg tcgtcaacaa cgatgtggct tcaaaaattt cgccggaagc ttcctggtcc
     5101 tttgtaccgt tgagtacggt aatgcctgct gataatgtgc tggtcggaaa ctatttcggg
     5161 ctcaagcggc tgcagtttgc cgataaccgt ttcaccgctt ttcccaatat ggcagggatc
     5221 aaggaatcct ttcgcttcat tgccattgat aatgagcagt ccatttgggc atcgcaccct
     5281 taccgtggca tttaccggat acaattgtcg cccgatttca cttcctacac ccaccaattg
     5341 tataccgaaa aagaaggtct tccttcggcc ctcgacaacc atgtgttcag catcaggaac
     5401 cgtgtggtat ttgccaccga ccagggggtg tatgaatttg acaagcagca aaacaaattt
     5461 gtacgatcgg cttttttatg gccggcattg ggagccaccc cggtgcgcta cctgaaagag
     5521 gataccgacg gcaatatctg gttcgtttcc gggaaaagac tgggggtatt ggtacccaaa
     5581 gcaggcagca gcagtggctt cacggtcacc tacttcccgg aagtgacggg gcagatcctt
     5641 tcaggatttg aaaacgtgct gcccttcaat ccgcaaaaca tttttgtggg ttcggaacgc
     5701 ggggtcattc atatcaacct tgaaaaatac ctgcgcagca aacggacgcc ttcgctgttg
     5761 ttgtcggctg tacgggtgtt gggaaaagcg gacagcctgg tgtcggacgg atttgccagt
     5821 atgtcgggcg gactccctgc aggaatactg gtgcagggtg ggagcatgcc ctaccgtttt
     5881 aattccattc actttgaata cagttcgccc gcctttggtt accaggacaa cgttgaatac
     5941 agctacatgc tggaagggta cgagaccgat tggagcaaat ggtcgctaaa gacagagaag
     6001 gattatacca acctgccatt tggacgttac aagttcaagg taaaagtgcg gagcaacctc
     6061 ggcgccgaaa cggagcgggt attgtacacc ttcagcatca atccgccctg gcatcgtacc
     6121 atttatgcct acctcgtgta tggtttgctg ctggcaggct tggggtatgc catgcggtac
     6181 tggcacaaaa aaaggctggc caggcaacag cagaaatttg aggaaaaaca ggagcagttg
     6241 cgcatcctgc accagctgga actggagcac aacgaaaagg agatcatgcg cctgcaaaat
     6301 gaaaaactgg ccaacgaagt ggtttacaaa aacaaggagt tggcagaatc caccatgcac
     6361 ctggtggagc gcaccgatgc gctgaccaag gtgaaggagg aattgcagcg gttgtacaaa
     6421 acaaatccca ccaatatcga catcaaaaaa gccatcaacc tgcttaccga aattgaaagg
     6481 aacaattcgg attgggatcg ctttgcggct tcgtttgatg aagtgaacaa cggttttctc
     6541 aagaagctga aagcacgcta c
//
LOCUS       DATIQF010000941         4899 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_105855,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000941 DATIQF010000000
VERSION     DATIQF010000941.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4899
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105855"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..181
                     /gene="rpsH"
                     /locus_tag="VLL95_16220"
     CDS             <1..181
                     /gene="rpsH"
                     /locus_tag="VLL95_16220"
                     /inference="COORDINATES: protein motif:HMM:NF012627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HSR40456.1"
                     /translation="ITSMERVSRPGLRQYSKPGDFKRVMNGLGIAIISTSKGVMTDKE
                     AKAQNVGGEILCHVY"
     gene            271..825
                     /gene="rplF"
                     /locus_tag="VLL95_16225"
     CDS             271..825
                     /gene="rplF"
                     /locus_tag="VLL95_16225"
                     /inference="COORDINATES: protein motif:HMM:TIGR03654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HSR40457.1"
                     /translation="MSRIGKKPVVIPSGVTVTVGADNTVTVKGPKGELKQAVDRDILV
                     EVADGTLNVGRPTDQIRHRAMHGLYRALIANMVKGVTEGFSKKLELVGVGYKASNTGN
                     LLDLSLGYSHNIIIEIPKELKVATAQEKGKNPEIVLEGIDNQLLGQVCAKIRSLRKPE
                     PYKGKGVRFAGEVVRKKAGKSAGK"
     gene            896..1249
                     /gene="rplR"
                     /locus_tag="VLL95_16230"
     CDS             896..1249
                     /gene="rplR"
                     /locus_tag="VLL95_16230"
                     /inference="COORDINATES: protein motif:HMM:NF013057.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HSR40458.1"
                     /translation="MDKKVISRKKIHYRIRKRIVGSAAKPRLNVFRSNADIYVQLIDD
                     ANGVTLAAASSRDKDIAAQKVTKTEKSKLVGGTIARKATELGIKECVFDRGGFLYHGR
                     VKAVADGAREGGLEF"
     gene            1328..1846
                     /gene="rpsE"
                     /locus_tag="VLL95_16235"
     CDS             1328..1846
                     /gene="rpsE"
                     /locus_tag="VLL95_16235"
                     /inference="COORDINATES: protein motif:HMM:TIGR01021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HSR40459.1"
                     /translation="MAKAILNRVKAGDLELKEKVVAINRVVKTTKGGRTFSFSALVVV
                     GNENGVVGHGLGKAKEVQEAITKGIEDAKKNLVKVPVMHGTIPHEQFVKEGAAKVLLK
                     PAAHGTGVIAGGSMRAVLESAGITDVLAKSLGSANPHNVVKATFTALATLKEPVEVAK
                     RRSISLKKVFNG"
     gene            1936..2124
                     /gene="rpmD"
                     /locus_tag="VLL95_16240"
     CDS             1936..2124
                     /gene="rpmD"
                     /locus_tag="VLL95_16240"
                     /inference="COORDINATES: protein motif:HMM:TIGR01308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HSR40460.1"
                     /translation="MKKIKITQVKSVIDRPERQKKTMEALGLRKMHATVEKEATPQIL
                     GMVEKVQHLVKVEEVAEA"
     gene            2251..2700
                     /gene="rplO"
                     /locus_tag="VLL95_16245"
     CDS             2251..2700
                     /gene="rplO"
                     /locus_tag="VLL95_16245"
                     /inference="COORDINATES: protein motif:HMM:TIGR01071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HSR40461.1"
                     /translation="MKLHNLKPAEGSTHKQKRLGRGEASGKGGTSTKGNKGQQQRAGY
                     ASKMAHEGGQMPIQRRIPKRGFKNPHRVSYKVFNLGQVEQLVEKYELKEFSLDNLYIN
                     GLVNQTDLVKVLGVGEIKTAVAFKVNAASAKAKAAIEAAGGSLEIVK"
     gene            2787..4124
                     /gene="secY"
                     /locus_tag="VLL95_16250"
     CDS             2787..4124
                     /gene="secY"
                     /locus_tag="VLL95_16250"
                     /inference="COORDINATES: protein motif:HMM:TIGR00967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HSR40462.1"
                     /translation="MKKFLETIKNIWTIDELRQKIVVTLALLITYRLGTHIVLPGIDP
                     NALEAVKGKTTGLLGLFDQFAGGAFSQASILALGIMPYISASIFMQLVTILVPQFQKI
                     QKEGESGRKKINQWTRYLTVLVTVFQAAAYITYLQSPGYKEALIPAYEPYFVVSTVIL
                     LTSGTLFVMWLGEKITDKGLGNGTSLIIMVGILARLPQSFVQEFTAKNSKGGGGVLVF
                     IIEIAILIAIIMGLIVLVQGVRKITINYAKQIVGNKQFGGARQFLPIKVNSAGVMPII
                     FAQAIIFIPTIFARFDTTGGFMKILNDHSNGWYMLIYAVLVIAFTYLYTAIIFNPKQI
                     ADDLKRNNGFIPGVKPGQPTADYIGSVMDKVTLPGAILLALVGILPGIAQRLGVTGGF
                     SSFFGVTSLLIMVGVILDTLQQIETHLLMRQYDGLMSGGRIQGRQPVTSSPIG"
     gene            4238..>4899
                     /gene="map"
                     /locus_tag="VLL95_16255"
     CDS             4238..>4899
                     /gene="map"
                     /locus_tag="VLL95_16255"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR00500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HSR40463.1"
                     /translation="MSLFKKYREVIICKTKEEIELMRHSNELVGQTIAHLASMLKPGI
                     TTQQLDLVAGQLIRDNGGVPSFLNYHGYPYNTCISVNDAVVHGFPSNLELKEGDVVSI
                     DCGVFKNGFHGDSAYIFAIGNPGEDVMELLRVTKASLYKGIEKAVANNRVGDIAFAIQ
                     DFTERKHGYGVVRELVGHGIGRSLHEDPQVPNFGKRGNGAKLVPGMTIAIEPMINMGK
                     KDV"
BASE COUNT         1351 a         1135 c         1244 g         1169 t
ORIGIN      
        1 tatcacttct atggagcgtg ttagccgtcc tggtttgcgt cagtactcca agcctggtga
       61 tttcaaaagg gtgatgaacg gcctcggcat tgccatcatc agcacttcaa aaggtgtaat
      121 gactgacaag gaagccaaag cgcagaatgt aggtggtgaa atcctttgcc acgtttatta
      181 atagaacagc caatgctttc tgacaatata agcctttagt cggggctgaa aacggaaagc
      241 gattcaataa aagcaaaatc aaattcgact atgtctcgta taggaaaaaa accggtagtg
      301 atccccagcg gcgttaccgt aactgtaggt gctgataaca ccgtaaccgt gaaaggtcct
      361 aaaggtgaat tgaagcaggc agttgaccgt gatatcctgg tggaagtggc cgatggcaca
      421 ctcaatgtgg gtcgtcctac tgatcagatc cgtcaccgcg ccatgcatgg tttgtaccgt
      481 gcccttatcg ccaacatggt gaagggtgta actgaaggtt tcagcaagaa gctggaactg
      541 gtaggtgtgg gttacaaagc cagcaatacc ggcaacctcc tcgatctttc tttgggttat
      601 tcgcacaaca tcatcatcga aatcccgaag gaactgaaag tagctaccgc ccaggaaaaa
      661 ggtaagaacc ccgagatcgt actggaaggc atcgacaacc agttgctcgg ccaggtatgc
      721 gccaagatcc gcagccttcg caagcctgag ccttacaaag gcaagggtgt tcgcttcgct
      781 ggtgaagtgg ttcgtaagaa agctggtaag tctgctggta aataattgag taagcaggta
      841 aacagtaaat tctaactaaa gaaaatatgc tccctcagga gccggaggat ataaaatgga
      901 caagaaagta atttcaagga aaaaaatcca ctaccgcatt cgcaagcgta tcgtgggtag
      961 cgctgccaag cctcgtctga acgtatttcg cagcaatgct gacatctacg ttcaactgat
     1021 tgatgacgcc aacggagtaa cccttgctgc tgccagcagc cgcgacaagg acattgctgc
     1081 tcagaaagtg actaaaactg aaaagagcaa gctggtgggc ggtaccattg cccgcaaggc
     1141 taccgaactg ggcatcaaag aatgcgtgtt tgaccgtggc ggctttttgt accatggccg
     1201 tgtaaaggct gtggccgatg gtgcccgcga aggaggcctt gagttttaat cagcataagc
     1261 gcctcaacca atatcaacaa ttgtaaatca atacctgcgg caagcaggtg aaacagaaaa
     1321 gaatacaatg gcaaaagcta ttttgaaccg cgtaaaagct ggcgacctcg aactgaagga
     1381 gaaggtggta gctattaacc gtgtagtaaa aactaccaag ggtggacgta cattcagctt
     1441 ctcagctttg gtggtagtag gcaacgaaaa cggtgtggta ggccatggtc ttggtaaggc
     1501 caaggaagtt caggaagcca tcaccaaagg cattgaagat gccaagaaaa acctggtaaa
     1561 agtgcccgta atgcacggaa ccattcctca cgagcagttc gtgaaagagg gagccgccaa
     1621 ggttttgttg aagcccgccg cccatggtac tggtgtgatt gccggaggca gcatgcgtgc
     1681 tgtactggaa agcgcaggta tcaccgacgt actggccaag agcctcggtt ctgccaatcc
     1741 gcataacgtg gtaaaagcca cctttaccgc cctggctacc ctgaaagagc cggttgaggt
     1801 tgccaagcgt cgcagcatct ctctgaaaaa agtattcaac ggataatttt tgtttgacgt
     1861 ttgatgtttg atgtggcaag gatctccgga tcaaagaaat caaacctcaa gctttgaact
     1921 tcaaacctca taacgatgaa gaagatcaag atcacccagg taaaaagcgt tatcgatcgt
     1981 cctgagcgcc agaagaaaac aatggaagct ctgggcctgc gcaaaatgca tgctacagtt
     2041 gaaaaggaag ctactcctca gatcctgggt atggtagaaa aagttcagca cctggtaaag
     2101 gtggaagaag ttgctgaagc ttaatttcca ataaaaaaat tcaagattcc aaattcctgc
     2161 atcagaacgt ggtgtgcgga atttggaatt tcattattct atttcttaac caagcgaggg
     2221 gagtaaaccc cgtaagtaaa aacaaacagt atgaaactgc acaatttgaa gcctgcagaa
     2281 ggcagcacgc acaagcaaaa gcgtctgggt cgtggtgaag catccggtaa aggtggtact
     2341 tcaaccaagg gtaataaggg tcagcagcag cgtgccggtt atgccagcaa aatggcccac
     2401 gaaggtggtc agatgcctat tcagcgtcgt atccccaagc gtggtttcaa aaaccctcac
     2461 cgtgtatctt acaaagtgtt caacctgggc caggtagagc aactggtaga aaaatatgaa
     2521 ctgaaagaat tcagcctcga taacctgtat atcaacgggt tggtaaacca aaccgacctg
     2581 gtgaaagtac tgggtgttgg cgaaatcaag accgctgttg cattcaaagt gaacgcagcc
     2641 agcgccaagg ccaaagcagc tatcgaagct gctggtggtt cacttgaaat tgtgaagtaa
     2701 tccggcagtg caaaagttcc tttcgaagcc tcgaaaggaa ctcttgtttt acctacattt
     2761 gaggcccttt aaattgactg aattccgtga agaaatttct tgaaacaatt aagaatatct
     2821 ggacgataga tgagctgcgc caaaagatag tggttacact ggcgttgctg atcacctatc
     2881 gtttgggtac gcatatcgta ttgcccggta ttgatcctaa cgcactggag gcagtgaaag
     2941 gcaaaacaac cggtttgctg ggtcttttcg accagttcgc cggcggcgcc ttttcgcaag
     3001 cttctattct tgccctgggt atcatgcctt acatctctgc ttctatcttc atgcaattgg
     3061 taaccatcct ggttccgcaa ttccagaaga tccagaagga aggagagagc ggacgtaaaa
     3121 agatcaacca atggacacgt tacctcactg tactggtaac tgtattccag gctgcagcct
     3181 atatcactta cctgcaaagc cccggttata aagaagcatt gatccctgct tacgaaccct
     3241 actttgtggt gagcaccgtg atcctgctta cttccggcac cttgttcgta atgtggctgg
     3301 gtgaaaagat caccgacaaa ggtttgggta acggtacctc tctcatcatc atggtgggta
     3361 tcctggcccg tttgccgcaa agctttgtgc aggaatttac tgccaagaac tctaaaggtg
     3421 gtggtggtgt actcgtgttc atcatcgaaa tcgccatcct tatcgccatc atcatgggtc
     3481 tgatcgtatt ggtacagggt gttcgcaaaa tcaccatcaa ctatgccaag cagatcgttg
     3541 gcaacaagca gtttggtggt gcccgccagt tcctgcccat taaggtgaac agtgctggtg
     3601 taatgcccat catctttgcc caggccatca tcttcattcc taccattttc gctcgtttcg
     3661 atactaccgg tggtttcatg aagattttga atgaccacag caatggctgg tacatgctca
     3721 tctacgctgt attggtaata gcatttacct acctctatac tgccatcatc ttcaacccca
     3781 agcaaattgc cgatgacctg aagcgcaaca acgggttcat ccccggcgtg aagcctggtc
     3841 agcctacagc cgattacatc ggttctgtaa tggataaggt gacgcttccc ggcgctatcc
     3901 tgctggcttt ggtaggtatc ctgcctggta ttgcccagcg tttgggtgta accggtggtt
     3961 tcagcagctt ctttggtgtc accagcctgc tgattatggt gggtgtaatt ctcgataccc
     4021 tccagcagat tgagactcac cttttgatgc gccagtacga tggtttgatg agtggtggtc
     4081 gtatccaggg tcgtcagcct gtgaccagct cacctatcgg gtaactgaag ttgaaaacaa
     4141 agcacataac attgaatacc tgcctcaacc ggcaggtatt tttatattac cattgggccc
     4201 ctaaagtgcg caggcattcg tttctttgca gccgtttatg agccttttta aaaagtatcg
     4261 tgaagtgatt atttgtaaga cgaaagaaga aattgaactg atgcggcaca gcaacgagct
     4321 ggtggggcaa acgattgctc acctggcttc tatgctcaaa cccggcatca ccacccaaca
     4381 actggacctg gtggccggac aactgatccg ggacaatggc ggcgtaccca gttttctcaa
     4441 ctatcatgga tatccgtaca atacctgcat cagcgtgaat gacgcggtgg tgcatggctt
     4501 ccccagcaac ctcgaattga aagaaggcga tgtggtgagc atagattgtg gcgtattcaa
     4561 gaatggcttt cacggcgaca gtgcttacat ttttgctatt ggcaaccccg gcgaagacgt
     4621 gatggagttg ttacgggtga ccaaagcatc gctgtacaaa gggattgaaa aagcggtggc
     4681 caacaacagg gtaggagata tcgcatttgc catccaggat tttaccgaac gcaagcacgg
     4741 ttatggcgtg gtgcgagaat tggtggggca tggcataggc cgcagcctgc acgaagatcc
     4801 gcaggtgccc aattttggca agcgtggcaa tggcgccaaa ctcgtgcccg gcatgaccat
     4861 cgccattgag cctatgataa acatgggtaa aaaggacgt
//
LOCUS       DATIQF010000942         1501 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_182256,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000942 DATIQF010000000
VERSION     DATIQF010000942.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182256"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..759
                     /locus_tag="VLL95_16260"
     CDS             <1..759
                     /locus_tag="VLL95_16260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40464.1"
                     /translation="SVKVEIVNEQGRTVRKLNLMASKGMNRFYWDLTNDGLRMPVQPK
                     PKSEVQAPPGAYVIAGNYKVRIKYGSEADSAMVKVNNDPRKQVDAAGVAVWQAGYEEF
                     TSTVNGVTASMDKLRDAKDQMNAVEKMVSAQVKDTAAKKRFADAHKLASKQVDSLMRL
                     VAPGEEIQGIYEDPSQLMNKLMGAAFYLDPAFGTPNPPASAPPATFGWSMKKLKADAG
                     AFNEAVKAFENKTWKQFEEVVKGLNLQLLPPLGQ"
     gene            864..>1501
                     /locus_tag="VLL95_16265"
     CDS             864..>1501
                     /locus_tag="VLL95_16265"
                     /inference="COORDINATES: protein motif:HMM:TIGR01475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008412 - 4-hydroxybenzoate
                     octaprenyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA-like polyprenyltransferase"
                     /protein_id="HSR40465.1"
                     /translation="MTTIKNYLSLVKFSHTIFALPFALIGFFVGIIFLDQIPWVKAAV
                     EMRDEPKEKIFLFFQSHWYLFVLVLLCMITARSAAMAFNRYLDRHFDAQNPRTAIREI
                     PAGIIGPNSALRFVILNAFIFITATYFINTICFFLSPVALFVILFYSYTKRFTALCHL
                     VLGLGLRLAPIGAYLAVTGEFAVLPILFSFTVLFWVSGFDIIFALQDEAFDR"
BASE COUNT          369 a          335 c          384 g          413 t
ORIGIN      
        1 tctgtaaaag tggaaatagt gaatgagcaa ggccgcaccg ttagaaaact gaatctgatg
       61 gccagtaagg gtatgaaccg cttttactgg gatttgacca atgatggtct caggatgccg
      121 gtgcagccta agcccaaatc ggaagtacag gcgcctcccg gtgcttatgt gatagcagga
      181 aactataaag tgagaataaa gtatggctcg gaggcagact ctgccatggt gaaagtgaac
      241 aacgatccac gcaagcaggt ggatgctgca ggagttgctg tatggcaagc gggctatgaa
      301 gaattcacca gtaccgtgaa tggggttacc gcaagtatgg acaaacttcg tgatgccaaa
      361 gaccaaatga atgccgtgga gaaaatggtg tcagcacagg tgaaggatac tgctgccaaa
      421 aagcgttttg ccgatgcgca caaacttgct tcaaagcagg tggattcatt gatgaggttg
      481 gtggctccag gcgaagaaat ccagggcatt tatgaagatc cttcgcaact gatgaacaaa
      541 ctaatgggag cggctttcta cctcgatcct gcatttggta cgcctaaccc gccagcgtcg
      601 gcccctccag ccacctttgg atggtccatg aaaaaactga aggcggatgc cggtgcattc
      661 aatgaggcgg taaaagcttt tgaaaacaaa acctggaaac agtttgaaga agttgtgaaa
      721 gggctcaacc tgcagttgct gccacctttg gggcaataag gggcacgtat taattcaaat
      781 caaaacaggc cggcgaaaac cattcgccgg ccttaatatg aaatgtcgca aattgcgatg
      841 cctacttttg gctggtaaaa gctatgacaa ccattaagaa ctatttgtcg ctggtcaagt
      901 tttcgcatac catcttcgcc ttgccctttg cgttgattgg tttttttgtg gggattatat
      961 ttctggatca gattccctgg gtaaaagcgg cagtggaaat gcgtgatgag cctaaggaga
     1021 agatctttct cttttttcaa agtcattggt acctgtttgt tttggtgctg ctatgcatga
     1081 tcactgcccg cagcgctgcc atggccttca accgctacct cgatcgtcat ttcgatgcgc
     1141 aaaacccacg taccgctatt cgcgaaatcc cggctgggat cattggtcct aacagtgctt
     1201 tgcgtttcgt tattttgaac gcgtttattt ttattacagc gacttatttc atcaatacca
     1261 tttgtttctt cctgagcccg gtggcgttgt ttgtcatctt gttttacagt tataccaagc
     1321 gcttcacagc cttgtgccat ttggtgctgg gcctgggttt aagactggca cctatcgggg
     1381 cctatctcgc cgtcacgggt gagtttgccg ttttgcccat tcttttctcg ttcactgttt
     1441 tgttttgggt cagtggcttc gatatcattt ttgccctgca ggatgaagcc ttcgatcgca
     1501 g
//
LOCUS       DATIQF010000943         2149 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_258235,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000943 DATIQF010000000
VERSION     DATIQF010000943.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2149
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258235"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            192..863
                     /locus_tag="VLL95_16270"
     CDS             192..863
                     /locus_tag="VLL95_16270"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HSR40466.1"
                     /translation="MDRRKSIKALALGSLSTAVFIDACKPADEKSKAATETPAGQFTY
                     DRMKEEKEHDEKLMKEKFFTDHELQTITVLADIIIPADEVSGSASQAGVPAFIEFIVK
                     DMLSHQTPMRGGLRWLDMHCLKTYEKPFIELSEAQRIEVVDAIAFPKKAKPEMAQGVA
                     FFSLMRNLTASGFYTSEMGVKDIGYVGNAPNQWNGVPDEVLKQYGIAYTEKELKECIS
                     FNNAS"
     gene            994..1716
                     /locus_tag="VLL95_16275"
     CDS             994..1716
                     /locus_tag="VLL95_16275"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HSR40467.1"
                     /translation="MSIKKSSRSNFLKTAGLAGAGFIIVPRHVLGRGYVAPSDKLNIA
                     GIGAGGKGASDMNEFAKGGKANIVAFADVDEKQAAGSVKKFPNAKFYFDYREMLEKEK
                     NNIDAVSVSTPDNTHAVATMAAIMLGKHVYVQKPLTHDIYEARMLTEAARKYKVVTQM
                     GNQGGSGEGVRKMQEMYQAGLIGEVSQVYAWTNRPVWPQGIPTPSGKHDVPSNFKWDL
                     WLGPAQWTEYNPAYHPFNWRGW"
     gene            1744..>2149
                     /locus_tag="VLL95_16280"
     CDS             1744..>2149
                     /locus_tag="VLL95_16280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40468.1"
                     /translation="MACHILDPAYRILPILYPNEVECSIPNQFTAAWTEAGYVDSCPQ
                     ASIIHLNYPRTDGKGNVKLTWMDGGLLPQRPDELLPEEEMGNWDGGILFVGSKGKILA
                     DCYGDNPRLLPTRLMKEEAREKEGHKEPDAEEE"
BASE COUNT          618 a          482 c          590 g          459 t
ORIGIN      
        1 acatcacctg gaccatcctg gcgttgagca tgcgtgccag cgaatacatc attgatgtaa
       61 tgaagaaaca gaacctgtga gcataatgac gaatgatgaa tgatgaatga tgattgatga
      121 ttgatgattg atgatttgta agtcatagca actaacaaca aacaaccgac aacaacccaa
      181 aatcttcttc catggacaga agaaaatcga taaaagcact ggcactggga tcattgagta
      241 ccgcggtatt cattgatgcc tgcaaacctg ctgatgaaaa aagcaaggcg gctacggaaa
      301 cccctgccgg tcagtttact tacgaccgca tgaaggagga aaaggagcac gatgaaaaat
      361 tgatgaagga gaaattcttc accgatcatg agctccaaac cattacggtg ctggccgaca
      421 tcatcattcc tgccgatgag gtgagcggca gcgcttcgca agcaggcgtg ccggcgttca
      481 ttgagttcat tgtaaaagac atgctcagcc accagacacc catgcgaggc ggacttcgct
      541 ggttggatat gcattgcctg aagacttatg aaaagccttt cattgaactg tctgaagcgc
      601 agcgtataga agtggtggat gccatagcct tccccaaaaa ggcaaagcca gaaatggcgc
      661 agggggtagc gttcttttca ttgatgcgca accttacggc cagtgggttc tatacctctg
      721 aaatgggtgt aaaagacatc ggttacgtag gcaatgctcc caaccagtgg aatggtgtgc
      781 ccgatgaggt attgaaacaa tatggcattg cttacacaga aaaggaactg aaggaatgca
      841 tcagttttaa taatgcgtcg tgaggcgaga ggtgaatgag tgaatgaaca agttaatgag
      901 tcaataagtg aatgagtcaa ttggtgaatg agtggttggg ttggccaaca aaaaagacaa
      961 acgaaaaaca agaaacatat tcaatcgatt tgcatgtcca ttaaaaaatc atcccgcagt
     1021 aattttctga aaacggcagg cctggccgga gccggattca tcattgtgcc acgccatgta
     1081 ctgggtcgtg gttatgtagc acccagtgat aagctgaaca ttgccggcat tggcgccggt
     1141 ggcaaggggg ccagcgatat gaatgagttt gccaagggcg gcaaggccaa tatcgtggcg
     1201 tttgccgatg tggatgaaaa gcaggctgct ggttcagtaa agaaatttcc caacgccaag
     1261 ttttacttcg actaccgcga aatgctggag aaggaaaaga acaacatcga cgcggtgtcc
     1321 gtttcaaccc ctgacaacac gcatgccgta gccaccatgg ctgccattat gctgggcaag
     1381 catgtgtacg tgcaaaagcc attgacgcat gatatttacg aagcccgtat gctcacagaa
     1441 gctgcccgca aatacaaagt ggtaacccag atgggcaacc aggggggcag tggcgaaggc
     1501 gtacgcaaga tgcaggagat gtaccaggct gggttgattg gcgaggtaag ccaggtgtat
     1561 gcctggacca accgcccggt atggccacag ggtattccta caccctccgg caagcatgat
     1621 gtgccgtcga acttcaaatg ggatctgtgg ctgggcccgg cacaatggac agaatacaac
     1681 cctgcttacc atccttttaa ctggcgtggc tggtgagctt ttggtaccgg agcgctgggc
     1741 gatatggctt gccacatcct cgatccggct taccgcatat tgcctatcct gtatcccaat
     1801 gaagtggagt gcagcatccc caaccagttt acggctgcat ggacagaagc cgggtatgtg
     1861 gacagttgcc cgcaggcgtc tatcattcac ctcaactacc cgcgaaccga tggcaaaggc
     1921 aatgtaaaac tcacctggat ggatggcggc ttgctacccc aacgccccga tgaattgttg
     1981 ccggaagaag aaatgggcaa ctgggatggt ggtatcctgt ttgtgggtag caagggaaaa
     2041 atactggccg attgttatgg cgacaatccc cggttgttgc cgaccaggtt gatgaaggaa
     2101 gaggcgagag agaaggaggg acataaggaa ccagatgcag aagaagaac
//
LOCUS       DATIQF010000944         4168 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_105956,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000944 DATIQF010000000
VERSION     DATIQF010000944.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4168
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105956"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1135
                     /locus_tag="VLL95_16285"
     CDS             <1..1135
                     /locus_tag="VLL95_16285"
                     /inference="COORDINATES: protein motif:HMM:NF016612.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="neutral/alkaline non-lysosomal ceramidase
                     N-terminal domain-containing protein"
                     /protein_id="HSR40469.1"
                     /translation="AAFIAGGRNNRRFTGVHDSLYVKVIAISDAKNHIVMVSFDCIGM
                     LYPTLVAIRKEIASQLPASAFNPGHIVMNSTHTHSGPDVVGIWGPDQMTSGVDSAYMR
                     RVVTTTVNAIVQAWKNRQDATMVYAETEFGQDWVYNISDSLNLDRSLSVLQFLDRNGK
                     SIGTLTNFACHPTILDGANSLVSSDYPGAMYQQLDQQLGGTNIFLNGSIGGWVQPEYE
                     PKTFESVNRRGGELAAAVLNALKQPKTMSHSVIGYKSMVFRLPVSNPGFRQLAAAGVI
                     DRAMTDSVETELAFFSLGDAQFVTHPGETSPTYAKASKKKMKNNGPRFVIGLGMDALG
                     YILTPEFYVPGTKMKHAGYLTGMSVDRNAGEIIMQKIDLLTRQ"
     gene            1276..1404
                     /locus_tag="VLL95_16290"
     CDS             1276..1404
                     /locus_tag="VLL95_16290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40470.1"
                     /translation="MRRESKAITLDNEQDDRKANFRQEKIDGQIIHLITSKGNGQL"
     gene            1517..3361
                     /locus_tag="VLL95_16295"
     CDS             1517..3361
                     /locus_tag="VLL95_16295"
                     /inference="COORDINATES: protein motif:HMM:TIGR01512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HSR40471.1"
                     /translation="MNNSPAFFSRQFFWEIIRIITVGLASLLFYLQFVPLFILLAAMA
                     FGLYALVKAAASELIREKKIGTELFITIAVVVSVLGKEYLAGAVVLMIILIAEYIASA
                     SGERAKVAIKGLIGSVPKTAIVKRNGTEEIVPIADLQVGDVVLVTAGDKIPVDGKVTS
                     GSGSVNQAPITGESVLQGKTTGSDVFAGTILELGALDIQMTKAGKDTVFSRIIALVEE
                     AETHQAPIEKLTDRIAAWLIPVVFVFVGAVYLITHDVKLVIALLIFTSPAELGLATPL
                     VTIAAIARAAKEGILVKGGKYLEELAKVTTIVFDKTGTLTAGRPTVNQVEIINAEFTA
                     PQLVRLAAAADRRSSHPLARAILNYANALKLSYEEPAQFEVFQGRGVCAVVEGHRVWL
                     GNRAFMAEQGVSHSQEVTNTTDTAIFLAVDGALAGIFYVSDSIRMGAAAMVQELRKSG
                     VSEIVMLTGDNAETAGHVAQQTGITSYRANLLPEDKINVIREMQSSGIKVAMVGDGIN
                     DAPALVQANIGIAMGAMGTEAAMEAADIVLMEDRLEKIARARAISRRAFRTIKENIIV
                     GVGVVHVTGILLVLLKIIGPVEAAAIHLLPDTLVFLNSIKLLRIRIRD"
     gene            complement(3560..>4168)
                     /locus_tag="VLL95_16300"
     CDS             complement(3560..>4168)
                     /locus_tag="VLL95_16300"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HSR40472.1"
                     /translation="AGANGCILHYIENNVTQVSNQLVLMDVASEYHGYTADVTRTVPA
                     NGKFTAEQKAIYQLVLDAQDEVMKLCKEGTAFRALNEKATAVLAAGLMQLGIIKEPKE
                     VSQYYIHGVSHHMGLDVHDKYRSMVLKQDMVITVEPGIYIPKGSPCDPKWWDIAVRIE
                     DDVIIGKTGCENMSAAAPRTPDEVEKMAAKSSKLNELVLPKF"
BASE COUNT          996 a         1020 c         1149 g         1003 t
ORIGIN      
        1 tgcggccttt attgccggtg gcaggaataa ccgccggttt actggcgtgc acgattcctt
       61 gtatgtgaaa gtgatcgcga tttccgatgc aaagaatcac attgtcatgg tgagtttcga
      121 ttgcattggc atgctgtatc caaccctggt ggcgatcagg aaagagatcg catcccaatt
      181 gccggcttca gctttcaacc ccgggcatat cgtaatgaac tcaacgcata cccacagcgg
      241 tccggatgta gtgggcattt ggggacccga ccaaatgacc tccggcgtgg acagcgccta
      301 catgagaagg gtagtgacaa ccacggtcaa tgccattgtg caagcgtgga aaaaccggca
      361 ggatgccacc atggtttatg ccgaaaccga attcgggcag gattgggtct acaatatttc
      421 cgattcatta aatctcgatc gcagtctttc ggtattgcag ttcctggata ggaatggaaa
      481 atcgattggc acactcacca atttcgcctg ccatcccacc attttggatg gtgccaattc
      541 actggtgtca tccgactacc cgggggcgat gtatcagcaa ctcgatcagc agcttggcgg
      601 caccaatatt ttcctgaatg gatcgattgg tggttgggtg caacccgagt acgaaccgaa
      661 aacctttgaa agcgtgaacc ggcggggagg tgaattggca gcggcggtgc tgaatgccct
      721 gaaacaaccg aaaacaatgt ctcattcggt catcggatac aaaagcatgg tcttccgttt
      781 gccggtgtcc aatcccgggt ttcgccaact ggcggcagcc ggtgtcatcg atcgtgccat
      841 gacggacagc gtggaaacgg agctggcatt tttctcgctg ggagatgccc aatttgtaac
      901 gcatcccggc gaaacatcgc ccacttacgc aaaggcctcc aaaaagaaaa tgaagaacaa
      961 tggccccagg tttgtgattg gcctgggcat ggatgcactg ggatatatcc ttacccctga
     1021 attctatgtg cccggtacca aaatgaagca tgcgggttac ctgacgggga tgtcggtaga
     1081 caggaatgca ggagaaatta tcatgcagaa gattgacctg cttacgcggc aatgaatgag
     1141 ggactggagc attgatcggc tgtgcaggac ttgccatcct gctcccccta tcgccgcggt
     1201 tcggaattcg gattactgaa cccttttcaa cgggttttcg acccggaaaa catgcacagc
     1261 cattgcagat tgccgatgcg ccgagagagc aaagccatta cactcgataa tgagcaggat
     1321 gaccggaaag ccaatttccg gcaggaaaaa atcgacgggc aaatcataca tttaataacc
     1381 agcaagggca acgggcagct gtgatgatgt acaggatcac ctggccctgt gcgtcatgga
     1441 ttcttgaaag gtaacgaact cgggtttgtg ccgtgtgatg ttttttccag gaggggcttt
     1501 attgcatata caggtcatga ataattcgcc agcatttttc tcccgtcagt tcttttggga
     1561 aattatccgc atcattacgg tgggcctggc gagcctgttg ttttatttac agtttgttcc
     1621 attgttcatt ctgctggcgg caatggcatt cggtctttac gccttggtaa aggccgctgc
     1681 atctgaactc atccgggaga aaaaaatcgg caccgaactt ttcatcacca ttgctgtggt
     1741 ggtgtctgtg ttgggcaagg aataccttgc cggggcagtg gtgctcatga tcatcctgat
     1801 tgccgaatac attgccagtg ccagtggcga aagagccaag gtggcgataa agggtttgat
     1861 cgggtcggtg cccaagaccg ccattgtaaa aagaaatggc acagaagaaa tagtacccat
     1921 tgccgacctg caagtgggtg atgtggtgct ggtaacggcc ggcgacaaaa ttccggtgga
     1981 tggaaaagtg accagtggca gcggttctgt aaaccaggca cccattaccg gagaaagtgt
     2041 gctgcagggg aagacaacag gcagcgatgt atttgctggc accatccttg aattgggggc
     2101 attggatatt cagatgacga aggccggaaa ggacacggta ttctcccgga tcattgcttt
     2161 ggtggaagag gctgaaaccc accaggcacc cattgaaaaa ctaacggaca ggatagcagc
     2221 ctggctgata ccggttgtct ttgtttttgt gggagcggtc tatttgatca cgcatgatgt
     2281 gaagctggtg attgcattgc tcatctttac ctctccggcc gaactggggc tggccactcc
     2341 attggtcacc attgccgcca ttgcccgtgc tgccaaagaa ggcatcctgg tgaaaggcgg
     2401 aaagtacctg gaggaactgg ccaaagtgac caccattgtt tttgacaaaa caggaaccct
     2461 gactgccggc cgcccaaccg tgaaccaggt ggaaatcatc aatgcggaat ttacagcgcc
     2521 acaactggtg cggctggccg cggctgccga tcggcgttcc agccatccac tggcaagggc
     2581 catcctgaat tatgccaatg cattgaaact ctcctacgaa gagccggcgc aatttgaagt
     2641 gttccagggc aggggagtgt gtgccgtggt ggaagggcat cgggtatggc tgggcaaccg
     2701 ggctttcatg gccgagcaag gcgtgtctca ttcgcaggaa gtgaccaata ccactgatac
     2761 tgctattttc ctggcagtag acggggcgct ggccggcatt ttttatgtat cggattcgat
     2821 aagaatgggg gcggctgcca tggtgcagga gcttcgcaaa agcggtgtga gcgaaattgt
     2881 aatgctgacg ggagacaatg ccgaaacggc agggcatgtg gcacaacaaa ccggtatcac
     2941 ctcctatcgg gccaacttat tgccggaaga caaaatcaac gtcatccggg aaatgcaaag
     3001 cagtggaatc aaagtggcca tggtgggcga tggcattaat gatgcgccgg cactggtgca
     3061 ggcaaacatt ggcatcgcca tgggcgccat gggtacggaa gctgccatgg aggcggcgga
     3121 cattgtactg atggaagaca ggcttgagaa aattgcaagg gccagggcca tcagcaggcg
     3181 ggcctttcgc accatcaaag aaaatatcat tgtaggggtg ggtgtggtgc atgtaaccgg
     3241 cattttgctt gtattgctta aaataatcgg gccggtggaa gcagccgcca tccatttgct
     3301 gccggacaca ctggtcttcc tcaattccat caaattgctg cgcatcagga tacgcgacta
     3361 gtttagtaac gcatcggtta atcgtatgaa gatgcctggg cttttactca aggcatgcta
     3421 tggcagtaat gccttgcctt aaatcgccct gatggcaacc ggggtggttt tacatcttct
     3481 gatgcaggtc gccagcctgc tcagtcaact gcgcatggca agtgccacat ttttaaagga
     3541 ttccttggcc ggaagaccgt caaaacttcg gcaaaaccaa ctcattcagt ttgctgcttt
     3601 tggcggccat tttctctacc tcatccggtg tgcggggtgc tgcagccgac atgttttcgc
     3661 aacccgtttt tccaatgatc acatcgtctt ctatgcgtac cgcaatgtcc caccatttcg
     3721 gatcgcaggg gctgcctttg ggaatataaa tacccggctc cactgtgatc accatatcct
     3781 gtttcaacac catgctcctg tatttatcat gcacatcaag ccccatgtga tgcgacacgc
     3841 catggatata atactgcgat acttctttgg gttctttgat gatgccgagt tgcattaaac
     3901 ccgctgcaag caccgcggtg gctttttcat tcaaggccct gaaggcagta ccctctttgc
     3961 agagtttcat cacctcatcc tgcgcatcga gtaccagttg gtagatggct ttttgctcgg
     4021 ctgtaaactt gccgttggct ggcacggtgc gggtaacgtc ggctgtatag ccatggtatt
     4081 ctgatgccac atccatcagc accagctggt tgcttacctg tgttacgttg ttttcaatgt
     4141 agtgcaaaat gcatccgttg gcgcccgc
//
LOCUS       DATIQF010000945         3654 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_60685, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000945 DATIQF010000000
VERSION     DATIQF010000945.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3654
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60685"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1382
                     /locus_tag="VLL95_16305"
     CDS             <1..1382
                     /locus_tag="VLL95_16305"
                     /inference="COORDINATES: protein motif:HMM:NF044379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HSR40473.1"
                     /translation="ELFFNLDATEEQLNFPTYYGSGKNGWFNESLTPTDNIIPLMDGI
                     LKHVPEPKVAEGTVQMQITSLDYSSFLGRIAIGKVARGVLKENQPISLMQTDGSVKKQ
                     RIKDLYVFEGMGKRKVSEVMAGDLCAVVGVEGFNIGDTIADFENPEALPIISVDEPTM
                     SMLFGINNSPFFGKDGKFVTSRHLRDRLMKETEKNLALRVKDTDSADSFLVFGRGILH
                     LGVLVETMRREGYELTVGQPQVLVKEIDGHKCEPYETLVVDVPEEFASKVIDLVTRRK
                     GELHVMETKGEMQHLEFEIPSRGLIGLRTNMLTATAGEAVMAHRFLDYKPWKGPIPGR
                     NNGVLLAKEGGTTTAYSLDKLQDRGFFFVDPGEDVYAGMIIGENNKPGDLVVNPNEGK
                     KLTNHRASGSDAATSIAPKTLLTLEECMEYIQPDECIEVTPNFIRMRKVLLDENDRAR
                     MAKQMKAEA"
     gene            1543..>3654
                     /locus_tag="VLL95_16310"
     CDS             1543..>3654
                     /locus_tag="VLL95_16310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40474.1"
                     /translation="MKRWLSAFVFAALCPFSIAAQSRTYTPDEIDRIASLCKLWGMLH
                     YFHPNVLNGTVVTDSLVVPAARSLAADASAANYKRVVAAMLAATADAETKLSQASEQV
                     RLLTSPGKVNVMALPGGFQYIALPTNISSMEELAKTGFMDDSWRNANGTVLDLRKSDY
                     QVQDWSEEQFVADFMPTISSALLGKKRLPALQERYSAHNGFVSQTQTTPNVYSTGWLS
                     NNFASERKGDGKGYGKPFVFVLHEQSNAQLIWQCLALAQAGVCQVVIDGQAPFGAKGR
                     THSITLSDGLQCQLRVSDFFTGNGQQLPEPAAVMPVQDTTLNGKLVQQCLALLQQAPG
                     KVGASSNASLRMDYVYPRPGRYSQSFYPDAGLRLMGLFNWWNAIHYFFPYKHLTDVPW
                     DSVLYSHIPIMLQAKDSIEYMFAVRSMVSHINDSHGFLNNENPVTPVRSVLGYWPPVD
                     LRFKEGKLWLTDIGIDSAQDMSQVQLWDEILAIDDVPVKQAAEKWRRFIASSNESTYA
                     RDVVRYLINGPKDSKVKLLIRRQGVEKEVTLVRTGRSNLRSPKIDFNSRYPAIQKMQD
                     SVLYINMGHLTGAQAESLAKVLHKEKVLLFDIRNYPQGTAWTLAPRMTTTAKKAVAFD
                     KPFVTPGHLYGGESKENMASAFTVVPADSKKAFEGRVFILCNEQTQSQAEYTIMMFQG
                     ATQCTVVGSQTAGADGNVTQVA"
BASE COUNT          953 a          935 c          958 g          808 t
ORIGIN      
        1 tcgaactctt cttcaacctc gacgctaccg aagaacagct caacttccct acttactatg
       61 gcagtggcaa gaatggctgg ttcaacgaaa gccttacgcc caccgacaat attatcccgt
      121 tgatggatgg catcctgaag cacgtacccg agcctaaagt ggccgaaggc accgtgcaga
      181 tgcagatcac cagcctcgac tacagcagct tcctcggacg tattgccatt ggcaaagtag
      241 cccgtggtgt actgaaagaa aatcagccca tcagcctcat gcaaaccgat ggctctgtga
      301 aaaagcagcg cattaaggac ctgtatgtgt ttgaaggcat gggcaagcgc aaggtgagcg
      361 aagtaatggc gggcgatctc tgcgccgttg tgggtgtgga aggcttcaat attggtgaca
      421 cgatcgccga ttttgaaaac cccgaagccc tgcccatcat cagcgtggac gagcctacca
      481 tgagcatgct ttttggcatc aacaactcac ctttctttgg caaggacggc aagtttgtga
      541 ccagccgtca cctccgcgac cgcctgatga aggaaaccga aaagaacctg gccctgcggg
      601 taaaagacac cgatagcgcc gattcattcc tcgtgtttgg tcgtggtatt ctgcacctcg
      661 gcgtactggt ggaaaccatg cgtcgcgaag gctacgaact caccgttggt cagccacagg
      721 tgctggtaaa agaaatagac ggccacaagt gtgagcccta cgaaaccctg gtggtagatg
      781 tgccggaaga atttgcttcg aaagtaattg acctggttac ccgtcgcaaa ggcgaactgc
      841 atgtgatgga aaccaagggc gaaatgcagc acctcgaatt tgaaataccc agccgcggcc
      901 tcattggctt gcgtaccaat atgctcaccg ccactgccgg cgaagcagta atggcgcacc
      961 gcttcctcga ttacaaaccc tggaaggggc ccatccccgg ccgaaacaac ggcgtactgc
     1021 tggcgaaaga gggaggcacc actactgcct actcgttgga taaactgcag gaccgcgggt
     1081 tcttctttgt ggatccgggt gaagatgtat atgccggtat gatcattggc gaaaacaaca
     1141 aacccggcga cctggtggtg aaccctaatg aaggaaaaaa actcaccaac caccgtgcaa
     1201 gcggcagcga tgcggctacg agcattgccc ccaaaacctt gcttacgctg gaagaatgca
     1261 tggaatacat tcagcccgat gagtgcattg aggtaacgcc caatttcatt cggatgcgca
     1321 aggtgttgct cgatgaaaac gatcgtgccc gcatggcgaa gcagatgaag gcagaagcct
     1381 gatgaagtga atgagtcaat agttgattga gtaaataggg aaatcccggc agcgaaagtt
     1441 gccgggattt tttttgaata ggcctcgtga attttcatcc tacctgtgat tatttttttc
     1501 aggacaggat attatctttc accaacacca aatcctacgc ctatgaaacg ctggctgtca
     1561 gcctttgtat ttgccgcact ctgccctttt tctattgcag cccaaagccg aacctacacc
     1621 cccgatgaaa tagatcgcat agcatcgctg tgcaaactgt ggggcatgct ccattatttt
     1681 catcccaatg tgctcaatgg caccgtggta acggatagcc tggttgtgcc tgcagcccgc
     1741 agcctggccg ctgatgccag cgccgccaac tacaagcggg tggtagctgc catgctggct
     1801 gccacagccg acgctgaaac caaactatcg caagcttcag aacaggttcg cctgctgacc
     1861 agcccgggca aagtaaatgt gatggcactg cccggcggct ttcaatacat cgcacttccc
     1921 acgaatattt cgagtatgga agagctggct aaaactggct ttatggatga cagctggcga
     1981 aatgccaatg gaaccgttct cgatttgcgt aaatccgact accaggtaca ggattggagt
     2041 gaggagcaat ttgtagcaga ttttatgccc acgataagca gtgccttgtt gggcaaaaag
     2101 aggttgcctg ctttgcagga aagatattcc gcccacaatg gatttgtttc acaaacacaa
     2161 accaccccca acgtgtatag caccggctgg ctcagcaaca attttgccag cgagaggaaa
     2221 ggggacggca aagggtatgg caaaccattt gtatttgtgc tgcatgagca aagcaatgcg
     2281 cagcttatct ggcaatgcct ggcattggca caagccggtg tatgccaggt ggtaatagac
     2341 gggcaggcac cctttggtgc caaaggcaga acacacagca ttacgctgag cgatggtttg
     2401 caatgccagc tcagggtgag cgattttttt accgggaatg gccagcaact ccctgagcct
     2461 gcagctgtga tgcctgtgca ggacaccaca ttaaatggca aactggtaca acaatgcctg
     2521 gcactgcttc agcaggcccc gggcaaggtg ggcgcctcgt ccaacgcatc gctgcgcatg
     2581 gattacgtgt atccgcgccc cggccgctac agtcaaagct tttaccccga tgccggattg
     2641 cggctcatgg ggctttttaa ttggtggaat gccattcact atttcttccc gtacaaacac
     2701 cttaccgatg tgccatggga ttcggtgttg tacagccaca ttccaatcat gctgcaggcg
     2761 aaggattcca tcgagtacat gttcgcagtg cgcagcatgg tcagccatat caacgacagc
     2821 catggcttct tgaacaatga aaaccccgtg acaccggtta gaagtgtttt gggttattgg
     2881 ccaccagttg atttgcgatt taaagaagga aagctgtggt tgaccgacat cggcattgat
     2941 tcagcgcaag acatgagcca ggtgcaactt tgggatgaga tactggcgat tgatgatgtg
     3001 ccggtgaagc aagcggcaga aaaatggcgc cgctttattg ccagcagtaa tgaaagcacc
     3061 tatgccaggg atgtggtgcg ctacctgatc aatggaccaa aagattctaa agtaaagttg
     3121 ctcatacgca ggcagggagt tgaaaaggaa gtgacactgg tgcggacagg acgctccaac
     3181 ctccgttctc ccaaaattga tttcaattcc aggtaccccg ccattcagaa aatgcaggac
     3241 agtgttttgt acatcaatat gggccatctt acaggtgccc aggccgaaag tcttgccaaa
     3301 gttttgcata aggagaaagt gttgcttttt gatatccgga actatccaca gggcactgca
     3361 tggacccttg caccacggat gaccactacc gccaaaaagg cggttgcatt tgataagcca
     3421 tttgtaacac caggccattt gtatggtggc gaaagcaaag agaatatggc ctccgccttt
     3481 acagtagttc ctgccgactc aaagaaggct tttgagggcc gcgtattcat tttgtgcaac
     3541 gagcaaaccc aaagccaggc agagtatacc atcatgatgt tccagggggc tactcaatgc
     3601 acggttgtag gcagccaaac tgcaggcgcc gatggcaatg taacgcaggt agcc
//
LOCUS       DATIQF010000946         2177 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_182344,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000946 DATIQF010000000
VERSION     DATIQF010000946.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182344"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..192)
                     /locus_tag="VLL95_16315"
     CDS             complement(<1..192)
                     /locus_tag="VLL95_16315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40475.1"
                     /translation="MTAEQQRLKVNATARVPLEQWGPYVSDLQWGTVREDYSENGDAW
                     NYLSFRQSHSRSYLWGEDGI"
     gene            303..686
                     /locus_tag="VLL95_16320"
     CDS             303..686
                     /locus_tag="VLL95_16320"
                     /inference="COORDINATES: protein motif:HMM:NF020950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease inhibitor I42 family protein"
                     /protein_id="HSR40476.1"
                     /translation="MVKKTAFLFILLFFSLFTGVSAQKTVAAIVKFTGNDTSVSVSRN
                     DNFVVELSVPNRKNYQWAISRPAANCKFTKSQIGEAATMPGAPELQLWFFKATQRGTD
                     SIVFVYKSPYDNAAAVERKLKVIVE"
     gene            744..1442
                     /locus_tag="VLL95_16325"
     CDS             744..1442
                     /locus_tag="VLL95_16325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40477.1"
                     /translation="MKHFLKHSPTVVLLPAIIGLLLGSCKKETGGSGNASTFLPGNAN
                     STWSYESKNFVNSTTGAFVMTKTSKDTVINGRTYKVYTISGGGNAYYLQSGSDYYQFS
                     TFAGTTSKVELLYLKSNAASGATWDQDITIAIAGVGSVTAKLTSRVEAKGISYSVGGN
                     AYSDVTQIKSTIGPLTIPGVPVPITLVSDITSYYANNVGRIYTRSKVNITIPTVPAIN
                     IDEETTLKSHNIVQ"
     gene            complement(1524..>2177)
                     /locus_tag="VLL95_16330"
     CDS             complement(1524..>2177)
                     /locus_tag="VLL95_16330"
                     /inference="COORDINATES: protein motif:HMM:NF024981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter"
                     /protein_id="HSR40478.1"
                     /translation="LAALPSTVSSSVVMVSIARGNVAGAIFNASISGLIGIAITPLWM
                     GLFVPATNTGYDLGSIYLKLLLEILLPVVLGISLQRYGGKWAQHYSKQLTLFDKSVIL
                     LIIYKSFAESFDANIYSSVKPIYFAVIALLVVVLFFLVYFLTGFIARQLHFSIEDQVA
                     AQFCGSKKSLVHGTVFSKILFAQSSSIGIMLLPLMLFHAFQIFMVSIYAGRLARRVT"
BASE COUNT          626 a          541 c          503 g          507 t
ORIGIN      
        1 gatgccgtct tcgccccaca aataagaacg ggaatgcgat tggcggaatg acaggtaatt
       61 ccaggcatca ccgttttcgc tgtagtcttc gcgtacggtg ccccattgga ggtcgctcac
      121 ataaggaccc cattgctcca gcggtacacg ggccgtagca tttactttca ggcgttgttg
      181 ttcagcagtc atatccttcc cggttcaatc ggcagttagt attttccatc cgggcaggca
      241 atcgttaaag ggctgaaatt aagggtaagg agttacattt ggctaccagt aaattcttcc
      301 acatggtcaa aaagactgca tttttattca ttctgttgtt tttcagcctg ttcactggag
      361 tctctgcaca aaaaaccgta gctgccattg tcaaattcac cggcaacgat acaagtgttt
      421 cggtaagcag gaatgacaac tttgtggtgg agctttccgt gcccaaccgg aaaaactatc
      481 aatgggccat cagccggccg gccgccaatt gcaaattcac caaatcgcag ataggcgaag
      541 ctgctaccat gcccggcgcc cctgaactcc agctttggtt tttcaaagcc acccaacgcg
      601 gtacagatag catagtattt gtatacaaga gcccgtacga caatgctgcc gcagtggaaa
      661 gaaaattgaa agtaattgtt gaataaccct cccacccttg gaaagaatga atttccgctt
      721 tctaaccaac taaatacact atcatgaaac atttcctcaa acactcacca acagttgttc
      781 tgctgcctgc tattatcggg ttgctgctgg gttcgtgcaa aaaagaaacc ggaggctcag
      841 gcaacgcttc cacctttttg cccggcaatg ccaattccac atggtcctat gagtcgaaga
      901 attttgtgaa cagcactacc ggtgcattcg taatgacgaa aaccagcaag gacactgtca
      961 ttaacggaag gacttacaaa gtgtatacga taagcggcgg tggcaatgct tattacctgc
     1021 agtccggcag cgattactat caattctcca cgtttgccgg caccacttcc aaagtagaac
     1081 tgctctatct caaaagcaat gcagccagcg gggccacctg ggaccaggac attaccattg
     1141 ccattgccgg ggtaggatca gtaactgcaa aactgaccag cagggtggaa gccaaaggca
     1201 tcagttattc ggtaggtggc aatgcctaca gcgatgtgac gcaaatcaaa agcaccattg
     1261 gtccgcttac tattccgggt gtgccagtac ccatcacgct tgtatcggac ataacatctt
     1321 actatgccaa taacgtggga aggatttata caagatccaa ggtcaatatc acgattccta
     1381 ctgttcccgc catcaatatt gatgaagaaa ccaccctcaa gagtcacaat attgttcagt
     1441 aaataggagc tgacttagca ctgaaaaaaa tcccggggca atgggttccg ggattttttt
     1501 atgccctgcc ataacggtat cagttatgtc acacgcctcg ccaacctgcc agcgtaaatg
     1561 ctgaccatga agatctggaa ggcgtgaaac agcatgagtg gcagcaacat tatgccgatg
     1621 cttgaagact gggcaaaaag gatttttgag aaaacggtgc cgtgcaccaa cgatttcttg
     1681 ctcccgcaaa actgtgcagc aacctggtcc tcgatggaaa aatgcaattg gcgggcaata
     1741 aaaccagtga gaaagtagac caggaaaaac agcaccacta ccagcagggc gatcactgca
     1801 aaatagatgg gcttcacact gctgtaaata ttggcgtcga atgactcggc aaaactcttg
     1861 tagatgatga gcaggatcac cgatttgtcg aacaaggtca gttgtttgct gtaatgttgt
     1921 gcccatttgc ccccataccg ctgaagtgaa attccaagta caacaggcaa caaaatttcc
     1981 agcaataatt tgaggtaaat actgccgaga tcatacccgg tattggtggc cggtacaaac
     2041 aatcccatcc acaaaggggt aatggcaatg ccgataagcc ccgaaatgct ggcattgaaa
     2101 atggcgccgg ccacattgcc ccgtgctatc gaaaccatga ccacagagga agaaaccgtt
     2161 gagggcaatg ctgccag
//
LOCUS       DATIQF010000947         2071 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_45229, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000947 DATIQF010000000
VERSION     DATIQF010000947.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2071
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45229"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1339
                     /locus_tag="VLL95_16335"
     CDS             <1..1339
                     /locus_tag="VLL95_16335"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="vanadium-dependent haloperoxidase"
                     /protein_id="HSR40479.1"
                     /translation="KTNGTTMKSISSLMARLLGMLVLLSMIACRAPEKKTLFEKEEVQ
                     HYCVQQLTNVIVYDIFSPPVASRIYAYSNLAFYEALKAGYPDAPSITAQCKGFGAMPS
                     ANTNTAYDYRLSAATAFLKVSEALVFSKDSVRNAIKAMQGQFDDLESDVFERSVQYGE
                     AVAQVVVERSKNDNYKITRGMPRYSVFAEAGKWQQTPPDYADATEPYWKLIQPLRMDS
                     AAQCRPPAPPAFDSSKSSQYYKELMEVYNTRKTLTAEQDSIAIYWDDNPFVTQHKGHL
                     TFANKKTTPVGHWMGITSILCKQNAKGNALLTAKAFALTSAAIFDGFISCWEEKYRSR
                     TVRPVTVIREWIDPLWDPLLQTPPFPEYTSGHSVISGAAAAVLDKIFGAVPFLDTTEV
                     PYLGMQRSFASPKAAAAEASISRLYGGIHYRAALEEGILQGERVGALFTQLLP"
     gene            1396..>2071
                     /locus_tag="VLL95_16340"
     CDS             1396..>2071
                     /locus_tag="VLL95_16340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40480.1"
                     /translation="MRKKLLIALLTVVVLLGVLWVLPSPVVFSETVLIDRPYQPFERN
                     VVNLDAWEKWWPGKRVSDSVFEYNGQQLHIDLVLLNGFHASNVGDNRRRYVFQFTPQP
                     GSKTSITFATVDYVDANPFSKATGYLRYFSRHGEISPWVDSVKGFFANTKKLYGMDVT
                     RTRVTDPSLIALKQYFDHEPTVAEVYGLINELRAYITAKGGKERNRPMVNMYKETENM
                     YMTMVAI"
BASE COUNT          536 a          503 c          546 g          486 t
ORIGIN      
        1 aaaaacgaat ggaacaacca tgaagagtat atcctcgctg atggcccggc ttttaggcat
       61 gctggtactg ctcagcatga tcgcttgccg tgcccccgaa aagaaaacac tttttgaaaa
      121 agaggaagtg cagcattact gcgtacagca gctgacgaac gtaattgttt acgatatctt
      181 ttctccgccg gttgccagcc gtatttatgc ttacagcaat ctcgcatttt atgaagcgct
      241 gaaggcgggt tacccggatg ctccgtccat tacggcacag tgcaaaggat ttggcgcaat
      301 gccatcggcc aatactaata cagcgtatga ttacaggctg agcgccgcta ctgctttcct
      361 caaggtttca gaagcgttgg tgttttcaaa agacagtgtc cggaatgcga tcaaagccat
      421 gcagggacaa ttcgacgatt tggaatcgga tgtgttcgaa cgttctgttc aatacggtga
      481 ggcggtggca caagtggtgg tagagcgttc gaaaaacgac aactacaaga tcacccgggg
      541 catgccacgc tatagcgttt tcgcagaagc aggcaagtgg cagcaaaccc cacccgacta
      601 tgcggatgct accgaaccct actggaaatt gatccaaccg ttgcgcatgg attcggcagc
      661 gcaatgccgg ccaccggctc cgcctgcatt tgactcttcc aaaagcagcc agtactacaa
      721 ggagctgatg gaagtgtaca atacccgtaa aacgctgact gccgaacagg acagcatcgc
      781 catctactgg gatgacaacc cgtttgtaac gcagcacaaa gggcatctca cttttgccaa
      841 taagaaaacg acgccagtgg gacactggat gggtatcacc agcattttgt gcaagcagaa
      901 tgccaaagga aatgccctgc tgactgcaaa agcttttgcg ttgacttccg ctgccatttt
      961 cgatggattc atttcctgct gggaagagaa gtaccggagt cgcacggtgc gcccggtgac
     1021 agtcattcgt gaatggattg atccactgtg ggatccattg ctgcaaacgc cgccttttcc
     1081 ggaatacacc agtggccaca gcgtgatctc aggggctgct gctgcggtgc tcgacaaaat
     1141 atttggtgcg gttccattcc tcgatactac ggaggttccc tacctgggca tgcagcgttc
     1201 ttttgcatcg cccaaggcag cggcggccga agccagcatc agccggttgt atggtggcat
     1261 acattaccgg gccgctttgg aagagggcat tctgcagggc gaaagggtgg gcgctttgtt
     1321 tactcaattg ctgccatgat atttatttgc attgaaaaga aattgaatca atagactgaa
     1381 attatctgtc acgttatgcg aaagaaattg ctgatagcct tgttgacggt ggtagtgttg
     1441 ttgggcgtat tgtgggtatt accctccccg gttgtattct ctgaaacagt gctgatcgac
     1501 cgtccgtacc agccgtttga aagaaacgtg gtcaatctgg atgcctggga aaaatggtgg
     1561 cccggcaagc gggtgtccga ctcggtattc gaatacaacg ggcagcagct gcacatcgac
     1621 ctggtgttgc tgaatggctt tcatgccagt aatgtaggcg acaaccgcag gcgatatgtg
     1681 ttccagttta cgccacaacc cggcagcaaa acatccatca cctttgccac ggttgattac
     1741 gtggatgcca atccattcag taaagcaaca ggttacctgc gttatttcag caggcatggc
     1801 gaaatcagcc cctgggttga ttcggtgaaa ggattctttg caaataccaa aaaactgtac
     1861 ggcatggacg tgacccgcac ccgggtaacg gatccttcac tgatcgcctt gaaacaatac
     1921 ttcgatcatg aacccactgt cgcggaagtg tatggactca tcaatgagtt aagagcttat
     1981 ataactgcga aaggaggcaa ggaaagaaat cggcccatgg tgaacatgta caaggagact
     2041 gagaacatgt acatgaccat ggtggccatt g
//
LOCUS       DATIQF010000948         1636 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_15111, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000948 DATIQF010000000
VERSION     DATIQF010000948.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15111"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..484
                     /locus_tag="VLL95_16345"
     CDS             <1..484
                     /locus_tag="VLL95_16345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40481.1"
                     /translation="LQEISFHKGGAATLFYRSMMQPKISPAEEKMIYACGDLLQWCND
                     IFDVYKDHHAGVQTLFTSASDLKPWKLQFVQKLESIKAQLRQLPMPAQGKKSFWHQYL
                     SVACRGLVCFDQLIALQDATGGVFNIAQYERQPTICDMEKWSNLRASIRYAASFARLE
                     "
     gene            549..>1636
                     /locus_tag="VLL95_16350"
     CDS             549..>1636
                     /locus_tag="VLL95_16350"
                     /inference="COORDINATES: protein motif:HMM:NF028500.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSR40482.1"
                     /translation="MYFSLLTNRPTILDSPIEYLKGVGPQKGDLLRKELNIHTFGDLL
                     EHFPHRHIDKTRVFPISAIAFGMDTVQVRGILMEPEEVGEKKGRRLAAILKDQTGELE
                     LIWFQGIQWVKKMLVPGRQYVVYGKVNWFKNKPSITHPEIEPADEENIAGKNFLEPVY
                     PTTEKLKTKFLTGRSIGKLTAALLPQVSPLDVPEFLPADILAEGKLMARYDAYRHIHF
                     PPDQATYDAALRRLKFEELFLLQIKLNQVKIKRHRMSRGLVFDKVGDHFNTFYAKYLP
                     FELTGAQKRVIKEIRADCGRGHQMNRLLQGDVGSGKTMVALLCMLLAADNGYQSCLMA
                     PTGILAQQHYNGLTALIKDLPVRMGLLTG"
BASE COUNT          398 a          432 c          429 g          377 t
ORIGIN      
        1 actacaggaa atttcatttc acaaaggcgg ggcagccacc ctgttttacc ggagcatgat
       61 gcagcccaaa atctctccgg cagaggaaaa gatgatctat gcctgcggcg atctgctgca
      121 gtggtgcaat gatatttttg atgtgtacaa agatcatcac gccggcgtgc aaaccctgtt
      181 taccagcgct tccgatctga agccttggaa actgcagttt gtacaaaagc tcgaaagcat
      241 caaggcgcaa ttgcgccagt tgccgatgcc tgcacagggt aaaaaatcct tttggcacca
      301 atacttgtcg gtggcctgcc gtggcctggt ttgcttcgat caattgatcg ccttgcagga
      361 tgccaccggc ggcgtattca acattgctca atacgaacgc cagcccacca tttgcgacat
      421 ggaaaagtgg agcaacctca gggcctccat ccggtatgcc gcttcctttg ccaggctgga
      481 atgacaaaag catttcgctt tcgcttatgc cttattgttg gtaaaatttg aaccgctttt
      541 cgcattcctt gtattttagc ctgttgacca atcgtcctac catactcgat tcgcccattg
      601 aatacctgaa aggggtgggg ccgcagaagg gtgacctgct gcgcaaggaa ctcaacatcc
      661 atacgtttgg cgatttgctg gagcattttc cgcaccgcca catcgacaag acacgtgtat
      721 ttcccatttc ggccattgcc tttggcatgg ataccgtgca ggtgcggggc atcctcatgg
      781 agccggagga agtgggcgaa aaaaaaggcc gccggctggc cgccatcctg aaagaccaga
      841 ccggtgaact ggaattgatc tggttccagg gcattcagtg ggtgaagaaa atgctggtgc
      901 cgggcaggca atatgtggta tacggcaaag tgaactggtt caagaacaag ccttccatta
      961 cccatcctga gattgagccc gccgatgaag aaaatatcgc cggaaagaac ttcctggagc
     1021 cggtatatcc caccaccgaa aaactcaaga ccaaattcct gaccggccga tccattggca
     1081 aacttaccgc tgcgttattg ccacaggtaa gccccctgga tgtgcccgaa tttttgcccg
     1141 ccgacatttt agccgaaggc aaattgatgg cgcggtacga tgcctaccgg cacatccatt
     1201 ttccgccgga ccaggctact tatgatgcgg ccttgcgtcg tctcaagttt gaagaactct
     1261 tcctgttgca gatcaagctg aaccaggtga agatcaaacg gcaccgcatg agccgtggtt
     1321 tggtgttcga taaagtgggc gaccatttca ataccttcta tgcaaagtat ttaccctttg
     1381 aactgaccgg tgcgcaaaaa agggtgatca aagaaatacg ggccgactgc ggccgtggtc
     1441 accagatgaa ccgcctgctg cagggcgatg tgggcagtgg caagaccatg gtagcgttgc
     1501 tttgcatgtt gctggccgcc gataatggtt accagagctg cctgatggcg cctaccggaa
     1561 tactggcaca gcagcattac aacgggctca ccgcacttat caaagatttg ccggtgcgca
     1621 tgggcctgct cacggg
//
LOCUS       DATIQF010000949         5968 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_60773, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000949 DATIQF010000000
VERSION     DATIQF010000949.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 5968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5968
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60773"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            97..603
                     /locus_tag="VLL95_16355"
     CDS             97..603
                     /locus_tag="VLL95_16355"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: protein motif:HMM:NF025793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0052717 - tRNA-specific adenosine-34
                     deaminase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HSR40483.1"
                     /translation="MSILTNRLVNYALVSPTMQLFDDEYFMRKALQEAEIAFEKDEIP
                     VGAVVVLNNKVIGRGHNLTETLKDVTAHAEMIALTAAFNHLGAKYLPDATLYVTLEPC
                     HMCAGALYWSKIGRIVYGANDEKHGYQHFYGNQNPFHPKTILEHGLLAEEGGSLMKKF
                     FEKKRTLK"
     gene            600..1790
                     /locus_tag="VLL95_16360"
     CDS             600..1790
                     /locus_tag="VLL95_16360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40484.1"
                     /translation="MIFRFTLLLGMLLCMAAAIGQNADFKVMINKERLQPGDTLDLIA
                     DYGISGRQLPPATFALTILGPNDKTWQLRWPMIDGHSEASIIFPDSAAAGAYNLLFAV
                     QPRFLKLFGEVIHPESPAQITALIVAGSELKQLPIKTSPNGKFVIDKLLLEGSAGITF
                     SHGYNIPGPPLVKLDAWLDSSFQPAATGVKQIVLNHAGQSTYTPGRLRKDSVFANGFD
                     LLYPQYLAKKKLGKYDHLQGLELYDSLYLQPPFDTAASKVIDCLSDTAALNKPSVYDL
                     LKTALPKMELLVWGDHNVVPRNAPPYMEKLETETMVKWNDKWYRLHFNGLFGEASSLI
                     FPVNAMAEIRIYEPPFFKVPQSNITFGVIAFFERKFPFQNPFPYSNRYRINGYSPDLV
                     KLPF"
     gene            1897..2505
                     /locus_tag="VLL95_16365"
     CDS             1897..2505
                     /locus_tag="VLL95_16365"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF014796.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HSR40485.1"
                     /translation="MAFTLDPLPYASNALEPYFDTMTMEIHHGKHHQAYVTNLNNAIA
                     GTEHENKSLAELVAHAGAISTPVRNNGGGHWNHTFFWNQLKVNNGATPTGKLAAAIEA
                     DLGGFDKFKEDFKKAGIGRFGSGWAWLGVKDGKLCICSTPNQDNPLMDVAECKCAPIL
                     GLDVWEHAYYLKYQNRRPDFIDAFWNVVNWDVVAERYEKALS"
     gene            2649..4610
                     /locus_tag="VLL95_16370"
     CDS             2649..4610
                     /locus_tag="VLL95_16370"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HSR40486.1"
                     /translation="MFRKILLPIACIAALALNHADAQTKRALLIGVANYPDPRWKPLS
                     SATDLNYMQEALQLQGFAKENMTLLADEQATKSGISQAFESLTKNIQAGDIVYIHFSG
                     HGQQIEDDKENQDEVDGYDEAIVPYDARGKYDPVKYQGQNHFRDDLMGQYLNGIRSAV
                     GANGSVLVVIDACHSGTATRSAEFATVRGDPTPFASPEYKPVLTTGLSRLSNVQEGFM
                     SDGPLKVSNMVVFSASSPNQVNYETKDATGTGVGSLTYALARALQRMEPNSNYGELFA
                     AVKAMIQSDYPQQLPMMEGDANQQVFSGNFLAKEDQQKIDRWLSDTSFIVSMGQLQGI
                     YAGTELNILNASNRSLLGTAIISESNPVSCVGNTSKPFDKAQPYLVTVKSYGTPPVLL
                     GMKVVANKGVNEKQKALIEEWVKTLPGVQLSDNADYMLALANVNGQCNMELVETGDAI
                     RWKGAEANGKKPSDETTKSITAALQQGARSRFLRSMPDGGPLAGQIELVIEAQAEKDA
                     SNEWKLNRGMPYKFTIINNSPVRVYYNLLNILPTNETSVLLPAPPESPQNYSIGPGQR
                     IVEDGIMVEVNAALGKEWLKIICSVRPIDLRPVFATEKKGTQTRGVGGVFEQWLNESL
                     EHTNTVRTRSAGPDAVTVVSAGFTVVEKK"
     gene            complement(4621..5448)
                     /gene="murI"
                     /locus_tag="VLL95_16375"
     CDS             complement(4621..5448)
                     /gene="murI"
                     /locus_tag="VLL95_16375"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HSR40487.1"
                     /translation="MQTTPIGIFDSGYGGLTVFRSIVQQLPQYDYLYLGDNARSPYGP
                     RSFETVYAYTLQCVEWFFAQGCPLVILACNTASAKALRSIQQKDLPNMTDPTRRVLGV
                     IRPTTEIIGKYTKSGKVGVLGTKGTVMSDSYPIEIGKFWPQLQVYQQACPMWVPLVEN
                     NEHLGDGANYFVQEYLDALYQQSANIDTLLLACTHYPLLQEKIKQFAKPGSTILGQGE
                     IVAESLVSYLRRHPEMEQRISKGAGRAFYTTDDTNDFDAHASVFYGEAVHSKHVALS"
     gene            complement(5500..5934)
                     /locus_tag="VLL95_16380"
     CDS             complement(5500..5934)
                     /locus_tag="VLL95_16380"
                     /inference="COORDINATES: protein motif:HMM:NF025473.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABA4-like family protein"
                     /protein_id="HSR40488.1"
                     /translation="MTLNDAFQMANGLALLAWVYLAIFPFRPATSKIIIGTVVTLLAA
                     VYATHVFGAIHADDFSKFSTLDGVQSLLNSPGATFVGWVHYLAFDLMVGLFIASNAAR
                     HGISYWYILPCFFFTFMLGPAGLLLYLLIRWAVTKQYFAENF"
BASE COUNT         1583 a         1524 c         1489 g         1372 t
ORIGIN      
        1 agtttcccgg ccaccttgta caccagcgta tcgggcccga aaggcagttc ttcggtaaca
       61 gcgggcagcg acaaacaata ttgacaaaat gattcaatgt ccatactaac caatcgtttg
      121 gtaaattacg cattagtttc gcccactatg cagttgttcg atgatgaata tttcatgcgc
      181 aaagccttgc aggaggctga gatcgccttt gaaaaggatg agatcccggt gggagccgtt
      241 gtggtgctca acaacaaggt cattggccgc ggccacaacc tgactgaaac attgaaggat
      301 gtgacagcgc atgccgaaat gattgctttg acagcagcct tcaaccacct cggcgccaaa
      361 tacctgcccg atgccacttt gtacgtaacg ctggaaccct gccatatgtg tgccggcgct
      421 ttgtactgga gcaaaattgg acggatcgtg tatggcgcaa atgatgagaa gcatggctac
      481 cagcatttct acgggaatca aaatcctttc catccgaaaa cgatactgga gcatggattg
      541 ctggccgagg aaggcggcag cctgatgaaa aaattcttcg aaaagaaaag aaccctcaaa
      601 tgatctttcg tttcacacta ttgctgggaa tgttgctttg catggcagcc gctattgggc
      661 aaaatgccga tttcaaagtg atgatcaaca aagaaaggct gcagcccggc gacacacttg
      721 accttattgc cgattatggc attagtggca ggcaattgcc gccggctact ttcgccctca
      781 ccattttagg tccgaatgac aagacctggc aactgcgttg gccaatgatc gatggccaca
      841 gcgaagccag cattattttt ccggacagcg ctgcggcggg cgcctacaac ctgttgtttg
      901 cagtgcagcc ccgcttcctc aaactttttg gagaagtcat ccatcccgag tcacctgctc
      961 aaataaccgc cctcattgtg gcaggctccg aattgaagca gctgcccatt aaaacaagcc
     1021 ccaatggcaa atttgtgatc gacaagcttt tgctcgaagg aagtgccggc attacttttt
     1081 ctcatggcta taacataccg ggacctccgc tggtcaaact ggatgcctgg ctcgattcaa
     1141 gttttcagcc agcggcaacc ggcgtgaagc aaattgtgct aaatcatgcc gggcaaagca
     1201 cttacacacc tggcaggttg cgcaaggatt ctgtgtttgc caatgggttt gaccttcttt
     1261 acccgcaata cctggcaaag aaaaaattgg gcaagtacga tcatttgcaa ggactggagt
     1321 tgtacgattc cttgtatttg cagccacctt ttgatactgc agccagcaag gtgatcgact
     1381 gtttgtcgga tacggccgca ctgaacaagc cttcggtgta cgacctgctc aaaacggccc
     1441 tccccaaaat ggaactcttg gtatggggcg atcataacgt ggtgccgcga aatgcgccgc
     1501 cttatatgga aaaactggaa actgaaacga tggtgaaatg gaacgacaaa tggtatcggc
     1561 ttcatttcaa tggattgttt ggggaagcat cctcccttat tttccctgtc aatgccatgg
     1621 ccgagatccg gatctacgag ccaccgtttt tcaaagtgcc gcaatcaaac ataaccttcg
     1681 gggtcattgc attttttgaa agaaaattcc cattccagaa tccctttcca tatagcaatc
     1741 gctaccggat caatggctac agtcccgacc ttgtgaaact ccccttttga ccaatccgca
     1801 aggatcattt cctgaaatcg caacgctgcc aacattcgtt gtgtaccttt gttacccttt
     1861 cagaaaaatc atttcaaaca actaaaagca atatttatgg catttacact cgatccgctg
     1921 ccttacgctt ctaatgcgct ggagccctac ttcgatacca tgaccatgga aattcaccat
     1981 ggcaaacacc accaggctta tgtaaccaat ctcaacaatg ccattgccgg cactgaacac
     2041 gaaaacaaga gccttgcaga actggtggcc catgcaggcg ctatcagcac cccggtacgc
     2101 aacaacggtg gtggtcactg gaatcatacc ttcttctgga accaactgaa ggtgaacaac
     2161 ggcgccacac ctactggcaa actcgcagct gccattgaag cagacctggg tggtttcgac
     2221 aaattcaaag aggatttcaa aaaagcaggc attggtcgct ttggcagtgg ctgggcttgg
     2281 ctgggcgtaa aagatggcaa gctgtgcatc tgctctacac ccaaccagga caacccgctg
     2341 atggatgtgg cggaatgcaa atgcgctccc atcctcggcc tcgatgtgtg ggaacatgcc
     2401 tactacctga agtaccagaa ccgtcgtccc gattttattg atgcgttctg gaacgtagtg
     2461 aactgggacg tagtagcaga acgttatgag aaagcactgt cttgatcagc acattttttt
     2521 cagaagccgg gcaatttttt tgtccggctt tttttatgcc cttaaatacc acactcaggg
     2581 tataggcaac gccgatgcac tctggtaatt ttcgtgtaca ttggaagaat ccttttaaac
     2641 ccccatccat gttcaggaag atcttgttgc ccattgcttg cattgctgct cttgccctca
     2701 accatgctga cgcccaaacc aaaagagcat tactcattgg cgtagccaat tatcctgatc
     2761 cacggtggaa gccgctgagt tcagccactg atttgaatta catgcaggaa gccttgcaac
     2821 tgcagggttt tgccaaagag aatatgactt tgctggctga tgagcaggcc accaaatcag
     2881 gcatctcaca ggcctttgaa agtctgacga agaacataca agccggtgat atcgtttata
     2941 tccatttttc cggtcacggc cagcagatag aagatgacaa ggaaaaccag gatgaggtgg
     3001 atggatatga tgaggccatt gtgccctacg atgcccgcgg caaatacgac ccggtgaagt
     3061 accaggggca aaaccatttt cgtgatgatt taatgggcca atacctcaat ggcatacgca
     3121 gcgccgtggg ggccaatggc agcgtactgg tagtgattga tgcctgccac agcggtaccg
     3181 ccacccgaag tgccgagttc gctacggttc gtggcgaccc tactcccttt gccagcccgg
     3241 aatacaagcc ggtgcttacc accggtcttt cccgcctcag caatgttcag gaaggcttca
     3301 tgagcgatgg gcccttgaaa gtttcgaaca tggtggtgtt cagcgccagc agccccaacc
     3361 aggtaaacta tgaaaccaaa gatgccaccg gtaccggtgt aggatcgctt acttatgcgc
     3421 tggcccgtgc cttgcagcgt atggagccca acagcaatta tggcgaactg ttcgcggctg
     3481 taaaggccat gatccaaagc gactatccac aacaattgcc catgatggaa ggcgatgcca
     3541 accagcaggt tttttcgggt aatttcctgg ccaaggaaga ccagcaaaaa attgaccgct
     3601 ggctgagcga caccagtttc atcgtaagca tgggtcaact gcagggtatt tatgccggaa
     3661 ctgaattaaa tattctgaat gcttccaacc gaagcctttt gggtactgcc atcatcagcg
     3721 agagcaaccc ggtgagttgc gtaggcaata ccagcaagcc cttcgataag gcccagccct
     3781 acctcgtaac ggttaaaagt tatggcactc ctcctgtatt gctgggtatg aaagtagtgg
     3841 ccaacaaagg cgtaaacgaa aagcaaaagg cactgataga agagtgggtg aaaacactgc
     3901 cgggggtaca attgtcggac aatgccgatt acatgctggc ccttgccaat gtcaacggtc
     3961 agtgcaatat ggagttggtg gaaaccggtg atgccattcg ctggaaaggc gccgaagcca
     4021 atggcaaaaa gccatcggat gaaaccacca aaagcattac ggccgctttg cagcaaggtg
     4081 cccgcagccg cttccttcgc agcatgcccg acggcggacc cctggcagga caaatagaat
     4141 tggtgattga agcacaagct gaaaaggatg cctccaacga atggaaacta aacaggggca
     4201 tgccttacaa gtttactatc atcaacaact caccggtgcg ggtatactac aacctgctga
     4261 acatactgcc caccaatgaa acttcggtat tgctacctgc ccctcccgaa tctccccaaa
     4321 actattctat tggaccaggg caacgtatcg tagaagacgg cattatggta gaggtcaatg
     4381 cagctttggg caaagagtgg ctgaagatca tttgctccgt tcgccccata gacctgcgcc
     4441 cggtatttgc cacggagaag aaaggcaccc aaacaagagg cgttggcggc gtgtttgagc
     4501 aatggctcaa tgaaagcctg gagcacacca acacagtgcg cacccgcagt gcaggccccg
     4561 acgcggttac cgtggtcagt gccggcttca ctgtggtgga aaagaagtaa cggataagaa
     4621 tcaggacaac gccacatgct tcgaatgcac ggcttcgccg taaaacacgg aagcgtgggc
     4681 atcaaaatca ttggtgtcgt cggtggtata aaacgccctg cctgcacctt ttgaaatgcg
     4741 ttgttccatt tcagggtgcc gccgcaaata actaacaaga ctttcagcca caatttctcc
     4801 ctggccgagg atggtactgc cgggttttgc aaactgcttt attttttcct gcagcaaggg
     4861 gtaatgggta caggccagca acagcgtgtc gatgttcgca gactgctggt acaaggcatc
     4921 caggtattct tgtacaaaat aattggcacc atcacccaag tgctcattgt tctccaccaa
     4981 tggaacccac ataggacagg cttgctggta tacttgcaac tggggccaaa acttaccaat
     5041 ctctattggg taggaatcgg acatgactgt gcccttggta cccagcacac ccaccttgcc
     5101 actcttcgtg tatttgccta tgatttcggt ggtaggtctg atcacaccca atacccgacg
     5161 ggtgggatct gtcatgtttg gcaggtcctt ttgctggatg ctgcgcagcg ctttggcgct
     5221 ggctgtgttg caggccagta tcaccagcgg acagccctgc gcaaaaaacc attccacgca
     5281 ttgcagggtg taagcataca ctgtttcgaa actgcggggt ccataagggc tgcgggcatt
     5341 atcacccagg tacaggtagt cgtattgggg cagttgttgc acaatagacc gaaagaccgt
     5401 aaggcctccg tatcctgagt cgaaaatgcc aataggagtt gtttgcatgc ttgccaatga
     5461 tcggtgcaaa gctattgtgg cgatgcttta caaaatgggc taaaaatttt ctgcgaaata
     5521 ctgcttcgtc accgcccacc tgatgagcag gtacaagagc aaacccgcag gtcccagcat
     5581 gaaggtgaaa aagaaacagg gcaaaatgta ccagtagcta atgccatgcc gggcggcatt
     5641 ggaagcgatg aacaaaccta ccatcaggtc gaaagccagg taatgcaccc agcctacaaa
     5701 agtggcaccc gggctgttga gtaaagattg cacaccatcg agagtgctga acttgctgaa
     5761 atcatcagca tggatagcgc caaatacatg cgtggcgtat accgctgcca gcagggtaac
     5821 aacggttccg attatgattt tgctggtggc agggcggaaa ggaaaaatgg cgaggtaaac
     5881 ccatgccagc aaggcaaggc cgttggccat ttggaaagca tcatttagtg tcatggctgc
     5941 attggttttg cagccatgaa cttacaga
//
LOCUS       DATIQF010000950         2957 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_106064,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000950 DATIQF010000000
VERSION     DATIQF010000950.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 2957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2957
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106064"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            55..1104
                     /locus_tag="VLL95_16385"
     CDS             55..1104
                     /locus_tag="VLL95_16385"
                     /inference="COORDINATES: protein motif:HMM:NF016274.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HSR40489.1"
                     /translation="MQQPTPRSLGYYFPAEFAPHEATWLSWPHKEASWPGKIQAIYPY
                     YSQFVKYLAQSEKVRINVANEAMKVFATGHLQQAGVDMSQVEFFFHPTNDAWCRDHGP
                     SFLLHKTEKKKAIVDWAYNAWGGKYPPYDLDDVIPTLIGQHYGYEVFHPGIIMEGGSV
                     EFNGAGTIMTSTACLLNPNRNPHLNQAQIEQYLLEYYGQDQVLWVDEGIVGDDTDGHI
                     DDTVRFVNEDTVITVIEENKSDENYALLQHNLKQLQQMRLLNGKQLNIIELPMPDDVI
                     WEEQRLPASYANYLLTNKYVIVPTFRSSKKDDRAMQIIQQAHPEREVVGIDSTEIIWG
                     LGSFHCLSQQEPAMH"
     gene            complement(1180..>2957)
                     /locus_tag="VLL95_16390"
     CDS             complement(1180..>2957)
                     /locus_tag="VLL95_16390"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="T9SS type A sorting domain-containing protein"
                     /protein_id="HSR40490.1"
                     /translation="GSTVNFNGNGAQTIPAYSYQNLTCSVSGAKTAAGSFSVGGTLNV
                     ASGVSLEMEGFDLSGASLTTSGGGNVVTKSTSATPLPSGRTWSMNVYYTFAGNQTVVS
                     GTYNGSFIAGGGGTKSAAGNLTLNGILSVGSTSTLDMGTSSILLGSPTSIVSPGIIKT
                     AVPTATSSTPFPAGLNWGSVGTVEYAGTAAQTAMAGTYHNLTVTGGGTKTLSGNISVG
                     GTLTFTSGKIDGGTNTLTLTSATPASQISGGSPSSYIYNTGAGRLRRNNLAIGTNNNF
                     PVGSPTYFNPVVVKPLDAVKDFAVSMFEGLNQDGTSTGTPLPNKNPVVNATWNVDLIN
                     GDPGNDGAEITLSWNTALEGAAFATFTGPQIGISHFTTGNWQLAVGSGDNTANTATAT
                     FDSFSPFAVGKVGTVLPISFTNLKAYEKQRGVQVDWKVTADKNVSTYVVERSADGRNF
                     SKIGTVAANQSDLASSYGFYDAAPLPGTGYYRIASQQKDGSNSLSAVLRVNLNKSIKE
                     TIIYPNPVKGGMLSLQSTNLEKGNYSIRMYSVNGQELLQLRFDHNGGAINQMINLPKN
                     LQPGMYDIMLDKAGSRVMSKKVMVQ"
BASE COUNT          744 a          758 c          725 g          730 t
ORIGIN      
        1 ctgtaaaata ttccatgcaa cgcagctttt gcttcctccc attacttttg ccgcatgcag
       61 cagcctaccc cccgttcatt aggatactat tttcctgccg agtttgctcc ccacgaagcc
      121 acctggctga gttggccgca caaagaagcc agctggcccg ggaagatcca agccatctac
      181 ccgtactaca gccaatttgt gaaatacctg gcgcagagcg aaaaggtgcg catcaacgtg
      241 gccaatgaag caatgaaagt ctttgccacc gggcatttgc agcaagccgg agtggacatg
      301 agccaggtgg aatttttctt ccaccctacc aacgatgcgt ggtgccgcga ccacggccct
      361 tccttcctgt tgcataaaac agaaaagaaa aaagcaatcg ttgattgggc gtacaacgca
      421 tggggcggca aatatcctcc ttacgaccta gacgatgtga tacctacatt gatcggccaa
      481 cattacggct acgaagtgtt tcatcccggc attatcatgg aaggcggctc ggtagaattc
      541 aacggtgccg gcaccatcat gacatccacc gcctgtttgc tgaaccccaa ccgcaacccg
      601 catctcaacc aggcgcagat agaacaatac ctgctggaat attacgggca ggaccaggtg
      661 ttgtgggtgg atgaaggcat agtgggtgat gataccgacg ggcacattga cgataccgtt
      721 cgattcgtaa atgaagacac cgtgatcact gtgattgagg aaaacaagag cgatgagaat
      781 tatgctttgc tgcaacacaa tttgaaacaa ctgcagcaga tgcgcctgct gaatggcaaa
      841 cagctcaaca tcattgaact gccgatgccg gatgatgtga tctgggaaga acagcgactg
      901 ccggcctctt acgccaatta ccttctcacc aacaaatacg tgatcgtacc cactttccgc
      961 agcagtaaaa aggacgaccg cgccatgcag atcattcaac aggcacatcc ggaaagagaa
     1021 gtggtgggca ttgactccac ggagatcatc tgggggcttg gcagtttcca ttgcctgagc
     1081 cagcaggaac ctgcaatgca ctgagcatgg caataccata aaatgagaaa gccgctgatt
     1141 caaacagcgg ctttcttcta tccatttttt gttggctgat tactgcacca tcactttctt
     1201 gctcatcacc ctgctgccgg ctttgtcaag cataatgtcg tacatgccgg gctgcaggtt
     1261 cttcggcaag ttgatcattt ggttgatggc ccctccattg tgatcgaaac gcagctgcag
     1321 cagttcctgg ccattaacgg aatacatacg tatgctgtaa ttcccctttt cgaggttggt
     1381 agattgcagc gaaagcatgc cgccctttac agggttggga tagatgatcg tttccttgat
     1441 ggacttattt agattcaccc gcagcacagc actcagtgaa ttgcttccat ctttctgctg
     1501 gctggcaata cggtaataac cggtgcccgg caaaggcgct gcatcataaa atccataaga
     1561 actggccagg tcagattggt tggcagccac tgtgccaatc tttgagaagt tgcggccatc
     1621 tgcagaacgt tccaccacat acgtgctcac gtttttatca gccgtaacct tccaatccac
     1681 ttgaacccca cgctgctttt cgtatgcctt caggttggtg aaagaaatgg gcaacacggt
     1741 gccgactttg cccacggcaa acggcgagaa tgaatcaaac gtggcggttg cggtgtttgc
     1801 tgtgttgtca ccacttccaa cggccagttg ccagttgcca gttgtaaaat ggctaatacc
     1861 aatttgaggt cctgtgaagg tggcaaaggc agcaccttcc aatgcagtat tccaggaaag
     1921 agtaatttca gcgccatcat ttccaggatc tccgtttatc aggtctacat tccatgtagc
     1981 attgacaaca gggttcttat tgggcagcgg cgttcctgtg gatgtgccat cctggttgag
     2041 gccttcgaac atactcaccg caaaatcttt gacggcatcc aggggcttta ctaccacagg
     2101 attgaaatag gtaggagaac ctacgggaaa attgttattg gtgccgattg ccaaattgtt
     2161 tctgcgcaaa cggccagccc ctgtgttgta gatgtaggac gatggacttc caccagatat
     2221 ttgtgatgca ggcgtggcac tggtaagtgt taaggtattg gtgccgccat caattttacc
     2281 tgatgtgaat gtgagtgttc ctccaacaga gatattgccg ctcaaagttt ttgttccacc
     2341 acccgtaaca gtaaggttat gataggtgcc cgccatggcc gtttgtgctg ctgtacctgc
     2401 gtattcaacg gtgccaacac ttccccaatt tagccctgca ggaaaaggtg tgctgcttgt
     2461 agcggttgga acagccgttt taatgatgcc tggactcact attgaagttg gggagcccag
     2521 cagaatgctg gaagtgccca tatccaatgt gctggtactt ccgactgaca aaataccgtt
     2581 caaagtcagg ttaccagcag cacttttggt accgccaccg ccagcaataa atgagccatt
     2641 atacgtgccg gagactacgg tttggttgcc agcaaatgta tagtagacat tcatgctcca
     2701 ggtccttccc gatggcagcg gagttgccga tgtactttta gtgactacgt ttccgccacc
     2761 acttgtggtg agtgaagctc cacttaaatc aaaaccttcc atctccaatg aaactccgga
     2821 tgctacattc aaagttccgc ccaccgaaaa agaaccggcg gctgttttcg cgccagatac
     2881 ggaacaagtc agattttgat agctataggc cgggatggtc tgtgcaccat tcccgttgaa
     2941 attgacagtg ctgccgg
//
LOCUS       DATIQF010000951         1542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_258425,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000951 DATIQF010000000
VERSION     DATIQF010000951.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258425"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..327
                     /locus_tag="VLL95_16395"
     CDS             <1..327
                     /locus_tag="VLL95_16395"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSR40491.1"
                     /translation="EKLPAVPTADVGNALVGKIAGAQISSVGGSPGQPVQILLRGINS
                     IRGGTAPMILLDGVQVVSTGLESLDLNSIERVEVFKVLPLPPFMAPRVPMVLSSFFQR
                     GASKAS"
     gene            354..>1542
                     /locus_tag="VLL95_16400"
     CDS             354..>1542
                     /locus_tag="VLL95_16400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40492.1"
                     /translation="MNELLNVGNVNKAQKHPWQTNANGEVIGVSSGQPMKFDPATASY
                     LDNPIGNLISPTSAFNKAYDKNLLWYDHYNMFFTKGTNINNVITITGAKDRFDFSLVG
                     SNNRQTTVFKNNGEFNRSNVTTNVGVELFKGLKLRSTTQLVFTRNTQLDPDGRNMFYA
                     INNARPFANFEAKDELGLYSPYLGDAVGVNHYNFNYIQENAKYKENTTDIVQSLNLNY
                     KFAKYVELDAKYGYNRSMLNRRYQIGEQSASVGAEYWQYWAEFYSPRTSFASPTTGTE
                     TGEINQREFLDVFQNFLTTATARFDLEKDFKVNFPLTSTTQVAWDYRNRETSDYWSWG
                     SDAPDFTPYNATNMANFKIATDEKTKFATYGYFVNQRFDYAGIAGVSAGFRSDYSSAF
                     GKGS"
BASE COUNT          423 a          385 c          367 g          367 t
ORIGIN      
        1 gaaaaactgc cagctgttcc tactgcggac gttggtaatg ctctggtagg taagatagct
       61 ggtgcccaaa tcagttcagt aggtggcagc cccggccaac ccgtgcagat cctgctgcgt
      121 ggtatcaact ctattcgtgg gggtactgct cccatgatcc tgttggatgg tgtacaggtg
      181 gtttcaaccg gcctcgaaag cctcgacctg aacagcattg agcgggtgga agtgttcaag
      241 gtcctgccgc tgccaccatt tatggcgccc agggtgccaa tggtgttatc cagctttttt
      301 caaagagggg caagcaaggc aagctgaaca tcgacctttc ttccagcata ggtgtgaatg
      361 aactgctgaa tgtgggcaac gtaaacaaag cccaaaagca cccctggcaa accaacgcca
      421 atggcgaggt aataggggtg agttctggcc agccaatgaa atttgacccg gcaaccgcct
      481 cctaccttga caacccaatt ggtaacctga tttctcccac ttcagccttt aacaaggcat
      541 atgataaaaa cctgctgtgg tatgatcatt acaatatgtt ctttaccaag ggtactaaca
      601 tcaataacgt aatcaccatt acaggcgcca aagatcgttt cgacttcagc ctggtgggtt
      661 caaacaaccg ccaaaccact gtattcaaga acaatggcga gttcaacagg agcaacgtaa
      721 ccaccaacgt aggtgttgaa ttgttcaagg gattgaaact gcgttctacc acccagttgg
      781 tatttaccag gaacacccag ttggatcctg acggccgcaa catgttttat gccatcaaca
      841 acgccaggcc ttttgccaat tttgaagcaa aggacgaatt gggcctgtat tctccctacc
      901 tgggtgatgc cgttggggta aaccactaca acttcaacta tatccaggag aatgcgaagt
      961 acaaggagaa tacaacagat attgtgcaaa gcctgaacct gaattacaag tttgctaagt
     1021 atgtagaact ggatgcgaaa tacggttaca acagaagcat gctcaaccgc aggtatcaaa
     1081 taggtgagca aagcgcttct gttggcgctg aatattggca gtattgggct gaattttatt
     1141 ctccccgtac cagctttgcc agcccaacta ctggaactga aacaggtgaa atcaaccaaa
     1201 gagagttcct ggatgtgttc cagaacttcc tgaccactgc caccgctcgc ttcgacctgg
     1261 aaaaggactt caaagtgaac ttccccctga ccagcactac gcaggtggca tgggattatc
     1321 gtaaccgcga aaccagcgat tattggagct ggggtagtga tgcccccgac tttacgccat
     1381 acaatgctac caatatggcc aacttcaaaa ttgctaccga tgaaaaaacc aagtttgcga
     1441 cgtatggtta ttttgtcaac cagcgatttg attatgccgg cattgcaggg gtaagcgccg
     1501 gtttccgttc cgactattcc tcagcattcg gcaagggttc ca
//
LOCUS       DATIQF010000952         3139 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_91087, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000952 DATIQF010000000
VERSION     DATIQF010000952.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3139
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91087"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..238)
                     /locus_tag="VLL95_16405"
     CDS             complement(<1..238)
                     /locus_tag="VLL95_16405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40493.1"
                     /translation="MRSEMMLTLIIFLLLFLKLGQASLRNETVMNMVNSLLVATLAIG
                     FFISDSGELFGNMFRTNDLLRLEKNMLTLGALIIS"
     gene            complement(397..1899)
                     /locus_tag="VLL95_16410"
     CDS             complement(397..1899)
                     /locus_tag="VLL95_16410"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HSR40494.1"
                     /translation="MNLNWLIILPLVTALAILPFKDLRQIRMIALSGSLAQLLLSFVL
                     LNLFLKEPEANLAGAMMFESSYAWYAPLHINLHTGIDGISLSMILLTAFVVVAGVLVS
                     WKMEKMSREFFFLLMLLSAGAYGYFISLDVFTMFFFLELAVVPKFLLIGIWGSGKKEY
                     SATKLVLMLMGASALVFVGLAGLYFNNPTGAQTFSMTALANNPASAEVQKFFFPFAFI
                     GFGVFTALFPFHTWVPDGHSSAPTAASMFLAGISMKLGGYGVLRVATTIMPEAAHYYS
                     PYIIVLSAIAILYGSFATMIQTDLKYINAYSSVSHTGFVLFGVGMLTKTAIAGAVIQM
                     VSHGLMTALFFAVIGMVYERTHTRQVEKMGGLLKTIPFISTVFVIAGLTSLGLPGFSG
                     FVAEMMVFIGSWENAGTLHRVATIAATASIVVTAVYILRAVGKVIMGPVTEKAYFDFK
                     DATWNEKAAAVLLIAGIVAIGMAPFLINNLITPGTEAIMQKLAQTQPPTP"
     gene            complement(1914..>3139)
                     /locus_tag="VLL95_16415"
     CDS             complement(1914..>3139)
                     /locus_tag="VLL95_16415"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HSR40495.1"
                     /translation="LTWALVLVFMGGAGKSAMFPLHIWLPDAMEGPTPVSALIHAATM
                     VVSGVYLVARLFPIFHLDEVAMSVVTWVGATSALFAAIIATTQTDIKRVLAYSTMSQI
                     GYMMFALGVSGYGGEAGLGFTASMFHLFTHAFFKSLLFLGAGAVIHMVHSNDMNDMGG
                     LRKYMPITHITFLIACLAIAGVPPLSGFFSKEEILLAAWEGNKAVYIIALLTAGLTAF
                     YMFRLYFMIFWQKEKEYHSHHGEGTASMKMPLIILTALTIISGFIPFAQFVSSDSKSF
                     ETHLHLMFSIAPIAMVIVGIGVAYVLYKKENSKPAQLATSLGSLYRSAYHKFYIDELY
                     LFITHNVIFRFIGKPAAWVDRNVVDGAVNGVANTTDDVSGAIKGWQSGKVQQYALWFF
                     GGVLILSILFIYLWQ"
BASE COUNT          856 a          765 c          813 g          705 t
ORIGIN      
        1 gtgaaatgat gagagcgccc agcgtgagca tgttcttttc caaacgcagg agatcattgg
       61 tgcgaaacat gttgccaaac aattcgccgc tgtcgctgat gaaaaaacca atcgccagcg
      121 tggctaccag caaactattc accatgttca tgacggtttc attgcgcagc gatgcctgtc
      181 ccagttttaa aaacaacagc aggaagatga tgagggtaag catcatctcg gagcgcatca
      241 gtatgagtat gtcttgtagc atatggaacc ccctaaatcc ccctaaaggg agacttttac
      301 cggtttatta attagttaat gatttctatt tcgagattgt attgcatttg gtctttgcta
      361 attcctaatt cccaagtccc aagtcctatt ccccctttag ggggtagggg gttgtgtttg
      421 tgccagtttt tgcatgatcg cttctgttcc gggtgtgatg aggttgttga tgaggaaagg
      481 tgccataccg atggccacaa tgccagcgat cagcagcacc gcagctgcct tttcattcca
      541 cgtggcatcc ttgaaatcga agtatgcttt ttccgttacg ggtcccatga tcacttttcc
      601 aacagcccgc agaatgtaca cggccgtgac cacgatggag gcggtggctg caatggtggc
      661 tacccggtgc agggtgccgg cattttccca actgccaata aacaccatca tttcggccac
      721 gaatccgctg aatcccggaa ggcccaatga agtgagacca gcaatgacga acaccgtaga
      781 gatgaatgga atggttttaa ggaggccccc cattttttct acctgccggg tatgggtgcg
      841 ttcatacacc atgccgatca cggcgaagaa gagggccgtc atcaaaccgt gcgataccat
      901 ctggatcacc gcacctgcaa tggccgtttt ggtaagcatg cccacaccga acaatacaaa
      961 gccggtgtgg cttacagatg aatatgcgtt gatgtattta aggtcggtct gaatcatggt
     1021 ggcaaacgat ccgtacaaaa tggcgatagc ggaaagcacg atgatgtaag gtgaataata
     1081 gtgcgctgct tctggcatga tggtggtggc tacccgcaac acgccgtatc ctccaagctt
     1141 catgctgatg cctgctagga acatgcttgc tgcagtgggg gcactcgagt gaccatcggg
     1201 cacccaggta tggaagggga acaaggcggt gaatacacca aaaccaatga atgcaaaggg
     1261 gaagaagaat ttttgaacct cggcagaggc aggattattg gccaatgcag tcatgctgaa
     1321 agtttgcgcc ccggttggat tattgaaata caaacctgcg aggccaacaa acaccaatgc
     1381 ggaggcgccc atgagcatca gcaccagttt ggtggcgctg tattcttttt tgccactgcc
     1441 ccaaatgcca atgagcagga acttgggcac cacggccagt tcgaggaaga agaacatggt
     1501 gaatacatcc agcgaaatga aataaccata agcgccggca ctcaataaca tgagcaggaa
     1561 gaaaaattcc cgactcattt tttccatctt ccaactcacc agcacacctg ctaccaccac
     1621 aaatgcagta agcagtatca tagacaagga aatgccatcg ataccggtgt gcaggttgat
     1681 gtgcaagggc gcataccagg catagctgct ttcaaacatc atggcgccgg ccaggttggc
     1741 ttccggctct ttcaaaaaca aattgagcag tacaaatgac aacagcaatt gcgccagcga
     1801 accagacaaa gcgatcatgc ggatctgccg caggtctttg aagggcagaa tagccagcgc
     1861 tgtaacgagg ggtaaaatga taagccagtt cagattcata tgcgttgact attttattgc
     1921 cagaggtaaa tgaataggat ggacaagatg agcacaccgc caaaaaacca caaagcatat
     1981 tgttgcactt tgccgctctg ccagcctttg atggcgcccg atacatcgtc ggtggtattg
     2041 gccacgccat tcacggcgcc gtccactaca ttacgatcca cccaggcggc gggcttgccg
     2101 atgaagcgga agatgacatt atgggtaatg aacaggtaga gttcatcgat gtaaaacttg
     2161 tggtaagcgc tgcggtacaa actgccaagt gaggtggcga gttgcgcagg cttgctgttt
     2221 tcttttttat acaatacata ggccactcca attcctacga tcaccatggc aataggcgct
     2281 atggaaaaca tcaggtgcaa atgcgtttcg aatgatttgc tgtcgctgct tacaaattgt
     2341 gcgaagggaa tgaagcctga aatgatggtc aatgccgtca gtatgatcaa tggcattttc
     2401 atgctggcag ttccctcgcc atgatggcta tggtattcct tttccttctg ccagaagatc
     2461 atgaagtaca aacggaacat gtagaatgcg gtgagcccgg cggtaagcag tgcaatgatg
     2521 tacacggctt tgttgccttc ccatgccgcc agtaaaattt cttctttgct gaagaagcct
     2581 gacaatggcg gtacgccagc aatggccagg catgcaataa ggaatgtgat gtgggtaata
     2641 ggcatgtatt tgcgcaggcc acccatatcg ttcatgtcgt tgctgtgcac catgtgaata
     2701 acagcaccgg caccaaggaa caacagggac ttgaagaagg catgcgtaaa caaatggaac
     2761 atggaagcgg taaagcccaa tcctgcttcg ccaccatagc ccgatacgcc cagggcaaac
     2821 atcatgtaac caatctgcga catggtacta taggcgagca ctcgcttgat atcggtttgc
     2881 gtggtggcaa tgatggcagc aaacaaggct gaagttgctc ccacccaggt cactacactc
     2941 atggccactt catcgaggtg gaagatgggg aagaggcggg caacaaggta aacaccagac
     3001 accaccatgg tagcagcgtg gatcaatgca gacacaggcg taggaccttc catggcatcg
     3061 ggcagccaga tgtggagcgg gaacatggcc gacttaccgg caccacccat gaacaccagc
     3121 accagcgccc aggtaagcg
//
LOCUS       DATIQF010000953         3717 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_45459, whole
            genome shotgun sequence.
ACCESSION   DATIQF010000953 DATIQF010000000
VERSION     DATIQF010000953.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 3717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3717
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45459"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1243)
                     /locus_tag="VLL95_16420"
     CDS             complement(<1..1243)
                     /locus_tag="VLL95_16420"
                     /inference="COORDINATES: protein motif:HMM:NF012700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40496.1"
                     /translation="MRLYPESALVQLEFDKVQQLLLQHVKTEYAHQKVETMRIHTHIQ
                     YIELELRQTHEFMLLLQTGDYFPGDFHKNLHKDIKLLGIPGAVLAGEQWILIRKMLET
                     INGIFRWFDNERRIGFLALTQVIANSYYEKVIREMIDQVVDEVGVVRDDASEELQRIR
                     MSLFRKRNELRRVFDKIIQKMNKQGYLSDIEESFMNGRRVLAVFAENKRMVKGVLHGE
                     SDSRQTAFIEPEETTALNNEIFSLENEEHKEVYRILRQLTQDLQPYASLLQTYLEIIG
                     EFDFIKAKAKLAIDMNASLPNVVNKAHIELNRAYHPLLYLYNKNSDKPTIPLDIKLDD
                     KSRILVISGPNAGGKTVTMKTIGLCQLMLQAGLLVPVRADSVMGIFKQLFIHIGDTQS
                     IEFELSTYSSHLQHMKYFLELA"
     gene            1495..1941
                     /locus_tag="VLL95_16425"
     CDS             1495..1941
                     /locus_tag="VLL95_16425"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSR40497.1"
                     /translation="MARTSIYLNFPHQTEEAFQFYKSVFGGDFTAPGFRRFSDIPPME
                     GQPPMPASLASKIMHVELPITGGLLLMGTDAPEEMGFTVSFGNNMHINLEPDSQEEAD
                     RLFNALSVGGTVTMPMQDQFWGAYFGSCTDKYGVHWMVNFQRHPMH"
     gene            1986..2543
                     /locus_tag="VLL95_16430"
     CDS             1986..2543
                     /locus_tag="VLL95_16430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40498.1"
                     /translation="MKKICLLVLICFGLSGFAFSQDTATSKSKWQGGLELDVLPYLTG
                     GYFGAGWVGKKNVRLRVLTAFVKKPDWSTPDGFTNHHITAYAAVVDFFLKPHWKGFWI
                     GGGPVYWQSSIQTDQQKQTAESNNWLLNGSAGYNFSLGKHFYLSPWAGLSLRVAGDTK
                     VPVDNTTYTLPQWNPEASLKVGFIF"
     gene            complement(2590..2805)
                     /locus_tag="VLL95_16435"
     CDS             complement(2590..2805)
                     /locus_tag="VLL95_16435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40499.1"
                     /translation="MKSLAISYGNISWQGPWLTASNTLAIQSEEGMILLGFSQKDGQF
                     FQNKASFPGIKVFDTKGKLVWEQKMNK"
     gene            complement(2973..3674)
                     /locus_tag="VLL95_16440"
     CDS             complement(2973..3674)
                     /locus_tag="VLL95_16440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR40500.1"
                     /translation="MANSIRNYRAEWMLSANLLLVVVATILYGAVLADAGYNIRQWQW
                     VNLLYLLPIVPMIFMQSWATLPRANDLVKTQGWWWKTAGIGMIFGVLDVLVIKVMLHP
                     EPYDSLPPFLQPFPYSLFLYTAGALDVELYYRILPLTLLLLADKFLFKSKYRTVFLWV
                     VGIVTSLIEPIMQFPGGAWWFMLYATLTGIAMNAWQFWCYAKHGLLASLAVRLGHYLV
                     WHILLGLYVQYIELA"
BASE COUNT          910 a          987 c          884 g          936 t
ORIGIN      
        1 tggccagctc caggaaatac ttcatgtgct gcaagtggct gctgtaggtg ctgagttcaa
       61 actcaatgct ttgcgtatca ccaatatgga tgaacagttg tttgaaaatg cccatcacgc
      121 tatccgccct caccggcacc agcaatcctg cctgcagcat aagctggcaa agaccgatgg
      181 ttttcatggt caccgttttg ccaccggcat tcggcccgct gatcaccagt attcggctct
      241 tgtcatccag cttaatatcc aggggaatgg tgggcttatc gctgtttttg ttgtacaggt
      301 acagcaacgg gtgatacgcc ctgttcaatt caatgtgtgc tttgttcacc acattcggca
      361 ggctggcatt catgtcgatg gccagcttcg ctttggcctt gatgaagtcg aattcaccaa
      421 tgatctccaa atacgtttgc agcaggctgg catacggctg caggtcctgc gtcagctgtc
      481 gcagaatgcg gtacacttct ttgtgctcct cgttttccag cgagaagatc tcgttgttga
      541 gcgccgtggt ttcttcgggt tcaataaatg cggtttggcg actgtcactt tcaccgtgca
      601 gcaccccctt caccatgcgt ttgttttcgg caaacaccgc cagcactctc ctgccgttca
      661 tgaagctttc ttcaatatcg gagaggtagc cctgcttgtt cattttctgg atgatcttgt
      721 cgaacaccct gcgcaattca tttcgcttgc gaaacaaact catgcgaata cgctgcaact
      781 cttcgctggc atcatcacgc accactccta cctcatccac tacctggtca atcatttcac
      841 gaatgacttt ttcatagtag ctgttcgcaa ttacctgcgt aagcgccagg aacccgatcc
      901 ttctttcgtt atcaaaccaa cggaaaatgc cattgatcgt ctccagcatt ttgcggatca
      961 ggatccactg ttcaccggcc agcacggcac cgggtatacc cagcagcttg atatccttgt
     1021 gcaggttctt gtgaaagtcg ccgggaaaat agtcgcccgt ttgcagcagc agcatgaact
     1081 catgcgtttg tcgcaattcc aattcaatgt attggatatg cgtgtgaatg cgcatggttt
     1141 ccaccttttg atgggcatac tccgtcttca catgctgcaa cagcaactgc tgcaccttgt
     1201 caaattctaa ctgcaccagg gcactctcag gatataatcg catggctttg tcttctgccg
     1261 gttttgctgc gcaaaagtgc gtaaaagcgg ggagatattt tttgggatac cagcaaccgt
     1321 gcaaaaccgg gcatcgttgt ctgcctgccg gtcaggcagg cgtcgcacac ttcagggcca
     1381 gtgcagcact ccgcccgaca agcaccggct ccgcctgtca caaaaggaac gctgaagttg
     1441 caggccggca aggactgcct tattttccgg ccaataacca atcaaccaac cgacatggca
     1501 cgtaccagca tttacctcaa cttcccccat caaaccgaag aagcctttca gttttacaaa
     1561 tcggttttcg gcggtgattt taccgccccg ggttttcgtc gcttcagcga tattccgccc
     1621 atggaaggac aaccgcccat gcccgcttca ttggccagca agatcatgca tgtagaactg
     1681 cccattaccg gcggcctgct gctgatgggt actgatgccc cggaagaaat gggattcaca
     1741 gtgagttttg gaaacaacat gcatattaac ctggagcccg acagccagga agaagccgac
     1801 aggctgttca atgcattgtc agtgggcggt actgttacca tgcccatgca ggatcaattc
     1861 tggggcgcct attttggcag ttgtaccgat aagtatggtg tgcactggat ggtaaacttt
     1921 cagcgccacc ccatgcattg atatttctca gcatttcaac atttcactgc cggtattttc
     1981 acgccatgaa gaaaatctgc ctgcttgtac tgatatgctt tggcctttcg ggcttcgcct
     2041 tttcgcaaga cactgccacc tcaaaatcga aatggcaggg tggcctcgaa ctcgacgtgc
     2101 tgccttacct caccggtggt tactttggcg ctggctgggt gggcaaaaaa aatgtacgat
     2161 tgagggtact gacggccttt gtgaaaaagc cggattggtc tacaccggat ggattcacca
     2221 atcaccacat taccgcctat gctgctgtgg tcgatttttt tctgaagccc cactggaaag
     2281 gattctggat cggtggcggc ccggtttatt ggcaaagtag catccaaacc gatcagcaaa
     2341 agcaaacggc ggaaagcaac aactggctgc tcaatggcag cgccggttac aacttcagcc
     2401 tgggtaagca tttttatctt tcgccctggg cgggattgag cctgcgggta gccggcgata
     2461 ccaaagtgcc ggtagacaat acaacgtaca ctctgccgca atggaaccct gaagcttcat
     2521 tgaaagtggg attcatattc tgatgcgcct caccaaaata ttcccgggtg actagtgtac
     2581 accgaaagtt tatttgttca tcttttgctc ccaaaccaat ttgcctttgg tatcaaaaac
     2641 tttgatgcca gggaatgagg ctttattctg aaagaactgc ccgtcctttt gcgaaaagcc
     2701 cagcaggatc atgccttcct cactttgtat ggccagcgta ttggacgccg tcagccatgg
     2761 tccctgccat gatatattgc catagctgat tgccaggctt ttcaaaaact gctgccggtg
     2821 ttggcagtgg tgttttgctg cacgatgcca gggtcaatac ggccatgcac aaggcaggca
     2881 ttgaaagtcg tgtgagtatc atgtgttggt tgtttcgaca aacgcatgat aaacgaaagc
     2941 agtcagcaat cgcataatcg tgtgaaatac attcaagcca actcgatata ctgaacatac
     3001 aggccaagca ggatatgcca taccaggtaa tgtcccaacc ggaccgccag ggaagcgagc
     3061 aacccatgct ttgcatagca ccaaaactgc cacgcattca tggcaatccc ggtaagcgta
     3121 gcatacaaca tgaaccacca agcaccgcca ggaaattgca tgatgggttc aatcagactg
     3181 gtgacaatgc cgaccaccca cagaaaaacg gtccggtact ttgatttgaa caagaactta
     3241 tcagccagca acagcaaggt aagtggcagt atgcggtaat acaattctac atccagcgca
     3301 ccagcggtgt acaaaaacag gctgtaagga aatggttgca gaaatggcgg caaagagtcg
     3361 tatggttcgg gatgcaacat taccttgatg actagtacat caagcacccc aaagatcata
     3421 cctatgccgg cggttttcca ccaccagccc tgcgtcttca ccaggtcatt ggcccggggc
     3481 agcgtagccc aggactgcat gaagatcatg ggtactattg gcagcaggta cagcaggttt
     3541 acccattgcc attgccggat gttatagcct gcatcggcaa gaacagcgcc gtataaaata
     3601 gtggccacta ccactaataa caggttagct gacagcatcc attctgcccg gtaattccta
     3661 atagaatttg ccacagtcat tgaatcttat tttttgataa cgcgtccact gccattg
//
LOCUS       DATIQF010000954         4888 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Phnomibacter sp. isolate SMAG_U15870 k141_288682,
            whole genome shotgun sequence.
ACCESSION   DATIQF010000954 DATIQF010000000
VERSION     DATIQF010000954.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936580
            Sequence Read Archive: SRR9691024
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phnomibacter sp. (soil metagenome)
  ORGANISM  Phnomibacter sp.
            Bacteria; Bacteroidota; Chitinophagia; Chitinophagales;
            Chitinophagaceae; Phnomibacter.
REFERENCE   1  (bases 1 to 4888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:16:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,294
            CDSs (total)                      :: 3,260
            Genes (coding)                    :: 3,239
            CDSs (with protein)               :: 3,239
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 7 of 21
            Pseudo Genes (internal stop)      :: 15 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4888
                     /organism="Phnomibacter sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288682"
                     /isolate="SMAG_U15870"
                     /isolation_source="soil"
                     /db_xref="taxon:2836217"
                     /environmental_sample
                     /country="China"
                     /lat_lon="30 N 106.96 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1232
                     /locus_tag="VLL95_16445"
     CDS             <1..1232
                     /locus_tag="VLL95_16445"
                     /inference="COORDINATES: protein motif:HMM:NF012961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 9 protein"
                     /protein_id="HSR40501.1"
                     /translation="AASAQRPVGTIISSPGGWYDAGDYNKYIVNSAISTYTLFRAVED
                     YPNYYQSLKLNIPESIGNAPDLLSEALYNFRWMLTMQDPEDGGVYHKLTNKTFDGEVM
                     PHQATNDRYVVMKTTAATLDFASVAAHLAAGAANGSFHLEELGSRSLHQAEKAWEWAK
                     ANPQVIYKQPVDIKTGEYGDDKLSDEWYWAACELFLATGKQEYAEAIVKYYQPTVTPE
                     WAIVHTLGTLSMLKSKKTIPKAVIKTGFKEDFFSYVQSLTDKAKRSAYGVSISHFEWG
                     SNSRVANEGLLKLVAYQLTGKEDFLHSALSDINYLLGCNATGYCFVTGFGVQQVKHIH
                     HRPSQADGIEAPIPGFLAGGPNLATFADCPGYKTRDRKYPAKSYLDQGCSYSTNEIAI
                     NWNAPMAYLTGALDAIH"
     gene            complement(1345..1635)
                     /locus_tag="VLL95_16450"
     CDS             complement(1345..1635)
                     /locus_tag="VLL95_16450"
                     /inference="COORDINATES: protein motif:HMM:NF012305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HSR40502.1"
                     /translation="MNIFVSNLSFAVQDDDLKGFFEPFGEVVSARVVTDRETRRSRGF
                     GFVEMANKAEAEKAIAELDGAVADGRAIRVNEARPREERSSNSKPSFSKSRW"
     gene            2191..2493
                     /locus_tag="VLL95_16455"
     CDS             2191..2493
                     /locus_tag="VLL95_16455"
                     /inference="COORDINATES: protein motif:HMM:NF017816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF922 domain-containing protein"
                     /protein_id="HSR40503.1"
                     /translation="MELDSVLSWSRPKERTESLLLHEQTHFDIAIISAKSYLKKLNET
                     IFTRSNVDSLLNHIHDQSMKEYRDLQKRYDEQTRNGKDKQKQQQWNSWVAMKLLEE"
     gene            2593..3426
                     /locus_tag="VLL95_16460"
     CDS             2593..3426
                     /locus_tag="VLL95_16460"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HSR40504.1"
                     /translation="MVSLQFSTPIAASPSKVWFVLWNEYSYRQWTKAFHPGSYAKSDW
                     QPGSRVHFLTPEGHGMYANIDVLEPQQKMDFHHLGEIRGFEEQPANESWKDAYETYEL
                     LPDGAGTLLKVSVDTEEAYKGAFENMFPSALANLKAMAEDFMITVEAVVAAPIEKAWD
                     CWTQPQHIVQWNQASEDWHTPHAENDLRIGGSFKSRMESRDGTMGFDFTGIYDDVQIH
                     QLIQYHMEDGRKVKVQFESLDKATKVTESFDPENMHSYELQYAGWQAILNSFKNHTEN
                     I"
     gene            3671..4126
                     /locus_tag="VLL95_16465"
     CDS             3671..4126
                     /locus_tag="VLL95_16465"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HSR40505.1"
                     /translation="MSNNQFRRGELYFVITGVANTALARRLQRYFRENAIDLTVEQWS
                     VLVHLWKEDGVSQQDLANKTYRDKPSMTRLVDNLERMGLVTRKASPDDRRINRIFLTE
                     EAKALRDKTMALANQTLLDGLEGVSAEDIEVTRKVLTQVYENLSLVNVG"
     gene            4208..>4888
                     /locus_tag="VLL95_16470"
     CDS             4208..>4888
                     /locus_tag="VLL95_16470"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSR40506.1"
                     /translation="MSTETKHTTALKGAEWLVKESNPMDVFIPEDFNEEQRMIMDMCQ
                     QYLDTEVIPVIDRIDKMEPGLMPSLMDKAGELGLLGVSIPEAYGGLGKPFIESMIVAE
                     GLGGGYSFSVAMAAHTGIGTLPILYFGTEEQKAKYIPNLASGVWKGAYGLTEPNSGSD
                     ALSAKTVAKLSDDGKHYILNGQKCWITNGGFADVYTVFAKIDGDKFTAFIVERVMEGF
                     TQGSEEHKM"
BASE COUNT         1416 a         1157 c         1219 g         1096 t
ORIGIN      
        1 ctgcagcaag tgcccaaaga cccgtgggca ccataatatc gtcacccgga ggttggtatg
       61 atgcagggga ctacaacaaa tacatcgtaa atagtgccat ttcaacatat accctttttc
      121 gtgcggttga agactatccc aactactacc aatcactcaa gctgaatatt cccgagtcaa
      181 ttggaaatgc tcctgactta ctgtcggaag cgctttacaa ctttcgttgg atgctgacca
      241 tgcaggaccc ggaggacggt ggcgtatacc acaaactgac gaacaaaact tttgatggtg
      301 aagtaatgcc acaccaggct accaatgacc gttatgttgt gatgaaaaca actgcagcta
      361 cattggattt tgcctccgta gccgctcacc tggcagcagg tgcagcaaat ggttcgttcc
      421 acctggaaga acttggttct aggagtttgc accaggccga aaaagcctgg gaatgggcaa
      481 aagcaaatcc ccaggtcatc tataagcaac cagtggatat aaaaacggga gaatatggag
      541 atgataaact ttcagatgaa tggtattggg cagcctgtga actatttctg gctactggca
      601 agcaggagta tgccgaggct attgtgaaat actaccagcc aactgttacg ccagaatggg
      661 ccattgttca tacactgggt acactatcga tgctcaaaag caaaaagaca attccaaaag
      721 ctgtaataaa gacagggttc aaggaggatt tcttctctta tgtacaatcg ctgacggaca
      781 aagcaaaaag gtcggcatac ggcgtgagta tcagccattt tgaatggggc agcaattcga
      841 gggtggctaa tgaagggctc ctgaagttag ttgcctacca actcacgggc aaagaggatt
      901 tcctgcattc agctttgtcc gacatcaatt acttgcttgg ttgcaatgct acaggatact
      961 gttttgttac gggatttggt gtccaacaag tgaaacacat acatcatcga ccctcccaag
     1021 ccgacggaat tgaagcgcct atacccgggt tcctggcagg cggtccgaac ctagcgacat
     1081 ttgccgattg cccgggttat aaaaccaggg atcggaaata cccagcgaaa tcttatttgg
     1141 atcagggttg cagttactca accaacgaaa tagccatcaa ttggaatgca ccgatggcct
     1201 acctcacagg tgcgctggat gcgatacatt gaaatgccaa cttgaaaggt ttttttcatc
     1261 caaacccttg tttcattatg aagcatatgt aaaaaaggaa cagccaccca aatgagtggc
     1321 tgtttctttt tgaaactagt tggcttacca gcggctcttg ctgaaagaag gcttactgtt
     1381 gctgctgcgc tcttcgcgag gacgggcttc gtttacacga atagcacggc catcggctac
     1441 ggcaccatcc aactcggcaa tggctttttc agcctcagcc ttgttggcca tttctacaaa
     1501 accgaaacca cggctacggc gggtttcacg gtcagttact acacgggcac ttactacttc
     1561 gccaaacggc tcgaaaaatc ctttcaggtc atcgtcctgc acggcgaagc tcaaattgga
     1621 aacaaaaatg ttcatctgga acaatttaaa aaatgaaaat aaacttgaga cgaagcagca
     1681 gacaaaaggg acaagactaa ctaacgacga aaagacgcga agcagggact atattccaat
     1741 gcacagatgc atttcactca aaataacggg gcgaaggtaa gggaacagat tggtgccaaa
     1801 tgttaatgtt ggatattgac acaaagtggc aatggaccga cagcacaagc ttttcgctta
     1861 cacatggact attcctgcct gttttcctgc agaacgccga taatgagctc atttctgcct
     1921 tacaagttca ccgtatttta gtatcccccc atgttcagaa tttgtttcat cattgcctgt
     1981 gtatactttt tattcgtttc agagacgaaa ggccaaacca tcattgttcg gggaaagcct
     2041 tacagggggg cacttgcctg ggacgatttc actggaaatc ccaataaaca atctcctttc
     2101 agttcccaaa cggcagtccg catttacccc catgtcagtt caccaaatct ttcaggagac
     2161 acagttagtt ttcgtcacat agaagtgatc gtggaacttg attctgtgct ttcctggtct
     2221 aggcccaaag aaagaacaga aagcctgctc cttcatgagc agacgcactt tgacatcgcc
     2281 atcattagtg ccaaatccta tctcaaaaaa ctgaatgaaa ccatcttcac gaggagtaac
     2341 gtggactcgc tgctcaatca tatccacgac cagtcgatga aggaataccg cgacctgcaa
     2401 aaacgctacg atgagcaaac caggaacggc aaagacaaac agaaacaaca acaatggaac
     2461 agttgggtag ccatgaaact attggaagag taggtccgct cattgtgtgg cagctttcaa
     2521 cagtcccaat tttatgagcg gcttgcaatc caaagcagag gtttgtatta tcgtcgttca
     2581 atttcatcaa tcatggtatc acttcaattc agcaccccta ttgccgcgtc gccttccaaa
     2641 gtctggtttg tgctgtggaa tgaatacagt tacaggcaat ggacaaaagc ttttcatccg
     2701 ggctcttatg caaaaagcga ctggcagccg ggcagccggg tccattttct gacgccggaa
     2761 gggcatggga tgtatgccaa tattgatgtg ctggagcccc agcaaaaaat ggattttcat
     2821 cacctgggag agatcagggg atttgaagaa caaccggcga atgaatcgtg gaaagacgct
     2881 tatgaaacat atgaactcct gccggacgga gcaggcactt tgctgaaggt gtcagtagat
     2941 actgaggaag catacaaggg tgcctttgaa aatatgttcc ccagcgcttt ggccaacctg
     3001 aaagcgatgg cagaagattt tatgattacc gtggaagctg tggtagcggc tccgatagag
     3061 aaagcttggg attgctggac gcagccgcaa catatagttc aatggaacca ggccagcgaa
     3121 gattggcaca cgccgcatgc cgaaaatgat ttgcgcattg gaggcagttt caaaagccgc
     3181 atggaatcga gggacggaac catgggtttt gactttaccg gcatctatga cgatgtgcaa
     3241 atacatcaat tgatacaata tcacatggaa gatggccgaa aggtgaaggt tcagtttgaa
     3301 tcgctggaca aggccacgaa agttaccgag tcgttcgatc cggaaaatat gcacagctat
     3361 gagctgcaat atgccggatg gcaagccata ctgaacagtt tcaagaacca tacggaaaac
     3421 atctaactgc tccaacacag cattgtctgg agcccaaagc ctgtagcgtt gaagcctgca
     3481 aacgggctga agggcggggg gatgcgcagg gcgccgacca atgggaggcg gtgcaccgcc
     3541 ctgtgcggtg tacggaaccc cgcagcagcc ccggcaactg ccgggaaatg ctcaattgct
     3601 gagcgcccca aatattctca ttgttttttc accaaggcta ttatctttga atagttgcat
     3661 aaacaactat atgtcaaaca accaattcag gagaggggag ctttacttcg tgatcaccgg
     3721 cgtggccaac accgctttgg cccgcaggct gcagcgctat ttccgcgaaa acgccattga
     3781 cctgaccgtg gagcaatgga gcgtactggt gcacctgtgg aaagaggacg gggtgagcca
     3841 acaggacctg gccaacaaaa cctaccgcga caaaccgagc atgacccgcc tggtggacaa
     3901 cctggaacgc atgggcctgg tgaccagaaa ggccagcccc gacgaccgcc gcatcaaccg
     3961 cattttcctg acagaagaag ctaaagccct ccgggacaaa accatggccc tggccaacca
     4021 aacgctcttg gatggactgg aaggcgtgag tgcagaagac attgaggtaa cgagaaaggt
     4081 attgacgcag gtgtacgaaa acctgagcct ggtaaatgtt ggatagtaaa aactgacctg
     4141 gtgcttaccc tccaacgcat ttgctgaaaa caaaaacaac gatcaaaaaa ataaaacatt
     4201 tcttgccatg agtaccgaaa cgaaacacac aacagcgctg aagggcgcag aatggctggt
     4261 gaaagaaagc aacccgatgg atgtgttcat tccggaagat ttcaacgaag agcagcgcat
     4321 gattatggac atgtgccagc agtatttgga tacagaagtc attccggtga ttgaccgcat
     4381 tgacaaaatg gaacccggcc tgatgcccag cctgatggac aaggcaggcg aactgggttt
     4441 gctgggagtg agcattcccg aagcctatgg tggcctgggc aagccattta ttgaaagcat
     4501 gattgtggcc gaaggcctgg gtggtggcta cagcttcagc gtggccatgg cggcgcacac
     4561 cggcattggc accctgccta ttttatattt tggcaccgaa gagcagaaag caaaatacat
     4621 tcccaatctg gccagcggcg tatggaaggg tgcctatgga ttaactgagc ccaacagtgg
     4681 cagtgatgcc cttagtgcca aaaccgtggc gaaactgagt gatgatggca agcactacat
     4741 cctcaacggg cagaagtgct ggatcaccaa cggcggattt gcagatgtgt ataccgtttt
     4801 cgccaaaata gatggcgaca aattcactgc ctttattgtg gagcgtgtaa tggaaggttt
     4861 tacccagggc agcgaagaac acaaaatg
//
